Query psy13774
Match_columns 110
No_of_seqs 158 out of 1038
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 20:10:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 2.2E-31 7.6E-36 197.0 11.8 106 2-107 229-334 (405)
2 4b4t_I 26S protease regulatory 100.0 2E-30 6.9E-35 192.9 12.5 106 2-107 263-368 (437)
3 4b4t_L 26S protease subunit RP 100.0 5.2E-30 1.8E-34 191.5 12.7 106 2-107 262-367 (437)
4 4b4t_M 26S protease regulatory 100.0 3.3E-30 1.1E-34 192.4 10.5 106 2-107 262-367 (434)
5 4b4t_K 26S protease regulatory 100.0 1.7E-29 5.7E-34 188.4 11.8 106 2-107 253-359 (428)
6 4b4t_H 26S protease regulatory 100.0 2.2E-29 7.5E-34 188.7 11.3 106 2-107 290-395 (467)
7 3cf2_A TER ATPase, transitiona 100.0 1.7E-29 5.7E-34 199.5 5.7 106 2-107 558-663 (806)
8 3cf2_A TER ATPase, transitiona 99.9 3.7E-26 1.3E-30 180.6 11.1 103 2-107 285-387 (806)
9 3cf0_A Transitional endoplasmi 99.9 6.1E-22 2.1E-26 141.2 11.0 106 2-107 96-201 (301)
10 2ce7_A Cell division protein F 99.9 6.2E-22 2.1E-26 149.3 10.8 106 2-107 96-201 (476)
11 2x8a_A Nuclear valosin-contain 99.9 2E-21 6.8E-26 137.4 9.6 103 2-107 91-193 (274)
12 1lv7_A FTSH; alpha/beta domain 99.8 5.7E-20 2E-24 127.7 13.0 105 2-106 92-196 (257)
13 1xwi_A SKD1 protein; VPS4B, AA 99.8 1E-19 3.5E-24 131.0 12.0 101 2-107 93-194 (322)
14 3h4m_A Proteasome-activating n 99.8 2.7E-19 9.2E-24 125.6 9.9 106 2-107 98-203 (285)
15 2qz4_A Paraplegin; AAA+, SPG7, 99.8 3.4E-19 1.2E-23 123.3 10.1 105 2-106 86-191 (262)
16 3eie_A Vacuolar protein sortin 99.8 3.5E-19 1.2E-23 127.8 10.0 101 2-107 98-199 (322)
17 2dhr_A FTSH; AAA+ protein, hex 99.8 1.4E-19 4.7E-24 137.2 8.0 105 2-106 111-215 (499)
18 1ypw_A Transitional endoplasmi 99.8 1.1E-21 3.9E-26 155.3 -3.8 106 2-107 558-663 (806)
19 3hu3_A Transitional endoplasmi 99.8 5E-19 1.7E-23 133.9 10.5 103 2-107 285-387 (489)
20 1ixz_A ATP-dependent metallopr 99.8 1.2E-18 4E-23 120.9 9.9 105 2-106 96-200 (254)
21 3t15_A Ribulose bisphosphate c 99.8 3.2E-19 1.1E-23 126.9 7.2 102 2-106 83-199 (293)
22 2qp9_X Vacuolar protein sortin 99.8 1.1E-18 3.9E-23 127.0 9.7 101 2-107 131-232 (355)
23 2zan_A Vacuolar protein sortin 99.8 1.6E-18 5.6E-23 129.4 10.7 101 2-107 215-316 (444)
24 1iy2_A ATP-dependent metallopr 99.7 7.4E-18 2.5E-22 118.5 10.2 105 2-106 120-224 (278)
25 2r62_A Cell division protease 99.7 1.4E-18 4.9E-23 121.0 2.1 104 3-106 92-197 (268)
26 3vfd_A Spastin; ATPase, microt 99.7 1E-16 3.6E-21 117.5 9.8 101 2-107 195-297 (389)
27 3b9p_A CG5977-PA, isoform A; A 99.7 1.3E-16 4.5E-21 112.5 9.2 101 2-107 101-204 (297)
28 3d8b_A Fidgetin-like protein 1 99.7 2.3E-16 7.9E-21 114.7 9.5 100 3-107 165-266 (357)
29 1ypw_A Transitional endoplasmi 99.6 1.4E-15 4.7E-20 120.7 11.2 102 2-106 285-386 (806)
30 2c9o_A RUVB-like 1; hexameric 99.4 8.7E-15 3E-19 109.5 -2.5 92 3-94 112-226 (456)
31 1g41_A Heat shock protein HSLU 99.2 5.9E-13 2E-17 99.7 -1.0 88 2-101 99-188 (444)
32 3syl_A Protein CBBX; photosynt 99.2 2.4E-11 8.1E-16 85.7 6.0 92 3-106 122-218 (309)
33 1d2n_A N-ethylmaleimide-sensit 99.1 6.1E-11 2.1E-15 82.7 5.0 86 3-94 113-200 (272)
34 3m6a_A ATP-dependent protease 99.1 4.3E-11 1.5E-15 91.4 4.3 89 3-105 165-266 (543)
35 1jbk_A CLPB protein; beta barr 99.0 2.3E-10 8E-15 74.3 4.0 86 3-101 103-194 (195)
36 1ofh_A ATP-dependent HSL prote 99.0 4.6E-10 1.6E-14 78.7 5.0 86 13-102 115-212 (310)
37 1r6b_X CLPA protein; AAA+, N-t 99.0 1.9E-09 6.5E-14 84.6 8.0 93 2-106 266-363 (758)
38 3hws_A ATP-dependent CLP prote 98.9 3E-09 1E-13 77.1 6.6 98 4-103 102-267 (363)
39 1qvr_A CLPB protein; coiled co 98.8 2.9E-09 9.8E-14 84.9 5.6 92 2-106 250-346 (854)
40 3pfi_A Holliday junction ATP-d 98.8 1.5E-08 5.3E-13 72.2 8.1 78 13-106 105-198 (338)
41 2v1u_A Cell division control p 98.8 2.9E-08 9.8E-13 71.2 8.2 90 6-106 121-215 (387)
42 2p65_A Hypothetical protein PF 98.8 2.8E-09 9.5E-14 69.2 2.6 79 3-93 103-187 (187)
43 1hqc_A RUVB; extended AAA-ATPa 98.8 6.9E-08 2.4E-12 68.2 9.7 78 13-106 89-182 (324)
44 3uk6_A RUVB-like 2; hexameric 98.7 3.4E-08 1.2E-12 71.0 7.6 73 15-106 190-273 (368)
45 3u61_B DNA polymerase accessor 98.7 3.4E-08 1.2E-12 70.1 6.7 73 14-104 105-177 (324)
46 4fcw_A Chaperone protein CLPB; 98.7 4.3E-08 1.5E-12 68.9 7.0 80 11-106 116-230 (311)
47 3pxi_A Negative regulator of g 98.6 4.7E-08 1.6E-12 76.9 6.4 80 2-106 255-339 (758)
48 1g8p_A Magnesium-chelatase 38 98.6 2.2E-07 7.5E-12 66.1 9.2 74 14-103 144-230 (350)
49 3pxi_A Negative regulator of g 98.6 1.5E-07 5E-12 74.1 8.9 84 7-106 572-676 (758)
50 2chg_A Replication factor C sm 98.6 1.8E-07 6.3E-12 61.7 8.0 74 13-105 101-174 (226)
51 1r6b_X CLPA protein; AAA+, N-t 98.6 1.6E-07 5.4E-12 73.8 8.5 84 7-106 550-667 (758)
52 2r44_A Uncharacterized protein 98.6 2.4E-07 8.1E-12 66.0 8.2 75 16-106 111-199 (331)
53 3te6_A Regulatory protein SIR3 98.6 1.9E-07 6.5E-12 67.2 7.5 87 3-106 119-212 (318)
54 2qby_B CDC6 homolog 3, cell di 98.5 1.8E-07 6.3E-12 67.2 6.9 82 6-106 126-211 (384)
55 3pxg_A Negative regulator of g 98.5 1.9E-07 6.6E-12 70.0 7.0 80 2-106 255-339 (468)
56 1njg_A DNA polymerase III subu 98.5 5.3E-07 1.8E-11 60.0 8.4 74 14-106 126-199 (250)
57 2qby_A CDC6 homolog 1, cell di 98.5 5.7E-07 2E-11 64.2 8.4 89 5-106 118-211 (386)
58 1a5t_A Delta prime, HOLB; zinc 98.4 1.3E-06 4.4E-11 62.7 9.0 82 3-103 93-178 (334)
59 1um8_A ATP-dependent CLP prote 98.4 8.4E-07 2.9E-11 64.3 7.6 88 13-102 136-283 (376)
60 2z4s_A Chromosomal replication 98.4 3.6E-07 1.2E-11 68.1 5.7 81 12-106 192-277 (440)
61 1l8q_A Chromosomal replication 98.4 7.1E-07 2.4E-11 63.4 6.5 78 14-106 98-180 (324)
62 1sxj_B Activator 1 37 kDa subu 98.4 2E-06 6.7E-11 60.3 8.3 73 14-105 107-179 (323)
63 4akg_A Glutathione S-transfera 98.4 1.4E-06 4.7E-11 76.3 8.6 85 14-107 1336-1433(2695)
64 3pvs_A Replication-associated 98.3 9.9E-07 3.4E-11 66.0 6.7 83 3-106 91-179 (447)
65 1jr3_A DNA polymerase III subu 98.3 3.3E-06 1.1E-10 60.4 9.0 84 3-105 104-191 (373)
66 2chq_A Replication factor C sm 98.3 1.6E-06 5.6E-11 60.6 6.6 75 13-106 101-175 (319)
67 1sxj_E Activator 1 40 kDa subu 98.3 4.9E-06 1.7E-10 59.4 8.9 73 14-105 134-206 (354)
68 3bos_A Putative DNA replicatio 98.2 7.7E-07 2.6E-11 59.7 3.6 80 13-106 103-188 (242)
69 1fnn_A CDC6P, cell division co 98.2 3.3E-06 1.1E-10 60.6 7.0 78 13-106 124-207 (389)
70 1iqp_A RFCS; clamp loader, ext 98.2 5.3E-06 1.8E-10 58.2 7.7 74 13-105 109-182 (327)
71 3f9v_A Minichromosome maintena 98.2 3.1E-06 1.1E-10 65.3 6.1 76 14-106 391-491 (595)
72 1sxj_D Activator 1 41 kDa subu 98.2 6.2E-06 2.1E-10 58.6 7.2 73 14-105 133-205 (353)
73 2gno_A DNA polymerase III, gam 98.1 8E-06 2.7E-10 58.2 7.3 81 3-104 67-151 (305)
74 1qvr_A CLPB protein; coiled co 98.0 1.1E-05 3.8E-10 64.4 7.1 83 8-106 654-771 (854)
75 3nbx_X ATPase RAVA; AAA+ ATPas 98.0 1E-05 3.6E-10 61.3 6.0 74 14-103 109-194 (500)
76 3cmw_A Protein RECA, recombina 98.0 4.7E-06 1.6E-10 70.7 4.3 72 2-74 1148-1223(1706)
77 2c9o_A RUVB-like 1; hexameric 98.0 2.4E-05 8.1E-10 58.3 7.3 72 15-105 296-379 (456)
78 1g41_A Heat shock protein HSLU 97.9 4E-05 1.4E-09 57.4 7.9 82 16-101 252-345 (444)
79 1sxj_A Activator 1 95 kDa subu 97.9 9.4E-05 3.2E-09 55.9 9.4 77 12-105 146-222 (516)
80 2r2a_A Uncharacterized protein 97.8 4.5E-05 1.5E-09 51.3 6.3 72 13-96 86-157 (199)
81 1sxj_C Activator 1 40 kDa subu 97.7 0.0002 6.9E-09 51.0 8.0 72 15-105 111-182 (340)
82 1w5s_A Origin recognition comp 97.6 8.2E-05 2.8E-09 53.7 5.7 83 13-105 137-228 (412)
83 1in4_A RUVB, holliday junction 97.5 0.00051 1.8E-08 49.1 8.2 44 60-105 150-193 (334)
84 2bjv_A PSP operon transcriptio 97.3 0.0002 6.8E-09 49.2 4.0 67 14-97 100-182 (265)
85 1ojl_A Transcriptional regulat 97.3 0.00016 5.6E-09 51.2 3.6 66 15-97 97-178 (304)
86 3k1j_A LON protease, ATP-depen 96.6 0.00044 1.5E-08 53.3 0.9 30 59-90 251-285 (604)
87 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0014 4.9E-08 47.3 3.3 69 4-77 174-242 (331)
88 3n70_A Transport activator; si 96.0 0.013 4.4E-07 36.7 5.1 47 5-70 70-116 (145)
89 3vkg_A Dynein heavy chain, cyt 96.0 0.032 1.1E-06 50.4 9.0 83 15-105 1375-1469(3245)
90 2fna_A Conserved hypothetical 96.0 0.17 5.9E-06 35.1 11.4 87 3-104 124-221 (357)
91 3cmu_A Protein RECA, recombina 96.0 0.0094 3.2E-07 51.8 5.5 66 3-68 1494-1562(2050)
92 1svm_A Large T antigen; AAA+ f 95.9 0.0026 9E-08 46.6 1.5 72 10-91 212-284 (377)
93 2qen_A Walker-type ATPase; unk 95.7 0.25 8.5E-06 34.3 11.3 79 14-104 128-215 (350)
94 3co5_A Putative two-component 95.7 0.011 3.9E-07 36.9 3.8 42 14-70 75-116 (143)
95 3f8t_A Predicted ATPase involv 95.5 0.017 5.7E-07 43.9 4.7 65 16-96 302-385 (506)
96 4ag6_A VIRB4 ATPase, type IV s 95.5 0.1 3.5E-06 37.7 8.6 83 6-102 252-344 (392)
97 2kjq_A DNAA-related protein; s 94.5 0.015 5.2E-07 36.8 1.7 61 13-90 82-146 (149)
98 2iut_A DNA translocase FTSK; n 94.2 0.13 4.6E-06 39.6 6.7 73 16-101 345-419 (574)
99 1jr3_D DNA polymerase III, del 93.8 0.22 7.4E-06 35.2 6.7 84 3-105 61-155 (343)
100 4akg_A Glutathione S-transfera 92.9 0.55 1.9E-05 42.2 9.0 84 3-101 687-789 (2695)
101 2ius_A DNA translocase FTSK; n 90.1 0.42 1.4E-05 36.4 4.8 75 14-101 296-373 (512)
102 3dzd_A Transcriptional regulat 89.8 0.52 1.8E-05 34.0 4.9 66 15-97 223-304 (368)
103 3ec2_A DNA replication protein 89.7 0.59 2E-05 29.6 4.7 46 13-71 99-144 (180)
104 3cmu_A Protein RECA, recombina 89.7 0.54 1.8E-05 41.3 5.6 73 2-74 794-873 (2050)
105 1n0w_A DNA repair protein RAD5 89.3 0.65 2.2E-05 30.6 4.8 67 6-73 111-177 (243)
106 2ehv_A Hypothetical protein PH 85.9 3.2 0.00011 27.2 6.7 73 7-90 128-206 (251)
107 2cvh_A DNA repair and recombin 85.5 0.52 1.8E-05 30.5 2.5 16 14-29 105-120 (220)
108 1ye8_A Protein THEP1, hypothet 85.3 2.1 7.2E-05 27.5 5.4 14 11-24 96-109 (178)
109 2krk_A 26S protease regulatory 84.9 0.66 2.3E-05 26.6 2.5 20 88-107 7-26 (86)
110 1e9r_A Conjugal transfer prote 84.8 2.5 8.6E-05 30.7 6.2 72 13-103 278-359 (437)
111 1xp8_A RECA protein, recombina 84.3 1.9 6.5E-05 31.2 5.2 60 10-69 148-210 (366)
112 3vkg_A Dynein heavy chain, cyt 82.5 6.7 0.00023 36.2 8.7 40 59-101 706-749 (3245)
113 2zr9_A Protein RECA, recombina 82.3 0.59 2E-05 33.6 1.9 20 9-28 134-153 (349)
114 1g6h_A High-affinity branched- 80.5 3.7 0.00013 27.9 5.3 56 5-74 162-217 (257)
115 2w0m_A SSO2452; RECA, SSPF, un 80.5 1.7 6E-05 28.0 3.6 54 6-70 113-168 (235)
116 2yz2_A Putative ABC transporte 80.3 3.7 0.00013 28.1 5.3 57 4-74 146-202 (266)
117 1ny5_A Transcriptional regulat 79.9 2.6 8.9E-05 30.4 4.6 66 15-97 232-313 (387)
118 2zu0_C Probable ATP-dependent 78.4 5.5 0.00019 27.3 5.7 54 5-72 173-226 (267)
119 3hr8_A Protein RECA; alpha and 77.8 6.1 0.00021 28.5 6.0 57 10-66 135-194 (356)
120 2z43_A DNA repair and recombin 77.5 1.3 4.5E-05 31.1 2.4 63 5-68 193-256 (324)
121 3gfo_A Cobalt import ATP-bindi 77.1 3.9 0.00013 28.3 4.7 58 4-74 151-208 (275)
122 1cr0_A DNA primase/helicase; R 76.7 1.5 5E-05 30.1 2.4 21 8-28 141-161 (296)
123 4a74_A DNA repair and recombin 75.4 1.4 4.7E-05 28.6 1.9 60 12-72 123-182 (231)
124 3f6c_A Positive transcription 75.1 9.7 0.00033 21.9 5.8 19 4-22 36-54 (134)
125 3cg4_A Response regulator rece 74.6 10 0.00035 22.1 8.3 20 3-22 40-59 (142)
126 2ghi_A Transport protein; mult 74.5 11 0.00038 25.6 6.4 54 5-73 164-217 (260)
127 2ixe_A Antigen peptide transpo 74.2 12 0.00041 25.6 6.5 55 4-71 164-218 (271)
128 3lda_A DNA repair protein RAD5 73.6 1.8 6.3E-05 31.7 2.3 64 6-70 265-328 (400)
129 2pjz_A Hypothetical protein ST 73.2 15 0.00052 25.1 6.8 21 4-24 136-156 (263)
130 2qr3_A Two-component system re 72.8 6 0.0002 23.1 4.2 20 3-22 36-55 (140)
131 3eod_A Protein HNR; response r 72.8 4.7 0.00016 23.3 3.7 19 4-22 41-59 (130)
132 1v5w_A DMC1, meiotic recombina 72.6 2.6 8.7E-05 30.0 2.8 65 6-71 209-275 (343)
133 4e7p_A Response regulator; DNA 71.2 6.9 0.00023 23.3 4.3 20 3-22 55-74 (150)
134 4g1u_C Hemin import ATP-bindin 69.9 7.4 0.00025 26.6 4.6 54 6-72 151-210 (266)
135 2ff7_A Alpha-hemolysin translo 69.6 12 0.00042 25.1 5.7 54 4-72 153-206 (247)
136 2i1q_A DNA repair and recombin 69.5 2 6.7E-05 30.0 1.6 61 6-67 195-256 (322)
137 2pcj_A ABC transporter, lipopr 69.4 7.5 0.00025 25.8 4.5 21 4-24 148-168 (224)
138 3cnb_A DNA-binding response re 69.3 12 0.00042 21.6 5.1 20 3-22 43-62 (143)
139 3tif_A Uncharacterized ABC tra 69.3 4.8 0.00016 27.0 3.5 55 4-71 153-207 (235)
140 2r6a_A DNAB helicase, replicat 68.6 3.4 0.00012 30.4 2.9 19 11-29 310-328 (454)
141 2nq2_C Hypothetical ABC transp 68.0 9.6 0.00033 25.8 4.9 56 4-72 136-191 (253)
142 3cz5_A Two-component response 67.5 9.3 0.00032 22.8 4.3 20 3-22 40-59 (153)
143 1uhe_A Aspartate 1-decarboxyla 67.3 4.1 0.00014 24.1 2.4 22 7-28 69-90 (97)
144 3eul_A Possible nitrate/nitrit 67.0 9.6 0.00033 22.7 4.3 20 3-22 50-69 (152)
145 1sgw_A Putative ABC transporte 66.9 17 0.00058 24.0 5.8 56 5-74 142-197 (214)
146 3kta_B Chromosome segregation 66.6 15 0.00053 23.4 5.4 15 13-27 85-99 (173)
147 1vc3_B L-aspartate-alpha-decar 66.4 3.6 0.00012 24.3 2.0 21 7-27 71-91 (96)
148 2d2e_A SUFC protein; ABC-ATPas 66.4 12 0.0004 25.2 5.0 55 5-73 152-206 (250)
149 4aby_A DNA repair protein RECN 65.5 18 0.00062 25.8 6.1 18 9-26 308-327 (415)
150 2olj_A Amino acid ABC transpor 65.5 11 0.00038 25.7 4.8 55 4-72 167-221 (263)
151 1pzn_A RAD51, DNA repair and r 65.5 3.8 0.00013 29.2 2.5 61 13-74 230-290 (349)
152 2w58_A DNAI, primosome compone 65.2 5.3 0.00018 25.4 3.0 13 15-27 116-128 (202)
153 3cg0_A Response regulator rece 64.7 12 0.00042 21.6 4.4 19 4-22 44-62 (140)
