RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13773
(299 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 115 bits (290), Expect = 2e-31
Identities = 53/210 (25%), Positives = 71/210 (33%), Gaps = 55/210 (26%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
+ P +F K G + +GVL GPPG GKTLLAKAIA E + F ++ G + + M+ G
Sbjct: 30 YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVG 89
Query: 66 EANVR----------------DIFDKVTMENFRYAMGKSS-------------------- 89
+ VR D D V + G
Sbjct: 90 ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149
Query: 90 --------------PSALR-----ETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYI 130
AL + V V + V L D+D I
Sbjct: 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAII 209
Query: 131 AKVTNGFSGADLTEICQRACKLAIRQSIET 160
A+ T GFSGADL + A A R +
Sbjct: 210 ARGTPGFSGADLANLVNEAALFAARGNKRV 239
Score = 41.7 bits (98), Expect = 4e-05
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 99 EVPNITWEDIGGLEGVKRELQELVQ 123
+ T+ D+ G + K E+ ELV+
Sbjct: 5 DQIKTTFADVAGCDEAKEEVAELVE 29
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 99 bits (249), Expect = 2e-25
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 6 PVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 65
+++P +F + G + +GVL GPPG GKT LA+A+A E + FI+ G + + M+ G
Sbjct: 27 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 86
Query: 66 EANVRDIFDK 75
A VRD+F+
Sbjct: 87 AARVRDLFET 96
Score = 49.8 bits (119), Expect = 8e-08
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 90 PSALR-----ETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTE 144
AL + + + + + + + L +DVDL +AK T GF GADL
Sbjct: 161 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 220
Query: 145 ICQRACKLAIRQSIET 160
+ A LA R+
Sbjct: 221 LLNEAALLAAREGRRK 236
Score = 47.2 bits (112), Expect = 7e-07
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 99 EVPNITWEDIGGLEGVKRELQELVQ 123
E P +T++D+ G E K EL+E+V+
Sbjct: 2 EAPKVTFKDVAGAEEAKEELKEIVE 26
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 95.9 bits (237), Expect = 6e-24
Identities = 62/249 (24%), Positives = 99/249 (39%), Gaps = 65/249 (26%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
P+ HP F G++P RG+L YGPPG GKTL+A+A+ANE A F + GPE+++ GE
Sbjct: 22 LPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 81
Query: 65 SEANVRDIFDK--------VTMENFRYAMGKSS--------------------------- 89
SE+N+R F++ + ++ K
Sbjct: 82 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 141
Query: 90 --------PSALRETI---------VEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAK 132
P+++ + V++ + + + +L DVDL +A
Sbjct: 142 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 201
Query: 133 VTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEIT 192
T+G GADL +C A AIR+ ++ I E E + S +T
Sbjct: 202 ETHGHVGADLAALCSEAALQAIRKKMD-LIDLEDETIDAEVMNS------------LAVT 248
Query: 193 RAHFEEAMR 201
F A+
Sbjct: 249 MDDFRWALS 257
Score = 39.6 bits (91), Expect = 2e-04
Identities = 5/21 (23%), Positives = 14/21 (66%)
Query: 103 ITWEDIGGLEGVKRELQELVQ 123
+ ++D+GG +++E+V+
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVE 21
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 265
Score = 90.6 bits (224), Expect = 5e-22
Identities = 66/71 (92%), Positives = 70/71 (98%)
Query: 5 YPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
YPVEHP+KFLKFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGE
Sbjct: 25 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 84
Query: 65 SEANVRDIFDK 75
SEANVR+IFDK
Sbjct: 85 SEANVREIFDK 95
Score = 46.7 bits (110), Expect = 9e-07
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 100 VPNITWEDIGGLEGVKRELQELVQ 123
VP +TWEDIGGLE VKRELQELVQ
Sbjct: 1 VPQVTWEDIGGLEDVKRELQELVQ 24
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 89.3 bits (221), Expect = 3e-21
Identities = 29/204 (14%), Positives = 54/204 (26%), Gaps = 41/204 (20%)
Query: 6 PVEHPEKFLKFGMQPSRGV-LFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLTMWF 62
P G + + G+ + G GKT L A+ + + +V+ E L+ +
Sbjct: 107 VGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYN 166
Query: 63 GESEANVRDIFDKVT---------MENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEG 113
+ V DI + ++N A G ++ S + G
Sbjct: 167 TDFNVFVDDIARAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRG 226
Query: 114 V-------------------------KRELQELVQDVD--LNYIAKVTNGF--SGADLTE 144
+ DVD + + G L
Sbjct: 227 CVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRLTHTLQT 286
Query: 145 ICQRACKLAIRQSIETEIRREREK 168
L I S ++ ++ K
Sbjct: 287 SYGEHSVLTIHTSKQSGGKQASGK 310
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 80.1 bits (197), Expect = 8e-18
Identities = 31/227 (13%), Positives = 62/227 (27%), Gaps = 26/227 (11%)
Query: 2 ISTYPVEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM- 60
+ + + + + + R LF GP GKT LA A+ C ++V P
Sbjct: 136 MDSVVYDFLKCMVY-NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF 194
Query: 61 WFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEG-VKRELQ 119
G + +F+ V + PS I + N+ G ++ ++++
Sbjct: 195 ELGVAIDQFLVVFEDVKGTGGE---SRDLPSGQ--GINNLDNLRDYLDGSVKVNLEKKHL 249
Query: 120 ELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAM 179
+ I N +S + + E L
Sbjct: 250 NKRTQIFPPGIV-TMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEK------- 301
Query: 180 ETEDEDDPV-----PEITRAHF-----EEAMRFARRSVNDADIRKYE 216
+ A F + + R + + Y+
Sbjct: 302 RIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVYQ 348
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 73.5 bits (179), Expect = 9e-16
Identities = 27/246 (10%), Positives = 56/246 (22%), Gaps = 41/246 (16%)
Query: 15 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM---WFGESEANVRD 71
K ++ L G PG GKT L AI E Q N I + + + +D
Sbjct: 26 KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKD 85
Query: 72 IFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNY-- 129
+ + V T LQ + +
Sbjct: 86 VVKH-VTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMA 144
Query: 130 -------------------------------IAKVTNGFSGADLTEICQRACKLAIRQSI 158
+ +L + + IR
Sbjct: 145 VPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYN 204
Query: 159 ETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARRSVNDADIRKYEMF 218
++ + + +E E +++ + + + + ++ F
Sbjct: 205 REGVKLYSSLETPSISPKETLEKELNR----KVSGKEIQPTLERIEQKMVLNKHQETPEF 260
Query: 219 AQTLQQ 224
Q+
Sbjct: 261 KAIQQK 266
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 58.0 bits (139), Expect = 2e-10
Identities = 17/75 (22%), Positives = 28/75 (37%)
