Query psy13774
Match_columns 110
No_of_seqs 158 out of 1038
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 20:10:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 8.1E-34 1.7E-38 205.6 10.4 106 2-107 232-337 (406)
2 KOG0734|consensus 100.0 5.1E-32 1.1E-36 204.2 8.4 104 2-108 384-487 (752)
3 KOG0733|consensus 100.0 8.8E-31 1.9E-35 199.6 10.5 101 3-106 593-693 (802)
4 KOG0730|consensus 100.0 1.2E-30 2.6E-35 199.8 9.1 103 2-107 515-617 (693)
5 KOG0736|consensus 100.0 8.5E-29 1.8E-33 192.2 11.3 105 2-107 752-859 (953)
6 KOG0733|consensus 100.0 4.1E-29 8.9E-34 190.6 8.6 102 2-106 270-375 (802)
7 COG0465 HflB ATP-dependent Zn 100.0 5.6E-28 1.2E-32 185.4 9.8 107 2-108 230-336 (596)
8 KOG0652|consensus 99.9 2.7E-27 5.9E-32 167.2 8.9 105 3-107 253-357 (424)
9 KOG0728|consensus 99.9 7.2E-27 1.6E-31 164.3 9.1 105 2-106 228-332 (404)
10 KOG0731|consensus 99.9 7.5E-27 1.6E-31 182.4 10.1 107 2-108 391-498 (774)
11 KOG0727|consensus 99.9 6.1E-27 1.3E-31 164.8 7.8 104 2-105 236-339 (408)
12 KOG0735|consensus 99.9 2.6E-26 5.6E-31 177.6 10.6 103 2-107 748-850 (952)
13 KOG0726|consensus 99.9 1.2E-26 2.6E-31 165.7 6.8 102 3-104 267-368 (440)
14 KOG0738|consensus 99.9 3.8E-26 8.2E-31 167.4 6.5 100 3-106 293-396 (491)
15 COG0464 SpoVK ATPases of the A 99.9 1.9E-25 4E-30 169.9 10.3 103 2-107 323-425 (494)
16 PLN00020 ribulose bisphosphate 99.9 1.2E-24 2.6E-29 159.6 10.1 101 2-107 195-313 (413)
17 PTZ00454 26S protease regulato 99.9 2.1E-24 4.5E-29 160.8 11.0 106 2-107 226-331 (398)
18 TIGR01243 CDC48 AAA family ATP 99.9 2.3E-24 5E-29 170.4 11.3 104 2-107 534-637 (733)
19 TIGR03689 pup_AAA proteasome A 99.9 1.7E-24 3.8E-29 164.8 10.0 105 2-108 273-381 (512)
20 CHL00195 ycf46 Ycf46; Provisio 99.9 2.3E-24 5E-29 163.8 10.4 102 2-107 306-407 (489)
21 COG1223 Predicted ATPase (AAA+ 99.9 9.4E-25 2E-29 153.9 7.3 102 2-107 198-299 (368)
22 CHL00206 ycf2 Ycf2; Provisiona 99.9 2E-24 4.2E-29 179.4 9.8 94 2-104 1720-1816(2281)
23 TIGR01241 FtsH_fam ATP-depende 99.9 3E-24 6.5E-29 163.6 10.1 106 2-107 135-240 (495)
24 PRK10733 hflB ATP-dependent me 99.9 4.8E-24 1.1E-28 166.6 10.0 106 2-107 232-337 (644)
25 KOG0739|consensus 99.9 1.3E-24 2.9E-29 155.6 5.7 99 3-106 214-313 (439)
26 KOG0729|consensus 99.9 4.9E-24 1.1E-28 151.2 5.4 105 2-106 258-362 (435)
27 CHL00176 ftsH cell division pr 99.9 3.2E-23 7E-28 161.6 9.9 106 2-107 263-368 (638)
28 KOG0651|consensus 99.9 4.4E-24 9.5E-29 153.0 4.6 104 2-105 213-316 (388)
29 PRK03992 proteasome-activating 99.9 5.8E-23 1.2E-27 152.7 10.7 106 2-107 212-317 (389)
30 KOG0732|consensus 99.9 5E-23 1.1E-27 164.8 8.4 102 2-106 351-452 (1080)
31 PTZ00361 26 proteosome regulat 99.9 8.7E-23 1.9E-27 153.4 8.1 105 2-106 264-368 (438)
32 KOG0730|consensus 99.9 3.3E-22 7.2E-27 153.7 9.1 101 2-107 265-366 (693)
33 TIGR01242 26Sp45 26S proteasom 99.8 7.5E-21 1.6E-25 140.2 10.7 105 2-106 203-307 (364)
34 KOG0740|consensus 99.8 3.4E-21 7.3E-26 143.5 7.0 102 1-107 232-335 (428)
35 KOG0737|consensus 99.8 3.8E-21 8.3E-26 140.1 6.2 100 3-107 175-276 (386)
36 KOG0741|consensus 99.8 7.6E-22 1.6E-26 149.4 1.4 104 2-106 304-415 (744)
37 TIGR01243 CDC48 AAA family ATP 99.8 8.9E-19 1.9E-23 138.8 10.3 102 2-106 259-360 (733)
38 PF00004 AAA: ATPase family as 99.7 1.2E-16 2.6E-21 101.3 7.9 86 2-91 45-132 (132)
39 KOG0743|consensus 99.6 2.5E-15 5.3E-20 112.3 7.2 93 14-106 286-384 (457)
40 KOG0742|consensus 99.6 4.9E-15 1.1E-19 110.3 6.9 102 2-109 430-532 (630)
41 KOG0744|consensus 99.3 8.5E-13 1.8E-17 95.9 3.7 101 3-105 234-340 (423)
42 COG0464 SpoVK ATPases of the A 99.3 1.5E-11 3.2E-16 94.0 10.0 101 2-106 64-164 (494)
43 KOG0735|consensus 99.3 3.1E-11 6.7E-16 94.8 8.9 106 3-109 483-590 (952)
44 KOG0736|consensus 99.2 4.8E-11 1E-15 94.3 8.0 100 1-108 477-579 (953)
45 PRK11034 clpA ATP-dependent Cl 99.2 7.2E-11 1.6E-15 94.3 6.7 92 2-105 266-362 (758)
46 TIGR02639 ClpA ATP-dependent C 99.1 1.8E-10 3.9E-15 91.9 7.3 92 2-105 262-358 (731)
47 TIGR00763 lon ATP-dependent pr 99.0 1.7E-09 3.7E-14 86.8 8.5 90 2-105 403-505 (775)
48 TIGR03345 VI_ClpV1 type VI sec 99.0 2.5E-09 5.3E-14 86.6 7.7 91 2-105 267-363 (852)
49 CHL00181 cbbX CbbX; Provisiona 99.0 5.6E-09 1.2E-13 75.3 8.8 85 13-106 121-210 (287)
50 TIGR02880 cbbX_cfxQ probable R 98.9 5.4E-09 1.2E-13 75.2 7.9 92 4-107 114-210 (284)
51 PRK10865 protein disaggregatio 98.9 3.2E-09 6.8E-14 86.1 6.9 92 2-106 258-355 (857)
52 TIGR02881 spore_V_K stage V sp 98.9 1.3E-08 2.7E-13 72.2 8.8 91 3-106 97-192 (261)
53 TIGR03346 chaperone_ClpB ATP-d 98.8 1.9E-08 4.1E-13 81.6 6.9 91 2-105 253-349 (852)
54 CHL00095 clpC Clp protease ATP 98.7 6.9E-08 1.5E-12 78.1 7.2 90 2-104 259-353 (821)
55 PRK07940 DNA polymerase III su 98.4 1.1E-06 2.4E-11 66.0 7.6 81 3-102 102-186 (394)
56 PRK00080 ruvB Holliday junctio 98.4 1.7E-06 3.6E-11 63.3 7.0 44 60-105 150-193 (328)
57 TIGR00635 ruvB Holliday juncti 98.4 2.2E-06 4.8E-11 61.7 7.5 77 13-105 80-172 (305)
58 TIGR02928 orc1/cdc6 family rep 98.3 7.2E-06 1.6E-10 60.2 8.7 89 5-106 119-213 (365)
59 PHA02544 44 clamp loader, smal 98.2 6.1E-06 1.3E-10 59.6 7.1 73 14-104 100-172 (316)
60 PRK10787 DNA-binding ATP-depen 98.2 8.3E-06 1.8E-10 66.0 7.9 86 5-105 408-506 (784)
61 TIGR00678 holB DNA polymerase 98.2 1.6E-05 3.5E-10 53.5 8.1 71 14-103 96-166 (188)
62 PRK06964 DNA polymerase III su 98.1 1.2E-05 2.7E-10 59.4 6.8 68 17-103 135-202 (342)
63 PRK06893 DNA replication initi 98.1 9.1E-06 2E-10 56.7 5.7 80 14-105 91-174 (229)
64 TIGR00362 DnaA chromosomal rep 98.0 9E-06 2E-10 61.0 5.2 79 14-106 199-282 (405)
65 PRK00411 cdc6 cell division co 98.0 4.3E-05 9.4E-10 56.7 8.7 81 13-106 137-221 (394)
66 PRK14956 DNA polymerase III su 98.0 4.6E-05 1E-09 58.6 8.2 72 14-104 121-192 (484)
67 COG0542 clpA ATP-binding subun 98.0 2.8E-05 6.1E-10 62.6 6.8 93 2-106 250-347 (786)
68 PRK12323 DNA polymerase III su 97.9 1.8E-05 3.9E-10 62.8 5.6 71 15-104 125-195 (700)
69 PRK05707 DNA polymerase III su 97.9 4.8E-05 1E-09 55.9 7.5 70 14-102 106-175 (328)
70 PRK00149 dnaA chromosomal repl 97.9 1.3E-05 2.8E-10 61.0 4.5 79 14-106 211-294 (450)
71 PRK14962 DNA polymerase III su 97.9 9.3E-05 2E-09 56.9 9.0 72 15-105 118-189 (472)
72 TIGR02397 dnaX_nterm DNA polym 97.9 5.2E-05 1.1E-09 55.5 7.2 85 3-106 102-190 (355)
73 PRK11331 5-methylcytosine-spec 97.9 7.8E-05 1.7E-09 57.0 7.9 70 6-91 262-357 (459)
74 PTZ00112 origin recognition co 97.9 5.8E-05 1.3E-09 61.9 7.3 89 3-106 856-950 (1164)
75 PRK14961 DNA polymerase III su 97.9 0.00012 2.5E-09 54.5 8.5 73 15-106 120-192 (363)
76 PRK07003 DNA polymerase III su 97.9 9.3E-05 2E-09 59.7 8.2 72 15-105 120-191 (830)
77 TIGR02902 spore_lonB ATP-depen 97.9 7.8E-05 1.7E-09 58.1 7.6 43 61-106 235-277 (531)
78 cd00009 AAA The AAA+ (ATPases 97.8 0.00012 2.5E-09 45.8 7.0 67 8-90 78-150 (151)
79 PRK13342 recombination factor 97.8 0.00015 3.3E-09 54.7 8.6 83 3-106 77-165 (413)
80 PRK14088 dnaA chromosomal repl 97.8 4.1E-05 8.9E-10 58.3 4.9 80 13-106 193-277 (440)
81 PRK05563 DNA polymerase III su 97.8 0.00021 4.5E-09 56.1 8.7 84 3-105 104-191 (559)
82 PRK09112 DNA polymerase III su 97.7 0.00018 4E-09 53.4 7.7 71 14-103 141-211 (351)
83 PRK06645 DNA polymerase III su 97.7 0.00028 6E-09 54.8 8.8 85 3-106 113-201 (507)
84 PRK08769 DNA polymerase III su 97.7 0.00024 5.1E-09 52.2 8.0 68 16-102 115-182 (319)
85 COG0466 Lon ATP-dependent Lon 97.7 0.00018 4E-09 57.4 7.8 93 2-105 406-508 (782)
86 PRK04132 replication factor C 97.7 0.00036 7.7E-09 57.0 9.6 70 16-104 632-701 (846)
87 PRK07764 DNA polymerase III su 97.7 0.0002 4.3E-09 58.4 8.0 74 13-105 119-192 (824)
88 PRK07994 DNA polymerase III su 97.7 0.0003 6.4E-09 56.0 8.8 72 15-105 120-191 (647)
89 PRK07993 DNA polymerase III su 97.7 0.00013 2.7E-09 53.9 6.4 70 14-102 108-177 (334)
90 PRK06871 DNA polymerase III su 97.7 0.0002 4.2E-09 52.7 7.2 69 15-102 108-176 (325)
91 PRK06090 DNA polymerase III su 97.7 0.00023 4.9E-09 52.3 7.3 69 15-102 109-177 (319)
92 PRK05342 clpX ATP-dependent pr 97.7 0.00041 9E-09 52.5 8.8 89 12-102 171-322 (412)
93 PRK07471 DNA polymerase III su 97.7 0.00023 4.9E-09 53.1 7.2 73 12-103 139-211 (365)
94 PRK08727 hypothetical protein; 97.6 0.00021 4.5E-09 50.0 6.4 77 14-104 93-174 (233)
95 PRK11034 clpA ATP-dependent Cl 97.6 0.00033 7.1E-09 56.7 8.2 80 10-105 553-666 (758)
96 COG0714 MoxR-like ATPases [Gen 97.6 0.0003 6.6E-09 51.5 7.4 70 16-101 114-199 (329)
97 smart00382 AAA ATPases associa 97.6 0.00032 6.9E-09 43.3 6.5 81 2-92 66-147 (148)
98 KOG2004|consensus 97.6 0.00031 6.8E-09 56.3 7.6 92 3-105 495-596 (906)
99 TIGR02639 ClpA ATP-dependent C 97.6 0.00047 1E-08 55.6 8.7 83 8-106 547-663 (731)
100 PF00308 Bac_DnaA: Bacterial d 97.6 0.00017 3.6E-09 50.1 5.3 79 14-106 97-180 (219)
101 PRK14970 DNA polymerase III su 97.6 0.00078 1.7E-08 49.9 9.1 70 15-103 109-178 (367)
102 TIGR00382 clpX endopeptidase C 97.6 0.00031 6.8E-09 53.2 7.0 90 12-103 179-329 (413)
103 PRK07133 DNA polymerase III su 97.6 0.00061 1.3E-08 54.9 8.7 82 3-103 103-188 (725)
104 PRK12422 chromosomal replicati 97.6 0.00014 3E-09 55.6 4.9 79 14-106 202-285 (445)
105 PRK05201 hslU ATP-dependent pr 97.6 0.00024 5.3E-09 54.0 6.1 84 14-101 249-344 (443)
106 PRK12402 replication factor C 97.6 0.0011 2.4E-08 48.1 9.4 72 15-105 126-197 (337)
107 PRK14086 dnaA chromosomal repl 97.5 0.00024 5.2E-09 56.2 6.2 78 14-106 377-460 (617)
108 PRK13407 bchI magnesium chelat 97.5 0.00039 8.4E-09 51.4 6.9 72 16-103 130-214 (334)
109 TIGR02640 gas_vesic_GvpN gas v 97.5 0.0004 8.6E-09 49.4 6.8 74 14-104 105-197 (262)
110 PRK08084 DNA replication initi 97.5 0.00029 6.4E-09 49.3 6.0 74 16-103 99-178 (235)
111 PRK14963 DNA polymerase III su 97.5 0.00075 1.6E-08 52.4 8.3 73 14-105 116-188 (504)
112 PRK14959 DNA polymerase III su 97.5 0.00051 1.1E-08 54.5 7.3 72 14-104 119-190 (624)
113 PLN03025 replication factor C 97.5 0.00043 9.4E-09 50.5 6.5 73 14-105 99-171 (319)
114 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00025 5.3E-09 48.7 4.7 78 14-105 90-172 (226)
115 PRK14969 DNA polymerase III su 97.4 0.0005 1.1E-08 53.6 6.7 70 16-104 121-190 (527)
116 PRK14965 DNA polymerase III su 97.4 0.00052 1.1E-08 54.0 6.6 70 16-104 121-190 (576)
117 PRK14953 DNA polymerase III su 97.4 0.0005 1.1E-08 53.1 6.4 73 15-106 120-192 (486)
118 PRK08058 DNA polymerase III su 97.4 0.00049 1.1E-08 50.6 6.0 68 15-101 111-178 (329)
119 PRK08691 DNA polymerase III su 97.4 0.00062 1.3E-08 54.6 6.8 72 15-105 120-191 (709)
120 PRK08903 DnaA regulatory inact 97.4 0.00051 1.1E-08 47.5 5.6 76 14-105 90-170 (227)
121 PRK14948 DNA polymerase III su 97.4 0.0015 3.2E-08 52.0 8.7 82 3-103 106-191 (620)
122 PF13177 DNA_pol3_delta2: DNA 97.4 0.00054 1.2E-08 45.4 5.4 60 14-92 102-161 (162)
123 PRK09111 DNA polymerase III su 97.4 0.0015 3.2E-08 51.7 8.6 84 3-105 117-204 (598)
124 PRK14949 DNA polymerase III su 97.4 0.0014 3E-08 53.9 8.5 72 15-105 120-191 (944)
125 PRK05642 DNA replication initi 97.4 0.00056 1.2E-08 47.9 5.6 73 16-102 99-176 (234)
126 TIGR02030 BchI-ChlI magnesium 97.4 0.00089 1.9E-08 49.5 6.8 73 15-103 132-217 (337)
127 PRK14951 DNA polymerase III su 97.3 0.0016 3.4E-08 51.8 8.5 71 16-105 126-196 (618)
128 PRK14964 DNA polymerase III su 97.3 0.00099 2.1E-08 51.6 7.3 72 15-105 117-188 (491)
129 PRK04195 replication factor C 97.3 0.0012 2.7E-08 50.7 7.7 75 14-105 98-173 (482)
130 TIGR00390 hslU ATP-dependent p 97.3 0.00071 1.5E-08 51.5 6.1 84 14-101 247-342 (441)
131 PRK06305 DNA polymerase III su 97.3 0.0015 3.3E-08 50.0 8.0 73 13-104 120-192 (451)
132 COG2256 MGS1 ATPase related to 97.3 0.00099 2.2E-08 50.3 6.6 79 3-102 89-173 (436)
133 PRK14958 DNA polymerase III su 97.3 0.0005 1.1E-08 53.4 5.2 70 16-104 121-190 (509)
134 PRK14952 DNA polymerase III su 97.3 0.002 4.4E-08 50.9 8.3 72 15-105 119-190 (584)
135 PRK05896 DNA polymerase III su 97.2 0.0013 2.9E-08 52.0 7.1 71 16-105 121-191 (605)
136 smart00350 MCM minichromosome 97.2 0.0018 3.8E-08 50.3 7.7 75 15-105 301-400 (509)
137 PRK14960 DNA polymerase III su 97.2 0.0015 3.3E-08 52.2 7.4 73 14-105 118-190 (702)
138 PRK08451 DNA polymerase III su 97.2 0.0017 3.8E-08 50.7 7.4 71 16-105 119-189 (535)
139 PRK14957 DNA polymerase III su 97.2 0.0027 5.8E-08 49.8 8.4 71 15-104 120-190 (546)
140 PRK07276 DNA polymerase III su 97.2 0.0019 4E-08 46.9 7.1 57 16-91 106-162 (290)
141 TIGR01650 PD_CobS cobaltochela 97.2 0.0021 4.6E-08 47.4 7.0 78 13-103 133-231 (327)
142 PRK05564 DNA polymerase III su 97.2 0.0018 3.9E-08 47.1 6.7 69 15-102 94-162 (313)
143 TIGR02903 spore_lon_C ATP-depe 97.1 0.0029 6.2E-08 50.3 8.1 44 60-106 323-367 (615)
144 PRK06620 hypothetical protein; 97.1 0.0014 3.1E-08 45.4 5.6 72 15-106 86-161 (214)
145 PF07728 AAA_5: AAA domain (dy 97.1 0.00063 1.4E-08 43.4 3.4 54 14-83 65-139 (139)
146 CHL00081 chlI Mg-protoporyphyr 97.1 0.0019 4.1E-08 48.1 6.3 73 15-103 145-230 (350)
147 PRK06647 DNA polymerase III su 97.1 0.0027 5.9E-08 49.9 7.5 72 14-104 119-190 (563)
148 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0045 9.8E-08 50.8 8.8 79 11-105 664-776 (852)
149 COG1220 HslU ATP-dependent pro 97.1 0.0024 5.2E-08 47.6 6.4 82 15-100 251-344 (444)
150 PRK07399 DNA polymerase III su 97.0 0.0022 4.7E-08 47.0 6.2 69 15-103 125-193 (314)
151 PRK09087 hypothetical protein; 97.0 0.00074 1.6E-08 47.2 3.5 74 16-106 89-167 (226)
152 PRK00440 rfc replication facto 97.0 0.0041 8.8E-08 44.7 7.4 72 15-105 103-174 (319)
153 PRK06581 DNA polymerase III su 97.0 0.005 1.1E-07 43.9 7.4 67 14-99 89-155 (263)
154 CHL00095 clpC Clp protease ATP 97.0 0.0067 1.5E-07 49.7 9.0 83 7-105 604-732 (821)
155 PRK14087 dnaA chromosomal repl 97.0 0.0016 3.5E-08 49.9 5.0 80 13-106 205-289 (450)
156 COG2812 DnaX DNA polymerase II 97.0 0.0027 5.9E-08 49.4 6.2 76 15-109 120-196 (515)
157 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0054 1.2E-07 50.4 8.3 81 8-105 662-780 (852)
158 COG0470 HolB ATPase involved i 96.9 0.0043 9.2E-08 44.6 6.7 68 15-101 110-177 (325)
159 TIGR02031 BchD-ChlD magnesium 96.9 0.0036 7.9E-08 49.5 6.7 74 16-105 86-174 (589)
160 PF01637 Arch_ATPase: Archaeal 96.9 0.02 4.3E-07 38.8 9.6 90 3-104 106-203 (234)
161 PF05496 RuvB_N: Holliday junc 96.8 0.0074 1.6E-07 42.5 7.1 73 14-102 101-189 (233)
162 PRK13341 recombination factor 96.8 0.0078 1.7E-07 48.8 7.6 72 14-106 109-182 (725)
163 PRK10865 protein disaggregatio 96.8 0.0074 1.6E-07 49.7 7.6 78 12-105 667-779 (857)
164 PRK08699 DNA polymerase III su 96.7 0.0041 9E-08 45.8 5.6 69 15-102 114-182 (325)
165 PRK07132 DNA polymerase III su 96.7 0.0097 2.1E-07 43.4 6.9 68 15-101 91-158 (299)
166 PRK14950 DNA polymerase III su 96.7 0.0072 1.6E-07 47.7 6.6 71 15-104 121-191 (585)
167 KOG0741|consensus 96.6 0.0049 1.1E-07 48.4 5.4 87 2-94 586-674 (744)
168 PHA02244 ATPase-like protein 96.6 0.014 3E-07 43.9 7.6 70 14-97 180-266 (383)
169 PF05707 Zot: Zonular occluden 96.4 0.0062 1.3E-07 41.3 4.5 68 14-92 79-146 (193)
170 PF05673 DUF815: Protein of un 96.4 0.063 1.4E-06 38.3 9.5 91 3-106 94-208 (249)
171 PRK14971 DNA polymerase III su 96.4 0.015 3.4E-07 46.2 7.1 69 16-103 123-191 (614)
172 COG1474 CDC6 Cdc6-related prot 96.3 0.028 6.1E-07 42.1 7.7 79 13-106 122-204 (366)
173 PF12846 AAA_10: AAA-like doma 96.3 0.013 2.7E-07 41.4 5.5 75 12-102 218-297 (304)
174 PRK05818 DNA polymerase III su 96.3 0.0097 2.1E-07 42.6 4.8 59 15-92 89-147 (261)
175 PRK05917 DNA polymerase III su 96.2 0.013 2.9E-07 42.5 5.5 58 16-92 97-154 (290)
176 COG0593 DnaA ATPase involved i 96.2 0.018 3.8E-07 43.8 6.2 77 14-104 175-256 (408)
177 TIGR02442 Cob-chelat-sub cobal 96.2 0.025 5.4E-07 45.2 7.2 72 16-103 128-212 (633)
178 PRK14954 DNA polymerase III su 96.2 0.021 4.5E-07 45.6 6.7 71 15-104 128-198 (620)
179 COG1219 ClpX ATP-dependent pro 96.1 0.012 2.5E-07 43.7 4.8 48 7-55 156-203 (408)
180 PRK09862 putative ATP-dependen 96.0 0.022 4.7E-07 44.4 6.1 64 16-95 296-391 (506)
181 PF07724 AAA_2: AAA domain (Cd 96.0 0.0085 1.8E-07 40.2 3.4 54 16-72 70-132 (171)
182 COG1239 ChlI Mg-chelatase subu 96.0 0.042 9E-07 41.8 7.3 77 9-102 140-229 (423)
183 PF05729 NACHT: NACHT domain 95.8 0.059 1.3E-06 34.6 6.7 89 9-107 76-165 (166)
184 PRK14955 DNA polymerase III su 95.8 0.014 3.1E-07 43.9 4.1 70 16-104 129-198 (397)
185 PRK08485 DNA polymerase III su 95.8 0.11 2.3E-06 36.1 8.0 70 17-104 57-138 (206)
186 COG0542 clpA ATP-binding subun 95.8 0.045 9.7E-07 44.7 6.9 80 10-105 588-705 (786)
187 KOG0989|consensus 95.5 0.054 1.2E-06 39.9 6.0 62 16-96 131-193 (346)
188 PF00493 MCM: MCM2/3/5 family 95.1 0.08 1.7E-06 39.0 5.9 76 15-106 122-222 (331)
189 COG2607 Predicted ATPase (AAA+ 95.0 0.43 9.4E-06 34.3 9.0 89 5-106 129-240 (287)
190 PF06068 TIP49: TIP49 C-termin 94.9 0.095 2.1E-06 39.6 5.9 69 15-103 279-359 (398)
191 PRK13531 regulatory ATPase Rav 94.9 0.11 2.5E-06 40.4 6.5 70 16-101 109-190 (498)
192 TIGR00368 Mg chelatase-related 94.9 0.091 2E-06 41.0 6.0 65 15-95 296-394 (499)
193 COG1224 TIP49 DNA helicase TIP 94.7 0.21 4.4E-06 37.8 7.1 70 14-103 291-372 (450)
194 KOG0745|consensus 94.5 0.091 2E-06 40.6 5.0 84 7-94 285-388 (564)
195 KOG2028|consensus 94.3 0.14 2.9E-06 39.1 5.4 73 3-96 206-285 (554)
196 TIGR03015 pepcterm_ATPase puta 94.2 0.63 1.4E-05 32.6 8.6 28 76-105 178-205 (269)
197 KOG1514|consensus 94.1 0.22 4.8E-06 40.4 6.5 81 12-105 506-589 (767)
198 KOG1942|consensus 94.1 0.33 7.1E-06 36.1 6.9 70 12-100 294-376 (456)
199 COG2255 RuvB Holliday junction 94.0 0.23 5E-06 36.4 6.0 42 59-102 150-191 (332)
200 PTZ00111 DNA replication licen 94.0 0.35 7.7E-06 40.3 7.7 43 59-103 599-655 (915)
201 PRK13406 bchD magnesium chelat 93.5 0.25 5.3E-06 39.3 5.8 65 16-96 95-173 (584)
202 cd01120 RecA-like_NTPases RecA 93.4 0.38 8.3E-06 30.4 5.9 64 6-73 77-140 (165)
203 PF12775 AAA_7: P-loop contain 93.3 0.23 4.9E-06 35.7 5.0 81 14-106 100-194 (272)
204 PF07693 KAP_NTPase: KAP famil 93.1 0.32 7E-06 35.0 5.6 77 12-104 170-262 (325)
205 KOG2228|consensus 92.9 0.19 4.2E-06 37.7 4.2 76 15-105 138-219 (408)
206 TIGR00764 lon_rel lon-related 92.9 0.35 7.6E-06 38.6 5.9 44 60-105 268-319 (608)
207 PF13304 AAA_21: AAA domain; P 92.5 0.28 6.1E-06 32.8 4.4 45 16-74 259-303 (303)
208 CHL00195 ycf46 Ycf46; Provisio 92.5 1.3 2.8E-05 34.6 8.4 74 15-105 82-155 (489)
209 TIGR02237 recomb_radB DNA repa 92.0 0.27 5.8E-06 33.3 3.9 66 5-73 88-153 (209)
210 PHA00012 I assembly protein 91.5 0.28 6E-06 36.6 3.6 57 14-79 81-137 (361)
211 PF13173 AAA_14: AAA domain 91.2 1 2.2E-05 28.2 5.7 64 14-96 61-126 (128)
212 PF07726 AAA_3: ATPase family 91.2 0.42 9.1E-06 30.9 3.8 52 16-83 64-129 (131)
213 PF13401 AAA_22: AAA domain; P 91.2 0.76 1.7E-05 28.4 5.1 48 5-67 78-125 (131)
214 KOG1051|consensus 90.9 0.5 1.1E-05 39.4 4.9 88 2-102 267-360 (898)
215 COG1136 SalX ABC-type antimicr 90.8 0.54 1.2E-05 33.1 4.4 66 4-89 150-215 (226)
216 KOG0732|consensus 89.8 0.43 9.3E-06 40.4 3.6 88 3-108 642-729 (1080)
217 COG1134 TagH ABC-type polysacc 89.6 0.65 1.4E-05 33.1 4.0 26 1-26 152-177 (249)
218 PRK10365 transcriptional regul 89.4 0.74 1.6E-05 34.6 4.5 68 14-98 233-316 (441)
219 PF14532 Sigma54_activ_2: Sigm 88.8 1.5 3.3E-05 27.8 5.1 14 13-26 68-81 (138)
220 smart00763 AAA_PrkA PrkA AAA d 88.6 2.3 5.1E-05 32.0 6.5 74 16-106 238-328 (361)
221 TIGR00602 rad24 checkpoint pro 88.2 8.1 0.00017 31.3 9.7 14 14-27 195-208 (637)
222 KOG2680|consensus 87.5 3.5 7.5E-05 30.9 6.7 13 14-26 288-300 (454)
223 COG1121 ZnuC ABC-type Mn/Zn tr 87.4 1.9 4.2E-05 30.9 5.3 56 5-74 148-203 (254)
224 PF01078 Mg_chelatase: Magnesi 87.3 0.82 1.8E-05 31.8 3.2 69 10-95 103-205 (206)
225 cd01121 Sms Sms (bacterial rad 87.2 4.3 9.4E-05 30.6 7.3 28 3-30 147-174 (372)
226 PF05872 DUF853: Bacterial pro 87.1 0.8 1.7E-05 35.6 3.4 72 3-87 239-315 (502)
227 PRK13539 cytochrome c biogenes 87.0 2 4.4E-05 29.1 5.1 69 4-94 135-203 (207)
228 KOG0478|consensus 86.2 3.2 7E-05 34.0 6.4 69 15-96 527-617 (804)
229 cd01122 GP4d_helicase GP4d_hel 86.1 1.5 3.2E-05 30.9 4.2 55 8-67 134-188 (271)
230 PRK11361 acetoacetate metaboli 86.1 1.5 3.3E-05 33.1 4.5 67 15-98 238-320 (457)
231 COG1131 CcmA ABC-type multidru 85.9 1.3 2.7E-05 32.2 3.8 61 2-75 142-202 (293)
232 PF05621 TniB: Bacterial TniB 85.6 2.3 5.1E-05 31.2 5.0 82 5-98 136-221 (302)
233 COG1116 TauB ABC-type nitrate/ 85.0 1.7 3.6E-05 31.1 3.9 22 1-22 135-156 (248)
234 KOG1051|consensus 84.8 3 6.6E-05 35.0 5.8 51 6-70 652-711 (898)
235 cd03227 ABC_Class2 ABC-type Cl 84.7 2.3 4.9E-05 27.8 4.3 48 13-74 98-145 (162)
236 KOG0990|consensus 83.9 4.5 9.8E-05 30.3 5.8 61 14-93 131-191 (360)
237 TIGR02974 phageshock_pspF psp 83.9 2.8 6.1E-05 30.9 4.9 68 14-98 93-176 (329)
238 PRK09361 radB DNA repair and r 83.8 0.86 1.9E-05 31.3 2.1 85 13-98 106-197 (225)
239 cd01124 KaiC KaiC is a circadi 83.7 7.8 0.00017 25.3 6.6 25 4-28 85-109 (187)
240 PF04465 DUF499: Protein of un 83.5 3.1 6.6E-05 35.5 5.4 18 12-29 97-114 (1035)
241 COG1241 MCM2 Predicted ATPase 83.3 1.5 3.1E-05 35.7 3.4 43 59-103 425-481 (682)
242 TIGR01818 ntrC nitrogen regula 83.0 3.1 6.8E-05 31.6 5.0 14 14-27 228-241 (463)
243 PF14516 AAA_35: AAA-like doma 82.4 9.9 0.00021 28.0 7.3 17 12-28 125-141 (331)
244 COG4598 HisP ABC-type histidin 81.8 4.6 0.0001 28.1 4.9 52 4-68 160-211 (256)
245 PRK11388 DNA-binding transcrip 81.7 4.6 0.0001 32.3 5.7 68 14-98 416-499 (638)
246 PF13872 AAA_34: P-loop contai 81.6 13 0.00028 27.5 7.4 72 2-79 160-231 (303)
247 cd03240 ABC_Rad50 The catalyti 81.4 4.4 9.5E-05 27.6 4.8 66 6-90 131-196 (204)
248 cd01394 radB RadB. The archaea 81.4 4.1 8.8E-05 27.7 4.7 79 14-93 103-188 (218)
249 PF03969 AFG1_ATPase: AFG1-lik 81.3 2.3 4.9E-05 32.0 3.6 41 15-70 128-168 (362)
250 TIGR02858 spore_III_AA stage I 81.1 4.6 9.9E-05 29.1 5.0 64 5-90 185-256 (270)
251 TIGR02915 PEP_resp_reg putativ 80.9 3.7 8.1E-05 31.0 4.7 68 14-98 233-316 (445)
252 cd03283 ABC_MutS-like MutS-lik 80.8 4.5 9.7E-05 27.6 4.7 59 3-74 94-152 (199)
253 PRK11823 DNA repair protein Ra 80.5 7.7 0.00017 29.9 6.3 28 3-30 145-172 (446)
254 COG1066 Sms Predicted ATP-depe 80.1 8.1 0.00018 29.9 6.1 31 2-32 156-186 (456)
255 PRK10263 DNA translocase FtsK; 80.1 2.9 6.4E-05 36.4 4.2 72 16-100 1142-1215(1355)
256 cd03287 ABC_MSH3_euk MutS3 hom 79.9 4.6 9.9E-05 28.2 4.5 58 3-74 101-158 (222)
257 PF05272 VirE: Virulence-assoc 79.3 2.3 4.9E-05 29.2 2.8 29 60-91 140-169 (198)
258 PF12774 AAA_6: Hydrolytic ATP 79.1 19 0.00042 25.2 7.8 83 3-100 74-175 (231)
259 PF13481 AAA_25: AAA domain; P 79.1 2.3 5E-05 28.2 2.8 27 3-29 129-156 (193)
260 cd03286 ABC_MSH6_euk MutS6 hom 78.9 5.2 0.00011 27.8 4.6 59 3-75 100-158 (218)
261 TIGR01166 cbiO cobalt transpor 78.9 6.4 0.00014 26.2 4.9 21 4-24 135-155 (190)
262 COG4555 NatA ABC-type Na+ tran 78.8 11 0.00023 26.7 6.0 56 5-74 142-197 (245)
263 PRK11608 pspF phage shock prot 78.8 6.5 0.00014 28.9 5.3 68 14-98 100-183 (326)
264 cd03298 ABC_ThiQ_thiamine_tran 78.8 3.1 6.7E-05 28.1 3.4 58 4-74 136-193 (211)
265 KOG2035|consensus 78.5 12 0.00027 27.7 6.4 71 16-105 129-199 (351)
266 PRK09694 helicase Cas3; Provis 78.1 4.3 9.2E-05 34.1 4.5 45 10-67 435-479 (878)
267 TIGR02746 TraC-F-type type-IV 78.1 7.9 0.00017 31.7 6.0 69 12-93 635-708 (797)
268 COG1373 Predicted ATPase (AAA+ 77.3 26 0.00057 26.6 8.3 67 14-98 94-160 (398)
269 cd03276 ABC_SMC6_euk Eukaryoti 76.4 12 0.00025 25.5 5.7 51 12-74 129-180 (198)
270 PRK05022 anaerobic nitric oxid 76.1 6.7 0.00015 30.6 4.9 68 14-98 281-364 (509)
271 TIGR00929 VirB4_CagE type IV s 76.0 4.7 0.0001 32.8 4.2 68 12-94 627-699 (785)
272 cd01393 recA_like RecA is a b 75.6 3.1 6.7E-05 28.3 2.7 60 12-72 112-171 (226)
273 KOG2227|consensus 75.5 6.7 0.00014 30.8 4.6 78 14-104 256-337 (529)
274 PRK15115 response regulator Gl 74.9 6.4 0.00014 29.7 4.5 67 15-98 229-311 (444)
275 cd00984 DnaB_C DnaB helicase C 74.9 8.5 0.00018 26.4 4.8 53 10-68 119-171 (242)
276 TIGR02211 LolD_lipo_ex lipopro 74.9 8.2 0.00018 26.2 4.7 57 4-73 149-205 (221)
277 TIGR03864 PQQ_ABC_ATP ABC tran 74.8 5.8 0.00012 27.4 3.9 58 4-74 140-197 (236)
278 PF02463 SMC_N: RecF/RecN/SMC 74.7 8.6 0.00019 26.1 4.7 22 6-27 150-171 (220)
279 TIGR03269 met_CoM_red_A2 methy 74.6 5.2 0.00011 31.1 4.0 58 4-74 176-233 (520)
280 PRK13540 cytochrome c biogenes 74.5 8.8 0.00019 25.8 4.7 58 4-75 135-192 (200)
281 PRK13538 cytochrome c biogenes 74.3 7.7 0.00017 26.1 4.4 58 4-75 137-194 (204)
282 COG4565 CitB Response regulato 74.1 4.9 0.00011 28.2 3.3 70 2-88 34-103 (224)
283 PRK15429 formate hydrogenlyase 73.7 15 0.00033 29.8 6.5 68 14-98 470-553 (686)
284 COG0497 RecN ATPase involved i 73.4 10 0.00022 30.3 5.3 20 86-105 516-536 (557)
285 COG1674 FtsK DNA segregation A 73.4 3.5 7.5E-05 34.4 2.9 74 13-99 638-712 (858)
286 cd03231 ABC_CcmA_heme_exporter 73.1 9.7 0.00021 25.6 4.6 58 4-75 133-190 (201)
287 KOG0482|consensus 73.1 0.56 1.2E-05 37.2 -1.6 43 59-103 481-537 (721)
288 COG3950 Predicted ATP-binding 72.9 2.8 6E-05 31.8 2.0 20 10-29 291-310 (440)
289 PRK13634 cbiO cobalt transport 72.9 5 0.00011 28.8 3.3 57 4-73 153-209 (290)
290 COG2401 ABC-type ATPase fused 72.9 2.4 5.3E-05 33.0 1.7 52 10-74 521-572 (593)
291 PRK13853 type IV secretion sys 72.7 5.7 0.00012 32.8 3.9 69 12-95 625-698 (789)
292 PRK11629 lolD lipoprotein tran 72.6 7.1 0.00015 26.9 3.9 56 5-73 154-209 (233)
293 PRK08116 hypothetical protein; 72.6 4.1 8.8E-05 29.2 2.8 69 14-97 178-254 (268)
294 KOG2383|consensus 72.5 5.3 0.00011 30.8 3.4 13 58-70 222-234 (467)
295 PF00931 NB-ARC: NB-ARC domain 72.2 19 0.00042 25.2 6.2 74 10-105 97-170 (287)
296 TIGR02012 tigrfam_recA protein 72.0 12 0.00025 27.8 5.1 65 8-72 127-194 (321)
297 cd03267 ABC_NatA_like Similar 71.7 9.2 0.0002 26.5 4.3 57 4-73 161-217 (236)
298 cd03255 ABC_MJ0796_Lo1CDE_FtsE 71.6 5.5 0.00012 27.0 3.2 57 4-73 148-204 (218)
299 cd03257 ABC_NikE_OppD_transpor 71.5 5.7 0.00012 27.1 3.2 56 5-73 154-209 (228)
300 TIGR02315 ABC_phnC phosphonate 71.4 7.7 0.00017 26.8 3.9 57 4-73 153-209 (243)
301 PRK10820 DNA-binding transcrip 71.2 17 0.00037 28.6 6.1 67 15-98 299-381 (520)
302 cd03239 ABC_SMC_head The struc 71.2 11 0.00024 25.1 4.5 15 13-27 115-129 (178)
303 PF00488 MutS_V: MutS domain V 71.2 12 0.00026 26.3 4.8 59 2-74 112-170 (235)
304 TIGR03005 ectoine_ehuA ectoine 70.4 8.1 0.00018 26.9 3.9 56 5-73 155-210 (252)
305 PLN03210 Resistant to P. syrin 70.4 35 0.00076 29.5 8.2 70 12-104 294-363 (1153)
306 COG1106 Predicted ATPases [Gen 70.3 2.4 5.2E-05 32.1 1.2 51 16-79 272-322 (371)
307 TIGR01184 ntrCD nitrate transp 69.7 6.8 0.00015 27.0 3.3 56 4-72 122-177 (230)
308 COG1119 ModF ABC-type molybden 69.4 39 0.00084 24.4 7.0 62 4-78 179-241 (257)
309 PRK10938 putative molybdenum t 69.3 11 0.00024 29.0 4.7 58 4-74 409-466 (490)
310 cd03281 ABC_MSH5_euk MutS5 hom 69.1 24 0.00052 24.2 5.9 58 10-77 104-161 (213)
311 PRK09183 transposase/IS protei 68.7 16 0.00036 25.9 5.2 14 13-26 163-176 (259)
312 TIGR01277 thiQ thiamine ABC tr 68.7 8.2 0.00018 26.2 3.5 22 5-26 137-158 (213)
313 cd03226 ABC_cobalt_CbiO_domain 68.6 8.2 0.00018 26.0 3.5 56 4-73 134-189 (205)
314 PF00270 DEAD: DEAD/DEAH box h 68.5 7.5 0.00016 24.8 3.2 15 15-29 120-134 (169)
315 PRK13652 cbiO cobalt transport 68.4 9.6 0.00021 27.1 4.0 57 4-73 145-201 (277)
316 PRK13898 type IV secretion sys 68.4 10 0.00022 31.4 4.5 69 12-95 640-713 (800)
317 PRK11300 livG leucine/isoleuci 68.4 9.5 0.00021 26.5 3.9 57 4-73 161-217 (255)
318 cd03233 ABC_PDR_domain1 The pl 68.4 18 0.00038 24.4 5.1 20 5-24 127-146 (202)
319 PRK13541 cytochrome c biogenes 68.3 31 0.00067 23.0 6.2 57 5-75 132-188 (195)
320 cd00983 recA RecA is a bacter 68.1 19 0.0004 26.8 5.4 65 9-73 128-195 (325)
321 PRK13537 nodulation ABC transp 68.1 8.4 0.00018 28.0 3.6 56 4-73 146-201 (306)
322 PRK10253 iron-enterobactin tra 68.0 12 0.00025 26.4 4.3 57 4-73 151-207 (265)
323 KOG1968|consensus 67.8 9.6 0.00021 32.1 4.2 66 17-99 431-496 (871)
324 COG1485 Predicted ATPase [Gene 67.6 9.1 0.0002 28.9 3.7 45 16-75 132-177 (367)
325 cd03259 ABC_Carb_Solutes_like 67.5 8.4 0.00018 26.0 3.4 56 5-73 139-194 (213)
326 PF13175 AAA_15: AAA ATPase do 67.5 16 0.00036 26.9 5.2 43 17-72 372-414 (415)
327 cd03213 ABCG_EPDR ABCG transpo 67.5 18 0.00038 24.3 4.9 22 4-25 119-140 (194)
328 cd03261 ABC_Org_Solvent_Resist 67.3 7.9 0.00017 26.6 3.3 56 4-72 144-199 (235)
329 TIGR02770 nickel_nikD nickel i 67.3 7.3 0.00016 26.8 3.1 56 5-73 134-189 (230)
330 PRK10575 iron-hydroxamate tran 66.9 7.5 0.00016 27.4 3.1 57 4-73 155-211 (265)
331 PRK13645 cbiO cobalt transport 66.9 5.9 0.00013 28.4 2.6 57 4-73 158-214 (289)
332 cd03216 ABC_Carb_Monos_I This 66.9 22 0.00048 23.1 5.2 56 4-73 90-145 (163)
333 COG1117 PstB ABC-type phosphat 66.8 29 0.00064 24.8 5.9 51 4-68 157-207 (253)
334 smart00487 DEXDc DEAD-like hel 66.8 6.2 0.00013 25.3 2.5 14 15-28 130-143 (201)
335 PRK15134 microcin C ABC transp 66.8 9.4 0.0002 29.8 3.9 56 5-73 165-220 (529)
336 cd01125 repA Hexameric Replica 66.7 16 0.00035 25.3 4.8 23 4-26 101-123 (239)
337 PRK13643 cbiO cobalt transport 66.7 9.1 0.0002 27.5 3.6 56 4-73 152-207 (288)
338 TIGR00968 3a0106s01 sulfate AB 66.6 11 0.00024 26.1 3.9 55 6-73 140-194 (237)
339 PRK13635 cbiO cobalt transport 66.6 11 0.00025 26.8 4.0 21 4-24 148-168 (279)
340 TIGR01817 nifA Nif-specific re 66.5 6.1 0.00013 30.9 2.8 13 14-26 290-302 (534)
341 PRK11831 putative ABC transpor 66.4 7.1 0.00015 27.6 2.9 57 4-73 151-207 (269)
342 COG3267 ExeA Type II secretory 66.2 48 0.001 24.1 7.3 84 11-107 128-215 (269)
343 PRK13648 cbiO cobalt transport 66.1 13 0.00028 26.2 4.2 57 4-73 150-206 (269)
344 cd03301 ABC_MalK_N The N-termi 65.7 11 0.00025 25.3 3.8 55 5-72 139-193 (213)
345 cd03256 ABC_PhnC_transporter A 65.7 11 0.00024 25.9 3.8 57 5-74 153-209 (241)
346 cd03230 ABC_DR_subfamily_A Thi 65.5 13 0.00029 24.3 3.9 55 5-73 104-158 (173)
347 PRK10418 nikD nickel transport 65.5 8 0.00017 27.1 3.0 56 5-73 149-204 (254)
348 TIGR02769 nickel_nikE nickel i 65.3 7.3 0.00016 27.5 2.8 57 4-73 158-214 (265)
349 PRK14258 phosphate ABC transpo 65.3 9.7 0.00021 26.8 3.4 58 4-74 158-215 (261)
350 PRK13543 cytochrome c biogenes 65.2 25 0.00053 23.9 5.4 58 4-75 145-202 (214)
351 PRK13765 ATP-dependent proteas 65.1 24 0.00052 28.7 5.9 44 60-105 277-328 (637)
352 cd03232 ABC_PDR_domain2 The pl 65.1 19 0.00042 24.0 4.7 54 4-71 116-169 (192)
353 COG1135 AbcC ABC-type metal io 65.1 8.9 0.00019 28.6 3.2 53 6-71 151-203 (339)
354 PRK06526 transposase; Provisio 65.0 13 0.00027 26.5 4.0 14 13-26 158-171 (254)
355 cd03282 ABC_MSH4_euk MutS4 hom 64.9 18 0.0004 24.7 4.6 51 11-74 105-155 (204)
356 PRK11701 phnK phosphonate C-P 64.9 15 0.00033 25.7 4.3 58 4-74 159-216 (258)
357 cd03300 ABC_PotA_N PotA is an 64.8 8.8 0.00019 26.4 3.1 56 4-72 138-193 (232)
358 TIGR03783 Bac_Flav_CT_G Bacter 64.5 13 0.00028 31.1 4.4 67 13-94 664-736 (829)
359 TIGR01189 ccmA heme ABC export 64.5 28 0.0006 23.2 5.4 55 6-74 137-191 (198)
360 PRK15112 antimicrobial peptide 64.5 7.5 0.00016 27.5 2.8 56 5-73 158-213 (267)
361 PRK13632 cbiO cobalt transport 64.4 13 0.00028 26.3 4.0 57 4-73 150-206 (271)
362 PHA00350 putative assembly pro 64.3 4.5 9.8E-05 30.9 1.6 72 14-88 81-161 (399)
363 PRK10419 nikE nickel transport 64.2 7.2 0.00016 27.6 2.6 57 4-73 159-215 (268)
364 cd03296 ABC_CysA_sulfate_impor 64.2 11 0.00024 26.0 3.5 56 4-72 144-199 (239)
365 cd03297 ABC_ModC_molybdenum_tr 64.1 11 0.00024 25.5 3.4 57 4-73 139-195 (214)
366 TIGR02982 heterocyst_DevA ABC 64.1 12 0.00026 25.5 3.6 22 4-25 149-170 (220)
367 PRK04296 thymidine kinase; Pro 64.0 36 0.00079 22.8 5.9 23 4-26 66-90 (190)
368 PRK09984 phosphonate/organopho 63.6 12 0.00026 26.2 3.7 57 4-73 160-216 (262)
369 PRK09544 znuC high-affinity zi 63.6 8.9 0.00019 27.0 3.0 57 4-73 128-184 (251)
370 KOG1969|consensus 63.5 54 0.0012 27.5 7.5 33 62-96 440-472 (877)
371 cd01123 Rad51_DMC1_radA Rad51_ 63.5 8.3 0.00018 26.4 2.8 61 11-72 111-172 (235)
372 TIGR01188 drrA daunorubicin re 63.3 11 0.00025 27.1 3.6 21 4-24 132-152 (302)
373 PRK15093 antimicrobial peptide 63.3 18 0.00039 26.5 4.6 57 4-73 166-222 (330)
374 PRK11022 dppD dipeptide transp 63.3 12 0.00025 27.5 3.6 57 4-73 161-217 (326)
375 cd03293 ABC_NrtD_SsuB_transpor 63.2 13 0.00028 25.3 3.7 56 4-72 139-194 (220)
376 KOG0481|consensus 63.1 6.9 0.00015 31.3 2.5 45 58-104 469-527 (729)
377 cd03284 ABC_MutS1 MutS1 homolo 63.0 25 0.00054 24.2 5.1 13 12-24 107-119 (216)
378 cd03273 ABC_SMC2_euk Eukaryoti 63.0 38 0.00082 23.6 6.1 56 13-90 187-242 (251)
379 PHA00520 packaging NTPase P4 63.0 9.4 0.0002 28.2 3.0 55 13-69 182-236 (330)
380 PRK08533 flagellar accessory p 62.9 30 0.00064 24.1 5.5 23 5-27 108-130 (230)
381 KOG0479|consensus 62.5 17 0.00038 29.6 4.6 62 15-89 399-481 (818)
382 cd03238 ABC_UvrA The excision 62.4 24 0.00053 23.6 4.8 66 4-90 95-162 (176)
383 TIGR02314 ABC_MetN D-methionin 62.1 15 0.00033 27.3 4.1 56 5-73 149-204 (343)
384 cd00267 ABC_ATPase ABC (ATP-bi 61.9 8.9 0.00019 24.6 2.6 55 6-74 90-144 (157)
385 cd03295 ABC_OpuCA_Osmoprotecti 61.9 12 0.00025 26.0 3.3 57 4-73 143-199 (242)
386 COG1122 CbiO ABC-type cobalt t 61.8 15 0.00032 26.0 3.8 56 6-74 148-203 (235)
387 cd03225 ABC_cobalt_CbiO_domain 61.8 15 0.00033 24.7 3.8 56 4-73 142-197 (211)
388 cd03299 ABC_ModC_like Archeal 61.7 12 0.00026 25.9 3.3 57 4-73 137-193 (235)
389 cd03253 ABCC_ATM1_transporter 61.7 32 0.00069 23.5 5.4 54 5-73 146-199 (236)
390 TIGR03608 L_ocin_972_ABC putat 61.7 21 0.00045 23.9 4.4 54 4-71 142-195 (206)
391 PRK13695 putative NTPase; Prov 61.3 25 0.00054 23.0 4.7 11 14-24 96-106 (174)
392 cd03258 ABC_MetN_methionine_tr 61.3 13 0.00028 25.5 3.4 57 4-73 148-204 (233)
393 PF01580 FtsK_SpoIIIE: FtsK/Sp 61.2 3.1 6.8E-05 28.0 0.3 52 13-71 153-204 (205)
394 PF07034 ORC3_N: Origin recogn 61.1 64 0.0014 23.8 7.7 72 14-102 199-276 (330)
395 PRK11153 metN DL-methionine tr 61.1 14 0.0003 27.3 3.7 57 4-73 148-204 (343)
396 PF00158 Sigma54_activat: Sigm 61.0 28 0.00061 23.0 4.9 54 14-84 93-155 (168)
397 cd03214 ABC_Iron-Siderophores_ 60.9 21 0.00045 23.5 4.3 56 5-73 106-161 (180)
398 cd03265 ABC_DrrA DrrA is the A 60.3 18 0.00038 24.6 3.9 57 4-73 139-195 (220)
399 cd03264 ABC_drug_resistance_li 60.3 25 0.00053 23.7 4.6 55 4-73 138-192 (211)
400 TIGR02323 CP_lyasePhnK phospho 60.2 15 0.00033 25.5 3.6 57 4-73 156-212 (253)
401 cd03294 ABC_Pro_Gly_Bertaine T 60.1 18 0.00039 25.6 4.1 55 5-72 169-223 (269)
402 cd03279 ABC_sbcCD SbcCD and ot 60.0 26 0.00057 23.8 4.7 46 14-73 151-196 (213)
403 PRK13646 cbiO cobalt transport 59.9 15 0.00032 26.3 3.6 57 4-73 153-209 (286)
404 PRK15424 propionate catabolism 59.9 17 0.00037 28.9 4.2 67 15-98 323-405 (538)
405 PRK14243 phosphate transporter 59.8 20 0.00043 25.3 4.2 56 4-74 159-214 (264)
406 COG1221 PspF Transcriptional r 59.6 22 0.00047 27.3 4.5 68 15-98 174-253 (403)
407 cd03229 ABC_Class3 This class 59.5 9.9 0.00021 25.1 2.5 58 4-74 108-165 (178)
408 PRK13633 cobalt transporter AT 59.5 15 0.00032 26.2 3.6 57 4-73 152-208 (280)
409 TIGR03258 PhnT 2-aminoethylpho 59.5 18 0.0004 27.0 4.2 55 5-72 146-201 (362)
410 cd03249 ABC_MTABC3_MDL1_MDL2 M 59.4 31 0.00067 23.7 5.1 21 5-25 148-168 (238)
411 PRK14259 phosphate ABC transpo 59.4 21 0.00044 25.3 4.2 55 4-73 162-216 (269)
412 PRK14247 phosphate ABC transpo 59.3 27 0.00059 24.2 4.8 54 5-73 155-208 (250)
413 PRK14269 phosphate ABC transpo 59.3 25 0.00055 24.3 4.6 55 4-73 150-204 (246)
414 PRK13639 cbiO cobalt transport 59.2 23 0.0005 25.1 4.5 56 4-73 145-200 (275)
415 PRK13891 conjugal transfer pro 59.2 25 0.00054 29.5 5.2 71 8-93 681-756 (852)
416 PF08423 Rad51: Rad51; InterP 59.0 8.2 0.00018 27.4 2.1 64 11-75 130-193 (256)
417 TIGR00960 3a0501s02 Type II (G 58.9 21 0.00046 24.1 4.1 56 4-73 146-201 (216)
418 COG1127 Ttg2A ABC-type transpo 58.8 9.6 0.00021 27.4 2.4 24 1-24 150-173 (263)
419 cd03247 ABCC_cytochrome_bd The 58.8 21 0.00046 23.4 4.0 55 4-73 106-160 (178)
420 TIGR00416 sms DNA repair prote 58.5 45 0.00097 25.9 6.2 27 3-29 159-185 (454)
421 cd03228 ABCC_MRP_Like The MRP 58.5 24 0.00052 23.0 4.2 54 6-74 106-159 (171)
422 cd03235 ABC_Metallic_Cations A 58.5 22 0.00048 23.9 4.2 55 5-73 141-195 (213)
423 PRK13536 nodulation factor exp 58.5 15 0.00033 27.2 3.6 57 4-74 180-236 (340)
424 TIGR02329 propionate_PrpR prop 58.4 21 0.00045 28.3 4.4 67 15-98 308-390 (526)
425 PRK13650 cbiO cobalt transport 58.4 21 0.00046 25.4 4.2 57 4-73 148-204 (279)
426 smart00534 MUTSac ATPase domai 58.3 19 0.00041 24.0 3.8 47 13-71 77-123 (185)
427 PRK10247 putative ABC transpor 58.3 22 0.00048 24.3 4.2 66 4-89 145-210 (225)
428 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 58.2 25 0.00054 24.1 4.4 56 5-74 151-206 (224)
429 PRK11000 maltose/maltodextrin 58.1 16 0.00034 27.4 3.6 20 5-24 142-161 (369)
430 PRK14700 recombination factor 57.9 27 0.00058 25.8 4.6 46 57-105 5-52 (300)
431 PRK13549 xylose transporter AT 57.9 17 0.00036 28.2 3.8 56 4-73 413-468 (506)
432 PRK10938 putative molybdenum t 57.9 22 0.00048 27.4 4.5 56 4-73 143-198 (490)
433 cd03268 ABC_BcrA_bacitracin_re 57.7 22 0.00047 23.9 4.0 55 5-73 135-189 (208)
434 cd03252 ABCC_Hemolysin The ABC 57.7 31 0.00066 23.7 4.8 55 4-73 146-200 (237)
435 KOG2170|consensus 57.5 33 0.00071 25.7 5.0 21 6-26 170-190 (344)
436 TIGR01288 nodI ATP-binding ABC 57.4 22 0.00048 25.6 4.2 56 4-73 143-198 (303)
437 PRK14250 phosphate ABC transpo 57.4 22 0.00048 24.6 4.1 56 5-73 140-195 (241)
438 cd03369 ABCC_NFT1 Domain 2 of 57.4 43 0.00093 22.4 5.4 21 4-24 133-153 (207)
439 PRK11248 tauB taurine transpor 57.3 18 0.00038 25.5 3.6 57 4-73 136-192 (255)
440 PRK10771 thiQ thiamine transpo 57.3 19 0.00041 24.7 3.7 56 5-73 138-193 (232)
441 TIGR03410 urea_trans_UrtE urea 57.3 21 0.00046 24.4 3.9 57 4-73 139-195 (230)
442 PRK04841 transcriptional regul 57.0 1.1E+02 0.0024 25.2 9.3 14 13-26 120-133 (903)
443 PRK09536 btuD corrinoid ABC tr 57.0 21 0.00046 27.2 4.2 56 4-73 147-202 (402)
444 cd03262 ABC_HisP_GlnQ_permease 57.0 15 0.00034 24.6 3.2 55 5-73 144-198 (213)
445 cd03263 ABC_subfamily_A The AB 56.9 28 0.0006 23.5 4.5 55 5-74 142-196 (220)
446 cd03250 ABCC_MRP_domain1 Domai 56.8 29 0.00062 23.2 4.5 22 4-25 135-156 (204)
447 COG1126 GlnQ ABC-type polar am 56.8 28 0.00061 24.8 4.4 49 5-66 145-193 (240)
448 PRK13637 cbiO cobalt transport 56.8 19 0.00041 25.8 3.7 56 4-72 152-207 (287)
449 PRK13641 cbiO cobalt transport 56.6 39 0.00084 24.2 5.3 21 4-24 153-173 (287)
450 TIGR03744 traC_PFL_4706 conjug 56.5 22 0.00048 29.9 4.5 68 13-95 732-802 (893)
451 cd03278 ABC_SMC_barmotin Barmo 56.5 41 0.00089 22.7 5.2 55 13-89 134-188 (197)
452 PRK13647 cbiO cobalt transport 56.4 22 0.00048 25.2 4.0 56 4-73 146-201 (274)
453 PRK13642 cbiO cobalt transport 56.3 22 0.00047 25.3 4.0 21 4-24 148-168 (277)
454 cd03269 ABC_putative_ATPase Th 56.3 23 0.00049 23.8 3.9 55 5-73 137-191 (210)
455 cd03219 ABC_Mj1267_LivG_branch 56.1 23 0.0005 24.2 4.0 55 5-73 152-206 (236)
456 TIGR02562 cas3_yersinia CRISPR 55.9 18 0.00039 31.3 3.8 42 12-66 591-632 (1110)
457 PRK10762 D-ribose transporter 55.6 19 0.00041 27.9 3.8 69 1-89 146-214 (501)
458 TIGR01618 phage_P_loop phage n 55.6 35 0.00076 23.9 4.8 55 13-67 80-142 (220)
459 PRK09493 glnQ glutamine ABC tr 55.6 38 0.00083 23.3 5.0 56 4-73 144-199 (240)
460 cd03222 ABC_RNaseL_inhibitor T 55.5 25 0.00055 23.5 4.0 21 4-24 79-99 (177)
461 KOG0922|consensus 55.4 18 0.0004 29.5 3.7 75 3-89 152-233 (674)
462 PRK10584 putative ABC transpor 55.3 22 0.00048 24.2 3.8 55 5-72 155-209 (228)
463 PRK14274 phosphate ABC transpo 55.3 25 0.00055 24.5 4.1 54 5-73 164-217 (259)
464 PRK11308 dppF dipeptide transp 55.2 24 0.00052 26.0 4.1 56 4-72 162-217 (327)
465 TIGR03269 met_CoM_red_A2 methy 55.1 21 0.00046 27.7 4.0 57 4-73 435-491 (520)
466 cd01127 TrwB Bacterial conjuga 55.1 43 0.00094 25.4 5.6 72 13-103 269-348 (410)
467 PRK10869 recombination and rep 55.0 30 0.00065 27.5 4.8 71 13-105 451-535 (553)
468 PF13191 AAA_16: AAA ATPase do 54.9 10 0.00022 24.6 1.9 13 14-26 150-162 (185)
469 cd03245 ABCC_bacteriocin_expor 54.8 39 0.00085 22.8 4.9 53 4-71 148-200 (220)
470 PRK10908 cell division protein 54.7 26 0.00056 23.8 4.0 56 4-73 145-200 (222)
471 cd00046 DEXDc DEAD-like helica 54.7 21 0.00046 21.2 3.3 15 14-28 103-117 (144)
472 cd03246 ABCC_Protease_Secretio 54.6 48 0.001 21.6 5.2 55 4-72 104-158 (173)
473 PF10923 DUF2791: P-loop Domai 54.5 33 0.00072 26.5 4.8 42 10-57 235-276 (416)
474 KOG1434|consensus 54.4 22 0.00049 26.0 3.7 61 14-75 211-271 (335)
475 PRK13830 conjugal transfer pro 54.3 22 0.00047 29.7 4.1 68 12-94 650-722 (818)
476 PRK13638 cbiO cobalt transport 54.0 25 0.00054 24.8 4.0 56 4-73 144-199 (271)
477 TIGR03411 urea_trans_UrtD urea 54.0 29 0.00062 23.9 4.2 55 4-73 151-205 (242)
478 PRK13640 cbiO cobalt transport 53.9 26 0.00056 25.0 4.0 21 4-24 151-171 (282)
479 PRK13873 conjugal transfer ATP 53.9 23 0.0005 29.4 4.2 68 12-94 633-705 (811)
480 PF04665 Pox_A32: Poxvirus A32 53.7 79 0.0017 22.5 7.7 72 14-104 98-169 (241)
481 cd03224 ABC_TM1139_LivF_branch 53.5 25 0.00055 23.8 3.8 54 5-72 141-194 (222)
482 COG2204 AtoC Response regulato 53.3 17 0.00038 28.4 3.2 75 15-106 236-330 (464)
483 TIGR01128 holA DNA polymerase 53.2 78 0.0017 22.3 7.1 75 15-105 47-124 (302)
484 PRK14261 phosphate ABC transpo 53.1 38 0.00082 23.5 4.7 55 5-74 158-212 (253)
485 PRK13649 cbiO cobalt transport 53.1 43 0.00093 23.7 5.0 56 4-73 153-208 (280)
486 cd03266 ABC_NatA_sodium_export 53.0 54 0.0012 22.1 5.4 56 4-73 144-199 (218)
487 PRK13636 cbiO cobalt transport 52.9 21 0.00046 25.5 3.5 57 4-73 149-205 (283)
488 COG2884 FtsE Predicted ATPase 52.8 60 0.0013 22.8 5.4 18 5-22 146-163 (223)
489 PRK09452 potA putrescine/sperm 52.6 26 0.00057 26.4 4.0 21 4-24 152-172 (375)
490 PRK11247 ssuB aliphatic sulfon 52.5 24 0.00051 25.0 3.6 56 4-72 141-196 (257)
491 cd02514 GT13_GLCNAC-TI GT13_GL 52.3 55 0.0012 24.4 5.6 50 5-70 91-140 (334)
492 PRK15056 manganese/iron transp 52.2 22 0.00047 25.2 3.4 55 4-72 150-204 (272)
493 TIGR03873 F420-0_ABC_ATP propo 52.1 22 0.00049 24.8 3.4 56 4-73 145-200 (256)
494 cd03237 ABC_RNaseL_inhibitor_d 52.1 23 0.0005 24.8 3.5 57 4-73 123-179 (246)
495 PRK14260 phosphate ABC transpo 52.0 20 0.00044 25.1 3.2 56 4-74 158-213 (259)
496 PRK15134 microcin C ABC transp 51.9 21 0.00045 27.9 3.5 57 4-73 433-489 (529)
497 COG1118 CysA ABC-type sulfate/ 51.8 24 0.00051 26.5 3.5 53 6-71 147-199 (345)
498 TIGR02142 modC_ABC molybdenum 51.6 25 0.00054 26.1 3.7 21 4-24 139-159 (354)
499 TIGR03522 GldA_ABC_ATP gliding 51.6 30 0.00064 25.0 4.1 21 4-24 141-161 (301)
500 PRK14245 phosphate ABC transpo 51.6 33 0.00071 23.8 4.2 55 4-73 154-208 (250)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-34 Score=205.61 Aligned_cols=106 Identities=40% Similarity=0.611 Sum_probs=99.7
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
.++++|+.|+.++||||||||||+++.+|..++...+.+.++++-+||++|||+.+.++|-||++||+++.||||++|||
T Consensus 232 lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPG 311 (406)
T COG1222 232 LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPG 311 (406)
T ss_pred HHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCC
Confidence 47899999999999999999999999999887766667889999999999999999999999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||+.|+||+||.++|.+||+.+.++
T Consensus 312 R~DRkIEfplPd~~gR~~Il~IHtrk 337 (406)
T COG1222 312 RFDRKIEFPLPDEEGRAEILKIHTRK 337 (406)
T ss_pred cccceeecCCCCHHHHHHHHHHHhhh
Confidence 99999999999999999999988753
No 2
>KOG0734|consensus
Probab=99.97 E-value=5.1e-32 Score=204.18 Aligned_cols=104 Identities=37% Similarity=0.619 Sum_probs=98.5
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
|++++|+.|++.+||||||||||++..+|...... ..++.+++||.+||++..+.+|+|||+||.|+.||+||.|||
T Consensus 384 RVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~---y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPG 460 (752)
T KOG0734|consen 384 RVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH---YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPG 460 (752)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH---HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCC
Confidence 78999999999999999999999999999776544 789999999999999999999999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhcc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKRK 108 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~~ 108 (110)
|||++|.+|.||...|.+|+++|+++.