154 3plx_B Aspartate 1-decarboxyla 64.6 4.9 0.00017 24.0 2.4 21 7-27 70-90 (102)
155 1b0u_A Histidine permease; ABC 64.4 9.5 0.00033 25.9 4.3 55 4-72 161-215 (262)
156 1t6n_A Probable ATP-dependent 64.3 6.9 0.00024 25.2 3.4 13 15-27 159-171 (220)
157 3hzh_A Chemotaxis response reg 64.1 5.9 0.0002 24.0 2.9 20 3-22 70-91 (157)
158 3iuy_A Probable ATP-dependent 63.5 3.3 0.00011 27.0 1.7 14 15-28 168-181 (228)
159 3cmw_A Protein RECA, recombina 62.8 8.2 0.00028 33.6 4.3 66 3-68 1498-1566(1706)
160 3io5_A Recombination and repai 62.7 11 0.00038 27.1 4.4 56 11-66 108-168 (333)
161 3auy_A DNA double-strand break 62.1 24 0.00082 25.0 6.2 18 9-26 299-317 (371)
162 2i3b_A HCR-ntpase, human cance 62.0 5.4 0.00018 25.9 2.6 16 11-26 102-117 (189)
163 3n53_A Response regulator rece 61.9 21 0.00071 20.7 8.8 61 3-79 35-97 (140)
164 1u94_A RECA protein, recombina 61.9 4.9 0.00017 28.9 2.5 59 10-68 137-198 (356)
165 2ihy_A ABC transporter, ATP-bi 61.8 7.1 0.00024 27.0 3.3 20 5-24 170-189 (279)
166 2cbz_A Multidrug resistance-as 61.8 32 0.0011 22.8 7.3 20 5-24 136-155 (237)
167 2zay_A Response regulator rece 61.7 14 0.00048 21.6 4.3 19 4-22 42-60 (147)
168 1dbw_A Transcriptional regulat 61.6 19 0.00065 20.4 4.8 19 4-22 37-55 (126)
169 3b2n_A Uncharacterized protein 61.6 12 0.00042 21.6 4.0 19 4-22 39-57 (133)
170 3tui_C Methionine import ATP-b 61.4 9 0.00031 27.8 3.8 56 4-72 171-226 (366)
171 3kht_A Response regulator; PSI 61.1 17 0.00057 21.3 4.6 20 3-22 40-59 (144)
172 1q0u_A Bstdead; DEAD protein, 60.8 4.6 0.00016 26.1 2.1 14 15-28 151-164 (219)
173 1vec_A ATP-dependent RNA helic 60.3 4.7 0.00016 25.7 2.0 14 14-27 146-159 (206)
174 1qde_A EIF4A, translation init 60.2 4.1 0.00014 26.3 1.7 14 15-28 156-169 (224)
175 2gxq_A Heat resistant RNA depe 60.1 3.7 0.00013 26.1 1.5 14 15-28 145-158 (207)
176 1uuz_A IVY, inhibitor of verte 59.4 25 0.00087 22.0 5.2 40 67-106 85-124 (137)
177 1w1w_A Structural maintenance 59.1 19 0.00066 26.0 5.3 15 13-27 354-368 (430)
178 3qkt_A DNA double-strand break 59.1 33 0.0011 24.0 6.4 18 7-24 265-282 (339)
179 1vpl_A ABC transporter, ATP-bi 58.6 15 0.00052 24.9 4.5 54 4-71 154-207 (256)
180 3b85_A Phosphate starvation-in 58.4 4.7 0.00016 26.6 1.8 49 7-75 115-163 (208)
181 1f2t_B RAD50 ABC-ATPase; DNA d 58.3 30 0.001 21.4 5.7 16 9-24 76-91 (148)
182 2qvg_A Two component response 58.2 25 0.00084 20.3 5.2 19 4-22 43-67 (143)
183 3h5i_A Response regulator/sens 57.5 26 0.00088 20.4 8.3 19 4-22 39-58 (140)
184 1nlf_A Regulatory protein REPA 57.3 6.7 0.00023 26.6 2.5 16 13-28 132-147 (279)
185 2q6t_A DNAB replication FORK h 57.1 8.6 0.00029 28.1 3.2 19 10-28 306-324 (444)
186 1ji0_A ABC transporter; ATP bi 56.9 19 0.00063 24.1 4.6 20 5-24 148-167 (240)
187 3lua_A Response regulator rece 56.7 6.1 0.00021 23.2 2.0 18 4-21 39-57 (140)
188 3fe2_A Probable ATP-dependent 56.6 5.7 0.0002 26.2 2.0 14 15-28 177-190 (242)
189 3jte_A Response regulator rece 56.5 16 0.00053 21.3 3.8 19 4-22 37-57 (143)
190 2gkg_A Response regulator homo 56.4 24 0.00082 19.7 4.9 19 4-22 39-57 (127)
191 3bor_A Human initiation factor 56.2 4.3 0.00015 26.7 1.3 14 15-28 174-187 (237)
192 2pl1_A Transcriptional regulat 56.2 24 0.00083 19.6 5.1 19 4-22 34-52 (121)
193 3dkp_A Probable ATP-dependent 55.4 9.7 0.00033 25.0 3.0 15 15-29 176-190 (245)
194 3cfy_A Putative LUXO repressor 55.4 21 0.00071 20.8 4.3 19 4-22 38-56 (137)
195 2qzj_A Two-component response 55.1 29 0.00098 20.1 4.9 19 4-22 38-56 (136)
196 2pl3_A Probable ATP-dependent 55.0 7.1 0.00024 25.5 2.2 13 15-27 172-184 (236)
197 2zts_A Putative uncharacterize 54.3 40 0.0014 21.6 6.0 26 4-29 125-150 (251)
198 2rjn_A Response regulator rece 53.6 13 0.00044 22.1 3.2 19 4-22 41-59 (154)
199 3lte_A Response regulator; str 53.5 29 0.00098 19.7 4.8 20 3-22 39-58 (132)
200 3ber_A Probable ATP-dependent 53.2 6.8 0.00023 26.1 1.9 14 15-28 187-200 (249)
201 3d31_A Sulfate/molybdate ABC t 52.8 15 0.00053 26.2 3.8 19 5-23 136-154 (348)
202 3gt7_A Sensor protein; structu 52.2 25 0.00084 20.9 4.3 20 3-22 40-59 (154)
203 1e69_A Chromosome segregation 52.2 25 0.00085 24.4 4.8 14 13-26 240-253 (322)
204 3b6e_A Interferon-induced heli 51.8 30 0.001 21.7 4.9 14 14-27 162-175 (216)
205 2dr3_A UPF0273 protein PH0284; 51.7 45 0.0015 21.4 6.3 53 6-69 120-172 (247)
206 1z47_A CYSA, putative ABC-tran 51.4 15 0.00051 26.4 3.6 19 5-23 154-172 (355)
207 3fmo_B ATP-dependent RNA helic 51.4 9.1 0.00031 26.4 2.4 13 15-27 236-248 (300)
208 1jbe_A Chemotaxis protein CHEY 50.8 32 0.0011 19.4 4.9 19 4-22 39-57 (128)
209 3hv2_A Response regulator/HD d 50.8 16 0.00055 21.7 3.3 20 3-22 47-66 (153)
210 3fvq_A Fe(3+) IONS import ATP- 50.8 21 0.00071 25.8 4.3 20 4-23 146-165 (359)
211 3bh0_A DNAB-like replicative h 50.8 23 0.00077 24.6 4.4 52 11-68 176-229 (315)
212 1g29_1 MALK, maltose transport 50.6 15 0.00052 26.5 3.5 21 4-24 147-167 (372)
213 2oxc_A Probable ATP-dependent 50.4 7 0.00024 25.5 1.6 14 15-28 167-180 (230)
214 1ys7_A Transcriptional regulat 50.3 46 0.0016 21.1 9.4 63 4-83 41-103 (233)
215 3crn_A Response regulator rece 50.2 24 0.00082 20.3 3.9 19 4-22 37-55 (132)
216 1kgs_A DRRD, DNA binding respo 50.1 35 0.0012 21.5 5.0 19 4-22 36-54 (225)
217 1pqh_A Aspartate 1-decarboxyla 49.9 9.5 0.00032 24.1 2.0 22 7-28 112-133 (143)
218 3llm_A ATP-dependent RNA helic 49.8 19 0.00067 23.5 3.8 13 13-25 175-187 (235)
219 2qxy_A Response regulator; reg 49.6 24 0.00082 20.4 3.9 20 3-22 37-56 (142)
220 2yyz_A Sugar ABC transporter, 49.6 16 0.00054 26.3 3.5 20 4-23 141-160 (359)
221 2onk_A Molybdate/tungstate ABC 48.9 7.5 0.00026 26.2 1.6 21 4-24 134-154 (240)
222 3cu5_A Two component transcrip 48.5 38 0.0013 19.7 7.1 19 4-22 39-57 (141)
223 3rlf_A Maltose/maltodextrin im 48.4 15 0.00051 26.8 3.2 19 5-23 142-160 (381)
224 2c45_A Aspartate 1-decarboxyla 48.3 9.3 0.00032 24.0 1.8 22 7-28 95-116 (139)
225 3hdg_A Uncharacterized protein 48.1 9 0.00031 22.2 1.7 20 3-22 40-59 (137)
226 1v43_A Sugar-binding transport 47.8 19 0.00065 26.0 3.7 21 4-24 149-169 (372)
227 1tmy_A CHEY protein, TMY; chem 46.6 27 0.00092 19.4 3.7 19 4-22 37-55 (120)
228 3r0j_A Possible two component 46.5 41 0.0014 21.9 5.0 20 3-22 56-75 (250)
229 1q57_A DNA primase/helicase; d 46.4 23 0.0008 26.2 4.1 54 10-69 350-405 (503)
230 2orw_A Thymidine kinase; TMTK, 46.4 11 0.00038 24.1 2.1 13 14-26 76-88 (184)
231 3i42_A Response regulator rece 46.3 38 0.0013 19.0 6.7 20 3-22 36-55 (127)
232 1g5t_A COB(I)alamin adenosyltr 46.2 43 0.0015 22.0 4.9 68 4-89 106-177 (196)
233 2xau_A PRE-mRNA-splicing facto 45.8 15 0.00051 29.1 3.1 15 11-25 205-219 (773)
234 3eiq_A Eukaryotic initiation f 45.7 9.9 0.00034 26.7 1.9 13 15-27 184-196 (414)
235 1mvo_A PHOP response regulator 45.7 40 0.0014 19.1 7.2 19 4-22 37-55 (136)
236 1a04_A Nitrate/nitrite respons 45.5 35 0.0012 21.5 4.4 19 4-22 41-59 (215)
237 1dz3_A Stage 0 sporulation pro 45.2 32 0.0011 19.5 3.9 19 4-22 38-56 (130)
238 1hv8_A Putative ATP-dependent 45.1 9.4 0.00032 26.2 1.7 13 15-27 148-160 (367)
239 3f6p_A Transcriptional regulat 45.1 40 0.0014 18.9 5.3 19 4-22 36-54 (120)
240 1srr_A SPO0F, sporulation resp 44.9 14 0.00048 20.9 2.2 19 4-22 37-55 (124)
241 2qgz_A Helicase loader, putati 44.5 5.1 0.00017 28.0 0.2 13 14-26 214-226 (308)
242 1s2m_A Putative ATP-dependent 44.4 22 0.00077 24.8 3.6 13 15-27 164-176 (400)
243 3ly5_A ATP-dependent RNA helic 44.1 8.4 0.00029 25.9 1.2 14 15-28 202-215 (262)
244 3qf7_A RAD50; ABC-ATPase, ATPa 44.0 82 0.0028 22.3 6.5 12 13-24 302-313 (365)
245 1qkk_A DCTD, C4-dicarboxylate 43.2 12 0.00041 22.3 1.8 18 5-22 38-55 (155)
246 1yio_A Response regulatory pro 43.1 58 0.002 20.2 6.7 59 5-79 39-97 (208)
247 3kcn_A Adenylate cyclase homol 42.5 22 0.00076 21.0 3.0 19 4-22 37-56 (151)
248 3ozx_A RNAse L inhibitor; ATP 42.4 32 0.0011 26.1 4.3 20 4-23 393-412 (538)
249 3ilh_A Two component response 42.3 30 0.001 19.9 3.5 19 4-22 45-68 (146)
250 2j0s_A ATP-dependent RNA helic 41.8 15 0.0005 25.9 2.3 13 15-27 180-192 (410)
251 3nhm_A Response regulator; pro 41.6 47 0.0016 18.7 8.8 20 3-22 36-55 (133)
252 1tf7_A KAIC; homohexamer, hexa 41.3 61 0.0021 24.1 5.7 59 7-74 131-189 (525)
253 2qi9_C Vitamin B12 import ATP- 41.1 29 0.00099 23.4 3.6 53 6-72 136-195 (249)
254 1xti_A Probable ATP-dependent 40.9 27 0.00091 24.2 3.5 14 14-27 152-165 (391)
255 2b4a_A BH3024; flavodoxin-like 40.6 51 0.0017 18.8 6.3 19 4-22 49-68 (138)
256 2p6r_A Afuhel308 helicase; pro 40.4 36 0.0012 26.2 4.4 14 15-28 139-152 (702)
257 3hdv_A Response regulator; PSI 40.4 50 0.0017 18.7 4.6 19 4-22 41-60 (136)
258 1zgz_A Torcad operon transcrip 40.2 48 0.0016 18.4 4.3 19 4-22 36-54 (122)
259 3pey_A ATP-dependent RNA helic 40.0 18 0.0006 25.0 2.4 14 15-28 146-159 (395)
260 1k68_A Phytochrome response re 39.9 44 0.0015 18.9 4.0 19 4-22 38-63 (140)
261 2b8t_A Thymidine kinase; deoxy 39.3 24 0.00082 23.5 2.9 23 4-26 75-101 (223)
262 3tbk_A RIG-I helicase domain; 38.6 67 0.0023 23.2 5.5 13 15-27 128-140 (555)
263 2pln_A HP1043, response regula 38.5 39 0.0013 19.4 3.6 16 4-19 52-67 (137)
264 2qv0_A Protein MRKE; structura 38.2 57 0.0019 18.7 6.7 19 4-22 45-63 (143)
265 2jba_A Phosphate regulon trans 36.7 35 0.0012 19.1 3.1 13 9-21 41-53 (127)
266 3fht_A ATP-dependent RNA helic 36.3 20 0.00069 25.0 2.3 14 15-28 169-182 (412)
267 3szy_A Phosphonoacetate hydrol 35.9 34 0.0012 25.1 3.5 23 9-31 199-221 (427)
268 1tue_A Replication protein E1; 35.7 21 0.00073 23.9 2.2 27 61-90 148-177 (212)
269 1k66_A Phytochrome response re 35.6 63 0.0022 18.5 4.6 10 13-22 61-70 (149)
270 3j16_B RLI1P; ribosome recycli 35.6 1.2E+02 0.004 23.4 6.5 55 5-73 230-284 (608)
271 1fuu_A Yeast initiation factor 35.5 14 0.00048 25.7 1.3 15 14-28 162-176 (394)
272 3b60_A Lipid A export ATP-bind 35.3 80 0.0027 23.9 5.6 19 6-24 490-508 (582)
273 3bk7_A ABC transporter ATP-bin 34.8 61 0.0021 24.9 4.9 21 4-24 236-256 (607)
274 4a82_A Cystic fibrosis transme 34.7 1.3E+02 0.0044 22.7 6.6 19 6-24 487-505 (578)
275 1o6d_A Hypothetical UPF0247 pr 34.4 90 0.0031 19.9 7.3 43 59-106 96-141 (163)
276 2z0m_A 337AA long hypothetical 34.0 18 0.00061 24.4 1.7 14 15-28 130-143 (337)
277 1yqt_A RNAse L inhibitor; ATP- 33.6 66 0.0022 24.3 4.8 20 4-23 166-185 (538)
278 2l8b_A Protein TRAI, DNA helic 33.2 29 0.001 22.9 2.5 39 15-70 122-161 (189)
279 2pze_A Cystic fibrosis transme 33.1 32 0.0011 22.7 2.8 21 4-24 138-158 (229)
280 1s8n_A Putative antiterminator 33.0 88 0.003 19.4 4.9 18 4-21 48-65 (205)
281 4f92_B U5 small nuclear ribonu 32.8 37 0.0013 29.6 3.6 46 15-67 208-253 (1724)
282 3q9s_A DNA-binding response re 32.6 50 0.0017 21.6 3.7 20 3-22 70-89 (249)
283 2o0j_A Terminase, DNA packagin 32.4 1.4E+02 0.0046 21.6 6.2 18 9-26 268-285 (385)
284 3i5x_A ATP-dependent RNA helic 32.4 32 0.0011 25.5 2.9 14 14-27 226-239 (563)
285 3lmb_A Uncharacterized protein 32.3 64 0.0022 20.4 4.0 32 76-107 94-125 (165)
286 3bgw_A DNAB-like replicative h 32.2 55 0.0019 24.0 4.1 53 10-68 304-358 (444)
287 3fmp_B ATP-dependent RNA helic 31.6 31 0.001 25.0 2.6 14 14-27 235-248 (479)
288 3kto_A Response regulator rece 31.6 17 0.00059 21.0 1.1 17 6-22 42-58 (136)
289 3b5x_A Lipid A export ATP-bind 31.3 80 0.0027 23.9 5.0 19 6-24 490-508 (582)
290 3bk7_A ABC transporter ATP-bin 31.1 58 0.002 25.0 4.2 19 5-23 480-498 (607)
291 1mv5_A LMRA, multidrug resista 30.7 31 0.001 23.0 2.4 21 5-25 148-168 (243)
292 3ozx_A RNAse L inhibitor; ATP 30.2 1.3E+02 0.0044 22.7 5.9 19 6-24 148-166 (538)
293 4f92_B U5 small nuclear ribonu 30.1 49 0.0017 28.9 3.9 13 16-28 1048-1060(1724)
294 1dc7_A NTRC, nitrogen regulati 29.9 16 0.00054 20.5 0.7 17 6-22 39-55 (124)
295 2pt7_A CAG-ALFA; ATPase, prote 29.9 34 0.0012 24.0 2.6 24 2-25 228-251 (330)
296 2gwr_A DNA-binding response re 29.8 1.1E+02 0.0038 19.5 6.5 63 4-84 39-101 (238)
297 3sqw_A ATP-dependent RNA helic 29.4 36 0.0012 25.5 2.8 15 13-27 174-188 (579)
298 2ayx_A Sensor kinase protein R 29.3 86 0.0029 20.6 4.4 19 4-22 163-181 (254)
299 2eyu_A Twitching motility prot 29.2 38 0.0013 22.9 2.7 21 3-23 87-107 (261)
300 1ns5_A Hypothetical protein YB 29.0 1.1E+02 0.0038 19.2 5.1 43 59-106 97-142 (155)
301 1wp9_A ATP-dependent RNA helic 29.0 51 0.0018 23.1 3.4 14 14-27 125-138 (494)
302 4fak_A Ribosomal RNA large sub 28.9 70 0.0024 20.4 3.7 43 59-106 106-151 (163)
303 2fz4_A DNA repair protein RAD2 28.7 61 0.0021 21.3 3.6 14 14-27 192-205 (237)
304 1wb9_A DNA mismatch repair pro 28.4 1.7E+02 0.0058 23.4 6.5 51 11-73 683-733 (800)
305 4ad8_A DNA repair protein RECN 28.3 38 0.0013 25.2 2.7 50 7-71 408-459 (517)
306 3thx_A DNA mismatch repair pro 28.2 95 0.0033 25.4 5.1 49 12-72 739-787 (934)
307 3grc_A Sensor protein, kinase; 28.2 51 0.0017 18.8 2.9 20 3-22 39-58 (140)
308 3jvv_A Twitching mobility prot 28.2 41 0.0014 24.0 2.8 22 3-24 185-206 (356)
309 3thx_B DNA mismatch repair pro 27.9 97 0.0033 25.3 5.1 51 12-74 750-800 (918)
310 4f1h_A Tyrosyl-DNA phosphodies 27.9 35 0.0012 21.3 2.2 22 3-24 23-44 (250)
311 3j16_B RLI1P; ribosome recycli 27.5 49 0.0017 25.5 3.2 18 5-22 476-493 (608)
312 3t6k_A Response regulator rece 27.5 53 0.0018 18.9 2.8 20 3-22 37-56 (136)
313 1rif_A DAR protein, DNA helica 27.2 45 0.0015 22.3 2.7 12 16-27 227-238 (282)
314 3c3m_A Response regulator rece 27.0 93 0.0032 17.7 5.7 19 4-22 37-55 (138)
315 2kj1_A BM2 protein; cytoplasmi 27.0 39 0.0013 18.7 1.9 30 77-108 6-38 (89)