Query: 11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 70
++ P VL GPP GKT LA IA E FI + P+ + + ++
Sbjct: 30 QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAM 89
Query: 71 DIFDKVTMENFRYAM 85
++ +
Sbjct: 90 KKIFDDAYKSQLSCV 104
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 51.7 bits (122), Expect = 2e-08
Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Query: 1 MISTYPVEHPEKFLKFGMQPS---RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
++ + F G S R + YGPPG GKT A +A E + + ++
Sbjct: 29 WLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 88
Query: 58 LTMWFGESEANVRDIFDKVTMENFRYAMGKSSPSALRETIVEVPNI 103
A V++ D +++ + ++ + ++ + +
Sbjct: 89 --RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEV 132
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 51.4 bits (122), Expect = 4e-08
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 13/111 (11%)
Query: 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME 79
+ +L GP G GKT +A+ +A A FI V+ + + + V D + +
Sbjct: 48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY------VGKEVDSIIRD 101
Query: 80 NFRYAMGKSSPSALR--ETIVEVPNITWEDIGGL-----EGVKRELQELVQ 123
A G I E+ I + EGV+R+L LV+
Sbjct: 102 LTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVE 152
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 48.4 bits (114), Expect = 2e-07
Identities = 19/88 (21%), Positives = 34/88 (38%)
Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 71
+ K +P +L +GPPG GKT LA IA+E N GP + +
Sbjct: 26 EAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSL 85
Query: 72 IFDKVTMENFRYAMGKSSPSALRETIVE 99
+ + + + + + L + +
Sbjct: 86 EEGDILFIDEIHRLSRQAEEHLYPAMED 113
Score = 26.8 bits (58), Expect = 2.6
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 104 TWEDIGGLEGVKRELQELVQ 123
T ++ G E +K++L+ ++
Sbjct: 7 TLDEYIGQERLKQKLRVYLE 26
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 46.7 bits (109), Expect = 1e-06
Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 4/75 (5%)
Query: 11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQAN----FISVKGPELLTMWFGESE 66
+L+ G PG GKT+ + + + F+ + G E
Sbjct: 33 GNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 92
Query: 67 ANVRDIFDKVTMENF 81
Sbjct: 93 IARSLNIPFPRRGLS 107
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 47.1 bits (111), Expect = 1e-06
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 14 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE--SEANVRD 71
L+ + P +L GP G GKT +A+ +A A FI V+ + + + ++ +RD
Sbjct: 43 LRHEVTPK-NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD 101
Query: 72 IFDKVTMENFRYAMGK 87
+ D + + K
Sbjct: 102 LTDSAMKLVRQQEIAK 117
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 44.0 bits (102), Expect = 8e-06
Identities = 14/88 (15%), Positives = 21/88 (23%), Gaps = 3/88 (3%)
Query: 7 VEHPEKFLKFGMQPSR---GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 63
L G S G G GKT LAK
Sbjct: 29 ARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 88
Query: 64 ESEANVRDIFDKVTMENFRYAMGKSSPS 91
+ N+ I + + + +P+
Sbjct: 89 FNAPNLYTILSLIVRQTGYPIQVRGAPA 116
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 43.1 bits (100), Expect = 1e-05
Identities = 22/176 (12%), Positives = 48/176 (27%), Gaps = 15/176 (8%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTM 78
+ G G GK+ +A +A++ A F+ + + +
Sbjct: 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD-------GDFLHPRRNIEKMASGEPLN 56
Query: 79 ENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFS 138
++ R ++ A + + L+E ++ Y+
Sbjct: 57 DDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLK------- 109
Query: 139 GADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRA 194
D I R + + E L A + D D P+ + +
Sbjct: 110 -GDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVAS 164
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 42.7 bits (99), Expect = 1e-05
Identities = 22/127 (17%), Positives = 35/127 (27%), Gaps = 4/127 (3%)
Query: 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMEN 80
+R V GPPG GKT L + +++ + V G + G R FD VT+
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQG----GRRIGFDVVTLSG 56
Query: 81 FRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGA 140
R + + D+ E + + G
Sbjct: 57 TRGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGK 116
Query: 141 DLTEICQ 147
Sbjct: 117 MELFSQL 123
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 42.3 bits (98), Expect = 2e-05
Identities = 16/173 (9%), Positives = 45/173 (26%), Gaps = 19/173 (10%)
Query: 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMEN 80
+R ++ G GK+ + + + + +++ L+ + ++ I
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 81 FRYAMGKSSPSALRETIVEVPNITWEDI-GGLEGVKRELQELVQDVDLNYIAKVTNGFSG 139
++ A E +V + I + QE + +
Sbjct: 63 SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDL---------- 112
Query: 140 ADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEIT 192
+ +R RE + +A + ++
Sbjct: 113 --------DVLWVGVRCDGAVAEGRETARGDRVAGMAAKQAYVVHEGVEYDVE 157
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 42.4 bits (98), Expect = 2e-05
Identities = 16/190 (8%), Positives = 43/190 (22%), Gaps = 15/190 (7%)
Query: 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTME 79
++ V G GK++L +A G E + G E + + +
Sbjct: 6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDE---QAMQYSDYPQ 62
Query: 80 NFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSG 139
+ + + + D +
Sbjct: 63 MALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLK 122
Query: 140 ADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEA 199
+ + L ++ + + ++ L + P EI + +
Sbjct: 123 NNTEWVDDGLRSLGSQKQRQQFQQLLKKLL------------DKYKVPYIEIESPSYLDR 170
Query: 200 MRFARRSVND 209
+ +
Sbjct: 171 YNQVKAVIEK 180
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 41.5 bits (96), Expect = 5e-05
Identities = 19/34 (55%), Positives = 20/34 (58%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
VL GPPG GKT LA IA+E Q N GP L
Sbjct: 38 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 71
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 41.2 bits (95), Expect = 6e-05
Identities = 24/203 (11%), Positives = 62/203 (30%), Gaps = 12/203 (5%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
++ GP GKT L + + + + P + G V
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 84 AMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLT 143
+ + + + + + ++ + + N I + + ++L
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI-DILIACNKSELF 124