T Consensus 461 RFD~~v~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 461 RFDRHVTVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred ccceeEecCCCCcccHHHHHHHHHhcC
Confidence 999999999999999999999998764
No 3
>KOG0733|consensus
Probab=99.97 E-value=8.8e-31 Score=199.62 Aligned_cols=101 Identities=49% Similarity=0.831 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCc
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGR 82 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~gr 82 (110)
++.+|++|+.++|||||+||+|+|++.|+... ++...+++++||++|||+....+|+|||+||+|+.||||++||||
T Consensus 593 VR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGR 669 (802)
T KOG0733|consen 593 VRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGR 669 (802)
T ss_pred HHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCc
Confidence 78999999999999999999999999998765 347899999999999999989999999999999999999999999
Q ss_pred cceEEEecCCCHHHHHHHHHHHhh
Q psy13774 83 LDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 83 fd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
||+.+++++|+.++|..|++.+.|
T Consensus 670 lDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 670 LDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred cCceeeecCCCHHHHHHHHHHHhc
Confidence 999999999999999999999988
No 4
>KOG0730|consensus
Probab=99.97 E-value=1.2e-30 Score=199.78 Aligned_cols=103 Identities=56% Similarity=0.901 Sum_probs=96.6
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
.|+++|..|++.+|||||+||||+++.+|+++.. +...+++++||++|||+....+|+|||+||+|+.||+|++|||
T Consensus 515 ~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPG 591 (693)
T KOG0730|consen 515 AIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPG 591 (693)
T ss_pred HHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCc
Confidence 5899999999999999999999999999975444 5899999999999999988899999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||+.|++|+||.++|.+|++.++++
T Consensus 592 RlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 592 RLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred ccceeEeecCccHHHHHHHHHHHHhc
Confidence 99999999999999999999988764
No 5
>KOG0736|consensus
Probab=99.96 E-value=8.5e-29 Score=192.22 Aligned_cols=105 Identities=49% Similarity=0.866 Sum_probs=95.4
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC--CCCEEEEEecCCCCCCCccccC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA--KKNVFIIGATNRPDIIDPAILR 79 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~v~vi~ttn~~~~ld~al~r 79 (110)
|+|++|++|+..+|||||+||+|++.++|+.++ ++.+.+.|+++++|.+||+++. .++|+|||+||+||.||||++|
T Consensus 752 NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sG-DSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLR 830 (953)
T KOG0736|consen 752 NVREVFERARSAAPCVIFFDELDSLAPNRGRSG-DSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLR 830 (953)
T ss_pred HHHHHHHHhhccCCeEEEeccccccCccCCCCC-CccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcC
Confidence 789999999999999999999999999997655 4577999999999999999984 5799999999999999999999
Q ss_pred CCccceEEEecCCCHHH-HHHHHHHHhhc
Q psy13774 80 PGRLDQLIYIPLPDEIW-LILSDKFLYKR 107 (110)
Q Consensus 80 ~grfd~~i~~~~P~~~~-R~~~~~~~~~~ 107 (110)
|||||+-+++++++..+ +..+++.+.|+
T Consensus 831 PGRFDKLvyvG~~~d~esk~~vL~AlTrk 859 (953)
T KOG0736|consen 831 PGRFDKLVYVGPNEDAESKLRVLEALTRK 859 (953)
T ss_pred CCccceeEEecCCccHHHHHHHHHHHHHH
Confidence 99999999999988555 67899988764
No 6
>KOG0733|consensus
Probab=99.96 E-value=4.1e-29 Score=190.57 Aligned_cols=102 Identities=35% Similarity=0.622 Sum_probs=94.3
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCC----CCEEEEEecCCCCCCCccc
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAK----KNVFIIGATNRPDIIDPAI 77 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~----~~v~vi~ttn~~~~ld~al 77 (110)
+|+++|..|+.++|||+||||||++.++|...+.+ -.++++++||+.||++... .+|+|||+||+|+.|||||
T Consensus 270 kiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqre---MErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaL 346 (802)
T KOG0733|consen 270 KIRELFDQAKSNAPCIVFIDEIDAITPKREEAQRE---MERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPAL 346 (802)
T ss_pred HHHHHHHHHhccCCeEEEeecccccccchhhHHHH---HHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHH
Confidence 68999999999999999999999999999875543 5789999999999998654 6899999999999999999
Q ss_pred cCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 78 LRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 78 ~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
+|+||||++|.++.|+..+|..|++.+.+
T Consensus 347 RRaGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 347 RRAGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred hccccccceeeecCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998765
No 7
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.6e-28 Score=185.42 Aligned_cols=107 Identities=42% Similarity=0.759 Sum_probs=98.9
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
++|+.|..|++++||||||||+|++..+|..+.+..+.+-++.++++|.+||++.++.+|+++++||+|+-+|||++|||
T Consensus 230 RVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpg 309 (596)
T COG0465 230 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPG 309 (596)
T ss_pred HHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCC
Confidence 68999999999999999999999999999766555555777899999999999998899999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhcc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKRK 108 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~~ 108 (110)
|||++|.++.||...|+.|++.+.+++
T Consensus 310 RFDRqI~V~~PDi~gRe~IlkvH~~~~ 336 (596)
T COG0465 310 RFDRQILVELPDIKGREQILKVHAKNK 336 (596)
T ss_pred CcceeeecCCcchhhHHHHHHHHhhcC
Confidence 999999999999999999999888754
No 8
>KOG0652|consensus
Probab=99.94 E-value=2.7e-27 Score=167.19 Aligned_cols=105 Identities=35% Similarity=0.569 Sum_probs=98.6
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCc
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGR 82 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~gr 82 (110)
++++|++|++.+|+||||||+|++..+|..+....+.+.++..-+||+++|++++..+|-||++||+.+-+|||++|+||
T Consensus 253 VRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGR 332 (424)
T KOG0652|consen 253 VRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGR 332 (424)
T ss_pred HHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhccc
Confidence 68999999999999999999999999998877666667888999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 83 LDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 83 fd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
+|+.|+||.|++++|..|++.+.++
T Consensus 333 LDRKIEfP~Pne~aRarIlQIHsRK 357 (424)
T KOG0652|consen 333 LDRKIEFPHPNEEARARILQIHSRK 357 (424)
T ss_pred ccccccCCCCChHHHHHHHHHhhhh
Confidence 9999999999999999999987764
No 9
>KOG0728|consensus
Probab=99.94 E-value=7.2e-27 Score=164.29 Aligned_cols=105 Identities=41% Similarity=0.593 Sum_probs=97.1
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
.++++|-.|++++|||||.||||++...|..++...+++.++..-+||+++|++....++-||.+||+.+.+|||++|||
T Consensus 228 mvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpg 307 (404)
T KOG0728|consen 228 MVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPG 307 (404)
T ss_pred HHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCC
Confidence 46899999999999999999999999999766655566788899999999999999999999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
|+|+.|+||+||+++|..|++.+.+
T Consensus 308 ridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 308 RIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred cccccccCCCCCHHHHHHHHHHhhh
Confidence 9999999999999999999998765
No 10
>KOG0731|consensus
Probab=99.94 E-value=7.5e-27 Score=182.38 Aligned_cols=107 Identities=43% Similarity=0.748 Sum_probs=97.2
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCC-CCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGG-SVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRP 80 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~-~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~ 80 (110)
|++++|..|+.++||||||||||++...|.+ .....+.+.+..+++||.+||++.+..+|+|+++||+++.+|+|++||
T Consensus 391 rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrp 470 (774)
T KOG0731|consen 391 RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRP 470 (774)
T ss_pred HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCC
Confidence 6899999999999999999999999999953 222334478899999999999998889999999999999999999999
Q ss_pred CccceEEEecCCCHHHHHHHHHHHhhcc
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDKFLYKRK 108 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~~~~~~~ 108 (110)
||||++|+++.|+..+|..|++.+++++
T Consensus 471 GRfdr~i~i~~p~~~~r~~i~~~h~~~~ 498 (774)
T KOG0731|consen 471 GRFDRQIQIDLPDVKGRASILKVHLRKK 498 (774)
T ss_pred CccccceeccCCchhhhHHHHHHHhhcc
Confidence 9999999999999999999999988754
No 11
>KOG0727|consensus
Probab=99.94 E-value=6.1e-27 Score=164.81 Aligned_cols=104 Identities=38% Similarity=0.578 Sum_probs=97.0
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
.++++|..|++++|+||||||+|++..+|...+...+.+.++++-+||++||++....+|-||.+||+.+.+|||++|||
T Consensus 236 mvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpg 315 (408)
T KOG0727|consen 236 MVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPG 315 (408)
T ss_pred HHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCc
Confidence 47899999999999999999999999999888766677889999999999999999999999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
|+|++|+||+||..++..+|....
T Consensus 316 rldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 316 RLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred cccccccCCCCchhhhhhhHHhhh
Confidence 999999999999999988877654
No 12
>KOG0735|consensus
Probab=99.94 E-value=2.6e-26 Score=177.59 Aligned_cols=103 Identities=50% Similarity=0.838 Sum_probs=95.9
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++++|.+|+..+|||+|+||+|++.++|+..+ .+...++++++|++|||..+-++|.|+|+|++|+.||||++|||
T Consensus 748 ~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs---TGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpG 824 (952)
T KOG0735|consen 748 NVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS---TGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPG 824 (952)
T ss_pred HHHHHHHHhhccCCeEEEeccccccCcccCCCC---CCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCC
Confidence 589999999999999999999999999996533 44889999999999999988899999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|+|+.+++++|+..+|.+|++.+...
T Consensus 825 RlD~~v~C~~P~~~eRl~il~~ls~s 850 (952)
T KOG0735|consen 825 RLDKLVYCPLPDEPERLEILQVLSNS 850 (952)
T ss_pred ccceeeeCCCCCcHHHHHHHHHHhhc
Confidence 99999999999999999999988753
No 13
>KOG0726|consensus
Probab=99.93 E-value=1.2e-26 Score=165.69 Aligned_cols=102 Identities=34% Similarity=0.549 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCc
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGR 82 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~gr 82 (110)
++++|..|..++|||+||||||++..+|..+++....+.++..-+||+++|++.+...|-||.+||+++.+|||++||||
T Consensus 267 vRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGr 346 (440)
T KOG0726|consen 267 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGR 346 (440)
T ss_pred HHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCc
Confidence 68999999999999999999999999998776655557778888999999999999999999999999999999999999
Q ss_pred cceEEEecCCCHHHHHHHHHHH
Q psy13774 83 LDQLIYIPLPDEIWLILSDKFL 104 (110)
Q Consensus 83 fd~~i~~~~P~~~~R~~~~~~~ 104 (110)
+|+.|+|+.||...++.||..+
T Consensus 347 IDrKIef~~pDe~TkkkIf~IH 368 (440)
T KOG0726|consen 347 IDRKIEFPLPDEKTKKKIFQIH 368 (440)
T ss_pred cccccccCCCchhhhceeEEEe
Confidence 9999999999999998887643
No 14
>KOG0738|consensus
Probab=99.93 E-value=3.8e-26 Score=167.41 Aligned_cols=100 Identities=42% Similarity=0.599 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCC-CC---EEEEEecCCCCCCCcccc
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAK-KN---VFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~-~~---v~vi~ttn~~~~ld~al~ 78 (110)
++-+|++|+.++|++|||||||+||.+|+++..++ .++++.++||.+|||+... .+ |+|+|+||.||+||.|++
T Consensus 293 vRlLFemARfyAPStIFiDEIDslcs~RG~s~EHE--aSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlr 370 (491)
T KOG0738|consen 293 VRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHE--ASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALR 370 (491)
T ss_pred HHHHHHHHHHhCCceeehhhHHHHHhcCCCccchh--HHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHH
Confidence 67899999999999999999999999998876544 7899999999999998553 34 999999999999999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
| ||.++|++|+||.++|..+++.+++
T Consensus 371 R--RlEKRIyIPLP~~~~R~~Li~~~l~ 396 (491)
T KOG0738|consen 371 R--RLEKRIYIPLPDAEARSALIKILLR 396 (491)
T ss_pred H--HHhhheeeeCCCHHHHHHHHHHhhc
Confidence 9 9999999999999999999888775
No 15
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.9e-25 Score=169.94 Aligned_cols=103 Identities=46% Similarity=0.726 Sum_probs=95.2
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++++|..|++.+||||||||+|++++.|+.+... ...+++++++.+|+++....+|+||++||+|+.+|+|++|||
T Consensus 323 ~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~---~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~g 399 (494)
T COG0464 323 NIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG---SGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPG 399 (494)
T ss_pred HHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch---HHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccC
Confidence 68999999999999999999999999999765433 347999999999999988899999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||..|++++||.++|..+++.+++.
T Consensus 400 Rfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 400 RFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred ccceEeecCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999988873
No 16
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=1.2e-24 Score=159.63 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=84.2
Q ss_pred cHHHHHHHHHhc-----CCeEEEEcccccccccCCCCCCCCCCchHHHH-HHHHHhhhcC------------CCCCCEEE
Q psy13774 2 RIATGASMARAA-----APCVLFFDELDSIAKSRGGSVGDGGGAADRVI-NQILTEMDGM------------GAKKNVFI 63 (110)
Q Consensus 2 ~l~~~F~~A~~~-----~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~-~~ll~~ld~~------------~~~~~v~v 63 (110)
+|+++|..|++. +||||||||||++++.++.++.. ...+++ .+|++.+|+. ....+|+|
T Consensus 195 ~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~t---v~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~V 271 (413)
T PLN00020 195 LIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYT---VNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPI 271 (413)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcc---hHHHHHHHHHHHHhcCCccccccccccccccCCCceE
Confidence 689999999864 69999999999999998643322 344554 7999998863 23468999
Q ss_pred EEecCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 64 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 64 i~ttn~~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|+|||+|+.|||+|+||||||+.+ .+|+.++|..|++.++++
T Consensus 272 IaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~ 313 (413)
T PLN00020 272 IVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRD 313 (413)
T ss_pred EEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999976 489999999999988764
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.92 E-value=2.1e-24 Score=160.76 Aligned_cols=106 Identities=39% Similarity=0.584 Sum_probs=94.0
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
.++++|..|+.++||||||||+|+++.+|.+.....+....+.+.+++++++++....+++||++||+++.+||+++|||
T Consensus 226 ~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~G 305 (398)
T PTZ00454 226 MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPG 305 (398)
T ss_pred HHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCC
Confidence 47889999999999999999999999888554433334567889999999999988889999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||+.|++++|+.++|..|++.++++
T Consensus 306 Rfd~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 306 RLDRKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred cccEEEEeCCcCHHHHHHHHHHHHhc
Confidence 99999999999999999999987653
No 18
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=2.3e-24 Score=170.44 Aligned_cols=104 Identities=49% Similarity=0.756 Sum_probs=93.7
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++++|..|++.+||||||||+|+++++|+.... .....+++++|+++||++....+++||+|||+|+.||+|++|||
T Consensus 534 ~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpg 611 (733)
T TIGR01243 534 AIREIFRKARQAAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPG 611 (733)
T ss_pred HHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCC
Confidence 5789999999999999999999999998864332 23568899999999999988889999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||+.|++++||.++|..||+.+.++
T Consensus 612 Rfd~~i~v~~Pd~~~R~~i~~~~~~~ 637 (733)
T TIGR01243 612 RFDRLILVPPPDEEARKEIFKIHTRS 637 (733)
T ss_pred ccceEEEeCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999877653
No 19
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.91 E-value=1.7e-24 Score=164.84 Aligned_cols=105 Identities=42% Similarity=0.613 Sum_probs=91.5
Q ss_pred cHHHHHHHHHhc----CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccc
Q psy13774 2 RIATGASMARAA----APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAI 77 (110)
Q Consensus 2 ~l~~~F~~A~~~----~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al 77 (110)
+++.+|+.|+.. .||||||||+|+++.+|+..... ...++++++|+++||++....+++||+|||+++.||||+
T Consensus 273 ~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~--d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpAL 350 (512)
T TIGR03689 273 QIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSS--DVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAI 350 (512)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccc--hHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhh
Confidence 467889988874 69999999999999888543322 245678899999999998778999999999999999999
Q ss_pred cCCCccceEEEecCCCHHHHHHHHHHHhhcc
Q psy13774 78 LRPGRLDQLIYIPLPDEIWLILSDKFLYKRK 108 (110)
Q Consensus 78 ~r~grfd~~i~~~~P~~~~R~~~~~~~~~~~ 108 (110)
+||||||.+|+|++|+.++|..|++.++...
T Consensus 351 lRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~ 381 (512)
T TIGR03689 351 LRPGRLDVKIRIERPDAEAAADIFSKYLTDS 381 (512)
T ss_pred cCccccceEEEeCCCCHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999887653
No 20
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.91 E-value=2.3e-24 Score=163.78 Aligned_cols=102 Identities=26% Similarity=0.470 Sum_probs=90.4
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++++|+.|+..+||||||||+|.++.++.+.. .++...+++++|+++|++ ...+|+||+|||+++.|||+++|||
T Consensus 306 ~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~--d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR~G 381 (489)
T CHL00195 306 RMRQMIRIAEALSPCILWIDEIDKAFSNSESKG--DSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILRKG 381 (489)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhhccccCCC--CchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHhCCC
Confidence 588999999999999999999999987654322 234678999999999986 4578999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||+.+++++|+.++|..|++.++++
T Consensus 382 RFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 382 RFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 99999999999999999999988865
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.91 E-value=9.4e-25 Score=153.85 Aligned_cols=102 Identities=38% Similarity=0.592 Sum_probs=92.6
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+|+++|++|++.+|||+||||+|++.-.|.-.. -.+....+++.||+.||+++++.+|+.|++||+|+.||||+++
T Consensus 198 ~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe--lRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs-- 273 (368)
T COG1223 198 RIHELYERARKAAPCIVFIDELDAIALDRRYQE--LRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS-- 273 (368)
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH--hcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--
Confidence 689999999999999999999999998775322 2235778999999999999999999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
||...|+|.+||.++|..|++++.++
T Consensus 274 RFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 274 RFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred hhhheeeeeCCChHHHHHHHHHHHHh
Confidence 99999999999999999999988764
No 22
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.91 E-value=2e-24 Score=179.39 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=81.0
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC---CCCCEEEEEecCCCCCCCcccc
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG---AKKNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---~~~~v~vi~ttn~~~~ld~al~ 78 (110)
+|+.+|+.|++++||||||||||+++.+.. ....+++|+++|++.. ...+|+||||||+|+.||||++
T Consensus 1720 rIr~lFelARk~SPCIIFIDEIDaL~~~ds---------~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALL 1790 (2281)
T CHL00206 1720 YITLQFELAKAMSPCIIWIPNIHDLNVNES---------NYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALI 1790 (2281)
T ss_pred HHHHHHHHHHHCCCeEEEEEchhhcCCCcc---------ceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHc
Confidence 478899999999999999999999986521 1224788999999763 3468999999999999999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHHH
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKFL 104 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~~ 104 (110)
||||||+.|+++.|+..+|+.++..+
T Consensus 1791 RPGRFDR~I~Ir~Pd~p~R~kiL~IL 1816 (2281)
T CHL00206 1791 APNKLNTCIKIRRLLIPQQRKHFFTL 1816 (2281)
T ss_pred CCCCCCeEEEeCCCCchhHHHHHHHH
Confidence 99999999999999999998776654
No 23
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.91 E-value=3e-24 Score=163.61 Aligned_cols=106 Identities=41% Similarity=0.742 Sum_probs=94.1
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++++|+.|+.++||||||||+|.++.++............+.+++|+.+||++....+++||+|||+|+.|||+++|||
T Consensus 135 ~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~g 214 (495)
T TIGR01241 135 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPG 214 (495)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCC
Confidence 57899999999999999999999999887653322233566889999999999988889999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||+.|++++|+.++|..|++.+++.
T Consensus 215 Rfd~~i~i~~Pd~~~R~~il~~~l~~ 240 (495)
T TIGR01241 215 RFDRQVVVDLPDIKGREEILKVHAKN 240 (495)
T ss_pred cceEEEEcCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999988764
No 24
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.91 E-value=4.8e-24 Score=166.64 Aligned_cols=106 Identities=40% Similarity=0.747 Sum_probs=94.8
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|..|+..+||||||||+|+++..|............+.++++|.+||++....+++||+|||+|+.||++++|||
T Consensus 232 ~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~Rpg 311 (644)
T PRK10733 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPG 311 (644)
T ss_pred HHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCc
Confidence 46889999999999999999999999888654333333567899999999999988889999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||++|++++||.++|..|++.++++
T Consensus 312 Rfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 312 RFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred ccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999999988764
No 25
>KOG0739|consensus
Probab=99.90 E-value=1.3e-24 Score=155.56 Aligned_cols=99 Identities=35% Similarity=0.590 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC-CCCEEEEEecCCCCCCCccccCCC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA-KKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
++.+|++|+++.||||||||||++|..|+.+.+. ..+++..+||-+|+++.. +++|+|+|+||-||.||.|++|
T Consensus 214 VknLFemARe~kPSIIFiDEiDslcg~r~enEse---asRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR-- 288 (439)
T KOG0739|consen 214 VKNLFEMARENKPSIIFIDEIDSLCGSRSENESE---ASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR-- 288 (439)
T ss_pred HHHHHHHHHhcCCcEEEeehhhhhccCCCCCchH---HHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH--
Confidence 5789999999999999999999999998765543 789999999999999955 4699999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
||+++|++|+|+..+|..+|+..+.
T Consensus 289 RFekRIYIPLPe~~AR~~MF~lhlG 313 (439)
T KOG0739|consen 289 RFEKRIYIPLPEAHARARMFKLHLG 313 (439)
T ss_pred HhhcceeccCCcHHHhhhhheeccC
Confidence 9999999999999999998887653
No 26
>KOG0729|consensus
Probab=99.90 E-value=4.9e-24 Score=151.15 Aligned_cols=105 Identities=35% Similarity=0.576 Sum_probs=95.6
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
.++++|+.|+...-||||+||+|++...|.......+++.++..-++++++|++....++-|+.+||+|+.+|||++|||
T Consensus 258 mvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpg 337 (435)
T KOG0729|consen 258 MVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPG 337 (435)
T ss_pred HHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCc
Confidence 47899999999999999999999999999776655566788888999999999999999999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
|+|+.++|++||.+.|..|++.+.+
T Consensus 338 rldrkvef~lpdlegrt~i~kihak 362 (435)
T KOG0729|consen 338 RLDRKVEFGLPDLEGRTHIFKIHAK 362 (435)
T ss_pred ccccceeccCCcccccceeEEEecc
Confidence 9999999999999999988876543
No 27
>CHL00176 ftsH cell division protein; Validated
Probab=99.89 E-value=3.2e-23 Score=161.57 Aligned_cols=106 Identities=40% Similarity=0.706 Sum_probs=94.8
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|+.|+.++||||||||+|+++..|+......+......+++|+..+|++....+++||++||+++.+|++++|||
T Consensus 263 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpG 342 (638)
T CHL00176 263 RVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPG 342 (638)
T ss_pred HHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccc
Confidence 46789999999999999999999999887654433344667889999999999988889999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||+.|++++|+.++|..|++.+++.
T Consensus 343 RFd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 343 RFDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred cCceEEEECCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999988765
No 28
>KOG0651|consensus
Probab=99.89 E-value=4.4e-24 Score=153.01 Aligned_cols=104 Identities=38% Similarity=0.578 Sum_probs=93.5
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
.|++.|..|+.+.|||||+||||+....+.+.....+...++.+-+|+++|+++....+|-+|.|||+|+.|||+|+|||
T Consensus 213 lIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpG 292 (388)
T KOG0651|consen 213 LIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPG 292 (388)
T ss_pred HHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCc
Confidence 48999999999999999999999999988554444455677888899999999988999999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
|+|+.+++|+||+..|..+++...
T Consensus 293 Rldrk~~iPlpne~~r~~I~Kih~ 316 (388)
T KOG0651|consen 293 RLDRKVEIPLPNEQARLGILKIHV 316 (388)
T ss_pred cccceeccCCcchhhceeeEeecc
Confidence 999999999999999998877643
No 29
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.89 E-value=5.8e-23 Score=152.74 Aligned_cols=106 Identities=44% Similarity=0.667 Sum_probs=93.0
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
.++.+|+.|+.++||||||||+|+++.++.+.....+....+.+.+++..++++....++.||+|||+++.+|++++|||
T Consensus 212 ~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpg 291 (389)
T PRK03992 212 LVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPG 291 (389)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCc
Confidence 36789999999999999999999999887655433334566788889999999877789999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||..|++++|+.++|..|++.++++
T Consensus 292 Rfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 292 RFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred cCceEEEECCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999987753
No 30
>KOG0732|consensus
Probab=99.88 E-value=5e-23 Score=164.82 Aligned_cols=102 Identities=35% Similarity=0.606 Sum_probs=94.1
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|+.|++++|+|||+||||-|.+.|++.+.. ....++++||..|||+.+.++|+|||+||+|+.+|||++|||
T Consensus 351 qlrllFeeA~k~qPSIIffdeIdGlapvrSskqEq---ih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPg 427 (1080)
T KOG0732|consen 351 QLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQ---IHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPG 427 (1080)
T ss_pred HHHHHHHHHhccCceEEeccccccccccccchHHH---hhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCc
Confidence 57899999999999999999999999999765543 567899999999999999999999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
|||+.++|++|+.++|..|+....+
T Consensus 428 rfdref~f~lp~~~ar~~Il~Ihtr 452 (1080)
T KOG0732|consen 428 RFDREFYFPLPDVDARAKILDIHTR 452 (1080)
T ss_pred ccceeEeeeCCchHHHHHHHHHhcc
Confidence 9999999999999999998876554
No 31
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.88 E-value=8.7e-23 Score=153.42 Aligned_cols=105 Identities=31% Similarity=0.498 Sum_probs=92.4
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
.++.+|..|+.++||||||||+|+++.++............+.+.+++.+++++....++.||++||+++.+|++++|||
T Consensus 264 ~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpG 343 (438)
T PTZ00361 264 LVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPG 343 (438)
T ss_pred HHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCC
Confidence 36889999999999999999999999888654433333556788899999999877789999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
|||+.|+|++||.++|..|++.+++
T Consensus 344 Rfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 344 RIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 32
>KOG0730|consensus
Probab=99.87 E-value=3.3e-22 Score=153.67 Aligned_cols=101 Identities=34% Similarity=0.558 Sum_probs=94.5
Q ss_pred cHHHHHHHHHhcC-CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCC
Q psy13774 2 RIATGASMARAAA-PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRP 80 (110)
Q Consensus 2 ~l~~~F~~A~~~~-P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~ 80 (110)
+++++|+.|.+++ |+||||||+|+++++|.+... ...++.++++++||+.....+++|+++||+|+.||++++|
T Consensus 265 ~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR- 339 (693)
T KOG0730|consen 265 NLRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR- 339 (693)
T ss_pred HHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-
Confidence 5899999999999 999999999999999977553 5789999999999999888999999999999999999999
Q ss_pred CccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
||||+.++++.|+..+|..+++.+.++
T Consensus 340 gRfd~ev~IgiP~~~~RldIl~~l~k~ 366 (693)
T KOG0730|consen 340 GRFDREVEIGIPGSDGRLDILRVLTKK 366 (693)
T ss_pred CCCcceeeecCCCchhHHHHHHHHHHh
Confidence 999999999999999999999988764
No 33
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.85 E-value=7.5e-21 Score=140.19 Aligned_cols=105 Identities=41% Similarity=0.656 Sum_probs=91.3
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
.++.+|..|+..+|+||||||+|.++.++.+..........+.+.+++..++++....++.||+|||+++.+|++++|||
T Consensus 203 ~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~g 282 (364)
T TIGR01242 203 LVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPG 282 (364)
T ss_pred HHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcc
Confidence 36789999999999999999999999877654433333556778889999998877789999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
|||+.|++++|+.++|..|++.+.+
T Consensus 283 rfd~~i~v~~P~~~~r~~Il~~~~~ 307 (364)
T TIGR01242 283 RFDRIIEVPLPDFEGRLEILKIHTR 307 (364)
T ss_pred cCceEEEeCCcCHHHHHHHHHHHHh
Confidence 9999999999999999999988764
No 34
>KOG0740|consensus
Probab=99.84 E-value=3.4e-21 Score=143.46 Aligned_cols=102 Identities=35% Similarity=0.491 Sum_probs=90.2
Q ss_pred CcHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC--CCCEEEEEecCCCCCCCcccc
Q psy13774 1 MRIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA--KKNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 1 ~~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~v~vi~ttn~~~~ld~al~ 78 (110)
+.++.+|+.|+..+|+||||||+|.++.+|..... ....++..++|.++++... .++|+||||||.||.+|.|++
T Consensus 232 K~vralf~vAr~~qPsvifidEidslls~Rs~~e~---e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~ 308 (428)
T KOG0740|consen 232 KLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEH---ESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAAR 308 (428)
T ss_pred HHHHHHHHHHHhcCCeEEEechhHHHHhhcCCccc---ccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHH
Confidence 35899999999999999999999999999944332 3677899999999988744 469999999999999999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
| ||-+.+++|+|++++|..+++.++++
T Consensus 309 R--rf~kr~yiplPd~etr~~~~~~ll~~ 335 (428)
T KOG0740|consen 309 R--RFVKRLYIPLPDYETRSLLWKQLLKE 335 (428)
T ss_pred H--HhhceeeecCCCHHHHHHHHHHHHHh
Confidence 9 99999999999999999988888764
No 35
>KOG0737|consensus
Probab=99.84 E-value=3.8e-21 Score=140.10 Aligned_cols=100 Identities=32% Similarity=0.457 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCC--CEEEEEecCCCCCCCccccCC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKK--NVFIIGATNRPDIIDPAILRP 80 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~--~v~vi~ttn~~~~ld~al~r~ 80 (110)
++.+|..|.+.+||||||||+|.++..|.+++ .+....+.++|....||+.+++ +|+|+|+||+|.++|.|++|
T Consensus 175 v~AvFslAsKl~P~iIFIDEvds~L~~R~s~d---HEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR- 250 (386)
T KOG0737|consen 175 VKAVFSLASKLQPSIIFIDEVDSFLGQRRSTD---HEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR- 250 (386)
T ss_pred HHHHHhhhhhcCcceeehhhHHHHHhhcccch---HHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH-
Confidence 57899999999999999999999999984332 2367788899999999998765 59999999999999999999
Q ss_pred CccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|+.+++++++|+..+|..|++.++++
T Consensus 251 -R~p~rf~V~lP~~~qR~kILkviLk~ 276 (386)
T KOG0737|consen 251 -RLPRRFHVGLPDAEQRRKILKVILKK 276 (386)
T ss_pred -hCcceeeeCCCchhhHHHHHHHHhcc
Confidence 99999999999999999999998864
No 36
>KOG0741|consensus
Probab=99.83 E-value=7.6e-22 Score=149.41 Aligned_cols=104 Identities=40% Similarity=0.627 Sum_probs=92.6
Q ss_pred cHHHHHHHHHhcC--------CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 2 RIATGASMARAAA--------PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 2 ~l~~~F~~A~~~~--------P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
|++++|+-|.+.. --||++||||++|..|++..+. .+....++++||+.||++..-++++|||.||+.+.|
T Consensus 304 NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~-TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlI 382 (744)
T KOG0741|consen 304 NVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS-TGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLI 382 (744)
T ss_pred HHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC-CCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhH
Confidence 6899999987533 2399999999999999776543 458899999999999999888999999999999999
Q ss_pred CccccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 74 DPAILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 74 d~al~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
|.||+|||||..++++.+||++.|.+|++.+.+
T Consensus 383 DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~ 415 (744)
T KOG0741|consen 383 DEALLRPGRLEVQMEISLPDEKGRLQILKIHTK 415 (744)
T ss_pred HHHhcCCCceEEEEEEeCCCccCceEEEEhhhh
Confidence 999999999999999999999999999887664
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.78 E-value=8.9e-19 Score=138.82 Aligned_cols=102 Identities=41% Similarity=0.623 Sum_probs=90.8
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|+.|..++|+||||||+|.+++++..... ....++.++|++.++++....+++||++||+++.+|++++|||
T Consensus 259 ~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~---~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~g 335 (733)
T TIGR01243 259 RLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG---EVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPG 335 (733)
T ss_pred HHHHHHHHHHhcCCcEEEeehhhhhcccccCCcc---hHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCch
Confidence 4788999999999999999999999988754332 2457789999999999988889999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
|||..+++++|+.++|..|++.+.+
T Consensus 336 Rfd~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 336 RFDREIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred hccEEEEeCCcCHHHHHHHHHHHhc
Confidence 9999999999999999999986654
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.69 E-value=1.2e-16 Score=101.26 Aligned_cols=86 Identities=40% Similarity=0.657 Sum_probs=73.8
Q ss_pred cHHHHHHHHHhcC-CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCC-CCEEEEEecCCCCCCCccccC
Q psy13774 2 RIATGASMARAAA-PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAK-KNVFIIGATNRPDIIDPAILR 79 (110)
Q Consensus 2 ~l~~~F~~A~~~~-P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~-~~v~vi~ttn~~~~ld~al~r 79 (110)
++..+|..|+..+ ||||||||+|.++.+... ..+.....+++.++..++..... .++++|+|||.++.+|++++|
T Consensus 45 ~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~---~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~ 121 (132)
T PF00004_consen 45 KIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQP---SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR 121 (132)
T ss_dssp HHHHHHHHHHHTSTSEEEEEETGGGTSHHCST---SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS
T ss_pred ccccccccccccccceeeeeccchhccccccc---ccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh
Confidence 4788999999998 999999999999988722 22346778899999999998665 579999999999999999998
Q ss_pred CCccceEEEecC
Q psy13774 80 PGRLDQLIYIPL 91 (110)
Q Consensus 80 ~grfd~~i~~~~ 91 (110)
|||+..|++++
T Consensus 122 -~rf~~~i~~~~ 132 (132)
T PF00004_consen 122 -SRFDRRIEFPL 132 (132)
T ss_dssp -TTSEEEEEE-S
T ss_pred -CCCcEEEEcCC
Confidence 89999999974
No 39
>KOG0743|consensus
Probab=99.60 E-value=2.5e-15 Score=112.26 Aligned_cols=93 Identities=22% Similarity=0.301 Sum_probs=74.9
Q ss_pred CCeEEEEcccccccccCCCCCCCCC----CchHHHHHHHHHhhhcCCCCC--CEEEEEecCCCCCCCccccCCCccceEE
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGG----GAADRVINQILTEMDGMGAKK--NVFIIGATNRPDIIDPAILRPGRLDQLI 87 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~----~~~~~~~~~ll~~ld~~~~~~--~v~vi~ttn~~~~ld~al~r~grfd~~i 87 (110)
.-|||+|+|||+-+..+........ ....-.++.||+.+||+.+.. --++|.|||+++.|||||+||||.|.+|
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 3489999999998764443332111 123457889999999998754 6889999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHhh
Q psy13774 88 YIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 88 ~~~~P~~~~R~~~~~~~~~ 106 (110)
+++..+.++=+.+++.|+.
T Consensus 366 ~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred EcCCCCHHHHHHHHHHhcC
Confidence 9999999998877777764
No 40
>KOG0742|consensus
Probab=99.58 E-value=4.9e-15 Score=110.33 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=85.9
Q ss_pred cHHHHHHHHHhcCC-eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCC
Q psy13774 2 RIATGASMARAAAP-CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRP 80 (110)
Q Consensus 2 ~l~~~F~~A~~~~P-~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~ 80 (110)
+|+++|.+|++... -++||||+|+++..|..+..+ +.....++.||-.-.+ .+..++++.+||+|.++|-|+-.
T Consensus 430 kiH~lFDWakkS~rGLllFIDEADAFLceRnktymS--EaqRsaLNAlLfRTGd--qSrdivLvlAtNrpgdlDsAV~D- 504 (630)
T KOG0742|consen 430 KIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMS--EAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDSAVND- 504 (630)
T ss_pred HHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhc--HHHHHHHHHHHHHhcc--cccceEEEeccCCccchhHHHHh-
Confidence 58999999998664 689999999999999776543 3667788888755443 35689999999999999999998
Q ss_pred CccceEEEecCCCHHHHHHHHHHHhhccc
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDKFLYKRKI 109 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~~~~~~~~ 109 (110)
|||..|+||+|..++|..++..|+.+.|
T Consensus 505 -Ride~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 505 -RIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred -hhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 9999999999999999998888876654
No 41
>KOG0744|consensus
Probab=99.33 E-value=8.5e-13 Score=95.87 Aligned_cols=101 Identities=27% Similarity=0.327 Sum_probs=84.8
Q ss_pred HHHHHHHHHhc-----CCeEEEEcccccccccCCC-CCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCcc
Q psy13774 3 IATGASMARAA-----APCVLFFDELDSIAKSRGG-SVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPA 76 (110)
Q Consensus 3 l~~~F~~A~~~-----~P~ii~iDeiD~l~~~r~~-~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~a 76 (110)
++++|+.-.+. .-..|+|||+|++...|.+ +..+++...-++++.+|+++|.++...+|++.+|+|-.+.||.|
T Consensus 234 V~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~A 313 (423)
T KOG0744|consen 234 VAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVA 313 (423)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHH
Confidence 45566554332 1246789999999998844 34556678899999999999999999999999999999999999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
+.. |-|-+.++++|+..+|..|++..+
T Consensus 314 fVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 314 FVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred hhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 999 999999999999999998887654
No 42
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.5e-11 Score=94.03 Aligned_cols=101 Identities=41% Similarity=0.623 Sum_probs=89.4
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|..|+..+|+++++||+|.+.+.+.. .......++.++++..++++.... +++++.||.+..+|+++++||
T Consensus 64 ~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~ 139 (494)
T COG0464 64 RLRELFEEAEKLAPSIIFIDEIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPG 139 (494)
T ss_pred HHHHHHHHHHHhCCCeEeechhhhcccCccc---cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCcc
Confidence 5788999999999999999999999999876 223478899999999999998444 999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
||+..+.+..|+...|..+++...+
T Consensus 140 ~~~~~~~~~~~~~~~~~ei~~~~~~ 164 (494)
T COG0464 140 RFDREIEVNLPDEAGRLEILQIHTR 164 (494)
T ss_pred ccceeeecCCCCHHHHHHHHHHHHh
Confidence 9999999999999999877766543
No 43
>KOG0735|consensus
Probab=99.26 E-value=3.1e-11 Score=94.82 Aligned_cols=106 Identities=16% Similarity=0.282 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhh-hcCCC-CCCEEEEEecCCCCCCCccccCC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEM-DGMGA-KKNVFIIGATNRPDIIDPAILRP 80 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~l-d~~~~-~~~v~vi~ttn~~~~ld~al~r~ 80 (110)
++.+|..|..++|+||++|++|.++...+..++ +.+.....++.+++++ ..+.. +..+.+||+.+..+.++|-|..|
T Consensus 483 l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~-q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~ 561 (952)
T KOG0735|consen 483 LNNVFSEALWYAPSIIVLDDLDCLASASSNENG-QDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSP 561 (952)
T ss_pred HHHHHHHHHhhCCcEEEEcchhhhhccCcccCC-cchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCc
Confidence 567899999999999999999999984333322 2334445556666554 33333 34679999999999999999999
Q ss_pred CccceEEEecCCCHHHHHHHHHHHhhccc
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDKFLYKRKI 109 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~~~~~~~~ 109 (110)
++|+.++.++.|+..+|.+|++++..++.
T Consensus 562 ~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 562 LLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred cceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 99999999999999999999999887754
No 44
>KOG0736|consensus
Probab=99.22 E-value=4.8e-11 Score=94.29 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=80.5
Q ss_pred CcHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhh---cCCCCCCEEEEEecCCCCCCCccc
Q psy13774 1 MRIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMD---GMGAKKNVFIIGATNRPDIIDPAI 77 (110)
Q Consensus 1 ~~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld---~~~~~~~v~vi~ttn~~~~ld~al 77 (110)
+++...|..|+.++|+|||+-++|.+..+.++. ...++.+.+-.++. ......+++||++|+..+.+++.+
T Consensus 477 tkl~~~f~~a~~~~pavifl~~~dvl~id~dgg------ed~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i 550 (953)
T KOG0736|consen 477 TKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGG------EDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADI 550 (953)
T ss_pred HHHHHHHHHHhhcCceEEEEeccceeeecCCCc------hhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHH
Confidence 468899999999999999999999998555441 33444443333332 333567999999999999999999
Q ss_pred cCCCccceEEEecCCCHHHHHHHHHHHhhcc
Q psy13774 78 LRPGRLDQLIYIPLPDEIWLILSDKFLYKRK 108 (110)
Q Consensus 78 ~r~grfd~~i~~~~P~~~~R~~~~~~~~~~~ 108 (110)
++ -|-++|.++.|++++|.+|+++|....
T Consensus 551 ~~--~f~~ei~~~~lse~qRl~iLq~y~~~~ 579 (953)
T KOG0736|consen 551 QS--LFLHEIEVPALSEEQRLEILQWYLNHL 579 (953)
T ss_pred HH--hhhhhccCCCCCHHHHHHHHHHHHhcc
Confidence 99 999999999999999999999987643
No 45
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.16 E-value=7.2e-11 Score=94.30 Aligned_cols=92 Identities=23% Similarity=0.220 Sum_probs=69.7
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC-----CCCcc
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD-----IIDPA 76 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~-----~ld~a 76 (110)
+++.+|..+++..|+||||||+|.++..++.+.. .....+.|...+ ....+.+||+|+.++ ..|++
T Consensus 266 rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g-----~~d~~nlLkp~L----~~g~i~vIgATt~~E~~~~~~~D~A 336 (758)
T PRK11034 266 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG-----QVDAANLIKPLL----SSGKIRVIGSTTYQEFSNIFEKDRA 336 (758)
T ss_pred HHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc-----HHHHHHHHHHHH----hCCCeEEEecCChHHHHHHhhccHH
Confidence 4678888888888999999999999877643221 122222222222 356899999999875 58999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
+.| ||+ .|+++.|+.+++..|++.+.
T Consensus 337 L~r--RFq-~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 337 LAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 999 996 79999999999999888654
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.12 E-value=1.8e-10 Score=91.85 Aligned_cols=92 Identities=23% Similarity=0.190 Sum_probs=69.5
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC-----CCCCcc
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP-----DIIDPA 76 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~-----~~ld~a 76 (110)
+++++|+.|+.+.|+||||||+|.++..+..+.+. ...-+.|+..+ ..+.+.+||+||.. ...|+|
T Consensus 262 ~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~-----~~~~~~L~~~l----~~g~i~~IgaTt~~e~~~~~~~d~a 332 (731)
T TIGR02639 262 RLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS-----MDASNLLKPAL----SSGKLRCIGSTTYEEYKNHFEKDRA 332 (731)
T ss_pred HHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc-----HHHHHHHHHHH----hCCCeEEEEecCHHHHHHHhhhhHH
Confidence 57889999988889999999999998765432211 11222233333 34678999999974 368999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
+.| ||. .|+++.|+.+++..|++.+.
T Consensus 333 l~r--Rf~-~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 333 LSR--RFQ-KIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHH--hCc-eEEeCCCCHHHHHHHHHHHH
Confidence 999 997 69999999999998888554
No 47
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.01 E-value=1.7e-09 Score=86.81 Aligned_cols=90 Identities=26% Similarity=0.347 Sum_probs=66.0
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc-----CC--------CCCCEEEEEecC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG-----MG--------AKKNVFIIGATN 68 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~--------~~~~v~vi~ttn 68 (110)
++.+.|..|....| ||||||+|.+.+...+ . ..+.|+..+|. +. ...++++|+|||
T Consensus 403 ~i~~~l~~~~~~~~-villDEidk~~~~~~~-------~---~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN 471 (775)
T TIGR00763 403 RIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-------D---PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATAN 471 (775)
T ss_pred hHHHHHHHhCcCCC-EEEEechhhcCCccCC-------C---HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecC
Confidence 35567888877666 7899999999743211 1 23345555542 11 125799999999
Q ss_pred CCCCCCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 69 RPDIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 69 ~~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
.++.+|+++++ ||+ .|+++.|+.+++..|++.++
T Consensus 472 ~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 472 SIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 99999999999 995 79999999999998876654
No 48
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.96 E-value=2.5e-09 Score=86.64 Aligned_cols=91 Identities=26% Similarity=0.348 Sum_probs=67.6
Q ss_pred cHHHHHHHHHh-cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC-----CCCc
Q psy13774 2 RIATGASMARA-AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD-----IIDP 75 (110)
Q Consensus 2 ~l~~~F~~A~~-~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~-----~ld~ 75 (110)
+|+.+|+.++. ..++|+||||+|.++..++..... ... +.|+..+ ..+.+.+||||+..+ .+|+
T Consensus 267 ~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~---n~Lkp~l----~~G~l~~IgaTT~~e~~~~~~~d~ 336 (852)
T TIGR03345 267 RLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG---DAA---NLLKPAL----ARGELRTIAATTWAEYKKYFEKDP 336 (852)
T ss_pred HHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc---cHH---HHhhHHh----hCCCeEEEEecCHHHHhhhhhccH
Confidence 57889998875 468999999999999776432211 111 2222222 456789999999754 4999
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 76 AILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 76 al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
||.| ||. .|.++.|+.+++..|++.+.
T Consensus 337 AL~r--Rf~-~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 337 ALTR--RFQ-VVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHH--hCe-EEEeCCCCHHHHHHHHHHHH
Confidence 9999 995 79999999999998876554
No 49
>CHL00181 cbbX CbbX; Provisional
Probab=98.96 E-value=5.6e-09 Score=75.28 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=64.2
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC-----CCCCccccCCCccceEE
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP-----DIIDPAILRPGRLDQLI 87 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~-----~~ld~al~r~grfd~~i 87 (110)
..++||||||+|.++..+.. +.........|+..|+.. ..+++||++++.. ..++|++.+ ||+..|
T Consensus 121 a~ggVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i 191 (287)
T CHL00181 121 AMGGVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHV 191 (287)
T ss_pred ccCCEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceE
Confidence 35689999999999754321 113466778888888763 4567777777532 145699999 999999
Q ss_pred EecCCCHHHHHHHHHHHhh
Q psy13774 88 YIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 88 ~~~~P~~~~R~~~~~~~~~ 106 (110)
+|+.++.+++..|++.+++
T Consensus 192 ~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 192 DFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred EcCCcCHHHHHHHHHHHHH
Confidence 9999999999988887765
No 50
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.93 E-value=5.4e-09 Score=75.20 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC--C---CCCcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP--D---IIDPAIL 78 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~--~---~ld~al~ 78 (110)
..+|+.| .+++|||||+|.+...+.. ..........|++.|+. ...++++|++++.. + .++|++.
T Consensus 114 ~~~~~~a---~~gvL~iDEi~~L~~~~~~-----~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~~~~~np~L~ 183 (284)
T TIGR02880 114 KEILKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDSFFESNPGFS 183 (284)
T ss_pred HHHHHHc---cCcEEEEechhhhccCCCc-----cchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhhCHHHH
Confidence 3455554 4689999999998654321 11345677788888876 34677788876642 3 3589999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
+ ||+..|+||.++.+++..|++.++++
T Consensus 184 s--R~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 184 S--RVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred h--hCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 9 99999999999999999988887754
No 51
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.91 E-value=3.2e-09 Score=86.08 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=67.7
Q ss_pred cHHHHHHHHH-hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC-----CCCc
Q psy13774 2 RIATGASMAR-AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD-----IIDP 75 (110)
Q Consensus 2 ~l~~~F~~A~-~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~-----~ld~ 75 (110)
+++.+|..+. ...|+|+||||+|.++..+++.+.. ....++ ...+ ..+.+.+||+|+..+ .+|+
T Consensus 258 ~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~---d~~~~l---kp~l----~~g~l~~IgaTt~~e~r~~~~~d~ 327 (857)
T PRK10865 258 RLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNML---KPAL----ARGELHCVGATTLDEYRQYIEKDA 327 (857)
T ss_pred HHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccch---hHHHHh---cchh----hcCCCeEEEcCCCHHHHHHhhhcH
Confidence 4777888754 4578999999999998766432211 122222 2222 457889999999987 4899
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 76 AILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 76 al~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
|+.| ||+ .|.++.|+.+++..+++.+..
T Consensus 328 al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 328 ALER--RFQ-KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred HHHh--hCC-EEEeCCCCHHHHHHHHHHHhh
Confidence 9999 997 589999999999988876653
No 52
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.90 E-value=1.3e-08 Score=72.25 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC-----CCCCccc
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP-----DIIDPAI 77 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~-----~~ld~al 77 (110)
++.+|+.| .++||||||+|.|..... .......+..++..|+.. ..++++|+++... ..++|++
T Consensus 97 ~~~~~~~a---~~~VL~IDE~~~L~~~~~------~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~~~~~~~p~L 165 (261)
T TIGR02881 97 TREVIKKA---LGGVLFIDEAYSLARGGE------KDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEMDYFLSLNPGL 165 (261)
T ss_pred HHHHHHhc---cCCEEEEechhhhccCCc------cchHHHHHHHHHHHHhcc--CCCEEEEecCCcchhHHHHhcChHH
Confidence 34556555 468999999999963111 112355677888888774 3455666554332 2478999
Q ss_pred cCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 78 LRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 78 ~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
.+ ||+..|+++.++.+++..|++.+.+
T Consensus 166 ~s--Rf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 166 RS--RFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred Hh--ccceEEEECCCCHHHHHHHHHHHHH
Confidence 99 9999999999999999988887664
No 53
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.77 E-value=1.9e-08 Score=81.57 Aligned_cols=91 Identities=21% Similarity=0.230 Sum_probs=66.3
Q ss_pred cHHHHHHHHHhc-CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC-----CCCc
Q psy13774 2 RIATGASMARAA-APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD-----IIDP 75 (110)
Q Consensus 2 ~l~~~F~~A~~~-~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~-----~ld~ 75 (110)
+++.+|+.+... .|+||||||+|.++..++..+. ....+.|...+ ....+.+||+|+..+ .+|+
T Consensus 253 ~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~------~d~~~~Lk~~l----~~g~i~~IgaTt~~e~r~~~~~d~ 322 (852)
T TIGR03346 253 RLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA------MDAGNMLKPAL----ARGELHCIGATTLDEYRKYIEKDA 322 (852)
T ss_pred HHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch------hHHHHHhchhh----hcCceEEEEeCcHHHHHHHhhcCH
Confidence 567888888654 5999999999999865532211 11222222222 456789999999874 5899
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 76 AILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 76 al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
++.| ||. .|.++.|+.+++..+++.+.