316 2o8b_B DNA mismatch repair pro 26.9 81 0.0028 26.0 4.5 53 8-72 862-914 (1022)
317 3gl9_A Response regulator; bet 26.8 46 0.0016 18.7 2.4 20 3-22 35-54 (122)
318 1ewq_A DNA mismatch repair pro 26.8 85 0.0029 25.0 4.5 12 12-23 653-664 (765)
319 3n0r_A Response regulator; sig 26.1 1.5E+02 0.0051 20.0 5.3 18 4-21 195-212 (286)
320 3fho_A ATP-dependent RNA helic 25.9 37 0.0013 25.1 2.3 13 15-27 260-272 (508)
321 2lpm_A Two-component response 25.8 53 0.0018 19.5 2.6 19 3-21 42-60 (123)
322 2oca_A DAR protein, ATP-depend 25.4 89 0.003 22.7 4.2 13 15-27 226-238 (510)
323 1oxx_K GLCV, glucose, ABC tran 25.0 48 0.0017 23.6 2.7 21 4-24 148-168 (353)
324 1edz_A 5,10-methylenetetrahydr 25.0 60 0.002 23.0 3.1 29 62-92 248-277 (320)
325 1wrb_A DJVLGB; RNA helicase, D 25.0 56 0.0019 21.3 2.9 13 16-28 176-188 (253)
326 2bbs_A Cystic fibrosis transme 24.8 53 0.0018 22.7 2.8 20 5-24 168-187 (290)
327 4gp7_A Metallophosphoesterase; 24.7 34 0.0012 21.2 1.7 67 6-73 93-162 (171)
328 3heb_A Response regulator rece 24.4 1.1E+02 0.0038 17.7 4.8 11 12-22 57-67 (152)
329 1fo8_A Alpha-1,3-mannosyl-glyc 24.3 99 0.0034 22.0 4.2 45 13-71 99-143 (343)
330 2it1_A 362AA long hypothetical 24.1 52 0.0018 23.6 2.7 20 5-24 142-161 (362)
331 2zj8_A DNA helicase, putative 23.7 1.1E+02 0.0039 23.5 4.7 14 15-28 139-152 (720)
332 4gz1_A Tyrosyl-DNA phosphodies 23.7 46 0.0016 21.1 2.2 22 3-24 29-50 (256)
333 1to0_A Hypothetical UPF0247 pr 23.5 1.1E+02 0.0037 19.6 3.9 42 60-106 103-147 (167)
334 3gd7_A Fusion complex of cysti 22.8 59 0.002 23.6 2.8 20 5-24 164-183 (390)
335 2ykg_A Probable ATP-dependent 22.6 1.8E+02 0.0062 22.0 5.6 13 15-27 137-149 (696)
336 3snk_A Response regulator CHEY 22.5 13 0.00046 21.5 -0.6 11 11-21 56-66 (135)
337 4fva_A 5'-tyrosyl-DNA phosphod 22.4 50 0.0017 20.9 2.2 22 3-24 33-54 (256)
338 3kyj_B CHEY6 protein, putative 22.4 77 0.0026 18.2 2.9 20 3-22 48-68 (145)
339 4a8j_C Elongator complex prote 22.3 2E+02 0.007 20.0 5.6 27 4-30 137-165 (280)
340 2va8_A SSO2462, SKI2-type heli 21.8 1.4E+02 0.0048 22.9 4.9 13 15-27 146-158 (715)
341 2db3_A ATP-dependent RNA helic 21.8 83 0.0028 22.6 3.4 13 15-27 204-216 (434)
342 3nh6_A ATP-binding cassette SU 21.7 55 0.0019 22.8 2.4 20 5-24 199-218 (306)
343 3m6m_D Sensory/regulatory prot 20.7 77 0.0026 18.4 2.6 19 4-22 48-66 (143)
344 3c97_A Signal transduction his 20.6 87 0.003 17.9 2.9 19 4-22 44-62 (140)
345 1xhf_A DYE resistance, aerobic 20.5 91 0.0031 17.1 2.9 19 4-22 37-55 (123)
346 1mb3_A Cell division response 20.4 67 0.0023 17.7 2.3 19 4-22 35-53 (124)
347 2j48_A Two-component sensor ki 20.3 76 0.0026 17.0 2.5 19 4-22 35-53 (119)
348 3qf4_A ABC transporter, ATP-bi 20.0 2.5E+02 0.0086 21.2 5.9 20 5-24 488-507 (587)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-31 Score=197.00 Aligned_cols=106 Identities=38% Similarity=0.587 Sum_probs=97.4
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++++|..|++++||||||||+|+++++|.......+....+++++||++||++....+|+||||||+|+.||||++|||
T Consensus 229 ~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpG 308 (405)
T 4b4t_J 229 MVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPG 308 (405)
T ss_dssp HHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTT
T ss_pred HHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCC
Confidence 58999999999999999999999999988765544444677899999999999988899999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||++|+|++||.++|..||+.++++
T Consensus 309 RfD~~I~i~lPd~~~R~~Il~~~~~~ 334 (405)
T 4b4t_J 309 RIDRKIEFPPPSVAARAEILRIHSRK 334 (405)
T ss_dssp SSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred cCceEEEcCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999988764
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-30 Score=192.93 Aligned_cols=106 Identities=29% Similarity=0.434 Sum_probs=98.1
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|..|++++||||||||+|+++.+|..+.........+.+++||+++|++....+|+||+|||+|+.||||++|||
T Consensus 263 ~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpG 342 (437)
T 4b4t_I 263 LCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPG 342 (437)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTT
T ss_pred HHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCC
Confidence 57899999999999999999999999999776655555778899999999999988899999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||++|+|++||.++|..||+.++++
T Consensus 343 RfD~~I~v~lPd~~~R~~Il~~~l~~ 368 (437)
T 4b4t_I 343 RIDRKILFENPDLSTKKKILGIHTSK 368 (437)
T ss_dssp TEEEEECCCCCCHHHHHHHHHHHHTT
T ss_pred ceeEEEEcCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999988764
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.2e-30 Score=191.50 Aligned_cols=106 Identities=38% Similarity=0.574 Sum_probs=98.0
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|..|+.++||||||||+|+++.+|.......+....+++++||++||++.+..+|+||+|||+|+.||||++|||
T Consensus 262 ~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpG 341 (437)
T 4b4t_L 262 IIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPG 341 (437)
T ss_dssp HHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTT
T ss_pred HHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCC
Confidence 57899999999999999999999999999766655555778899999999999988899999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||++|+|++||.++|..||+.++++
T Consensus 342 RfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (437)
T 4b4t_L 342 RLDRKVEIPLPNEAGRLEIFKIHTAK 367 (437)
T ss_dssp SEEEEECCCCCCHHHHHHHHHHHHHT
T ss_pred ccceeeecCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999988764
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.3e-30 Score=192.39 Aligned_cols=106 Identities=34% Similarity=0.565 Sum_probs=97.1
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|..|+.++||||||||+|+++.+|..+.........+++++||++||++.+..+|+||||||+|+.||||++|||
T Consensus 262 ~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpG 341 (434)
T 4b4t_M 262 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSG 341 (434)
T ss_dssp HHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTT
T ss_pred HHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCC
Confidence 57899999999999999999999999999766544444667889999999999988899999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||++|+|++||.++|..||+.++++
T Consensus 342 RfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (434)
T 4b4t_M 342 RLDRKIEFPLPSEDSRAQILQIHSRK 367 (434)
T ss_dssp SEEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ceeEEEEeCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999988764
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-29 Score=188.40 Aligned_cols=106 Identities=39% Similarity=0.550 Sum_probs=98.0
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++++|..|+.++||||||||+|+++.+|.......+....+++++||++||++.+..+|+||||||+|+.||||++|||
T Consensus 253 ~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpG 332 (428)
T 4b4t_K 253 MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPG 332 (428)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSS
T ss_pred HHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCC
Confidence 58999999999999999999999999999776655556788999999999999988899999999999999999999999
Q ss_pred ccceEEEec-CCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIP-LPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~-~P~~~~R~~~~~~~~~~ 107 (110)
|||++|+|| +||.++|..|++.++++
T Consensus 333 Rfd~~I~~p~lPd~~~R~~Il~~~~~~ 359 (428)
T 4b4t_K 333 RLDRKIEFPSLRDRRERRLIFGTIASK 359 (428)
T ss_dssp SEEEEEECCSSCCHHHHHHHHHHHHHS
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 999999996 89999999999988764
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-29 Score=188.72 Aligned_cols=106 Identities=32% Similarity=0.558 Sum_probs=97.1
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|..|+.++||||||||+|+++.+|............+.++++|++||++....+|+||+|||+|+.||||++|||
T Consensus 290 ~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpG 369 (467)
T 4b4t_H 290 MVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPG 369 (467)
T ss_dssp HHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTT
T ss_pred HHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccc
Confidence 58899999999999999999999999999766544444667889999999999988899999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||++|+|++||.++|..||+.++++
T Consensus 370 RFD~~I~i~lPd~~~R~~Ilk~~l~~ 395 (467)
T 4b4t_H 370 RIDRKVEFSLPDLEGRANIFRIHSKS 395 (467)
T ss_dssp TCCEEECCCCCCHHHHHHHHHHHHTT
T ss_pred cccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999988764
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.95 E-value=1.7e-29 Score=199.55 Aligned_cols=106 Identities=75% Similarity=1.127 Sum_probs=82.5
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++++|+.|++++||||||||+|+++++|+.+....++...+++++||++||++....+|+||||||+|+.||||++|||
T Consensus 558 ~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpg 637 (806)
T 3cf2_A 558 NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPG 637 (806)
T ss_dssp HHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTT
T ss_pred HHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCC
Confidence 58999999999999999999999999999765544455788999999999999988899999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||+.|++++||.++|..||+.++++
T Consensus 638 Rfd~~i~v~lPd~~~R~~il~~~l~~ 663 (806)
T 3cf2_A 638 RLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp TSCCEEEC-----CHHHHTTTTTSSC
T ss_pred cceEEEEECCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999988764
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.93 E-value=3.7e-26 Score=180.58 Aligned_cols=103 Identities=36% Similarity=0.579 Sum_probs=95.2
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|+.|+.++||||||||+|+++++|+++... ...+++++|+++|+++....+|+|||+||+++.||++++|||
T Consensus 285 ~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~---~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~G 361 (806)
T 3cf2_A 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361 (806)
T ss_dssp HHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCT---THHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTT
T ss_pred HHHHHHHHHHHcCCeEEEEehhcccccccCCCCCh---HHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCc
Confidence 58899999999999999999999999998765433 678999999999999988889999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||++|++++||.++|..|++.++++
T Consensus 362 RFd~~I~i~~Pd~~~R~~IL~~~l~~ 387 (806)
T 3cf2_A 362 RFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHTCSS
T ss_pred ccceEEecCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999988754
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.87 E-value=6.1e-22 Score=141.16 Aligned_cols=106 Identities=75% Similarity=1.127 Sum_probs=93.5
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|..|...+||||||||+|.+...+............+++++++..++++....+++||+|||+++.+|++++|||
T Consensus 96 ~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~g 175 (301)
T 3cf0_A 96 NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPG 175 (301)
T ss_dssp HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTT
T ss_pred HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCC
Confidence 46789999999999999999999999887654433334567889999999999877789999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
||+..|++++|+.++|..|++.++++
T Consensus 176 Rf~~~i~i~~p~~~~r~~il~~~l~~ 201 (301)
T 3cf0_A 176 RLDQLIYIPLPDEKSRVAILKANLRK 201 (301)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred ccceEEecCCcCHHHHHHHHHHHHcc
Confidence 99999999999999999999887753
No 10
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.87 E-value=6.2e-22 Score=149.34 Aligned_cols=106 Identities=39% Similarity=0.731 Sum_probs=89.2
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|+.|+..+||||||||+|.+..++............+.+++|+..|+++....+++||++||+++.+|++++|||
T Consensus 96 ~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~g 175 (476)
T 2ce7_A 96 RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPG 175 (476)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTT
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccC
Confidence 46789999999999999999999999887543322233567889999999999877789999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||+.|++++|+.++|..|++.++++
T Consensus 176 RFd~~i~i~~Pd~~~R~~Il~~~~~~ 201 (476)
T 2ce7_A 176 RFDKKIVVDPPDMLGRKKILEIHTRN 201 (476)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred cceeEeecCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999887754
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=137.38 Aligned_cols=103 Identities=49% Similarity=0.791 Sum_probs=86.6
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|+.|+...||++|+||+|.++..+..... ....+.+++++.+|++...+..++++++||+|+.||++++|||
T Consensus 91 ~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~g 167 (274)
T 2x8a_A 91 AVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPG 167 (274)
T ss_dssp HHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTT
T ss_pred HHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcc
Confidence 4788999999999999999999999876543221 2345678899999999877789999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|||+.|++++|+.++|..|++.+++.