Query: 144 EICQRACKLAIRQSIETEIRREREKLAGNPAA---SAAMETEDED-----DPVPEITRAH 195
+ I+ ++E+EI++ E+ + E E+ A+
Sbjct: 125 TARPPS---KIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFAN 181
Query: 196 FEEAMRFARRSVNDADIRKYEMF 218
E ++ S+N I ++ +
Sbjct: 182 LEASVVAFEGSINKRKISQWREW 204
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 41.3 bits (95), Expect = 7e-05
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 3 STYPVEHPEKFL-------KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52
T P ++ + F K + L G GK+ + K NE +I +
Sbjct: 4 DTSPKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYL 60
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 41.1 bits (95), Expect = 8e-05
Identities = 33/212 (15%), Positives = 62/212 (29%), Gaps = 17/212 (8%)
Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 71
+ G +L G G GKTLL AN + ES A +
Sbjct: 17 EMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAI-----LFAYEESRAQLLR 71
Query: 72 IFDKVTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDV-DLNYI 130
M+ IV + L+ +K E+ + ++ +
Sbjct: 72 NAYSWGMDFEEMERQN------LLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSL 125
Query: 131 AKVTNGFSGADLTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPE 190
+ + G S + A ++ I ++ G + + + + D +
Sbjct: 126 SALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILL 185
Query: 191 ITRAHFEEAMRFA-----RRSVNDADIRKYEM 217
E R R S +D IR++ +
Sbjct: 186 QYVEIRGEMSRAINVFKMRGSWHDKAIREFMI 217
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 40.5 bits (93), Expect = 1e-04
Identities = 12/61 (19%), Positives = 19/61 (31%)
Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 71
K L+ G++ +G GKT + +A CQ G E
Sbjct: 14 KLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER 73
Query: 72 I 72
+
Sbjct: 74 L 74
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 39.5 bits (91), Expect = 2e-04
Identities = 11/58 (18%), Positives = 19/58 (32%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENF 81
+L G PG GK+ +A+A+AN + +L +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIM 64
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 39.3 bits (91), Expect = 2e-04
Identities = 4/43 (9%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 49
+E ++ ++ S +L G ++ + +
Sbjct: 3 LETLKRIIEKSEGIS--ILINGEDLSYPREVSLELPEYVEKFP 43
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 39.5 bits (91), Expect = 3e-04
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 23 GVLFYGPPGCGKTLLAKAIA 42
GVL +G G GK+ +A+A
Sbjct: 30 GVLVFGDRGTGKSTAVRALA 49
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 38.0 bits (87), Expect = 5e-04
Identities = 23/184 (12%), Positives = 52/184 (28%), Gaps = 12/184 (6%)
Query: 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMEN 80
++ V+ G PG G T ++ + + ++ K ++ F ++ + D+ M
Sbjct: 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK-EENLVSDRDQMRK 59
Query: 81 FRYAMGKSSPSALRETIVEVPNITW--EDIGGLEGVKRELQELVQDVDLNYIAKVTNGFS 138
K I E+ + D + + LN +
Sbjct: 60 MDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVV 119
Query: 139 GADLTEICQRACK--LAIRQSIETEIRREREKLAGNPAASAAMETE-------DEDDPVP 189
EI R +R + + + A S + T + + +
Sbjct: 120 ETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLD 179
Query: 190 EITR 193
+
Sbjct: 180 QAVE 183
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 37.8 bits (86), Expect = 7e-04
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 25 LFYGPPGCGKTLLAKAIANECQANF 49
L PG G L A++
Sbjct: 28 LIQALPGMGDDALIYALSRYLLCQQ 52
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 37.8 bits (86), Expect = 8e-04
Identities = 16/146 (10%), Positives = 36/146 (24%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKV 76
G++ +G GK+ L +A CQ G E +
Sbjct: 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIA 89
Query: 77 TMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNG 136
++ + R + + + R +V V Y +
Sbjct: 90 QRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGR 149
Query: 137 FSGADLTEICQRACKLAIRQSIETEI 162
+ + + R + + +
Sbjct: 150 GELSARQMHLAKFMRALQRLADQFGV 175
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 38.3 bits (88), Expect = 9e-04
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 4/112 (3%)
Query: 20 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGESEANVRDIFDKVTM 78
+L GP G GKTL+A+ +A L + GE N+ + +
Sbjct: 67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 126
Query: 79 ENFRYAMGKS--SPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLN 128
N + A + + + D+ G EGV++ L ++V+ +N
Sbjct: 127 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSG-EGVQQALLKIVEGSLVN 177
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 36.8 bits (84), Expect = 0.001
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFD 74
V+ G P GK + I + Q IS +LL N + +
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQLAHISAG--DLLRAEIAAGSENGKRAKE 54
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 37.1 bits (84), Expect = 0.002
Identities = 8/66 (12%), Positives = 19/66 (28%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
+L YGP G GK A+ + ++ + ++
Sbjct: 36 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP 95
Query: 84 AMGKSS 89
+ ++
Sbjct: 96 SDMGNN 101
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 37.0 bits (84), Expect = 0.002
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 60
G++ F G G GKT + Q E ++
Sbjct: 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSK 73
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 36.4 bits (83), Expect = 0.002
Identities = 19/144 (13%), Positives = 38/144 (26%), Gaps = 4/144 (2%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
VL GPPG GK A +A + IS EL E + ++
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQISTG--ELFRRNIEEGTKLGVEAKR--YLDAGDL 58
Query: 84 AMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLT 143
+ + + + + G + + L + ++
Sbjct: 59 VPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEE 118
Query: 144 EICQRACKLAIRQSIETEIRRERE 167
+ +R + I +
Sbjct: 119 VLLERLKGRGRADDTDDVILNRMK 142
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 36.2 bits (82), Expect = 0.002
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
V +K LK P +LFYGPPG GKT A+ E + L
Sbjct: 21 VTVLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI 78
Query: 67 ANVRDI---FDKVTMENFRYAMGKSSPSALRETIV--EVPNITWEDIGG 110
+ VR+ F ++T+ ++ P + I+ E ++T +
Sbjct: 79 SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSA 127
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 36.2 bits (82), Expect = 0.003