T Consensus 323 al~r--Rf~-~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 323 ALER--RFQ-PVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHh--cCC-EEEeCCCCHHHHHHHHHHHH
Confidence 9999 996 58999999999998887654
No 54
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.67 E-value=6.9e-08 Score=78.11 Aligned_cols=90 Identities=21% Similarity=0.218 Sum_probs=66.5
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC-----CCCcc
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD-----IIDPA 76 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~-----~ld~a 76 (110)
+|+.+|+.++...|+|+||||+|.++..++..+.. ....++ ...+ ..+.+.+||+|+..+ ..|++
T Consensus 259 rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~---~~a~lL---kp~l----~rg~l~~IgaTt~~ey~~~ie~D~a 328 (821)
T CHL00095 259 RLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI---DAANIL---KPAL----ARGELQCIGATTLDEYRKHIEKDPA 328 (821)
T ss_pred HHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc---cHHHHh---HHHH----hCCCcEEEEeCCHHHHHHHHhcCHH
Confidence 57889999988889999999999998765432211 122222 2222 356788999999774 58999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHH
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFL 104 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~ 104 (110)
+.+ ||. .|.++.|+.++...+++.+
T Consensus 329 L~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 329 LER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 999 996 5899999999987777654
No 55
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=1.1e-06 Score=65.97 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=59.6
Q ss_pred HHHHHHHHHhc----CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCcccc
Q psy13774 3 IATGASMARAA----APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 3 l~~~F~~A~~~----~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~ 78 (110)
++++++.+... ...|++|||+|.+.. ...+.|++.|+.. ..++++|.+|++++.+.|+++
T Consensus 102 iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~LEep--~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 102 VRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKAVEEP--PPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred HHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHHhhcC--CCCCeEEEEECChHHChHHHH
Confidence 56777776532 235999999998831 2336688888763 445666666666999999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHH
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDK 102 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~ 102 (110)
+ |+ ..++|++|+.++...++.
T Consensus 166 S--Rc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 166 S--RC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred h--hC-eEEECCCCCHHHHHHHHH
Confidence 9 88 689999999888766654
No 56
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.36 E-value=1.7e-06 Score=63.27 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=39.3
Q ss_pred CEEEEEecCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 60 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 60 ~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
++.+|++||.+..+++++++ ||...+.+++|+.+++..+++...
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~ 193 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSA 193 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHH
Confidence 57899999999999999999 999999999999999988777543
No 57
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.36 E-value=2.2e-06 Score=61.68 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=56.1
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC----------------CCCCEEEEEecCCCCCCCcc
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG----------------AKKNVFIIGATNRPDIIDPA 76 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~v~vi~ttn~~~~ld~a 76 (110)
..+.++||||+|.+.... ...|.+.+++.. ...++++|++||++..++++
T Consensus 80 ~~~~vl~iDEi~~l~~~~--------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~ 145 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSPAV--------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSP 145 (305)
T ss_pred ccCCEEEEehHhhhCHHH--------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHH
Confidence 357899999999884221 112333333211 12358899999999999999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
+++ ||...+.+++|+.++...+++...
T Consensus 146 l~s--R~~~~~~l~~l~~~e~~~il~~~~ 172 (305)
T TIGR00635 146 LRD--RFGIILRLEFYTVEELAEIVSRSA 172 (305)
T ss_pred HHh--hcceEEEeCCCCHHHHHHHHHHHH
Confidence 999 999999999999999887776544
No 58
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.27 E-value=7.2e-06 Score=60.25 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=61.4
Q ss_pred HHHHHHH-hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-CCCCCEEEEEecCCCC---CCCccccC
Q psy13774 5 TGASMAR-AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-GAKKNVFIIGATNRPD---IIDPAILR 79 (110)
Q Consensus 5 ~~F~~A~-~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-~~~~~v~vi~ttn~~~---~ld~al~r 79 (110)
.+++... ...|.||+|||+|.+.... ..++..++...+.. ....++.+|++||.++ .+++.+.+
T Consensus 119 ~l~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s 187 (365)
T TIGR02928 119 RLYKELNERGDSLIIVLDEIDYLVGDD-----------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS 187 (365)
T ss_pred HHHHHHHhcCCeEEEEECchhhhccCC-----------cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc
Confidence 3444443 3457899999999997110 12445555442211 1236799999999886 68888887
Q ss_pred CCccc-eEEEecCCCHHHHHHHHHHHhh
Q psy13774 80 PGRLD-QLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 80 ~grfd-~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
||. ..|++++++.++...+++..++
T Consensus 188 --~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 188 --SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred --cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 775 6799999999999988876654
No 59
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.21 E-value=6.1e-06 Score=59.63 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=53.1
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
.+.+|+|||+|.+.. ......+...++.. ..++.+|++||.+..+++++++ ||. .+.++.|+
T Consensus 100 ~~~vliiDe~d~l~~-------------~~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~ 161 (316)
T PHA02544 100 GGKVIIIDEFDRLGL-------------ADAQRHLRSFMEAY--SKNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPT 161 (316)
T ss_pred CCeEEEEECcccccC-------------HHHHHHHHHHHHhc--CCCceEEEEcCChhhchHHHHh--hce-EEEeCCCC
Confidence 578999999997621 11222344445553 3466788899999999999999 984 78999999
Q ss_pred HHHHHHHHHHH
Q psy13774 94 EIWLILSDKFL 104 (110)
Q Consensus 94 ~~~R~~~~~~~ 104 (110)
.+++..+++.+
T Consensus 162 ~~~~~~il~~~ 172 (316)
T PHA02544 162 KEEQIEMMKQM 172 (316)
T ss_pred HHHHHHHHHHH
Confidence 99988665543
No 60
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.18 E-value=8.3e-06 Score=65.98 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc---------CC----CCCCEEEEEecCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG---------MG----AKKNVFIIGATNRPD 71 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~---------~~----~~~~v~vi~ttn~~~ 71 (110)
+.+..+....| ||+|||+|.+.....+ . ..+.|+..+|. +- .-.++++|+|+|..
T Consensus 408 ~~l~~~~~~~~-villDEidk~~~~~~g-------~---~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~- 475 (784)
T PRK10787 408 QKMAKVGVKNP-LFLLDEIDKMSSDMRG-------D---PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM- 475 (784)
T ss_pred HHHHhcCCCCC-EEEEEChhhcccccCC-------C---HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-
Confidence 34444444445 7899999988643211 1 23445555552 11 22689999999987
Q ss_pred CCCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 72 IIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 72 ~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
.|+|+++. |++ .|.+..++.++...|.+.++
T Consensus 476 ~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 476 NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhh
Confidence 59999999 995 68898888888877765554
No 61
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.17 E-value=1.6e-05 Score=53.54 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=54.2
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
...||+|||+|.+.. ...+.|+..++.. ....++|.+|+.+..+++++++ |+ ..+++.+|+
T Consensus 96 ~~kviiide~~~l~~--------------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~ 156 (188)
T TIGR00678 96 GRRVVIIEDAERMNE--------------AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLS 156 (188)
T ss_pred CeEEEEEechhhhCH--------------HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EEeeCCCCC
Confidence 356999999997732 2345688888773 4466677778888999999999 77 589999999
Q ss_pred HHHHHHHHHH
Q psy13774 94 EIWLILSDKF 103 (110)
Q Consensus 94 ~~~R~~~~~~ 103 (110)
.++...+++.
T Consensus 157 ~~~~~~~l~~ 166 (188)
T TIGR00678 157 EEALLQWLIR 166 (188)
T ss_pred HHHHHHHHHH
Confidence 9887776654
No 62
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=1.2e-05 Score=59.40 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=55.6
Q ss_pred EEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCHHH
Q psy13774 17 VLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEIW 96 (110)
Q Consensus 17 ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~~ 96 (110)
|++||++|.+ .....+.||+.+++ ...++++|.+|++++.|.|++++ |+ ..+.|++|+.++
T Consensus 135 V~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~ 195 (342)
T PRK06964 135 VVVLYPAEAL--------------NVAAANALLKTLEE--PPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEA 195 (342)
T ss_pred EEEEechhhc--------------CHHHHHHHHHHhcC--CCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHH
Confidence 6666666655 23456789999987 67899999999999999999999 98 789999999988
Q ss_pred HHHHHHH
Q psy13774 97 LILSDKF 103 (110)
Q Consensus 97 R~~~~~~ 103 (110)
...++..
T Consensus 196 ~~~~L~~ 202 (342)
T PRK06964 196 AAAWLAA 202 (342)
T ss_pred HHHHHHH
Confidence 8776653
No 63
>PRK06893 DNA replication initiation factor; Validated
Probab=98.09 E-value=9.1e-06 Score=56.71 Aligned_cols=80 Identities=10% Similarity=0.145 Sum_probs=53.5
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCC-CEEEEEecCCCCCCC---ccccCCCccceEEEe
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKK-NVFIIGATNRPDIID---PAILRPGRLDQLIYI 89 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~-~v~vi~ttn~~~~ld---~al~r~grfd~~i~~ 89 (110)
++.+|+|||++.+..+. .... .+...++.....+ .+++++++..|..++ |++.+..++...+.+
T Consensus 91 ~~dlLilDDi~~~~~~~---------~~~~---~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l 158 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNE---------EWEL---AIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQL 158 (229)
T ss_pred cCCEEEEeChhhhcCCh---------HHHH---HHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeC
Confidence 45799999999885322 1122 2444444443333 455666777777665 889984444679999
Q ss_pred cCCCHHHHHHHHHHHh
Q psy13774 90 PLPDEIWLILSDKFLY 105 (110)
Q Consensus 90 ~~P~~~~R~~~~~~~~ 105 (110)
+.||.++|..+++...
T Consensus 159 ~~pd~e~~~~iL~~~a 174 (229)
T PRK06893 159 NDLTDEQKIIVLQRNA 174 (229)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999998877544
No 64
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.03 E-value=9e-06 Score=60.98 Aligned_cols=79 Identities=11% Similarity=0.213 Sum_probs=54.4
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC---CCccccCCCccc--eEEE
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI---IDPAILRPGRLD--QLIY 88 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~---ld~al~r~grfd--~~i~ 88 (110)
.+.+|+|||+|.+..+. ....+|...++.+...++.++|+++..|.. +++.+.+ ||. ..++
T Consensus 199 ~~dlLiiDDi~~l~~~~------------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~ 264 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKE------------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVD 264 (405)
T ss_pred hCCEEEEehhhhhcCCH------------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEE
Confidence 36799999999885322 112234444444433445566766666654 5688998 996 4799
Q ss_pred ecCCCHHHHHHHHHHHhh
Q psy13774 89 IPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 89 ~~~P~~~~R~~~~~~~~~ 106 (110)
+++||.++|..|++...+
T Consensus 265 i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 265 IEPPDLETRLAILQKKAE 282 (405)
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 999999999988887654
No 65
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.03 E-value=4.3e-05 Score=56.74 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=57.9
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC---CCCccccCCCccc-eEEE
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD---IIDPAILRPGRLD-QLIY 88 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~---~ld~al~r~grfd-~~i~ 88 (110)
..+.||+|||+|.+. .+. ....+..++..++... ..++.+|+++|.++ .+++.+.+ ||. ..|+
T Consensus 137 ~~~~viviDE~d~l~-~~~---------~~~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~ 203 (394)
T PRK00411 137 DRVLIVALDDINYLF-EKE---------GNDVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIY 203 (394)
T ss_pred CCEEEEEECCHhHhh-ccC---------CchHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceee
Confidence 456899999999997 211 1235666666666542 34788899988764 57777776 664 5789
Q ss_pred ecCCCHHHHHHHHHHHhh
Q psy13774 89 IPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 89 ~~~P~~~~R~~~~~~~~~ 106 (110)
+++++.++...+++..++
T Consensus 204 f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 204 FPPYTADEIFDILKDRVE 221 (394)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 999999998888776554
No 66
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=4.6e-05 Score=58.60 Aligned_cols=72 Identities=22% Similarity=0.178 Sum_probs=54.8
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
...|++|||+|.+. ....+.||..++. ....+++|++|+.++.|.+++++ |+ ..+.|..++
T Consensus 121 ~~KV~IIDEah~Ls--------------~~A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls 181 (484)
T PRK14956 121 KYKVYIIDEVHMLT--------------DQSFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVP 181 (484)
T ss_pred CCEEEEEechhhcC--------------HHHHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCC
Confidence 45699999999882 2356778888876 45788999999999999999999 98 457887777
Q ss_pred HHHHHHHHHHH
Q psy13774 94 EIWLILSDKFL 104 (110)
Q Consensus 94 ~~~R~~~~~~~ 104 (110)
.++-..+++..
T Consensus 182 ~~~i~~~L~~i 192 (484)
T PRK14956 182 LSVLQDYSEKL 192 (484)
T ss_pred HHHHHHHHHHH
Confidence 66544444443
No 67
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=2.8e-05 Score=62.62 Aligned_cols=93 Identities=24% Similarity=0.263 Sum_probs=68.6
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC-----CCCcc
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD-----IIDPA 76 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~-----~ld~a 76 (110)
|++.+.+..++..+.|+||||++.+.+.....++ ......++.-.| ....+-+||+|..-+ .=|+|
T Consensus 250 Rlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPaL-------ARGeL~~IGATT~~EYRk~iEKD~A 320 (786)
T COG0542 250 RLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPAL-------ARGELRCIGATTLDEYRKYIEKDAA 320 (786)
T ss_pred HHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHHH-------hcCCeEEEEeccHHHHHHHhhhchH
Confidence 5777888888888999999999999977654332 113334444333 345667889888654 45899
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
|-| || ..|.+.-|+.++=..|++-+..
T Consensus 321 L~R--RF-Q~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 321 LER--RF-QKVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred HHh--cC-ceeeCCCCCHHHHHHHHHHHHH
Confidence 999 99 5699999999998888876543
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=1.8e-05 Score=62.81 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=57.3
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
..|++|||+|.|. ....+.||+.|+. ...++++|.+||.++.|.+.+++ |+ ..+.|..++.
T Consensus 125 ~KViIIDEah~Ls--------------~~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~ 185 (700)
T PRK12323 125 FKVYMIDEVHMLT--------------NHAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPP 185 (700)
T ss_pred ceEEEEEChHhcC--------------HHHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCCh
Confidence 4699999999882 2356778888876 45688999999999999999999 98 7799999988
Q ss_pred HHHHHHHHHH
Q psy13774 95 IWLILSDKFL 104 (110)
Q Consensus 95 ~~R~~~~~~~ 104 (110)
++-..+++..
T Consensus 186 eei~~~L~~I 195 (700)
T PRK12323 186 GHIVSHLDAI 195 (700)
T ss_pred HHHHHHHHHH
Confidence 8766655543
No 69
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=4.8e-05 Score=55.95 Aligned_cols=70 Identities=14% Similarity=0.247 Sum_probs=56.8
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
..-|++||++|.+. ....+.||+.+++ ...++++|.+|+.++.+.|++++ |+. .+.|++|+
T Consensus 106 ~~kv~iI~~a~~m~--------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~-~~~~~~~~ 166 (328)
T PRK05707 106 GRKVVLIEPAEAMN--------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ-QQACPLPS 166 (328)
T ss_pred CCeEEEECChhhCC--------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-eeeCCCcC
Confidence 34688999999772 3466788888887 45788999999999999999999 984 49999999
Q ss_pred HHHHHHHHH
Q psy13774 94 EIWLILSDK 102 (110)
Q Consensus 94 ~~~R~~~~~ 102 (110)
.++-..++.
T Consensus 167 ~~~~~~~L~ 175 (328)
T PRK05707 167 NEESLQWLQ 175 (328)
T ss_pred HHHHHHHHH
Confidence 887665554
No 70
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.94 E-value=1.3e-05 Score=60.99 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=55.6
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC---CCccccCCCccc--eEEE
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI---IDPAILRPGRLD--QLIY 88 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~---ld~al~r~grfd--~~i~ 88 (110)
.+.+|+|||+|.+..++. ...+|...++.+...++.++|+++..|.. +++.+.+ ||. ..++
T Consensus 211 ~~dlLiiDDi~~l~~~~~------------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~ 276 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKER------------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVD 276 (450)
T ss_pred cCCEEEEehhhhhcCCHH------------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEE
Confidence 578999999998843221 12244454554434445566766666655 7789998 996 5899
Q ss_pred ecCCCHHHHHHHHHHHhh
Q psy13774 89 IPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 89 ~~~P~~~~R~~~~~~~~~ 106 (110)
+.+|+.++|..+++...+
T Consensus 277 i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 277 IEPPDLETRIAILKKKAE 294 (450)
T ss_pred ecCCCHHHHHHHHHHHHH
Confidence 999999999998887654
No 71
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=9.3e-05 Score=56.92 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=55.3
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
..||+|||+|.+. ....+.|+..++.. ...+++|++|+.+..+++++++ |+ ..+.+.+|+.
T Consensus 118 ~kVvIIDE~h~Lt--------------~~a~~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~ 178 (472)
T PRK14962 118 YKVYIIDEVHMLT--------------KEAFNALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISD 178 (472)
T ss_pred eEEEEEEChHHhH--------------HHHHHHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccH
Confidence 4699999999883 12345677777763 4567888888888999999999 88 5799999999
Q ss_pred HHHHHHHHHHh
Q psy13774 95 IWLILSDKFLY 105 (110)
Q Consensus 95 ~~R~~~~~~~~ 105 (110)
++...+++...
T Consensus 179 ~el~~~L~~i~ 189 (472)
T PRK14962 179 ELIIKRLQEVA 189 (472)
T ss_pred HHHHHHHHHHH
Confidence 88776666544
No 72
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.92 E-value=5.2e-05 Score=55.49 Aligned_cols=85 Identities=21% Similarity=0.181 Sum_probs=61.3
Q ss_pred HHHHHHHHHhc----CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCcccc
Q psy13774 3 IATGASMARAA----APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 3 l~~~F~~A~~~----~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~ 78 (110)
++++++.+... ...||+|||+|.+. ....+.++..++. ....+++|.+|++++.+.++++
T Consensus 102 ~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~~~~~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~ 165 (355)
T TIGR02397 102 IREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KSAFNALLKTLEE--PPEHVVFILATTEPHKIPATIL 165 (355)
T ss_pred HHHHHHHHhcCcccCCceEEEEeChhhcC--------------HHHHHHHHHHHhC--CccceeEEEEeCCHHHHHHHHH
Confidence 44566655432 12599999999772 2245667777766 3456778888899999999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
+ |+ ..+++++|+.++...+++...+
T Consensus 166 s--r~-~~~~~~~~~~~~l~~~l~~~~~ 190 (355)
T TIGR02397 166 S--RC-QRFDFKRIPLEDIVERLKKILD 190 (355)
T ss_pred h--he-eEEEcCCCCHHHHHHHHHHHHH
Confidence 8 87 5789999999988877766443
No 73
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.89 E-value=7.8e-05 Score=56.98 Aligned_cols=70 Identities=29% Similarity=0.428 Sum_probs=47.8
Q ss_pred HHHHHHhc--CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhh--------------------cCCCCCCEEE
Q psy13774 6 GASMARAA--APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMD--------------------GMGAKKNVFI 63 (110)
Q Consensus 6 ~F~~A~~~--~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld--------------------~~~~~~~v~v 63 (110)
+...|+.. .|++++|||++.--.+ ++..++++.++ .+....++.+
T Consensus 262 ~~~~A~~~p~~~~vliIDEINRani~-------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~I 328 (459)
T PRK11331 262 FCQQAKEQPEKKYVFIIDEINRANLS-------------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYI 328 (459)
T ss_pred HHHHHHhcccCCcEEEEehhhccCHH-------------HhhhhhhhhccccccccccceeeeccccccccccCCCCeEE
Confidence 44566653 5899999999964322 23333333222 2344578999
Q ss_pred EEecCCCC----CCCccccCCCccceEEEecC
Q psy13774 64 IGATNRPD----IIDPAILRPGRLDQLIYIPL 91 (110)
Q Consensus 64 i~ttn~~~----~ld~al~r~grfd~~i~~~~ 91 (110)
|||+|..+ .+|.|++| ||.. |++.+
T Consensus 329 IgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 329 IGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred EEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 99999998 89999999 9954 66654
No 74
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.87 E-value=5.8e-05 Score=61.88 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=61.2
Q ss_pred HHHHHHHHH--hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCC---CCCCCccc
Q psy13774 3 IATGASMAR--AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR---PDIIDPAI 77 (110)
Q Consensus 3 l~~~F~~A~--~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~---~~~ld~al 77 (110)
+..+|.... ....+||+|||||.|..+. ..++-.|..+... ...++++||.+|. ++.++|.+
T Consensus 856 LerLF~~L~k~~r~v~IIILDEID~L~kK~-----------QDVLYnLFR~~~~--s~SKLiLIGISNdlDLperLdPRL 922 (1164)
T PTZ00112 856 LDRLFNQNKKDNRNVSILIIDEIDYLITKT-----------QKVLFTLFDWPTK--INSKLVLIAISNTMDLPERLIPRC 922 (1164)
T ss_pred HHHHHhhhhcccccceEEEeehHhhhCccH-----------HHHHHHHHHHhhc--cCCeEEEEEecCchhcchhhhhhh
Confidence 345565542 2335799999999996421 2344445544332 3468999999996 56788888
Q ss_pred cCCCccce-EEEecCCCHHHHHHHHHHHhh
Q psy13774 78 LRPGRLDQ-LIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 78 ~r~grfd~-~i~~~~P~~~~R~~~~~~~~~ 106 (110)
.+ ||.. .|.|++++.++...|++.-+.
T Consensus 923 RS--RLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 923 RS--RLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred hh--ccccccccCCCCCHHHHHHHHHHHHH
Confidence 88 7654 488899999999988876543
No 75
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00012 Score=54.47 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=56.0
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
..|++|||+|.+. ....+.|+..++. ....+.+|.+|+.++.+.+++++ |+ ..+++++|+.
T Consensus 120 ~kviIIDEa~~l~--------------~~a~naLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~ 180 (363)
T PRK14961 120 FKVYLIDEVHMLS--------------RHSFNALLKTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISE 180 (363)
T ss_pred ceEEEEEChhhcC--------------HHHHHHHHHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCH
Confidence 3599999999772 2244567877776 34567777788889999999998 87 6799999999
Q ss_pred HHHHHHHHHHhh
Q psy13774 95 IWLILSDKFLYK 106 (110)
Q Consensus 95 ~~R~~~~~~~~~ 106 (110)
++...+++...+
T Consensus 181 ~el~~~L~~~~~ 192 (363)
T PRK14961 181 EKIFNFLKYILI 192 (363)
T ss_pred HHHHHHHHHHHH
Confidence 998877766443
No 76
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=9.3e-05 Score=59.74 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=56.5
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
..|++|||+|.|. ....+.||+.|++ ...++.+|.+||++..|.+.+++ |+ ..+.|..++.
T Consensus 120 ~KVIIIDEah~LT--------------~~A~NALLKtLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~ 180 (830)
T PRK07003 120 FKVYMIDEVHMLT--------------NHAFNAMLKTLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPA 180 (830)
T ss_pred ceEEEEeChhhCC--------------HHHHHHHHHHHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCH
Confidence 4699999999882 2346678888876 35688999999999999999999 98 6788988887
Q ss_pred HHHHHHHHHHh
Q psy13774 95 IWLILSDKFLY 105 (110)
Q Consensus 95 ~~R~~~~~~~~ 105 (110)
++-..+++..+
T Consensus 181 eeIv~~L~~Il 191 (830)
T PRK07003 181 GHIVSHLERIL 191 (830)
T ss_pred HHHHHHHHHHH
Confidence 77665555443
No 77
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.85 E-value=7.8e-05 Score=58.05 Aligned_cols=43 Identities=21% Similarity=0.099 Sum_probs=35.6
Q ss_pred EEEEEecCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 61 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 61 v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
.++.+||+.|+.++|++++ |+. .|++++++.++...+++..++
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred EEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHH
Confidence 4566778899999999999 984 688988888888888887664
No 78
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.83 E-value=0.00012 Score=45.83 Aligned_cols=67 Identities=43% Similarity=0.661 Sum_probs=46.7
Q ss_pred HHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC----CCCEEEEEecCCCC--CCCccccCCC
Q psy13774 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA----KKNVFIIGATNRPD--IIDPAILRPG 81 (110)
Q Consensus 8 ~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~----~~~v~vi~ttn~~~--~ld~al~r~g 81 (110)
..+....+.+|++||++.+. ......++..+..... ..++.+|++||... .+++.+..
T Consensus 78 ~~~~~~~~~~lilDe~~~~~--------------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~-- 141 (151)
T cd00009 78 ELAEKAKPGVLFIDEIDSLS--------------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD-- 141 (151)
T ss_pred HhhccCCCeEEEEeChhhhh--------------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--
Confidence 44555678999999999771 1122344444444432 46788899999887 78888888
Q ss_pred ccceEEEec
Q psy13774 82 RLDQLIYIP 90 (110)
Q Consensus 82 rfd~~i~~~ 90 (110)
||+..++++
T Consensus 142 r~~~~i~~~ 150 (151)
T cd00009 142 RLDIRIVIP 150 (151)
T ss_pred hhccEeecC
Confidence 999888876
No 79
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.83 E-value=0.00015 Score=54.69 Aligned_cols=83 Identities=23% Similarity=0.279 Sum_probs=56.2
Q ss_pred HHHHHHHHHh----cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecC-C-CCCCCcc
Q psy13774 3 IATGASMARA----AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN-R-PDIIDPA 76 (110)
Q Consensus 3 l~~~F~~A~~----~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn-~-~~~ld~a 76 (110)
++.+++.+.. ....+|||||+|.+.. .....|+..++ ...+++|++|+ . ...++++
T Consensus 77 ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le----~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 77 LREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVE----DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhh----cCcEEEEEeCCCChhhhccHH
Confidence 4556666542 2568999999997731 12234555554 24567776653 3 4589999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
+++ |+ ..+.+++|+.++...+++..+.
T Consensus 139 L~S--R~-~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 139 LLS--RA-QVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred Hhc--cc-eeeEeCCCCHHHHHHHHHHHHH
Confidence 999 98 7899999999888777766543
No 80
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=4.1e-05 Score=58.32 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=54.1
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC---CCccccCCCccc--eEE
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI---IDPAILRPGRLD--QLI 87 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~---ld~al~r~grfd--~~i 87 (110)
..|.+|+|||++.+..+.. .-.++...++.+....+.+++++.+.|.. +++.+.+ ||. ..+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~------------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v 258 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTG------------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVA 258 (440)
T ss_pred hcCCEEEEechhhhcCcHH------------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceE
Confidence 3689999999998753221 11234444444434445566666677765 5577888 884 578
Q ss_pred EecCCCHHHHHHHHHHHhh
Q psy13774 88 YIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 88 ~~~~P~~~~R~~~~~~~~~ 106 (110)
.+.+||.+.|..|++...+
T Consensus 259 ~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 259 KLEPPDEETRKKIARKMLE 277 (440)
T ss_pred eeCCCCHHHHHHHHHHHHH
Confidence 8999999999998877654
No 81
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00021 Score=56.05 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=60.6
Q ss_pred HHHHHHHHHh----cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCcccc
Q psy13774 3 IATGASMARA----AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 3 l~~~F~~A~~----~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~ 78 (110)
++++...+.. ...-|++|||+|.+. ....+.|+..++. ....+++|.+|+.++.++++++
T Consensus 104 ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 104 IRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFNALLKTLEE--PPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred HHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHH
Confidence 4455555442 224599999999772 2356678888876 3557778888888999999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
+ |+. .+.|..|+.++-..+++...
T Consensus 168 S--Rc~-~~~f~~~~~~ei~~~L~~i~ 191 (559)
T PRK05563 168 S--RCQ-RFDFKRISVEDIVERLKYIL 191 (559)
T ss_pred h--Hhe-EEecCCCCHHHHHHHHHHHH
Confidence 8 884 68899999887766666544
No 82
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00018 Score=53.36 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=55.3
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
..-||+|||+|.+- ....+.||+.++. ...+.++|..|+.++.+.|.+++ |+ ..+.+++|+
T Consensus 141 ~~rVviIDeAd~l~--------------~~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~ 201 (351)
T PRK09112 141 NWRIVIIDPADDMN--------------RNAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLD 201 (351)
T ss_pred CceEEEEEchhhcC--------------HHHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCC
Confidence 45699999999882 2344568888877 34566777778889999999999 88 689999999
Q ss_pred HHHHHHHHHH
Q psy13774 94 EIWLILSDKF 103 (110)
Q Consensus 94 ~~~R~~~~~~ 103 (110)
.++=..+++.
T Consensus 202 ~~~~~~~L~~ 211 (351)
T PRK09112 202 DDELKKALSH 211 (351)
T ss_pred HHHHHHHHHH
Confidence 8887766654
No 83
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00028 Score=54.77 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=62.4
Q ss_pred HHHHHHHHHhc----CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCcccc
Q psy13774 3 IATGASMARAA----APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 3 l~~~F~~A~~~----~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~ 78 (110)
++.+.+.|... ...|++|||+|.+. ....+.|+..++. ....+++|.+|+.++.++++++
T Consensus 113 Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 113 IRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KGAFNALLKTLEE--PPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred HHHHHHHHHhccccCCcEEEEEEChhhcC--------------HHHHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHH
Confidence 45555555422 24599999999772 2345677777775 4567788888899999999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
+ |+ ..+++..++.++...+++...+
T Consensus 177 S--Rc-~~~ef~~ls~~el~~~L~~i~~ 201 (507)
T PRK06645 177 S--RC-QRYDLRRLSFEEIFKLLEYITK 201 (507)
T ss_pred h--cc-eEEEccCCCHHHHHHHHHHHHH
Confidence 8 87 5799999999888777665543
No 84
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00024 Score=52.18 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=55.4
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCHH
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
-|++||++|.+. ....+.||+.+++ ...++++|.+|+.++.|-|.+++ |+ ..+.|++|+.+
T Consensus 115 kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~ 175 (319)
T PRK08769 115 QVVIVDPADAIN--------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAH 175 (319)
T ss_pred EEEEeccHhhhC--------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHH
Confidence 599999999882 3456788888887 45688899999999999999999 98 56889999887
Q ss_pred HHHHHHH
Q psy13774 96 WLILSDK 102 (110)
Q Consensus 96 ~R~~~~~ 102 (110)
+-..++.
T Consensus 176 ~~~~~L~ 182 (319)
T PRK08769 176 EALAWLL 182 (319)
T ss_pred HHHHHHH
Confidence 6655554
No 85
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00018 Score=57.43 Aligned_cols=93 Identities=25% Similarity=0.291 Sum_probs=61.9
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHH------HhhhcC----CCCCCEEEEEecCCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQIL------TEMDGM----GAKKNVFIIGATNRPD 71 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll------~~ld~~----~~~~~v~vi~ttn~~~ 71 (110)
||=+..+.|....| ++++||||.+..+-.+ ...+.+-+.| +..|.+ ..-.+|++|+|+|..+
T Consensus 406 rIiQ~mkka~~~NP-v~LLDEIDKm~ss~rG-------DPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~ 477 (782)
T COG0466 406 KIIQGMKKAGVKNP-VFLLDEIDKMGSSFRG-------DPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD 477 (782)
T ss_pred HHHHHHHHhCCcCC-eEEeechhhccCCCCC-------ChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc
Confidence 34566778888888 7778999999654322 1222222222 112222 1235899999999999
Q ss_pred CCCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 72 IIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 72 ~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
.||..|+. |. ..|.++==.+++...|.+-++
T Consensus 478 tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 478 TIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 99999998 88 458887777777777755544
No 86
>PRK04132 replication factor C small subunit; Provisional
Probab=97.72 E-value=0.00036 Score=57.03 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=54.3
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCHH
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
.||+|||+|.+. ....+.|+..|+.. ..++.+|++||.+..+.+++++ |+ ..+.|++|+.+
T Consensus 632 KVvIIDEaD~Lt--------------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~ 692 (846)
T PRK04132 632 KIIFLDEADALT--------------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDE 692 (846)
T ss_pred EEEEEECcccCC--------------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHH
Confidence 599999999883 22455678888763 4678899999999999999999 87 67999999877
Q ss_pred HHHHHHHHH
Q psy13774 96 WLILSDKFL 104 (110)
Q Consensus 96 ~R~~~~~~~ 104 (110)
+-...++..
T Consensus 693 ~i~~~L~~I 701 (846)
T PRK04132 693 DIAKRLRYI 701 (846)
T ss_pred HHHHHHHHH
Confidence 655444433
No 87
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.0002 Score=58.40 Aligned_cols=74 Identities=16% Similarity=0.092 Sum_probs=56.5
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 92 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P 92 (110)
....|++|||+|.|. ....+.||+.|+.. ...+++|++|+.++.|-++|++ |+ ..+.|..+
T Consensus 119 ~~~KV~IIDEad~lt--------------~~a~NaLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l 179 (824)
T PRK07764 119 SRYKIFIIDEAHMVT--------------PQGFNALLKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLV 179 (824)
T ss_pred CCceEEEEechhhcC--------------HHHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCC
Confidence 345699999999883 23566788888873 5677888888999999999999 87 67899888
Q ss_pred CHHHHHHHHHHHh
Q psy13774 93 DEIWLILSDKFLY 105 (110)
Q Consensus 93 ~~~~R~~~~~~~~ 105 (110)
+.++-..+++..+
T Consensus 180 ~~~~l~~~L~~il 192 (824)
T PRK07764 180 PPEVMRGYLERIC 192 (824)
T ss_pred CHHHHHHHHHHHH
Confidence 8777665555443
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.0003 Score=56.02 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=57.5
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
.-|++|||+|.|. ....+.||+.|.. ....+.+|.+|+.+..|.+.+++ |+ ..++|..++.
T Consensus 120 ~KV~IIDEah~Ls--------------~~a~NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~ 180 (647)
T PRK07994 120 FKVYLIDEVHMLS--------------RHSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDV 180 (647)
T ss_pred CEEEEEechHhCC--------------HHHHHHHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCH
Confidence 4599999999772 3456788888887 45678888889999999999999 96 7899999988
Q ss_pred HHHHHHHHHHh
Q psy13774 95 IWLILSDKFLY 105 (110)
Q Consensus 95 ~~R~~~~~~~~ 105 (110)
++-..+++..+
T Consensus 181 ~ei~~~L~~il 191 (647)
T PRK07994 181 EQIRQQLEHIL 191 (647)
T ss_pred HHHHHHHHHHH
Confidence 87665555443
No 89
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00013 Score=53.88 Aligned_cols=70 Identities=17% Similarity=0.295 Sum_probs=57.9
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
.--|++||++|.+. ....+.||+.+++ ...++++|..|++++.|.|.+++ |.- .+.+++|+
T Consensus 108 ~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~ 168 (334)
T PRK07993 108 GAKVVWLPDAALLT--------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LHYLAPPP 168 (334)
T ss_pred CceEEEEcchHhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cccCCCCC
Confidence 34599999999772 3466789999988 67799999999999999999999 985 58999999
Q ss_pred HHHHHHHHH
Q psy13774 94 EIWLILSDK 102 (110)
Q Consensus 94 ~~~R~~~~~ 102 (110)
.++-..++.
T Consensus 169 ~~~~~~~L~ 177 (334)
T PRK07993 169 EQYALTWLS 177 (334)
T ss_pred HHHHHHHHH
Confidence 887766654
No 90
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.0002 Score=52.74 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=56.5
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
--|++||++|.+. ....+.||+.+++ ...++++|.+|+.++.|.|++++ |. ..+.+++|+.
T Consensus 108 ~KV~iI~~a~~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~ 168 (325)
T PRK06871 108 NKVVYIQGAERLT--------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEE 168 (325)
T ss_pred ceEEEEechhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCH
Confidence 3599999999772 3456788999988 67789999999999999999999 87 5688999988
Q ss_pred HHHHHHHH
Q psy13774 95 IWLILSDK 102 (110)
Q Consensus 95 ~~R~~~~~ 102 (110)
++-..++.
T Consensus 169 ~~~~~~L~ 176 (325)
T PRK06871 169 QQALDWLQ 176 (325)
T ss_pred HHHHHHHH
Confidence 77665554
No 91
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.00023 Score=52.28 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=57.4
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
--|++||++|.+. ...-+.||+.+++ ...++++|..|++++.+-|.+++ |. ..+.+++|+.
T Consensus 109 ~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~ 169 (319)
T PRK06090 109 YRLFVIEPADAMN--------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPST 169 (319)
T ss_pred ceEEEecchhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCH
Confidence 3699999999772 3456789999988 56789999999999999999999 98 5789999998
Q ss_pred HHHHHHHH
Q psy13774 95 IWLILSDK 102 (110)
Q Consensus 95 ~~R~~~~~ 102 (110)
++-..++.
T Consensus 170 ~~~~~~L~ 177 (319)
T PRK06090 170 AQAMQWLK 177 (319)
T ss_pred HHHHHHHH
Confidence 88766654
No 92
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.67 E-value=0.00041 Score=52.55 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=57.2
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC-----------CCCCEEEEEecCCCC---------
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-----------AKKNVFIIGATNRPD--------- 71 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~ttn~~~--------- 71 (110)
...++||||||+|.+..++.+.....+.....+.+.||..|++-. .....++|.|+|-..
T Consensus 171 ~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~ 250 (412)
T PRK05342 171 KAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGL 250 (412)
T ss_pred HcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCc
Confidence 347899999999999877433222222223457778888887521 012345555555410
Q ss_pred -------------------------------------------CCCccccCCCccceEEEecCCCHHHHHHHHH
Q psy13774 72 -------------------------------------------IIDPAILRPGRLDQLIYIPLPDEIWLILSDK 102 (110)
Q Consensus 72 -------------------------------------------~ld~al~r~grfd~~i~~~~P~~~~R~~~~~ 102 (110)
.+.|+++- |+|..+.|.+.+.+....|+.
T Consensus 251 ~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 251 EKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLEELDEEALVRILT 322 (412)
T ss_pred HHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHHHHH
Confidence 03455554 999999999999999887765
No 93
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00023 Score=53.13 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=56.6
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecC
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 91 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~ 91 (110)
...|-||+|||+|.+- ....+.|++.+.. ...+.++|.+|+.++.+.|.+++ |+ ..+.+++
T Consensus 139 ~~~~kVviIDead~m~--------------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~ 199 (365)
T PRK07471 139 EGGWRVVIVDTADEMN--------------ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRP 199 (365)
T ss_pred cCCCEEEEEechHhcC--------------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCC
Confidence 3567899999999772 3455678888876 34567888899999999999998 87 6799999
Q ss_pred CCHHHHHHHHHH
Q psy13774 92 PDEIWLILSDKF 103 (110)
Q Consensus 92 P~~~~R~~~~~~ 103 (110)
|+.++=..++..
T Consensus 200 l~~~~i~~~L~~ 211 (365)
T PRK07471 200 LAPEDVIDALAA 211 (365)
T ss_pred CCHHHHHHHHHH
Confidence 988876665543
No 94
>PRK08727 hypothetical protein; Validated
Probab=97.64 E-value=0.00021 Score=50.04 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=49.8
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC---CccccCCCcc--ceEEE
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII---DPAILRPGRL--DQLIY 88 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l---d~al~r~grf--d~~i~ 88 (110)
+..+|+|||+|.+..+. .... .+...++.......-+++.+...|..+ ++++++ || ...+.
T Consensus 93 ~~dlLiIDDi~~l~~~~---------~~~~---~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~ 158 (233)
T PRK08727 93 GRSLVALDGLESIAGQR---------EDEV---ALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIG 158 (233)
T ss_pred cCCEEEEeCcccccCCh---------HHHH---HHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEE
Confidence 45699999999775322 1112 233334433233333455555566655 799999 87 56789
Q ss_pred ecCCCHHHHHHHHHHH
Q psy13774 89 IPLPDEIWLILSDKFL 104 (110)
Q Consensus 89 ~~~P~~~~R~~~~~~~ 104 (110)
+++|+.++|..+++..
T Consensus 159 l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 159 LPVLDDVARAAVLRER 174 (233)
T ss_pred ecCCCHHHHHHHHHHH
Confidence 9999999999888763
No 95
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00033 Score=56.73 Aligned_cols=80 Identities=24% Similarity=0.292 Sum_probs=57.3
Q ss_pred HHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC--C-------CCCCEEEEEecCCC----------
Q psy13774 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM--G-------AKKNVFIIGATNRP---------- 70 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~--~-------~~~~v~vi~ttn~~---------- 70 (110)
.+.+..|||||||+|.+. ..+.+.|++.|++- . .-.++++|+|||.-
T Consensus 553 v~~~p~sVlllDEieka~--------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g 618 (758)
T PRK11034 553 VIKHPHAVLLLDEIEKAH--------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIG 618 (758)
T ss_pred HHhCCCcEEEeccHhhhh--------------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccC
Confidence 344556999999999773 23566777777631 1 11478899999932
Q ss_pred ---------------CCCCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 71 ---------------DIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 71 ---------------~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
..+.|.++. |+|..|.|++.+.+.-..|....+
T Consensus 619 ~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 619 LIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred cccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence 235677887 999999999999988776665544
No 96
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.63 E-value=0.0003 Score=51.47 Aligned_cols=70 Identities=23% Similarity=0.331 Sum_probs=50.5
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc----------CCCCCCEEEEEecC-----CCCCCCccccCC
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG----------MGAKKNVFIIGATN-----RPDIIDPAILRP 80 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~----------~~~~~~v~vi~ttn-----~~~~ld~al~r~ 80 (110)
+|+|+|||+.. ...+.+.|+..|++ +.-..+.++++|+| ....+++|+++
T Consensus 114 ~ill~DEInra--------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld- 178 (329)
T COG0714 114 VILLLDEINRA--------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD- 178 (329)
T ss_pred eEEEEeccccC--------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh-
Confidence 59999999943 13344556666654 22346789999999 66788999999
Q ss_pred CccceEEEecCCC-HHHHHHHH
Q psy13774 81 GRLDQLIYIPLPD-EIWLILSD 101 (110)
Q Consensus 81 grfd~~i~~~~P~-~~~R~~~~ 101 (110)
||-..++++.|+ ..+...+.
T Consensus 179 -Rf~~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 179 -RFLLRIYVDYPDSEEEERIIL 199 (329)
T ss_pred -hEEEEEecCCCCchHHHHHHH
Confidence 999999999994 44444443
No 97
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.62 E-value=0.00032 Score=43.30 Aligned_cols=81 Identities=26% Similarity=0.330 Sum_probs=49.8
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCC-CCCCCccccCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR-PDIIDPAILRP 80 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~-~~~ld~al~r~ 80 (110)
.++..++.|+...|.+|+|||++.+......... ................+..+|+++|. ....+..+..
T Consensus 66 ~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~- 136 (148)
T smart00382 66 RLRLALALARKLKPDVLILDEITSLLDAEQEALL--------LLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR- 136 (148)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH--------HhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-
Confidence 3567788898888999999999988644321100 00000001111223456788888887 4555555666
Q ss_pred CccceEEEecCC
Q psy13774 81 GRLDQLIYIPLP 92 (110)
Q Consensus 81 grfd~~i~~~~P 92 (110)
|++.++.+..+
T Consensus 137 -~~~~~~~~~~~ 147 (148)
T smart00382 137 -RFDRRIVLLLI 147 (148)
T ss_pred -ccceEEEecCC
Confidence 99999988765
No 98
>KOG2004|consensus
Probab=97.61 E-value=0.00031 Score=56.32 Aligned_cols=92 Identities=18% Similarity=0.257 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHH------HhhhcC----CCCCCEEEEEecCCCCC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQIL------TEMDGM----GAKKNVFIIGATNRPDI 72 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll------~~ld~~----~~~~~v~vi~ttn~~~~ 72 (110)
|=++.+..+-+.| +++|||+|.+...- ++ ...+.+-++| +.+|.+ -.-.+|++|+|.|..+.
T Consensus 495 iIq~LK~v~t~NP-liLiDEvDKlG~g~---qG----DPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idt 566 (906)
T KOG2004|consen 495 IIQCLKKVKTENP-LILIDEVDKLGSGH---QG----DPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDT 566 (906)
T ss_pred HHHHHHhhCCCCc-eEEeehhhhhCCCC---CC----ChHHHHHHhcChhhccchhhhccccccchhheEEEEecccccc
Confidence 3445555656666 88899999997211 11 1222222222 122222 12358999999999999
Q ss_pred CCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 73 IDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 73 ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
|++.|+. |. ..|+++=-..++...|.+-|+
T Consensus 567 IP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 567 IPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred CChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 9999998 87 346665555556666655443
No 99
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.60 E-value=0.00047 Score=55.57 Aligned_cols=83 Identities=25% Similarity=0.323 Sum_probs=59.0
Q ss_pred HHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC---------CCCCEEEEEecCCCC-------
Q psy13774 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG---------AKKNVFIIGATNRPD------- 71 (110)
Q Consensus 8 ~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~ttn~~~------- 71 (110)
+..+.+..+||+|||+|.+. ..+.+.|++.+++-. .-.++++|+|||...
T Consensus 547 ~~~~~~p~~VvllDEieka~--------------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~ 612 (731)
T TIGR02639 547 EAVRKHPHCVLLLDEIEKAH--------------PDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPP 612 (731)
T ss_pred HHHHhCCCeEEEEechhhcC--------------HHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhcc
Confidence 34455666999999999662 235566777776421 124688999998742
Q ss_pred ------------------CCCccccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 72 ------------------IIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 72 ------------------~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
.+.|.++. |+|..|.|.+.+.++...|++..++
T Consensus 613 ~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 613 IGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred CCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 25677776 9999999999999998877666543
No 100
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.58 E-value=0.00017 Score=50.14 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=50.9
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC---CCccccCCCccce--EEE
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI---IDPAILRPGRLDQ--LIY 88 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~---ld~al~r~grfd~--~i~ 88 (110)
+..+++|||+|.+..+ ......+...++.+...++.+|+.+...|.. +++.+.+ ||.. .+.
T Consensus 97 ~~DlL~iDDi~~l~~~------------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~ 162 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGK------------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVE 162 (219)
T ss_dssp TSSEEEEETGGGGTTH------------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEE
T ss_pred cCCEEEEecchhhcCc------------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhh
Confidence 4579999999988422 2233455555666555666677777677764 5678888 8854 899
Q ss_pred ecCCCHHHHHHHHHHHhh
Q psy13774 89 IPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 89 ~~~P~~~~R~~~~~~~~~ 106 (110)
+..|+.+.|..+++...+
T Consensus 163 l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 163 LQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp E----HHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 999999999988776553
No 101
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00078 Score=49.87 Aligned_cols=70 Identities=19% Similarity=0.138 Sum_probs=51.0
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
+.||+|||+|.+.. ...+.|+..++. .....++|.+|+.+..+.+++.+ |+ ..++++.|+.
T Consensus 109 ~kiviIDE~~~l~~--------------~~~~~ll~~le~--~~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~ 169 (367)
T PRK14970 109 YKIYIIDEVHMLSS--------------AAFNAFLKTLEE--PPAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITI 169 (367)
T ss_pred cEEEEEeChhhcCH--------------HHHHHHHHHHhC--CCCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccH
Confidence 46999999996631 235667777765 23456677778888999999998 76 4689999998
Q ss_pred HHHHHHHHH
Q psy13774 95 IWLILSDKF 103 (110)
Q Consensus 95 ~~R~~~~~~ 103 (110)
++...++..
T Consensus 170 ~~l~~~l~~ 178 (367)
T PRK14970 170 KDIKEHLAG 178 (367)
T ss_pred HHHHHHHHH
Confidence 887665544
No 102
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.58 E-value=0.00031 Score=53.21 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=58.4
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC-----------CCCEEEEEecCCC----------
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA-----------KKNVFIIGATNRP---------- 70 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~-----------~~~v~vi~ttn~~---------- 70 (110)
...|+||||||+|.+.+++++...........+.+.||+.|++... ..+.++|.|+|-.
T Consensus 179 ~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~ 258 (413)
T TIGR00382 179 KAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGL 258 (413)
T ss_pred hcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccCh
Confidence 3467899999999998865433222111223566677777765321 2356777777751
Q ss_pred -----------------C-----------------------CCCccccCCCccceEEEecCCCHHHHHHHHHH
Q psy13774 71 -----------------D-----------------------IIDPAILRPGRLDQLIYIPLPDEIWLILSDKF 103 (110)
Q Consensus 71 -----------------~-----------------------~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~ 103 (110)
+ .+.|+++- |+|..+.+.+.+.+....|+..
T Consensus 259 ~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 259 EKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTK 329 (413)
T ss_pred HHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHH
Confidence 0 13466665 9999999999999988776654
No 103
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.56 E-value=0.00061 Score=54.86 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=60.9
Q ss_pred HHHHHHHHHh----cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCcccc
Q psy13774 3 IATGASMARA----AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 3 l~~~F~~A~~----~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~ 78 (110)
++++.+.+.. ....|++|||+|.+. ....+.|+..|+. ....+++|.+|+.++.|.++++
T Consensus 103 IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKtLEE--PP~~tifILaTte~~KLl~TI~ 166 (725)
T PRK07133 103 IRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKTLEE--PPKHVIFILATTEVHKIPLTIL 166 (725)
T ss_pred HHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHHhhc--CCCceEEEEEcCChhhhhHHHH
Confidence 4455544442 234699999999873 2356678888887 4567888888899999999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHH
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKF 103 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~ 103 (110)
+ |+ ..+.|.+|+.++-..+++.
T Consensus 167 S--Rc-q~ieF~~L~~eeI~~~L~~ 188 (725)
T PRK07133 167 S--RV-QRFNFRRISEDEIVSRLEF 188 (725)
T ss_pred h--hc-eeEEccCCCHHHHHHHHHH
Confidence 9 88 4799999988886655554
No 104
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.56 E-value=0.00014 Score=55.57 Aligned_cols=79 Identities=11% Similarity=0.205 Sum_probs=51.4
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC---CCCccccCCCccc--eEEE
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD---IIDPAILRPGRLD--QLIY 88 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~---~ld~al~r~grfd--~~i~ 88 (110)
.+.+++|||++.+..+. ... .+|...++.+....+.++++++..|. .+++.+++ ||. ..+.
T Consensus 202 ~~dvLiIDDiq~l~~k~---------~~q---eelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~ 267 (445)
T PRK12422 202 NVDALFIEDIEVFSGKG---------ATQ---EEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIP 267 (445)
T ss_pred cCCEEEEcchhhhcCCh---------hhH---HHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEe
Confidence 56799999999874322 111 12333333332233445555555554 57799999 995 7899
Q ss_pred ecCCCHHHHHHHHHHHhh
Q psy13774 89 IPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 89 ~~~P~~~~R~~~~~~~~~ 106 (110)
+.+|+.++|..+++...+
T Consensus 268 l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 268 LHPLTKEGLRSFLERKAE 285 (445)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 999999999988776543
No 105
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.56 E-value=0.00024 Score=54.00 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=60.3
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC--------CCCCEEEEEec----CCCCCCCccccCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG--------AKKNVFIIGAT----NRPDIIDPAILRPG 81 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi~tt----n~~~~ld~al~r~g 81 (110)
+-.||||||||.++.+.+++.. +.....+-..||..+.|.. ...++++|++- ..|.++=|.|.-
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~--DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G-- 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGP--DVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG-- 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCC--CCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--
Confidence 4579999999999977543222 2233446667888887731 23578888774 356778888886
Q ss_pred ccceEEEecCCCHHHHHHHH
Q psy13774 82 RLDQLIYIPLPDEIWLILSD 101 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~ 101 (110)
||...+.+..++.+.=..|+
T Consensus 325 R~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 325 RFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred ccceEEECCCCCHHHHHHHh
Confidence 99999999999988865555
No 106
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.56 E-value=0.0011 Score=48.08 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=49.2
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
+.+|+|||+|.+.. .....|...++... ....+|.+|+.+..+.+.+.+ |+ ..+.+.+|+.
T Consensus 126 ~~vlilDe~~~l~~--------------~~~~~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~ 186 (337)
T PRK12402 126 YKTILLDNAEALRE--------------DAQQALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTD 186 (337)
T ss_pred CcEEEEeCcccCCH--------------HHHHHHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCH
Confidence 46999999997721 12234555566542 223455566677788888888 76 5789999999
Q ss_pred HHHHHHHHHHh
Q psy13774 95 IWLILSDKFLY 105 (110)
Q Consensus 95 ~~R~~~~~~~~ 105 (110)
++...+++...
T Consensus 187 ~~~~~~l~~~~ 197 (337)
T PRK12402 187 DELVDVLESIA 197 (337)
T ss_pred HHHHHHHHHHH
Confidence 88887776644
No 107
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=0.00024 Score=56.17 Aligned_cols=78 Identities=9% Similarity=0.212 Sum_probs=51.6
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCC-C---CCCCccccCCCccc--eEE
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR-P---DIIDPAILRPGRLD--QLI 87 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~-~---~~ld~al~r~grfd--~~i 87 (110)
.+.+|+|||++.+..+.. .. ..|...++.+...++-+|| |+|. | ..+++.|++ ||. ..+
T Consensus 377 ~~DLLlIDDIq~l~gke~---------tq---eeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv 441 (617)
T PRK14086 377 EMDILLVDDIQFLEDKES---------TQ---EEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLIT 441 (617)
T ss_pred cCCEEEEehhccccCCHH---------HH---HHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceE
Confidence 578999999998853321 11 2333444444333444444 5554 3 367899999 994 567
Q ss_pred EecCCCHHHHHHHHHHHhh
Q psy13774 88 YIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 88 ~~~~P~~~~R~~~~~~~~~ 106 (110)
++..||.+.|..|++...+
T Consensus 442 ~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 442 DVQPPELETRIAILRKKAV 460 (617)
T ss_pred EcCCCCHHHHHHHHHHHHH
Confidence 8899999999988877654
No 108
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.54 E-value=0.00039 Score=51.37 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=52.7
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-----------CCCCCEEEEEecCCCC-CCCccccCCCcc
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-----------GAKKNVFIIGATNRPD-IIDPAILRPGRL 83 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----------~~~~~v~vi~ttn~~~-~ld~al~r~grf 83 (110)
.++|+||++.+- ..+.+.|+..|+.- .-..++++++|+|-.+ .++++++. ||
T Consensus 130 GiL~lDEInrl~--------------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF 193 (334)
T PRK13407 130 GYLYIDEVNLLE--------------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RF 193 (334)
T ss_pred CeEEecChHhCC--------------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hc
Confidence 589999999762 23444555555431 1235789999988654 68999999 99
Q ss_pred ceEEEecCCCH-HHHHHHHHH
Q psy13774 84 DQLIYIPLPDE-IWLILSDKF 103 (110)
Q Consensus 84 d~~i~~~~P~~-~~R~~~~~~ 103 (110)
...|.++.|.. ++|.++++.
T Consensus 194 ~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 194 GLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred ceEEEcCCCCcHHHHHHHHHH
Confidence 99999999886 778877664
No 109
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.54 E-value=0.0004 Score=49.41 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=50.3
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-------C-------CCCCEEEEEecCCCC-----CCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-------G-------AKKNVFIIGATNRPD-----IID 74 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-------~-------~~~~v~vi~ttn~~~-----~ld 74 (110)
.+.+++|||+|.+- ..+.+.|+..+++- . ...++.+|+|+|... .++
T Consensus 105 ~g~~lllDEi~r~~--------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~ 170 (262)
T TIGR02640 105 EGFTLVYDEFTRSK--------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQ 170 (262)
T ss_pred cCCEEEEcchhhCC--------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceeccc
Confidence 35799999999652 12333344444321 0 113567899999763 668
Q ss_pred ccccCCCccceEEEecCCCHHHHHHHHHHH
Q psy13774 75 PAILRPGRLDQLIYIPLPDEIWLILSDKFL 104 (110)
Q Consensus 75 ~al~r~grfd~~i~~~~P~~~~R~~~~~~~ 104 (110)
+++++ || ..++++.|+.++-..|++..
T Consensus 171 ~aL~~--R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 171 DALLD--RL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred HHHHh--hc-EEEECCCCCHHHHHHHHHHh
Confidence 99999 99 67999999988877776643
No 110
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.54 E-value=0.00029 Score=49.33 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=47.9
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-EEEEEecCCCCC---CCccccCCCccc--eEEEe
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKN-VFIIGATNRPDI---IDPAILRPGRLD--QLIYI 89 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~-v~vi~ttn~~~~---ld~al~r~grfd--~~i~~ 89 (110)
.+|+|||++.+..+. .....+-+++ +.....++ -+++.+++.|.. +.|.+++ |+. ..+.+
T Consensus 99 dlliiDdi~~~~~~~---------~~~~~lf~l~---n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l 164 (235)
T PRK08084 99 SLVCIDNIECIAGDE---------LWEMAIFDLY---NRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKL 164 (235)
T ss_pred CEEEEeChhhhcCCH---------HHHHHHHHHH---HHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeee
Confidence 589999999773221 1222232333 32222333 355555566655 6799999 986 88999
Q ss_pred cCCCHHHHHHHHHH
Q psy13774 90 PLPDEIWLILSDKF 103 (110)
Q Consensus 90 ~~P~~~~R~~~~~~ 103 (110)
.+|+.++|..+++.
T Consensus 165 ~~~~~~~~~~~l~~ 178 (235)
T PRK08084 165 QPLSDEEKLQALQL 178 (235)
T ss_pred cCCCHHHHHHHHHH
Confidence 99999999887765
No 111
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.00075 Score=52.38 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=56.0
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
.+.||+|||+|.+. ....+.|+..++. ....+++|.+|+.+..+.+++.+ |+. .++|..|+
T Consensus 116 ~~kVVIIDEad~ls--------------~~a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls 176 (504)
T PRK14963 116 GRKVYILDEAHMMS--------------KSAFNALLKTLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLT 176 (504)
T ss_pred CCeEEEEECccccC--------------HHHHHHHHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCC
Confidence 45799999998551 3356677888776 34567888888999999999998 874 79999999
Q ss_pred HHHHHHHHHHHh
Q psy13774 94 EIWLILSDKFLY 105 (110)
Q Consensus 94 ~~~R~~~~~~~~ 105 (110)
.++-..+++...
T Consensus 177 ~~el~~~L~~i~ 188 (504)
T PRK14963 177 EEEIAGKLRRLL 188 (504)
T ss_pred HHHHHHHHHHHH
Confidence 888776665544
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.00051 Score=54.47 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=55.5
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
...||+|||+|.+. ....+.|+..++. ....+++|++|+.+..+.+.+++ |+ ..|+|+.++
T Consensus 119 ~~kVIIIDEad~Lt--------------~~a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs 179 (624)
T PRK14959 119 RYKVFIIDEAHMLT--------------REAFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLS 179 (624)
T ss_pred CceEEEEEChHhCC--------------HHHHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCC
Confidence 34799999999882 2345678888876 34578888999999999999998 87 468999998
Q ss_pred HHHHHHHHHHH
Q psy13774 94 EIWLILSDKFL 104 (110)
Q Consensus 94 ~~~R~~~~~~~ 104 (110)
.++-..+++..