T Consensus 168 Rfd~~i~~~~P~~~~r~~il~~~~~~ 193 (274)
T 2x8a_A 168 RLDKTLFVGLPPPADRLAILKTITKN 193 (274)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHHTTT
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 99999999999999999999988753
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.84 E-value=5.7e-20 Score=127.69 Aligned_cols=105 Identities=39% Similarity=0.739 Sum_probs=90.7
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|+.|....|+++||||+|.+...+............+.++.++..++++....+++||++||.++.+|++++|||
T Consensus 92 ~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~ 171 (257)
T 1lv7_A 92 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPG 171 (257)
T ss_dssp HHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTT
T ss_pred HHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCC
Confidence 36789999999999999999999998876543322223455788999999999877789999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
||++.+++++|+.++|..+++.+++
T Consensus 172 rf~~~i~i~~P~~~~r~~il~~~~~ 196 (257)
T 1lv7_A 172 RFDRQVVVGLPDVRGREQILKVHMR 196 (257)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred cCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999888765
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=130.99 Aligned_cols=101 Identities=34% Similarity=0.561 Sum_probs=89.9
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC-CCCEEEEEecCCCCCCCccccCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA-KKNVFIIGATNRPDIIDPAILRP 80 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vi~ttn~~~~ld~al~r~ 80 (110)
.++.+|..|+..+|+||||||+|.+++++.... .....+++++++..++++.. ..+++||++||.|+.+|++++|
T Consensus 93 ~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r- 168 (322)
T 1xwi_A 93 LVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR- 168 (322)
T ss_dssp HHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC---TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH-
T ss_pred HHHHHHHHHHhcCCcEEEeecHHHhcccccccc---chHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh-
Confidence 468899999999999999999999998876543 23678899999999999864 5799999999999999999999
Q ss_pred CccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
||+..+++++|+.++|..+++.++++
T Consensus 169 -Rf~~~i~i~~P~~~~r~~il~~~l~~ 194 (322)
T 1xwi_A 169 -RFEKRIYIPLPEPHARAAMFKLHLGT 194 (322)
T ss_dssp -TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred -hcCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 99999999999999999999887753
No 14
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.80 E-value=2.7e-19 Score=125.56 Aligned_cols=106 Identities=43% Similarity=0.711 Sum_probs=91.9
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|..|+...|+||||||+|.++.++.+............+..++..++++....++++|+|||.++.+|++++++|
T Consensus 98 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~ 177 (285)
T 3h4m_A 98 LVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPG 177 (285)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTT
T ss_pred HHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCC
Confidence 36788999999999999999999999887655433333556788888888988877789999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
||+..++++.|+.++|..+++.+++.
T Consensus 178 Rf~~~i~~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 178 RFDRIIEVPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp SEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred cCCeEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999887653
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=123.31 Aligned_cols=105 Identities=37% Similarity=0.646 Sum_probs=79.7
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCC-CCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGD-GGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRP 80 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~ 80 (110)
+++.+|..|....|+||||||+|.++.++...... .+......+..++..+++.....++++|+|||.++.+|++++||
T Consensus 86 ~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~ 165 (262)
T 2qz4_A 86 RVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRP 165 (262)
T ss_dssp HHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGST
T ss_pred HHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcC
Confidence 36788999999999999999999998877543211 12245567889999999887778999999999999999999999
Q ss_pred CccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
|||+..+++++|+.++|..+++.+++
T Consensus 166 ~R~~~~i~i~~p~~~~r~~il~~~~~ 191 (262)
T 2qz4_A 166 GRLDRHVFIDLPTLQERREIFEQHLK 191 (262)
T ss_dssp TSCCEEEECCSCCHHHHHHHHHHHHH
T ss_pred CcCCeEEEeCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999887765
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.79 E-value=3.5e-19 Score=127.83 Aligned_cols=101 Identities=33% Similarity=0.547 Sum_probs=86.5
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC-CCCCEEEEEecCCCCCCCccccCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-AKKNVFIIGATNRPDIIDPAILRP 80 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~ttn~~~~ld~al~r~ 80 (110)
+++.+|..|+..+|+||||||+|.+..++..... ....++.++++..++++. ...+++||+|||.++.+|++++|
T Consensus 98 ~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~- 173 (322)
T 3eie_A 98 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGES---EASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR- 173 (322)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH-
T ss_pred HHHHHHHHHHhcCCeEEEechhhhhhccCCCCcc---hHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc-
Confidence 4678999999999999999999999988754432 267889999999999985 45689999999999999999999
Q ss_pred CccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
||+..+++++|+.++|..+++.++++
T Consensus 174 -Rf~~~i~~~~p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 174 -RFERRIYIPLPDLAARTTMFEINVGD 199 (322)
T ss_dssp -HCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred -ccCeEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999987754
No 17
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.79 E-value=1.4e-19 Score=137.23 Aligned_cols=105 Identities=39% Similarity=0.705 Sum_probs=89.7
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|+.|+...|||+||||+|.+...+............+.+++++..|++...+..++++++||+|+.+|++++|||
T Consensus 111 ~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~g 190 (499)
T 2dhr_A 111 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPG 190 (499)
T ss_dssp HHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTT
T ss_pred HHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCccccccc
Confidence 46788999988899999999999998776532222222456788999999999877778999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
|||+.|++++|+.++|..|++.+.+
T Consensus 191 Rfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 191 RFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp SSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred ccceEEecCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999987765
No 18
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.79 E-value=1.1e-21 Score=155.34 Aligned_cols=106 Identities=75% Similarity=1.127 Sum_probs=88.7
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|+.|+...||||||||+|.++.++.+..........+++++|+..|+++....+++||+|||+++.||+|++|||
T Consensus 558 ~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpg 637 (806)
T 1ypw_A 558 NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPG 637 (806)
T ss_dssp HHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGG
T ss_pred HHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCcc
Confidence 46889999999999999999999999888654333233567899999999999988889999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
||+..|++++|+.++|..|++.++++
T Consensus 638 Rf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 638 RLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp GTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred ccCceeecCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999887653
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.79 E-value=5e-19 Score=133.87 Aligned_cols=103 Identities=36% Similarity=0.568 Sum_probs=91.9
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|..|...+|++|||||+|.+.+++..... ....++.+.|+..|++.....+++||+|||+++.+|++++++|
T Consensus 285 ~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~---~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~g 361 (489)
T 3hu3_A 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361 (489)
T ss_dssp HHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCC---HHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTT
T ss_pred HHHHHHHHHHhcCCcEEEecchhhhccccccccc---hHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCC
Confidence 3678999999999999999999999988754432 2567889999999999877889999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
||+..|++++|+.++|..+++.+.+.
T Consensus 362 Rf~~~i~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 362 RFDREVDIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred cCceEEEeCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999987653
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.78 E-value=1.2e-18 Score=120.90 Aligned_cols=105 Identities=39% Similarity=0.705 Sum_probs=85.1
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
++..+|+.+....|+++++||+|.+...+............+.+++++..+++...+..++++++||.|+.+|++++|+|
T Consensus 96 ~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~ 175 (254)
T 1ixz_A 96 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPG 175 (254)
T ss_dssp HHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTT
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCC
Confidence 36778999988899999999999998766432211222456788899999998866778999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
||+..|++++|+.++|..+++.+.+
T Consensus 176 rf~~~i~i~~p~~~~r~~il~~~~~ 200 (254)
T 1ixz_A 176 RFDRQIAIDAPDVKGREQILRIHAR 200 (254)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHHHT
T ss_pred cCCeEEeeCCcCHHHHHHHHHHHHc
Confidence 9999999999999999999887664
No 21
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.78 E-value=3.2e-19 Score=126.92 Aligned_cols=102 Identities=22% Similarity=0.255 Sum_probs=73.1
Q ss_pred cHHHHHHHH----HhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC-----------CCCCEEEEEe
Q psy13774 2 RIATGASMA----RAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-----------AKKNVFIIGA 66 (110)
Q Consensus 2 ~l~~~F~~A----~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~t 66 (110)
+++.+|..| +..+||||||||+|++++.+.+... .......+.+.|++.+|+.. ...+++||+|
T Consensus 83 ~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~t 161 (293)
T 3t15_A 83 LIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVT 161 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCCCEEEECCC---------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCcc-ccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEe
Confidence 367788888 6789999999999999885543221 12245567789999988543 4468999999
Q ss_pred cCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 67 TNRPDIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 67 tn~~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
||+++.+|++++||||||..|+ +|+.++|..|++.++.
T Consensus 162 tN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 162 GNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFR 199 (293)
T ss_dssp CSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHG
T ss_pred cCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhcc
Confidence 9999999999999999999997 5799999999887664
No 22
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.77 E-value=1.1e-18 Score=126.99 Aligned_cols=101 Identities=33% Similarity=0.547 Sum_probs=84.6
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC-CCCEEEEEecCCCCCCCccccCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA-KKNVFIIGATNRPDIIDPAILRP 80 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vi~ttn~~~~ld~al~r~ 80 (110)
.++.+|..|+..+|+||||||+|.+...+.... .....++.++|+..++++.. ..+++||++||.++.+|++++|
T Consensus 131 ~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r- 206 (355)
T 2qp9_X 131 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGE---SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR- 206 (355)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH-
T ss_pred HHHHHHHHHHHcCCeEEEEechHhhcccCCCCc---chHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc-
Confidence 367899999999999999999999998875442 23678889999999998864 4689999999999999999999
Q ss_pred CccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
||+..+++++|+.++|..|++.++++
T Consensus 207 -Rf~~~i~i~~P~~~~r~~il~~~l~~ 232 (355)
T 2qp9_X 207 -RFERRIYIPLPDLAARTTMFEINVGD 232 (355)
T ss_dssp -TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred -ccCEEEEeCCcCHHHHHHHHHHHHhh
Confidence 99999999999999999999887754
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.77 E-value=1.6e-18 Score=129.43 Aligned_cols=101 Identities=33% Similarity=0.561 Sum_probs=89.6
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC-CCCEEEEEecCCCCCCCccccCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA-KKNVFIIGATNRPDIIDPAILRP 80 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vi~ttn~~~~ld~al~r~ 80 (110)
.++.+|..|+..+|+||||||+|.+++++.... .....++.++|+..++++.. ..+++||+|||.|+.+|++++|
T Consensus 215 ~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r- 290 (444)
T 2zan_A 215 LVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR- 290 (444)
T ss_dssp THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC---CGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT-
T ss_pred HHHHHHHHHHHcCCeEEEEechHhhccCCCCcc---ccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh-
Confidence 478899999999999999999999998876543 23678899999999999864 5789999999999999999999
Q ss_pred CccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
||+..+++++|+.++|..|++.+++.