Identities = 13/92 (14%), Positives = 22/92 (23%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKV 76
G++ +G G GKT LA +A Q + E+ I +
Sbjct: 32 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA 91
Query: 77 TMENFRYAMGKSSPSALRETIVEVPNITWEDI 108
R + +
Sbjct: 92 QNRGLDPDEVLKHIYVARAFNSNHQMLLVQQA 123
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 36.2 bits (82), Expect = 0.003
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
K L G++ +G GKT L+ + Q G + F ++E
Sbjct: 28 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA--GGYPGGKIIFIDTE 80
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 35.7 bits (81), Expect = 0.003
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGP-ELLTMWFGESEANVRDIFDK 75
++ G P GK A+ I + IS E +DI D
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDA 55
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 35.7 bits (81), Expect = 0.003
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISV 52
+L G PG GKT L K +A++ +I+V
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 35.8 bits (81), Expect = 0.004
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 4/67 (5%)
Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 71
G+ R L G G GKTL + F + F E+ ++
Sbjct: 17 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV----FVTFEETPQDIIK 72
Query: 72 IFDKVTM 78
Sbjct: 73 NARSFGW 79
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 35.1 bits (79), Expect = 0.004
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANFISV 52
R + GP G GK+ + + +A + F
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 35.1 bits (79), Expect = 0.005
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFI 50
+ G GK +A+A+
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLNQQGG 35
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 35.4 bits (80), Expect = 0.005
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 28 GPPGCGKTLLAKAIANECQANFIS 51
GP G GK L KA+A Q + +
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLLD 33
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 34.9 bits (79), Expect = 0.005
Identities = 15/139 (10%), Positives = 42/139 (30%), Gaps = 6/139 (4%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
++ GPPG GK A + A ++ ++L + + K M+
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHLATG--DMLRSQIAKGTQLGLEA--KKIMDQGGL 60
Query: 84 AMGKSSPSALRETIVEVPNIT--WEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGAD 141
+ +++ + P + G + + + + + D
Sbjct: 61 VSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 120
Query: 142 LTEICQRACKLAIRQSIET 160
+ + A+++ +
Sbjct: 121 ELLVARITNADALKKRLAA 139
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 34.9 bits (79), Expect = 0.006
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 18 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52
++ S+ + G PG GK + I + +S
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 39
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 35.0 bits (79), Expect = 0.007
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 10 PEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIA 42
P ++ M P G GK++LA +A
Sbjct: 18 PLDYVLPNMVAGTVGALVSPGGAGKSMLALQLA 50
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 34.4 bits (78), Expect = 0.007
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISV 52
G PG GK ++ I + +S
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHLSS 37
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 34.5 bits (78), Expect = 0.008
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISV 52
++ G PG GK A+ I IS
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHIST 31
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 34.7 bits (78), Expect = 0.008
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANF 49
V G G GKT ++ A+ +
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHG 47
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 34.6 bits (78), Expect = 0.008
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 18 MQPSRG--VLFYGPPGCGKTLLAKAIANECQANFISV 52
M+ S+ V G PG GK I + +S
Sbjct: 1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 34.6 bits (78), Expect = 0.009
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 28 GPPGCGKTLLAKAIANECQANFIS 51
GP GK+ +AK IA + ++
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYLD 33
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 34.1 bits (77), Expect = 0.009
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISV 52
+ GPPG GK A +A ++
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 34.2 bits (77), Expect = 0.009
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 1/77 (1%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
+ G PG GK+ + + I+ K + D+ M
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGY-AKDRDEMRKLSV 62
Query: 84 AMGKSSPSALRETIVEV 100
K + I E
Sbjct: 63 EKQKKLQIDAAKGIAEE 79
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 34.1 bits (77), Expect = 0.010
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN--VRDIFDK 75
++ G PG GK A I + IS G +E + D+
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHIST-GDMFRAAIQEGTELGVKAKSFMDQ 55
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 34.2 bits (77), Expect = 0.011
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISV 52
+ G PG GK + + + +S
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHLSA 39
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 33.4 bits (75), Expect = 0.014
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 21 SRGVLFYGPPGCGKTLLAKAIANECQANFI 50
+ + G GCG T + + +A F+
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARALGYEFV 31
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 33.8 bits (76), Expect = 0.014
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKG 54
++ G P GKT ++K + + +
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTRE 35
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone
fold domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 31.6 bits (72), Expect = 0.018
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 14/59 (23%)
Query: 115 KRELQELVQDVDLNY---------IAKVTNGFSGADLTEICQRACKLA-IRQSIETEIR 163
K++LQ+LV++VD N + ++ + F + + AC+LA R+S E++
Sbjct: 6 KKKLQDLVREVDPNEQLDEDVEEMLLQIADDF----IESVVTAACQLARHRKSSTLEVK 60
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 33.4 bits (75), Expect = 0.020
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 2/100 (2%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