T Consensus 180 ~~eL~~~L~~i 190 (624)
T PRK14959 180 EAGLEAHLTKV 190 (624)
T ss_pred HHHHHHHHHHH
Confidence 88766555543
No 113
>PLN03025 replication factor C subunit; Provisional
Probab=97.48 E-value=0.00043 Score=50.46 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=52.0
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
.+.||+|||+|.+... ..+.|+..++... ....+|.+||.+..+.+++++ |+ ..+.|+.|+
T Consensus 99 ~~kviiiDE~d~lt~~--------------aq~aL~~~lE~~~--~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~ 159 (319)
T PLN03025 99 RHKIVILDEADSMTSG--------------AQQALRRTMEIYS--NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLS 159 (319)
T ss_pred CeEEEEEechhhcCHH--------------HHHHHHHHHhccc--CCceEEEEeCCccccchhHHH--hh-hcccCCCCC
Confidence 3579999999988321 1234555565432 234466788888999999998 87 579999999
Q ss_pred HHHHHHHHHHHh
Q psy13774 94 EIWLILSDKFLY 105 (110)
Q Consensus 94 ~~~R~~~~~~~~ 105 (110)
.++...+++...
T Consensus 160 ~~~l~~~L~~i~ 171 (319)
T PLN03025 160 DQEILGRLMKVV 171 (319)
T ss_pred HHHHHHHHHHHH
Confidence 988776666544
No 114
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.46 E-value=0.00025 Score=48.73 Aligned_cols=78 Identities=13% Similarity=0.197 Sum_probs=46.4
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC---ccccCCCcc--ceEEE
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID---PAILRPGRL--DQLIY 88 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld---~al~r~grf--d~~i~ 88 (110)
.+.+|+|||+|.+.... .....+..+ ++........+++.++..+..++ +.+.+ |+ ...|.
T Consensus 90 ~~~lLvIDdi~~l~~~~---------~~~~~L~~~---l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~ 155 (226)
T TIGR03420 90 QADLVCLDDVEAIAGQP---------EWQEALFHL---YNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQ 155 (226)
T ss_pred cCCEEEEeChhhhcCCh---------HHHHHHHHH---HHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEe
Confidence 34699999999873211 112223233 33322223345555554554433 67777 76 47899
Q ss_pred ecCCCHHHHHHHHHHHh
Q psy13774 89 IPLPDEIWLILSDKFLY 105 (110)
Q Consensus 89 ~~~P~~~~R~~~~~~~~ 105 (110)
+++|+.+++..+++.+.
T Consensus 156 l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 156 LPPLSDEEKIAALQSRA 172 (226)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 99999999888777654
No 115
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0005 Score=53.59 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=54.2
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCHH
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
.|++|||+|.+. ....+.|++.++. ....+++|.+|+.++.+.+.+++ |+ ..++|..|+.+
T Consensus 121 kVvIIDEad~ls--------------~~a~naLLK~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~ 181 (527)
T PRK14969 121 KVYIIDEVHMLS--------------KSAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPP 181 (527)
T ss_pred eEEEEcCcccCC--------------HHHHHHHHHHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHH
Confidence 599999999773 2345678888887 35677888888889999999998 87 77999999888
Q ss_pred HHHHHHHHH
Q psy13774 96 WLILSDKFL 104 (110)
Q Consensus 96 ~R~~~~~~~ 104 (110)
+=..+++..
T Consensus 182 ~i~~~L~~i 190 (527)
T PRK14969 182 LIVSHLQHI 190 (527)
T ss_pred HHHHHHHHH
Confidence 766554443
No 116
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.00052 Score=53.99 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=54.1
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCHH
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
-|++|||+|.+. ....+.|+..|+. ....+++|.+|+.++.|.+++++ |+ ..+.|..++.+
T Consensus 121 KVvIIdev~~Lt--------------~~a~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~ 181 (576)
T PRK14965 121 KIFIIDEVHMLS--------------TNAFNALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQ 181 (576)
T ss_pred eEEEEEChhhCC--------------HHHHHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHH
Confidence 499999999773 2345788888887 45678888899999999999998 87 57889888877
Q ss_pred HHHHHHHHH
Q psy13774 96 WLILSDKFL 104 (110)
Q Consensus 96 ~R~~~~~~~ 104 (110)
+-..+++..
T Consensus 182 ~i~~~L~~i 190 (576)
T PRK14965 182 KIVDRLRYI 190 (576)
T ss_pred HHHHHHHHH
Confidence 755554443
No 117
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0005 Score=53.12 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=54.9
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
+.|++|||+|.+. ....+.|+..++.. ...+++|.+|+.++.+++++.+ |+. .+.+.+|+.
T Consensus 120 ~KVvIIDEad~Lt--------------~~a~naLLk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~ 180 (486)
T PRK14953 120 YKVYIIDEAHMLT--------------KEAFNALLKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTK 180 (486)
T ss_pred eeEEEEEChhhcC--------------HHHHHHHHHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCH
Confidence 4699999999773 22456677777763 4456677777888999999998 874 799999999
Q ss_pred HHHHHHHHHHhh
Q psy13774 95 IWLILSDKFLYK 106 (110)
Q Consensus 95 ~~R~~~~~~~~~ 106 (110)
++...+++...+
T Consensus 181 ~el~~~L~~i~k 192 (486)
T PRK14953 181 EQIKEYLKRICN 192 (486)
T ss_pred HHHHHHHHHHHH
Confidence 988877766543
No 118
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.00049 Score=50.56 Aligned_cols=68 Identities=21% Similarity=0.167 Sum_probs=53.0
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
.-|++|||+|.+. ....+.|++.+++ ....+++|.+|+.+..|-|++++ |. ..+++.+|+.
T Consensus 111 ~kvviI~~a~~~~--------------~~a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~ 171 (329)
T PRK08058 111 KKVYIIEHADKMT--------------ASAANSLLKFLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPP 171 (329)
T ss_pred ceEEEeehHhhhC--------------HHHHHHHHHHhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCH
Confidence 3599999998762 3355678888887 45677888899999999999999 87 6799999988
Q ss_pred HHHHHHH
Q psy13774 95 IWLILSD 101 (110)
Q Consensus 95 ~~R~~~~ 101 (110)
++-..++
T Consensus 172 ~~~~~~L 178 (329)
T PRK08058 172 ESLIQRL 178 (329)
T ss_pred HHHHHHH
Confidence 7654444
No 119
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.00062 Score=54.57 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=54.4
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
..|++|||+|.+. ....+.|++.|+. ....+.+|.+|+.+..+.+.+++ |+ ..+.|..++.
T Consensus 120 ~KVIIIDEad~Ls--------------~~A~NALLKtLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~ 180 (709)
T PRK08691 120 YKVYIIDEVHMLS--------------KSAFNAMLKTLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTA 180 (709)
T ss_pred cEEEEEECccccC--------------HHHHHHHHHHHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCH
Confidence 3699999999662 2345678888886 34567888888999999999997 88 6688888888
Q ss_pred HHHHHHHHHHh
Q psy13774 95 IWLILSDKFLY 105 (110)
Q Consensus 95 ~~R~~~~~~~~ 105 (110)
++=..+++..+
T Consensus 181 eeI~~~L~~Il 191 (709)
T PRK08691 181 QQVADHLAHVL 191 (709)
T ss_pred HHHHHHHHHHH
Confidence 77665555444
No 120
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.38 E-value=0.00051 Score=47.50 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=45.9
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCC-C--CCCCccccCCCcc--ceEEE
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR-P--DIIDPAILRPGRL--DQLIY 88 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~-~--~~ld~al~r~grf--d~~i~ 88 (110)
.+.+|+|||+|.+.. ... ..+...++........+++.+++. | ..+.+.+.+ || ...++
T Consensus 90 ~~~~liiDdi~~l~~-----------~~~---~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~ 153 (227)
T PRK08903 90 EAELYAVDDVERLDD-----------AQQ---IALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYE 153 (227)
T ss_pred cCCEEEEeChhhcCc-----------hHH---HHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEE
Confidence 457899999997621 112 233444444433444334444443 3 135577777 77 47999
Q ss_pred ecCCCHHHHHHHHHHHh
Q psy13774 89 IPLPDEIWLILSDKFLY 105 (110)
Q Consensus 89 ~~~P~~~~R~~~~~~~~ 105 (110)
+++|+.+++..+++.+.
T Consensus 154 l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 154 LKPLSDADKIAALKAAA 170 (227)
T ss_pred ecCCCHHHHHHHHHHHH
Confidence 99999988776665543
No 121
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0015 Score=51.96 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=58.5
Q ss_pred HHHHHHHHHhc----CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCcccc
Q psy13774 3 IATGASMARAA----APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 3 l~~~F~~A~~~----~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~ 78 (110)
++++.+.+... ...||+|||+|.+. ....+.|+..++. ....+++|++|++++.+-++++
T Consensus 106 IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 106 IRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFNALLKTLEE--PPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred HHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHHHHHHHHhc--CCcCeEEEEEeCChhhhhHHHH
Confidence 55666655421 23699999999772 2355678888886 4567888888889999999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHH
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKF 103 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~ 103 (110)
+ |+ ..++|..++.++=..+++.
T Consensus 170 S--Rc-~~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 170 S--RC-QRFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred h--he-eEEEecCCCHHHHHHHHHH
Confidence 8 87 5688888877664444443
No 122
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.37 E-value=0.00054 Score=45.43 Aligned_cols=60 Identities=28% Similarity=0.396 Sum_probs=45.3
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 92 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P 92 (110)
..-|++|||+|.+ .....+.||..|++ ...++++|.+|+.++.|-|.+++ |. ..+.+++.
T Consensus 102 ~~KviiI~~ad~l--------------~~~a~NaLLK~LEe--pp~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 102 KYKVIIIDEADKL--------------TEEAQNALLKTLEE--PPENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp SSEEEEEETGGGS---------------HHHHHHHHHHHHS--TTTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred CceEEEeehHhhh--------------hHHHHHHHHHHhcC--CCCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 3569999999977 24567789999998 46799999999999999999999 87 55666543
No 123
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.36 E-value=0.0015 Score=51.72 Aligned_cols=84 Identities=18% Similarity=0.095 Sum_probs=60.3
Q ss_pred HHHHHHHHHhc----CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCcccc
Q psy13774 3 IATGASMARAA----APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 3 l~~~F~~A~~~----~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~ 78 (110)
|+++.+.+... ...||+|||+|.+. ....+.|+..|... ...+++|.+|+.++.+.+.++
T Consensus 117 IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~a~naLLKtLEeP--p~~~~fIl~tte~~kll~tI~ 180 (598)
T PRK09111 117 IREIIESVRYRPVSARYKVYIIDEVHMLS--------------TAAFNALLKTLEEP--PPHVKFIFATTEIRKVPVTVL 180 (598)
T ss_pred HHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HHHHHHHHHHHHhC--CCCeEEEEEeCChhhhhHHHH
Confidence 45555554322 24699999999772 23467788888773 456777778888889999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
+ |+ ..++|..|+.++-..+++...
T Consensus 181 S--Rc-q~~~f~~l~~~el~~~L~~i~ 204 (598)
T PRK09111 181 S--RC-QRFDLRRIEADVLAAHLSRIA 204 (598)
T ss_pred h--he-eEEEecCCCHHHHHHHHHHHH
Confidence 8 87 579999999887666655543
No 124
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0014 Score=53.93 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=55.9
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
..|++|||+|.|. ....+.||..|.. ....+.+|++|+.+..|.+.+++ |+ ..+.|..++.
T Consensus 120 ~KViIIDEAh~LT--------------~eAqNALLKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~ 180 (944)
T PRK14949 120 FKVYLIDEVHMLS--------------RSSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQ 180 (944)
T ss_pred cEEEEEechHhcC--------------HHHHHHHHHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCH
Confidence 3699999999882 4466788888887 35677788889999999999999 87 6789988887
Q ss_pred HHHHHHHHHHh
Q psy13774 95 IWLILSDKFLY 105 (110)
Q Consensus 95 ~~R~~~~~~~~ 105 (110)
++-..+++..+
T Consensus 181 eEI~~~L~~il 191 (944)
T PRK14949 181 DEIGTQLNHIL 191 (944)
T ss_pred HHHHHHHHHHH
Confidence 77665555433
No 125
>PRK05642 DNA replication initiation factor; Validated
Probab=97.36 E-value=0.00056 Score=47.90 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=51.5
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC---CCccccCCCccc--eEEEec
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI---IDPAILRPGRLD--QLIYIP 90 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~---ld~al~r~grfd--~~i~~~ 90 (110)
.+++|||++.+..+. .....|...++.+...++.++++++..|.. ..|++++ ||. ..+.+.
T Consensus 99 d~LiiDDi~~~~~~~------------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~ 164 (234)
T PRK05642 99 ELVCLDDLDVIAGKA------------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMR 164 (234)
T ss_pred CEEEEechhhhcCCh------------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecC
Confidence 588999999773221 112345555565555667788888776643 3689999 984 678889
Q ss_pred CCCHHHHHHHHH
Q psy13774 91 LPDEIWLILSDK 102 (110)
Q Consensus 91 ~P~~~~R~~~~~ 102 (110)
.|+.++|..+++
T Consensus 165 ~~~~e~~~~il~ 176 (234)
T PRK05642 165 GLSDEDKLRALQ 176 (234)
T ss_pred CCCHHHHHHHHH
Confidence 999999988777
No 126
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.35 E-value=0.00089 Score=49.52 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=51.8
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc---------C--CCCCCEEEEEecCCCC-CCCccccCCCc
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG---------M--GAKKNVFIIGATNRPD-IIDPAILRPGR 82 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~---------~--~~~~~v~vi~ttn~~~-~ld~al~r~gr 82 (110)
..++|+||++.+- ....+.|+..|+. . .-..++++++|+|-.+ .++++++. |
T Consensus 132 ~GvL~lDEi~~L~--------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--R 195 (337)
T TIGR02030 132 RGILYIDEVNLLE--------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--R 195 (337)
T ss_pred CCEEEecChHhCC--------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--h
Confidence 4799999999762 2233344444432 1 1134788888888555 69999999 9
Q ss_pred cceEEEecCCCH-HHHHHHHHH
Q psy13774 83 LDQLIYIPLPDE-IWLILSDKF 103 (110)
Q Consensus 83 fd~~i~~~~P~~-~~R~~~~~~ 103 (110)
|...+.++.|+. ++|.++++.
T Consensus 196 f~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 196 FGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred cceEEECCCCCCHHHHHHHHHh
Confidence 999999999986 777777655
No 127
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0016 Score=51.79 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=54.5
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCHH
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
-|++|||+|.+. ....+.|+..++. ....+.+|.+|+.+..+.+.+++ |+ ..++|..++.+
T Consensus 126 KV~IIDEvh~Ls--------------~~a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~e 186 (618)
T PRK14951 126 KVFMIDEVHMLT--------------NTAFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPE 186 (618)
T ss_pred eEEEEEChhhCC--------------HHHHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHH
Confidence 499999999872 2245678877776 35677888888899999999998 87 77999888888
Q ss_pred HHHHHHHHHh
Q psy13774 96 WLILSDKFLY 105 (110)
Q Consensus 96 ~R~~~~~~~~ 105 (110)
+-..+++...
T Consensus 187 ei~~~L~~i~ 196 (618)
T PRK14951 187 TVLEHLTQVL 196 (618)
T ss_pred HHHHHHHHHH
Confidence 7666655443
No 128
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.00099 Score=51.57 Aligned_cols=72 Identities=19% Similarity=0.134 Sum_probs=56.4
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
.-|++|||+|.+. ....+.|+..++. ....+.+|.+|+.++.+.+.+++ |+ ..+++..++.
T Consensus 117 ~KVvIIDEah~Ls--------------~~A~NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~ 177 (491)
T PRK14964 117 FKVYIIDEVHMLS--------------NSAFNALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPT 177 (491)
T ss_pred ceEEEEeChHhCC--------------HHHHHHHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccH
Confidence 4599999999772 2356778888887 34578888888999999999999 87 6699999998
Q ss_pred HHHHHHHHHHh
Q psy13774 95 IWLILSDKFLY 105 (110)
Q Consensus 95 ~~R~~~~~~~~ 105 (110)
++-..+++...
T Consensus 178 ~el~~~L~~ia 188 (491)
T PRK14964 178 DKLVEHLVDIA 188 (491)
T ss_pred HHHHHHHHHHH
Confidence 88776666544
No 129
>PRK04195 replication factor C large subunit; Provisional
Probab=97.33 E-value=0.0012 Score=50.72 Aligned_cols=75 Identities=16% Similarity=0.078 Sum_probs=51.2
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc-cccCCCccceEEEecCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP-AILRPGRLDQLIYIPLP 92 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~-al~r~grfd~~i~~~~P 92 (110)
.+.+|+|||+|.+..+. .......++..+.. .+..+|.++|.+..+++ .+++ |+ ..|.|+.|
T Consensus 98 ~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~ 160 (482)
T PRK04195 98 RRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPIILTANDPYDPSLRELRN--AC-LMIEFKRL 160 (482)
T ss_pred CCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEEEeccCccccchhhHhc--cc-eEEEecCC
Confidence 57899999999885421 11233455555553 23356678899998887 5655 44 67999999
Q ss_pred CHHHHHHHHHHHh
Q psy13774 93 DEIWLILSDKFLY 105 (110)
Q Consensus 93 ~~~~R~~~~~~~~ 105 (110)
+..+...+++...
T Consensus 161 ~~~~i~~~L~~i~ 173 (482)
T PRK04195 161 STRSIVPVLKRIC 173 (482)
T ss_pred CHHHHHHHHHHHH
Confidence 9998877666544
No 130
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.32 E-value=0.00071 Score=51.50 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=59.5
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC--------CCCCEEEEEecC----CCCCCCccccCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG--------AKKNVFIIGATN----RPDIIDPAILRPG 81 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi~ttn----~~~~ld~al~r~g 81 (110)
+-.||||||+|.++.+..+...+ .....+-..||..+.+.. ...++++|++-. .|.++=|.|.-
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~D--vS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G-- 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGAD--VSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG-- 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCC--CCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--
Confidence 45799999999999765322222 233446667888887631 235788887754 56677778875
Q ss_pred ccceEEEecCCCHHHHHHHH
Q psy13774 82 RLDQLIYIPLPDEIWLILSD 101 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~ 101 (110)
||...+.+..++.+.=..|+
T Consensus 323 R~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 323 RFPIRVELQALTTDDFERIL 342 (441)
T ss_pred ccceEEECCCCCHHHHHHHh
Confidence 99999999999998865554
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.32 E-value=0.0015 Score=49.98 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=55.8
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 92 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P 92 (110)
....||+|||+|.+. ....+.|+..++.. ...+++|++|+.+..|.+++++ |+ ..+++..+
T Consensus 120 ~~~kvvIIdead~lt--------------~~~~n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l 180 (451)
T PRK06305 120 SRYKIYIIDEVHMLT--------------KEAFNSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRI 180 (451)
T ss_pred CCCEEEEEecHHhhC--------------HHHHHHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCC
Confidence 456899999999773 12356788888873 4577788888999999999998 87 46899999
Q ss_pred CHHHHHHHHHHH
Q psy13774 93 DEIWLILSDKFL 104 (110)
Q Consensus 93 ~~~~R~~~~~~~ 104 (110)
+.++-..+++..
T Consensus 181 ~~~el~~~L~~~ 192 (451)
T PRK06305 181 PEETIIDKLALI 192 (451)
T ss_pred CHHHHHHHHHHH
Confidence 888866555544
No 132
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.00099 Score=50.26 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcC----CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecC-CC-CCCCcc
Q psy13774 3 IATGASMARAAA----PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN-RP-DIIDPA 76 (110)
Q Consensus 3 l~~~F~~A~~~~----P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn-~~-~~ld~a 76 (110)
|+++|+.|+... ..|+|||||+.+-... + ..||-.+ +...+++||+|. +| -.|.+|
T Consensus 89 lr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q----Q----------D~lLp~v----E~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 89 LREIIEEARKNRLLGRRTILFLDEIHRFNKAQ----Q----------DALLPHV----ENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred HHHHHHHHHHHHhcCCceEEEEehhhhcChhh----h----------hhhhhhh----cCCeEEEEeccCCCCCeeecHH
Confidence 788999996554 4899999999883211 1 1244444 456677777654 55 589999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHH
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDK 102 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~ 102 (110)
+++ |. ..+.+.+.+.++-...++
T Consensus 151 LlS--R~-~vf~lk~L~~~di~~~l~ 173 (436)
T COG2256 151 LLS--RA-RVFELKPLSSEDIKKLLK 173 (436)
T ss_pred Hhh--hh-heeeeecCCHHHHHHHHH
Confidence 999 86 567888888777654443
No 133
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0005 Score=53.41 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=52.5
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCHH
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
.|++|||+|.+. ....+.|+..|+.. ...+.+|.+|+.+..+.+.+++ |+ ..++|..++.+
T Consensus 121 kV~iIDE~~~ls--------------~~a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~ 181 (509)
T PRK14958 121 KVYLIDEVHMLS--------------GHSFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPL 181 (509)
T ss_pred EEEEEEChHhcC--------------HHHHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHH
Confidence 599999999873 23456788888873 4567888888999999999998 87 66888887776
Q ss_pred HHHHHHHHH
Q psy13774 96 WLILSDKFL 104 (110)
Q Consensus 96 ~R~~~~~~~ 104 (110)
+-..+++..
T Consensus 182 ~i~~~l~~i 190 (509)
T PRK14958 182 QIAAHCQHL 190 (509)
T ss_pred HHHHHHHHH
Confidence 654444433
No 134
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.002 Score=50.86 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=56.1
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
.-|++|||+|.+. ....+.||..|.. ....+++|.+|+.++.|.+++++ |. ..++|..++.
T Consensus 119 ~KVvIIDEah~Lt--------------~~A~NALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~ 179 (584)
T PRK14952 119 YRIFIVDEAHMVT--------------TAGFNALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPP 179 (584)
T ss_pred ceEEEEECCCcCC--------------HHHHHHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCH
Confidence 3599999999773 2256678888887 45688888888999999999999 85 6799999888
Q ss_pred HHHHHHHHHHh
Q psy13774 95 IWLILSDKFLY 105 (110)
Q Consensus 95 ~~R~~~~~~~~ 105 (110)
++-..+++...
T Consensus 180 ~~i~~~L~~i~ 190 (584)
T PRK14952 180 RTMRALIARIC 190 (584)
T ss_pred HHHHHHHHHHH
Confidence 77666655544
No 135
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0013 Score=51.97 Aligned_cols=71 Identities=21% Similarity=0.139 Sum_probs=55.1
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCHH
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
.|++|||+|.+. ....+.|+..++. ....+++|++|+.+..+.+++++ |+. .++|..|+.+
T Consensus 121 KVIIIDEad~Lt--------------~~A~NaLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~ 181 (605)
T PRK05896 121 KVYIIDEAHMLS--------------TSAWNALLKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNS 181 (605)
T ss_pred EEEEEechHhCC--------------HHHHHHHHHHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHH
Confidence 599999999773 1234678888887 35578888888999999999999 874 7999999988
Q ss_pred HHHHHHHHHh
Q psy13774 96 WLILSDKFLY 105 (110)
Q Consensus 96 ~R~~~~~~~~ 105 (110)
+-..+++...
T Consensus 182 eL~~~L~~il 191 (605)
T PRK05896 182 ELQELLKSIA 191 (605)
T ss_pred HHHHHHHHHH
Confidence 8766655543
No 136
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.24 E-value=0.0018 Score=50.29 Aligned_cols=75 Identities=21% Similarity=0.189 Sum_probs=51.3
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc---------CC--CCCCEEEEEecCCCC------------
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG---------MG--AKKNVFIIGATNRPD------------ 71 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~---------~~--~~~~v~vi~ttn~~~------------ 71 (110)
..+++|||+|.+-. ...+.|+..|++ .. -..+..||||+|-.+
T Consensus 301 ~Gil~iDEi~~l~~--------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n 366 (509)
T smart00350 301 NGVCCIDEFDKMDD--------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEEN 366 (509)
T ss_pred CCEEEEechhhCCH--------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhc
Confidence 46899999997721 122233334432 10 125788999999653
Q ss_pred -CCCccccCCCccceEEEe-cCCCHHHHHHHHHHHh
Q psy13774 72 -IIDPAILRPGRLDQLIYI-PLPDEIWLILSDKFLY 105 (110)
Q Consensus 72 -~ld~al~r~grfd~~i~~-~~P~~~~R~~~~~~~~ 105 (110)
.+++++++ |||..+.+ +.|+.+.+.++.++.+
T Consensus 367 ~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 367 IDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred cCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 69999999 99986555 7899999888877654
No 137
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0015 Score=52.23 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=55.4
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
...|++|||+|.|. ....+.|+..++. ....+.+|++|+.+..+++.+++ |+ ..+.|..++
T Consensus 118 k~KV~IIDEVh~LS--------------~~A~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs 178 (702)
T PRK14960 118 RFKVYLIDEVHMLS--------------THSFNALLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLA 178 (702)
T ss_pred CcEEEEEechHhcC--------------HHHHHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCC
Confidence 34699999999772 2345678888876 34677888888999999999998 88 679999998
Q ss_pred HHHHHHHHHHHh
Q psy13774 94 EIWLILSDKFLY 105 (110)
Q Consensus 94 ~~~R~~~~~~~~ 105 (110)
.++-..+++..+
T Consensus 179 ~eEI~k~L~~Il 190 (702)
T PRK14960 179 VDEITKHLGAIL 190 (702)
T ss_pred HHHHHHHHHHHH
Confidence 887665555443
No 138
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.0017 Score=50.73 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=54.0
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCHH
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
-|++|||+|.+. ....+.|+..+... ...+.+|.+|+.+..|.+++++ |. ..++|.+++.+
T Consensus 119 KVvIIDEad~Lt--------------~~A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ 179 (535)
T PRK08451 119 KIFIIDEVHMLT--------------KEAFNALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQN 179 (535)
T ss_pred EEEEEECcccCC--------------HHHHHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHH
Confidence 499999998772 33566788888874 4567777778889999999999 86 68999999887
Q ss_pred HHHHHHHHHh
Q psy13774 96 WLILSDKFLY 105 (110)
Q Consensus 96 ~R~~~~~~~~ 105 (110)
+-..+++..+
T Consensus 180 ei~~~L~~Il 189 (535)
T PRK08451 180 SIISHLKTIL 189 (535)
T ss_pred HHHHHHHHHH
Confidence 7665555433
No 139
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0027 Score=49.81 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=54.1
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
..|++|||+|.+. ....+.|+..++. ....+++|++|+.+..+.+++++ |+ ..++|..++.
T Consensus 120 ~kViIIDEa~~ls--------------~~a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~ 180 (546)
T PRK14957 120 YKVYLIDEVHMLS--------------KQSFNALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQ 180 (546)
T ss_pred cEEEEEechhhcc--------------HHHHHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCH
Confidence 4699999999772 2355678888886 34667777777889999999998 87 7899999988
Q ss_pred HHHHHHHHHH
Q psy13774 95 IWLILSDKFL 104 (110)
Q Consensus 95 ~~R~~~~~~~ 104 (110)
++-..+++..
T Consensus 181 ~eI~~~L~~i 190 (546)
T PRK14957 181 ADIKDQLKII 190 (546)
T ss_pred HHHHHHHHHH
Confidence 8765555443
No 140
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.0019 Score=46.93 Aligned_cols=57 Identities=21% Similarity=0.369 Sum_probs=47.4
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecC
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 91 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~ 91 (110)
.|++||++|.+. ....+.||+.+++ ...++++|.+|+.++.+-|.+++ |+ ..|.|+.
T Consensus 106 kV~II~~ad~m~--------------~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~ 162 (290)
T PRK07276 106 QVFIIKDADKMH--------------VNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK 162 (290)
T ss_pred EEEEeehhhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eeeeCCC
Confidence 699999999772 3456788999887 56778999999999999999999 87 5677865
No 141
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.16 E-value=0.0021 Score=47.37 Aligned_cols=78 Identities=17% Similarity=0.102 Sum_probs=52.9
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHh-----hhc----CCCCCCEEEEEecCCCC------------
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTE-----MDG----MGAKKNVFIIGATNRPD------------ 71 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~-----ld~----~~~~~~v~vi~ttn~~~------------ 71 (110)
..++++++||+|..-+ .....++.+|.. +.+ +.....+.||||+|..+
T Consensus 133 ~~g~illlDEin~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~ 201 (327)
T TIGR01650 133 QHNVALCFDEYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQ 201 (327)
T ss_pred hCCeEEEechhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeee
Confidence 3578999999996621 223344444442 111 11234688999999865
Q ss_pred CCCccccCCCccceEEEecCCCHHHHHHHHHH
Q psy13774 72 IIDPAILRPGRLDQLIYIPLPDEIWLILSDKF 103 (110)
Q Consensus 72 ~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~ 103 (110)
.++.|++. ||-..+.++.|+.+.-..|+..
T Consensus 202 ~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~ 231 (327)
T TIGR01650 202 QINQAQMD--RWSIVTTLNYLEHDNEAAIVLA 231 (327)
T ss_pred cCCHHHHh--heeeEeeCCCCCHHHHHHHHHh
Confidence 45889999 9988889999998887776653
No 142
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.0018 Score=47.05 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=53.4
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
.-|++||++|.+. ....+.|+..+.+ ...++++|.+|+.++.+-|++++ |. ..+++..|+.
T Consensus 94 ~kv~iI~~ad~m~--------------~~a~naLLK~LEe--pp~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~ 154 (313)
T PRK05564 94 KKVIIIYNSEKMT--------------EQAQNAFLKTIEE--PPKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSK 154 (313)
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCH
Confidence 4599999998662 3345678888887 45677777777889999999999 87 5899999988
Q ss_pred HHHHHHHH
Q psy13774 95 IWLILSDK 102 (110)
Q Consensus 95 ~~R~~~~~ 102 (110)
++-..+++
T Consensus 155 ~~~~~~l~ 162 (313)
T PRK05564 155 EEIEKFIS 162 (313)
T ss_pred HHHHHHHH
Confidence 87665554
No 143
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.14 E-value=0.0029 Score=50.27 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=34.0
Q ss_pred CEEEEE-ecCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 60 NVFIIG-ATNRPDIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 60 ~v~vi~-ttn~~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
.+++|+ ||+.++.+++++++ ||. .+++++.+.++...+++...+
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred eEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 455555 55678899999998 996 578888998888888776654
No 144
>PRK06620 hypothetical protein; Validated
Probab=97.12 E-value=0.0014 Score=45.37 Aligned_cols=72 Identities=10% Similarity=0.265 Sum_probs=50.5
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC--CCccccCCCccc--eEEEec
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI--IDPAILRPGRLD--QLIYIP 90 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~--ld~al~r~grfd--~~i~~~ 90 (110)
..+++|||+|.+ ... .+...++.+...++.++++++..|.. + |++++ |+. ..+.+.
T Consensus 86 ~d~lliDdi~~~--------------~~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~ 145 (214)
T PRK06620 86 YNAFIIEDIENW--------------QEP---ALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLN 145 (214)
T ss_pred CCEEEEeccccc--------------hHH---HHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeC
Confidence 368999999933 011 34444454445566788888877765 5 78999 985 369999
Q ss_pred CCCHHHHHHHHHHHhh
Q psy13774 91 LPDEIWLILSDKFLYK 106 (110)
Q Consensus 91 ~P~~~~R~~~~~~~~~ 106 (110)
.|+.+.+..+++...+
T Consensus 146 ~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 146 SPDDELIKILIFKHFS 161 (214)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999877765543
No 145
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.10 E-value=0.00063 Score=43.41 Aligned_cols=54 Identities=26% Similarity=0.446 Sum_probs=35.9
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-----------CCCC------CEEEEEecCCCC----C
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-----------GAKK------NVFIIGATNRPD----I 72 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----------~~~~------~v~vi~ttn~~~----~ 72 (110)
.++|++|||++.. ...++..++..+++- .... ++.+|+|+|..+ .
T Consensus 65 ~~~il~lDEin~a--------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~ 130 (139)
T PF07728_consen 65 KGGILVLDEINRA--------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKE 130 (139)
T ss_dssp EEEEEEESSCGG----------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTT
T ss_pred ceeEEEECCcccC--------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCc
Confidence 5799999999954 133444444444421 0111 389999999999 9
Q ss_pred CCccccCCCcc
Q psy13774 73 IDPAILRPGRL 83 (110)
Q Consensus 73 ld~al~r~grf 83 (110)
+++++++ ||
T Consensus 131 l~~al~~--Rf 139 (139)
T PF07728_consen 131 LSPALLD--RF 139 (139)
T ss_dssp TCHHHHT--T-
T ss_pred CCHHHHh--hC
Confidence 9999999 87
No 146
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.10 E-value=0.0019 Score=48.07 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=51.8
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc---------C--CCCCCEEEEEecCCCC-CCCccccCCCc
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG---------M--GAKKNVFIIGATNRPD-IIDPAILRPGR 82 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~---------~--~~~~~v~vi~ttn~~~-~ld~al~r~gr 82 (110)
..++|+||++.+-+ .+.+.|+..|+. . .-..++++++|.|-.+ .+.++++. |
T Consensus 145 ~GiL~lDEInrL~~--------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--R 208 (350)
T CHL00081 145 RGILYVDEVNLLDD--------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--R 208 (350)
T ss_pred CCEEEecChHhCCH--------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--H
Confidence 46999999997732 233334444432 1 1134788888888555 69999999 9
Q ss_pred cceEEEecCCC-HHHHHHHHHH
Q psy13774 83 LDQLIYIPLPD-EIWLILSDKF 103 (110)
Q Consensus 83 fd~~i~~~~P~-~~~R~~~~~~ 103 (110)
|...+.++.|+ .+.|.++++.
T Consensus 209 f~l~i~l~~~~~~~~e~~il~~ 230 (350)
T CHL00081 209 FGMHAEIRTVKDPELRVKIVEQ 230 (350)
T ss_pred hCceeecCCCCChHHHHHHHHh
Confidence 99999999998 5788777654
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.0027 Score=49.95 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=55.4
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
..-|++|||+|.+. ....+.|+..++. ....+++|++|+.++.+.+++++ |+. .++|.+|+
T Consensus 119 ~~KVvIIDEa~~Ls--------------~~a~naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~ 179 (563)
T PRK06647 119 RYRVYIIDEVHMLS--------------NSAFNALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLS 179 (563)
T ss_pred CCEEEEEEChhhcC--------------HHHHHHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCC
Confidence 34699999999772 2355678888876 45678888888889999999999 874 68999998
Q ss_pred HHHHHHHHHHH
Q psy13774 94 EIWLILSDKFL 104 (110)
Q Consensus 94 ~~~R~~~~~~~ 104 (110)
.++...+++..
T Consensus 180 ~~el~~~L~~i 190 (563)
T PRK06647 180 LEKIYNMLKKV 190 (563)
T ss_pred HHHHHHHHHHH
Confidence 88877665543
No 148
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.07 E-value=0.0045 Score=50.85 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=54.1
Q ss_pred HhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC--C-------CCCCEEEEEecCCCCC---------
Q psy13774 11 RAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM--G-------AKKNVFIIGATNRPDI--------- 72 (110)
Q Consensus 11 ~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~--~-------~~~~v~vi~ttn~~~~--------- 72 (110)
+.+.-+||++||+|.+ ...+.+.|++.++.= . .-.+.+||+|||....
T Consensus 664 ~~~p~~vlllDeieka--------------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~ 729 (852)
T TIGR03346 664 RRKPYSVVLFDEVEKA--------------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGD 729 (852)
T ss_pred HcCCCcEEEEeccccC--------------CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccc
Confidence 3444579999999965 233455666666431 1 1246889999997321
Q ss_pred ----------------CCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 73 ----------------IDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 73 ----------------ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
..|.|+. |+|..+.|.+++.+....|....+
T Consensus 730 ~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L 776 (852)
T TIGR03346 730 DYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQL 776 (852)
T ss_pred cHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHH
Confidence 3466776 999999999999998877665543
No 149
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0024 Score=47.61 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=55.8
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC--------CCCCEEEEEe----cCCCCCCCccccCCCc
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG--------AKKNVFIIGA----TNRPDIIDPAILRPGR 82 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi~t----tn~~~~ld~al~r~gr 82 (110)
-.||||||||.++.+.+.+..+ ..-+.+-..+|-.+.|.. ..+.+++||+ ...|.+|=|.|.- |
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~d--vSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--R 326 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPD--VSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--R 326 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCC--cchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--C
Confidence 4699999999999776533221 122334445666666531 2346888887 4578888888875 9
Q ss_pred cceEEEecCCCHHHHHHH
Q psy13774 83 LDQLIYIPLPDEIWLILS 100 (110)
Q Consensus 83 fd~~i~~~~P~~~~R~~~ 100 (110)
|.-++++...+.+.=..|
T Consensus 327 fPIRVEL~~Lt~~Df~rI 344 (444)
T COG1220 327 FPIRVELDALTKEDFERI 344 (444)
T ss_pred CceEEEcccCCHHHHHHH
Confidence 999999998887764433
No 150
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.0022 Score=46.98 Aligned_cols=69 Identities=20% Similarity=0.243 Sum_probs=53.3
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
..|++||++|.+. ....+.||+.+.... +.++|..|+.++.|-|++++ |. ..+.|++|+.
T Consensus 125 ~kVvII~~ae~m~--------------~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~ 184 (314)
T PRK07399 125 RKVVVIEDAETMN--------------EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSD 184 (314)
T ss_pred ceEEEEEchhhcC--------------HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCH
Confidence 4688889988762 335567888888753 44677788899999999999 87 6799999998
Q ss_pred HHHHHHHHH
Q psy13774 95 IWLILSDKF 103 (110)
Q Consensus 95 ~~R~~~~~~ 103 (110)
++-..+++.
T Consensus 185 ~~~~~~L~~ 193 (314)
T PRK07399 185 EQLEQVLKR 193 (314)
T ss_pred HHHHHHHHH
Confidence 876665554
No 151
>PRK09087 hypothetical protein; Validated
Probab=97.03 E-value=0.00074 Score=47.18 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=50.8
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC--C-CCccccCCCccc--eEEEec
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD--I-IDPAILRPGRLD--QLIYIP 90 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~--~-ld~al~r~grfd--~~i~~~ 90 (110)
.+|+|||+|.+. . .. .+|...++.+...++.++++++..|. . ..+.+++ ||. ..+++.
T Consensus 89 ~~l~iDDi~~~~----~-------~~----~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~ 151 (226)
T PRK09087 89 GPVLIEDIDAGG----F-------DE----TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIG 151 (226)
T ss_pred CeEEEECCCCCC----C-------CH----HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecC
Confidence 478889999651 0 11 12444555544455667777766554 2 3688999 986 789999
Q ss_pred CCCHHHHHHHHHHHhh
Q psy13774 91 LPDEIWLILSDKFLYK 106 (110)
Q Consensus 91 ~P~~~~R~~~~~~~~~ 106 (110)
.|+.+.|..+++...+
T Consensus 152 ~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 152 EPDDALLSQVIFKLFA 167 (226)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999988776554
No 152
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.03 E-value=0.0041 Score=44.69 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=50.3
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
+.+|+|||+|.+... ....|...++... ....+|.++|.+..+.+++.+ |+. .+++++|+.
T Consensus 103 ~~vviiDe~~~l~~~--------------~~~~L~~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~ 163 (319)
T PRK00440 103 FKIIFLDEADNLTSD--------------AQQALRRTMEMYS--QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKK 163 (319)
T ss_pred ceEEEEeCcccCCHH--------------HHHHHHHHHhcCC--CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCH
Confidence 469999999977311 2234566666543 234566677888888888888 775 589999998
Q ss_pred HHHHHHHHHHh
Q psy13774 95 IWLILSDKFLY 105 (110)
Q Consensus 95 ~~R~~~~~~~~ 105 (110)
++...+++...
T Consensus 164 ~ei~~~l~~~~ 174 (319)
T PRK00440 164 EAVAERLRYIA 174 (319)
T ss_pred HHHHHHHHHHH
Confidence 88776666554
No 153
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.005 Score=43.88 Aligned_cols=67 Identities=19% Similarity=0.046 Sum_probs=53.4
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
.--|++|+++|.+. ....+.||+.+++ +..++++|..|+.+..+.|.+++ |+ ..+.+..|+
T Consensus 89 ~~KViII~~ae~mt--------------~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~ 149 (263)
T PRK06581 89 GYKVAIIYSAELMN--------------LNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSI 149 (263)
T ss_pred CcEEEEEechHHhC--------------HHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCC
Confidence 34599999999773 3456788888888 56788999999999999999999 87 678888888
Q ss_pred HHHHHH
Q psy13774 94 EIWLIL 99 (110)
Q Consensus 94 ~~~R~~ 99 (110)
...=.+
T Consensus 150 ~~~~~e 155 (263)
T PRK06581 150 LHAYNE 155 (263)
T ss_pred HHHHHH
Confidence 755433
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.99 E-value=0.0067 Score=49.66 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=56.7
Q ss_pred HHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC---------CCCCEEEEEecCCCCC-----
Q psy13774 7 ASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG---------AKKNVFIIGATNRPDI----- 72 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~ttn~~~~----- 72 (110)
....+.+..+||+|||+|.. ...+.+.|++.++.-. ...+.++|.|||....
T Consensus 604 ~~~~~~~p~~VvllDeieka--------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~ 669 (821)
T CHL00095 604 TEAVRKKPYTVVLFDEIEKA--------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETN 669 (821)
T ss_pred HHHHHhCCCeEEEECChhhC--------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhh
Confidence 34444444599999999965 2345666777776411 1357899999986421
Q ss_pred --------------------------------CCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 73 --------------------------------IDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 73 --------------------------------ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
..|.++. |+|..|.|.+.+.++-..|.+..+
T Consensus 670 ~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 670 SGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred ccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHH
Confidence 2255676 999999999999888776655544
No 155
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.96 E-value=0.0016 Score=49.87 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=51.1
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC---CCCccccCCCccc--eEE
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD---IIDPAILRPGRLD--QLI 87 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~---~ld~al~r~grfd--~~i 87 (110)
..+.+++|||++.+..+. . ....|...++.....++-+|+.+...|. .+++.+.+ ||. ..+
T Consensus 205 ~~~dvLiIDDiq~l~~k~---------~---~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~ 270 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKE---------K---TNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSI 270 (450)
T ss_pred ccCCEEEEeccccccCCH---------H---HHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCcee
Confidence 356799999999874221 1 2223434444433334434444444443 46789999 985 678
Q ss_pred EecCCCHHHHHHHHHHHhh
Q psy13774 88 YIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 88 ~~~~P~~~~R~~~~~~~~~ 106 (110)
.+.+|+.++|..+++..++
T Consensus 271 ~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 271 AIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred ccCCcCHHHHHHHHHHHHH
Confidence 8899999999988877654
No 156
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0027 Score=49.41 Aligned_cols=76 Identities=25% Similarity=0.238 Sum_probs=57.5
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
.-|.+|||++-| +....+.||+.+.. ....|++|.+|..++.+++.+++ |+ .++.|..-+.
T Consensus 120 yKVyiIDEvHML--------------S~~afNALLKTLEE--PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~ 180 (515)
T COG2812 120 YKVYIIDEVHML--------------SKQAFNALLKTLEE--PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDL 180 (515)
T ss_pred ceEEEEecHHhh--------------hHHHHHHHhccccc--CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCH
Confidence 349999999966 35577888888887 57799999999999999999999 88 4577777676
Q ss_pred HHHHH-HHHHHhhccc
Q psy13774 95 IWLIL-SDKFLYKRKI 109 (110)
Q Consensus 95 ~~R~~-~~~~~~~~~~ 109 (110)
++-.. +-..+.+.+|
T Consensus 181 ~~I~~~L~~i~~~E~I 196 (515)
T COG2812 181 EEIAKHLAAILDKEGI 196 (515)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 66444 4444444443
No 157
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.96 E-value=0.0054 Score=50.43 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=54.8
Q ss_pred HHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC---------CCCCEEEEEecCCCC-------
Q psy13774 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG---------AKKNVFIIGATNRPD------- 71 (110)
Q Consensus 8 ~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~ttn~~~------- 71 (110)
...+++..|||+|||+|.. ...+.+.|++.+|.-. .-.+.++|.|||...
T Consensus 662 ~~v~~~p~svvllDEieka--------------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 662 EAVRRKPYSVVLLDEVEKA--------------HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred HHHHhCCCcEEEEechhhc--------------CHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 3445667799999999844 2335556666666421 125789999998521
Q ss_pred ----------------------CCCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 72 ----------------------IIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 72 ----------------------~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
.+.|+++. |++ .|.|.+.+.+.-..|.+..+
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L 780 (852)
T TIGR03345 728 ADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKL 780 (852)
T ss_pred cCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHH
Confidence 15577777 997 78999999888776655443
No 158
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0043 Score=44.59 Aligned_cols=68 Identities=29% Similarity=0.307 Sum_probs=52.4
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
.-||+|||+|.+.. ...+.++..+.. ...+..+|.+||.++.+-+.+++ |+ ..+.|++|+.
T Consensus 110 ~kviiidead~mt~--------------~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~ 170 (325)
T COG0470 110 YKVVIIDEADKLTE--------------DAANALLKTLEE--PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSR 170 (325)
T ss_pred ceEEEeCcHHHHhH--------------HHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchH
Confidence 46999999998843 345667777766 46678889999999999999999 87 5688887776
Q ss_pred HHHHHHH
Q psy13774 95 IWLILSD 101 (110)
Q Consensus 95 ~~R~~~~ 101 (110)
..+....
T Consensus 171 ~~~i~~~ 177 (325)
T COG0470 171 LEAIAWL 177 (325)
T ss_pred HHHHHHh
Confidence 6655443
No 159
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.91 E-value=0.0036 Score=49.47 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=52.1
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC---------C--CCCCEEEEEecCCCC---CCCccccCCC
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM---------G--AKKNVFIIGATNRPD---IIDPAILRPG 81 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~---------~--~~~~v~vi~ttn~~~---~ld~al~r~g 81 (110)
.++|+||++.+- ..+.+.|+..|+.- . -..++.+|+|+|..+ .++++++.
T Consensus 86 GvL~lDEi~rl~--------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld-- 149 (589)
T TIGR02031 86 GVLYVDMANLLD--------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD-- 149 (589)
T ss_pred CcEeccchhhCC--------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--
Confidence 589999999772 23444555555421 1 124688999888765 79999999
Q ss_pred ccceEEEecC-CCHHHHHHHHHHHh
Q psy13774 82 RLDQLIYIPL-PDEIWLILSDKFLY 105 (110)
Q Consensus 82 rfd~~i~~~~-P~~~~R~~~~~~~~ 105 (110)
||+.+|.+.. |+.++|.++++...
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHH
Confidence 9999988864 56777887766543
No 160
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.89 E-value=0.02 Score=38.79 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcC-CeEEEEccccccc-ccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC------CCCC
Q psy13774 3 IATGASMARAAA-PCVLFFDELDSIA-KSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP------DIID 74 (110)
Q Consensus 3 l~~~F~~A~~~~-P~ii~iDeiD~l~-~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~------~~ld 74 (110)
+..+++...+.. ..||+|||+|.+. ... .....+..+.+.++......++.+|.+++.. ..-.
T Consensus 106 l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~ 176 (234)
T PF01637_consen 106 LERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDK 176 (234)
T ss_dssp HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TT
T ss_pred HHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhccc
Confidence 456666666544 4999999999997 222 2356777777777775555555555554432 1222
Q ss_pred ccccCCCccceEEEecCCCHHHHHHHHHHH
Q psy13774 75 PAILRPGRLDQLIYIPLPDEIWLILSDKFL 104 (110)
Q Consensus 75 ~al~r~grfd~~i~~~~P~~~~R~~~~~~~ 104 (110)
..+. ||+.. +++++-+.++-..+++..
T Consensus 177 ~~~~--~~~~~-~~l~~l~~~e~~~~~~~~ 203 (234)
T PF01637_consen 177 SPLF--GRFSH-IELKPLSKEEAREFLKEL 203 (234)
T ss_dssp STTT--T---E-EEE----HHHHHHHHHHH
T ss_pred Cccc--cccce-EEEeeCCHHHHHHHHHHH
Confidence 3344 48877 999888877766666554
No 161
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.84 E-value=0.0074 Score=42.49 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=46.6
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC-----C-----------CCCEEEEEecCCCCCCCccc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-----A-----------KKNVFIIGATNRPDIIDPAI 77 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~-----------~~~v~vi~ttn~~~~ld~al 77 (110)
...|+|||||+.+- +..-..|+..|++.. + -.+.-+||+|++...+.+.+
T Consensus 101 ~~~ILFIDEIHRln--------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pL 166 (233)
T PF05496_consen 101 EGDILFIDEIHRLN--------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPL 166 (233)
T ss_dssp TT-EEEECTCCC----------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCC
T ss_pred CCcEEEEechhhcc--------------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhH
Confidence 46899999999772 222234556665421 1 13588999999999999999
Q ss_pred cCCCccceEEEecCCCHHHHHHHHH
Q psy13774 78 LRPGRLDQLIYIPLPDEIWLILSDK 102 (110)
Q Consensus 78 ~r~grfd~~i~~~~P~~~~R~~~~~ 102 (110)
+. ||.....+..-+.++=..|.+
T Consensus 167 rd--RFgi~~~l~~Y~~~el~~Iv~ 189 (233)
T PF05496_consen 167 RD--RFGIVLRLEFYSEEELAKIVK 189 (233)
T ss_dssp CT--TSSEEEE----THHHHHHHHH
T ss_pred Hh--hcceecchhcCCHHHHHHHHH
Confidence 99 999988888878777666554
No 162
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.77 E-value=0.0078 Score=48.75 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=49.3
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCC--CCCCCccccCCCccceEEEecC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR--PDIIDPAILRPGRLDQLIYIPL 91 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~--~~~ld~al~r~grfd~~i~~~~ 91 (110)
...++||||+|.+... ....|+..++ ...+++|++|+. ...+++++++ |. ..+.+++
T Consensus 109 ~~~IL~IDEIh~Ln~~--------------qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~p 167 (725)
T PRK13341 109 KRTILFIDEVHRFNKA--------------QQDALLPWVE----NGTITLIGATTENPYFEVNKALVS--RS-RLFRLKS 167 (725)
T ss_pred CceEEEEeChhhCCHH--------------HHHHHHHHhc----CceEEEEEecCCChHhhhhhHhhc--cc-cceecCC
Confidence 4579999999987311 1123444443 345677776543 3578999998 75 5699999
Q ss_pred CCHHHHHHHHHHHhh
Q psy13774 92 PDEIWLILSDKFLYK 106 (110)
Q Consensus 92 P~~~~R~~~~~~~~~ 106 (110)
++.++...+++..+.
T Consensus 168 Ls~edi~~IL~~~l~ 182 (725)
T PRK13341 168 LSDEDLHQLLKRALQ 182 (725)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999998887776654
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.75 E-value=0.0074 Score=49.69 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=53.2
Q ss_pred hcCC-eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC--C-------CCCCEEEEEecCCC-----------
Q psy13774 12 AAAP-CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM--G-------AKKNVFIIGATNRP----------- 70 (110)
Q Consensus 12 ~~~P-~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~--~-------~~~~v~vi~ttn~~----------- 70 (110)
...| ++|+|||+|.+- ..+.+.|++.++.- . ...+.++|+|||..
T Consensus 667 ~~~p~~vLllDEieka~--------------~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~ 732 (857)
T PRK10865 667 RRRPYSVILLDEVEKAH--------------PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGEL 732 (857)
T ss_pred HhCCCCeEEEeehhhCC--------------HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhcccc
Confidence 3344 899999998652 23455566666431 1 12357889999973
Q ss_pred --------------CCCCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 71 --------------DIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 71 --------------~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
..+.|+++. |+|..+.+.+++.+.-..|.+.++
T Consensus 733 ~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 733 DYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred chHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHH
Confidence 134578888 999999999999888666666554
No 164
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.0041 Score=45.76 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=52.4
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
.-|++||++|.+- ....+.+++.++... .++.+|.+|++++.+.+++.+ |+ ..+.|++|+.
T Consensus 114 ~kV~iiEp~~~Ld--------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~ 174 (325)
T PRK08699 114 LRVILIHPAESMN--------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSH 174 (325)
T ss_pred ceEEEEechhhCC--------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCH
Confidence 3589999999772 234556777777753 446677899999999999998 87 6788999998
Q ss_pred HHHHHHHH
Q psy13774 95 IWLILSDK 102 (110)
Q Consensus 95 ~~R~~~~~ 102 (110)
++-..++.
T Consensus 175 ~~~~~~L~ 182 (325)
T PRK08699 175 EEALAYLR 182 (325)
T ss_pred HHHHHHHH
Confidence 87666554
No 165
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.0097 Score=43.39 Aligned_cols=68 Identities=16% Similarity=0.368 Sum_probs=50.5
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
.-|++||++|.+ .....+.|++.++. ....+++|.+|+.++.+-|++++ |. ..+++.+|+.
T Consensus 91 ~KvvII~~~e~m--------------~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKT--------------SNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQ 151 (299)
T ss_pred ceEEEEeccccc--------------CHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCH
Confidence 357777776644 23456678999988 56677888888899999999998 76 5699999887
Q ss_pred HHHHHHH
Q psy13774 95 IWLILSD 101 (110)
Q Consensus 95 ~~R~~~~ 101 (110)
++-..++
T Consensus 152 ~~l~~~l 158 (299)
T PRK07132 152 QKILAKL 158 (299)
T ss_pred HHHHHHH
Confidence 7655444
No 166
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.65 E-value=0.0072 Score=47.72 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=52.4
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
..||+|||+|.+. ....+.|+..++.. ...+++|.+|+.++.+.+.+++ |+ ..++|..++.
T Consensus 121 ~kVvIIDEa~~L~--------------~~a~naLLk~LEep--p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~ 181 (585)
T PRK14950 121 YKVYIIDEVHMLS--------------TAAFNALLKTLEEP--PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSV 181 (585)
T ss_pred eEEEEEeChHhCC--------------HHHHHHHHHHHhcC--CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCH
Confidence 4599999999773 23456788888774 3567777778888889999988 77 4688988888
Q ss_pred HHHHHHHHHH
Q psy13774 95 IWLILSDKFL 104 (110)
Q Consensus 95 ~~R~~~~~~~ 104 (110)
.+-..+++..
T Consensus 182 ~el~~~L~~~ 191 (585)
T PRK14950 182 ADMAAHLRKI 191 (585)
T ss_pred HHHHHHHHHH
Confidence 7766555544
No 167
>KOG0741|consensus
Probab=96.63 E-value=0.0049 Score=48.39 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=64.0
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCC-CCEEEEEecCCCCCCCc-cccC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAK-KNVFIIGATNRPDIIDP-AILR 79 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~-~~v~vi~ttn~~~~ld~-al~r 79 (110)
-|..+|+-|.+..-+||++|++|.|..--.= ...-++.++..|+-.+...... .+.+|++||++.+-+.. .+..
T Consensus 586 ~i~k~F~DAYkS~lsiivvDdiErLiD~vpI----GPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~ 661 (744)
T KOG0741|consen 586 HIKKIFEDAYKSPLSIIVVDDIERLLDYVPI----GPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD 661 (744)
T ss_pred HHHHHHHHhhcCcceEEEEcchhhhhccccc----CchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH
Confidence 3788999999999999999999998743211 1114566777888888776554 47889999988765553 3555
Q ss_pred CCccceEEEecCCCH
Q psy13774 80 PGRLDQLIYIPLPDE 94 (110)
Q Consensus 80 ~grfd~~i~~~~P~~ 94 (110)
.|+..|++|.-..
T Consensus 662 --~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 662 --CFSSTIHVPNLTT 674 (744)
T ss_pred --hhhheeecCccCc
Confidence 8999999987665
No 168
>PHA02244 ATPase-like protein
Probab=96.62 E-value=0.014 Score=43.90 Aligned_cols=70 Identities=27% Similarity=0.307 Sum_probs=45.1
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHH-----hhhc-CCCCCCEEEEEecCCC-----------CCCCcc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILT-----EMDG-MGAKKNVFIIGATNRP-----------DIIDPA 76 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~-----~ld~-~~~~~~v~vi~ttn~~-----------~~ld~a 76 (110)
.+.+++|||++.+.+. ....++.++. ..++ +....++-+|+|+|.+ ..+++|
T Consensus 180 ~GgvLiLDEId~a~p~-----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~A 248 (383)
T PHA02244 180 KGGLFFIDEIDASIPE-----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGA 248 (383)
T ss_pred cCCEEEEeCcCcCCHH-----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHH
Confidence 5689999999966321 1122222221 1111 1123578999999973 688999
Q ss_pred ccCCCccceEEEecCCCHHHH
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWL 97 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R 97 (110)
++. || ..|+++.|...+.
T Consensus 249 llD--RF-v~I~~dyp~~~E~ 266 (383)
T PHA02244 249 TLD--RF-APIEFDYDEKIEH 266 (383)
T ss_pred HHh--hc-EEeeCCCCcHHHH
Confidence 999 99 5699999984443
No 169
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.45 E-value=0.0062 Score=41.33 Aligned_cols=68 Identities=18% Similarity=0.071 Sum_probs=42.7
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 92 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P 92 (110)
..++|+|||+..+++++...... . ...+..+..- ...+.-++.+|.++..||+.++. ..+..+++..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~----~----~~~~~~l~~h-Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKK----V----PEIIEFLAQH-RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T------------HHHHGGGGC-CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCcccccc----c----hHHHHHHHHh-CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 57999999999999988653211 1 1233444332 45678899999999999999987 99998888655
No 170
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.41 E-value=0.063 Score=38.25 Aligned_cols=91 Identities=16% Similarity=0.256 Sum_probs=61.4
Q ss_pred HHHHHHHHH-hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC--CCCCCEEEEEecCCCCCCCccccC
Q psy13774 3 IATGASMAR-AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM--GAKKNVFIIGATNRPDIIDPAILR 79 (110)
Q Consensus 3 l~~~F~~A~-~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~--~~~~~v~vi~ttn~~~~ld~al~r 79 (110)
|.+++...+ ...+-|||+||+- |... ..--..|.+.|+|- ....+|++.+|||+-..++..+..