T Consensus 291 -Rf~~~i~i~~P~~~~r~~il~~~l~~ 316 (444)
T 2zan_A 291 -RFEKRIYIPLPEAHARAAMFRLHLGS 316 (444)
T ss_dssp -TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred -hcceEEEeCCcCHHHHHHHHHHHHhc
Confidence 99999999999999999999887753
No 24
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.75 E-value=7.4e-18 Score=118.50 Aligned_cols=105 Identities=39% Similarity=0.705 Sum_probs=85.3
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
++..+|+.+....|+++++||+|.+...+..............++.++..+++...+..++++++||.|+.+|++++|+|
T Consensus 120 ~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~ 199 (278)
T 1iy2_A 120 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPG 199 (278)
T ss_dssp HHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTT
T ss_pred HHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCC
Confidence 36778999988899999999999998766432111122456778889999998766678999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
||+..|++++|+.++|..+++.+.+
T Consensus 200 rf~~~i~i~~p~~~~r~~il~~~~~ 224 (278)
T 1iy2_A 200 RFDRQIAIDAPDVKGREQILRIHAR 224 (278)
T ss_dssp SSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHc
Confidence 9999999999999999999987764
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.71 E-value=1.4e-18 Score=121.02 Aligned_cols=104 Identities=38% Similarity=0.640 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCC-CCCCCchHHHHHHHHHhhhcCCCC-CCEEEEEecCCCCCCCccccCC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSV-GDGGGAADRVINQILTEMDGMGAK-KNVFIIGATNRPDIIDPAILRP 80 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~-~~~~~~~~~~~~~ll~~ld~~~~~-~~v~vi~ttn~~~~ld~al~r~ 80 (110)
++.+|+.|...+|+||||||+|.+..++.... ...+....+.++.++..+++.... .++++|+|||.++.+|++++|+
T Consensus 92 ~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~ 171 (268)
T 2r62_A 92 VRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRP 171 (268)
T ss_dssp SSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSS
T ss_pred HHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCC
Confidence 46789999999999999999999988763321 111112334566788888877543 4699999999999999999999
Q ss_pred CccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
|||+..+++++|+.++|..+++.+++
T Consensus 172 ~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 172 GRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp SSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 99999999999999999999988765
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=117.49 Aligned_cols=101 Identities=33% Similarity=0.530 Sum_probs=81.7
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC--CCCEEEEEecCCCCCCCccccC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA--KKNVFIIGATNRPDIIDPAILR 79 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~v~vi~ttn~~~~ld~al~r 79 (110)
.++.+|..|+...|+||||||+|.++..+..... ....++.+.|+..+++... ..+++||++||.++.+|+++++
T Consensus 195 ~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~ 271 (389)
T 3vfd_A 195 LVRALFAVARELQPSIIFIDQVDSLLCERREGEH---DASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR 271 (389)
T ss_dssp HHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhcccCCCccc---hHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc
Confidence 3678999999999999999999999887754332 2578888999999998765 4689999999999999999999
Q ss_pred CCccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 80 PGRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 80 ~grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
||+..|++++|+.++|..+++.++.+
T Consensus 272 --R~~~~i~i~~p~~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 272 --RFIKRVYVSLPNEETRLLLLKNLLCK 297 (389)
T ss_dssp --TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred --CcceEEEcCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999998877643
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.68 E-value=1.3e-16 Score=112.51 Aligned_cols=101 Identities=33% Similarity=0.531 Sum_probs=83.0
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCC---CCEEEEEecCCCCCCCcccc
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAK---KNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~---~~v~vi~ttn~~~~ld~al~ 78 (110)
.++.+|..|...+|+||||||+|.++..+..... ....+..+.++..+++.... .++++|++||.++.+|++++
T Consensus 101 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 101 LVRALFAVARHMQPSIIFIDEVDSLLSERSSSEH---EASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHcCCcEEEeccHHHhccccccCcc---hHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 3678899999999999999999999987754332 24577888999999987543 57999999999999999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
+ ||+..+++++|+.++|..+++.++++
T Consensus 178 ~--R~~~~i~~~~p~~~~r~~il~~~~~~ 204 (297)
T 3b9p_A 178 R--RFTKRVYVSLPDEQTRELLLNRLLQK 204 (297)
T ss_dssp H--HCCEEEECCCCCHHHHHHHHHHHHGG
T ss_pred h--hCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 9 99999999999999999998877653
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=114.73 Aligned_cols=100 Identities=33% Similarity=0.547 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC--CCCEEEEEecCCCCCCCccccCC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA--KKNVFIIGATNRPDIIDPAILRP 80 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~v~vi~ttn~~~~ld~al~r~ 80 (110)
++.+|..|+..+|+||||||+|.++.++.... .....++.++++..+++... ..+++||++||.++.+|+++++
T Consensus 165 ~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~- 240 (357)
T 3d8b_A 165 VRALFAVARCQQPAVIFIDEIDSLLSQRGDGE---HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR- 240 (357)
T ss_dssp HHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT-
T ss_pred HHHHHHHHHhcCCeEEEEeCchhhhccCCCCc---chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh-
Confidence 57889999999999999999999998775432 22567888999999998753 4689999999999999999999
Q ss_pred CccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
||+..+++++|+.++|..+++.++++
T Consensus 241 -Rf~~~i~i~~p~~~~r~~il~~~~~~ 266 (357)
T 3d8b_A 241 -RLVKRLYIPLPEASARKQIVINLMSK 266 (357)
T ss_dssp -TCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred -hCceEEEeCCcCHHHHHHHHHHHHhh
Confidence 99999999999999999998877653
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.64 E-value=1.4e-15 Score=120.67 Aligned_cols=102 Identities=36% Similarity=0.572 Sum_probs=90.8
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPG 81 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~g 81 (110)
+++.+|+.|....|+++|+||+|.++.++..... ....++...++..+++.....++++|++||+++.+|+++.++|
T Consensus 285 ~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~g 361 (806)
T 1ypw_A 285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361 (806)
T ss_dssp HHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCS---HHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTT
T ss_pred HHHHHHHHHHhcCCcEEEeccHHHhhhccccccc---hHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhccc
Confidence 4678999999999999999999999988754332 2567788999999999887889999999999999999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
||+..++++.|+.++|..+++.+.+
T Consensus 362 Rf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 362 RFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp SSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred ccccccccCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999987664
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.40 E-value=8.7e-15 Score=109.46 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=63.4
Q ss_pred HHHHHHHH---HhcCCeEEEEcccccccccCCCCCCCC-CCch---------------HHHHHHHHHhhh--cCCCCCCE
Q psy13774 3 IATGASMA---RAAAPCVLFFDELDSIAKSRGGSVGDG-GGAA---------------DRVINQILTEMD--GMGAKKNV 61 (110)
Q Consensus 3 l~~~F~~A---~~~~P~ii~iDeiD~l~~~r~~~~~~~-~~~~---------------~~~~~~ll~~ld--~~~~~~~v 61 (110)
++++|..| +..+||||||||+|++++++....... .... .++.+.++..++ ++...+.+
T Consensus 112 ~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 191 (456)
T 2c9o_A 112 LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVI 191 (456)
T ss_dssp HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEE
T ss_pred HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEE
Confidence 57889999 888999999999999999886542111 0001 122334666665 33344557
Q ss_pred EEEEecCCCCCCCccccCCCccce--EEEecCCCH
Q psy13774 62 FIIGATNRPDIIDPAILRPGRLDQ--LIYIPLPDE 94 (110)
Q Consensus 62 ~vi~ttn~~~~ld~al~r~grfd~--~i~~~~P~~ 94 (110)
+|++|||+++.+|+++.||||||. .++++.|+.
T Consensus 192 ~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 192 YIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp EEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred EEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 777999999999999999999999 677788854
No 31
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.23 E-value=5.9e-13 Score=99.70 Aligned_cols=88 Identities=10% Similarity=0.014 Sum_probs=15.8
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEe-cCCCCCCCccccCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGA-TNRPDIIDPAILRP 80 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t-tn~~~~ld~al~r~ 80 (110)
.++.+|..|....| +||+|.+.... ......+++++|+.+||++.+...+ +++ ||+++.+|+|++||
T Consensus 99 ~lr~lf~~a~~~~~----~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rg 166 (444)
T 1g41_A 99 IIRDLTDSAMKLVR----QQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREG 166 (444)
T ss_dssp HHHHHHHHHHHHHH----HHHHHSCC------------------------------------------------------
T ss_pred HHHHHHHHHHhcch----hhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcC
Confidence 35778888877654 78888764322 1225678999999999999766555 454 99999999999999
Q ss_pred CccceEEEecCCCHH-HHHHHH
Q psy13774 81 GRLDQLIYIPLPDEI-WLILSD 101 (110)
Q Consensus 81 grfd~~i~~~~P~~~-~R~~~~ 101 (110)
||||+.|++++|+.. .|..++
T Consensus 167 gr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 167 QLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ----------------------
T ss_pred CCcceEEEEcCCCCccchhhhh
Confidence 999999999999987 666654
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.19 E-value=2.4e-11 Score=85.72 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC-----CCCccc
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD-----IIDPAI 77 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~-----~ld~al 77 (110)
+...|..+ .++||||||+|.++..+.+. .......+.|+..++. ...++++|++||.++ .++|++
T Consensus 122 ~~~~~~~~---~~~vl~iDEid~l~~~~~~~-----~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~~l 191 (309)
T 3syl_A 122 TKEVLKRA---MGGVLFIDEAYYLYRPDNER-----DYGQEAIEILLQVMEN--NRDDLVVILAGYADRMENFFQSNPGF 191 (309)
T ss_dssp HHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHH--CTTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred HHHHHHhc---CCCEEEEEChhhhccCCCcc-----cccHHHHHHHHHHHhc--CCCCEEEEEeCChHHHHHHHhhCHHH
Confidence 34556655 57899999999998655431 1356788889998887 356788899998654 367999
Q ss_pred cCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 78 LRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 78 ~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
++ ||+..|+|++|+.+++..+++.+++
T Consensus 192 ~~--R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 192 RS--RIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HH--HEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HH--hCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 99 9999999999999999998887765
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.11 E-value=6.1e-11 Score=82.68 Aligned_cols=86 Identities=15% Similarity=0.233 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC-CCCEEEEEecCCCCCCCc-cccCC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA-KKNVFIIGATNRPDIIDP-AILRP 80 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vi~ttn~~~~ld~-al~r~ 80 (110)
++.+|..|....|++|||||+|.++..+..... ....++..|...+++... ..++++|+|||.++.+|+ .+.+
T Consensus 113 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~----~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~- 187 (272)
T 1d2n_A 113 MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPR----FSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN- 187 (272)
T ss_dssp HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTB----CCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT-
T ss_pred HHHHHHHHHhcCCcEEEEEChhhhhccCCCChh----HHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc-
Confidence 567888888888999999999999876543221 345677777777776643 357889999999999998 5665
Q ss_pred CccceEEEecCCCH
Q psy13774 81 GRLDQLIYIPLPDE 94 (110)
Q Consensus 81 grfd~~i~~~~P~~ 94 (110)
||+..|++|+++.
T Consensus 188 -rf~~~i~~p~l~~ 200 (272)
T 1d2n_A 188 -AFSTTIHVPNIAT 200 (272)
T ss_dssp -TSSEEEECCCEEE
T ss_pred -ccceEEcCCCccH
Confidence 9999988866654
No 34
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.11 E-value=4.3e-11 Score=91.38 Aligned_cols=89 Identities=24% Similarity=0.269 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC-------------CCCEEEEEecCC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA-------------KKNVFIIGATNR 69 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~-------------~~~v~vi~ttn~ 69 (110)
+...|..|....| |+||||+|.+...+.+. ..+.|+..++.... ..++++|+|||.
T Consensus 165 ~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~----------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~ 233 (543)
T 3m6a_A 165 IIQGMKKAGKLNP-VFLLDEIDKMSSDFRGD----------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANN 233 (543)
T ss_dssp HHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSS
T ss_pred HHHHHHHhhccCC-EEEEhhhhhhhhhhccC----------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCc
Confidence 4556777766776 99999999997654221 23346666653211 157899999999
Q ss_pred CCCCCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 70 PDIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 70 ~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
++.+||++++ ||+ .|+++.|+.++|..+++.++
T Consensus 234 ~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 234 LATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp TTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred cccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 9999999999 995 79999999999998877654
No 35
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.00 E-value=2.3e-10 Score=74.32 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=58.1
Q ss_pred HHHHHHHH-HhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC-----CCCcc
Q psy13774 3 IATGASMA-RAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD-----IIDPA 76 (110)
Q Consensus 3 l~~~F~~A-~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~-----~ld~a 76 (110)
+..+|..+ +...|+||+|||+|.+...+...... .....+..++ + ..++.+|++||.++ .+|++
T Consensus 103 ~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~l~~~~---~----~~~~~~i~~~~~~~~~~~~~~~~~ 172 (195)
T 1jbk_A 103 LKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPAL---A----RGELHCVGATTLDEYRQYIEKDAA 172 (195)
T ss_dssp HHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHH---H----TTSCCEEEEECHHHHHHHTTTCHH
T ss_pred HHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH---HHHHHHHHhh---c----cCCeEEEEeCCHHHHHHHHhcCHH
Confidence 44555544 34568999999999998665322111 2233333332 2 35678899999887 89999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHH
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSD 101 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~ 101 (110)
+.+ ||+ .|++++|+.++|..++
T Consensus 173 l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 173 LER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHT--TEE-EEECCCCCHHHHHTTC
T ss_pred HHH--Hhc-eeecCCCCHHHHHHHh
Confidence 999 998 6999999999998764
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.98 E-value=4.6e-10 Score=78.75 Aligned_cols=86 Identities=20% Similarity=0.250 Sum_probs=64.2
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC--------CCCCEEEEEe----cCCCCCCCccccCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG--------AKKNVFIIGA----TNRPDIIDPAILRP 80 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi~t----tn~~~~ld~al~r~ 80 (110)
..++||||||+|.+.......... .....+.+.|+..+++.. ...++++|++ ++.+..+++++++
T Consensus 115 ~~~~vl~iDEi~~l~~~~~~~~~~--~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~- 191 (310)
T 1ofh_A 115 EQNGIVFIDEIDKICKKGEYSGAD--VSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG- 191 (310)
T ss_dssp HHHCEEEEECGGGGSCCSSCCSSH--HHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH-
T ss_pred cCCCEEEEEChhhcCccccccccc--hhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh-
Confidence 347899999999998765432211 122234667788787631 2347888888 5688899999998
Q ss_pred CccceEEEecCCCHHHHHHHHH
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDK 102 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~ 102 (110)
||+..|++++|+.+++..+++
T Consensus 192 -R~~~~i~~~~~~~~~~~~il~ 212 (310)
T 1ofh_A 192 -RLPIRVELTALSAADFERILT 212 (310)
T ss_dssp -TCCEEEECCCCCHHHHHHHHH
T ss_pred -hCCceEEcCCcCHHHHHHHHH
Confidence 999999999999999988877
No 37
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.95 E-value=1.9e-09 Score=84.64 Aligned_cols=93 Identities=19% Similarity=0.144 Sum_probs=69.6
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC-----CCCCcc
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP-----DIIDPA 76 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~-----~~ld~a 76 (110)
+++.+|..+....++||||||+|.+++.+.... ...... ..+..+-...++.+|++||.+ ..+|++
T Consensus 266 ~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~-----~~~~~~----~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~a 336 (758)
T 1r6b_X 266 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-----GQVDAA----NLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRA 336 (758)
T ss_dssp HHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS-----CHHHHH----HHHSSCSSSCCCEEEEEECHHHHHCCCCCTTS
T ss_pred HHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc-----chHHHH----HHHHHHHhCCCeEEEEEeCchHHhhhhhcCHH
Confidence 467888888888899999999999987654321 122222 333333345678899999975 368999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
+.+ ||+ .+.++.|+.++|..+++.+.+
T Consensus 337 L~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 337 LAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp SGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 999 998 699999999999988887654
No 38
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.89 E-value=3e-09 Score=77.06 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=66.4
Q ss_pred HHHHHHH----HhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC-------------------CCCC
Q psy13774 4 ATGASMA----RAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-------------------AKKN 60 (110)
Q Consensus 4 ~~~F~~A----~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-------------------~~~~ 60 (110)
+.+|..+ ....|+||||||+|.+...+++...........+.+.|+..|++.. ...+
T Consensus 102 ~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn 181 (363)
T 3hws_A 102 QKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSK 181 (363)
T ss_dssp HHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTS
T ss_pred HHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCC
Confidence 4455554 4456899999999999988765443322233448888999998421 1234
Q ss_pred EEEEEecCCC----------CC-----------------------------------CCccccCCCccceEEEecCCCHH
Q psy13774 61 VFIIGATNRP----------DI-----------------------------------IDPAILRPGRLDQLIYIPLPDEI 95 (110)
Q Consensus 61 v~vi~ttn~~----------~~-----------------------------------ld~al~r~grfd~~i~~~~P~~~ 95 (110)
+++|+++|.. .. +.|+++. |||..+.+.+|+.+
T Consensus 182 ~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~ 259 (363)
T 3hws_A 182 ILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEE 259 (363)
T ss_dssp SEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHH
T ss_pred ceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHH
Confidence 4555555532 11 7888888 99999999999999
Q ss_pred HHHHHHHH
Q psy13774 96 WLILSDKF 103 (110)
Q Consensus 96 ~R~~~~~~ 103 (110)
.+..|+..