V G PG GK I + +S ELL ++ ++ +K E
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKYGYTHLSAG--ELLRDERKNPDSQYGELIEKYIKEGKIV 61
Query: 84 AMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
+ + RE + ++ ++G R L
Sbjct: 62 PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQG 101
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 33.5 bits (75), Expect = 0.021
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQAN 48
G + ++ G GK+ + A +
Sbjct: 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 33.6 bits (76), Expect = 0.023
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 44
+K + S + +G G GK+++A ++
Sbjct: 34 KKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSK 67
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 32.9 bits (75), Expect = 0.027
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANFISV 52
++F GP GK+ + + Q IS
Sbjct: 54 NCLVFCGPANTGKSYFGMSFIHFIQGAVISF 84
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 32.6 bits (73), Expect = 0.027
Identities = 12/83 (14%), Positives = 25/83 (30%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
+L G GKT + + I G + T+ + + NV D+ + +
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWR 74
Query: 84 AMGKSSPSALRETIVEVPNITWE 106
+ + + E
Sbjct: 75 HYYTGTQGLIFVVDCADRDRIDE 97
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 32.7 bits (73), Expect = 0.028
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFI 50
+L G PG GKT +A+ IA E
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGFQH 34
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 32.6 bits (73), Expect = 0.030
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANFI 50
+ ++F G G GK+ LA+A+A + F+
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFL 29
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 33.0 bits (75), Expect = 0.031
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFR 82
G G GK+ + +A+ ++ PE + W R +F+ +
Sbjct: 13 GVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYW--------RTLFETDVISGIY 59
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 32.7 bits (73), Expect = 0.032
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFIS 51
+ GP G GK+ K +A + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYI 32
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 32.3 bits (72), Expect = 0.034
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVK 53
+ G PG GK+ + + +A +
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTD 33
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 32.7 bits (73), Expect = 0.034
Identities = 11/64 (17%), Positives = 16/64 (25%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
++ G PG GKT L K I I E+ + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 84 AMGK 87
Sbjct: 63 FFTS 66
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 32.9 bits (74), Expect = 0.035
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 57
+P LF GP G GKT + ++ + E
Sbjct: 50 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 88
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 32.6 bits (74), Expect = 0.040
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 24 VLFYGPPGCGKTLLAKAIAN 43
VL G G GK ++A+ I
Sbjct: 26 VLITGESGVGKEVVARLIHK 45
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 32.0 bits (71), Expect = 0.045
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 24 VLFYGPPGCGKTLLAKAIANE 44
+L G PG GK+ A+ +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAK 25
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 31.8 bits (71), Expect = 0.051
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 71
V+ G PG GK+ + ++ +A +R
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQ 64
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 31.8 bits (71), Expect = 0.052
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 21 SRGVLFYGPPGCGKTLLAKAIANECQANF 49
SR ++ GP G GK+ L K + E +F
Sbjct: 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSF 29
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.9 bits (71), Expect = 0.057
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISV 52
+ F G GKT L K + A I
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRP 33
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 31.8 bits (71), Expect = 0.060
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
V+ + ++K G P +LF GPPG GKT A A+A E EL E
Sbjct: 33 VKRLKHYVKTGSMPH--LLFAGPPGVGKTTAALALARELFGENWRHNFLELN----ASDE 86
Query: 67 ANVRDIFDKVTMENFRYAMGKSSP 90
+ I +KV +G +S
Sbjct: 87 RGINVIREKVKEFARTKPIGGASF 110
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 31.1 bits (69), Expect = 0.100
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 7/110 (6%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
+L G G GKT + + G + T+ + + NV D+ + R
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGG---QTSIRP 76
Query: 84 AMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKV 133
+T + + D + +EL ++Q+ +L A +
Sbjct: 77 YW----RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL 122
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 31.0 bits (70), Expect = 0.11
Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 38/156 (24%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANEC--------------QANFISVKGPELLTMW---FGE 64
GVL G G GK+ A + I P +L+ G
Sbjct: 15 LGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGL 74
Query: 65 SEANVRDIF------------DKVTMENFRYAMGKSSPSALRETI----VEVPNITWEDI 108
+V ++F V +EN+ + +T V VP IT
Sbjct: 75 GIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVK 134
Query: 109 GGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTE 144
G R L +++ +N+ AK + +
Sbjct: 135 VG-----RNLAIIIEVAAMNFRAKSMGYDATKTFEK 165
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 30.7 bits (68), Expect = 0.13
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGP 55
G GK+ + I N + +
Sbjct: 9 GGTASGKSSVCAKIVQLLGQNEVDYRQK 36
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 30.8 bits (69), Expect = 0.15
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 2/60 (3%)
Query: 28 GPPGCGKTLLAKAIA--NECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAM 85
GP G GKT + IA + + + + R I +
Sbjct: 38 GPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL 97
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 31.1 bits (70), Expect = 0.15
Identities = 3/25 (12%), Positives = 7/25 (28%)
Query: 28 GPPGCGKTLLAKAIANECQANFISV 52
G G G + + + +
Sbjct: 11 GSSGAGTSTVKHTFDQIFRREGVKA 35
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 31.1 bits (70), Expect = 0.15