T Consensus 94 l~~l~~~l~~~~~kFIlf~DDLs--Fe~~-----------d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d 160 (249)
T PF05673_consen 94 LPELLDLLRDRPYKFILFCDDLS--FEEG-----------DTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSD 160 (249)
T ss_pred HHHHHHHHhcCCCCEEEEecCCC--CCCC-----------cHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhh
Confidence 455666655 3456899999854 2111 11224566666653 235699999999987766654332
Q ss_pred ---------------------CCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 80 ---------------------PGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 80 ---------------------~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
..||...|.|..||.++=..|.+.+.+
T Consensus 161 ~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 161 REDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred ccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHH
Confidence 138999999999999998888777764
No 171
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.015 Score=46.22 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=51.6
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCHH
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
-|++|||+|.+. ....+.|+..|+.. ....++|.+|+.+..|-+++++ |+ ..++|..++.+
T Consensus 123 KVvIIdea~~Ls--------------~~a~naLLK~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ 183 (614)
T PRK14971 123 KIYIIDEVHMLS--------------QAAFNAFLKTLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVA 183 (614)
T ss_pred EEEEEECcccCC--------------HHHHHHHHHHHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHH
Confidence 399999999772 23466788888873 4566777777788999999999 87 55999988877
Q ss_pred HHHHHHHH
Q psy13774 96 WLILSDKF 103 (110)
Q Consensus 96 ~R~~~~~~ 103 (110)
+=..+++.
T Consensus 184 ei~~~L~~ 191 (614)
T PRK14971 184 DIVNHLQY 191 (614)
T ss_pred HHHHHHHH
Confidence 76555544
No 172
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.028 Score=42.10 Aligned_cols=79 Identities=23% Similarity=0.278 Sum_probs=58.4
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC---CCCCccccCCCcc-ceEEE
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP---DIIDPAILRPGRL-DQLIY 88 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~---~~ld~al~r~grf-d~~i~ 88 (110)
....||.+||+|.|..+.. .++-+|....+.. ..++.+|+.+|.. +.+||.+.+ +| ..+|.
T Consensus 122 ~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~ 186 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIV 186 (366)
T ss_pred CCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceee
Confidence 4568999999999975442 3555565555543 5689999999987 488998887 66 34588
Q ss_pred ecCCCHHHHHHHHHHHhh
Q psy13774 89 IPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 89 ~~~P~~~~R~~~~~~~~~ 106 (110)
|++=+.+|-..|++.-.+
T Consensus 187 F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 187 FPPYTAEELYDILRERVE 204 (366)
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 888888887777766544
No 173
>PF12846 AAA_10: AAA-like domain
Probab=96.27 E-value=0.013 Score=41.41 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=55.5
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC-----ccccCCCccceE
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID-----PAILRPGRLDQL 86 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld-----~al~r~grfd~~ 86 (110)
...|+++++||+..+.... .....+..++... ...++.++.+|..+.+++ ++++. -+...
T Consensus 218 ~~~~~~i~iDEa~~~~~~~---------~~~~~~~~~~~~~----Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~--n~~~~ 282 (304)
T PF12846_consen 218 RGRPKIIVIDEAHNFLSNP---------SGAEFLDELLREG----RKYGVGLILATQSPSDLPKSPIEDAILA--NCNTK 282 (304)
T ss_pred CCceEEEEeCCcccccccc---------chhhhhhHHHHHH----HhcCCEEEEeeCCHHHHhccchHHHHHH--hCCcE
Confidence 3678999999999887553 1222333444433 345778999999999999 78888 88899
Q ss_pred EEecCCCHHHHHHHHH
Q psy13774 87 IYIPLPDEIWLILSDK 102 (110)
Q Consensus 87 i~~~~P~~~~R~~~~~ 102 (110)
|.+..++.+.+. +.+
T Consensus 283 i~~~~~~~~~~~-l~~ 297 (304)
T PF12846_consen 283 IIFRLEDSDDAE-LAE 297 (304)
T ss_pred EEecCChHHHHH-HHH
Confidence 999999988776 444
No 174
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.26 E-value=0.0097 Score=42.63 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=47.2
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCC
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 92 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P 92 (110)
--|++|+++|.+. ....+.||+.+++ ...++++|..|+.++.+.|.+++ |.- .+.++.+
T Consensus 89 ~KV~II~~ae~m~--------------~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 89 KKIYIIYGIEKLN--------------KQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred CEEEEeccHhhhC--------------HHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecCCh
Confidence 3688888888762 3466789999988 67899999999999999999999 873 4566555
No 175
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.013 Score=42.55 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=46.7
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCC
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 92 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P 92 (110)
-|++||++|.+. ...-+.||+.+++ ...++++|..|+.++.+.|.+++ |+ ..+.|+++
T Consensus 97 kv~ii~~ad~mt--------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT--------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcC--------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 588999999772 3456778888888 57789999999999999999999 87 45666654
No 176
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.21 E-value=0.018 Score=43.78 Aligned_cols=77 Identities=12% Similarity=0.228 Sum_probs=53.2
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC---ccccCCCccc--eEEE
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID---PAILRPGRLD--QLIY 88 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld---~al~r~grfd--~~i~ 88 (110)
+-.+++|||++.+..+.. .. .+|-..++.+...++-+++.+-..|..+. |.|++ ||+ ..++
T Consensus 175 ~~dlllIDDiq~l~gk~~--------~q----eefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~ 240 (408)
T COG0593 175 SLDLLLIDDIQFLAGKER--------TQ----EEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVE 240 (408)
T ss_pred ccCeeeechHhHhcCChh--------HH----HHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEe
Confidence 446999999998864432 12 23444444444455567777777776554 88999 996 4778
Q ss_pred ecCCCHHHHHHHHHHH
Q psy13774 89 IPLPDEIWLILSDKFL 104 (110)
Q Consensus 89 ~~~P~~~~R~~~~~~~ 104 (110)
+.+||.+.|..+++..
T Consensus 241 I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 241 IEPPDDETRLAILRKK 256 (408)
T ss_pred eCCCCHHHHHHHHHHH
Confidence 8999999999887763
No 177
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.18 E-value=0.025 Score=45.18 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=49.9
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-----------CCCCCEEEEEecCCC-CCCCccccCCCcc
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-----------GAKKNVFIIGATNRP-DIIDPAILRPGRL 83 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----------~~~~~v~vi~ttn~~-~~ld~al~r~grf 83 (110)
.|+||||++.+- ..+.+.|+..|+.- .-..++.+|+|+|-. ..+.++++. ||
T Consensus 128 GiL~lDEi~~l~--------------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~ 191 (633)
T TIGR02442 128 GILYIDEVNLLD--------------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RF 191 (633)
T ss_pred CeEEeChhhhCC--------------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hc
Confidence 599999999772 23444555555421 112468999998843 368899999 99
Q ss_pred ceEEEecCCC-HHHHHHHHHH
Q psy13774 84 DQLIYIPLPD-EIWLILSDKF 103 (110)
Q Consensus 84 d~~i~~~~P~-~~~R~~~~~~ 103 (110)
+..|.++.|. .++|.++++.
T Consensus 192 ~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 192 GLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ceEEEccCCCchHHHHHHHHH
Confidence 9999998775 5666666543
No 178
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.021 Score=45.55 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=52.0
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
.-|++|||+|.+. ....+.|+..++.. ...+++|.+|+.+..|.+++++ |. ..++|..++.
T Consensus 128 ~KVvIIdEad~Lt--------------~~a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~ 188 (620)
T PRK14954 128 YRVYIIDEVHMLS--------------TAAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPL 188 (620)
T ss_pred CEEEEEeChhhcC--------------HHHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCH
Confidence 3599999998773 12356788888873 3456677777888999999998 76 6799999988
Q ss_pred HHHHHHHHHH
Q psy13774 95 IWLILSDKFL 104 (110)
Q Consensus 95 ~~R~~~~~~~ 104 (110)
++=..+++..
T Consensus 189 ~ei~~~L~~i 198 (620)
T PRK14954 189 DEIQSQLQMI 198 (620)
T ss_pred HHHHHHHHHH
Confidence 7755555443
No 179
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.012 Score=43.73 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=34.5
Q ss_pred HHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC
Q psy13774 7 ASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM 55 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~ 55 (110)
|..+++.. .||||||||.+..+..+.+-..+...+.+-..||..+.+.
T Consensus 156 ydV~rAer-GIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 156 YDVERAER-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cCHHHHhC-CeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 44455544 7999999999998776555444445566777889988874
No 180
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.05 E-value=0.022 Score=44.44 Aligned_cols=64 Identities=25% Similarity=0.379 Sum_probs=44.9
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-------C----CCCCEEEEEecCCCC-------------
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-------G----AKKNVFIIGATNRPD------------- 71 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-------~----~~~~v~vi~ttn~~~------------- 71 (110)
.++|+||++.+- ..+...|+.-|+.- . -..++.+|+|+|...
T Consensus 296 GvLfLDEi~e~~--------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~ 361 (506)
T PRK09862 296 GVLFLDELPEFE--------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTP 361 (506)
T ss_pred CEEecCCchhCC--------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCH
Confidence 699999998651 23445555555321 0 134789999999752
Q ss_pred --------CCCccccCCCccceEEEecCCCHH
Q psy13774 72 --------IIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 72 --------~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
.+...++. |||..+.++.|+.+
T Consensus 362 ~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 362 EQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 47778998 99999999998644
No 181
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.04 E-value=0.0085 Score=40.17 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=36.0
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-----C----CCCCEEEEEecCCCCC
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-----G----AKKNVFIIGATNRPDI 72 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~----~~~~v~vi~ttn~~~~ 72 (110)
.|||+||||...+..+. ..+.....+.+.||+.+++- . ...++++|+|+|--..
T Consensus 70 gVVllDEidKa~~~~~~---~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 70 GVVLLDEIDKAHPSNSG---GADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp TEEEEETGGGCSHTTTT---CSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred hhhhhHHHhhccccccc---cchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 39999999999876211 11123346777888888742 1 1257999999997543
No 182
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=96.01 E-value=0.042 Score=41.84 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=53.7
Q ss_pred HHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc---------CC--CCCCEEEEEecCCC-CCCCcc
Q psy13774 9 MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG---------MG--AKKNVFIIGATNRP-DIIDPA 76 (110)
Q Consensus 9 ~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~---------~~--~~~~v~vi~ttn~~-~~ld~a 76 (110)
.|++|. .|+||||+-.| ..++...||.-+.. ++ -..++++|||+|-- ..|-|-
T Consensus 140 La~AnR-GIlYvDEvnlL--------------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpq 204 (423)
T COG1239 140 LARANR-GILYVDEVNLL--------------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQ 204 (423)
T ss_pred hhhccC-CEEEEeccccc--------------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchh
Confidence 356665 69999999866 23455555544432 22 13479999999965 478888
Q ss_pred ccCCCccceEEEecCCC-HHHHHHHHH
Q psy13774 77 ILRPGRLDQLIYIPLPD-EIWLILSDK 102 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~-~~~R~~~~~ 102 (110)
|+. ||...|.+..|. .++|..+.+
T Consensus 205 LlD--Rfg~~v~~~~~~~~~~rv~Ii~ 229 (423)
T COG1239 205 LLD--RFGLEVDTHYPLDLEERVEIIR 229 (423)
T ss_pred hHh--hhcceeeccCCCCHHHHHHHHH
Confidence 998 999999997776 666776543
No 183
>PF05729 NACHT: NACHT domain
Probab=95.84 E-value=0.059 Score=34.57 Aligned_cols=89 Identities=9% Similarity=0.118 Sum_probs=48.6
Q ss_pred HHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc-CCCCCCEEEEEecCCCCCCCccccCCCccceEE
Q psy13774 9 MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG-MGAKKNVFIIGATNRPDIIDPAILRPGRLDQLI 87 (110)
Q Consensus 9 ~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i 87 (110)
.+....+.+++||.+|.+...... . ........+...+.. .....++++.+.+.....+...+.. ...+
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~---~---~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~----~~~~ 145 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQS---Q---ERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ----AQIL 145 (166)
T ss_pred HHHcCCceEEEEechHhcccchhh---h---HHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC----CcEE
Confidence 345567789999999999754322 0 122222233333433 2122333333333322233333332 1578
Q ss_pred EecCCCHHHHHHHHHHHhhc
Q psy13774 88 YIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 88 ~~~~P~~~~R~~~~~~~~~~ 107 (110)
.+..-+.++...+++.+++.
T Consensus 146 ~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 146 ELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EECCCCHHHHHHHHHHHhhc
Confidence 99888999998888777653
No 184
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.80 E-value=0.014 Score=43.88 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=49.0
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCHH
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
.|++|||+|.+.. ...+.|+..++. .....++|.+|+.+..+-+++.+ |+. .+++.+++.+
T Consensus 129 kvvIIdea~~l~~--------------~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ 189 (397)
T PRK14955 129 RVYIIDEVHMLSI--------------AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLE 189 (397)
T ss_pred EEEEEeChhhCCH--------------HHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHH
Confidence 5999999997731 234567777775 34456666677778899999998 774 6899888877
Q ss_pred HHHHHHHHH
Q psy13774 96 WLILSDKFL 104 (110)
Q Consensus 96 ~R~~~~~~~ 104 (110)
+=..+++..
T Consensus 190 ei~~~l~~~ 198 (397)
T PRK14955 190 EIQQQLQGI 198 (397)
T ss_pred HHHHHHHHH
Confidence 655444443
No 185
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=95.79 E-value=0.11 Score=36.05 Aligned_cols=70 Identities=19% Similarity=0.082 Sum_probs=53.1
Q ss_pred EEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccce-----------
Q psy13774 17 VLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQ----------- 85 (110)
Q Consensus 17 ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~----------- 85 (110)
-++|+++|.+ .....+.||+.+.. +..++++|..|+.+..+.|.+++ |+-.
T Consensus 57 k~iI~~a~~l--------------~~~A~NaLLK~LEE--Pp~~~~fiL~t~~~~~llpTI~S--Rc~~~~~~~~~~~~~ 118 (206)
T PRK08485 57 KIIVIAAPSY--------------GIEAQNALLKILEE--PPKNICFIIVAKSKNLLLPTIRS--RLIIEKRKQKKPVKP 118 (206)
T ss_pred EEEEEchHhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEeCChHhCchHHHh--hheeccccccccccc
Confidence 3457788766 24466788988888 67789999999999999999999 8753
Q ss_pred -EEEecCCCHHHHHHHHHHH
Q psy13774 86 -LIYIPLPDEIWLILSDKFL 104 (110)
Q Consensus 86 -~i~~~~P~~~~R~~~~~~~ 104 (110)
.+.+...+.++-..+++.+
T Consensus 119 l~l~l~~l~~~~i~~~L~~~ 138 (206)
T PRK08485 119 LDLDLKKLDLKDIYEFLKEL 138 (206)
T ss_pred cccccCCCCHHHHHHHHHHH
Confidence 4667777777776666554
No 186
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.045 Score=44.72 Aligned_cols=80 Identities=24% Similarity=0.271 Sum_probs=58.0
Q ss_pred HHhcC-CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC--C-C------CCCEEEEEecCCCC--------
Q psy13774 10 ARAAA-PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM--G-A------KKNVFIIGATNRPD-------- 71 (110)
Q Consensus 10 A~~~~-P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~--~-~------~~~v~vi~ttn~~~-------- 71 (110)
|-+.. .|||++||||. .+..+++.||+-||.= . + -.+.++|+|||--.
T Consensus 588 aVRr~PySViLlDEIEK--------------AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~ 653 (786)
T COG0542 588 AVRRKPYSVILLDEIEK--------------AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDAD 653 (786)
T ss_pred hhhcCCCeEEEechhhh--------------cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhcc
Confidence 44444 59999999993 3567889999998852 1 1 13688999988531
Q ss_pred --------------------CCCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 72 --------------------IIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 72 --------------------~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
...|+++. |+|..|.|.+.+.+.-..|....+
T Consensus 654 ~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 654 GDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred ccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 23466777 999999999999888777666554
No 187
>KOG0989|consensus
Probab=95.52 E-value=0.054 Score=39.93 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=45.8
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEe-cCCCH
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI-PLPDE 94 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~-~~P~~ 94 (110)
-||++||+|.+. ...-+.|..-|+.+ ...+.++..||+.+.|.+-+.+ |..+ +.| ++++.
T Consensus 131 KiiIlDEcdsmt--------------sdaq~aLrr~mE~~--s~~trFiLIcnylsrii~pi~S--RC~K-frFk~L~d~ 191 (346)
T KOG0989|consen 131 KIIILDECDSMT--------------SDAQAALRRTMEDF--SRTTRFILICNYLSRIIRPLVS--RCQK-FRFKKLKDE 191 (346)
T ss_pred eEEEEechhhhh--------------HHHHHHHHHHHhcc--ccceEEEEEcCChhhCChHHHh--hHHH-hcCCCcchH
Confidence 699999999884 22334677777773 5577888899999999999999 9865 555 44554
Q ss_pred HH
Q psy13774 95 IW 96 (110)
Q Consensus 95 ~~ 96 (110)
..
T Consensus 192 ~i 193 (346)
T KOG0989|consen 192 DI 193 (346)
T ss_pred HH
Confidence 43
No 188
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=95.07 E-value=0.08 Score=39.03 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=42.4
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc----CCC-------CCCEEEEEecCCCC------------
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG----MGA-------KKNVFIIGATNRPD------------ 71 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~----~~~-------~~~v~vi~ttn~~~------------ 71 (110)
..|++|||+|.+-. .....+..-|++ +.. ..+.-|+|++|-..
T Consensus 122 ~GiccIDe~dk~~~--------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~n 187 (331)
T PF00493_consen 122 GGICCIDEFDKMKE--------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSEN 187 (331)
T ss_dssp TSEEEECTTTT--C--------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCC
T ss_pred Cceeeecccccccc--------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHh
Confidence 47999999997621 123344444543 111 34678899998766
Q ss_pred -CCCccccCCCccceEEEe-cCCCHHHHHHHHHHHhh
Q psy13774 72 -IIDPAILRPGRLDQLIYI-PLPDEIWLILSDKFLYK 106 (110)
Q Consensus 72 -~ld~al~r~grfd~~i~~-~~P~~~~R~~~~~~~~~ 106 (110)
.+++.+++ |||-.+.+ +.||.+.=..+.++.++
T Consensus 188 i~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 188 INLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp T-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred cccchhhHh--hcCEEEEeccccccccccccceEEEe
Confidence 58999999 99988775 77776665556555543
No 189
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.95 E-value=0.43 Score=34.29 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=57.6
Q ss_pred HHHHHHHh-cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-C-CCCCEEEEEecCCCCCCCcccc---
Q psy13774 5 TGASMARA-AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-G-AKKNVFIIGATNRPDIIDPAIL--- 78 (110)
Q Consensus 5 ~~F~~A~~-~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-~-~~~~v~vi~ttn~~~~ld~al~--- 78 (110)
.+++..+. ...-|||+||+- + .. .......|...++|- . ...+|++-+|+|+-..++..+.
T Consensus 129 ~l~~~Lr~~~~kFIlFcDDLS--F-------e~----gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~ 195 (287)
T COG2607 129 DLVELLRARPEKFILFCDDLS--F-------EE----GDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNE 195 (287)
T ss_pred HHHHHHhcCCceEEEEecCCC--C-------CC----CchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCC
Confidence 45555554 346899999864 1 11 111223444555552 2 3569999999999877774332
Q ss_pred -----------------CCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 79 -----------------RPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 79 -----------------r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
=+.||...+.|.+++.++=..+...|.+
T Consensus 196 ~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~ 240 (287)
T COG2607 196 GSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAK 240 (287)
T ss_pred CcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHH
Confidence 1348999999999999888777776664
No 190
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.94 E-value=0.095 Score=39.58 Aligned_cols=69 Identities=28% Similarity=0.287 Sum_probs=36.5
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecC------------CCCCCCccccCCCc
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN------------RPDIIDPAILRPGR 82 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn------------~~~~ld~al~r~gr 82 (110)
|.|+||||++-| .. ..++-|-..++. .---++|.+|| .|..+|..|+. |
T Consensus 279 pGVLFIDEvHmL-------------Di-EcFsfLnralEs---~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML-------------DI-ECFSFLNRALES---ELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS-------------BH-HHHHHHHHHHTS---TT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc-------------cH-HHHHHHHHHhcC---CCCcEEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 899999999976 12 233333333432 22235666666 45677888887 7
Q ss_pred cceEEEecCCCHHHHHHHHHH
Q psy13774 83 LDQLIYIPLPDEIWLILSDKF 103 (110)
Q Consensus 83 fd~~i~~~~P~~~~R~~~~~~ 103 (110)
+ ..|...+.+.++-..|++.
T Consensus 340 l-lII~t~py~~~ei~~Il~i 359 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKI 359 (398)
T ss_dssp E-EEEEE----HHHHHHHHHH
T ss_pred c-EEEECCCCCHHHHHHHHHh
Confidence 6 5666667777665555543
No 191
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.91 E-value=0.11 Score=40.38 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=42.0
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC--------CCCCEEEEEecCCCCC---CCccccCCCccc
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG--------AKKNVFIIGATNRPDI---IDPAILRPGRLD 84 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi~ttn~~~~---ld~al~r~grfd 84 (110)
.++|+|||..+ .....+.|+..|+.-. .-...++++|||.... ..+|+.- ||-
T Consensus 109 ~lLfLDEI~ra--------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFl 172 (498)
T PRK13531 109 EIVFLDEIWKA--------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RML 172 (498)
T ss_pred cEEeecccccC--------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEE
Confidence 48999999632 3456667777774311 1122455555563321 2248888 998
Q ss_pred eEEEecCCCH-HHHHHHH
Q psy13774 85 QLIYIPLPDE-IWLILSD 101 (110)
Q Consensus 85 ~~i~~~~P~~-~~R~~~~ 101 (110)
..+.+|+|+. +.-..++
T Consensus 173 iri~vp~l~~~~~e~~lL 190 (498)
T PRK13531 173 IRLWLDKVQDKANFRSML 190 (498)
T ss_pred EEEECCCCCchHHHHHHH
Confidence 8999999973 4433333
No 192
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=94.87 E-value=0.091 Score=40.96 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=44.1
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC-----------CCCCEEEEEecCCC-----C-------
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-----------AKKNVFIIGATNRP-----D------- 71 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~ttn~~-----~------- 71 (110)
..++||||++.+- ......|...|+.-. -..++.+|++||.- .
T Consensus 296 ~GvLfLDEi~e~~--------------~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~ 361 (499)
T TIGR00368 296 NGVLFLDELPEFK--------------RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCR 361 (499)
T ss_pred CCeEecCChhhCC--------------HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCccccc
Confidence 3799999999762 233444444443210 12478899999852 1
Q ss_pred -----------CCCccccCCCccceEEEecCCCHH
Q psy13774 72 -----------IIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 72 -----------~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
.+...++. |||..+.++.++..
T Consensus 362 c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 362 CSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred CCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 58888998 99999999877543
No 193
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.67 E-value=0.21 Score=37.84 Aligned_cols=70 Identities=26% Similarity=0.284 Sum_probs=38.4
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCC------------CCCCCccccCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR------------PDIIDPAILRPG 81 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~------------~~~ld~al~r~g 81 (110)
=|.|+||||++-| ..+ .++-|-..|.. .-.+ ++|.+||+ |..||..|+.
T Consensus 291 VpGVLFIDEvHmL-------------DIE-~FsFlnrAlEs--e~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD-- 351 (450)
T COG1224 291 VPGVLFIDEVHML-------------DIE-CFSFLNRALES--ELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLD-- 351 (450)
T ss_pred ecceEEEechhhh-------------hHH-HHHHHHHHhhc--ccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhh--
Confidence 3899999999966 121 22222223322 1123 55556664 5677777776
Q ss_pred ccceEEEecCCCHHHHHHHHHH
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKF 103 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~ 103 (110)
|+ ..|...+-+.++-++|++.
T Consensus 352 Rl-lII~t~py~~~EireIi~i 372 (450)
T COG1224 352 RL-LIISTRPYSREEIREIIRI 372 (450)
T ss_pred he-eEEecCCCCHHHHHHHHHH
Confidence 65 3444444455555555543
No 194
>KOG0745|consensus
Probab=94.52 E-value=0.091 Score=40.60 Aligned_cols=84 Identities=24% Similarity=0.351 Sum_probs=51.0
Q ss_pred HHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC------C-----C--------CCEEEEEec
Q psy13774 7 ASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG------A-----K--------KNVFIIGAT 67 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~------~-----~--------~~v~vi~tt 67 (110)
|+.+++++ .||||||+|.+..+-.+-....+...+.+-..||+.+.+.- . . .++++| ++
T Consensus 285 ~nVekAQq-GIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFi-as 362 (564)
T KOG0745|consen 285 YNVEKAQQ-GIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFI-AS 362 (564)
T ss_pred CCHHHHhc-CeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEE-ec
Confidence 44555554 79999999999865544332223344556677888887630 0 1 123333 33
Q ss_pred CCCCCCCccccCCCcc-ceEEEecCCCH
Q psy13774 68 NRPDIIDPAILRPGRL-DQLIYIPLPDE 94 (110)
Q Consensus 68 n~~~~ld~al~r~grf-d~~i~~~~P~~ 94 (110)
-....||.-+-| |. |..+-|+.|+.
T Consensus 363 GAF~~Ldk~I~r--R~~d~slGFg~~s~ 388 (564)
T KOG0745|consen 363 GAFVGLDKIISR--RLDDKSLGFGAPSS 388 (564)
T ss_pred ccccchHHHHHH--hhcchhcccCCCCC
Confidence 445678877776 65 56778888844
No 195
>KOG2028|consensus
Probab=94.25 E-value=0.14 Score=39.07 Aligned_cols=73 Identities=22% Similarity=0.320 Sum_probs=46.2
Q ss_pred HHHHHHHHHhc-----CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecC-CC-CCCCc
Q psy13774 3 IATGASMARAA-----APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN-RP-DIIDP 75 (110)
Q Consensus 3 l~~~F~~A~~~-----~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn-~~-~~ld~ 75 (110)
++++|+.|+.. ..+|+|||||+.+...... .||-. + +.+.+.+||+|. +| -.+..
T Consensus 206 vR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD--------------~fLP~---V-E~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 206 VRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD--------------TFLPH---V-ENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred HHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh--------------cccce---e-ccCceEEEecccCCCccchhH
Confidence 67899998853 3689999999987422211 13222 2 456778887764 44 47889
Q ss_pred cccCCCccceEEEecCCCHHH
Q psy13774 76 AILRPGRLDQLIYIPLPDEIW 96 (110)
Q Consensus 76 al~r~grfd~~i~~~~P~~~~ 96 (110)
+|++ |+ +.+.+...+...
T Consensus 268 aLlS--RC-~VfvLekL~~n~ 285 (554)
T KOG2028|consen 268 ALLS--RC-RVFVLEKLPVNA 285 (554)
T ss_pred HHHh--cc-ceeEeccCCHHH
Confidence 9999 76 334444444444
No 196
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.20 E-value=0.63 Score=32.57 Aligned_cols=28 Identities=7% Similarity=-0.218 Sum_probs=21.1
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 76 AILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 76 al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
.+.+ |+...+++++.+.++-..++...+
T Consensus 178 ~l~~--r~~~~~~l~~l~~~e~~~~l~~~l 205 (269)
T TIGR03015 178 QLRQ--RIIASCHLGPLDREETREYIEHRL 205 (269)
T ss_pred HHHh--heeeeeeCCCCCHHHHHHHHHHHH
Confidence 3555 788889999999888777666554
No 197
>KOG1514|consensus
Probab=94.08 E-value=0.22 Score=40.36 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=52.4
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccC--CCccc-eEEE
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILR--PGRLD-QLIY 88 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r--~grfd-~~i~ 88 (110)
...|+||+|||+|.|+.. .+.++..|..|-.. .+.+++||+-.|..+....-+.- .-|++ .+|.
T Consensus 506 ~~~~~VvLiDElD~Lvtr-----------~QdVlYn~fdWpt~--~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~ 572 (767)
T KOG1514|consen 506 KRSTTVVLIDELDILVTR-----------SQDVLYNIFDWPTL--KNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRIC 572 (767)
T ss_pred CCCCEEEEeccHHHHhcc-----------cHHHHHHHhcCCcC--CCCceEEEEecccccCHHHHhccchhhhccceeee
Confidence 345899999999999743 24566667666544 56788999888886544333321 01333 4677
Q ss_pred ecCCCHHHHHHHHHHHh
Q psy13774 89 IPLPDEIWLILSDKFLY 105 (110)
Q Consensus 89 ~~~P~~~~R~~~~~~~~ 105 (110)
|.+-+..|-..|...-+
T Consensus 573 F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 573 FQPYTHEQLQEIISARL 589 (767)
T ss_pred cCCCCHHHHHHHHHHhh
Confidence 77777777666655433
No 198
>KOG1942|consensus
Probab=94.08 E-value=0.33 Score=36.08 Aligned_cols=70 Identities=26% Similarity=0.369 Sum_probs=37.6
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCC-------------CCCCCcccc
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR-------------PDIIDPAIL 78 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~-------------~~~ld~al~ 78 (110)
+.-|.++||||++-| . -..++.|-..+.+ .-.+ +||.+||+ |..+++.++
T Consensus 294 ElvPGVLFIDEVhML-------------D-iEcFTyL~kalES--~iaP-ivifAsNrG~~~irGt~d~~sPhGip~dll 356 (456)
T KOG1942|consen 294 ELVPGVLFIDEVHML-------------D-IECFTYLHKALES--PIAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLL 356 (456)
T ss_pred hhcCcceEeeehhhh-------------h-hHHHHHHHHHhcC--CCCc-eEEEecCCcceeecCCcCCCCCCCCCHHHh
Confidence 445999999999965 1 1233344344433 1223 44555554 456666666
Q ss_pred CCCccceEEEecCCCHHHHHHH
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILS 100 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~ 100 (110)
. |+=-.=..+.++.+.|..|
T Consensus 357 D--Rl~Iirt~~y~~~e~r~Ii 376 (456)
T KOG1942|consen 357 D--RLLIIRTLPYDEEEIRQII 376 (456)
T ss_pred h--heeEEeeccCCHHHHHHHH
Confidence 6 6532223344555556544
No 199
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.99 E-value=0.23 Score=36.40 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=35.8
Q ss_pred CCEEEEEecCCCCCCCccccCCCccceEEEecCCCHHHHHHHHH
Q psy13774 59 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEIWLILSDK 102 (110)
Q Consensus 59 ~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~ 102 (110)
.+.-+||+|.+.-.|..-|+. ||.....+..-+.++-..|.+
T Consensus 150 ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~ 191 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVK 191 (332)
T ss_pred CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHH
Confidence 468899999999999999999 999999998888777665544
No 200
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=93.97 E-value=0.35 Score=40.33 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=30.8
Q ss_pred CCEEEEEecCCC-------------CCCCccccCCCccceEEEe-cCCCHHHHHHHHHH
Q psy13774 59 KNVFIIGATNRP-------------DIIDPAILRPGRLDQLIYI-PLPDEIWLILSDKF 103 (110)
Q Consensus 59 ~~v~vi~ttn~~-------------~~ld~al~r~grfd~~i~~-~~P~~~~R~~~~~~ 103 (110)
.++-||||+|-. -.+++++++ |||....+ +.|+.+.=..+-++
T Consensus 599 ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 599 AETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred CCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHH
Confidence 578899999974 257799999 99987544 77876654444443
No 201
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=93.46 E-value=0.25 Score=39.34 Aligned_cols=65 Identities=9% Similarity=0.012 Sum_probs=47.1
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-----------CCCCCEEEEEecCCC---CCCCccccCCC
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-----------GAKKNVFIIGATNRP---DIIDPAILRPG 81 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----------~~~~~v~vi~ttn~~---~~ld~al~r~g 81 (110)
.|+|+||+..+ ..++++.|+.-|+.= .-..++++|++-|.. ..++++++.
T Consensus 95 GvL~lDe~n~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD-- 158 (584)
T PRK13406 95 GVLVLAMAERL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD-- 158 (584)
T ss_pred CEEEecCcccC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--
Confidence 69999999866 345677777777631 112468888874322 458999999
Q ss_pred ccceEEEecCCCHHH
Q psy13774 82 RLDQLIYIPLPDEIW 96 (110)
Q Consensus 82 rfd~~i~~~~P~~~~ 96 (110)
||+..|.++.|+..+
T Consensus 159 Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 159 RLAFHLDLDGLALRD 173 (584)
T ss_pred heEEEEEcCCCChHH
Confidence 999999999888553
No 202
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.40 E-value=0.38 Score=30.43 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=35.0
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+...+....|.+++|||+..+..................+..+.... ...++.+|++++.....
T Consensus 77 ~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 77 AERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA----RKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----hcCCceEEEEEecCCcc
Confidence 45667788899999999999875432100111112223333333333 23455666666655433
No 203
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.27 E-value=0.23 Score=35.74 Aligned_cols=81 Identities=23% Similarity=0.376 Sum_probs=44.4
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhh-hc--CCC--------CCCEEEEEecCCCC---CCCccccC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEM-DG--MGA--------KKNVFIIGATNRPD---IIDPAILR 79 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~l-d~--~~~--------~~~v~vi~ttn~~~---~ld~al~r 79 (110)
..+|+||||+..-.....++ ...+ +||.++ +. +.. -.++.++||++.+. .+++.++|
T Consensus 100 k~lv~fiDDlN~p~~d~ygt--------q~~i-ElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r 170 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYGT--------QPPI-ELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR 170 (272)
T ss_dssp SEEEEEEETTT-S---TTS----------HHH-HHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT
T ss_pred cEEEEEecccCCCCCCCCCC--------cCHH-HHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh
Confidence 45799999998554433322 2222 344332 21 111 13688889887532 47788887
Q ss_pred CCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 80 PGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 80 ~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
.| ..+.++.|+.+.=..|+..++.
T Consensus 171 --~f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 171 --HF-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp --TE-EEEE----TCCHHHHHHHHHHH
T ss_pred --he-EEEEecCCChHHHHHHHHHHHh
Confidence 77 5799999998877666665554
No 204
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=93.08 E-value=0.32 Score=35.04 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=45.8
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc----------------
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP---------------- 75 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~---------------- 75 (110)
...+-||+|||+|.+-+. .. .+++..+..+-...++++|.+.+.- .+-.
T Consensus 170 ~~~~iViiIDdLDR~~~~----------~i----~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~ 234 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSPE----------EI----VELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGR 234 (325)
T ss_pred CCceEEEEEcchhcCCcH----------HH----HHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHH
Confidence 356789999999977211 12 2344444444344778888776532 2222
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHH
Q psy13774 76 AILRPGRLDQLIYIPLPDEIWLILSDKFL 104 (110)
Q Consensus 76 al~r~grfd~~i~~~~P~~~~R~~~~~~~ 104 (110)
..+. --|+..+.+|.|+..+-..++..+
T Consensus 235 ~yLe-Kiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 235 EYLE-KIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HHHH-hhcCeEEEeCCCCHHHHHHHHHHH
Confidence 2221 146788999999988766555444
No 205
>KOG2228|consensus
Probab=92.86 E-value=0.19 Score=37.66 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=45.8
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC-CCCCEEEEEecCCCCCCC---ccccCCCccceE-EEe
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-AKKNVFIIGATNRPDIID---PAILRPGRLDQL-IYI 89 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~ttn~~~~ld---~al~r~grfd~~-i~~ 89 (110)
|.|.++||+|.+++-. ++++ +-+.+|-.. ...++.+||.|.+.+.++ .-+.+ ||.++ |++
T Consensus 138 ~ViFIldEfDlf~~h~-----------rQtl--lYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m 202 (408)
T KOG2228|consen 138 KVIFILDEFDLFAPHS-----------RQTL--LYNLFDISQSARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFM 202 (408)
T ss_pred eEEEEeehhhccccch-----------hhHH--HHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeec
Confidence 4566667999886432 1111 223333321 357999999999987655 67778 99887 777
Q ss_pred cCCC-HHHHHHHHHHHh
Q psy13774 90 PLPD-EIWLILSDKFLY 105 (110)
Q Consensus 90 ~~P~-~~~R~~~~~~~~ 105 (110)
++|- .++=..+++.++
T Consensus 203 ~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 203 LPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCChHHHHHHHHHHh
Confidence 5543 333334444443
No 206
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.85 E-value=0.35 Score=38.64 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=31.7
Q ss_pred CEEEEEecCCC--CCCCccccCCCccc---eEEEec--CCC-HHHHHHHHHHHh
Q psy13774 60 NVFIIGATNRP--DIIDPAILRPGRLD---QLIYIP--LPD-EIWLILSDKFLY 105 (110)
Q Consensus 60 ~v~vi~ttn~~--~~ld~al~r~grfd---~~i~~~--~P~-~~~R~~~~~~~~ 105 (110)
++.+|+++|.. ..+||+++. ||+ .+++++ .|+ .+.|..+.+++.
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~ 319 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVA 319 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHH
Confidence 67888998864 689999999 999 666663 344 555666666543
No 207
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=92.51 E-value=0.28 Score=32.81 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=26.2
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
++++|||.|.-+.. .....++..+..... .++=||.||+.|.-||
T Consensus 259 ~illiDEpE~~LHp-------------~~q~~l~~~l~~~~~-~~~QviitTHSp~ild 303 (303)
T PF13304_consen 259 SILLIDEPENHLHP-------------SWQRKLIELLKELSK-KNIQVIITTHSPFILD 303 (303)
T ss_dssp SEEEEESSSTTSSH-------------HHHHHHHHHHHHTGG-GSSEEEEEES-GGG--
T ss_pred eEEEecCCcCCCCH-------------HHHHHHHHHHHhhCc-cCCEEEEeCccchhcC
Confidence 89999999965422 233334444444322 4556789999887654
No 208
>CHL00195 ycf46 Ycf46; Provisional
Probab=92.45 E-value=1.3 Score=34.60 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=48.9
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
|+|+++.|++.++.+. ...+.+..+...... ..+.+|+.+.+ ..+|+.+.+ +-..+.+++|+.
T Consensus 82 ~~~~vl~d~h~~~~~~---------~~~r~l~~l~~~~~~---~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~ 144 (489)
T CHL00195 82 PALFLLKDFNRFLNDI---------SISRKLRNLSRILKT---QPKTIIIIASE--LNIPKELKD---LITVLEFPLPTE 144 (489)
T ss_pred CcEEEEecchhhhcch---------HHHHHHHHHHHHHHh---CCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCH
Confidence 7899999999998211 234444445444433 44455555543 567777775 446789999999
Q ss_pred HHHHHHHHHHh
Q psy13774 95 IWLILSDKFLY 105 (110)
Q Consensus 95 ~~R~~~~~~~~ 105 (110)
++...+++.+.
T Consensus 145 ~ei~~~l~~~~ 155 (489)
T CHL00195 145 SEIKKELTRLI 155 (489)
T ss_pred HHHHHHHHHHH
Confidence 99887766554
No 209
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.02 E-value=0.27 Score=33.33 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
.+...+....|++|+||-+.+++......... ...+.+..++..+..+....++.++.+.......
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~---~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~ 153 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSDDRI---SRNRELARQLTLLLSLARKKNLAVVITNQVYTDV 153 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCCccH---HHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEec
Confidence 34445566689999999999987532111110 1222344444445555456677777765543333
No 210
>PHA00012 I assembly protein
Probab=91.46 E-value=0.28 Score=36.62 Aligned_cols=57 Identities=18% Similarity=0.070 Sum_probs=40.4
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILR 79 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r 79 (110)
.-+|+++||+...++.|..+... ... ++.++.. ....+.-++.+|.+|..+|..++.
T Consensus 81 ~gsLlVlDEaq~~fp~R~~~sk~----p~~----vie~l~~-hRh~G~DvilITQ~ps~VDs~IR~ 137 (361)
T PHA00012 81 KNGLLVLDECGTWFNSRSWNDKE----RQP----VIDWFLH-ARKLGWDIIFIIQDISIMDKQARE 137 (361)
T ss_pred CCcEEEEECcccccCCCCcCcCC----cHH----HHHHHHH-hccCCceEEEEcCCHHHHhHHHHH
Confidence 45799999999999999755422 111 2232322 245678899999999999998874
No 211
>PF13173 AAA_14: AAA domain
Probab=91.24 E-value=1 Score=28.23 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=33.1
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC--CccccCCCccceEEEecC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII--DPAILRPGRLDQLIYIPL 91 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l--d~al~r~grfd~~i~~~~ 91 (110)
.+.+|||||+..+- .....+..+. |. ..++-++.|++....+ +-+-.=+||.. .+++.+
T Consensus 61 ~~~~i~iDEiq~~~------------~~~~~lk~l~---d~---~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~P 121 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP------------DWEDALKFLV---DN---GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYP 121 (128)
T ss_pred CCcEEEEehhhhhc------------cHHHHHHHHH---Hh---ccCceEEEEccchHHHhhcccccCCCeEE-EEEECC
Confidence 67899999999661 2223333333 32 1233344444433333 22222336874 678887
Q ss_pred CCHHH
Q psy13774 92 PDEIW 96 (110)
Q Consensus 92 P~~~~ 96 (110)
.+..+
T Consensus 122 lsf~E 126 (128)
T PF13173_consen 122 LSFRE 126 (128)
T ss_pred CCHHH
Confidence 77654
No 212
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=91.23 E-value=0.42 Score=30.88 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=30.4
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC---------CCCCCEEEEEecCCCC-----CCCccccCCC
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM---------GAKKNVFIIGATNRPD-----IIDPAILRPG 81 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~---------~~~~~v~vi~ttn~~~-----~ld~al~r~g 81 (110)
.|+++|||..- .-++-+.++..|.+- .-..+.+||||-|..+ .++.|++.
T Consensus 64 ~ill~DEiNra--------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D-- 127 (131)
T PF07726_consen 64 NILLADEINRA--------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD-- 127 (131)
T ss_dssp SEEEEETGGGS---------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--
T ss_pred ceeeecccccC--------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--
Confidence 48999998743 344556677776542 1235689999999776 67777777
Q ss_pred cc
Q psy13774 82 RL 83 (110)
Q Consensus 82 rf 83 (110)
||
T Consensus 128 RF 129 (131)
T PF07726_consen 128 RF 129 (131)
T ss_dssp TS
T ss_pred cc
Confidence 76
No 213
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=91.18 E-value=0.76 Score=28.36 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEec
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGAT 67 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tt 67 (110)
.+.+........+|+|||+|.+. + ...++.+....+ ...-+++++|+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLF-S------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHH-T------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcC-C------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 34444555555699999999975 1 335555555555 223356666654
No 214
>KOG1051|consensus
Probab=90.93 E-value=0.5 Score=39.39 Aligned_cols=88 Identities=25% Similarity=0.305 Sum_probs=55.8
Q ss_pred cHHHHHHHHH-hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC-----CCCc
Q psy13774 2 RIATGASMAR-AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD-----IIDP 75 (110)
Q Consensus 2 ~l~~~F~~A~-~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~-----~ld~ 75 (110)
+++.+-+.+. .....|+||||++.+.....+. ......+-|.-.+ ..+++.+||||..-+ .-||
T Consensus 267 rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~------~~~d~~nlLkp~L----~rg~l~~IGatT~e~Y~k~iekdP 336 (898)
T KOG1051|consen 267 RLKELLKEVESGGGGVILFLGELHWLVGSGSNY------GAIDAANLLKPLL----ARGGLWCIGATTLETYRKCIEKDP 336 (898)
T ss_pred HHHHHHHHHhcCCCcEEEEecceeeeecCCCcc------hHHHHHHhhHHHH----hcCCeEEEecccHHHHHHHHhhCc
Confidence 4556666666 4456899999999998766441 1222222222222 234489999988433 4689
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHH
Q psy13774 76 AILRPGRLDQLIYIPLPDEIWLILSDK 102 (110)
Q Consensus 76 al~r~grfd~~i~~~~P~~~~R~~~~~ 102 (110)
++-| ||+. +.++.|+.+.=..++.
T Consensus 337 alEr--rw~l-~~v~~pS~~~~~~iL~ 360 (898)
T KOG1051|consen 337 ALER--RWQL-VLVPIPSVENLSLILP 360 (898)
T ss_pred chhh--Ccce-eEeccCcccchhhhhh
Confidence 9999 9965 7788888665333443
No 215
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=90.81 E-value=0.54 Score=33.09 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCcc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRL 83 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grf 83 (110)
|-+.++|-.+.|.||+-||= +. .-+......+-.++ ..+....+..+|..|+++ .+-. +.
T Consensus 150 RVAIARAL~~~P~iilADEP---------Tg-nLD~~t~~~V~~ll---~~~~~~~g~tii~VTHd~-----~lA~--~~ 209 (226)
T COG1136 150 RVAIARALINNPKIILADEP---------TG-NLDSKTAKEVLELL---RELNKERGKTIIMVTHDP-----ELAK--YA 209 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCc---------cc-cCChHHHHHHHHHH---HHHHHhcCCEEEEEcCCH-----HHHH--hC
Confidence 34567788899999999982 11 11112222333333 333334455666667754 3444 66
Q ss_pred ceEEEe
Q psy13774 84 DQLIYI 89 (110)
Q Consensus 84 d~~i~~ 89 (110)
|+.|++
T Consensus 210 dr~i~l 215 (226)
T COG1136 210 DRVIEL 215 (226)
T ss_pred CEEEEE
Confidence 777766
No 216
>KOG0732|consensus
Probab=89.75 E-value=0.43 Score=40.39 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCc
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGR 82 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~gr 82 (110)
|..+|..|+++.||||||-++|.-..... ..+...|+..++.......+..+-+-+.-+--++
T Consensus 642 iv~i~~eaR~~~psi~~ip~~d~w~~~~p----------~s~~~~~~~~l~~~~~~t~i~e~~t~~~~~~~~~------- 704 (1080)
T KOG0732|consen 642 IVHIFMEARKTTPSIVFIPNVDEWARVIP----------VSFLEEFLSSLDEKALSTPILELHTWDTSFESVN------- 704 (1080)
T ss_pred HHHHHHHHhccCCceeeccchhhhhhcCc----------chhhhcchhcchhhhhccchhhhccccccccccC-------
Confidence 56789999999999999999996543332 2234445555554433444443333222111001
Q ss_pred cceEEEecCCCHHHHHHHHHHHhhcc
Q psy13774 83 LDQLIYIPLPDEIWLILSDKFLYKRK 108 (110)
Q Consensus 83 fd~~i~~~~P~~~~R~~~~~~~~~~~ 108 (110)
...+.+..|+...+..+++..++++
T Consensus 705 -~~~~t~~~p~~~s~~~ff~r~I~~~ 729 (1080)
T KOG0732|consen 705 -KSVVTLSKPSAESTGAFFKRLIRKI 729 (1080)
T ss_pred -ccccccccchhhhhHHHHHHHHHHH
Confidence 1345677888888888888777643
No 217
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=89.58 E-value=0.65 Score=33.13 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.5
Q ss_pred CcHHHHHHHHHhcCCeEEEEcccccc
Q psy13774 1 MRIATGASMARAAAPCVLFFDELDSI 26 (110)
Q Consensus 1 ~~l~~~F~~A~~~~P~ii~iDeiD~l 26 (110)
|+.|-+|..|....|.|+++||+=+.
T Consensus 152 M~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 152 MYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 67889999999999999999998655
No 218
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=89.35 E-value=0.74 Score=34.64 Aligned_cols=68 Identities=26% Similarity=0.364 Sum_probs=38.9
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-----CC----CCCEEEEEecCCCCCCCccccCCCccc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-----GA----KKNVFIIGATNRPDIIDPAILRPGRLD 84 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~----~~~v~vi~ttn~~~~ld~al~r~grfd 84 (110)
.+.++||||+|.+... .-..++..++.- .. ..++-+|++|+..- .....+|+|.
T Consensus 233 ~~gtl~ldei~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~ 295 (441)
T PRK10365 233 DGGTLFLDEIGDISPM--------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFR 295 (441)
T ss_pred CCCEEEEeccccCCHH--------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCch
Confidence 4678999999988422 112333333321 11 12456777776532 2344557775
Q ss_pred e-------EEEecCCCHHHHH
Q psy13774 85 Q-------LIYIPLPDEIWLI 98 (110)
Q Consensus 85 ~-------~i~~~~P~~~~R~ 98 (110)
. .+.+.+|.-.+|.
T Consensus 296 ~~l~~~l~~~~i~~ppLreR~ 316 (441)
T PRK10365 296 QDLYYRLNVVAIEVPSLRQRR 316 (441)
T ss_pred HHHHHHhccceecCCChhhcc
Confidence 3 5677778777774
No 219
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=88.78 E-value=1.5 Score=27.78 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=12.1
Q ss_pred cCCeEEEEcccccc
Q psy13774 13 AAPCVLFFDELDSI 26 (110)
Q Consensus 13 ~~P~ii~iDeiD~l 26 (110)
..+..+||+|+|.+
T Consensus 68 a~~gtL~l~~i~~L 81 (138)
T PF14532_consen 68 AKGGTLYLKNIDRL 81 (138)
T ss_dssp CTTSEEEEECGCCS
T ss_pred cCCCEEEECChHHC
Confidence 37789999999988
No 220
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=88.60 E-value=2.3 Score=31.99 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=49.7
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC--C--C-----CCCEEEEEecCCCC-------CCCccccC
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM--G--A-----KKNVFIIGATNRPD-------IIDPAILR 79 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~--~--~-----~~~v~vi~ttn~~~-------~ld~al~r 79 (110)
.|+-|+|++.. ...++..||+.++.- . + .-..++|++||..+ ....|+++
T Consensus 238 Gi~~f~Ei~K~--------------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d 303 (361)
T smart00763 238 GILEFVEMFKA--------------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD 303 (361)
T ss_pred ceEEEeehhcC--------------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh
Confidence 56777777633 355777888777742 1 1 12468999999883 66889999
Q ss_pred CCccceEEEecCCCH-HHHHHHHHHHhh
Q psy13774 80 PGRLDQLIYIPLPDE-IWLILSDKFLYK 106 (110)
Q Consensus 80 ~grfd~~i~~~~P~~-~~R~~~~~~~~~ 106 (110)
|+. .|.++.|-. .+-..|.+..+.
T Consensus 304 --R~~-~i~vpY~l~~~~E~~Iy~k~~~ 328 (361)
T smart00763 304 --RII-KVKVPYCLRVSEEAQIYEKLLR 328 (361)
T ss_pred --ceE-EEeCCCcCCHHHHHHHHHHHhc
Confidence 997 788888763 344456655543
No 221
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.19 E-value=8.1 Score=31.34 Aligned_cols=14 Identities=7% Similarity=0.233 Sum_probs=11.9
Q ss_pred CCeEEEEccccccc
Q psy13774 14 APCVLFFDELDSIA 27 (110)
Q Consensus 14 ~P~ii~iDeiD~l~ 27 (110)
...||||||+|.++
T Consensus 195 ~~~IILIDEiPn~~ 208 (637)
T TIGR00602 195 DKKIILVEDLPNQF 208 (637)
T ss_pred ceeEEEeecchhhc
Confidence 46799999999875
No 222
>KOG2680|consensus
Probab=87.53 E-value=3.5 Score=30.93 Aligned_cols=13 Identities=46% Similarity=0.846 Sum_probs=11.2
Q ss_pred CCeEEEEcccccc
Q psy13774 14 APCVLFFDELDSI 26 (110)
Q Consensus 14 ~P~ii~iDeiD~l 26 (110)
-|.++||||++-|
T Consensus 288 vpGVLFIDEvHML 300 (454)
T KOG2680|consen 288 VPGVLFIDEVHML 300 (454)
T ss_pred ccceEEEeeehhh
Confidence 3999999999965
No 223
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=87.45 E-value=1.9 Score=30.86 Aligned_cols=56 Identities=18% Similarity=0.155 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
-.+++|-...|.++++||== . .-+...+..+.+++ .+++.+ +..|+..|.+...+-
T Consensus 148 V~lARAL~~~p~lllLDEP~---------~-gvD~~~~~~i~~lL---~~l~~e-g~tIl~vtHDL~~v~ 203 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPF---------T-GVDVAGQKEIYDLL---KELRQE-GKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHhccCCCEEEecCCc---------c-cCCHHHHHHHHHHH---HHHHHC-CCEEEEEeCCcHHhH
Confidence 35677888999999999932 1 00112333444444 444445 667777887766443
No 224
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=87.26 E-value=0.82 Score=31.75 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=26.1
Q ss_pred HHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC-----------CCCCEEEEEecC----------
Q psy13774 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-----------AKKNVFIIGATN---------- 68 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~ttn---------- 68 (110)
+.++. .|+|+||+-.+ ..+++..|..-++.-. -..+.++|+|+|
T Consensus 103 slAh~-GVLflDE~~ef--------------~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~ 167 (206)
T PF01078_consen 103 SLAHR-GVLFLDELNEF--------------DRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDP 167 (206)
T ss_dssp GGGTT-SEEEECETTTS---------------HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S---------
T ss_pred HHhcC-CEEEechhhhc--------------CHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccc
Confidence 34444 69999999866 3557777777765310 023577888754
Q ss_pred -------------CCCCCCccccCCCccceEEEecCCCHH
Q psy13774 69 -------------RPDIIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 69 -------------~~~~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
+...|...++. |||..++++..+.+
T Consensus 168 ~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 168 DNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp ----------------------------------------
T ss_pred cccccccccccccccccccccccc--cccccccccccccC
Confidence 23456666777 88888888766654
No 225
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=87.16 E-value=4.3 Score=30.57 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSR 30 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r 30 (110)
+..+++......|.+|+||++..+....
T Consensus 147 le~I~~~i~~~~~~lVVIDSIq~l~~~~ 174 (372)
T cd01121 147 LEDILASIEELKPDLVIIDSIQTVYSSE 174 (372)
T ss_pred HHHHHHHHHhcCCcEEEEcchHHhhccc
Confidence 5667777888899999999999987543
No 226
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=87.07 E-value=0.8 Score=35.63 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=44.3
Q ss_pred HHHHHHHHHh----cCCe-EEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccc
Q psy13774 3 IATGASMARA----AAPC-VLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAI 77 (110)
Q Consensus 3 l~~~F~~A~~----~~P~-ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al 77 (110)
|.++|+..-+ -.|- |+||||++.||..- .+.++.. +.++-.+-.+.+|=|+..|.+|.+||..+
T Consensus 239 LsELfe~LPEvGD~dkPklVfFfDEAHLLF~da----------~kall~~-ieqvvrLIRSKGVGv~fvTQ~P~DiP~~V 307 (502)
T PF05872_consen 239 LSELFEQLPEVGDLDKPKLVFFFDEAHLLFNDA----------PKALLDK-IEQVVRLIRSKGVGVYFVTQNPTDIPDDV 307 (502)
T ss_pred HHHHHHhCccCCCCCCceEEEEEechhhhhcCC----------CHHHHHH-HHHHHHHhhccCceEEEEeCCCCCCCHHH
Confidence 4455555432 2355 56799999998432 2222222 22222333567888889999999999999
Q ss_pred cCCCccceEE
Q psy13774 78 LRPGRLDQLI 87 (110)
Q Consensus 78 ~r~grfd~~i 87 (110)
+. -+..+|
T Consensus 308 L~--QLGnrI 315 (502)
T PF05872_consen 308 LG--QLGNRI 315 (502)
T ss_pred HH--hhhhHH
Confidence 86 554444
No 227
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=86.99 E-value=2 Score=29.13 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCcc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRL 83 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grf 83 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|++.+.++.
T Consensus 135 rl~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~~-------- 192 (207)
T PRK13539 135 RVALARLLVSNRPIWILDEPTAAL----------DAAAVALFAELIRAHL---AQ-GGIVIAATHIPLGLPG-------- 192 (207)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCchhhcc--------
Confidence 345666777889999999965321 1123333333443332 22 4567888888877774
Q ss_pred ceEEEecCCCH
Q psy13774 84 DQLIYIPLPDE 94 (110)
Q Consensus 84 d~~i~~~~P~~ 94 (110)
|..+.+..|..
T Consensus 193 ~~~~~~~~~~~ 203 (207)
T PRK13539 193 ARELDLGPFAA 203 (207)
T ss_pred CcEEeecCccC
Confidence 44566655543
No 228
>KOG0478|consensus
Probab=86.18 E-value=3.2 Score=33.96 Aligned_cols=69 Identities=22% Similarity=0.418 Sum_probs=42.6
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHh------hhcCCC--CCCEEEEEecCCCC-------------CC
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTE------MDGMGA--KKNVFIIGATNRPD-------------II 73 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~------ld~~~~--~~~v~vi~ttn~~~-------------~l 73 (110)
-.|-.|||+|.+.. ..+.++.+.+.+ ..|+-. +.+.-|+|+.|-.. .|
T Consensus 527 ~GiCCIDEFDKM~d-----------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~L 595 (804)
T KOG0478|consen 527 NGICCIDEFDKMSD-----------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINL 595 (804)
T ss_pred CceEEchhhhhhhH-----------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCC
Confidence 35778999998732 223344333322 112111 34677889999332 68
Q ss_pred CccccCCCccceEEEe-cCCCHHH
Q psy13774 74 DPAILRPGRLDQLIYI-PLPDEIW 96 (110)
Q Consensus 74 d~al~r~grfd~~i~~-~~P~~~~ 96 (110)
+|.|++ |||..+-+ +.||+..
T Consensus 596 pptLLS--RFDLIylllD~~DE~~ 617 (804)
T KOG0478|consen 596 PPTLLS--RFDLIFLLLDKPDERS 617 (804)
T ss_pred Chhhhh--hhcEEEEEecCcchhH
Confidence 899999 99986554 7788763
No 229
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=86.15 E-value=1.5 Score=30.88 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=31.2
Q ss_pred HHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEec
Q psy13774 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGAT 67 (110)
Q Consensus 8 ~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tt 67 (110)
..++.+.|.+|+||.+..+........ .....+..++..+..+....++.++.++
T Consensus 134 ~~~~~~~~~~vvID~l~~l~~~~~~~~-----~~~~~~~~~~~~L~~la~~~~vtvll~s 188 (271)
T cd01122 134 YMAVSHGIQHIIIDNLSIMVSDERASG-----DERKALDEIMTKLRGFATEHGIHITLVS 188 (271)
T ss_pred HHHhcCCceEEEECCHHHHhccCCCch-----hHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 344567899999999998864431111 2233345555555555444454444444
No 230
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=86.14 E-value=1.5 Score=33.12 Aligned_cols=67 Identities=25% Similarity=0.383 Sum_probs=39.5
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-----CC----CCCEEEEEecCCCCCCCccccCCCccce
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-----GA----KKNVFIIGATNRPDIIDPAILRPGRLDQ 85 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~----~~~v~vi~ttn~~~~ld~al~r~grfd~ 85 (110)
..+|||||+|.+-.. .-..|+..++.- .. ..++-+|++||.. +. .+.+.|+|..
T Consensus 238 ~gtl~ld~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~--l~-~~~~~g~~~~ 300 (457)
T PRK11361 238 EGTLLLDEIGEMPLV--------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD--LQ-AMVKEGTFRE 300 (457)
T ss_pred CCEEEEechhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC--HH-HHHHcCCchH
Confidence 468999999988322 223344444321 11 1257888998853 11 3344456654
Q ss_pred -------EEEecCCCHHHHH
Q psy13774 86 -------LIYIPLPDEIWLI 98 (110)
Q Consensus 86 -------~i~~~~P~~~~R~ 98 (110)
.+.+.+|.-.+|.