T Consensus 260 ~~~~I~~~ 267 (363)
T 3hws_A 260 ALIQILKE 267 (363)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 98887764
No 39
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.85 E-value=2.9e-09 Score=84.89 Aligned_cols=92 Identities=22% Similarity=0.269 Sum_probs=59.0
Q ss_pred cHHHHHHHHHhc-CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC----CCCcc
Q psy13774 2 RIATGASMARAA-APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD----IIDPA 76 (110)
Q Consensus 2 ~l~~~F~~A~~~-~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~----~ld~a 76 (110)
+++.+|..++.. .|+||||||+|.+.+.+..... ....+.+...++ ..++.+|++||.++ .+|++
T Consensus 250 ~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~------~~~~~~L~~~l~----~~~i~~I~at~~~~~~~~~~d~a 319 (854)
T 1qvr_A 250 RLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA------VDAGNMLKPALA----RGELRLIGATTLDEYREIEKDPA 319 (854)
T ss_dssp HHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCCEEEEECHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch------HHHHHHHHHHHh----CCCeEEEEecCchHHhhhccCHH
Confidence 367788888875 7899999999999866543211 112223333333 35677899999875 58999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
+.+ ||+. |.++.|+.+++..|++.+.+
T Consensus 320 L~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 320 LER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp TCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred HHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 999 9986 99999999999998886654
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.82 E-value=1.5e-08 Score=72.18 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=60.7
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC----------------CCCEEEEEecCCCCCCCcc
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA----------------KKNVFIIGATNRPDIIDPA 76 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~----------------~~~v~vi~ttn~~~~ld~a 76 (110)
..+++|||||+|.+. ......|+..++.... ..++.+|++||....++++
T Consensus 105 ~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~ 170 (338)
T 3pfi_A 105 SEGDILFIDEIHRLS--------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNP 170 (338)
T ss_dssp CTTCEEEEETGGGCC--------------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHH
T ss_pred cCCCEEEEechhhcC--------------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHH
Confidence 468999999999883 2234445555554210 1248999999999999999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
+++ ||+..+++++|+.+++..+++...+
T Consensus 171 L~~--R~~~~i~l~~~~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 171 LRD--RFGMQFRLEFYKDSELALILQKAAL 198 (338)
T ss_dssp HHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHh--hcCEEeeCCCcCHHHHHHHHHHHHH
Confidence 999 9999999999999999988776553
No 41
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.77 E-value=2.9e-08 Score=71.20 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=64.8
Q ss_pred HHHHHHhc-CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC---CCCCccccCCC
Q psy13774 6 GASMARAA-APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP---DIIDPAILRPG 81 (110)
Q Consensus 6 ~F~~A~~~-~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~---~~ld~al~r~g 81 (110)
++..+... .|++|+|||+|.+...+ .....+..++..++......++.+|++||.+ +.+++++.+
T Consensus 121 l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~-- 189 (387)
T 2v1u_A 121 LVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS-- 189 (387)
T ss_dssp HHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--
T ss_pred HHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--
Confidence 34444333 48999999999986432 1345666677766654325688999999988 789999999
Q ss_pred ccce-EEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQ-LIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~-~i~~~~P~~~~R~~~~~~~~~ 106 (110)
||.. .+++++|+.++...+++..++
T Consensus 190 r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 190 SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 9975 899999999999988877654
No 42
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.76 E-value=2.8e-09 Score=69.16 Aligned_cols=79 Identities=23% Similarity=0.311 Sum_probs=54.3
Q ss_pred HHHHHHHHHhc-CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC-----CCCcc
Q psy13774 3 IATGASMARAA-APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD-----IIDPA 76 (110)
Q Consensus 3 l~~~F~~A~~~-~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~-----~ld~a 76 (110)
+..++..+... .|++|+|||+|.+...+...... .. +.+.+...++ ..++.+|++||.++ .+|++
T Consensus 103 ~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~--~~---~~~~l~~~~~----~~~~~ii~~~~~~~~~~~~~~~~~ 173 (187)
T 2p65_A 103 LKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA--LD---AGNILKPMLA----RGELRCIGATTVSEYRQFIEKDKA 173 (187)
T ss_dssp HHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS--CC---THHHHHHHHH----TTCSCEEEEECHHHHHHHTTTCHH
T ss_pred HHHHHHHHHhcCCceEEEEeCHHHhcccccccccc--hH---HHHHHHHHHh----cCCeeEEEecCHHHHHHHHhccHH
Confidence 45566666654 78999999999998665422111 12 2222333333 35678999999875 79999
Q ss_pred ccCCCccceEEEecCCC
Q psy13774 77 ILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~ 93 (110)
+++ ||+. |++++|+
T Consensus 174 l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 174 LER--RFQQ-ILVEQPS 187 (187)
T ss_dssp HHH--HEEE-EECCSCC
T ss_pred HHH--hcCc-ccCCCCC
Confidence 999 9985 9999986
No 43
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.75 E-value=6.9e-08 Score=68.20 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=58.9
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC----------------CCCCEEEEEecCCCCCCCcc
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG----------------AKKNVFIIGATNRPDIIDPA 76 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~v~vi~ttn~~~~ld~a 76 (110)
..+++|||||+|.+.. .....++..++... ...++.+|++||.+..++++
T Consensus 89 ~~~~~l~lDEi~~l~~--------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~ 154 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSR--------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 154 (324)
T ss_dssp CTTCEEEETTTTSCCH--------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCS
T ss_pred cCCCEEEEECCccccc--------------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHH
Confidence 4689999999998742 12233444444321 01358899999999999999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
+.+ ||+..+.+++|+.+++..+++.+.+
T Consensus 155 l~~--R~~~~i~l~~~~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 155 LLS--RFGIVEHLEYYTPEELAQGVMRDAR 182 (324)
T ss_dssp TTT--TCSCEEECCCCCHHHHHHHHHHHHH
T ss_pred HHh--cccEEEecCCCCHHHHHHHHHHHHH
Confidence 999 9999999999999998888776653
No 44
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.73 E-value=3.4e-08 Score=70.97 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=55.0
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEec-----------CCCCCCCccccCCCcc
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGAT-----------NRPDIIDPAILRPGRL 83 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tt-----------n~~~~ld~al~r~grf 83 (110)
|+||||||+|.+. ....+.|+..++.. ..+++++++. |.+..+++++++ ||
T Consensus 190 ~~vl~IDEi~~l~--------------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~ 251 (368)
T 3uk6_A 190 PGVLFIDEVHMLD--------------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RL 251 (368)
T ss_dssp BCEEEEESGGGSB--------------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TE
T ss_pred CceEEEhhccccC--------------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hc
Confidence 7899999999873 23455666666652 3356555554 357899999999 99
Q ss_pred ceEEEecCCCHHHHHHHHHHHhh
Q psy13774 84 DQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 84 d~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
.. +++++|+.+++..+++..++
T Consensus 252 ~~-i~~~~~~~~e~~~il~~~~~ 273 (368)
T 3uk6_A 252 LI-VSTTPYSEKDTKQILRIRCE 273 (368)
T ss_dssp EE-EEECCCCHHHHHHHHHHHHH
T ss_pred cE-EEecCCCHHHHHHHHHHHHH
Confidence 77 89999999999988876553
No 45
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.70 E-value=3.4e-08 Score=70.12 Aligned_cols=73 Identities=22% Similarity=0.152 Sum_probs=56.1
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
.+.||+|||+|.+.. ....+.|+..++.. ..++.+|++||.+..+++++++ ||. .+.+++|+
T Consensus 105 ~~~vliiDEi~~l~~-------------~~~~~~L~~~le~~--~~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~ 166 (324)
T 3u61_B 105 RQKVIVIDEFDRSGL-------------AESQRHLRSFMEAY--SSNCSIIITANNIDGIIKPLQS--RCR-VITFGQPT 166 (324)
T ss_dssp CEEEEEEESCCCGGG-------------HHHHHHHHHHHHHH--GGGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCC
T ss_pred CCeEEEEECCcccCc-------------HHHHHHHHHHHHhC--CCCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCC
Confidence 578999999998841 22344566666653 3467888999999999999999 995 69999999
Q ss_pred HHHHHHHHHHH
Q psy13774 94 EIWLILSDKFL 104 (110)
Q Consensus 94 ~~~R~~~~~~~ 104 (110)
.++|..+++.+
T Consensus 167 ~~e~~~il~~~ 177 (324)
T 3u61_B 167 DEDKIEMMKQM 177 (324)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99987665543
No 46
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.69 E-value=4.3e-08 Score=68.88 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=60.8
Q ss_pred HhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC--C-------CCCEEEEEecCC------------
Q psy13774 11 RAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG--A-------KKNVFIIGATNR------------ 69 (110)
Q Consensus 11 ~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--~-------~~~v~vi~ttn~------------ 69 (110)
....+++|||||+|.+. ....+.|+..++.-. . ..++++|+|||.
T Consensus 116 ~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~ 181 (311)
T 4fcw_A 116 RRRPYSVILFDAIEKAH--------------PDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKG 181 (311)
T ss_dssp HHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSC
T ss_pred HhCCCeEEEEeChhhcC--------------HHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhccc
Confidence 33445999999999872 234556666665421 1 137889999998
Q ss_pred --------------CCCCCccccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 70 --------------PDIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 70 --------------~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
...++++++. ||+..+.+++|+.+++..+++.+++
T Consensus 182 ~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 182 WPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMS 230 (311)
T ss_dssp CCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTH
T ss_pred ccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 5578999998 9999999999999999888887664
No 47
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.63 E-value=4.7e-08 Score=76.91 Aligned_cols=80 Identities=26% Similarity=0.233 Sum_probs=61.1
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC-----CCCcc
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD-----IIDPA 76 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~-----~ld~a 76 (110)
+++.+|..+....|+||||| .. ....+.|+..+ ....+.+|++||..+ .+|++
T Consensus 255 ~l~~~~~~~~~~~~~iLfiD----------~~--------~~~~~~L~~~l----~~~~v~~I~at~~~~~~~~~~~d~a 312 (758)
T 3pxi_A 255 RLKKVMDEIRQAGNIILFID----------AA--------IDASNILKPSL----ARGELQCIGATTLDEYRKYIEKDAA 312 (758)
T ss_dssp THHHHHHHHHTCCCCEEEEC----------C----------------CCCT----TSSSCEEEEECCTTTTHHHHTTCSH
T ss_pred HHHHHHHHHHhcCCEEEEEc----------Cc--------hhHHHHHHHHH----hcCCEEEEeCCChHHHHHHhhccHH
Confidence 57889999999999999999 00 01112233333 356789999999998 79999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
++| || ..|+++.|+.+++..|++.+..
T Consensus 313 l~r--Rf-~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 313 LER--RF-QPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HHH--SE-EEEECCCCCHHHHHHHHHHTTT
T ss_pred HHh--hC-cEEEeCCCCHHHHHHHHHHHHH
Confidence 999 99 5699999999999999987654
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.62 E-value=2.2e-07 Score=66.15 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=53.9
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc----CCC-------CCCEEEEEecCCCC-CCCccccCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG----MGA-------KKNVFIIGATNRPD-IIDPAILRPG 81 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~----~~~-------~~~v~vi~ttn~~~-~ld~al~r~g 81 (110)
.+++|||||+|.+.. ...+.|+..++. +.. ..++++|+|||..+ .+++++++
T Consensus 144 ~~~vl~iDEi~~l~~--------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~-- 207 (350)
T 1g8p_A 144 NRGYLYIDECNLLED--------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD-- 207 (350)
T ss_dssp TTEEEEETTGGGSCH--------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--
T ss_pred CCCEEEEeChhhCCH--------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--
Confidence 378999999998732 233445554443 111 13789999999755 89999999
Q ss_pred ccceEEEecCC-CHHHHHHHHHH
Q psy13774 82 RLDQLIYIPLP-DEIWLILSDKF 103 (110)
Q Consensus 82 rfd~~i~~~~P-~~~~R~~~~~~ 103 (110)
||+..++++.| +.++|..|++.
T Consensus 208 R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 208 RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp TCSEEEECCCCCSHHHHHHHHHH
T ss_pred hcceEEEcCCCCcHHHHHHHHHH
Confidence 99999999999 57777676654
No 49
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.62 E-value=1.5e-07 Score=74.11 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=62.1
Q ss_pred HHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC---------CCCCEEEEEecCCCCC-----
Q psy13774 7 ASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG---------AKKNVFIIGATNRPDI----- 72 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~ttn~~~~----- 72 (110)
+...+...++||||||+|.+ ...+.+.|+..++.-. ...++++|+|||.+..
T Consensus 572 ~~~~~~~~~~vl~lDEi~~~--------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~ 637 (758)
T 3pxi_A 572 TEKVRRKPYSVVLLDAIEKA--------------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKV 637 (758)
T ss_dssp HHHHHHCSSSEEEEECGGGS--------------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHH
T ss_pred hHHHHhCCCeEEEEeCcccc--------------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHH
Confidence 34455566799999999966 2346667777776521 1246899999997665
Q ss_pred -------CCccccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 73 -------IDPAILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 73 -------ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
++|+++. |||..|.|++|+.+++..+++.+++
T Consensus 638 ~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 638 MGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp HHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 7899998 9999999999999999888777653
No 50
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.61 E-value=1.8e-07 Score=61.72 Aligned_cols=74 Identities=16% Similarity=0.064 Sum_probs=58.2
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 92 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P 92 (110)
..+++|+|||+|.+.. .....++..++. ...++.+|++||.++.+++++.+ ||. .+++++|
T Consensus 101 ~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~--~~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~ 161 (226)
T 2chg_A 101 APFKIIFLDEADALTA--------------DAQAALRRTMEM--YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPV 161 (226)
T ss_dssp CSCEEEEEETGGGSCH--------------HHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCC
T ss_pred cCceEEEEeChhhcCH--------------HHHHHHHHHHHh--cCCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCC
Confidence 5689999999998742 123455666665 24577889999999999999999 997 8999999
Q ss_pred CHHHHHHHHHHHh
Q psy13774 93 DEIWLILSDKFLY 105 (110)
Q Consensus 93 ~~~~R~~~~~~~~ 105 (110)
+.++...+++...
T Consensus 162 ~~~~~~~~l~~~~ 174 (226)
T 2chg_A 162 PKEAMKKRLLEIC 174 (226)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999887776654
No 51
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.60 E-value=1.6e-07 Score=73.80 Aligned_cols=84 Identities=23% Similarity=0.254 Sum_probs=64.4
Q ss_pred HHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC---------CCCEEEEEecCCCC------
Q psy13774 7 ASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA---------KKNVFIIGATNRPD------ 71 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~---------~~~v~vi~ttn~~~------ 71 (110)
....+...++||||||+|.+. ..+.+.|++.|+.-.- ..++++|+|||...
T Consensus 550 ~~~~~~~~~~vl~lDEi~~~~--------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~ 615 (758)
T 1r6b_X 550 TDAVIKHPHAVLLLDEIEKAH--------------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERK 615 (758)
T ss_dssp HHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----
T ss_pred HHHHHhCCCcEEEEeCccccC--------------HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhc
Confidence 344455667999999999762 3467777877774210 14688999999854
Q ss_pred -------------------CCCccccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 72 -------------------IIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 72 -------------------~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
.++|+++. |||..|.|++|+.+++..|++.+++
T Consensus 616 ~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 616 SIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp ------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 67899998 9999999999999999888777654
No 52
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.58 E-value=2.4e-07 Score=65.97 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=55.6
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC---------CCCCCEEEEEecCCCC-----CCCccccCCC
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM---------GAKKNVFIIGATNRPD-----IIDPAILRPG 81 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~---------~~~~~v~vi~ttn~~~-----~ld~al~r~g 81 (110)
+|+||||+|.+. ....+.|+..++.- ....++++++|+|..+ .+++++++
T Consensus 111 ~vl~iDEi~~~~--------------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~-- 174 (331)
T 2r44_A 111 NFILADEVNRSP--------------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD-- 174 (331)
T ss_dssp SEEEEETGGGSC--------------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--
T ss_pred cEEEEEccccCC--------------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--
Confidence 799999999762 22344555555531 1234688888888443 38999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
||+..++++.|+.++|..+++....
T Consensus 175 Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 175 RFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred heeEEEEcCCCCHHHHHHHHHhccc
Confidence 9999999999999999988876543
No 53
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.9e-07 Score=67.24 Aligned_cols=87 Identities=8% Similarity=0.005 Sum_probs=64.8
Q ss_pred HHHHHHHH--HhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC----CCcc
Q psy13774 3 IATGASMA--RAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI----IDPA 76 (110)
Q Consensus 3 l~~~F~~A--~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~----ld~a 76 (110)
+++.|... ....|+||++||+|.+. .+.++..++.+... ...++++|+.+|..+. ++++
T Consensus 119 L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~~--~~s~~~vI~i~n~~d~~~~~L~~~ 183 (318)
T 3te6_A 119 LNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWISS--KNSKLSIICVGGHNVTIREQINIM 183 (318)
T ss_dssp HHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHHC--SSCCEEEEEECCSSCCCHHHHHTC
T ss_pred HHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhcccc--cCCcEEEEEEecCcccchhhcchh
Confidence 55667764 35678999999999996 12356666665442 4578999999999875 4556
Q ss_pred ccCCCccc-eEEEecCCCHHHHHHHHHHHhh
Q psy13774 77 ILRPGRLD-QLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 77 l~r~grfd-~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
+.+ ||. ..|.|++++.++-..|++.-++
T Consensus 184 v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 184 PSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 677 887 6899999999998887776553
No 54
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.54 E-value=1.8e-07 Score=67.24 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=59.8
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHH-HHHHHHhhhcCCCCCCEEEEEecCCC---CCCCccccCCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRV-INQILTEMDGMGAKKNVFIIGATNRP---DIIDPAILRPG 81 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~-~~~ll~~ld~~~~~~~v~vi~ttn~~---~~ld~al~r~g 81 (110)
++..+.... ++|+|||+|.+..... ... +..++... .++.+|++||.+ +.+++++.+
T Consensus 126 l~~~l~~~~-~vlilDEi~~l~~~~~----------~~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s-- 186 (384)
T 2qby_B 126 IKNGTRNIR-AIIYLDEVDTLVKRRG----------GDIVLYQLLRSD------ANISVIMISNDINVRDYMEPRVLS-- 186 (384)
T ss_dssp HHHHHSSSC-EEEEEETTHHHHHSTT----------SHHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--
T ss_pred HHHHhccCC-CEEEEECHHHhccCCC----------CceeHHHHhcCC------cceEEEEEECCCchHhhhCHHHHh--
Confidence 344443444 4999999999864321 112 33343322 788999999988 789999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 82 RLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 82 rfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
||...+++++|+.++...+++..++
T Consensus 187 r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 187 SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 9988999999999999988887654
No 55
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.53 E-value=1.9e-07 Score=70.01 Aligned_cols=80 Identities=25% Similarity=0.263 Sum_probs=60.3
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC-----CCCcc
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD-----IIDPA 76 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~-----~ld~a 76 (110)
+++.+|..+....|+||||| +.. ...+.|+..+ ....+.+|++||.++ .+|++
T Consensus 255 ~~~~~~~~~~~~~~~iLfiD----------~~~--------~a~~~L~~~L----~~g~v~vI~at~~~e~~~~~~~~~a 312 (468)
T 3pxg_A 255 RLKKVMDEIRQAGNIILFID----------AAI--------DASNILKPSL----ARGELQCIGATTLDEYRKYIEKDAA 312 (468)
T ss_dssp THHHHHHHHHTCCCCEEEEC----------C----------------CCCT----TSSSCEEEEECCTTTTHHHHTTCSH
T ss_pred HHHHHHHHHHhcCCeEEEEe----------Cch--------hHHHHHHHhh----cCCCEEEEecCCHHHHHHHhhcCHH
Confidence 56789999999999999999 000 0112233223 345789999999998 79999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
+++ ||.. |.++.|+.+++..+++.+..