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 7/58 (12%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAM 85
G G GKT A+ + + GE + R++ + +
Sbjct: 12 GAYGIGKTTAAEEFLHHFAITPNRIL-------LIGEPLSYWRNLAGEDAICGIYGTQ 62
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 30.1 bits (66), Expect = 0.22
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 28 GPPGCGKTLLAKAIANECQANFIS 51
G GKT LA ++ + IS
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGIS 52
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.9 bits (66), Expect = 0.23
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANF 49
R V+ GP G GK+ L K + E + F
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIF 28
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 30.0 bits (66), Expect = 0.26
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 7 VEHPEKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
++ ++ K G P ++ G PG GKT +A+E + +
Sbjct: 24 IDRLQQIAKDGNMPH--MIISGMPGIGKTTSVHCLAHELLGRSYA-------DGVLELNA 74
Query: 67 ANVRDIFDKVTMENFRYAMGKSSPSALRETIV 98
++ R I V + +A K + IV
Sbjct: 75 SDDRGIDV-VRNQIKHFAQKKLHLPPGKHKIV 105
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase
CbhA {Clostridium thermocellum [TaxId: 1515]}
Length = 511
Score = 30.6 bits (68), Expect = 0.27
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 14/73 (19%)
Query: 227 GFGTNFRFPSNPNQSQSGGPNSAPANESGTGGILLMFPSNPNQSQSGGPNSAPANESGTG 286
G+G NP+ S FP+ P SGGPNS + +
Sbjct: 422 GYGERP--LQNPHDRFWTPQTSKR------------FPAPPPGIISGGPNSRFEDPTINA 467
Query: 287 GILQDEAEDDLYN 299
+ +D +
Sbjct: 468 AVKKDTPPQKCFI 480
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 30.1 bits (66), Expect = 0.27
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 56
KF+ G P +LFYGPPG GKT A+A E S E
Sbjct: 27 RKFVDEGKLPH--LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 70
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.0 bits (66), Expect = 0.28
Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 3/127 (2%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
V+F G G GKT L + N+ + E ++ D+ + VT+E
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSI-DVREFVTVEEIMR 61
Query: 84 AMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLT 143
+ + + + + + V + G L
Sbjct: 62 EGYGPNGAIVESYDRLMEKFNE--YLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLM 119
Query: 144 EICQRAC 150
E
Sbjct: 120 ENLPYPL 126
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 29.6 bits (65), Expect = 0.30
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 23 GVLFY--GPPGCGKTLLAKAIANECQANFISV 52
G + GP GK+ + + + SV
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSV 33
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 29.6 bits (65), Expect = 0.30
Identities = 8/69 (11%), Positives = 22/69 (31%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
V+ G GKT + + + G + + + + DI + ++ +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWN 77
Query: 84 AMGKSSPSA 92
++
Sbjct: 78 TYYTNTEFV 86
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 29.7 bits (65), Expect = 0.34
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 1/101 (0%)
Query: 25 LFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYA 84
L G G GK+ L AI + +K + + D+ + +R
Sbjct: 27 LIIGQNGSGKSSLLDAIL-VGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRIT 85
Query: 85 MGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDV 125
+ E + E E + + ++ +
Sbjct: 86 RRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL 126
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 29.4 bits (65), Expect = 0.35
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANF 49
+ G GK+ LA + ++ +
Sbjct: 27 IWLTGLSASGKSTLAVELEHQLVRDR 52
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 29.6 bits (66), Expect = 0.40
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAM 85
GP G GKT + + + I PE +T W R + T+ N
Sbjct: 11 GPHGMGKTTTTQLLVALGSRDDIVYV-PEPMTYW--------RVLGASETIANIYTTQ 59
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 28.9 bits (64), Expect = 0.43
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 11 EKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 64
E LK + + V G G GKT L + + +VK P +
Sbjct: 23 EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG-NVKSPTYTLVEEYN 75
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 28.7 bits (63), Expect = 0.44
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 24 VLFYGPPGCGKTL-LAKAIANECQANFISVKGPELLTMWF 62
+ P G GK+ + A A + + +
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFG 50
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 29.1 bits (65), Expect = 0.50
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 24 VLFYGPPGCGKTLLAKAIAN 43
+ +GP GKT +A+AIA+
Sbjct: 107 IWLFGPATTGKTNIAEAIAH 126
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 29.3 bits (65), Expect = 0.53
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 29/113 (25%)
Query: 21 SRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN------------ 68
LF G G GKT +A+ +A P + E E
Sbjct: 34 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS 93
Query: 69 ------VRDIFDKVTMENFR-----------YAMGKSSPSALRETIVEVPNIT 104
RD+ D V R + + + S +AL +T+ E P
Sbjct: 94 RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 146
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 28.9 bits (63), Expect = 0.54
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW-FGESEANVRDIFDKVTMENFR 82
+L G GKT + K E + P L E +I+D ++ R
Sbjct: 5 LLMLGLDNAGKTTILKKFNGE----DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 83 YAM 85
Sbjct: 61 SYW 63
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 28.8 bits (63), Expect = 0.56
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 63
+L G GKT L K +A+E ++ +G + ++
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ 58
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 28.7 bits (63), Expect = 0.62
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 21 SRGVLFYGPPGCGKTLLAKAIANECQANF 49
+ ++ G G G+ + + + F
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRF 31
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 268
Score = 28.7 bits (64), Expect = 0.74
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46
G+ R YGP GKT LA AI + Q
Sbjct: 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 28.4 bits (63), Expect = 0.82
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 22 RGVLFYGPPGCGKTLLAKA 40
GVL G G GK+ A
Sbjct: 16 VGVLLTGRSGIGKSECALD 34