T Consensus 301 ~l~~~l~~~~i~~ppLreR~ 320 (457)
T PRK11361 301 DLFYRLNVIHLILPPLRDRR 320 (457)
T ss_pred HHHHHhccceecCCChhhch
Confidence 4667888888875
No 231
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=85.87 E-value=1.3 Score=32.18 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=37.8
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP 75 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~ 75 (110)
+=+-.+..|-.+.|.++++||=-+ +- +..... .+...+..+....+..|+.+|+.++.+..
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~--------GL--Dp~~~~---~~~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTS--------GL--DPESRR---EIWELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCc--------CC--CHHHHH---HHHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 445567788889999999999431 11 112233 34444444444555788888888875543
No 232
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=85.57 E-value=2.3 Score=31.23 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC--CCCccccCCCc
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD--IIDPAILRPGR 82 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~--~ld~al~r~gr 82 (110)
.+...-+...+-+++|||++.++..... ..+.+++.+-...+.+ +-.++.+||-.... .-|+.+-+ |
T Consensus 136 ~~~~llr~~~vrmLIIDE~H~lLaGs~~-------~qr~~Ln~LK~L~NeL--~ipiV~vGt~~A~~al~~D~QLa~--R 204 (302)
T PF05621_consen 136 QVLRLLRRLGVRMLIIDEFHNLLAGSYR-------KQREFLNALKFLGNEL--QIPIVGVGTREAYRALRTDPQLAS--R 204 (302)
T ss_pred HHHHHHHHcCCcEEEeechHHHhcccHH-------HHHHHHHHHHHHhhcc--CCCeEEeccHHHHHHhccCHHHHh--c
Confidence 4556778889999999999998643321 2233333333222221 33667777654443 44667777 9
Q ss_pred cceEEEecC--CCHHHHH
Q psy13774 83 LDQLIYIPL--PDEIWLI 98 (110)
Q Consensus 83 fd~~i~~~~--P~~~~R~ 98 (110)
|+. +.+|. +|.+-+.
T Consensus 205 F~~-~~Lp~W~~d~ef~~ 221 (302)
T PF05621_consen 205 FEP-FELPRWELDEEFRR 221 (302)
T ss_pred cCC-ccCCCCCCCcHHHH
Confidence 854 44544 4444444
No 233
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=84.99 E-value=1.7 Score=31.10 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=18.7
Q ss_pred CcHHHHHHHHHhcCCeEEEEcc
Q psy13774 1 MRIATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 1 ~~l~~~F~~A~~~~P~ii~iDe 22 (110)
|+=+-++++|-...|-|+++||
T Consensus 135 MrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 135 MRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred HHHHHHHHHHHhcCCCEEEEcC
Confidence 4556678889999999999999
No 234
>KOG1051|consensus
Probab=84.76 E-value=3 Score=34.99 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=33.4
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC---------CCCCEEEEEecCCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG---------AKKNVFIIGATNRP 70 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~ttn~~ 70 (110)
+.+..+...-|||||||||. ..-.+++.|++.+|.-+ .-.+++||.|+|.-
T Consensus 652 LteavrrrP~sVVLfdeIEk--------------Ah~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 652 LTEAVKRRPYSVVLFEEIEK--------------AHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVG 711 (898)
T ss_pred HHHHHhcCCceEEEEechhh--------------cCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccc
Confidence 33444444459999999993 23456677777777531 12469999998763
No 235
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=84.67 E-value=2.3 Score=27.83 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=27.1
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
..|+++++||...=.... ....+...+...... +..+|.+|++++...
T Consensus 98 ~~~~llllDEp~~gld~~---------~~~~l~~~l~~~~~~-----~~~vii~TH~~~~~~ 145 (162)
T cd03227 98 KPRPLYILDEIDRGLDPR---------DGQALAEAILEHLVK-----GAQVIVITHLPELAE 145 (162)
T ss_pred CCCCEEEEeCCCCCCCHH---------HHHHHHHHHHHHHhc-----CCEEEEEcCCHHHHH
Confidence 378999999988432111 223333334333332 346777888776543
No 236
>KOG0990|consensus
Probab=83.92 E-value=4.5 Score=30.27 Aligned_cols=61 Identities=21% Similarity=0.264 Sum_probs=39.2
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
.+..|++||+|++... .-+.|-..+..+.. ++-+..-+|++..+.|+++. ||-+ +.+.+-+
T Consensus 131 ~fKlvILDEADaMT~~--------------AQnALRRviek~t~--n~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~ 191 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD--------------AQNALRRVIEKYTA--NTRFATISNPPQKIHPAQQS--RCTR-FRFAPLT 191 (360)
T ss_pred ceeEEEecchhHhhHH--------------HHHHHHHHHHHhcc--ceEEEEeccChhhcCchhhc--cccc-CCCCCCC
Confidence 6789999999987422 22223334444433 33444678999999999998 8855 4443333
No 237
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=83.87 E-value=2.8 Score=30.91 Aligned_cols=68 Identities=26% Similarity=0.274 Sum_probs=38.1
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-----C----CCCCEEEEEecCCC-------CCCCccc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-----G----AKKNVFIIGATNRP-------DIIDPAI 77 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~----~~~~v~vi~ttn~~-------~~ld~al 77 (110)
....|||||+|.|-. ..-..|+..++.- . ...++-+|++||.. ..+.+.|
T Consensus 93 ~gGtL~Ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL 158 (329)
T TIGR02974 93 DGGTLFLDELATASL--------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADL 158 (329)
T ss_pred CCCEEEeCChHhCCH--------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHH
Confidence 357899999998831 1222344444321 0 12357788888753 1233344
Q ss_pred cCCCccceEEEecCCCHHHHH
Q psy13774 78 LRPGRLDQLIYIPLPDEIWLI 98 (110)
Q Consensus 78 ~r~grfd~~i~~~~P~~~~R~ 98 (110)
.. |+. .+.+.+|.-.+|.
T Consensus 159 ~~--rl~-~~~i~lPpLReR~ 176 (329)
T TIGR02974 159 LD--RLA-FDVITLPPLRERQ 176 (329)
T ss_pred HH--Hhc-chhcCCCchhhhh
Confidence 44 443 3567778877775
No 238
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=83.82 E-value=0.86 Score=31.26 Aligned_cols=85 Identities=11% Similarity=0.080 Sum_probs=43.5
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc-cccCCC------ccce
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP-AILRPG------RLDQ 85 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~-al~r~g------rfd~ 85 (110)
..+.+|+||.+.+++....... .......+.+..++..+..+....++.++.+.......+. .....| -.|-
T Consensus 106 ~~~~lvVIDsi~al~~~~~~~~-~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~~~~~~d~ 184 (225)
T PRK09361 106 ENVGLIVLDSATSLYRLELEDE-EDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHTLEHWSKT 184 (225)
T ss_pred hcccEEEEeCcHHHhHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcchhhhhccE
Confidence 6889999999999875421111 1111223344444444444434556677666544443332 111111 2345
Q ss_pred EEEecCCCHHHHH
Q psy13774 86 LIYIPLPDEIWLI 98 (110)
Q Consensus 86 ~i~~~~P~~~~R~ 98 (110)
.|.+..++...|.
T Consensus 185 ii~l~~~~~~~r~ 197 (225)
T PRK09361 185 ILRLEKFRNGKRR 197 (225)
T ss_pred EEEEEEccCCeEE
Confidence 7777665555553
No 239
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=83.71 E-value=7.8 Score=25.33 Aligned_cols=25 Identities=4% Similarity=-0.037 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCeEEEEcccccccc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAK 28 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~ 28 (110)
..+...+....|.+|+||++-.+..
T Consensus 85 ~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 85 QRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 3445556678899999999998764
No 240
>PF04465 DUF499: Protein of unknown function (DUF499); InterPro: IPR007555 This is a family of uncharacterised hypothetical prokaryotic proteins.
Probab=83.53 E-value=3.1 Score=35.52 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=14.7
Q ss_pred hcCCeEEEEccccccccc
Q psy13774 12 AAAPCVLFFDELDSIAKS 29 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~ 29 (110)
...||+|+|||+=..+.+
T Consensus 97 ~~~P~LILiDEl~~Y~~~ 114 (1035)
T PF04465_consen 97 GGRPVLILIDELVAYARQ 114 (1035)
T ss_pred CCCCEEEEeecHHHHHHH
Confidence 346999999999887763
No 241
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=83.33 E-value=1.5 Score=35.74 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=29.6
Q ss_pred CCEEEEEecCCCC-------------CCCccccCCCccceEEEe-cCCCHHHHHHHHHH
Q psy13774 59 KNVFIIGATNRPD-------------IIDPAILRPGRLDQLIYI-PLPDEIWLILSDKF 103 (110)
Q Consensus 59 ~~v~vi~ttn~~~-------------~ld~al~r~grfd~~i~~-~~P~~~~R~~~~~~ 103 (110)
.+.-|+|++|-.. ++++++++ |||..+.+ .-||.+.=+.+.++
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~h 481 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEH 481 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHH
Confidence 3566788888665 68899999 99987666 55776543333333
No 242
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=82.98 E-value=3.1 Score=31.57 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=11.4
Q ss_pred CCeEEEEccccccc
Q psy13774 14 APCVLFFDELDSIA 27 (110)
Q Consensus 14 ~P~ii~iDeiD~l~ 27 (110)
....|||||+|.+-
T Consensus 228 ~~gtl~l~ei~~l~ 241 (463)
T TIGR01818 228 DGGTLFLDEIGDMP 241 (463)
T ss_pred CCCeEEEEchhhCC
Confidence 36789999999883
No 243
>PF14516 AAA_35: AAA-like domain
Probab=82.37 E-value=9.9 Score=27.98 Aligned_cols=17 Identities=41% Similarity=0.731 Sum_probs=14.6
Q ss_pred hcCCeEEEEcccccccc
Q psy13774 12 AAAPCVLFFDELDSIAK 28 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~ 28 (110)
...|-||+|||+|.++.
T Consensus 125 ~~~~lVL~iDEiD~l~~ 141 (331)
T PF14516_consen 125 IDKPLVLFIDEIDRLFE 141 (331)
T ss_pred CCCCEEEEEechhhhcc
Confidence 35799999999999974
No 244
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=81.76 E-value=4.6 Score=28.14 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn 68 (110)
+.+.++|-+..|.++++||=-+- -.-.++.+.|.-|..+....+.+++.|-.
T Consensus 160 R~aIARaLameP~vmLFDEPTSA-------------LDPElVgEVLkv~~~LAeEgrTMv~VTHE 211 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSA-------------LDPELVGEVLKVMQDLAEEGRTMVVVTHE 211 (256)
T ss_pred HHHHHHHHhcCCceEeecCCccc-------------CCHHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 45667888999999999994321 12347788888888888888888877743
No 245
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=81.72 E-value=4.6 Score=32.28 Aligned_cols=68 Identities=13% Similarity=0.233 Sum_probs=37.9
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-----CCC----CCEEEEEecCCCCCCCccccCCCccc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-----GAK----KNVFIIGATNRPDIIDPAILRPGRLD 84 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~~----~~v~vi~ttn~~~~ld~al~r~grfd 84 (110)
....|||||||.+-. ..-..|+..++.- .+. -++-+|+||+..- ..+...|+|.
T Consensus 416 ~~GtL~ldei~~l~~--------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l---~~~~~~~~f~ 478 (638)
T PRK11388 416 HGGTLFLEKVEYLSP--------------ELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADL---AMLVEQNRFS 478 (638)
T ss_pred CCCEEEEcChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCH---HHHHhcCCCh
Confidence 357899999998731 1222344444321 111 1567888888542 2333445653
Q ss_pred e-------EEEecCCCHHHHH
Q psy13774 85 Q-------LIYIPLPDEIWLI 98 (110)
Q Consensus 85 ~-------~i~~~~P~~~~R~ 98 (110)
. .+.+.+|.-.+|.
T Consensus 479 ~dL~~~l~~~~i~lPpLreR~ 499 (638)
T PRK11388 479 RQLYYALHAFEITIPPLRMRR 499 (638)
T ss_pred HHHhhhhceeEEeCCChhhhh
Confidence 2 4667778877774
No 246
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=81.64 E-value=13 Score=27.47 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=39.1
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILR 79 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r 79 (110)
|+.++.+..-+.-..+|++||++.......+. .........+..|...+ ...+|+..-+|-..+--.-+...
T Consensus 160 Rl~ql~~W~g~dfdgvivfDEcH~akn~~~~~--~~~sk~g~avl~LQ~~L----P~ARvvY~SATgasep~NmaYm~ 231 (303)
T PF13872_consen 160 RLDQLVDWCGEDFDGVIVFDECHKAKNLSSGS--KKPSKTGIAVLELQNRL----PNARVVYASATGASEPRNMAYMS 231 (303)
T ss_pred hHHHHHHHHhcCCCceEEeccchhcCCCCccC--ccccHHHHHHHHHHHhC----CCCcEEEecccccCCCceeeeee
Confidence 56677777766566799999999875442211 11112222333333322 55678877777643332334555
No 247
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=81.44 E-value=4.4 Score=27.64 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=34.6
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccce
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQ 85 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~ 85 (110)
++..|-...|.++++||-.+-+.. .... +.+...+..+....+.-+|.+|+.++ +.. .+|+
T Consensus 131 ala~al~~~p~illlDEP~~~LD~----------~~~~--~~l~~~l~~~~~~~~~~iiiitH~~~-----~~~--~~d~ 191 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDE----------ENIE--ESLAEIIEERKSQKNFQLIVITHDEE-----LVD--AADH 191 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCH----------HHHH--HHHHHHHHHHHhccCCEEEEEEecHH-----HHh--hCCE
Confidence 344455678999999997743311 1222 12333333332332334556666644 333 5677
Q ss_pred EEEec
Q psy13774 86 LIYIP 90 (110)
Q Consensus 86 ~i~~~ 90 (110)
.+.+.
T Consensus 192 i~~l~ 196 (204)
T cd03240 192 IYRVE 196 (204)
T ss_pred EEEEe
Confidence 76663
No 248
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=81.43 E-value=4.1 Score=27.72 Aligned_cols=79 Identities=11% Similarity=0.063 Sum_probs=41.1
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCC-------CccceE
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRP-------GRLDQL 86 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~-------grfd~~ 86 (110)
.+++|+||-+-+++......... .....+.+..++..|..+....++.+|.+.......+..-.+| ...|-.
T Consensus 103 ~~~lvvIDsi~~l~~~~~~~~~~-~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~~~~~~d~~ 181 (218)
T cd01394 103 KVDLVVVDSATALYRLELGDDDT-TIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVI 181 (218)
T ss_pred CCcEEEEechHHhhhHHhcCccc-hHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcchhcceeEE
Confidence 48999999999986432211111 1122333444444455554456777777765443333111111 134667
Q ss_pred EEecCCC
Q psy13774 87 IYIPLPD 93 (110)
Q Consensus 87 i~~~~P~ 93 (110)
|.+....
T Consensus 182 i~l~~~~ 188 (218)
T cd01394 182 LRLEKLR 188 (218)
T ss_pred EEEEEcC
Confidence 7776554
No 249
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=81.34 E-value=2.3 Score=31.96 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=26.6
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP 70 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~ 70 (110)
-.+|+|||+..- +-....++..|+..+= ..++++|+|||++
T Consensus 128 ~~lLcfDEF~V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 128 SRLLCFDEFQVT-----------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred CCEEEEeeeecc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 359999998832 1122345555555542 4688999999975
No 250
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=81.06 E-value=4.6 Score=29.10 Aligned_cols=64 Identities=14% Similarity=0.304 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccc-------
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAI------- 77 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al------- 77 (110)
.++..++.+.|.+|++||+- ....+..++..+. .+.-+|++|+.+ .+..+.
T Consensus 185 ~~~~~i~~~~P~villDE~~----------------~~e~~~~l~~~~~-----~G~~vI~ttH~~-~~~~~~~r~~~~~ 242 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIG----------------REEDVEALLEALH-----AGVSIIATAHGR-DVEDLYKRPVFKE 242 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCC----------------cHHHHHHHHHHHh-----CCCEEEEEechh-HHHHHHhChHHHH
Confidence 46677888999999999942 0112333333332 345678888864 333333
Q ss_pred -cCCCccceEEEec
Q psy13774 78 -LRPGRLDQLIYIP 90 (110)
Q Consensus 78 -~r~grfd~~i~~~ 90 (110)
+..|-|++.|.+.
T Consensus 243 l~~~~~~~r~i~L~ 256 (270)
T TIGR02858 243 LIENEAFERYVVLS 256 (270)
T ss_pred HHhcCceEEEEEEe
Confidence 3356688888774
No 251
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=80.85 E-value=3.7 Score=31.02 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=37.2
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-----CC----CCCEEEEEecCCC-------CCCCccc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-----GA----KKNVFIIGATNRP-------DIIDPAI 77 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~----~~~v~vi~ttn~~-------~~ld~al 77 (110)
....|||||+|.+-. ..-..|+..++.- .. ..++-+|++|+.. ..+.+.|
T Consensus 233 ~~gtl~l~~i~~l~~--------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L 298 (445)
T TIGR02915 233 HGGTLFLDEIGDLPL--------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDL 298 (445)
T ss_pred CCCEEEEechhhCCH--------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHH
Confidence 357899999998831 1222344444321 11 1256788888754 1233333
Q ss_pred cCCCccceEEEecCCCHHHHH
Q psy13774 78 LRPGRLDQLIYIPLPDEIWLI 98 (110)
Q Consensus 78 ~r~grfd~~i~~~~P~~~~R~ 98 (110)
.. |+. .+.+.+|.-.+|.
T Consensus 299 ~~--~l~-~~~i~lPpLr~R~ 316 (445)
T TIGR02915 299 FY--RIA-EISITIPPLRSRD 316 (445)
T ss_pred HH--Hhc-cceecCCCchhch
Confidence 32 332 3667778877775
No 252
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=80.76 E-value=4.5 Score=27.56 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
++++++.+....|.++++||.-+=. + ......+...++..+.. .+..+|.+|+.++.+.
T Consensus 94 ~~~iL~~~~~~~p~llllDEp~~gl------D---~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~~ 152 (199)
T cd03283 94 LKEIVEKAKKGEPVLFLLDEIFKGT------N---SRERQAASAAVLKFLKN----KNTIGIISTHDLELAD 152 (199)
T ss_pred HHHHHHhccCCCCeEEEEecccCCC------C---HHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHHH
Confidence 4556666655689999999963211 0 00112233344444432 2456777787776543
No 253
>PRK11823 DNA repair protein RadA; Provisional
Probab=80.50 E-value=7.7 Score=29.93 Aligned_cols=28 Identities=7% Similarity=0.214 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSR 30 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r 30 (110)
+.++++..++..|.+|+||++..+....
T Consensus 145 l~~i~~~i~~~~~~lVVIDSIq~l~~~~ 172 (446)
T PRK11823 145 LEAILATIEEEKPDLVVIDSIQTMYSPE 172 (446)
T ss_pred HHHHHHHHHhhCCCEEEEechhhhcccc
Confidence 5567777888899999999999987543
No 254
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=80.15 E-value=8.1 Score=29.92 Aligned_cols=31 Identities=6% Similarity=0.114 Sum_probs=27.4
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGG 32 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~ 32 (110)
++.++.+......|.+++||-|-.++...-.
T Consensus 156 ~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~ 186 (456)
T COG1066 156 NLEDIIAELEQEKPDLVVIDSIQTLYSEEIT 186 (456)
T ss_pred CHHHHHHHHHhcCCCEEEEeccceeeccccc
Confidence 6889999999999999999999999876633
No 255
>PRK10263 DNA translocase FtsK; Provisional
Probab=80.12 E-value=2.9 Score=36.44 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=49.1
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC--CCCccccCCCccceEEEecCCC
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD--IIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~--~ld~al~r~grfd~~i~~~~P~ 93 (110)
-+|+|||+..|+.... + -+..++..+-.....-++.+|.+|.+|+ .|...++. -|..+|-+.+-+
T Consensus 1142 IVVIIDE~AdLm~~~~----------k-evE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS 1208 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG----------K-KVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 1208 (1355)
T ss_pred EEEEEcChHHHHhhhh----------H-HHHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcCC
Confidence 4899999988864311 1 1233444444444567999999999996 56666666 788889998888
Q ss_pred HHHHHHH
Q psy13774 94 EIWLILS 100 (110)
Q Consensus 94 ~~~R~~~ 100 (110)
...=..|
T Consensus 1209 ~~DSrtI 1215 (1355)
T PRK10263 1209 KIDSRTI 1215 (1355)
T ss_pred HHHHHHh
Confidence 6554333
No 256
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=79.86 E-value=4.6 Score=28.18 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
++.+.+.| ..|+++++||+-.=. +.. ....+...++..+.. ..+..+|.+|+.++-.+
T Consensus 101 ~~~il~~~--~~~sLvllDE~~~gT------~~~---d~~~i~~~il~~l~~---~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 101 TSHILSNC--TSRSLVILDELGRGT------STH---DGIAIAYATLHYLLE---EKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHHHHhC--CCCeEEEEccCCCCC------Chh---hHHHHHHHHHHHHHh---ccCCeEEEEcccHHHHH
Confidence 34444443 468999999976211 100 122223344444433 23456777888876543
No 257
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=79.31 E-value=2.3 Score=29.20 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=20.4
Q ss_pred CEEEEEecCCCCCC-CccccCCCccceEEEecC
Q psy13774 60 NVFIIGATNRPDII-DPAILRPGRLDQLIYIPL 91 (110)
Q Consensus 60 ~v~vi~ttn~~~~l-d~al~r~grfd~~i~~~~ 91 (110)
..++|||||..+-| |+.--| || ..|++..
T Consensus 140 ~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 140 RAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred eEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 57899999998844 456667 77 4555544
No 258
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=79.12 E-value=19 Score=25.24 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhh-hcCCC--------------CCCEEEEEec
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEM-DGMGA--------------KKNVFIIGAT 67 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~l-d~~~~--------------~~~v~vi~tt 67 (110)
+.++|.-+.. ..+++.+||++.+-. ..-+++.+.+..+ +.+.. ....-++.|.
T Consensus 74 l~ril~G~~~-~GaW~cfdefnrl~~-----------~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~ 141 (231)
T PF12774_consen 74 LSRILKGLAQ-SGAWLCFDEFNRLSE-----------EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITM 141 (231)
T ss_dssp HHHHHHHHHH-HT-EEEEETCCCSSH-----------HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE
T ss_pred HHHHHHHHhh-cCchhhhhhhhhhhH-----------HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEee
Confidence 4566666655 469999999997721 1122222222222 11111 1234455566
Q ss_pred C----CCCCCCccccCCCccceEEEecCCCHHHHHHH
Q psy13774 68 N----RPDIIDPAILRPGRLDQLIYIPLPDEIWLILS 100 (110)
Q Consensus 68 n----~~~~ld~al~r~grfd~~i~~~~P~~~~R~~~ 100 (110)
| .-..+|+.++. -| +.|.+..||...-.++
T Consensus 142 np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 142 NPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp -B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHHH
T ss_pred ccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHHH
Confidence 6 33689998886 66 8899999998776544
No 259
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=79.11 E-value=2.3 Score=28.17 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=16.7
Q ss_pred HHHHHHHHHh-cCCeEEEEccccccccc
Q psy13774 3 IATGASMARA-AAPCVLFFDELDSIAKS 29 (110)
Q Consensus 3 l~~~F~~A~~-~~P~ii~iDeiD~l~~~ 29 (110)
++++.+.+++ ..|.+|+||-+..+...
T Consensus 129 ~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 129 LEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred HHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 3456667777 67999999999999866
No 260
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=78.92 E-value=5.2 Score=27.81 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP 75 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~ 75 (110)
++.+.+.| ..|++|++||+-.= .+ ......+...++..+.. ..+..+|.+|+..+-...
T Consensus 100 ~~~il~~~--~~~sLvLlDE~~~G------t~---~~dg~~la~ail~~L~~---~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 100 TANILRHA--TPDSLVILDELGRG------TS---THDGYAIAHAVLEYLVK---KVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHhC--CCCeEEEEecccCC------CC---chHHHHHHHHHHHHHHH---hcCCcEEEEeccHHHHHH
Confidence 44455544 67899999996531 11 11223334444444433 134567778887665443
No 261
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=78.87 E-value=6.4 Score=26.17 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-.+..|-...|.++++||--
T Consensus 135 rv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 135 RVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred HHHHHHHHhcCCCEEEEcCCc
Confidence 345667777899999999955
No 262
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=78.82 E-value=11 Score=26.74 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
-..++|--+.|+|+++||-=+ .- +-...+.+..++ .+++.. +-.+|.+|+..+.+.
T Consensus 142 V~iARAlvh~P~i~vlDEP~s--------GL--Di~~~r~~~dfi---~q~k~e-gr~viFSSH~m~Eve 197 (245)
T COG4555 142 VAIARALVHDPSILVLDEPTS--------GL--DIRTRRKFHDFI---KQLKNE-GRAVIFSSHIMQEVE 197 (245)
T ss_pred HHHHHHHhcCCCeEEEcCCCC--------Cc--cHHHHHHHHHHH---HHhhcC-CcEEEEecccHHHHH
Confidence 345667789999999999421 11 112333444444 444333 445666666655443
No 263
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=78.82 E-value=6.5 Score=28.88 Aligned_cols=68 Identities=26% Similarity=0.285 Sum_probs=37.8
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-----CC----CCCEEEEEecCCC-------CCCCccc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-----GA----KKNVFIIGATNRP-------DIIDPAI 77 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~----~~~v~vi~ttn~~-------~~ld~al 77 (110)
....+||||+|.|-. ..-..|+..++.- .+ ..++-+|++|+.. ..+.+.+
T Consensus 100 ~gGtL~l~~i~~L~~--------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL 165 (326)
T PRK11608 100 DGGTLFLDELATAPM--------------LVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADL 165 (326)
T ss_pred CCCeEEeCChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHH
Confidence 356899999998831 1222333333321 01 1257788888763 2344555
Q ss_pred cCCCccceEEEecCCCHHHHH
Q psy13774 78 LRPGRLDQLIYIPLPDEIWLI 98 (110)
Q Consensus 78 ~r~grfd~~i~~~~P~~~~R~ 98 (110)
.. ||. .+.+.+|.-.+|.
T Consensus 166 ~~--~l~-~~~i~lPpLReR~ 183 (326)
T PRK11608 166 LD--RLA-FDVVQLPPLRERQ 183 (326)
T ss_pred HH--hcC-CCEEECCChhhhh
Confidence 55 553 3556677777764
No 264
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.79 E-value=3.1 Score=28.15 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+ ....+..+|.+|++++.+.
T Consensus 136 rv~ia~al~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~---~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 136 RVALARVLVRDKPVLLLDEPFAAL----------DPALRAEMLDLVLDL---HAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHHH
Confidence 345666777889999999966322 112333333344333 2233446667777765443
No 265
>KOG2035|consensus
Probab=78.55 E-value=12 Score=27.69 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=49.4
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCHH
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~ 95 (110)
-+|+|-|+|.|.. ..-..|-.-|..+.+ ..=+|..+|....+=+++++ |. ..|.++.|+.+
T Consensus 129 Kvvvi~ead~LT~--------------dAQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~e 189 (351)
T KOG2035|consen 129 KVVVINEADELTR--------------DAQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDE 189 (351)
T ss_pred EEEEEechHhhhH--------------HHHHHHHHHHHHHhc--CceEEEEecCcccchhHHhh--he-eEEeCCCCCHH
Confidence 4888999998832 122334455665533 34455677888888889998 75 56889999999
Q ss_pred HHHHHHHHHh
Q psy13774 96 WLILSDKFLY 105 (110)
Q Consensus 96 ~R~~~~~~~~ 105 (110)
+-..++....
T Consensus 190 eI~~vl~~v~ 199 (351)
T KOG2035|consen 190 EITSVLSKVL 199 (351)
T ss_pred HHHHHHHHHH
Confidence 8877666544
No 266
>PRK09694 helicase Cas3; Provisional
Probab=78.10 E-value=4.3 Score=34.10 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=28.3
Q ss_pred HHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEec
Q psy13774 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGAT 67 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tt 67 (110)
.-..+-++|+|||++++= .....++..++.++... ..+++++-+|
T Consensus 435 ~~~La~svvIiDEVHAyD-----------~ym~~lL~~~L~~l~~~--g~~vIllSAT 479 (878)
T PRK09694 435 GFGLGRSVLIVDEVHAYD-----------AYMYGLLEAVLKAQAQA--GGSVILLSAT 479 (878)
T ss_pred HHhhccCeEEEechhhCC-----------HHHHHHHHHHHHHHHhc--CCcEEEEeCC
Confidence 334567899999999871 13455777777776553 3345555444
No 267
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=78.08 E-value=7.9 Score=31.72 Aligned_cols=69 Identities=16% Similarity=0.017 Sum_probs=44.3
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc-----cccCCCccceE
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP-----AILRPGRLDQL 86 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~-----al~r~grfd~~ 86 (110)
...|.+++|||+..++.... ......+..+.... ...+..++.+|..++++.. +++. -.+..
T Consensus 635 ~~~~~~~viDEaw~ll~~~~-------~~~~~~i~~~~r~~----RK~g~~~~~~TQ~~~D~~~~~~~~~il~--n~~~~ 701 (797)
T TIGR02746 635 RKRRKICIIDEAWSLLDGAN-------PQAADFIETGYRRA----RKYGGAFITITQGIEDFYSSPEARAAYA--NSDWK 701 (797)
T ss_pred CCCceEEEEecHHHHhhccc-------HHHHHHHHHHHHHH----hhcCceEEEEEecHHHhccCHHHHHHHh--cccce
Confidence 35699999999999975110 12333444443333 3456688899999988854 4554 56677
Q ss_pred EEecCCC
Q psy13774 87 IYIPLPD 93 (110)
Q Consensus 87 i~~~~P~ 93 (110)
|.++.+.
T Consensus 702 i~L~~~~ 708 (797)
T TIGR02746 702 IILRQSA 708 (797)
T ss_pred eeecCCH
Confidence 8887663
No 268
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=77.34 E-value=26 Score=26.57 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=40.6
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
..+.||+|||..+= ...+.+..+ .|... .++++.+++...-.-..+-.=|||. ..+++.|-+
T Consensus 94 ~~~yifLDEIq~v~------------~W~~~lk~l---~d~~~--~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlS 155 (398)
T COG1373 94 EKSYIFLDEIQNVP------------DWERALKYL---YDRGN--LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLS 155 (398)
T ss_pred CCceEEEecccCch------------hHHHHHHHH---Hcccc--ceEEEECCchhhhccchhhhcCCCc-eeEEECCCC
Confidence 44799999999651 122333322 23211 1567666666665555555667894 667887888
Q ss_pred HHHHH
Q psy13774 94 EIWLI 98 (110)
Q Consensus 94 ~~~R~ 98 (110)
..+..
T Consensus 156 F~Efl 160 (398)
T COG1373 156 FREFL 160 (398)
T ss_pred HHHHH
Confidence 77764
No 269
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=76.42 E-value=12 Score=25.45 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=28.8
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC-CCCEEEEEecCCCCCCC
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA-KKNVFIIGATNRPDIID 74 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vi~ttn~~~~ld 74 (110)
...|.++++||-.+-+.. .....+.+++..+- .. .....++.+|++++.+.
T Consensus 129 ~~~p~illlDEP~~glD~----------~~~~~~~~~l~~~~--~~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 129 VMESPFRCLDEFDVFMDM----------VNRKISTDLLVKEA--KKQPGRQFIFITPQDISGLA 180 (198)
T ss_pred ccCCCEEEecCcccccCH----------HHHHHHHHHHHHHH--hcCCCcEEEEEECCcccccc
Confidence 478999999998754321 12222333333321 12 23446777888887775
No 270
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=76.11 E-value=6.7 Score=30.61 Aligned_cols=68 Identities=24% Similarity=0.365 Sum_probs=37.3
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc-----CCC----CCCEEEEEecCCCCCCCccccCCCccc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG-----MGA----KKNVFIIGATNRPDIIDPAILRPGRLD 84 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~~----~~~v~vi~ttn~~~~ld~al~r~grfd 84 (110)
....|||||+|.+-. ..-..|+..++. +.+ ..++-+|++||.. +. .+...|+|.
T Consensus 281 ~gGtL~ldeI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~--l~-~~~~~~~f~ 343 (509)
T PRK05022 281 DGGTLFLDEIGELPL--------------ALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD--LR-EEVRAGRFR 343 (509)
T ss_pred CCCEEEecChhhCCH--------------HHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC--HH-HHHHcCCcc
Confidence 356799999998831 122233333332 111 1257788888764 11 223334443
Q ss_pred e-------EEEecCCCHHHHH
Q psy13774 85 Q-------LIYIPLPDEIWLI 98 (110)
Q Consensus 85 ~-------~i~~~~P~~~~R~ 98 (110)
. .+.+.+|.-.+|.
T Consensus 344 ~dL~~rl~~~~i~lPpLreR~ 364 (509)
T PRK05022 344 ADLYHRLSVFPLSVPPLRERG 364 (509)
T ss_pred HHHHhcccccEeeCCCchhch
Confidence 2 4667778877775
No 271
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=75.96 E-value=4.7 Score=32.84 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=44.5
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC-----ccccCCCccceE
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID-----PAILRPGRLDQL 86 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld-----~al~r~grfd~~ 86 (110)
...|.+++|||+..++... .....+..++..+.. .+..++.+|..+.++. .+++. -.+..
T Consensus 627 ~~~~~~i~iDEa~~ll~~~---------~~~~~i~~~~r~~RK----~~~~~~~~TQ~~~d~~~~~~~~~il~--n~~~k 691 (785)
T TIGR00929 627 DGRPFLIIIDEAWQYLGNP---------VFAAKIRDWLKTLRK----ANGIVVLATQSINDALGSRIADSILE--QCATK 691 (785)
T ss_pred CCCCeEEEEechhhhcCCH---------HHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHhcCchHHHHHH--hCCEE
Confidence 4579999999999887422 233444555544433 3557778888887653 34555 67788
Q ss_pred EEecCCCH
Q psy13774 87 IYIPLPDE 94 (110)
Q Consensus 87 i~~~~P~~ 94 (110)
|.++.|+.
T Consensus 692 i~l~~~~~ 699 (785)
T TIGR00929 692 IFLPNPEA 699 (785)
T ss_pred EEcCCCCC
Confidence 88887753
No 272
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=75.62 E-value=3.1 Score=28.33 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=35.4
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
...+.+|+||-+-.++......... .....+.+..++..|..+....++.+|.+......
T Consensus 112 ~~~~~lvVIDsis~l~~~~~~~~~~-~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~ 171 (226)
T cd01393 112 SGRVDLVVVDSVAALFRKEFIGRGM-LAERARLLSQALRKLLRLADKFNVAVVFTNQVRAK 171 (226)
T ss_pred cCCeeEEEEcCcchhhhhhhcCCch-HHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeee
Confidence 4578999999999987643221110 01223455666666666655666677766544333
No 273
>KOG2227|consensus
Probab=75.50 E-value=6.7 Score=30.85 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=51.8
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccC----CCccceEEEe
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILR----PGRLDQLIYI 89 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r----~grfd~~i~~ 89 (110)
.|-++++||.|.|+..... ++.+ +-++..+ ...++++||.+|..+.-|..|.| -+.-...+.|
T Consensus 256 ~~~llVlDEmD~L~tr~~~-----------vLy~-lFewp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F 322 (529)
T KOG2227|consen 256 FMLLLVLDEMDHLITRSQT-----------VLYT-LFEWPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVF 322 (529)
T ss_pred ceEEEEechhhHHhhcccc-----------eeee-ehhcccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeee
Confidence 3789999999999832211 1111 2223333 45789999999999877765543 1223467889
Q ss_pred cCCCHHHHHHHHHHH
Q psy13774 90 PLPDEIWLILSDKFL 104 (110)
Q Consensus 90 ~~P~~~~R~~~~~~~ 104 (110)
++-+.++-.+|++.-
T Consensus 323 ~PYTk~qI~~Il~~r 337 (529)
T KOG2227|consen 323 PPYTKDQIVEILQQR 337 (529)
T ss_pred cCCCHHHHHHHHHHH
Confidence 888888888887653
No 274
>PRK15115 response regulator GlrR; Provisional
Probab=74.93 E-value=6.4 Score=29.73 Aligned_cols=67 Identities=22% Similarity=0.383 Sum_probs=38.7
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc-----CCC----CCCEEEEEecCCCCCCCccccCCCccce
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG-----MGA----KKNVFIIGATNRPDIIDPAILRPGRLDQ 85 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~~----~~~v~vi~ttn~~~~ld~al~r~grfd~ 85 (110)
...|||||+|.|-.. .-..|+..++. +.. ..++-+|+||+. +++..+. .|+|..
T Consensus 229 ~gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~-~~~f~~ 291 (444)
T PRK15115 229 GGTLFLDEIGDMPAP--------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMA-RGEFRE 291 (444)
T ss_pred CCEEEEEccccCCHH--------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHH-cCCccH
Confidence 468999999988322 12233333332 111 126788888885 3444443 366632
Q ss_pred -------EEEecCCCHHHHH
Q psy13774 86 -------LIYIPLPDEIWLI 98 (110)
Q Consensus 86 -------~i~~~~P~~~~R~ 98 (110)
.+.+.+|.-.+|.
T Consensus 292 ~l~~~l~~~~i~lPpLr~R~ 311 (444)
T PRK15115 292 DLYYRLNVVSLKIPALAERT 311 (444)
T ss_pred HHHHhhceeeecCCChHhcc
Confidence 4566778888874
No 275
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=74.90 E-value=8.5 Score=26.45 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=31.6
Q ss_pred HHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecC
Q psy13774 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn 68 (110)
++++.|.+|+||-+..+.... ... .....+..+...+..+....++.++.++.
T Consensus 119 ~~~~~~~~vvID~l~~l~~~~--~~~----~~~~~~~~~~~~L~~la~~~~~~ii~~~q 171 (242)
T cd00984 119 KKEHGLGLIVIDYLQLMSGSK--KKG----NRQQEVAEISRSLKLLAKELNVPVIALSQ 171 (242)
T ss_pred HHhcCCCEEEEcCchhcCCCC--CCC----CHHHHHHHHHHHHHHHHHHhCCeEEEecc
Confidence 445689999999999875322 011 22334455666666555555666666653
No 276
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=74.89 E-value=8.2 Score=26.22 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.|+++||--+=+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 149 rv~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 149 RVAIARALVNQPSLVLADEPTGNL----------DNNNAKIIFDLMLELN---RELNTSFLVVTHDLELA 205 (221)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCcC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 345667777899999999965221 1123334444444432 22234667777776533
No 277
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=74.85 E-value=5.8 Score=27.38 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+-++..|-...|.++++||--+=+ +......+..++..+. ...+..+|.+|++++.+.
T Consensus 140 rl~laral~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 140 RVEIARALLHRPALLLLDEPTVGL----------DPASRAAIVAHVRALC---RDQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEecChhhHh
Confidence 345777778899999999965322 1123333334443332 222345677777776553
No 278
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=74.72 E-value=8.6 Score=26.08 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=13.3
Q ss_pred HHHHHHhcCCeEEEEccccccc
Q psy13774 6 GASMARAAAPCVLFFDELDSIA 27 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~ 27 (110)
.|+..+.....++++||+|+-+
T Consensus 150 ~lA~~~~~~~p~~ilDEvd~~L 171 (220)
T PF02463_consen 150 LLALQRYKPSPFLILDEVDAAL 171 (220)
T ss_dssp HHHHHTCS--SEEEEESTTTTS
T ss_pred cccccccccccccccccccccc
Confidence 4444444444699999999653
No 279
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=74.63 E-value=5.2 Score=31.08 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+ ..+.+..||.+|++++.+.
T Consensus 176 rv~iA~al~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~l---~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 176 RVVLARQLAKEPFLFLADEPTGTL----------DPQTAKLVHNALEEA---VKASGISMVLTSHWPEVIE 233 (520)
T ss_pred HHHHHHHHhcCCCEEEeeCCcccC----------CHHHHHHHHHHHHHH---HHhcCcEEEEEeCCHHHHH
Confidence 446677788899999999955322 112233333333333 2233446778888776543
No 280
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=74.52 E-value=8.8 Score=25.77 Aligned_cols=58 Identities=10% Similarity=-0.027 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP 75 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~ 75 (110)
+-.+..|-...|.++++||--.=+ +......+..++..+. .. +..+|.+|+++..++.
T Consensus 135 rv~laral~~~p~~lilDEP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 135 QVALLRLWMSKAKLWLLDEPLVAL----------DELSLLTIITKIQEHR---AK-GGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccc----------CHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCchhccc
Confidence 345667777899999999965322 1123334444444332 22 3457778887776653
No 281
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=74.28 E-value=7.7 Score=26.14 Aligned_cols=58 Identities=9% Similarity=0.038 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP 75 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~ 75 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|++++.++.
T Consensus 137 rl~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 137 RVALARLWLTRAPLWILDEPFTAI----------DKQGVARLEALLAQHA---EQ-GGMVILTTHQDLPVAS 194 (204)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEecChhhhcc
Confidence 345566777899999999965322 1123334444444432 22 3467778888877763
No 282
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=74.15 E-value=4.9 Score=28.24 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=50.2
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
++.++-..-+..+|.+|++|- ..+..++ -+|+..+.+-.-...|++|-+.|..+.|-.|++- |
T Consensus 34 ~~~ea~~~i~~~~pDLILLDi---YmPd~~G-------------i~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~-G 96 (224)
T COG4565 34 TLEEAKMIIEEFKPDLILLDI---YMPDGNG-------------IELLPELRSQHYPVDVIVITAASDMETIKEALRY-G 96 (224)
T ss_pred cHHHHHHHHHhhCCCEEEEee---ccCCCcc-------------HHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhc-C
Confidence 355566667788999999864 4444432 1367777665556789999999999999988765 8
Q ss_pred ccceEEE
Q psy13774 82 RLDQLIY 88 (110)
Q Consensus 82 rfd~~i~ 88 (110)
=||.-|.
T Consensus 97 v~DYLiK 103 (224)
T COG4565 97 VVDYLIK 103 (224)
T ss_pred chhheec
Confidence 8887653
No 283
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=73.70 E-value=15 Score=29.77 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=38.1
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC-----CC----CCCEEEEEecCCCCCCCccccCCCccc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM-----GA----KKNVFIIGATNRPDIIDPAILRPGRLD 84 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~----~~~v~vi~ttn~~~~ld~al~r~grfd 84 (110)
....+||||+|.+-. ..-..|+..++.- .+ ..++-+|++|+..- . .+...|+|.
T Consensus 470 ~~GtL~Ldei~~L~~--------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l--~-~~~~~~~f~ 532 (686)
T PRK15429 470 DKSSLFLDEVGDMPL--------------ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDL--K-KMVADREFR 532 (686)
T ss_pred CCCeEEEechhhCCH--------------HHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCH--H-HHHHcCccc
Confidence 357899999998721 1222333333321 11 23577888887641 1 222234444
Q ss_pred e-------EEEecCCCHHHHH
Q psy13774 85 Q-------LIYIPLPDEIWLI 98 (110)
Q Consensus 85 ~-------~i~~~~P~~~~R~ 98 (110)
. .+.+.+|.-.+|.
T Consensus 533 ~~L~~~l~~~~i~lPpLreR~ 553 (686)
T PRK15429 533 SDLYYRLNVFPIHLPPLRERP 553 (686)
T ss_pred HHHHhccCeeEEeCCChhhhH
Confidence 3 5677888888875
No 284
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=73.42 E-value=10 Score=30.28 Aligned_cols=20 Identities=10% Similarity=-0.157 Sum_probs=13.7
Q ss_pred EEEecCCCHHHHH-HHHHHHh
Q psy13774 86 LIYIPLPDEIWLI-LSDKFLY 105 (110)
Q Consensus 86 ~i~~~~P~~~~R~-~~~~~~~ 105 (110)
...+...+.++|. +|-+.+-
T Consensus 516 ~s~V~~L~~eeRveEiARMl~ 536 (557)
T COG0497 516 ESRVRPLDKEERVEEIARMLG 536 (557)
T ss_pred EEeeeeCCHhHHHHHHHHHhc
Confidence 4556778888886 5666554
No 285
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=73.38 E-value=3.5 Score=34.40 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=51.3
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC-CCccccCCCccceEEEecC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI-IDPAILRPGRLDQLIYIPL 91 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~-ld~al~r~grfd~~i~~~~ 91 (110)
...-+|+|||.+.|...-. +. +...+..+-......++.+|.||.+|.. +-+.++. .|.-.|.+.+
T Consensus 638 lP~iviiiDe~adlm~~~~----------k~-ve~~i~rLa~~ara~GIHlilatqRps~dVit~ika--nipsrIaf~v 704 (858)
T COG1674 638 LPYIVIIIDEYADLMMVAG----------KE-LEELIARLAQKGRAAGIHLILATQRPSVDVITGIKA--NIPTRIALRL 704 (858)
T ss_pred CCeEEEEEcchHHHhhhhh----------HH-HHHHHHHHHHhhhhcceEEEEecCCCCcchhHHHHh--CCcceEEEEE
Confidence 3346899999999864321 11 4444455544445679999999999987 7666777 8888999888
Q ss_pred CCHHHHHH
Q psy13774 92 PDEIWLIL 99 (110)
Q Consensus 92 P~~~~R~~ 99 (110)
-+...-..
T Consensus 705 ~s~~dsr~ 712 (858)
T COG1674 705 SSKIDSRL 712 (858)
T ss_pred cCccceee
Confidence 77555433
No 286
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=73.14 E-value=9.7 Score=25.63 Aligned_cols=58 Identities=9% Similarity=0.022 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP 75 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~ 75 (110)
+-.+..|-...|.++++||--+-+. ......+.+++..+ ... +..+|.+|+++..++.
T Consensus 133 rl~laral~~~p~llllDEPt~~LD----------~~~~~~l~~~l~~~---~~~-g~tiii~sH~~~~~~~ 190 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALD----------KAGVARFAEAMAGH---CAR-GGMVVLTTHQDLGLSE 190 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCC----------HHHHHHHHHHHHHH---HhC-CCEEEEEecCchhhhh
Confidence 3456677788999999999653321 12333333444333 222 3356777887776654
No 287
>KOG0482|consensus
Probab=73.11 E-value=0.56 Score=37.15 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=29.4
Q ss_pred CCEEEEEecCCCC-------------CCCccccCCCccceEEEe-cCCCHHHHHHHHHH
Q psy13774 59 KNVFIIGATNRPD-------------IIDPAILRPGRLDQLIYI-PLPDEIWLILSDKF 103 (110)
Q Consensus 59 ~~v~vi~ttn~~~-------------~ld~al~r~grfd~~i~~-~~P~~~~R~~~~~~ 103 (110)
.+.-++|+.|-.. +||+||++ |||...-+ +.||.+.=+.+.++
T Consensus 481 AR~sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~H 537 (721)
T KOG0482|consen 481 ARTSILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQH 537 (721)
T ss_pred hhHHhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHH
Confidence 4667778877542 68999999 99974443 67876665555444
No 288
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=72.92 E-value=2.8 Score=31.85 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=15.5
Q ss_pred HHhcCCeEEEEccccccccc
Q psy13774 10 ARAAAPCVLFFDELDSIAKS 29 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~~ 29 (110)
|....|.|++|||+|-++..
T Consensus 291 la~~tpgivLiDeIdlflhP 310 (440)
T COG3950 291 LAKLTPGIVLIDEIDLFLHP 310 (440)
T ss_pred hhcCCCceEEeehhhhhcCH
Confidence 44556999999999987643
No 289
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=72.91 E-value=5 Score=28.83 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+. ..... .++..+..+....+.-||.+|++.+.+
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD----------~~~~~---~l~~~L~~l~~~~g~tviiitHd~~~~ 209 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLD----------PKGRK---EMMEMFYKLHKEKGLTTVLVTHSMEDA 209 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCC----------HHHHH---HHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3456677788999999999663221 12222 333333333333344666777766543
No 290
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=72.87 E-value=2.4 Score=33.05 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=34.4
Q ss_pred HHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+-+..|.++++||+++.+..- ..--++..+..+....++-+++.|++|+-++
T Consensus 521 llaerpn~~~iDEF~AhLD~~-------------TA~rVArkiselaRe~giTlivvThrpEv~~ 572 (593)
T COG2401 521 LLAERPNVLLIDEFAAHLDEL-------------TAVRVARKISELAREAGITLIVVTHRPEVGN 572 (593)
T ss_pred HHhcCCCcEEhhhhhhhcCHH-------------HHHHHHHHHHHHHHHhCCeEEEEecCHHHHh
Confidence 336779999999999875221 1122344444444456678889999998665
No 291
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=72.71 E-value=5.7 Score=32.81 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=45.7
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC-----ccccCCCccceE
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID-----PAILRPGRLDQL 86 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld-----~al~r~grfd~~ 86 (110)
...|.+++|||+..++... .....+..++..+ .+.+..++.+|..+.++- .+++. -.+-.
T Consensus 625 ~gr~~ii~iDEaw~~l~~~---------~~~~~i~~~~kt~----RK~ng~~~~~TQs~~D~~~s~~~~~i~~--n~~t~ 689 (789)
T PRK13853 625 DGRRFVMSCDEFRAYLLNP---------KFAAVVDKFLLTV----RKNNGMLILATQQPEHVLESPLGASLVA--QCMTK 689 (789)
T ss_pred CCCcEEEEEechhHHhCCH---------HHHHHHHHHHHHH----HHcCeEEEEecCCHHHHHcCchHHHHHH--hCCeE
Confidence 4579999999998886421 2233444444444 345567778888887654 34666 67788
Q ss_pred EEecCCCHH
Q psy13774 87 IYIPLPDEI 95 (110)
Q Consensus 87 i~~~~P~~~ 95 (110)
|.++-|...
T Consensus 690 I~Lpn~~a~ 698 (789)
T PRK13853 690 IFYPSPTAD 698 (789)
T ss_pred EEcCCcccc
Confidence 999888644
No 292
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=72.59 E-value=7.1 Score=26.87 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.|+++||--+=+ +......+.+++..+ ....+..+|.+|++++.+
T Consensus 154 l~la~al~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~---~~~~g~tvii~sH~~~~~ 209 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNL----------DARNADSIFQLLGEL---NRLQGTAFLVVTHDLQLA 209 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHH---HHhCCCEEEEEeCCHHHH
Confidence 45667777899999999965322 112333344444433 222344677777776543
No 293
>PRK08116 hypothetical protein; Validated
Probab=72.57 E-value=4.1 Score=29.18 Aligned_cols=69 Identities=14% Similarity=0.053 Sum_probs=37.1
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC-CC----CCccccCCCcc---ce
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP-DI----IDPAILRPGRL---DQ 85 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~-~~----ld~al~r~grf---d~ 85 (110)
...+|+|||+...- ........|...++..... +..+|.|||.+ +. ++..+.. |+ -.
T Consensus 178 ~~dlLviDDlg~e~------------~t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~ 242 (268)
T PRK08116 178 NADLLILDDLGAER------------DTEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCT 242 (268)
T ss_pred CCCEEEEecccCCC------------CCHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCE
Confidence 34699999986321 1122233444555543222 33466777765 33 4666776 64 34
Q ss_pred EEEecCCCHHHH
Q psy13774 86 LIYIPLPDEIWL 97 (110)
Q Consensus 86 ~i~~~~P~~~~R 97 (110)
.|.+.-||...+
T Consensus 243 ~v~~~g~d~R~~ 254 (268)
T PRK08116 243 PVENEGKSYRKE 254 (268)
T ss_pred EEEeeCcChhHH
Confidence 566666775443
No 294
>KOG2383|consensus
Probab=72.53 E-value=5.3 Score=30.84 Aligned_cols=13 Identities=31% Similarity=0.647 Sum_probs=10.6
Q ss_pred CCCEEEEEecCCC
Q psy13774 58 KKNVFIIGATNRP 70 (110)
Q Consensus 58 ~~~v~vi~ttn~~ 70 (110)
.++|+++||+|+.
T Consensus 222 ~~GvVlvATSNR~ 234 (467)
T KOG2383|consen 222 KNGVVLVATSNRA 234 (467)
T ss_pred hCCeEEEEeCCCC
Confidence 3589999999964
No 295
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=72.20 E-value=19 Score=25.17 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=36.4
Q ss_pred HHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEe
Q psy13774 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 89 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~ 89 (110)
.-...+++|++|+++... .+..+...+... ..+.-+|.||.... +-..+- .-+..+++
T Consensus 97 ~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR~~~-v~~~~~---~~~~~~~l 154 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTRDRS-VAGSLG---GTDKVIEL 154 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEESCGG-GGTTHH---SCEEEEEC
T ss_pred hhccccceeeeeeecccc----------------cccccccccccc--cccccccccccccc-cccccc---cccccccc
Confidence 334459999999988442 122222222221 23456667877643 211121 11578999
Q ss_pred cCCCHHHHHHHHHHHh
Q psy13774 90 PLPDEIWLILSDKFLY 105 (110)
Q Consensus 90 ~~P~~~~R~~~~~~~~ 105 (110)
+..+.++-..+++...
T Consensus 155 ~~L~~~ea~~L~~~~~ 170 (287)
T PF00931_consen 155 EPLSEEEALELFKKRA 170 (287)
T ss_dssp SS--HHHHHHHHHHHH
T ss_pred cccccccccccccccc
Confidence 9888887766665543
No 296
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=72.02 E-value=12 Score=27.79 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=39.0
Q ss_pred HHHHhcCCeEEEEcccccccccCCCCC--C-CCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 8 SMARAAAPCVLFFDELDSIAKSRGGSV--G-DGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 8 ~~A~~~~P~ii~iDeiD~l~~~r~~~~--~-~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
...+...+.+|+||-+-++.+...-.. . .......+.++.++..+.......++.+|.+....+.
T Consensus 127 ~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~ 194 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIREK 194 (321)
T ss_pred HHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecceec
Confidence 345567899999999999986422111 1 1111233555666666666655667777777554443
No 297
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=71.72 E-value=9.2 Score=26.47 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+ ....+..+|.+|++++.+
T Consensus 161 rl~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~---~~~~~~tiiivsH~~~~~ 217 (236)
T cd03267 161 RAEIAAALLHEPEILFLDEPTIGL----------DVVAQENIRNFLKEY---NRERGTTVLLTSHYMKDI 217 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCC----------CHHHHHHHHHHHHHH---HhcCCCEEEEEecCHHHH
Confidence 345677778899999999965322 112333344444333 223344667778776543
No 298
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=71.63 E-value=5.5 Score=27.00 Aligned_cols=57 Identities=18% Similarity=0.302 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 148 rv~la~al~~~p~lllLDEP~~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 148 RVAIARALANDPKIILADEPTGNL----------DSETGKEVMELLRELN---KEAGTTIVVVTHDPELA 204 (218)
T ss_pred HHHHHHHHccCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HhcCCeEEEEECCHHHH
Confidence 345667778899999999965322 1133344444444442 22345677777776543
No 299
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=71.54 E-value=5.7 Score=27.06 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+=+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 154 v~laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 209 (228)
T cd03257 154 VAIARALALNPKLLIADEPTSAL----------DVSVQAQILDLLKKLQ---EELGLTLLFITHDLGVV 209 (228)
T ss_pred HHHHHHHhcCCCEEEecCCCCCC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 35666777889999999965322 1123344444444432 22234677777776543
No 300
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=71.37 E-value=7.7 Score=26.77 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 153 rv~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tiii~tH~~~~~ 209 (243)
T TIGR02315 153 RVAIARALAQQPDLILADEPIASL----------DPKTSKQVMDYLKRIN---KEDGITVIINLHQVDLA 209 (243)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHHH
Confidence 345667778899999999965322 1123344444444432 22234566777776544
No 301
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=71.23 E-value=17 Score=28.55 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=36.8
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc-----CCC----CCCEEEEEecCCCC-------CCCcccc
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG-----MGA----KKNVFIIGATNRPD-------IIDPAIL 78 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~~----~~~v~vi~ttn~~~-------~ld~al~ 78 (110)
...|||||+|.+-.. .+ ..|+..++. ..+ ..++-+|++|+.+- .+.+.+.
T Consensus 299 ~GtL~LdeI~~L~~~-----------~Q---~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~ 364 (520)
T PRK10820 299 GGSVLLDEIGEMSPR-----------MQ---AKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLY 364 (520)
T ss_pred CCEEEEeChhhCCHH-----------HH---HHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence 568999999988321 12 233344432 111 12566888877641 2333344
Q ss_pred CCCccceEEEecCCCHHHHH
Q psy13774 79 RPGRLDQLIYIPLPDEIWLI 98 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~ 98 (110)
. |+. .+.+.+|.-.+|.
T Consensus 365 ~--rL~-~~~i~lPpLreR~ 381 (520)
T PRK10820 365 Y--RLN-VLTLNLPPLRDRP 381 (520)
T ss_pred h--hcC-eeEEeCCCcccCh
Confidence 4 443 3677777777765
No 302
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=71.21 E-value=11 Score=25.12 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=12.2
Q ss_pred cCCeEEEEccccccc
Q psy13774 13 AAPCVLFFDELDSIA 27 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~ 27 (110)
..|.++++||.+.-+
T Consensus 115 ~~p~llilDEp~~~L 129 (178)
T cd03239 115 KPSPFYVLDEIDAAL 129 (178)
T ss_pred CCCCEEEEECCCCCC
Confidence 578999999998543
No 303
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=71.18 E-value=12 Score=26.25 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=31.6
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+++.++..+. ..++|+|||+-.= ....+...+...++..+.. ..+..++.+|+..+-..
T Consensus 112 ~~~~il~~~~--~~sLvliDE~g~g---------T~~~eg~ai~~aile~l~~---~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 112 RLSSILRNAT--EKSLVLIDELGRG---------TNPEEGIAIAIAILEYLLE---KSGCFVIIATHFHELAE 170 (235)
T ss_dssp HHHHHHHH----TTEEEEEESTTTT---------SSHHHHHHHHHHHHHHHHH---TTT-EEEEEES-GGGGG
T ss_pred HHHhhhhhcc--cceeeecccccCC---------CChhHHHHHHHHHHHHHHH---hccccEEEEeccchhHH
Confidence 3556666554 5689999997521 1111233445556655553 23457888998876433
No 304
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=70.37 E-value=8.1 Score=26.91 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+=+. ......+..++..+ ....+..+|.+|++++.+
T Consensus 155 v~laral~~~p~llllDEP~~~LD----------~~~~~~l~~~l~~~---~~~~~~tiiivsH~~~~~ 210 (252)
T TIGR03005 155 VAIARALAMRPKVMLFDEVTSALD----------PELVGEVLNVIRRL---ASEHDLTMLLVTHEMGFA 210 (252)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCC----------HHHHHHHHHHHHHH---HHhcCcEEEEEeCCHHHH
Confidence 345666678899999999663321 12233333333333 223345667777776544
No 305
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=70.36 E-value=35 Score=29.51 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=40.8
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecC
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 91 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~ 91 (110)
...+.+|++||+|.. ..+..+....+.+ ..+--||.||++. .+.+....++.++++.