T Consensus 313 l~~--Rf~~-i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 313 LER--RFQP-IQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HHH--SEEE-EECCCCCHHHHHHHHHHTTT
T ss_pred HHH--hCcc-ceeCCCCHHHHHHHHHHHHH
Confidence 999 9984 99999999999999887654
No 56
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.53 E-value=5.3e-07 Score=60.02 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=58.8
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
.|.+|+|||+|.+. ....+.++..++. ...++.+|++||.+..+++++.+ |+ ..+++++|+
T Consensus 126 ~~~vlviDe~~~l~--------------~~~~~~l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~ 186 (250)
T 1njg_A 126 RFKVYLIDEVHMLS--------------RHSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALD 186 (250)
T ss_dssp SSEEEEEETGGGSC--------------HHHHHHHHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCC
T ss_pred CceEEEEECccccc--------------HHHHHHHHHHHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCC
Confidence 57999999999872 2244566777765 35678999999999999999998 76 689999999
Q ss_pred HHHHHHHHHHHhh
Q psy13774 94 EIWLILSDKFLYK 106 (110)
Q Consensus 94 ~~~R~~~~~~~~~ 106 (110)
.++...+++..++
T Consensus 187 ~~e~~~~l~~~~~ 199 (250)
T 1njg_A 187 VEQIRHQLEHILN 199 (250)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888776553
No 57
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.49 E-value=5.7e-07 Score=64.25 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=63.7
Q ss_pred HHHHHHHhcC-CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC---CCCCccccCC
Q psy13774 5 TGASMARAAA-PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP---DIIDPAILRP 80 (110)
Q Consensus 5 ~~F~~A~~~~-P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~---~~ld~al~r~ 80 (110)
.++....... |++|+|||+|.+....+ ...+..++..++.. ...++.+|++||.+ +.+++.+.+
T Consensus 118 ~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~- 185 (386)
T 2qby_A 118 RLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS- 185 (386)
T ss_dssp HHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH-
T ss_pred HHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc-
Confidence 3444444443 99999999999864431 12456666667655 45688999999987 578888888
Q ss_pred Cccc-eEEEecCCCHHHHHHHHHHHhh
Q psy13774 81 GRLD-QLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 81 grfd-~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
||. ..+++++++.++...+++..+.
T Consensus 186 -r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 186 -SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp -TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred -cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 776 5899999999999888776544
No 58
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.43 E-value=1.3e-06 Score=62.67 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=62.6
Q ss_pred HHHHHHHHHh----cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCcccc
Q psy13774 3 IATGASMARA----AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 3 l~~~F~~A~~----~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~ 78 (110)
++++.+.+.. ..+.|++|||+|.+. ....+.|++.++. ...++++|.+||.++.++|+++
T Consensus 93 ir~l~~~~~~~~~~~~~kvviIdead~l~--------------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 93 VREVTEKLNEHARLGGAKVVWVTDAALLT--------------DAAANALLKTLEE--PPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp HHHHHHHTTSCCTTSSCEEEEESCGGGBC--------------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhccccCCcEEEEECchhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHh
Confidence 3455555442 236899999999883 2245678888876 4567899999999999999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHH
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKF 103 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~ 103 (110)
+ |+ ..+.+++|+.++...+++.
T Consensus 157 S--Rc-~~~~~~~~~~~~~~~~L~~ 178 (334)
T 1a5t_A 157 S--RC-RLHYLAPPPEQYAVTWLSR 178 (334)
T ss_dssp T--TS-EEEECCCCCHHHHHHHHHH
T ss_pred h--cc-eeeeCCCCCHHHHHHHHHH
Confidence 9 88 4799999999988777654
No 59
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.41 E-value=8.4e-07 Score=64.33 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=54.5
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC-------------------CCCCEEEEEecCC----
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-------------------AKKNVFIIGATNR---- 69 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-------------------~~~~v~vi~ttn~---- 69 (110)
..++||||||+|.+...+.+.....+.....+.+.|+..|++.. ...++++|++||.
T Consensus 136 ~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~ 215 (376)
T 1um8_A 136 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLA 215 (376)
T ss_dssp HTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHH
T ss_pred cCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHH
Confidence 36899999999999877544322222223447778888888531 1245678888772
Q ss_pred -------------------------------------CCCCCccccCCCccceEEEecCCCHHHHHHHHH
Q psy13774 70 -------------------------------------PDIIDPAILRPGRLDQLIYIPLPDEIWLILSDK 102 (110)
Q Consensus 70 -------------------------------------~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~ 102 (110)
...+.|++.. ||+..+.+++++.++...++.
T Consensus 216 ~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 216 EIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp HHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHh
Confidence 1135677777 999999999999988777664
No 60
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.41 E-value=3.6e-07 Score=68.07 Aligned_cols=81 Identities=11% Similarity=0.208 Sum_probs=57.0
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC---CCccccCCCccc--eE
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI---IDPAILRPGRLD--QL 86 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~---ld~al~r~grfd--~~ 86 (110)
...|+||||||+|.+..++ .....|+..++.+...+..++++|.+.+.. +++++++ ||+ ..
T Consensus 192 ~~~~~vL~IDEi~~l~~~~------------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~ 257 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKT------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLV 257 (440)
T ss_dssp TTTCSEEEEECGGGGSSCH------------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBC
T ss_pred cCCCCEEEEeCcccccCCh------------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeE
Confidence 3378999999999885321 122334444444434455666666655554 8899999 997 78
Q ss_pred EEecCCCHHHHHHHHHHHhh
Q psy13774 87 IYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 87 i~~~~P~~~~R~~~~~~~~~ 106 (110)
+.+++|+.++|..+++...+
T Consensus 258 i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 258 AKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp CBCCCCCHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHH
Confidence 99999999999988876553
No 61
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.38 E-value=7.1e-07 Score=63.39 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=55.5
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC---CCCccccCCCccc--eEEE
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD---IIDPAILRPGRLD--QLIY 88 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~---~ld~al~r~grfd--~~i~ 88 (110)
.|++|||||+|.+..++ .....++..++........+++++++.+. .+++++.+ ||+ ..++
T Consensus 98 ~~~vL~iDEi~~l~~~~------------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~ 163 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKE------------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVE 163 (324)
T ss_dssp TCSEEEEECGGGGTTCH------------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEE
T ss_pred CCCEEEEcCcccccCCh------------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEE
Confidence 48999999999885321 11223334444333345567777877776 78999999 997 7899
Q ss_pred ecCCCHHHHHHHHHHHhh
Q psy13774 89 IPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 89 ~~~P~~~~R~~~~~~~~~ 106 (110)
+++ +.++|..+++..++
T Consensus 164 l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp CCC-CHHHHHHHHHHHHH
T ss_pred eCC-CHHHHHHHHHHHHH
Confidence 999 99999988877654
No 62
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=2e-06 Score=60.32 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=57.0
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
.+.+|+|||+|.+.. ...+.|+..++. ...++.+|++||.+..+++++.+ |+. .+.+++|+
T Consensus 107 ~~~viiiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~ 167 (323)
T 1sxj_B 107 KHKIVILDEADSMTA--------------GAQQALRRTMEL--YSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLS 167 (323)
T ss_dssp CCEEEEEESGGGSCH--------------HHHHTTHHHHHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCC
T ss_pred CceEEEEECcccCCH--------------HHHHHHHHHHhc--cCCCceEEEEeCChhhchhHHHh--hce-EEeecCCC
Confidence 489999999998742 123445666665 34577888899999999999999 875 89999999
Q ss_pred HHHHHHHHHHHh
Q psy13774 94 EIWLILSDKFLY 105 (110)
Q Consensus 94 ~~~R~~~~~~~~ 105 (110)
.++...+++...
T Consensus 168 ~~~~~~~l~~~~ 179 (323)
T 1sxj_B 168 DEDVLKRLLQII 179 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888877654
No 63
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.35 E-value=1.4e-06 Score=76.35 Aligned_cols=85 Identities=24% Similarity=0.362 Sum_probs=60.2
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC--------CCCEEEEEecCCCC-----CCCccccCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA--------KKNVFIIGATNRPD-----IIDPAILRP 80 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--------~~~v~vi~ttn~~~-----~ld~al~r~ 80 (110)
.++|+||||+|.....+.+++ ....++.+++.. .++.. -.++.+|||||.|. .|||+++|
T Consensus 1336 k~~VlFiDEinmp~~d~yg~q-----~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR- 1408 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYGSQ-----NVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR- 1408 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSSCC-----HHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT-
T ss_pred ceEEEEecccccccccccCch-----hHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh-
Confidence 357999999996443333221 234444444422 12211 13689999999994 89999999
Q ss_pred CccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 81 GRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 81 grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
|| ..++++.|+.+++..|+..+++.
T Consensus 1409 -rf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1409 -HA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp -TE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred -ee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 99 88999999999999998877653
No 64
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.34 E-value=9.9e-07 Score=65.98 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=57.3
Q ss_pred HHHHHHHHHh----cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEec--CCCCCCCcc
Q psy13774 3 IATGASMARA----AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGAT--NRPDIIDPA 76 (110)
Q Consensus 3 l~~~F~~A~~----~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tt--n~~~~ld~a 76 (110)
++.+|..|.. ..++||||||+|.+.... ...|+..++. ..+++|++| |....++++
T Consensus 91 ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~--------------q~~LL~~le~----~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IREAIERARQNRNAGRRTILFVDEVHRFNKSQ--------------QDAFLPHIED----GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEESSCGGGSSCHH
T ss_pred HHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH--------------HHHHHHHHhc----CceEEEecCCCCcccccCHH
Confidence 4556666653 468999999999884221 1235555654 446666666 444689999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 77 ILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
+++ |+. .+.+++|+.++...+++..++
T Consensus 153 L~s--R~~-v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 153 LLS--RAR-VYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp HHT--TEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HhC--cee-EEeeCCcCHHHHHHHHHHHHH
Confidence 999 986 688999999999888777664
No 65
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.33 E-value=3.3e-06 Score=60.42 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=63.6
Q ss_pred HHHHHHHHHh----cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCcccc
Q psy13774 3 IATGASMARA----AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 3 l~~~F~~A~~----~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~ 78 (110)
++.++..+.. ..+.||+|||+|.+. ....+.|+..++. ...++++|++|+.+..+++++.
T Consensus 104 ~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 104 TRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp HHHHHHHTTSCCSSSSSEEEEEECGGGSC--------------HHHHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhccccCCeEEEEEECcchhc--------------HHHHHHHHHHHhc--CCCceEEEEEeCChHhCcHHHH
Confidence 3455555442 247899999999872 2245567777776 3567899999999999999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
+ |+ ..+.+++|+.++...+++..+
T Consensus 168 s--r~-~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 168 S--RC-LQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp T--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred h--he-eEeeCCCCCHHHHHHHHHHHH
Confidence 8 87 789999999999888777655
No 66
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.29 E-value=1.6e-06 Score=60.63 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=57.9
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 92 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P 92 (110)
..+.+|+|||+|.+.. ...+.|+..++. ...++.+|++||.+..+++++.+ |+. .+.+++|
T Consensus 101 ~~~~vliiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~ 161 (319)
T 2chq_A 101 APFKIIFLDEADALTA--------------DAQAALRRTMEM--YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPV 161 (319)
T ss_dssp CCCEEEEEETGGGSCH--------------HHHHTTGGGTSS--SSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCC
T ss_pred CCceEEEEeCCCcCCH--------------HHHHHHHHHHHh--cCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCC
Confidence 3479999999998732 223445555654 24678899999999999999999 885 8999999
Q ss_pred CHHHHHHHHHHHhh
Q psy13774 93 DEIWLILSDKFLYK 106 (110)
Q Consensus 93 ~~~~R~~~~~~~~~ 106 (110)
+.++...+++...+
T Consensus 162 ~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 162 PKEAMKKRLLEICE 175 (319)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99998877766543
No 67
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=4.9e-06 Score=59.36 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=57.5
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
.|.|++|||+|.+- ....+.++..++.. ..+..+|.+||.++.+.+++++ |+ ..+.+++|+
T Consensus 134 ~~~vlilDE~~~L~--------------~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~ 194 (354)
T 1sxj_E 134 RYKCVIINEANSLT--------------KDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPS 194 (354)
T ss_dssp CCEEEEEECTTSSC--------------HHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCC
T ss_pred CCeEEEEeCccccC--------------HHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcC
Confidence 57799999999852 12344566666664 3467888999999999999999 88 789999999
Q ss_pred HHHHHHHHHHHh
Q psy13774 94 EIWLILSDKFLY 105 (110)
Q Consensus 94 ~~~R~~~~~~~~ 105 (110)
.++...+++...
T Consensus 195 ~~~~~~~l~~~~ 206 (354)
T 1sxj_E 195 DSEISTILSDVV 206 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888777654
No 68
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.23 E-value=7.7e-07 Score=59.72 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=52.8
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCE-EEEEecCCCC---CCCccccCCCccc--eE
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNV-FIIGATNRPD---IIDPAILRPGRLD--QL 86 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v-~vi~ttn~~~---~ld~al~r~grfd--~~ 86 (110)
..|.+|+|||+|.+.... .....++..++.......+ +++++++.+. .+++++.+ ||. ..
T Consensus 103 ~~~~vliiDe~~~~~~~~------------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~ 168 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHP------------LWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLT 168 (242)
T ss_dssp GGSSEEEEETGGGGTTCH------------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEE
T ss_pred cCCCEEEEeccccccCCH------------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCce
Confidence 347899999999874221 1122344444433233344 5555555554 56688998 886 89
Q ss_pred EEecCCCHHHHHHHHHHHhh
Q psy13774 87 IYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 87 i~~~~P~~~~R~~~~~~~~~ 106 (110)
+++++|+.+++..+++.+++
T Consensus 169 i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 169 YQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp EECCCCCGGGHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHH
Confidence 99999999999988877654
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.22 E-value=3.3e-06 Score=60.59 Aligned_cols=78 Identities=9% Similarity=0.019 Sum_probs=59.6
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC--CCCEEEEEecCCC---CCCCccccCCCccce-E
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA--KKNVFIIGATNRP---DIIDPAILRPGRLDQ-L 86 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~v~vi~ttn~~---~~ld~al~r~grfd~-~ 86 (110)
..|.+|+|||+|.+ ....+..|+..++.... ..++.+|++||.+ +.+++.+.+ ||.. .
T Consensus 124 ~~~~vlilDE~~~l--------------~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~ 187 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL--------------APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYV 187 (389)
T ss_dssp TCCEEEEEETGGGS--------------CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCE
T ss_pred CCeEEEEEECcccc--------------chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCce
Confidence 45899999999988 12355566666655422 2588999999988 788999888 8875 8
Q ss_pred EEecCCCHHHHHHHHHHHhh
Q psy13774 87 IYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 87 i~~~~P~~~~R~~~~~~~~~ 106 (110)
+++++++.++...+++..+.
T Consensus 188 i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 188 IRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp EECCCCBHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHH
Confidence 99999999988877766554
No 70
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=5.3e-06 Score=58.20 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=57.5
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 92 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P 92 (110)
..+.+|+|||+|.+.. ...+.|+..++.. ..++.+|++||.++.+++++.+ |+. .+.+++|
T Consensus 109 ~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l 169 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ--------------DAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPL 169 (327)
T ss_dssp CSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCC
T ss_pred CCCeEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCC
Confidence 3578999999998732 2345566666653 4567888899999999999998 886 7999999
Q ss_pred CHHHHHHHHHHHh
Q psy13774 93 DEIWLILSDKFLY 105 (110)
Q Consensus 93 ~~~~R~~~~~~~~ 105 (110)
+.++...+++...
T Consensus 170 ~~~~~~~~l~~~~ 182 (327)
T 1iqp_A 170 RDEDIAKRLRYIA 182 (327)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9888887776554
No 71
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.16 E-value=3.1e-06 Score=65.35 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=54.4
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC-----------CCCCEEEEEecCCCC-----------
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-----------AKKNVFIIGATNRPD----------- 71 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~ttn~~~----------- 71 (110)
..+|+||||+|.+.+ ...+.|+..|++-. -..++.+|+|||.+.
T Consensus 391 ~~gil~IDEid~l~~--------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ 456 (595)
T 3f9v_A 391 DGGIAVIDEIDKMRD--------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSD 456 (595)
T ss_dssp SSSEECCTTTTCCCS--------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCT
T ss_pred CCCcEEeehhhhCCH--------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchh
Confidence 358999999997721 13344555555311 134788999999987
Q ss_pred --CCCccccCCCccc-eEEEecCCCHHHHHHHHHHHhh
Q psy13774 72 --IIDPAILRPGRLD-QLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 72 --~ld~al~r~grfd-~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
.+++++++ ||| ..+..+.|+.+ ...+.+..++
T Consensus 457 ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 457 NINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILD 491 (595)
T ss_dssp TTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHT
T ss_pred ccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHH
Confidence 89999999 998 46666788888 7777776554
No 72
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=6.2e-06 Score=58.57 Aligned_cols=73 Identities=14% Similarity=0.050 Sum_probs=55.7
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~ 93 (110)
.+.||+|||+|.+.. ...+.|+..++.. ..+..+|.+||.+..+++++++ |+. .+.+++|+
T Consensus 133 ~~~vliiDE~~~l~~--------------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~ 193 (353)
T 1sxj_D 133 PYKIIILDEADSMTA--------------DAQSALRRTMETY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALD 193 (353)
T ss_dssp SCEEEEETTGGGSCH--------------HHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCC
T ss_pred CceEEEEECCCccCH--------------HHHHHHHHHHHhc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCC
Confidence 456999999998842 1235566667664 3456677788999999999999 986 79999999
Q ss_pred HHHHHHHHHHHh
Q psy13774 94 EIWLILSDKFLY 105 (110)
Q Consensus 94 ~~~R~~~~~~~~ 105 (110)
.++...+++...