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.0 bits (62), Expect = 0.88
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 22 RGVLFYGPPGCGKTLLA 38
GVL G G GK+ A
Sbjct: 16 VGVLITGDSGIGKSETA 32
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 28.5 bits (63), Expect = 0.92
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 28 GPPGCGKTLLAKAIA--NECQANFISVKGPELLTMW 61
GP G GKTL + IA + + I + G ++ +
Sbjct: 33 GPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS 68
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 28.0 bits (62), Expect = 1.2
Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 11/84 (13%)
Query: 28 GPPGCGKTLLAKAIANECQANFISV----------KGPELLTMWFGESEANVRDIFDKVT 77
G G GKT AIA +A + + M R +
Sbjct: 39 GANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV 98
Query: 78 MEN-FRYAMGKSSPSALRETIVEV 100
EN A + ++ + +
Sbjct: 99 YENLMMGAYNRKDKEGIKRDLEWI 122
>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 346
Score = 28.1 bits (62), Expect = 1.2
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 77 TMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNG 136
+ + + ++P A V +E +EG ELV D+D +
Sbjct: 55 DIRDLEDYIRATAPYA-----VYSSVALYEKPQEMEGWLG--TELVFDIDAKDLPLRRCE 107
Query: 137 FSGADLTEICQRACKLAIR 155
+ IC K +R
Sbjct: 108 HEPGTVCPICLNDAKEIVR 126
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.9 bits (61), Expect = 1.2
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 23 GVLFY--GPPGCGKTLLAKAIANECQANFISV 52
G L+ P G GK+ L +A+ V
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV 33
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 28.2 bits (62), Expect = 1.3
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGPELLTM 60
GP G GK+ + I N + K ++
Sbjct: 34 GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASI 66
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 28.0 bits (62), Expect = 1.4
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 28 GPPGCGKTLLAKAIA--NECQANFISVKGPELLTMWFGE 64
GP GCGKT + IA E I + + G
Sbjct: 36 GPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.9 bits (61), Expect = 1.4
Identities = 29/210 (13%), Positives = 56/210 (26%), Gaps = 28/210 (13%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDI-FDKVTMENFRYAMG 86
G PG GK+ + L + V + D + +G
Sbjct: 58 GVPGVGKSTTI-----------------DALGSLLTAAGHKVAVLAVDPSSTRTGGSILG 100
Query: 87 KSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ-----DVDLNYIAKVTNGFSGAD 141
+ A G L GV + +E + D+ + V G S
Sbjct: 101 DKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA 160
Query: 142 LTEICQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMR 201
+ ++ L + E++ ++ + A + D RA +
Sbjct: 161 VADLTDFFLVLML-PGAGDELQGIKKGIFELADMIAVNKA----DDGDGERRASAAASEY 215
Query: 202 FARRSVNDADIRKYEMFAQTLQQSRGFGTN 231
A + + T+ G G +
Sbjct: 216 RAALHILTPPSATWTPPVVTISGLHGKGLD 245
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 27.9 bits (61), Expect = 1.4
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 19 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISV 52
+ YG G GKT L +A NE + V
Sbjct: 34 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRV 67
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 28.0 bits (62), Expect = 1.4
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 17 GMQPSRGVLFYGPPGCGKTLLAKAIANECQ 46
G+ R V YGP GKT L + Q
Sbjct: 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 27.7 bits (61), Expect = 1.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 28 GPPGCGKTLLAKAIA 42
GP G GK++ + IA
Sbjct: 31 GPTGAGKSVFLELIA 45
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal
oligomerisation domain {Escherichia coli [TaxId: 562]}
Length = 95
Score = 26.3 bits (58), Expect = 1.6
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 93 LRETIVEVPNITWEDIGGLEGVKRELQELVQDVDLNYIAKVTNGFSGADLTEICQRACKL 152
LRE + E+ +D LE + ++++ + KL
Sbjct: 22 LREELDEIEQA--KDEARLESFIKRVKKMFDT----RHQLMVEQLDNETWDAAADTCRKL 75
Query: 153 AIRQSIETEIRREREKLAG 171
+ + + EKL
Sbjct: 76 RFLDKLRSSAEQLEEKLLD 94
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 27.6 bits (61), Expect = 1.6
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 24 VLFYGPPGCGKTLLAKAIA--NECQANFISVKG 54
V F+GP G GKT L K I+ + I G
Sbjct: 30 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 62
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 27.4 bits (61), Expect = 1.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 28 GPPGCGKTLLAKAIA 42
GP GCGKT + IA
Sbjct: 39 GPSGCGKTTTLRMIA 53
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 27.9 bits (61), Expect = 1.7
Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 16/188 (8%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRYAMGK 87
G PG GK+ +A + V + + DK M + A
Sbjct: 61 GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS---PVTGGSILGDKTRMNDLARAEA- 116
Query: 88 SSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ--DVDLNYIAKVTNGFSGADLTEI 145
P + +GG REL L + D+ + V G S ++ +
Sbjct: 117 ---------AFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARM 167
Query: 146 CQRACKLAIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEEAMRFARR 205
L I +++ ++ L + + ++ I R +E A+ RR
Sbjct: 168 VDCFISLQIAGG-GDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRR 226
Query: 206 SVNDADIR 213
++ R
Sbjct: 227 KYDEWQPR 234
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.6 bits (61), Expect = 1.7
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 28 GPPGCGKTLLAKAIA--NECQANFISVKGPELLTM-----WFGESEANVRDIFDKVTMEN 80
GP GCGK+ L + IA + + + + G + EN
Sbjct: 33 GPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAEN 92
Query: 81 FRYAMG--KSSPSALRETIVEV 100
+ + + + + + +V
Sbjct: 93 MSFGLKLAGAKKEVINQRVNQV 114
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 27.5 bits (61), Expect = 1.8
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 28 GPPGCGKTLLAKAIA--NECQANFISVKGPELLTMWFGESEANVRD 71
G G GK+ + I + I V G + + + + V D
Sbjct: 35 GSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 80
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor
Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 27.7 bits (61), Expect = 1.8
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANFISV 52
RG++ PP GKT+L + IA N
Sbjct: 45 RGLIV-APPKAGKTMLLQNIAQSIAYNHPDC 74
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 27.5 bits (61), Expect = 1.9
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 8/105 (7%)
Query: 24 VLFYGPPGCGKTLLAKAIA--NECQANFISVKGPELLTMWFGESEANV------RDIFDK 75
+ F GP G GK+ + + + A I++ G + + + + I