T Consensus 294 ~~krvLLVLDdv~~~----------------~~l~~L~~~~~~~--~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~ 350 (1153)
T PLN03210 294 KHRKVLIFIDDLDDQ----------------DVLDALAGQTQWF--GSGSRIIVITKDK-----HFLRAHGIDHIYEVCL 350 (1153)
T ss_pred hCCeEEEEEeCCCCH----------------HHHHHHHhhCccC--CCCcEEEEEeCcH-----HHHHhcCCCeEEEecC
Confidence 456789999998732 1233333222222 1233455567643 3333335678999999
Q ss_pred CCHHHHHHHHHHH
Q psy13774 92 PDEIWLILSDKFL 104 (110)
Q Consensus 92 P~~~~R~~~~~~~ 104 (110)
|+.++-..++..+
T Consensus 351 l~~~ea~~LF~~~ 363 (1153)
T PLN03210 351 PSNELALEMFCRS 363 (1153)
T ss_pred CCHHHHHHHHHHH
Confidence 9988776666544
No 306
>COG1106 Predicted ATPases [General function prediction only]
Probab=70.31 E-value=2.4 Score=32.06 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=35.1
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccC
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILR 79 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r 79 (110)
.+++|||+|... +......++..+-.......+.+++||....-+|-.+.+
T Consensus 272 k~l~iDEie~~l-------------Hp~lm~~~l~~~~~~~~~~niq~~~TTH~~e~id~~l~~ 322 (371)
T COG1106 272 KVLLIDEIENGL-------------HPSLMILILETLEDKVKNNNIQVFLTTHSTEFIDLLLER 322 (371)
T ss_pred ceEEeehhhhcc-------------CHHHHHHHHHHHHhhcccceEEEEeecccHHHHHHHHHh
Confidence 689999999653 222333344444333344589999999999999988876
No 307
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=69.72 E-value=6.8 Score=27.03 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+ ....+..+|.+|++++.
T Consensus 122 rv~la~al~~~p~lllLDEPt~gL----------D~~~~~~l~~~l~~~---~~~~~~tii~~sH~~~~ 177 (230)
T TIGR01184 122 RVAIARALSIRPKVLLLDEPFGAL----------DALTRGNLQEELMQI---WEEHRVTVLMVTHDVDE 177 (230)
T ss_pred HHHHHHHHHcCCCEEEEcCCCcCC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHH
Confidence 345667778899999999965322 112333333333333 22223456677777654
No 308
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=69.41 E-value=39 Score=24.38 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC-CCCEEEEEecCCCCCCCcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA-KKNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vi~ttn~~~~ld~al~ 78 (110)
+-.|.+|--..|-++++||-=+- -+ --....|++.++++.. ...--++.-|.+.+.++|.+-
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~G---------LD----l~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~t 241 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQG---------LD----LIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFT 241 (257)
T ss_pred HHHHHHHHhcCCCEEEecCcccc---------CC----hHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccc
Confidence 34678888899999999994211 10 1112234444444433 234456667899999998544
No 309
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=69.34 E-value=11 Score=29.00 Aligned_cols=58 Identities=9% Similarity=0.053 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+-.+..|-...|.++++||--+=+ +......+.+++..+. ...+..||.+|++++.+.
T Consensus 409 rv~la~al~~~p~lllLDEPt~gL----------D~~~~~~l~~~L~~l~---~~~~~tviivsHd~~~~~ 466 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGL----------DPLNRQLVRRFVDVLI---SEGETQLLFVSHHAEDAP 466 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccC----------CHHHHHHHHHHHHHHH---hcCCcEEEEEecchhhhh
Confidence 445677778899999999954211 1133444444444443 233444667778777664
No 310
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=69.13 E-value=24 Score=24.22 Aligned_cols=58 Identities=9% Similarity=0.117 Sum_probs=32.1
Q ss_pred HHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccc
Q psy13774 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAI 77 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al 77 (110)
+....|+++++||.-.-.. ......+...++..+... ...+..+|.+|+..+.+....
T Consensus 104 ~~~~~~slvllDE~~~gtd---------~~~~~~~~~ail~~l~~~-~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTD---------TEDGAGLLIATIEHLLKR-GPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HhCCCCcEEEeccccCCCC---------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEcChHHHHHhhh
Confidence 3456799999999763210 001233444455554321 123457778888877655443
No 311
>PRK09183 transposase/IS protein; Provisional
Probab=68.69 E-value=16 Score=25.90 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=11.3
Q ss_pred cCCeEEEEcccccc
Q psy13774 13 AAPCVLFFDELDSI 26 (110)
Q Consensus 13 ~~P~ii~iDeiD~l 26 (110)
..|.+++|||++..
T Consensus 163 ~~~dlLiiDdlg~~ 176 (259)
T PRK09183 163 MAPRLLIIDEIGYL 176 (259)
T ss_pred cCCCEEEEcccccC
Confidence 46789999999764
No 312
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=68.66 E-value=8.2 Score=26.15 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCeEEEEcccccc
Q psy13774 5 TGASMARAAAPCVLFFDELDSI 26 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l 26 (110)
-.+..|-...|.++++||--+-
T Consensus 137 l~laral~~~p~llllDEPt~~ 158 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSA 158 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCcc
Confidence 3455666788999999997643
No 313
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=68.58 E-value=8.2 Score=25.96 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 134 rv~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~~sH~~~~~ 189 (205)
T cd03226 134 RLAIAAALLSGKDLLIFDEPTSGL----------DYKNMERVGELIRELA---AQ-GKAVIVITHDYEFL 189 (205)
T ss_pred HHHHHHHHHhCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 345666777889999999965321 1123334444444432 22 34567777776543
No 314
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=68.47 E-value=7.5 Score=24.76 Aligned_cols=15 Identities=13% Similarity=0.344 Sum_probs=12.4
Q ss_pred CeEEEEccccccccc
Q psy13774 15 PCVLFFDELDSIAKS 29 (110)
Q Consensus 15 P~ii~iDeiD~l~~~ 29 (110)
.++|++||+|.+...
T Consensus 120 ~~~iViDE~h~l~~~ 134 (169)
T PF00270_consen 120 LSLIVIDEAHHLSDE 134 (169)
T ss_dssp ESEEEEETHHHHHHT
T ss_pred ceeeccCcccccccc
Confidence 678999999998643
No 315
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=68.44 E-value=9.6 Score=27.11 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--.=+ +......+.+++..+ ....+..+|.+|++++.+
T Consensus 145 rl~laraL~~~p~llilDEPt~gL----------D~~~~~~l~~~l~~l---~~~~g~tvli~tH~~~~~ 201 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGL----------DPQGVKELIDFLNDL---PETYGMTVIFSTHQLDLV 201 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHH
Confidence 456777888999999999965221 112333333444333 223345667777776654
No 316
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=68.42 E-value=10 Score=31.38 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=43.1
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC-----ccccCCCccceE
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID-----PAILRPGRLDQL 86 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld-----~al~r~grfd~~ 86 (110)
...|.++++||....+... .....+..++..+. ..+..++.+|+.++.+. ++++. -.+-.
T Consensus 640 ~g~p~il~iDE~w~~L~~~---------~~~~~i~~~lk~~R----K~~~~~i~~TQ~~~d~~~s~~~~~i~~--~~~t~ 704 (800)
T PRK13898 640 DGTPSMIVLDEAWALIDNP---------VFAPKIKDWLKVLR----KLNTFVIFATQSVEDASKSAISDTLVQ--QTATQ 704 (800)
T ss_pred cCCCcEEEEeCChhhCCCH---------HHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHhChhHHHHHH--hCCeE
Confidence 4679999999998876421 22233333443332 23446778888876543 45666 66778
Q ss_pred EEecCCCHH
Q psy13774 87 IYIPLPDEI 95 (110)
Q Consensus 87 i~~~~P~~~ 95 (110)
|.+|.|+..
T Consensus 705 I~lpn~~a~ 713 (800)
T PRK13898 705 IFLPNLKAT 713 (800)
T ss_pred EEcCChhhH
Confidence 888877654
No 317
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=68.41 E-value=9.5 Score=26.54 Aligned_cols=57 Identities=12% Similarity=0.242 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+ ....+..+|.+|++.+.+
T Consensus 161 rv~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~L~~~---~~~~~~tii~~sH~~~~~ 217 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGL----------NPKETKELDELIAEL---RNEHNVTVLLIEHDMKLV 217 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCC----------CHHHHHHHHHHHHHH---HhhcCCEEEEEeCCHHHH
Confidence 345666778889999999965321 112333444444433 233345777888877654
No 318
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.40 E-value=18 Score=24.42 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCeEEEEcccc
Q psy13774 5 TGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD 24 (110)
-.+..|-...|.++++||--
T Consensus 127 l~laral~~~p~llllDEPt 146 (202)
T cd03233 127 VSIAEALVSRASVLCWDNST 146 (202)
T ss_pred HHHHHHHhhCCCEEEEcCCC
Confidence 35666777889999999954
No 319
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=68.27 E-value=31 Score=22.98 Aligned_cols=57 Identities=9% Similarity=0.151 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP 75 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~ 75 (110)
-.+..|-...|.++++||--+=+ +......+..++.... ..+..+|.+|++++.+..
T Consensus 132 l~la~al~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNL----------SKENRDLLNNLIVMKA----NSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH----hCCCEEEEEeCCccccch
Confidence 34566667789999999976322 1123334444443321 224467778888776654
No 320
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=68.13 E-value=19 Score=26.81 Aligned_cols=65 Identities=22% Similarity=0.271 Sum_probs=38.4
Q ss_pred HHHhcCCeEEEEcccccccccCCCCC--CC-CCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 9 MARAAAPCVLFFDELDSIAKSRGGSV--GD-GGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 9 ~A~~~~P~ii~iDeiD~l~~~r~~~~--~~-~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
..+...+.+|+||-+-++.+...-.. .+ ......+.++.++..+.......++.+|.+....+.+
T Consensus 128 li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~i 195 (325)
T cd00983 128 LVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKI 195 (325)
T ss_pred HHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 44567899999999999986322111 11 1112235556666666665556677777765544444
No 321
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=68.11 E-value=8.4 Score=27.98 Aligned_cols=56 Identities=20% Similarity=0.099 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-.+.|.++++||--+=+ +......+..++..+. . .+.-+|.+|+..+.+
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gL----------D~~~~~~l~~~l~~l~---~-~g~till~sH~l~e~ 201 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGL----------DPQARHLMWERLRSLL---A-RGKTILLTTHFMEEA 201 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---h-CCCEEEEECCCHHHH
Confidence 445777888999999999954211 1133344444444442 2 244667777776544
No 322
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=67.98 E-value=12 Score=26.44 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||-..-+ +......+..++..+ ....+..+|.+|++++.+
T Consensus 151 rv~laral~~~p~llllDEPt~gL----------D~~~~~~l~~~L~~l---~~~~~~tiii~tH~~~~~ 207 (265)
T PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWL----------DISHQIDLLELLSEL---NREKGYTLAAVLHDLNQA 207 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCccccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 345667778899999999976322 112333333444333 222244677777777643
No 323
>KOG1968|consensus
Probab=67.83 E-value=9.6 Score=32.08 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=40.6
Q ss_pred EEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCHHH
Q psy13774 17 VLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEIW 96 (110)
Q Consensus 17 ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~~ 96 (110)
||++||+|.++. .+ +..+..+..... ....-+|.++|..+.-...-.. +-+.-++|+.|+..+
T Consensus 431 vil~devD~~~~-~d----------Rg~v~~l~~l~~----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~ 493 (871)
T KOG1968|consen 431 LILMDEVDGMFG-ED----------RGGVSKLSSLCK----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSEL 493 (871)
T ss_pred EEEEeccccccc-hh----------hhhHHHHHHHHH----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHH
Confidence 999999998865 21 112333333332 2333566777776655553333 544789999999988
Q ss_pred HHH
Q psy13774 97 LIL 99 (110)
Q Consensus 97 R~~ 99 (110)
...
T Consensus 494 i~~ 496 (871)
T KOG1968|consen 494 IRS 496 (871)
T ss_pred HHh
Confidence 763
No 324
>COG1485 Predicted ATPase [General function prediction only]
Probab=67.57 E-value=9.1 Score=28.92 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=27.1
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC-CCCCc
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP-DIIDP 75 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~-~~ld~ 75 (110)
-++.|||+.-- + -...-+++.|+..|= ..+|++|+|+|.+ ++|=+
T Consensus 132 ~vLCfDEF~Vt-------D----I~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 132 RVLCFDEFEVT-------D----IADAMILGRLLEALF----ARGVVLVATSNTAPDNLYK 177 (367)
T ss_pred CEEEeeeeeec-------C----hHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcc
Confidence 58999998721 1 012335555555442 3588999999954 55443
No 325
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.53 E-value=8.4 Score=26.04 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+=+ +......+.+++..+. ...+..+|.+|++++.+
T Consensus 139 l~la~al~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 194 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSAL----------DAKLREELREELKELQ---RELGITTIYVTHDQEEA 194 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHHH
Confidence 45666777889999999965322 1123333334443332 22234566777776543
No 326
>PF13175 AAA_15: AAA ATPase domain
Probab=67.52 E-value=16 Score=26.87 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=27.4
Q ss_pred EEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 17 VLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 17 ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
|++|||-|+-+.. ..-..|+..+..+....++=||.||+.|.-
T Consensus 372 illidEPE~~LHp-------------~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 372 ILLIDEPELHLHP-------------QAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred EEEEeCccccCCH-------------HHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 9999999866422 223334444444444556678899998753
No 327
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=67.47 E-value=18 Score=24.28 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCeEEEEccccc
Q psy13774 4 ATGASMARAAAPCVLFFDELDS 25 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~ 25 (110)
+-.+..|-...|.++++||--+
T Consensus 119 rv~laral~~~p~illlDEP~~ 140 (194)
T cd03213 119 RVSIALELVSNPSLLFLDEPTS 140 (194)
T ss_pred HHHHHHHHHcCCCEEEEeCCCc
Confidence 3456677778999999999663
No 328
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.32 E-value=7.9 Score=26.64 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-.+..|-...|.|+++||--+=+ +......+..++..+. ...+..||.+|++++.
T Consensus 144 rv~ia~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tvi~vsH~~~~ 199 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGL----------DPIASGVIDDLIRSLK---KELGLTSIMVTHDLDT 199 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccC----------CHHHHHHHHHHHHHHH---HhcCcEEEEEecCHHH
Confidence 345667777889999999955221 1123333434444332 2223456667776654
No 329
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=67.26 E-value=7.3 Score=26.79 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.|+++||--+-+ +......+..++..+ ....+..+|.+|++++.+
T Consensus 134 v~laral~~~p~vllLDEPt~~L----------D~~~~~~l~~~l~~~---~~~~~~tiii~sH~~~~~ 189 (230)
T TIGR02770 134 VMIALALLLEPPFLIADEPTTDL----------DVVNQARVLKLLREL---RQLFGTGILLITHDLGVV 189 (230)
T ss_pred HHHHHHHhcCCCEEEEcCCcccc----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 35666777889999999965322 112333333344333 223334666777766543
No 330
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=66.94 E-value=7.5 Score=27.42 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 155 rv~laral~~~p~lllLDEPt~~L----------D~~~~~~~~~~l~~l~---~~~~~tiii~sH~~~~i 211 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSAL----------DIAHQVDVLALVHRLS---QERGLTVIAVLHDINMA 211 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 445677888899999999965322 1133344444444442 22234566777776543
No 331
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.92 E-value=5.9 Score=28.37 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 158 rv~laral~~~p~lLlLDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tiiiisH~~~~~ 214 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGL----------DPKGEEDFINLFERLN---KEYKKRIIMVTHNMDQV 214 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 345667778899999999965322 1123334444444332 22344677777776543
No 332
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=66.85 E-value=22 Score=23.08 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 90 rl~laral~~~p~illlDEP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~ 145 (163)
T cd03216 90 MVEIARALARNARLLILDEPTAAL----------TPAEVERLFKVIRRLR---AQ-GVAVIFISHRLDEV 145 (163)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 445677778899999999965322 1133344444444442 22 34566677776544
No 333
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=66.82 E-value=29 Score=24.77 Aligned_cols=51 Identities=25% Similarity=0.265 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn 68 (110)
+-+.++|-+..|.||++||-=+-+ +..+..-+.+++.++..- =.+||.|-|
T Consensus 157 RLcIARalAv~PeVlLmDEPtSAL----------DPIsT~kIEeLi~eLk~~----yTIviVTHn 207 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSAL----------DPISTLKIEELITELKKK----YTIVIVTHN 207 (253)
T ss_pred HHHHHHHHhcCCcEEEecCccccc----------CchhHHHHHHHHHHHHhc----cEEEEEeCC
Confidence 345677888999999999954221 113444555666666532 225666644
No 334
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=66.81 E-value=6.2 Score=25.28 Aligned_cols=14 Identities=14% Similarity=0.263 Sum_probs=11.3
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
..+|++||+|.+..
T Consensus 130 ~~~iIiDE~h~~~~ 143 (201)
T smart00487 130 VDLVILDEAHRLLD 143 (201)
T ss_pred CCEEEEECHHHHhc
Confidence 45899999998854
No 335
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=66.77 E-value=9.4 Score=29.76 Aligned_cols=56 Identities=23% Similarity=0.223 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+-+ +......+..++..+. ...+..||.+|++++.+
T Consensus 165 v~iAraL~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~~ 220 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTAL----------DVSVQAQILQLLRELQ---QELNMGLLFITHNLSIV 220 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcc----------CHHHHHHHHHHHHHHH---HhcCCeEEEEcCcHHHH
Confidence 45677778899999999965322 1123334444444432 22244677778877654
No 336
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=66.72 E-value=16 Score=25.27 Aligned_cols=23 Identities=13% Similarity=-0.060 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCeEEEEcccccc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSI 26 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l 26 (110)
..+.+.+....|.+|+||.+-.+
T Consensus 101 ~~l~~~~~~~~~~lvviDpl~~~ 123 (239)
T cd01125 101 ERIIEQLLIRRIDLVVIDPLVSF 123 (239)
T ss_pred HHHHHHHHhcCCCEEEECChHHh
Confidence 34455566678999999987766
No 337
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.67 E-value=9.1 Score=27.46 Aligned_cols=56 Identities=18% Similarity=0.116 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-++..|-...|.|+++||--+-+ +......+..++..+. .. +.-||.+|++++.+
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gL----------D~~~~~~l~~~l~~l~---~~-g~til~vtHd~~~~ 207 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGL----------DPKARIEMMQLFESIH---QS-GQTVVLVTHLMDDV 207 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHH
Confidence 345667778899999999965332 1133444444444443 22 44677777776543
No 338
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=66.64 E-value=11 Score=26.09 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=30.3
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
.+..|-...|.++++||-..=+ +......+..++..+ ....+..+|.+|++++.+
T Consensus 140 ~laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~---~~~~~~tvli~sH~~~~~ 194 (237)
T TIGR00968 140 ALARALAVEPQVLLLDEPFGAL----------DAKVRKELRSWLRKL---HDEVHVTTVFVTHDQEEA 194 (237)
T ss_pred HHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 4555666789999999966321 113334444444443 223244566666666543
No 339
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.58 E-value=11 Score=26.83 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-.+..|-...|.++++||--
T Consensus 148 rv~laral~~~p~lllLDEPt 168 (279)
T PRK13635 148 RVAIAGVLALQPDIIILDEAT 168 (279)
T ss_pred HHHHHHHHHcCCCEEEEeCCc
Confidence 446777888999999999965
No 340
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=66.54 E-value=6.1 Score=30.93 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=11.0
Q ss_pred CCeEEEEcccccc
Q psy13774 14 APCVLFFDELDSI 26 (110)
Q Consensus 14 ~P~ii~iDeiD~l 26 (110)
....+||||+|.+
T Consensus 290 ~~GtL~ldei~~L 302 (534)
T TIGR01817 290 DGGTLFLDEIGEI 302 (534)
T ss_pred CCCeEEEechhhC
Confidence 3578999999988
No 341
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=66.45 E-value=7.1 Score=27.63 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. ...+..+|.+|++.+.+
T Consensus 151 rv~laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~~g~tiiivsH~~~~~ 207 (269)
T PRK11831 151 RAALARAIALEPDLIMFDEPFVGQ----------DPITMGVLVKLISELN---SALGVTCVVVSHDVPEV 207 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccC----------CHHHHHHHHHHHHHHH---HhcCcEEEEEecCHHHH
Confidence 345666777889999999954221 1123334444444432 23344666777765433
No 342
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=66.21 E-value=48 Score=24.08 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=47.2
Q ss_pred HhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC-C---ccccCCCccceE
Q psy13774 11 RAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII-D---PAILRPGRLDQL 86 (110)
Q Consensus 11 ~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l-d---~al~r~grfd~~ 86 (110)
+...|.++++||++.+..+ .-..+.-|.+.-.+....-+++.+|-..--..+ - ..+.+ |++..
T Consensus 128 ~g~r~v~l~vdEah~L~~~-----------~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir 194 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDS-----------ALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIR 194 (269)
T ss_pred hCCCCeEEeehhHhhhChh-----------HHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEE
Confidence 3456799999999988422 112222333333333233457777754321111 1 13345 78888
Q ss_pred EEecCCCHHHHHHHHHHHhhc
Q psy13774 87 IYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 87 i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|++++-+.++-..++++.++.
T Consensus 195 ~~l~P~~~~~t~~yl~~~Le~ 215 (269)
T COG3267 195 IELPPLTEAETGLYLRHRLEG 215 (269)
T ss_pred EecCCcChHHHHHHHHHHHhc
Confidence 888888888666666666543
No 343
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.12 E-value=13 Score=26.23 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+. ......+..++..+ ....+..+|.+|++++.+
T Consensus 150 rl~laral~~~p~lllLDEPt~~LD----------~~~~~~l~~~L~~~---~~~~~~tiiivtH~~~~~ 206 (269)
T PRK13648 150 RVAIAGVLALNPSVIILDEATSMLD----------PDARQNLLDLVRKV---KSEHNITIISITHDLSEA 206 (269)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCC----------HHHHHHHHHHHHHH---HHhcCCEEEEEecCchHH
Confidence 3456677788999999999764321 12333444444433 223234566677776644
No 344
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=65.74 E-value=11 Score=25.35 Aligned_cols=55 Identities=16% Similarity=0.066 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
-.+..|-...|.++++||--+=+ +......+..++..+. .+.+..+|.+|++++.
T Consensus 139 ~~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tvi~~sH~~~~ 193 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNL----------DAKLRVQMRAELKRLQ---QRLGTTTIYVTHDQVE 193 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH
Confidence 35667778899999999965322 1123334444444432 2223466677776643
No 345
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.73 E-value=11 Score=25.86 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
-.+..|-...|.|+++||--+-+ +......+..++..+ ....+..+|.+|++++.+.
T Consensus 153 v~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~---~~~~~~tii~~tH~~~~~~ 209 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASL----------DPASSRQVMDLLKRI---NREEGITVIVSLHQVDLAR 209 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 34566777889999999965322 112333333444333 2222345677777765443
No 346
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.50 E-value=13 Score=24.32 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+-+. ......+.+++..+. .. +..+|.+|++++.+
T Consensus 104 v~laral~~~p~illlDEPt~~LD----------~~~~~~l~~~l~~~~---~~-g~tiii~th~~~~~ 158 (173)
T cd03230 104 LALAQALLHDPELLILDEPTSGLD----------PESRREFWELLRELK---KE-GKTILLSSHILEEA 158 (173)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCC----------HHHHHHHHHHHHHHH---HC-CCEEEEECCCHHHH
Confidence 356677788999999999764321 123334444444432 22 33566677765533
No 347
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=65.47 E-value=8 Score=27.06 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+=+. ......+..++..+. ...+..+|.+|++++.+
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD----------~~~~~~l~~~L~~~~---~~~g~til~~sH~~~~~ 204 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLD----------VVAQARILDLLESIV---QKRALGMLLVTHDMGVV 204 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccC----------HHHHHHHHHHHHHHH---HhcCcEEEEEecCHHHH
Confidence 356677788999999999663321 123334444444332 22344666777776543
No 348
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=65.33 E-value=7.3 Score=27.46 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+ ....+..+|.+|++++.+
T Consensus 158 rv~laral~~~p~illLDEPt~~L----------D~~~~~~l~~~l~~~---~~~~g~tiiivsH~~~~~ 214 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNL----------DMVLQAVILELLRKL---QQAFGTAYLFITHDLRLV 214 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHH---HHhcCcEEEEEeCCHHHH
Confidence 345667778899999999965221 112233333333333 222244677777776644
No 349
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.28 E-value=9.7 Score=26.79 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+-++..|-...|.++++||--+=+ +......+..++..+. ...+..+|.+|++++.+.
T Consensus 158 rv~laral~~~p~vllLDEP~~~L----------D~~~~~~l~~~l~~l~---~~~~~tiiivsH~~~~i~ 215 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGL----------DPIASMKVESLIQSLR---LRSELTMVIVSHNLHQVS 215 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEECCHHHHH
Confidence 345566667889999999965322 1123333334443332 222345666777776543
No 350
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=65.20 E-value=25 Score=23.88 Aligned_cols=58 Identities=9% Similarity=-0.005 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP 75 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~ 75 (110)
+-.+..|-...|.++++||--+=+ +......+.+++..+. .. +..+|.+|++.+.++.
T Consensus 145 rv~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANL----------DLEGITLVNRMISAHL---RG-GGAALVTTHGAYAAPP 202 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEecChhhhhh
Confidence 345667777899999999966322 1134445555554442 22 2356678887776664
No 351
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=65.13 E-value=24 Score=28.70 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=28.7
Q ss_pred CEEEEEecCCC--CCCCccccCCCccc---eEEEec--CCC-HHHHHHHHHHHh
Q psy13774 60 NVFIIGATNRP--DIIDPAILRPGRLD---QLIYIP--LPD-EIWLILSDKFLY 105 (110)
Q Consensus 60 ~v~vi~ttn~~--~~ld~al~r~grfd---~~i~~~--~P~-~~~R~~~~~~~~ 105 (110)
++.+|+++|.. ..+||+|.. ||. ..+++. .|+ .+.+..+.+++.
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~ia 328 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVA 328 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHH
Confidence 56788888875 678999998 986 556654 233 344555555433
No 352
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.10 E-value=19 Score=24.00 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
+-.+..|-...|.++++||--+-+. ......+.+++..+. .. +..+|.+|++++
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD----------~~~~~~l~~~l~~~~---~~-~~tiiivtH~~~ 169 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLD----------SQAAYNIVRFLKKLA---DS-GQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCC----------HHHHHHHHHHHHHHH---Hc-CCEEEEEEcCCh
Confidence 3456777788999999999663321 123333334444332 22 345666777654
No 353
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=65.09 E-value=8.9 Score=28.61 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=32.7
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
..++|-++.|.|++.||+=+-+. .. ...++|..+.+++..-++-++.-|+..+
T Consensus 151 aIARALa~~P~iLL~DEaTSALD----------P~---TT~sIL~LL~~In~~lglTIvlITHEm~ 203 (339)
T COG1135 151 AIARALANNPKILLCDEATSALD----------PE---TTQSILELLKDINRELGLTIVLITHEME 203 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCC----------hH---HHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 46778889999999999763321 12 2333444444444556666666666654
No 354
>PRK06526 transposase; Provisional
Probab=64.98 E-value=13 Score=26.49 Aligned_cols=14 Identities=29% Similarity=0.308 Sum_probs=11.3
Q ss_pred cCCeEEEEcccccc
Q psy13774 13 AAPCVLFFDELDSI 26 (110)
Q Consensus 13 ~~P~ii~iDeiD~l 26 (110)
..+.+|+|||++.+
T Consensus 158 ~~~dlLIIDD~g~~ 171 (254)
T PRK06526 158 GRYPLLIVDEVGYI 171 (254)
T ss_pred ccCCEEEEcccccC
Confidence 34689999999966
No 355
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=64.92 E-value=18 Score=24.72 Aligned_cols=51 Identities=20% Similarity=0.105 Sum_probs=27.6
Q ss_pred HhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 11 RAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 11 ~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
....|+++++||.-.=. + ......+...++..+... +..+|.+|+..+.++
T Consensus 105 ~~~~~~lvllDE~~~gt------~---~~~~~~l~~~il~~l~~~----~~~~i~~TH~~~l~~ 155 (204)
T cd03282 105 YADGDSLVLIDELGRGT------S---SADGFAISLAILECLIKK----ESTVFFATHFRDIAA 155 (204)
T ss_pred hcCCCcEEEeccccCCC------C---HHHHHHHHHHHHHHHHhc----CCEEEEECChHHHHH
Confidence 34679999999975211 0 001222333445444432 446677888766544
No 356
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=64.86 E-value=15 Score=25.68 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+-++..|-...|.|+++||--+-+. ......+..++..+ ....+..+|.+|++.+.+.
T Consensus 159 rl~laral~~~p~llllDEPt~~LD----------~~~~~~l~~~l~~~---~~~~~~tii~isH~~~~~~ 216 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLD----------VSVQARLLDLLRGL---VRELGLAVVIVTHDLAVAR 216 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCC----------HHHHHHHHHHHHHH---HHhcCcEEEEEeCCHHHHH
Confidence 3456677788999999999663321 12233333333333 2233456777788776543
No 357
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.82 E-value=8.8 Score=26.42 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-++..|-...|.++++||-.+=+ +......+..++..+. ...+.-+|.+|++++.
T Consensus 138 rl~laral~~~p~llllDEP~~gL----------D~~~~~~l~~~l~~~~---~~~~~tiii~sh~~~~ 193 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGAL----------DLKLRKDMQLELKRLQ---KELGITFVFVTHDQEE 193 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH
Confidence 345666777889999999976322 1123334444444432 2223455566666544
No 358
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=64.54 E-value=13 Score=31.15 Aligned_cols=67 Identities=16% Similarity=0.054 Sum_probs=43.5
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC------ccccCCCccceE
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID------PAILRPGRLDQL 86 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld------~al~r~grfd~~ 86 (110)
..|.+|+|||+..++... .....+..++..+. ..+..++.+|..++++. .+++. ..+..
T Consensus 664 grr~iiviDEaW~lL~~p---------~~a~fi~~~~kt~R----K~ng~~i~iTQs~~Dll~s~i~a~aIi~--ns~tk 728 (829)
T TIGR03783 664 GVRKMILIEEAWKAIASA---------NMAEYIKYLYKTVR----KYFGEAIVVTQEVDDIISSPIVKESIIN--NSDCK 728 (829)
T ss_pred CCcEEEEEeCHHHHhCCH---------HHHHHHHHHHHHHh----hcCCEEEEEcCCHHHHhcChHHHHHHHH--hCCEE
Confidence 468999999999887422 23334444443333 34447778888887665 25666 77889
Q ss_pred EEecCCCH
Q psy13774 87 IYIPLPDE 94 (110)
Q Consensus 87 i~~~~P~~ 94 (110)
|.++-+..
T Consensus 729 IlL~q~~~ 736 (829)
T TIGR03783 729 ILLDQRKY 736 (829)
T ss_pred EEeCCcch
Confidence 99887764
No 359
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=64.52 E-value=28 Score=23.24 Aligned_cols=55 Identities=11% Similarity=0.040 Sum_probs=31.4
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
....|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|+++..+.
T Consensus 137 ~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 137 ALARLWLSRAPLWILDEPTTAL----------DKAGVALLAGLLRAHL---AR-GGIVLLTTHQDLGLV 191 (198)
T ss_pred HHHHHHhcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEEccccccc
Confidence 4556667889999999966322 1123334444444332 22 335777777775544
No 360
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=64.51 E-value=7.5 Score=27.47 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.|+++||--+-+. ......+.+++..+ ....+..+|.+|++++.+
T Consensus 158 v~laral~~~p~lllLDEPt~~LD----------~~~~~~l~~~l~~~---~~~~g~tviivsH~~~~~ 213 (267)
T PRK15112 158 LGLARALILRPKVIIADEALASLD----------MSMRSQLINLMLEL---QEKQGISYIYVTQHLGMM 213 (267)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCC----------HHHHHHHHHHHHHH---HHHcCcEEEEEeCCHHHH
Confidence 456667778999999999663321 12333333444333 222234566677776544
No 361
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=64.39 E-value=13 Score=26.31 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 150 rl~laral~~~p~lllLDEP~~gL----------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 150 RVAIASVLALNPEIIIFDESTSML----------DPKGKREIKKIMVDLR---KTRKKTLISITHDMDEA 206 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCcEEEEEEechhHH
Confidence 345667778899999999965322 1123333334443332 22334566667766544
No 362
>PHA00350 putative assembly protein
Probab=64.32 E-value=4.5 Score=30.90 Aligned_cols=72 Identities=18% Similarity=0.021 Sum_probs=41.9
Q ss_pred CCeEEEEcccccccccCCCCCCCC-----CCch----HHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDG-----GGAA----DRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLD 84 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~-----~~~~----~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd 84 (110)
.-++|+|||+..+++++..-+... .+.. ...-..++..+..- ...+.=|+..|.++..||..++. +.+
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~H-RH~G~DIiliTQ~~~~Id~~iR~--lvE 157 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRH-RHYNWDIILLTPNIRKIHSDIRA--MIE 157 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHh-cccCceEEEEeCCHHHhhHHHHH--hhh
Confidence 447999999999998874411000 0000 00011233333321 33456688899999999998886 777
Q ss_pred eEEE
Q psy13774 85 QLIY 88 (110)
Q Consensus 85 ~~i~ 88 (110)
..+.
T Consensus 158 ~~~~ 161 (399)
T PHA00350 158 MTYY 161 (399)
T ss_pred heEE
Confidence 6443
No 363
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=64.23 E-value=7.2 Score=27.61 Aligned_cols=57 Identities=16% Similarity=0.099 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+. ......+.+++..+ ....+..+|.+|++++.+
T Consensus 159 rl~laral~~~p~lllLDEPt~~LD----------~~~~~~~~~~l~~~---~~~~~~tiiivsH~~~~i 215 (268)
T PRK10419 159 RVCLARALAVEPKLLILDEAVSNLD----------LVLQAGVIRLLKKL---QQQFGTACLFITHDLRLV 215 (268)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccC----------HHHHHHHHHHHHHH---HHHcCcEEEEEECCHHHH
Confidence 4456777788999999999653221 12233333333333 222244666777776543
No 364
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.17 E-value=11 Score=25.99 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+. ...+..+|.+|++++.
T Consensus 144 rl~la~al~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~---~~~~~tvii~sH~~~~ 199 (239)
T cd03296 144 RVALARALAVEPKVLLLDEPFGAL----------DAKVRKELRRWLRRLH---DELHVTTVFVTHDQEE 199 (239)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH
Confidence 345666777889999999965332 1123334444444432 2223456677777653
No 365
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.11 E-value=11 Score=25.51 Aligned_cols=57 Identities=23% Similarity=0.134 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. ...+..+|.+|++.+.+
T Consensus 139 rv~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 139 RVALARALAAQPELLLLDEPFSAL----------DRALRLQLLPELKQIK---KNLNIPVIFVTHDLSEA 195 (214)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---HHcCcEEEEEecCHHHH
Confidence 345667778899999999955221 1123333434443332 22234566777776544
No 366
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=64.07 E-value=12 Score=25.51 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCeEEEEccccc
Q psy13774 4 ATGASMARAAAPCVLFFDELDS 25 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~ 25 (110)
+-.+..|-...|.++++||--+
T Consensus 149 rv~laral~~~p~illlDEP~~ 170 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTA 170 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCC
Confidence 3456667778899999999764
No 367
>PRK04296 thymidine kinase; Provisional
Probab=63.95 E-value=36 Score=22.79 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=14.5
Q ss_pred HHHHHHHH--hcCCeEEEEcccccc
Q psy13774 4 ATGASMAR--AAAPCVLFFDELDSI 26 (110)
Q Consensus 4 ~~~F~~A~--~~~P~ii~iDeiD~l 26 (110)
.+++..++ ...+.+|+|||+..+
T Consensus 66 ~~~~~~~~~~~~~~dvviIDEaq~l 90 (190)
T PRK04296 66 TDIFELIEEEGEKIDCVLIDEAQFL 90 (190)
T ss_pred HHHHHHHHhhCCCCCEEEEEccccC
Confidence 34444443 346689999999543
No 368
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=63.57 E-value=12 Score=26.22 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 160 rv~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~g~tvii~tH~~~~~ 216 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASL----------DPESARIVMDTLRDIN---QNDGITVVVTLHQVDYA 216 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 345667778899999999966332 1123334444444432 22244677777777643
No 369
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=63.56 E-value=8.9 Score=26.96 Aligned_cols=57 Identities=9% Similarity=0.128 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-++..|-...|.++++||--+-+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 128 rv~laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~L~~~~---~~~g~tiiivsH~~~~i 184 (251)
T PRK09544 128 RVLLARALLNRPQLLVLDEPTQGV----------DVNGQVALYDLIDQLR---RELDCAVLMVSHDLHLV 184 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 345677778899999999965322 1123333434443332 22234566677776644
No 370
>KOG1969|consensus
Probab=63.52 E-value=54 Score=27.54 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=23.7
Q ss_pred EEEEecCCCCCCCccccCCCccceEEEecCCCHHH
Q psy13774 62 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEIW 96 (110)
Q Consensus 62 ~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~~ 96 (110)
-||+.+| +..-|||+.=--|...|+|.+|....
T Consensus 440 PIICICN--dLYaPaLR~Lr~~A~ii~f~~p~~s~ 472 (877)
T KOG1969|consen 440 PIICICN--DLYAPALRPLRPFAEIIAFVPPSQSR 472 (877)
T ss_pred CEEEEec--CccchhhhhcccceEEEEecCCChhH
Confidence 4677788 45668887444788899998877554
No 371
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=63.47 E-value=8.3 Score=26.37 Aligned_cols=61 Identities=8% Similarity=0.144 Sum_probs=35.6
Q ss_pred Hhc-CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 11 RAA-APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 11 ~~~-~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
.+. .+.+|+||-+.+++......... .....+.+..++..+..+....++.|+.+......
T Consensus 111 ~~~~~~~liVIDSis~~~~~~~~~~~~-~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~~ 172 (235)
T cd01123 111 IESSRIKLVIVDSVTALFRAEFDGRGE-LAERQQHLAKLLRTLKRLADEFNVAVVITNQVTAR 172 (235)
T ss_pred hhcCCeeEEEEeCcHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEeec
Confidence 345 88999999999986432111110 01233456666777766655667777776544333
No 372
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=63.30 E-value=11 Score=27.10 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-.+..|-.+.|.++++||--
T Consensus 132 rv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 132 RLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred HHHHHHHHhcCCCEEEEeCCC
Confidence 446777888899999999954
No 373
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=63.29 E-value=18 Score=26.54 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-++..|-...|.+|++||--+-+ +..... .++..+..+....+.-+|.+|++...+
T Consensus 166 Rv~iArAL~~~P~llilDEPts~L----------D~~~~~---~i~~lL~~l~~~~g~tii~itHdl~~v 222 (330)
T PRK15093 166 KVMIAIALANQPRLLIADEPTNAM----------EPTTQA---QIFRLLTRLNQNNNTTILLISHDLQML 222 (330)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCcC----------CHHHHH---HHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 445677888999999999955322 112222 333444443333355677777776433
No 374
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=63.27 E-value=12 Score=27.54 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-+...|-...|.+|++||--+-+ ......+++..+..+....+.-+|..|++...+
T Consensus 161 Rv~iArAL~~~P~llilDEPts~L-------------D~~~~~~il~lL~~l~~~~g~til~iTHdl~~~ 217 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTAL-------------DVTIQAQIIELLLELQQKENMALVLITHDLALV 217 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCC-------------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 456677888899999999965322 111222344444444333455677777776543
No 375
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.24 E-value=13 Score=25.29 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. ...+..+|.+|++++.
T Consensus 139 rl~la~al~~~p~lllLDEPt~~L----------D~~~~~~~~~~l~~~~---~~~~~tiii~sH~~~~ 194 (220)
T cd03293 139 RVALARALAVDPDVLLLDEPFSAL----------DALTREQLQEELLDIW---RETGKTVLLVTHDIDE 194 (220)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHH
Confidence 345667777899999999955321 1133344444444332 2223456677777653
No 376
>KOG0481|consensus
Probab=63.14 E-value=6.9 Score=31.34 Aligned_cols=45 Identities=31% Similarity=0.383 Sum_probs=26.8
Q ss_pred CCCEEEEEecCCC-----------CCCC--ccccCCCccceEEEecC-CCHHHHHHHHHHH
Q psy13774 58 KKNVFIIGATNRP-----------DIID--PAILRPGRLDQLIYIPL-PDEIWLILSDKFL 104 (110)
Q Consensus 58 ~~~v~vi~ttn~~-----------~~ld--~al~r~grfd~~i~~~~-P~~~~R~~~~~~~ 104 (110)
+.+.-|+|+.|.+ ++|| |.+++ |||..+-+.- -++..=..+.++.
T Consensus 469 NSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHV 527 (729)
T KOG0481|consen 469 NSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHV 527 (729)
T ss_pred cchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHh
Confidence 3456677887754 3555 78999 9998766643 3332223444443
No 377
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=63.03 E-value=25 Score=24.22 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=10.8
Q ss_pred hcCCeEEEEcccc
Q psy13774 12 AAAPCVLFFDELD 24 (110)
Q Consensus 12 ~~~P~ii~iDeiD 24 (110)
...|+++++||.-
T Consensus 107 ~~~~~llllDEp~ 119 (216)
T cd03284 107 ATERSLVLLDEIG 119 (216)
T ss_pred CCCCeEEEEecCC
Confidence 4689999999973
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=62.98 E-value=38 Score=23.62 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=30.5
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEec
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 90 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~ 90 (110)
..|.++++||-.+-+.. .....+...+..+.. +.-+|.+|+++ .+.. ..|+.|.+.
T Consensus 187 ~~~~illlDEPt~~ld~-------------~~~~~~~~~l~~~~~--g~~ii~iSH~~-----~~~~--~~d~v~~~~ 242 (251)
T cd03273 187 KPAPMYILDEVDAALDL-------------SHTQNIGRMIKTHFK--GSQFIVVSLKE-----GMFN--NANVLFRTR 242 (251)
T ss_pred cCCCEEEEeCCCcCCCH-------------HHHHHHHHHHHHHcC--CCEEEEEECCH-----HHHH--hCCEEEEEE
Confidence 45789999997743311 122233344443322 34677788873 3443 456666554
No 379
>PHA00520 packaging NTPase P4
Probab=62.95 E-value=9.4 Score=28.22 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=42.5
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR 69 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~ 69 (110)
..-|||++|-+-.+...-.++-. ++...+..-.+|+.++.+..+.+++||++-|-
T Consensus 182 l~v~VvvvDSlr~vl~~~~Gnat--sGGISr~~~~~LTdl~~iaas~gc~vV~~lNP 236 (330)
T PHA00520 182 LDVDVVVVDSLRNVLFELGGNAT--SGGISRGAYGLLTDLGNIAASRGCRVVATLNP 236 (330)
T ss_pred hhceEEEEechHHHHhhhccCCC--CCcchHHHHHHHHHHHHHHHHcCcEEEEEcCC
Confidence 44689999999888765544332 33677888899999999888889999998775
No 380
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=62.87 E-value=30 Score=24.07 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCeEEEEccccccc
Q psy13774 5 TGASMARAAAPCVLFFDELDSIA 27 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~ 27 (110)
.+.+.+....|.++++||+-.+.
T Consensus 108 ~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 108 KLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHhcCCCEEEEECccHHh
Confidence 44555556689999999998875
No 381
>KOG0479|consensus
Probab=62.54 E-value=17 Score=29.63 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=38.9
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhh------hcCCC--CCCEEEEEecCCCC-------------CC
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEM------DGMGA--KKNVFIIGATNRPD-------------II 73 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~l------d~~~~--~~~v~vi~ttn~~~-------------~l 73 (110)
..||.|||+|.+.. ..+-.+.+...+- .|+.. +.++-|+|+.|-.. .+
T Consensus 399 RGVVCIDEFDKMsD-----------iDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgL 467 (818)
T KOG0479|consen 399 RGVVCIDEFDKMSD-----------IDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGL 467 (818)
T ss_pred CceEEehhcccccc-----------hhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCC
Confidence 46999999998731 1122333333221 12222 45788999998654 57
Q ss_pred CccccCCCccceEEEe
Q psy13774 74 DPAILRPGRLDQLIYI 89 (110)
Q Consensus 74 d~al~r~grfd~~i~~ 89 (110)
+.+|++ |||..+-+
T Consensus 468 pDSLLS--RFDLlFv~ 481 (818)
T KOG0479|consen 468 PDSLLS--RFDLLFVV 481 (818)
T ss_pred cHHHHh--hhcEEEEE
Confidence 889999 99975444
No 382
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=62.36 E-value=24 Score=23.56 Aligned_cols=66 Identities=11% Similarity=0.091 Sum_probs=36.0
Q ss_pred HHHHHHHHhcC--CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 4 ATGASMARAAA--PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 4 ~~~F~~A~~~~--P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+-.+..|-... |.++++||--+-+.. .....+.+++ ..+.. .+..||.+|++++.+ +
T Consensus 95 rl~laral~~~~~p~llLlDEPt~~LD~----------~~~~~l~~~l---~~~~~-~g~tvIivSH~~~~~-----~-- 153 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPSTGLHQ----------QDINQLLEVI---KGLID-LGNTVILIEHNLDVL-----S-- 153 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCcccCCH----------HHHHHHHHHH---HHHHh-CCCEEEEEeCCHHHH-----H--
Confidence 34566677778 999999996532211 2223333333 33322 234566677776532 3
Q ss_pred ccceEEEec
Q psy13774 82 RLDQLIYIP 90 (110)
Q Consensus 82 rfd~~i~~~ 90 (110)
..|+.+.+.
T Consensus 154 ~~d~i~~l~ 162 (176)
T cd03238 154 SADWIIDFG 162 (176)
T ss_pred hCCEEEEEC
Confidence 456666663
No 383
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=62.13 E-value=15 Score=27.29 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-...+|-...|.++++||--+-+ +...... ++..+..+....+.-+|.+|+..+.+
T Consensus 149 V~IARAL~~~P~iLLlDEPts~L----------D~~t~~~---i~~lL~~l~~~~g~tiiliTH~~~~v 204 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSAL----------DPATTQS---ILELLKEINRRLGLTILLITHEMDVV 204 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccC----------CHHHHHH---HHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45667778899999999965322 1122333 33333333333345677788876543
No 384
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.94 E-value=8.9 Score=24.60 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=31.0
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
.+..|-...|.++++||...=+.. .....+..++..+. .. +..++.+|++++.++
T Consensus 90 ~l~~~l~~~~~i~ilDEp~~~lD~----------~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 90 ALARALLLNPDLLLLDEPTSGLDP----------ASRERLLELLRELA---EE-GRTVIIVTHDPELAE 144 (157)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCH----------HHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 455666778999999997743211 22333334443332 22 335677777766554
No 385
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.88 E-value=12 Score=25.95 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 143 rv~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~L~~~~---~~~g~tvii~sH~~~~~ 199 (242)
T cd03295 143 RVGVARALAADPPLLLMDEPFGAL----------DPITRDQLQEEFKRLQ---QELGKTIVFVTHDIDEA 199 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHHH
Confidence 345667778899999999965321 1123334444444432 22234677777777643
No 386
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=61.81 E-value=15 Score=25.97 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=31.2
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+++-+-+..|.|+++||-=+-. +....+. ++..+..+....+.-+|..|++.+.+.
T Consensus 148 aIA~vLa~~P~iliLDEPta~L----------D~~~~~~---l~~~l~~L~~~~~~tii~~tHd~~~~~ 203 (235)
T COG1122 148 AIAGVLAMGPEILLLDEPTAGL----------DPKGRRE---LLELLKKLKEEGGKTIIIVTHDLELVL 203 (235)
T ss_pred HhhHHHHcCCCEEEEcCCCCCC----------CHHHHHH---HHHHHHHHHhcCCCeEEEEeCcHHHHH
Confidence 4566778899999999944322 1123333 334444443444445556666655443
No 387
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=61.76 E-value=15 Score=24.68 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 142 rv~laral~~~p~llllDEPt~~L----------D~~~~~~~~~~l~~~~---~~-~~tvi~~sH~~~~~ 197 (211)
T cd03225 142 RVAIAGVLAMDPDILLLDEPTAGL----------DPAGRRELLELLKKLK---AE-GKTIIIVTHDLDLL 197 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHH
Confidence 345667777889999999965321 1123334444444432 22 44677777776544
No 388
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.75 E-value=12 Score=25.87 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-++..|-...|.++++||--+=+ +......+..++..+. ...+.-++.+|++++.+
T Consensus 137 rl~laral~~~p~llllDEPt~gL----------D~~~~~~l~~~l~~~~---~~~~~tili~tH~~~~~ 193 (235)
T cd03299 137 RVAIARALVVNPKILLLDEPFSAL----------DVRTKEKLREELKKIR---KEFGVTVLHVTHDFEEA 193 (235)
T ss_pred HHHHHHHHHcCCCEEEECCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 456677778899999999965322 1133444444444432 22234566666666543
No 389
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.72 E-value=32 Score=23.54 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+-+.. ..... +.+.+..+.. +..+|.+|++++.+
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~----------~~~~~---l~~~l~~~~~--~~tiii~sh~~~~~ 199 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDT----------HTERE---IQAALRDVSK--GRTTIVIAHRLSTI 199 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCH----------HHHHH---HHHHHHHhcC--CCEEEEEcCCHHHH
Confidence 3566677889999999996633211 22233 3333333323 34566777776554
No 390
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=61.67 E-value=21 Score=23.87 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
+-.+..|-...|.++++||--+-+ +......+.+++..+. .. +..+|.+|++++
T Consensus 142 r~~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~ 195 (206)
T TIGR03608 142 RVALARAILKDPPLILADEPTGSL----------DPKNRDEVLDLLLELN---DE-GKTIIIVTHDPE 195 (206)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCC----------CHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHH
Confidence 345667778899999999976432 1133344444444442 22 335566777664
No 391
>PRK13695 putative NTPase; Provisional
Probab=61.31 E-value=25 Score=22.99 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=9.3
Q ss_pred CCeEEEEcccc
Q psy13774 14 APCVLFFDELD 24 (110)
Q Consensus 14 ~P~ii~iDeiD 24 (110)
.|.++++||+.
T Consensus 96 ~~~~lllDE~~ 106 (174)
T PRK13695 96 EADVIIIDEIG 106 (174)
T ss_pred CCCEEEEECCC
Confidence 58899999964
No 392
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.31 E-value=13 Score=25.50 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+ ....+..+|.+|++++.+
T Consensus 148 rv~la~al~~~p~lllLDEP~~~L----------D~~~~~~l~~~l~~~---~~~~~~tvii~sH~~~~~ 204 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSAL----------DPETTQSILALLRDI---NRELGLTIVLITHEMEVV 204 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcC----------CHHHHHHHHHHHHHH---HHHcCCEEEEEeCCHHHH
Confidence 345666777889999999955221 112333444444433 223244667777766543
No 393
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=61.21 E-value=3.1 Score=28.04 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=29.7
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
..+-+++|||...+........ .......+..+... ....++.+|.+|.+|+
T Consensus 153 ~~~i~~~iDe~~~l~~~~~~~~---~~~~~~~l~~i~~~----gR~~Gi~li~~~Q~p~ 204 (205)
T PF01580_consen 153 LPPIFIVIDEFAALRDSAPDDS---KKEIMDLLARIARK----GRAAGIHLILATQRPS 204 (205)
T ss_dssp --EEEEEECTHHHHHHHHHHH-------HHHHHHHHHHH----CGGGTEEEEEEESS-S
T ss_pred CchHHHHhhhHHHHHhhcchhh---HHHHHHHHHHHHHH----HHhcCEEEEEEeCCCC
Confidence 4567888999999976543221 11223333333332 3466899999999886
No 394
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=61.14 E-value=64 Score=23.79 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=45.6
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEE-EEEecCCC----CCCCccccCCCccceEEE
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVF-IIGATNRP----DIIDPAILRPGRLDQLIY 88 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~-vi~ttn~~----~~ld~al~r~grfd~~i~ 88 (110)
.|-||+|+|+|++ ...+++.|+..+......-+++ |+|-+..+ ..++.+..+ ++... .
T Consensus 199 ~~lVIi~eD~EsF--------------~~~VL~dlI~ils~~~~~lP~vli~GiaTs~~~~~~~Lp~~~~~--~L~~~-~ 261 (330)
T PF07034_consen 199 PPLVIIFEDFESF--------------DSQVLQDLILILSSYLDRLPFVLIFGIATSVEAFHSRLPRSTLS--LLRIK-K 261 (330)
T ss_pred CCEEEEEcccccC--------------CHHHHHHHHHHHHhccCCcCEEEEEecCCChHHHHhhCCHHHHh--hcCce-E
Confidence 4889999999977 2457888888887765555554 44444444 357777776 66544 3
Q ss_pred ecCCCHHHHH-HHHH
Q psy13774 89 IPLPDEIWLI-LSDK 102 (110)
Q Consensus 89 ~~~P~~~~R~-~~~~ 102 (110)
|..++..... .+++
T Consensus 262 F~~~~~~~~l~~v~~ 276 (330)
T PF07034_consen 262 FQLQSSSEILERVLE 276 (330)
T ss_pred EEeCChHHHHHHHHH
Confidence 5555555553 4443
No 395
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=61.07 E-value=14 Score=27.32 Aligned_cols=57 Identities=26% Similarity=0.329 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.|+++||--+-+ +......+..++..+ ....+..+|.+|++++.+
T Consensus 148 Rv~lAraL~~~p~iLlLDEPts~L----------D~~~~~~l~~~L~~l---~~~~g~tiilvtH~~~~i 204 (343)
T PRK11153 148 RVAIARALASNPKVLLCDEATSAL----------DPATTRSILELLKDI---NRELGLTIVLITHEMDVV 204 (343)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 345667778899999999965322 112333333444333 223345677777776543
No 396
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=60.95 E-value=28 Score=23.04 Aligned_cols=54 Identities=22% Similarity=0.508 Sum_probs=28.1
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc-----CCC----CCCEEEEEecCCCCCCCccccCCCccc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG-----MGA----KKNVFIIGATNRPDIIDPAILRPGRLD 84 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~~----~~~v~vi~ttn~~~~ld~al~r~grfd 84 (110)
.-..+||||||.|-. .+-..|+..++. +.. .-++-+|++|+. ++.. +...|+|.
T Consensus 93 ~~GtL~Ld~I~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~-~v~~g~fr 155 (168)
T PF00158_consen 93 NGGTLFLDEIEDLPP--------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEE-LVEQGRFR 155 (168)
T ss_dssp TTSEEEEETGGGS-H--------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHH-HHHTTSS-
T ss_pred cceEEeecchhhhHH--------------HHHHHHHHHHhhchhccccccccccccceEEeecCc--CHHH-HHHcCCCh
Confidence 447999999998832 122234444432 111 136889999985 3333 33336664
No 397
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=60.91 E-value=21 Score=23.53 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-++..|-...|.++++||--+=+ +......+..++..+. .+.+..+|.+|++++.+
T Consensus 106 l~laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSHL----------DIAHQIELLELLRRLA---RERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 34566777899999999965322 1123334444444432 22234666777776644
No 398
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.33 E-value=18 Score=24.60 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+ ..+.+..+|.+|++++.+
T Consensus 139 r~~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~---~~~~~~tvi~~tH~~~~~ 195 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGL----------DPQTRAHVWEYIEKL---KEEFGMTILLTTHYMEEA 195 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 345677788899999999965322 112333444444433 223234566677766543
No 399
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.26 E-value=25 Score=23.68 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+.+++..+. . . ..+|.+|++++.+
T Consensus 138 rv~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~-~-~tii~vsH~~~~~ 192 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGL----------DPEERIRFRNLLSELG---E-D-RIVILSTHIVEDV 192 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHh---C-C-CEEEEEcCCHHHH
Confidence 445677778899999999955221 1123334444444442 2 2 4567777766544
No 400
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=60.18 E-value=15 Score=25.54 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-++..|-...|.++++||--+=+ +......+..++..+ ....+..+|.+|++++.+
T Consensus 156 rv~laral~~~p~vlllDEP~~~L----------D~~~~~~l~~~l~~~---~~~~~~tii~vsH~~~~~ 212 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGL----------DVSVQARLLDLLRGL---VRDLGLAVIIVTHDLGVA 212 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 345667778899999999965221 112333333333332 222344666777776543
No 401
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.08 E-value=18 Score=25.57 Aligned_cols=55 Identities=25% Similarity=0.213 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
-.+..|-...|.|+++||--+=+ +......+..++..+. ...+..+|.+|++++.
T Consensus 169 v~lAral~~~p~illLDEPt~~L----------D~~~~~~l~~~l~~~~---~~~g~tiii~tH~~~~ 223 (269)
T cd03294 169 VGLARALAVDPDILLMDEAFSAL----------DPLIRREMQDELLRLQ---AELQKTIVFITHDLDE 223 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 45667778899999999955221 1123334444443332 2223456677776654
No 402
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=60.01 E-value=26 Score=23.79 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=24.3
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
.|.++++||.-+-+.. .....+..++..+ ... +..+|.+|++++.+
T Consensus 151 ~~~~lllDEp~~~lD~----------~~~~~~~~~l~~~---~~~-~~tii~itH~~~~~ 196 (213)
T cd03279 151 RLEALFIDEGFGTLDP----------EALEAVATALELI---RTE-NRMVGVISHVEELK 196 (213)
T ss_pred CCCEEEEeCCcccCCH----------HHHHHHHHHHHHH---HhC-CCEEEEEECchHHH
Confidence 5789999997632211 2223333333333 222 44677777766544
No 403
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=59.88 E-value=15 Score=26.31 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.|+++||--+=+ +......+..++..+. ...+.-++.+|++.+.+
T Consensus 153 rv~laraL~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~l~---~~~g~tvl~vtH~~~~~ 209 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGL----------DPQSKRQVMRLLKSLQ---TDENKTIILVSHDMNEV 209 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEecCHHHH
Confidence 345667778899999999966332 1123334444444432 23344566666666543
No 404
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=59.87 E-value=17 Score=28.90 Aligned_cols=67 Identities=22% Similarity=0.412 Sum_probs=37.8
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc-----CCC----CCCEEEEEecCCCCCCCccccCCCccce
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG-----MGA----KKNVFIIGATNRPDIIDPAILRPGRLDQ 85 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~~----~~~v~vi~ttn~~~~ld~al~r~grfd~ 85 (110)
...||||||+.+-. ..-..|+..++. +.+ ..++-+|++||.. +. .+...|+|..
T Consensus 323 gGTLfLdeI~~Lp~--------------~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~ 385 (538)
T PRK15424 323 GGTLFLDEIGEMPL--------------PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRR 385 (538)
T ss_pred CCEEEEcChHhCCH--------------HHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCC--HH-HHHhcccchH
Confidence 46899999998731 122234444432 111 1245688888753 22 2334455542
Q ss_pred -------EEEecCCCHHHHH
Q psy13774 86 -------LIYIPLPDEIWLI 98 (110)
Q Consensus 86 -------~i~~~~P~~~~R~ 98 (110)
.+.+.+|.-.+|.