Sbjct: 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG 90
Query: 76 VTMENFRYAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQE 120
EN Y + ++++ + + E+ E
Sbjct: 91 TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE 135
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 27.8 bits (61), Expect = 2.2
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 55 PELLTMWFGESEANVRDIFDKVTMENFRYAMGKS 88
+ F + + + + ++ Y +G+S
Sbjct: 660 ANAIPKGFMDGKQACILMIKALELDPNLYRIGQS 693
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.2 bits (59), Expect = 2.4
Identities = 18/135 (13%), Positives = 46/135 (34%), Gaps = 9/135 (6%)
Query: 22 RGVLFYGPPGCGKTLLAKAIANECQANFISV----KGPELLTMWFGESEANVRDIFDKVT 77
R +L G G GK++L + +A + ++L+ FG + + + +D+ T
Sbjct: 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSK-FGRDKDIILNPYDQRT 109
Query: 78 ME--NFRYAMGKSSPSALRETIVEVPNITWEDIGGL--EGVKRELQELVQDVDLNYIAKV 133
F ++V + + RE + + + + ++
Sbjct: 110 KGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTPSMREL 169
Query: 134 TNGFSGADLTEICQR 148
+ + A ++
Sbjct: 170 FHWTTIATFDDLRGF 184
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 27.0 bits (59), Expect = 2.7
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFRY 83
G G GKT A +A + + +R + +KV +
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRP-LLVAADTQRPAAREQLRLLGEKVGVPVLEV 71
Query: 84 AMG 86
G
Sbjct: 72 MDG 74
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.2 bits (59), Expect = 2.8
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 18 MQPSRGVLFYGPPGCGKT------LLAKAIANECQA 47
+ R + PG GKT ++ +AI +
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRT 41
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 26.6 bits (57), Expect = 2.8
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 62
V+ G P GK+ L A+A A + G +
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLRE 42
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 22 RGVLFYGPPGCGKT-LLAKAIANECQANFISV 52
R VLF G GKT L + + + + S+
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI 32
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 26.3 bits (57), Expect = 3.0
Identities = 6/25 (24%), Positives = 7/25 (28%)
Query: 28 GPPGCGKTLLAKAIANECQANFISV 52
G GKT L + V
Sbjct: 8 GYKHSGKTTLMEKWVAAAVREGWRV 32
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 27.1 bits (58), Expect = 3.1
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 5/101 (4%)
Query: 25 LFYGPPGCGKTLLAKAI--ANECQANFISVKGPELLTMWFGESEANVRDIFDKVTMENFR 82
L G G GK+ L AI +K E G + + IF+K +
Sbjct: 27 LIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTK--VGARDTYIDLIFEKDGTKYRI 84
Query: 83 YAMGKSSPSALRETIVEVPNITWEDIGGLEGVKRELQELVQ 123
S+ ++ + E E + + ++
Sbjct: 85 TRRFLKGYSSGEIHAMKRL-VGNEWKHVTEPSSKAISAFME 124
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 26.2 bits (56), Expect = 3.7
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 63
+L G G GKT + + I G + T+ +
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYK 47
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator
Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Length = 116
Score = 25.5 bits (55), Expect = 5.1
Identities = 9/46 (19%), Positives = 10/46 (21%), Gaps = 6/46 (13%)
Query: 153 AIRQSIETEIRREREKLAGNPAASAAMETEDEDDPVPEITRAHFEE 198
I A A E + V RAHF
Sbjct: 13 YWEGCIADATHP------FCVCALLASEIPVLPETVVLEVRAHFRS 52
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 26.1 bits (56), Expect = 5.6
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 12 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIA 42
+FL+ + F G G GKT ++ A A
Sbjct: 2 QFLQ---NIPPYLFFTGKGGVGKTSISCATA 29
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 25.8 bits (56), Expect = 7.1
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 28 GPPGCGKTLLAKAIANECQANFISVKGPELLTM 60
G GK+ A+ + + EL+T
Sbjct: 87 GSVAVGKSTTARVLQALLSRWPEHRR-VELITT 118
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 25.6 bits (56), Expect = 7.6
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 28 GPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANVRDI 72
G G GK+ L + + + + V G EL T+ E R I
Sbjct: 38 GASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQI 84
>d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 324
Score = 25.6 bits (56), Expect = 7.7
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 142 LTEICQRACKLAIRQSIETEIRRE-REK 168
L E+ + K+ + +ET++ E R+
Sbjct: 277 LAEVVRWTWKVKLYTHLETDLFGELRDG 304
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.5 bits (55), Expect = 8.2
Identities = 8/43 (18%), Positives = 12/43 (27%)
Query: 24 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 66
++ G G GK A +A + V E
Sbjct: 15 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALE 57
>d1gpja3 d.58.39.1 (A:1-143) Glutamyl tRNA-reductase catalytic,
N-terminal domain {Archaeon Methanopyrus kandleri
[TaxId: 2320]}
Length = 143
Score = 24.9 bits (54), Expect = 8.8
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 119 QELVQDVDLNYIAKVTNGFSGADLTEICQRACKLAIRQSIETEI 162
QE+++ V Y G L + +RA L R ET I
Sbjct: 100 QEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRI 143
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 25.5 bits (56), Expect = 8.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 24 VLFYGPPGCGKTLLAKAIAN 43
+ +G G GKT+L + N
Sbjct: 71 IGLFGGAGVGKTVLIMELIN 90
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 25.8 bits (56), Expect = 9.1
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 55 PELLTMWFGESEANVRDIFDKVTMENFRYAMGKS 88
P + F + + I + M+ Y +G +
Sbjct: 677 PNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTT 710
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 25.1 bits (54), Expect = 9.3
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 24 VLFYGPPGCGKTLLAKAIAN 43
VL G G GKT +
Sbjct: 9 VLVVGVNGVGKTTTIAKLGR 28
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 25.4 bits (55), Expect = 9.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 24 VLFYGPPGCGKTLLAKAIA 42
+ G PG GKT + + +A
Sbjct: 46 PVLIGEPGVGKTAIVEGLA 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.382
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,095,491
Number of extensions: 49852
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 158
Length of query: 299
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,240,546
Effective search space: 265476844
Effective search space used: 265476844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.2 bits)