T Consensus 386 dL~yrL~~~~I~lPPLReR~ 405 (538)
T PRK15424 386 DLFYRLSILRLQLPPLRERV 405 (538)
T ss_pred HHHHHhcCCeecCCChhhch
Confidence 4677788877775
No 405
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=59.78 E-value=20 Score=25.27 Aligned_cols=56 Identities=21% Similarity=0.175 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. . . .-||.+|++++.+.
T Consensus 159 rv~laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~L~~~~---~-~-~tvi~vtH~~~~~~ 214 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSAL----------DPISTLRIEELMHELK---E-Q-YTIIIVTHNMQQAA 214 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHh---c-C-CEEEEEecCHHHHH
Confidence 345667777899999999964221 1123333444444432 2 2 35666777765543
No 406
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=59.56 E-value=22 Score=27.32 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=37.4
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc-----CCC----CCCEEEEEecCCCCCCCccccC-CCccc
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG-----MGA----KKNVFIIGATNRPDIIDPAILR-PGRLD 84 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~~----~~~v~vi~ttn~~~~ld~al~r-~grfd 84 (110)
..++|+|||..+-+. .-..++..++. +.+ ...|-+|++|| .+++.+++. ..-+.
T Consensus 174 GGtLfLDEI~~LP~~--------------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~--~~l~~~~~~g~dl~~ 237 (403)
T COG1221 174 GGTLFLDEIHRLPPE--------------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATT--EDLEEAVLAGADLTR 237 (403)
T ss_pred CCEEehhhhhhCCHh--------------HHHHHHHHHHcCceEecCCCCCcCCCceeeeccc--cCHHHHHHhhcchhh
Confidence 368999999977221 12234555553 222 23688888888 445544443 11111
Q ss_pred --eEEEecCCCHHHHH
Q psy13774 85 --QLIYIPLPDEIWLI 98 (110)
Q Consensus 85 --~~i~~~~P~~~~R~ 98 (110)
..+.+.+|.-.+|.
T Consensus 238 rl~~~~I~LPpLrER~ 253 (403)
T COG1221 238 RLNILTITLPPLRERK 253 (403)
T ss_pred hhcCceecCCChhhch
Confidence 23455667777764
No 407
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=59.54 E-value=9.9 Score=25.07 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+-.+..|-...|.++++||--+=+ +......+.+++..+. ...+..++.+|++++.++
T Consensus 108 r~~la~al~~~p~llilDEP~~~L----------D~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 108 RVALARALAMDPDVLLLDEPTSAL----------DPITRREVRALLKSLQ---AQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 445677778899999999965322 1123334444444432 232345666666655443
No 408
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=59.52 E-value=15 Score=26.18 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+ ....+..++.+|++++.+
T Consensus 152 rv~laral~~~p~llllDEPt~gL----------D~~~~~~l~~~l~~l---~~~~g~tillvtH~~~~~ 208 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAML----------DPSGRREVVNTIKEL---NKKYGITIILITHYMEEA 208 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEecChHHH
Confidence 345666778899999999965322 112333333444333 223345666777777654
No 409
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=59.50 E-value=18 Score=27.04 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCC-CEEEEEecCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKK-NVFIIGATNRPDI 72 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~-~v~vi~ttn~~~~ 72 (110)
-+...|-...|.++++||--+=+ ......++...+..+.... +.-+|.+|++++.
T Consensus 146 vaLARAL~~~P~llLLDEP~s~L-------------D~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e 201 (362)
T TIGR03258 146 IAIARAIAIEPDVLLLDEPLSAL-------------DANIRANMREEIAALHEELPELTILCVTHDQDD 201 (362)
T ss_pred HHHHHHHhcCCCEEEEcCccccC-------------CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 35667778899999999954211 1122333444444443332 4566777776654
No 410
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=59.40 E-value=31 Score=23.66 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCeEEEEccccc
Q psy13774 5 TGASMARAAAPCVLFFDELDS 25 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~ 25 (110)
-.+..|-...|.++++||--+
T Consensus 148 v~la~al~~~p~llllDEP~~ 168 (238)
T cd03249 148 IAIARALLRNPKILLLDEATS 168 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccc
Confidence 346667778899999999653
No 411
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=59.37 E-value=21 Score=25.30 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. . . ..+|.+|++++.+
T Consensus 162 rl~laral~~~p~lllLDEPt~gL----------D~~~~~~l~~~l~~~~---~-~-~tiiivtH~~~~~ 216 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSAL----------DPISTLKIEETMHELK---K-N-FTIVIVTHNMQQA 216 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccC----------CHHHHHHHHHHHHHHh---c-C-CEEEEEeCCHHHH
Confidence 345666777889999999966321 1123333444444442 2 2 3566777776544
No 412
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=59.33 E-value=27 Score=24.17 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+=+ +......+..++..+. . +..+|.+|++++.+
T Consensus 155 v~laral~~~p~lllLDEP~~~L----------D~~~~~~l~~~l~~~~---~--~~tiii~sH~~~~~ 208 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANL----------DPENTAKIESLFLELK---K--DMTIVLVTHFPQQA 208 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccC----------CHHHHHHHHHHHHHHh---c--CCEEEEEeCCHHHH
Confidence 34566667889999999965322 1123333434444432 2 24566777776543
No 413
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=59.26 E-value=25 Score=24.34 Aligned_cols=55 Identities=25% Similarity=0.247 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-++..|-...|.++++||--+-+. ......+..++..+ .. +..+|.+|++.+.+
T Consensus 150 rv~laral~~~p~lllLDEP~~~LD----------~~~~~~l~~~l~~~---~~--~~tiii~tH~~~~~ 204 (246)
T PRK14269 150 RLCIARALAIKPKLLLLDEPTSALD----------PISSGVIEELLKEL---SH--NLSMIMVTHNMQQG 204 (246)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCC----------HHHHHHHHHHHHHH---hC--CCEEEEEecCHHHH
Confidence 4456777788999999999763321 12233333344333 22 34566777766544
No 414
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=59.20 E-value=23 Score=25.13 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+ ... +..++.+|++++.+
T Consensus 145 rv~laral~~~p~llllDEPt~gL----------D~~~~~~l~~~l~~l---~~~-~~til~vtH~~~~~ 200 (275)
T PRK13639 145 RVAIAGILAMKPEIIVLDEPTSGL----------DPMGASQIMKLLYDL---NKE-GITIIISTHDVDLV 200 (275)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHH---HHC-CCEEEEEecCHHHH
Confidence 345677778899999999965322 112333343444433 222 44566777766543
No 415
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=59.17 E-value=25 Score=29.50 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=41.2
Q ss_pred HHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc-----cccCCCc
Q psy13774 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP-----AILRPGR 82 (110)
Q Consensus 8 ~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~-----al~r~gr 82 (110)
+.+....|.++++||.-..+... .....+..++..+. .. +..++.+|.+++.+.. +++. -
T Consensus 681 ~~~l~~~p~illlDE~w~~L~d~---------~~~~~i~~~lk~~R---K~-g~~vil~TQs~~d~~~s~i~~~ile--n 745 (852)
T PRK13891 681 ERALKGQPAVIILDEAWLMLGHP---------AFRAKIREWLKVLR---KA-NCLVLMATQSLSDAANSGILDVIVE--S 745 (852)
T ss_pred HHHhcCCCCEEEEeCchhhcCCH---------HHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHHhhCchHHHHHH--c
Confidence 33446789999999988665211 23334444444433 22 3466677777766543 2333 4
Q ss_pred cceEEEecCCC
Q psy13774 83 LDQLIYIPLPD 93 (110)
Q Consensus 83 fd~~i~~~~P~ 93 (110)
.+..|.++.|.
T Consensus 746 ~~t~I~Lpn~~ 756 (852)
T PRK13891 746 TATKIFLPNVY 756 (852)
T ss_pred CCcceecCCCc
Confidence 45677777664
No 416
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=59.01 E-value=8.2 Score=27.41 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=41.4
Q ss_pred HhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc
Q psy13774 11 RAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP 75 (110)
Q Consensus 11 ~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~ 75 (110)
....-.+|+||-+-+++.......++ ...-.+.+..++..|..+....++.|+.|-.-...++.
T Consensus 130 ~~~~ikLIVIDSIaalfr~e~~~~~~-~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~ 193 (256)
T PF08423_consen 130 SESKIKLIVIDSIAALFRSEFSGRGD-LAERQRMLARLARILKRLARKYNIAVVVTNQVTTKIDS 193 (256)
T ss_dssp HHSCEEEEEEETSSHHHHHHSGSTTT-HHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT-
T ss_pred cccceEEEEecchHHHHHHHHccchh-hHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCCc
Confidence 34567899999999998754322211 11234677777777877777778888777655556554
No 417
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=58.92 E-value=21 Score=24.08 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 146 rv~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~vsH~~~~~ 201 (216)
T TIGR00960 146 RVAIARAIVHKPPLLLADEPTGNL----------DPELSRDIMRLFEEFN---RR-GTTVLVATHDINLV 201 (216)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 345667778899999999955322 1123334444444432 22 34567777776543
No 418
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.77 E-value=9.6 Score=27.44 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=19.7
Q ss_pred CcHHHHHHHHHhcCCeEEEEcccc
Q psy13774 1 MRIATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 1 ~~l~~~F~~A~~~~P~ii~iDeiD 24 (110)
|+=+.++++|-+..|.|||+||=-
T Consensus 150 M~KRvaLARAialdPell~~DEPt 173 (263)
T COG1127 150 MRKRVALARAIALDPELLFLDEPT 173 (263)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCC
Confidence 444678889999999999999943
No 419
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=58.75 E-value=21 Score=23.39 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+.+++..+ .. +..+|.+|++++.+
T Consensus 106 rv~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~---~~--~~tii~~sh~~~~~ 160 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEV---LK--DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHH---cC--CCEEEEEecCHHHH
Confidence 345667778899999999966322 112333333444333 22 34566677766544
No 420
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=58.55 E-value=45 Score=25.88 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCeEEEEccccccccc
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKS 29 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~ 29 (110)
+..+.+.+++..|.+|+||.+-.+...
T Consensus 159 ~~~I~~~i~~~~~~~vVIDSIq~l~~~ 185 (454)
T TIGR00416 159 WEQICANIEEENPQACVIDSIQTLYSP 185 (454)
T ss_pred HHHHHHHHHhcCCcEEEEecchhhccc
Confidence 456667778889999999999998654
No 421
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=58.54 E-value=24 Score=23.01 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=31.0
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
.+..|-...|.++++||--+-+. ......+..++..+ .. +..+|.+|++++.+.
T Consensus 106 ~la~al~~~p~llllDEP~~gLD----------~~~~~~l~~~l~~~---~~--~~tii~~sh~~~~~~ 159 (171)
T cd03228 106 AIARALLRDPPILILDEATSALD----------PETEALILEALRAL---AK--GKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcCCC----------HHHHHHHHHHHHHh---cC--CCEEEEEecCHHHHH
Confidence 45667778999999999553221 12233333344333 22 256677788776553
No 422
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=58.47 E-value=22 Score=23.93 Aligned_cols=55 Identities=18% Similarity=0.191 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+=+ +......+..++..+. . .+..+|.+|++++.+
T Consensus 141 v~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~-~~~tvi~~sH~~~~~ 195 (213)
T cd03235 141 VLLARALVQDPDLLLLDEPFAGV----------DPKTQEDIYELLRELR---R-EGMTILVVTHDLGLV 195 (213)
T ss_pred HHHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHHH
Confidence 35566777889999999954221 1123334444444432 2 234567777766543
No 423
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=58.46 E-value=15 Score=27.16 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+-.+..|-.+.|.++++||--+=+ +......+..++..+. . .+.-||.+|++.+.+.
T Consensus 180 rv~lA~aL~~~P~lLiLDEPt~gL----------D~~~r~~l~~~l~~l~---~-~g~tilisSH~l~e~~ 236 (340)
T PRK13536 180 RLTLARALINDPQLLILDEPTTGL----------DPHARHLIWERLRSLL---A-RGKTILLTTHFMEEAE 236 (340)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCC----------CHHHHHHHHHHHHHHH---h-CCCEEEEECCCHHHHH
Confidence 445677778899999999955221 1133344444444442 2 2445667777665543
No 424
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=58.44 E-value=21 Score=28.27 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=35.8
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc-----CCCC----CCEEEEEecCCCCCCCccccCCCccce
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG-----MGAK----KNVFIIGATNRPDIIDPAILRPGRLDQ 85 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~~~----~~v~vi~ttn~~~~ld~al~r~grfd~ 85 (110)
...||+||+|.|-. ..-..|+..++. +.+. .++-+|++||..- . .+...|+|..
T Consensus 308 gGTLfLdeI~~Lp~--------------~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l--~-~~v~~g~fr~ 370 (526)
T TIGR02329 308 RGTLFLDEIGEMPL--------------PLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCAL--T-TAVQQGRFRR 370 (526)
T ss_pred CceEEecChHhCCH--------------HHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCH--H-HHhhhcchhH
Confidence 46899999998731 122234444432 1111 2356788887542 1 1223344432
Q ss_pred -------EEEecCCCHHHHH
Q psy13774 86 -------LIYIPLPDEIWLI 98 (110)
Q Consensus 86 -------~i~~~~P~~~~R~ 98 (110)
.+.+.+|.-.+|.
T Consensus 371 dL~~rL~~~~I~lPPLReR~ 390 (526)
T TIGR02329 371 DLFYRLSILRIALPPLRERP 390 (526)
T ss_pred HHHHhcCCcEEeCCCchhch
Confidence 3667778877775
No 425
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=58.36 E-value=21 Score=25.43 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+. ...... +...+..+....+.-+|.+|++.+.+
T Consensus 148 rv~lAral~~~p~lLlLDEPt~~LD----------~~~~~~---l~~~l~~l~~~~g~tilivtH~~~~~ 204 (279)
T PRK13650 148 RVAIAGAVAMRPKIIILDEATSMLD----------PEGRLE---LIKTIKGIRDDYQMTVISITHDLDEV 204 (279)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCC----------HHHHHH---HHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 3456777888999999999653321 122333 33333333233344666677766544
No 426
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=58.32 E-value=19 Score=23.97 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=25.2
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
..|+++++||.-.-.... ....+...++..+.. ..+..+|.+|+..+
T Consensus 77 ~~~~llllDEp~~g~d~~---------~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 77 TENSLVLLDELGRGTSTY---------DGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred CCCeEEEEecCCCCCCHH---------HHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 479999999976322110 122333444444432 22345666777764
No 427
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=58.26 E-value=22 Score=24.30 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCcc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRL 83 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grf 83 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. ...+..+|.+|++.+.+ . ..
T Consensus 145 rv~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tvii~sh~~~~~-----~--~~ 204 (225)
T PRK10247 145 RISLIRNLQFMPKVLLLDEITSAL----------DESNKHNVNEIIHRYV---REQNIAVLWVTHDKDEI-----N--HA 204 (225)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEECChHHH-----H--hC
Confidence 345677778899999999964221 1123333434443332 22233566666665543 2 34
Q ss_pred ceEEEe
Q psy13774 84 DQLIYI 89 (110)
Q Consensus 84 d~~i~~ 89 (110)
|+.+.+
T Consensus 205 d~i~~l 210 (225)
T PRK10247 205 DKVITL 210 (225)
T ss_pred CEEEEE
Confidence 666777
No 428
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=58.16 E-value=25 Score=24.11 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
-.+..|-...|.++++||--+-+ +......+..++..+ ... +..+|.+|++++.+.
T Consensus 151 v~laral~~~p~llllDEP~~gL----------D~~~~~~~~~~l~~~---~~~-~~tiii~sH~~~~~~ 206 (224)
T cd03220 151 LAFAIATALEPDILLIDEVLAVG----------DAAFQEKCQRRLREL---LKQ-GKTVILVSHDPSSIK 206 (224)
T ss_pred HHHHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHH---HhC-CCEEEEEeCCHHHHH
Confidence 34666777889999999965322 112333333333333 222 345677777765443
No 429
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=58.09 E-value=16 Score=27.38 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCeEEEEcccc
Q psy13774 5 TGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD 24 (110)
-++..|-...|.++++||--
T Consensus 142 vaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 142 VAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred HHHHHHHhcCCCEEEEeCCc
Confidence 45667778899999999954
No 430
>PRK14700 recombination factor protein RarA; Provisional
Probab=57.94 E-value=27 Score=25.78 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=34.2
Q ss_pred CCCCEEEEEecC-CC-CCCCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 57 AKKNVFIIGATN-RP-DIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 57 ~~~~v~vi~ttn-~~-~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
+++.+++||+|. +| -.+.+|+++ |. +.+.+.+++.+.-..+++-.+
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral 52 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKAL 52 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHH
Confidence 355677777764 44 589999999 87 789999999888766555444
No 431
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=57.90 E-value=17 Score=28.22 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. .. +..||.+|++++.+
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~l~---~~-g~tvi~~sHd~~~~ 468 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGI----------DVGAKYEIYKLINQLV---QQ-GVAIIVISSELPEV 468 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCc----------CHhHHHHHHHHHHHHH---HC-CCEEEEECCCHHHH
Confidence 445667777889999999954211 1133344444444443 22 44677888877544
No 432
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=57.85 E-value=22 Score=27.36 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 143 rv~la~al~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tvii~tH~~~~~ 198 (490)
T PRK10938 143 KTLLCQALMSEPDLLILDEPFDGL----------DVASRQQLAELLASLH---QS-GITLVLVLNRFDEI 198 (490)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---hc-CCeEEEEeCCHHHH
Confidence 345667777899999999955221 1133444444444443 22 44667788877654
No 433
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=57.69 E-value=22 Score=23.89 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+=+ +......+..++..+. . .+..+|.+|++++.+
T Consensus 135 v~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~-~~~tii~~tH~~~~~ 189 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGL----------DPDGIKELRELILSLR---D-QGITVLISSHLLSEI 189 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccC----------CHHHHHHHHHHHHHHH---H-CCCEEEEEcCCHHHH
Confidence 34566677889999999965322 1123334444444432 2 234566777776544
No 434
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=57.66 E-value=31 Score=23.68 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+..++.. +.. +..+|.+|++++.+
T Consensus 146 rv~laral~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~---~~~--~~tiii~sH~~~~~ 200 (237)
T cd03252 146 RIAIARALIHNPRILIFDEATSAL----------DYESEHAIMRNMHD---ICA--GRTVIIIAHRLSTV 200 (237)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccC----------CHHHHHHHHHHHHH---hcC--CCEEEEEeCCHHHH
Confidence 345667777899999999966332 11233333334433 322 34577777877654
No 435
>KOG2170|consensus
Probab=57.52 E-value=33 Score=25.66 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=17.1
Q ss_pred HHHHHHhcCCeEEEEcccccc
Q psy13774 6 GASMARAAAPCVLFFDELDSI 26 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l 26 (110)
+-..+.+++-+|.++||+|.+
T Consensus 170 v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 170 VRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHhcCCceEEechhhhc
Confidence 445566888899999999987
No 436
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=57.44 E-value=22 Score=25.63 Aligned_cols=56 Identities=20% Similarity=0.100 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. . .+.-+|.+|++++.+
T Consensus 143 rv~la~al~~~p~lllLDEPt~gL----------D~~~~~~l~~~l~~~~---~-~g~til~~sH~~~~~ 198 (303)
T TIGR01288 143 RLTLARALINDPQLLILDEPTTGL----------DPHARHLIWERLRSLL---A-RGKTILLTTHFMEEA 198 (303)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---h-CCCEEEEECCCHHHH
Confidence 345667778899999999954221 1123333334444332 2 234566777766543
No 437
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=57.43 E-value=22 Score=24.60 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+=+. ......+..++..+. ...+..+|.+|++.+.+
T Consensus 140 l~la~al~~~p~llllDEPt~~LD----------~~~~~~l~~~l~~~~---~~~g~tii~~sH~~~~~ 195 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALD----------PTSTEIIEELIVKLK---NKMNLTVIWITHNMEQA 195 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCC----------HHHHHHHHHHHHHHH---HhCCCEEEEEeccHHHH
Confidence 345667778999999999663321 123334444444432 22233566677776543
No 438
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=57.35 E-value=43 Score=22.44 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-.+..|-...|.++++||--
T Consensus 133 rv~laral~~~p~llllDEP~ 153 (207)
T cd03369 133 LLCLARALLKRPRVLVLDEAT 153 (207)
T ss_pred HHHHHHHHhhCCCEEEEeCCc
Confidence 345666777899999999965
No 439
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=57.31 E-value=18 Score=25.45 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 136 rl~laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~L~~~~---~~~g~tviivsH~~~~~ 192 (255)
T PRK11248 136 RVGIARALAANPQLLLLDEPFGAL----------DAFTREQMQTLLLKLW---QETGKQVLLITHDIEEA 192 (255)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 345667777899999999955321 1123334444444431 12234566677776644
No 440
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=57.31 E-value=19 Score=24.69 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+-+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 138 v~laral~~~p~lllLDEP~~gL----------D~~~~~~~~~~l~~~~---~~~~~tiii~sH~~~~~ 193 (232)
T PRK10771 138 VALARCLVREQPILLLDEPFSAL----------DPALRQEMLTLVSQVC---QERQLTLLMVSHSLEDA 193 (232)
T ss_pred HHHHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEECCHHHH
Confidence 34566777889999999965322 1123333444443332 22234566677777654
No 441
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=57.27 E-value=21 Score=24.37 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. ...+..+|.+|++++.+
T Consensus 139 rv~la~al~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~ 195 (230)
T TIGR03410 139 QLAIARALVTRPKLLLLDEPTEGI----------QPSIIKDIGRVIRRLR---AEGGMAILLVEQYLDFA 195 (230)
T ss_pred HHHHHHHHhcCCCEEEecCCcccC----------CHHHHHHHHHHHHHHH---HcCCcEEEEEeCCHHHH
Confidence 345666777899999999965321 1133444444444442 22344666777776543
No 442
>PRK04841 transcriptional regulator MalT; Provisional
Probab=57.00 E-value=1.1e+02 Score=25.24 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=12.6
Q ss_pred cCCeEEEEcccccc
Q psy13774 13 AAPCVLFFDELDSI 26 (110)
Q Consensus 13 ~~P~ii~iDeiD~l 26 (110)
..|.+|+|||++.+
T Consensus 120 ~~~~~lvlDD~h~~ 133 (903)
T PRK04841 120 HQPLYLVIDDYHLI 133 (903)
T ss_pred CCCEEEEEeCcCcC
Confidence 67999999999976
No 443
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=56.98 E-value=21 Score=27.18 Aligned_cols=56 Identities=16% Similarity=0.072 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-.+.|.|+++||=-+-+. ...+..+..++..+. . .+.-+|.+|++++.+
T Consensus 147 Rv~IArAL~~~P~iLLLDEPtsgLD----------~~~~~~l~~lL~~l~---~-~g~TIIivsHdl~~~ 202 (402)
T PRK09536 147 RVLLARALAQATPVLLLDEPTASLD----------INHQVRTLELVRRLV---D-DGKTAVAAIHDLDLA 202 (402)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCC----------HHHHHHHHHHHHHHH---h-cCCEEEEEECCHHHH
Confidence 4566778889999999999543221 122333334444443 2 234677777776654
No 444
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=56.97 E-value=15 Score=24.64 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+=+ +......+..++..+.. . +..+|.+|++++.+
T Consensus 144 v~la~al~~~p~llllDEP~~~L----------D~~~~~~l~~~l~~~~~---~-~~tvi~~sh~~~~~ 198 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSAL----------DPELVGEVLDVMKDLAE---E-GMTMVVVTHEMGFA 198 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHH
Confidence 34566777889999999965321 11334444444444432 2 33566677776544
No 445
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=56.85 E-value=28 Score=23.54 Aligned_cols=55 Identities=27% Similarity=0.267 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
-.+..|-...|.++++||--+-+. ......+..++..+. . . ..+|.+|++++.+.
T Consensus 142 v~la~al~~~p~llllDEP~~~LD----------~~~~~~l~~~l~~~~---~-~-~tii~~sH~~~~~~ 196 (220)
T cd03263 142 LSLAIALIGGPSVLLLDEPTSGLD----------PASRRAIWDLILEVR---K-G-RSIILTTHSMDEAE 196 (220)
T ss_pred HHHHHHHhcCCCEEEECCCCCCCC----------HHHHHHHHHHHHHHh---c-C-CEEEEEcCCHHHHH
Confidence 456667778999999999763321 123334444444332 2 2 56778888776543
No 446
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=56.82 E-value=29 Score=23.24 Aligned_cols=22 Identities=14% Similarity=0.061 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCCeEEEEccccc
Q psy13774 4 ATGASMARAAAPCVLFFDELDS 25 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~ 25 (110)
+-....|-...|.++++||-.+
T Consensus 135 rv~laral~~~p~llllDEP~~ 156 (204)
T cd03250 135 RISLARAVYSDADIYLLDDPLS 156 (204)
T ss_pred HHHHHHHHhcCCCEEEEeCccc
Confidence 3456667778999999999663
No 447
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=56.78 E-value=28 Score=24.78 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEe
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGA 66 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t 66 (110)
-+.++|-+..|-|+++||-=+-+ .-.++.++|.-|.++....-.+++.|
T Consensus 145 VAIARALaM~P~vmLFDEPTSAL-------------DPElv~EVL~vm~~LA~eGmTMivVT 193 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSAL-------------DPELVGEVLDVMKDLAEEGMTMIIVT 193 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccC-------------CHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45677888999999999954221 12366677777777655444444443
No 448
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=56.77 E-value=19 Score=25.82 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+ ....+.-||.+|++.+.
T Consensus 152 rv~iAraL~~~P~llllDEPt~gL----------D~~~~~~l~~~l~~l---~~~~g~tvi~vtHd~~~ 207 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGL----------DPKGRDEILNKIKEL---HKEYNMTIILVSHSMED 207 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCC----------CHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHH
Confidence 345667778899999999965322 112333333444333 22334456667766543
No 449
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=56.64 E-value=39 Score=24.17 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-.+..|-...|.++++||--
T Consensus 153 rl~laral~~~p~lLlLDEPt 173 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPA 173 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCC
Confidence 456777888899999999954
No 450
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=56.48 E-value=22 Score=29.93 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=41.7
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCcc---ccCCCccceEEEe
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPA---ILRPGRLDQLIYI 89 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~a---l~r~grfd~~i~~ 89 (110)
..|.+++|||+..++.+. .....+..+...+- +.+..++++|..+.++..+ ++. -.+.+|.+
T Consensus 732 gr~~~~viDEaw~l~~~~---------~~a~fi~~~~k~~R----K~g~~~~~aTQsi~D~~~sa~~il~--ns~~~i~L 796 (893)
T TIGR03744 732 GRPIVMVTDEGHIITTNP---------LLAPYVVKITKMWR----KLGAWFWLATQNLADFPDSAEKMLN--MIEWWLCL 796 (893)
T ss_pred CceEEEEeehHhhhhcCH---------HHHHHHHHHHHHHH----hcCcEEEEEeCCHHHhhhHHHHHHH--hchhhhhh
Confidence 458999999999764111 23334444444443 3455788888888877633 343 45667777
Q ss_pred cCCCHH
Q psy13774 90 PLPDEI 95 (110)
Q Consensus 90 ~~P~~~ 95 (110)
+.|..+
T Consensus 797 ~q~~~~ 802 (893)
T TIGR03744 797 NMPPDE 802 (893)
T ss_pred cCCHHH
Confidence 666644
No 451
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=56.47 E-value=41 Score=22.71 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=29.1
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEe
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 89 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~ 89 (110)
..|.++++||-.+-+. ......+...+..+.. +.-+|.+|++++.+ + ..|+.+.+
T Consensus 134 ~~~~illlDEP~~~LD-------------~~~~~~l~~~l~~~~~--~~tiIiitH~~~~~-----~--~~d~v~~~ 188 (197)
T cd03278 134 RPSPFCVLDEVDAALD-------------DANVERFARLLKEFSK--ETQFIVITHRKGTM-----E--AADRLYGV 188 (197)
T ss_pred CCCCEEEEeCCcccCC-------------HHHHHHHHHHHHHhcc--CCEEEEEECCHHHH-----h--hcceEEEE
Confidence 3458999999774321 1122334444444322 23466678876543 2 45666655
No 452
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=56.43 E-value=22 Score=25.23 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+. .. +.-+|.+|++.+.+
T Consensus 146 rv~laraL~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tili~tH~~~~~ 201 (274)
T PRK13647 146 RVAIAGVLAMDPDVIVLDEPMAYL----------DPRGQETLMEILDRLH---NQ-GKTVIVATHDVDLA 201 (274)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 445677888899999999965322 1123333334444332 22 44566777766543
No 453
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=56.32 E-value=22 Score=25.28 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-.+..|-...|.++++||--
T Consensus 148 rv~lAraL~~~p~llllDEPt 168 (277)
T PRK13642 148 RVAVAGIIALRPEIIILDEST 168 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCc
Confidence 345667778899999999964
No 454
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=56.31 E-value=23 Score=23.84 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 137 l~la~al~~~p~~lllDEP~~~L----------D~~~~~~~~~~l~~~~---~~-~~tii~~sH~~~~~ 191 (210)
T cd03269 137 VQFIAAVIHDPELLILDEPFSGL----------DPVNVELLKDVIRELA---RA-GKTVILSTHQMELV 191 (210)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEECCCHHHH
Confidence 35667778899999999965322 1123334444444432 22 34677777776543
No 455
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=56.10 E-value=23 Score=24.22 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+=+ +......+..++..+. . .+..+|.+|++++.+
T Consensus 152 v~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~-~~~tii~vsH~~~~~ 206 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGL----------NPEETEELAELIRELR---E-RGITVLLVEHDMDVV 206 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHH---H-CCCEEEEEecCHHHH
Confidence 45666777889999999965322 1123344444444442 2 233566777776544
No 456
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=55.86 E-value=18 Score=31.28 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=24.4
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEe
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGA 66 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t 66 (110)
..+-++|+|||+|+.-+ ..-..+..++.+...+ ..+|+++-+
T Consensus 591 ~La~svlVlDEVHaYD~-----------~~~~~L~rlL~w~~~l--G~~VlLmSA 632 (1110)
T TIGR02562 591 RLMSSDLILDEPDDYEP-----------EDLPALLRLVQLAGLL--GSRVLLSSA 632 (1110)
T ss_pred HhcCCCEEEECCccCCH-----------HHHHHHHHHHHHHHHc--CCCEEEEeC
Confidence 45568999999998722 2334555555554442 334544444
No 457
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=55.65 E-value=19 Score=27.87 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCC
Q psy13774 1 MRIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRP 80 (110)
Q Consensus 1 ~~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~ 80 (110)
++=+-.+..|-...|.++++|| ...+-.......+...+..+... +..+|.+|++++.+..
T Consensus 146 ~~qrv~la~al~~~p~lllLDE-------------Pt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~----- 206 (501)
T PRK10762 146 EQQMVEIAKVLSFESKVIIMDE-------------PTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFE----- 206 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEeC-------------CcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH-----
Q ss_pred CccceEEEe
Q psy13774 81 GRLDQLIYI 89 (110)
Q Consensus 81 grfd~~i~~ 89 (110)
-.|+.+.+
T Consensus 207 -~~d~i~~l 214 (501)
T PRK10762 207 -ICDDVTVF 214 (501)
T ss_pred -hCCEEEEE
No 458
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=55.62 E-value=35 Score=23.86 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=31.3
Q ss_pred cCCeEEEEcccccccc------cCCCCC-CCCCCchHHHHHHHHHhhhcCCCC-CCEEEEEec
Q psy13774 13 AAPCVLFFDELDSIAK------SRGGSV-GDGGGAADRVINQILTEMDGMGAK-KNVFIIGAT 67 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~------~r~~~~-~~~~~~~~~~~~~ll~~ld~~~~~-~~v~vi~tt 67 (110)
+...+|+||.++.+.. .+.+.. .........+-..|+..+..+... .+|++++-.
T Consensus 80 ~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 80 VKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred ccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 4468999999999865 232211 112224445566676666666443 356665543
No 459
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=55.59 E-value=38 Score=23.27 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+. ......+..++..+. .. +..+|.+|++++.+
T Consensus 144 rv~la~al~~~p~llllDEP~~~LD----------~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~ 199 (240)
T PRK09493 144 RVAIARALAVKPKLMLFDEPTSALD----------PELRHEVLKVMQDLA---EE-GMTMVIVTHEIGFA 199 (240)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCC----------HHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHH
Confidence 3456677778999999999764321 123334444444442 22 34566677766544
No 460
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=55.49 E-value=25 Score=23.50 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-.+..|-...|.++++||--
T Consensus 79 rv~laral~~~p~lllLDEPt 99 (177)
T cd03222 79 RVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred HHHHHHHHhcCCCEEEEECCc
Confidence 345566777889999999965
No 461
>KOG0922|consensus
Probab=55.44 E-value=18 Score=29.47 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC------Ccc
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII------DPA 76 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l------d~a 76 (110)
|+++..----.+-++|.|||++.= .-...++-.||..+-.-+..-+++|..+|=+.+.+ -|-
T Consensus 152 LRE~l~Dp~LskYsvIIlDEAHER------------sl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~a~i 219 (674)
T KOG0922|consen 152 LREILKDPLLSKYSVIILDEAHER------------SLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNNAPI 219 (674)
T ss_pred HHHHhcCCccccccEEEEechhhh------------hhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcCCce
Confidence 444444333455689999999821 13444555666666554445578888877655433 244
Q ss_pred ccCCCc-cceEEEe
Q psy13774 77 ILRPGR-LDQLIYI 89 (110)
Q Consensus 77 l~r~gr-fd~~i~~ 89 (110)
+.-||| |...|.+
T Consensus 220 ~~i~GR~fPVei~y 233 (674)
T KOG0922|consen 220 LTIPGRTFPVEILY 233 (674)
T ss_pred EeecCCCCceeEEe
Confidence 556777 5555554
No 462
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=55.34 E-value=22 Score=24.20 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
-.+..|-...|.++++||--+-+ +......+..++..+. ...+..||.+|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~ 209 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNL----------DRQTGDKIADLLFSLN---REHGTTLILVTHDLQL 209 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHH
Confidence 34566667889999999965322 1123334444444332 2223456667777653
No 463
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=55.31 E-value=25 Score=24.54 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+-+ +......+..++..+. . +..+|.+|++++.+
T Consensus 164 v~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~--~~tiiivtH~~~~~ 217 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSAL----------DPVSTRKIEELILKLK---E--KYTIVIVTHNMQQA 217 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccC----------CHHHHHHHHHHHHHHh---c--CCEEEEEEcCHHHH
Confidence 44566777889999999966332 1123334444444442 2 23566777776543
No 464
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=55.22 E-value=24 Score=25.96 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-.+..|-...|.+|++||--+-+.. .... .++..+..+....+.-+|..|++...
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~----------~~~~---~i~~lL~~l~~~~g~til~iTHdl~~ 217 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDV----------SVQA---QVLNLMMDLQQELGLSYVFISHDLSV 217 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCH----------HHHH---HHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 45667788889999999996533211 1222 33333333323334466677776553
No 465
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=55.08 E-value=21 Score=27.74 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-++..|-...|.++++||--+-+ +......+..++..+ ....+.-||.+|++++.+
T Consensus 435 rv~laral~~~p~lLllDEPt~~L----------D~~~~~~l~~~l~~l---~~~~g~tvi~vsHd~~~~ 491 (520)
T TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTM----------DPITKVDVTHSILKA---REEMEQTFIIVSHDMDFV 491 (520)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHH---HHHcCcEEEEEeCCHHHH
Confidence 445677778899999999954221 112333333333333 223344567777776544
No 466
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=55.07 E-value=43 Score=25.39 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=45.6
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC--------ccccCCCccc
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID--------PAILRPGRLD 84 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld--------~al~r~grfd 84 (110)
..|.++++||+..+..-. .+..++... ...++.++..+..+..+. .+++. -+.
T Consensus 269 ~~~~~~~lDE~~~l~~~~-------------~l~~~l~~~----R~~G~~~~~~~Qs~~Ql~~~yg~~~a~~i~~--n~~ 329 (410)
T cd01127 269 ERRLWFFIDELPSLHKLP-------------DLVDALAEG----RKFGGCFVLGIQSYAQLEDIYGKKGAQTLAS--NLR 329 (410)
T ss_pred CCcEEEEEECccccccch-------------HHHHHHHHH----hcCCCEEEEEEcCHHHHHHHHCHHHHHHHHh--hcC
Confidence 347899999999885311 122333322 345566677777666553 24555 778
Q ss_pred eEEEecCCCHHHHHHHHHH
Q psy13774 85 QLIYIPLPDEIWLILSDKF 103 (110)
Q Consensus 85 ~~i~~~~P~~~~R~~~~~~ 103 (110)
..+.++..+.+..+.+-+.
T Consensus 330 ~~i~~~~~d~~ta~~~s~~ 348 (410)
T cd01127 330 TRIVLAAPDAKTAEHASDS 348 (410)
T ss_pred cEEEEeCCCHHHHHHHHHh
Confidence 8899998888887766543
No 467
>PRK10869 recombination and repair protein; Provisional
Probab=54.98 E-value=30 Score=27.52 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=38.0
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEE-----
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLI----- 87 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i----- 87 (110)
..|.++++||+|+-... .....+..++..+ ... .-||..|+.|... + ..|+++
T Consensus 451 ~~~~~li~DEpd~gld~----------~~~~~v~~~l~~l---~~~--~qvi~iTH~~~~~-----~--~ad~~~~v~k~ 508 (553)
T PRK10869 451 METPALIFDEVDVGISG----------PTAAVVGKLLRQL---GES--TQVMCVTHLPQVA-----G--CGHQHFFVSKE 508 (553)
T ss_pred CCCCEEEEECCCCCCCH----------HHHHHHHHHHHHH---hcC--CEEEEEecCHHHH-----H--hCCEEEEEecc
Confidence 35789999999954321 2223333344433 222 3466777776422 2 333333
Q ss_pred --------EecCCCHHHHH-HHHHHHh
Q psy13774 88 --------YIPLPDEIWLI-LSDKFLY 105 (110)
Q Consensus 88 --------~~~~P~~~~R~-~~~~~~~ 105 (110)
.+...+.++|. +|-+.+-
T Consensus 509 ~~~~~t~s~i~~L~~~~R~~EiARMl~ 535 (553)
T PRK10869 509 TDGGMTETHMQPLDKKARLQELARLLG 535 (553)
T ss_pred ccCCeeeEEEEECChhHHHHHHHHHhC
Confidence 33446778886 6666553
No 468
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=54.89 E-value=10 Score=24.58 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=10.1
Q ss_pred CCeEEEEcccccc
Q psy13774 14 APCVLFFDELDSI 26 (110)
Q Consensus 14 ~P~ii~iDeiD~l 26 (110)
.|.+|+|||+|.+
T Consensus 150 ~~~vlviDd~d~~ 162 (185)
T PF13191_consen 150 KPLVLVIDDLDWA 162 (185)
T ss_dssp --EEEEEETTTHH
T ss_pred CeEEEEEeCCCCC
Confidence 4799999999966
No 469
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=54.85 E-value=39 Score=22.80 Aligned_cols=53 Identities=23% Similarity=0.267 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+ ... ..+|.+|++.+
T Consensus 148 rl~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~---~~~--~tii~~sH~~~ 200 (220)
T cd03245 148 AVALARALLNDPPILLLDEPTSAM----------DMNSEERLKERLRQL---LGD--KTLIIITHRPS 200 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCccccC----------CHHHHHHHHHHHHHh---cCC--CEEEEEeCCHH
Confidence 345666777889999999965321 112333444444433 222 45667777665
No 470
>PRK10908 cell division protein FtsE; Provisional
Probab=54.73 E-value=26 Score=23.81 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 145 rv~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~ 200 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNL----------DDALSEGILRLFEEFN---RV-GVTVLMATHDIGLI 200 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 345666777889999999965322 1122333333443332 22 34667777776544
No 471
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=54.68 E-value=21 Score=21.17 Aligned_cols=15 Identities=20% Similarity=0.281 Sum_probs=12.2
Q ss_pred CCeEEEEcccccccc
Q psy13774 14 APCVLFFDELDSIAK 28 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~ 28 (110)
...+|+|||+|.+..
T Consensus 103 ~~~~iiiDE~h~~~~ 117 (144)
T cd00046 103 KLDLLILDEAHRLLN 117 (144)
T ss_pred cCCEEEEeCHHHHhh
Confidence 568999999998743
No 472
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=54.56 E-value=48 Score=21.59 Aligned_cols=55 Identities=25% Similarity=0.345 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-.+..|-...|.++++||--+-+ +......+.+++..+. .. +..+|.+|++.+.
T Consensus 104 rv~la~al~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~ 158 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHL----------DVEGERALNQAIAALK---AA-GATRIVIAHRPET 158 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCcccc----------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHH
Confidence 445677778899999999965322 1123334444444332 22 3456667776543
No 473
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=54.50 E-value=33 Score=26.45 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=28.6
Q ss_pred HHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC
Q psy13774 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA 57 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~ 57 (110)
..-++.=+|+|||++.+..-+.+. .-++..+.+++.+|.+..
T Consensus 235 ~aGy~GLlI~lDE~e~l~kl~~~~------~R~~~ye~lr~lidd~~~ 276 (416)
T PF10923_consen 235 DAGYKGLLILLDELENLYKLRNDQ------AREKNYEALRQLIDDIDQ 276 (416)
T ss_pred HcCCCceEEEEechHHHHhcCChH------HHHHHHHHHHHHHHHHhc
Confidence 335677899999999997544221 135567778888877644
No 474
>KOG1434|consensus
Probab=54.44 E-value=22 Score=26.05 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=43.9
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP 75 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~ 75 (110)
.--+|++|-|=+++.......++ -..-.+.+++++..+..+..+.+|-|+.|-....+.+.
T Consensus 211 ~~rlvIVDsIma~FRvDy~grge-LseRqqkLn~ml~kl~~laeefnvAVfltNQvttdpga 271 (335)
T KOG1434|consen 211 KYRLVIVDSIMALFRVDYDGRGE-LSERQQKLNQMLQKLNKLAEEFNVAVFLTNQVTTDPGA 271 (335)
T ss_pred cEEEEEEeceehheeeccccccc-HHHHHHHHHHHHHHHHHHHHhccEEEEEecceecCCcc
Confidence 34688999999998766554433 23566789999999999988888888877544444444
No 475
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=54.32 E-value=22 Score=29.65 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=42.1
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC-----ccccCCCccceE
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID-----PAILRPGRLDQL 86 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld-----~al~r~grfd~~ 86 (110)
...|.++++||.-..+... .....+..++..+.. .+..++.+|..++.+. .+++. -.+..
T Consensus 650 ~~~p~illlDE~~~~L~d~---------~~~~~i~~~lk~~RK----~~~~vil~Tq~~~d~~~s~~a~~i~~--~~~t~ 714 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHP---------VFRDKIREWLKVLRK----ANCAVVLATQSISDAERSGIIDVLKE--SCPTK 714 (818)
T ss_pred CCCCcEEEEECchhhcCCH---------HHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHhcCchHHHHHh--cCCeE
Confidence 4689999999988775311 223334444443322 3457778888887664 34555 57778
Q ss_pred EEecCCCH
Q psy13774 87 IYIPLPDE 94 (110)
Q Consensus 87 i~~~~P~~ 94 (110)
|.++.|..
T Consensus 715 i~L~n~~a 722 (818)
T PRK13830 715 ICLPNGAA 722 (818)
T ss_pred EECCCccc
Confidence 88876653
No 476
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=54.02 E-value=25 Score=24.81 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 144 rl~laraL~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tii~vtH~~~~~ 199 (271)
T PRK13638 144 RVAIAGALVLQARYLLLDEPTAGL----------DPAGRTQMIAIIRRIV---AQ-GNHVIISSHDIDLI 199 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 345667778899999999965322 1123333444444432 22 33566677776544
No 477
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=53.97 E-value=29 Score=23.90 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+.+++..+. . +..+|.+|++.+.+
T Consensus 151 rv~laral~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~~---~--~~tii~~sH~~~~~ 205 (242)
T TIGR03411 151 WLEIGMLLMQDPKLLLLDEPVAGM----------TDEETEKTAELLKSLA---G--KHSVVVVEHDMEFV 205 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCccCC----------CHHHHHHHHHHHHHHh---c--CCEEEEEECCHHHH
Confidence 345677778889999999966332 1133344444444442 2 24677777776644
No 478
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=53.94 E-value=26 Score=25.00 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-.+..|-...|.++++||--
T Consensus 151 rv~laral~~~P~llllDEPt 171 (282)
T PRK13640 151 RVAIAGILAVEPKIIILDEST 171 (282)
T ss_pred HHHHHHHHHcCCCEEEEECCc
Confidence 345667778899999999965
No 479
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=53.86 E-value=23 Score=29.37 Aligned_cols=68 Identities=26% Similarity=0.321 Sum_probs=42.0
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC-----ccccCCCccceE
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID-----PAILRPGRLDQL 86 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld-----~al~r~grfd~~ 86 (110)
...|.++++||.-..+... .....+..++..+. . .+..++.+|..++.+. .+++. -.+..
T Consensus 633 ~~~p~illlDE~~~~Ld~~---------~~~~~i~~~lk~~R---K-~~~~~i~~TQ~~~d~~~s~~~~~il~--n~~t~ 697 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDP---------VFAAQLREWLKTLR---K-KNVSVIFATQSLADIDGSAIAPAIIE--SCPTR 697 (811)
T ss_pred cCCCcEEEEcChhhhCCCH---------HHHHHHHHHHHHHH---H-cCCEEEEEECCHHHHhcCchHHHHHH--hCCee
Confidence 4579999999988765311 12333333333332 2 3456677888877554 35665 56788
Q ss_pred EEecCCCH
Q psy13774 87 IYIPLPDE 94 (110)
Q Consensus 87 i~~~~P~~ 94 (110)
|.++.|..
T Consensus 698 i~L~~~~a 705 (811)
T PRK13873 698 IFLPNERA 705 (811)
T ss_pred EEcCCchh
Confidence 88888753
No 480
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=53.65 E-value=79 Score=22.51 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=46.3
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
.+++|++||+-. + . --...+..+.... ..-++-+|..+.....+|+.++. -.+..+-+. -+
T Consensus 98 ~~~LiIlDD~~~---~----~-----~k~~~l~~~~~~g----RH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s 158 (241)
T PF04665_consen 98 PRFLIILDDLGD---K----K-----LKSKILRQFFNNG----RHYNISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NS 158 (241)
T ss_pred CCeEEEEeCCCC---c----h-----hhhHHHHHHHhcc----cccceEEEEEeeecccCCHHHhh--cceEEEEec-Cc
Confidence 378999999631 0 0 0122334444321 33478999999999999999987 788877775 35
Q ss_pred HHHHHHHHHHH
Q psy13774 94 EIWLILSDKFL 104 (110)
Q Consensus 94 ~~~R~~~~~~~ 104 (110)
....+.+++.+
T Consensus 159 ~~dl~~i~~~~ 169 (241)
T PF04665_consen 159 KRDLENIYRNM 169 (241)
T ss_pred HHHHHHHHHhc
Confidence 55556565543
No 481
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=53.52 E-value=25 Score=23.75 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
-.+..|-...|.++++||--+=+ +......+..++..+. . .+..+|.+|++++.
T Consensus 141 v~laral~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~-~~~tiii~sH~~~~ 194 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGL----------APKIVEEIFEAIRELR---D-EGVTILLVEQNARF 194 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccC----------CHHHHHHHHHHHHHHH---H-CCCEEEEEeCCHHH
Confidence 34556667789999999965322 1123344444444432 2 23466677776653
No 482
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=53.29 E-value=17 Score=28.37 Aligned_cols=75 Identities=27% Similarity=0.393 Sum_probs=43.8
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhh-----cCCC----CCCEEEEEecCCCCCCCccccCCCccc-
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMD-----GMGA----KKNVFIIGATNRPDIIDPAILRPGRLD- 84 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld-----~~~~----~~~v~vi~ttn~~~~ld~al~r~grfd- 84 (110)
...+|+|||..+-. .+-..||.-++ .+.+ .-+|=||++||. ++... ...|+|-
T Consensus 236 GGTLfLDEI~~mpl--------------~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~--dL~~~-v~~G~FRe 298 (464)
T COG2204 236 GGTLFLDEIGEMPL--------------ELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNR--DLEEE-VAAGRFRE 298 (464)
T ss_pred CceEEeeccccCCH--------------HHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCc--CHHHH-HHcCCcHH
Confidence 46899999997721 12222333333 2222 125779999995 34433 3347763
Q ss_pred ------eEEEecCCCHHHHH----HHHHHHhh
Q psy13774 85 ------QLIYIPLPDEIWLI----LSDKFLYK 106 (110)
Q Consensus 85 ------~~i~~~~P~~~~R~----~~~~~~~~ 106 (110)
.++.+.+|.-.+|. .+++++++
T Consensus 299 DLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~ 330 (464)
T COG2204 299 DLYYRLNVVPLRLPPLRERKEDIPLLAEHFLK 330 (464)
T ss_pred HHHhhhccceecCCcccccchhHHHHHHHHHH
Confidence 36788889988885 24555543
No 483
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=53.23 E-value=78 Score=22.33 Aligned_cols=75 Identities=7% Similarity=-0.047 Sum_probs=39.8
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc---cccCCCccceEEEecC
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP---AILRPGRLDQLIYIPL 91 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~---al~r~grfd~~i~~~~ 91 (110)
.-+|+|++++.+.. ......|+..+... ....++|..++.++.-.. .+..-+ -...+.+..
T Consensus 47 ~kliii~~~~~~~~-------------~~~~~~L~~~l~~~--~~~~~~i~~~~~~~~~~~~~k~~~~~~-~~~~i~~~~ 110 (302)
T TIGR01128 47 RRLVELRNPEGKPG-------------AKGLKALEEYLANP--PPDTLLLIEAPKLDKRKKLTKWLKALK-NAQIVECKT 110 (302)
T ss_pred CeEEEEECCCCCCC-------------HHHHHHHHHHHhcC--CCCEEEEEecCCCCHhHHHHHHHHHhc-CeeEEEecC
Confidence 35888888886521 11245666666664 334455555553332111 111100 235688888
Q ss_pred CCHHHHHHHHHHHh
Q psy13774 92 PDEIWLILSDKFLY 105 (110)
Q Consensus 92 P~~~~R~~~~~~~~ 105 (110)
|+..+-..+++..+
T Consensus 111 ~~~~~~~~~i~~~~ 124 (302)
T TIGR01128 111 PKEQELPRWIQARL 124 (302)
T ss_pred CCHHHHHHHHHHHH
Confidence 98888776655443
No 484
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=53.12 E-value=38 Score=23.54 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
-.+..|-...|.++++||--+=+ +......+.+++..+. . . .-+|.+|++++.+.
T Consensus 158 v~laral~~~p~lllLDEP~~gL----------D~~~~~~l~~~l~~~~---~-~-~tvii~sh~~~~~~ 212 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSAL----------DPIATAKIEDLIEDLK---K-E-YTVIIVTHNMQQAA 212 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHh---h-C-ceEEEEEcCHHHHH
Confidence 45566777889999999965322 1123333344444332 2 2 35667777765443
No 485
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=53.09 E-value=43 Score=23.73 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+..++..+. .. +..||.+|++++.+
T Consensus 153 rv~la~al~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tiiivsH~~~~~ 208 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGL----------DPKGRKELMTLFKKLH---QS-GMTIVLVTHLMDDV 208 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeccHHHH
Confidence 445677778899999999966322 1123334444444432 22 44666777776533
No 486
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=52.96 E-value=54 Score=22.07 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+. ......+..++..+. .. +..+|.+|++++.+
T Consensus 144 rv~laral~~~p~illlDEPt~~LD----------~~~~~~l~~~l~~~~---~~-~~tii~~tH~~~~~ 199 (218)
T cd03266 144 KVAIARALVHDPPVLLLDEPTTGLD----------VMATRALREFIRQLR---AL-GKCILFSTHIMQEV 199 (218)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcCCC----------HHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 3456677788999999999663321 123334444444432 22 34566777766543
No 487
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.92 E-value=21 Score=25.47 Aligned_cols=57 Identities=26% Similarity=0.230 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+-+ +......+.+++..+. ...+..++.+|++++.+
T Consensus 149 rl~laraL~~~p~lLilDEPt~gL----------D~~~~~~l~~~l~~l~---~~~g~tillvsH~~~~~ 205 (283)
T PRK13636 149 RVAIAGVLVMEPKVLVLDEPTAGL----------DPMGVSEIMKLLVEMQ---KELGLTIIIATHDIDIV 205 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HhCCCEEEEEecCHHHH
Confidence 345677778899999999966332 1123333444444332 22233566666666543
No 488
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=52.78 E-value=60 Score=22.80 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCeEEEEcc
Q psy13774 5 TGASMARAAAPCVLFFDE 22 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDe 22 (110)
-..++|--+.|.+++-||
T Consensus 146 vaIARAiV~~P~vLlADE 163 (223)
T COG2884 146 VAIARAIVNQPAVLLADE 163 (223)
T ss_pred HHHHHHHccCCCeEeecC
Confidence 356778889999999998
No 489
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=52.60 E-value=26 Score=26.37 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-++.+|-...|.++++||--
T Consensus 152 RVaLARaL~~~P~llLLDEP~ 172 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESL 172 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCC
Confidence 345667778899999999965
No 490
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=52.52 E-value=24 Score=24.95 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. ...+..+|.+|++++.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~L----------D~~~~~~l~~~L~~~~---~~~~~tviivsHd~~~ 196 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGAL----------DALTRIEMQDLIESLW---QQHGFTVLLVTHDVSE 196 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHHH
Confidence 345667777889999999965221 1123334444444332 2223456667777654
No 491
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=52.27 E-value=55 Score=24.44 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP 70 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~ 70 (110)
.+|..+ ..+.+|++|| |.+. +...+..+-..++-+....++..|.+-|..
T Consensus 91 ~vF~~~--~~~~vIILED-Dl~~-------------sPdFf~yf~~~l~~y~~D~~v~~ISa~Ndn 140 (334)
T cd02514 91 QTFNLF--GYSFVIILED-DLDI-------------APDFFSYFQATLPLLEEDPSLWCISAWNDN 140 (334)
T ss_pred HHHHhc--CCCEEEEECC-CCcc-------------CHhHHHHHHHHHHHHhcCCCEEEEEeeccC
Confidence 344433 4678999887 5442 233444444555555567799999998854
No 492
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=52.20 E-value=22 Score=25.20 Aligned_cols=55 Identities=16% Similarity=0.068 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-.+..|-...|.++++||--+-+ +......+.+++..+. .. +..||.+|++++.
T Consensus 150 rv~laraL~~~p~llllDEPt~~L----------D~~~~~~l~~~L~~~~---~~-g~tviivsH~~~~ 204 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGV----------DVKTEARIISLLRELR---DE-GKTMLVSTHNLGS 204 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHH
Confidence 345666777889999999965322 1133344444444432 22 3456677777654
No 493
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=52.11 E-value=22 Score=24.77 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|++++.+
T Consensus 145 rl~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~ 200 (256)
T TIGR03873 145 RVHVARALAQEPKLLLLDEPTNHL----------DVRAQLETLALVRELA---AT-GVTVVAALHDLNLA 200 (256)
T ss_pred HHHHHHHHhcCCCEEEEcCccccC----------CHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHH
Confidence 345667777889999999966322 1123344444444442 22 34567777776654
No 494
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=52.10 E-value=23 Score=24.82 Aligned_cols=57 Identities=5% Similarity=0.072 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-++..|-...|.++++||--+-+.. .....+..++..+. ...+..+|.+|++.+.+
T Consensus 123 rv~iaraL~~~p~llllDEPt~~LD~----------~~~~~l~~~l~~~~---~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 123 RVAIAACLSKDADIYLLDEPSAYLDV----------EQRLMASKVIRRFA---ENNEKTAFVVEHDIIMI 179 (246)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCH----------HHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 34566777889999999996543211 22333333333332 23334667777776543
No 495
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=52.03 E-value=20 Score=25.07 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+ .. . ..+|.+|++++.++
T Consensus 158 rv~laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~---~~-~-~tiii~tH~~~~i~ 213 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSAL----------DPIATMKVEELIHSL---RS-E-LTIAIVTHNMQQAT 213 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccC----------CHHHHHHHHHHHHHH---hc-C-CEEEEEeCCHHHHH
Confidence 345666777899999999965321 112333333444333 22 2 46777778776654
No 496
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=51.87 E-value=21 Score=27.89 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-++..|-...|.++++||--+-+ +......+..++..+. ...+.-||.+|++.+.+
T Consensus 433 rv~la~al~~~p~llllDEPt~~L----------D~~~~~~l~~~l~~~~---~~~~~tvi~vsHd~~~~ 489 (529)
T PRK15134 433 RIAIARALILKPSLIILDEPTSSL----------DKTVQAQILALLKSLQ---QKHQLAYLFISHDLHVV 489 (529)
T ss_pred HHHHHHHHhCCCCEEEeeCCcccc----------CHHHHHHHHHHHHHHH---HhhCCEEEEEeCCHHHH
Confidence 446677778899999999954221 1123333334443332 22234566777776544
No 497
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=51.85 E-value=24 Score=26.47 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=32.2
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
+.+.|.+-+|.++++||==. . -...+.++|-.++-.+....++..++.|.+.+
T Consensus 147 ALARALA~eP~vLLLDEPf~----------A---LDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e 199 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFG----------A---LDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE 199 (345)
T ss_pred HHHHHhhcCCCeEeecCCch----------h---hhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH
Confidence 45667778899999998210 0 11334455555555554555667777777654
No 498
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=51.61 E-value=25 Score=26.11 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-++..|-...|.++++||--
T Consensus 139 RvalAraL~~~p~lllLDEPt 159 (354)
T TIGR02142 139 RVAIGRALLSSPRLLLMDEPL 159 (354)
T ss_pred HHHHHHHHHcCCCEEEEcCCC
Confidence 445667778899999999965
No 499
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=51.59 E-value=30 Score=24.99 Aligned_cols=21 Identities=33% Similarity=0.388 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-.+..|-.+.|.++++||--
T Consensus 141 rv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 141 RVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred HHHHHHHHhcCCCEEEEcCCc
Confidence 456788888999999999955
No 500
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=51.58 E-value=33 Score=23.81 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+-.+..|-...|.++++||--+=+ +......+.+++..+. . . ..+|.+|++++.+
T Consensus 154 rv~laral~~~p~lllLDEPt~~L----------D~~~~~~l~~~l~~~~---~-~-~tiiivtH~~~~~ 208 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASAL----------DPISTAKVEELIHELK---K-D-YTIVIVTHNMQQA 208 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHh---c-C-CeEEEEeCCHHHH
Confidence 345666778899999999965322 1133444444444442 2 2 3456677766543
Done!