T Consensus 194 ~~~~~~~l~~~~ 205 (353)
T 1sxj_D 194 ASNAIDRLRFIS 205 (353)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988877766544
No 73
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=8e-06 Score=58.23 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcC----CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCcccc
Q psy13774 3 IATGASMARAAA----PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAIL 78 (110)
Q Consensus 3 l~~~F~~A~~~~----P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~ 78 (110)
++++.+.|.... ..|++|||+|.+. ....+.|+..++. ....+++|.+|+.+..+.|+++
T Consensus 67 ir~li~~~~~~p~~~~~kvviIdead~lt--------------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~ 130 (305)
T 2gno_A 67 IRTIKDFLNYSPELYTRKYVIVHDCERMT--------------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIK 130 (305)
T ss_dssp HHHHHHHHTSCCSSSSSEEEEETTGGGBC--------------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhccccCCceEEEeccHHHhC--------------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHH
Confidence 566777665322 3699999999883 2235678888886 4567888888899999999999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHHH
Q psy13774 79 RPGRLDQLIYIPLPDEIWLILSDKFL 104 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R~~~~~~~ 104 (110)
+ | .+.+++|+.++-..+++..
T Consensus 131 S--R---~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 131 S--R---VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp T--T---SEEEECCCCHHHHHHHHHH
T ss_pred c--e---eEeCCCCCHHHHHHHHHHH
Confidence 9 8 8999999988877666543
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.03 E-value=1.1e-05 Score=64.37 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=61.5
Q ss_pred HHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC---------CCCCEEEEEecCC---------
Q psy13774 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG---------AKKNVFIIGATNR--------- 69 (110)
Q Consensus 8 ~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~ttn~--------- 69 (110)
...+...+++|||||+|.+ ...+.+.|+..++.-. .-.++++|+|||.
T Consensus 654 ~~~~~~~~~vl~lDEi~~l--------------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~ 719 (854)
T 1qvr_A 654 EAVRRRPYSVILFDEIEKA--------------HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGL 719 (854)
T ss_dssp HHHHHCSSEEEEESSGGGS--------------CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHH
T ss_pred HHHHhCCCeEEEEeccccc--------------CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhc
Confidence 3344555699999999966 2346777888877421 0137889999997
Q ss_pred -----------------CCCCCccccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 70 -----------------PDIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 70 -----------------~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
...+.|+++. |||..+.+.+|+.++...|++.+++
T Consensus 720 ~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 720 QKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 2356788887 9999999999999988888777654
No 75
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.99 E-value=1e-05 Score=61.34 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=49.3
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcC--------CCCCCEEEEEecCCCCC---CCccccCCCc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGM--------GAKKNVFIIGATNRPDI---IDPAILRPGR 82 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~--------~~~~~v~vi~ttn~~~~---ld~al~r~gr 82 (110)
.++|+||||++.+ .....+.|+..|+.- ......++|+|||.+.. ..+++++ |
T Consensus 109 ~~~IL~IDEI~r~--------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--R 172 (500)
T 3nbx_X 109 EAEIVFLDEIWKA--------------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--R 172 (500)
T ss_dssp GCSEEEEESGGGC--------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--T
T ss_pred cceeeeHHhHhhh--------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--H
Confidence 4789999999744 134556677766531 11122356778885322 3459999 9
Q ss_pred cceEEEecCCCH-HHHHHHHHH
Q psy13774 83 LDQLIYIPLPDE-IWLILSDKF 103 (110)
Q Consensus 83 fd~~i~~~~P~~-~~R~~~~~~ 103 (110)
|...++++.|+. ++|..+++.
T Consensus 173 F~~~i~v~~p~~~ee~~~IL~~ 194 (500)
T 3nbx_X 173 MLIRLWLDKVQDKANFRSMLTS 194 (500)
T ss_dssp CCEEEECCSCCCHHHHHHHHTC
T ss_pred HHHHHHHHHhhhhhhHHHHHhc
Confidence 999999999997 667776653
No 76
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.99 E-value=4.7e-06 Score=70.72 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=55.6
Q ss_pred cHHHHHHHHHhcCCeEEEEcccccccccCC---CCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC-CCCC
Q psy13774 2 RIATGASMARAAAPCVLFFDELDSIAKSRG---GSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP-DIID 74 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~l~~~r~---~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~-~~ld 74 (110)
.++.+|.+|++.+||+||+|++|+|++.+. .....+.+...+.+++++..++++....+|+|| +||+. +.+.
T Consensus 1148 ~l~~~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~~~~~~ 1223 (1706)
T 3cmw_A 1148 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQIRMKIG 1223 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECEEECTT
T ss_pred HHHHHHHHHHhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccccccch
Confidence 367889999999999999999999999853 222222356778999999999998777888888 66665 3443
No 77
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.96 E-value=2.4e-05 Score=58.35 Aligned_cols=72 Identities=21% Similarity=0.196 Sum_probs=54.8
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEe---------cC---CCCCCCccccCCCc
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGA---------TN---RPDIIDPAILRPGR 82 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t---------tn---~~~~ld~al~r~gr 82 (110)
|.|++|||+|.+. ....+.|+..|+.. ..++++++| |+ .+..++|++++ |
T Consensus 296 ~~VliIDEa~~l~--------------~~a~~aLlk~lEe~--~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLD--------------IECFTYLHRALESS--IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCB--------------HHHHHHHHHHTTST--TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcC--------------HHHHHHHHHHhhcc--CCCEEEEecCCccccccccccccccccCChhHHh--h
Confidence 4699999999882 34677788888864 334655565 33 27899999999 9
Q ss_pred cceEEEecCCCHHHHHHHHHHHh
Q psy13774 83 LDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 83 fd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
|.. +.+++|+.++...+++...
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~ 379 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRA 379 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHH
Confidence 977 6999999999988877543
No 78
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.92 E-value=4e-05 Score=57.41 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=59.4
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC--------CCCCEEEEEec----CCCCCCCccccCCCcc
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG--------AKKNVFIIGAT----NRPDIIDPAILRPGRL 83 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi~tt----n~~~~ld~al~r~grf 83 (110)
.|+++||+|.++.+.++... +.....+-..||..+++.. ..+++++|+|. +.|.++-|.|+. ||
T Consensus 252 ~il~~DEidki~~~~~~~~~--D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~ 327 (444)
T 1g41_A 252 GIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RL 327 (444)
T ss_dssp CEEEEETGGGGSCCSSCSSS--HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TC
T ss_pred CeeeHHHHHHHhhccCCCCC--CchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--cc
Confidence 49999999999866442211 1122336678898888731 24678999887 345555578887 99
Q ss_pred ceEEEecCCCHHHHHHHH
Q psy13774 84 DQLIYIPLPDEIWLILSD 101 (110)
Q Consensus 84 d~~i~~~~P~~~~R~~~~ 101 (110)
+..|.++..+.++-..|+
T Consensus 328 ~i~i~l~~lt~~e~~~Il 345 (444)
T 1g41_A 328 PIRVELTALSAADFERIL 345 (444)
T ss_dssp CEEEECCCCCHHHHHHHH
T ss_pred ceeeeCCCCCHHHHHHHH
Confidence 999999999999988777
No 79
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.88 E-value=9.4e-05 Score=55.95 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=50.3
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecC
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 91 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~ 91 (110)
...++||+|||+|.+.... ...+..++..++. ...++++++++.....+++ +. |+...+.|++
T Consensus 146 ~~~~~vliIDEid~l~~~~-----------~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~ 208 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMSGGD-----------RGGVGQLAQFCRK--TSTPLILICNERNLPKMRP-FD---RVCLDIQFRR 208 (516)
T ss_dssp STTSEEEEECSGGGCCTTS-----------TTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCC
T ss_pred cCCCeEEEEECCCccchhh-----------HHHHHHHHHHHHh--cCCCEEEEEcCCCCccchh-hH---hceEEEEeCC
Confidence 3568999999999986432 1124455555554 3345666665555455543 44 4557899999
Q ss_pred CCHHHHHHHHHHHh
Q psy13774 92 PDEIWLILSDKFLY 105 (110)
Q Consensus 92 P~~~~R~~~~~~~~ 105 (110)
|+.+++..+++...
T Consensus 209 ~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 209 PDANSIKSRLMTIA 222 (516)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999887765543
No 80
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.83 E-value=4.5e-05 Score=51.28 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=52.1
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 92 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P 92 (110)
..++||+|||++.+++.+...... . .++..+..- ...+.-+|.+|+.++.||.++++ |++..++++.|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~-----~----rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKI-----P----ENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCC-----C----HHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccchh-----H----HHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 457899999999998766432211 1 245555432 34566778888889999999998 99999999887
Q ss_pred CHHH
Q psy13774 93 DEIW 96 (110)
Q Consensus 93 ~~~~ 96 (110)
....
T Consensus 154 ~~~~ 157 (199)
T 2r2a_A 154 KMGM 157 (199)
T ss_dssp SSCC
T ss_pred ccCc
Confidence 5443
No 81
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=0.0002 Score=51.05 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=54.2
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEEecCCCH
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~ 94 (110)
+.|++|||+|.+.. ...+.|+..++.. ...+.+|++||.+..+.+++++ |+. .+.+..++.
T Consensus 111 ~~viiiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~ 171 (340)
T 1sxj_C 111 FKLIILDEADAMTN--------------AAQNALRRVIERY--TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQ 171 (340)
T ss_dssp CEEEEETTGGGSCH--------------HHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCH
T ss_pred ceEEEEeCCCCCCH--------------HHHHHHHHHHhcC--CCCeEEEEEecCccccchhHHh--hce-eEeccCCCH
Confidence 68999999998732 2344566777664 3456777889999999999999 885 788988888
Q ss_pred HHHHHHHHHHh
Q psy13774 95 IWLILSDKFLY 105 (110)
Q Consensus 95 ~~R~~~~~~~~ 105 (110)
++...++....
T Consensus 172 ~~~~~~l~~~~ 182 (340)
T 1sxj_C 172 EAIERRIANVL 182 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87766655544
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.64 E-value=8.2e-05 Score=53.69 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=57.4
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCC-C--CCEEEEEecCCCC---CCC---ccccCCCcc
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA-K--KNVFIIGATNRPD---IID---PAILRPGRL 83 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~-~--~~v~vi~ttn~~~---~ld---~al~r~grf 83 (110)
..|.+|+|||+|.+...+. .....+..++..+..... . .++.+|++||.++ .++ +.+.+ +|
T Consensus 137 ~~~~llvlDe~~~l~~~~~--------~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~ 206 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPR--------IAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QI 206 (412)
T ss_dssp TCEEEEEEESTHHHHSCTT--------SCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TC
T ss_pred CCeEEEEEeCHHHHhhccC--------cchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hc
Confidence 5689999999999854321 123455556666665431 3 6889999998765 344 66666 66
Q ss_pred ceEEEecCCCHHHHHHHHHHHh
Q psy13774 84 DQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 84 d~~i~~~~P~~~~R~~~~~~~~ 105 (110)
...+.+++++.++...+++..+
T Consensus 207 ~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 207 GFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp SEEEECCCCCHHHHHHHHHHHH
T ss_pred CCeeeeCCCCHHHHHHHHHHHH
Confidence 6669999999998887776543
No 83
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.51 E-value=0.00051 Score=49.05 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=39.2
Q ss_pred CEEEEEecCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 60 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 60 ~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
++.++++|+.+..+++.+++ ||...+.+++|+.++...+++...
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHH
Confidence 46788899999999999999 999899999999999988877654
No 84
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.32 E-value=0.0002 Score=49.20 Aligned_cols=67 Identities=24% Similarity=0.215 Sum_probs=43.0
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC---------CCCCEEEEEecCCC-------CCCCccc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG---------AKKNVFIIGATNRP-------DIIDPAI 77 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~ttn~~-------~~ld~al 77 (110)
.+++|||||+|.+.. .....|+..++.-. ...++.+|+|||.+ ..+++++
T Consensus 100 ~~~~l~lDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L 165 (265)
T 2bjv_A 100 DGGTLFLDELATAPM--------------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADL 165 (265)
T ss_dssp TTSEEEEESGGGSCH--------------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHH
T ss_pred CCcEEEEechHhcCH--------------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHH
Confidence 468999999998732 23344555555310 12467899999985 2578889
Q ss_pred cCCCccceEEEecCCCHHHH
Q psy13774 78 LRPGRLDQLIYIPLPDEIWL 97 (110)
Q Consensus 78 ~r~grfd~~i~~~~P~~~~R 97 (110)
.. ||+. +.+.+|+..+|
T Consensus 166 ~~--Rl~~-~~i~lp~L~~R 182 (265)
T 2bjv_A 166 LD--ALAF-DVVQLPPLRER 182 (265)
T ss_dssp HH--HHCS-EEEECCCGGGC
T ss_pred HH--hhcC-cEEeCCChhhh
Confidence 88 9864 45555555444
No 85
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.31 E-value=0.00016 Score=51.19 Aligned_cols=66 Identities=23% Similarity=0.321 Sum_probs=41.4
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC---------CCCCEEEEEecCCC-------CCCCcccc
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG---------AKKNVFIIGATNRP-------DIIDPAIL 78 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~ttn~~-------~~ld~al~ 78 (110)
+++|||||+|.+.. .....|+..++... ...++.+|++||.. ..+++++.
T Consensus 97 ~g~L~LDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~ 162 (304)
T 1ojl_A 97 GGTLFLDEIGDISP--------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLY 162 (304)
T ss_dssp TSEEEEESCTTCCH--------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred CCEEEEeccccCCH--------------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHH
Confidence 57999999998832 23344555555421 12368899999986 23555666
Q ss_pred CCCccceEEEecCCCHHHH
Q psy13774 79 RPGRLDQLIYIPLPDEIWL 97 (110)
Q Consensus 79 r~grfd~~i~~~~P~~~~R 97 (110)
. ||+ .+.+.+|...+|
T Consensus 163 ~--Rl~-~~~i~lPpL~eR 178 (304)
T 1ojl_A 163 Y--RLN-VVAIEMPSLRQR 178 (304)
T ss_dssp H--HHS-SEEEECCCSGGG
T ss_pred h--hcC-eeEEeccCHHHh
Confidence 6 664 456666665555
No 86
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.64 E-value=0.00044 Score=53.27 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=24.5
Q ss_pred CCEEEEEecCCC--CCCCccccCCCccc---eEEEec
Q psy13774 59 KNVFIIGATNRP--DIIDPAILRPGRLD---QLIYIP 90 (110)
Q Consensus 59 ~~v~vi~ttn~~--~~ld~al~r~grfd---~~i~~~ 90 (110)
.++.+|++||.. +.+++++++ ||+ ..++++
T Consensus 251 ~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~ 285 (604)
T 3k1j_A 251 CDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMR 285 (604)
T ss_dssp CCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECC
T ss_pred eeEEEEEecCHHHHhhcCHHHHH--HhhccceEeecc
Confidence 368899999987 789999999 997 566654
No 87
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.59 E-value=0.0014 Score=47.31 Aligned_cols=69 Identities=23% Similarity=0.371 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAI 77 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al 77 (110)
..+++...+.. +|+||+++.+......... .+...+.+.+++..|.++....++.+|++|| +...|+++
T Consensus 174 ~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~--~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 174 DDIARAMLQHR--VIVIDSLKNVIGAAGGNTT--SGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp HHHHHHHHHCS--EEEEECCTTTC-------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred HHHHHHHhhCC--EEEEecccccccccccccc--cchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 34555555544 9999999999654432111 1122345566666666654455678888888 67777775
No 88
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.04 E-value=0.013 Score=36.66 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP 70 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~ 70 (110)
..|..| .+++|||||+|.+.. .....++..+.. ...++.+|++||.+
T Consensus 70 ~~~~~a---~~g~l~ldei~~l~~--------------~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 70 DFIALA---QGGTLVLSHPEHLTR--------------EQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp HHHHHH---TTSCEEEECGGGSCH--------------HHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred cHHHHc---CCcEEEEcChHHCCH--------------HHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 345544 458999999998832 122345555543 23456788898874
No 89
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.03 E-value=0.032 Score=50.44 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=53.1
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC-------CCCCEEEEEecCCC-----CCCCccccCCCc
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-------AKKNVFIIGATNRP-----DIIDPAILRPGR 82 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-------~~~~v~vi~ttn~~-----~~ld~al~r~gr 82 (110)
..|+||||++---....+++ ..-.++.+++..-.-+. .-.++.+|||+|.| ..|+++++| |
T Consensus 1375 ~~VlFiDDiNmp~~D~yGtQ-----~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~ 1447 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTDKYGTQ-----RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--H 1447 (3245)
T ss_dssp EEEEEETTTTCCCCCTTSCC-----HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--T
T ss_pred eEEEEecccCCCCccccccc-----cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--h
Confidence 36999999994322222211 22333333333211011 12468899999988 469999999 9
Q ss_pred cceEEEecCCCHHHHHHHHHHHh
Q psy13774 83 LDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 83 fd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
|.. ++++.|+.++-..|+..++
T Consensus 1448 F~v-i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1448 API-LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp CCE-EECCCCCHHHHHHHHHHHH
T ss_pred ceE-EEeCCCCHHHHHHHHHHHH
Confidence 955 9999999999887766544
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.00 E-value=0.17 Score=35.14 Aligned_cols=87 Identities=15% Similarity=0.038 Sum_probs=49.3
Q ss_pred HHHHHHHHHhc--CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC---------
Q psy13774 3 IATGASMARAA--APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD--------- 71 (110)
Q Consensus 3 l~~~F~~A~~~--~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~--------- 71 (110)
+..++....+. .|.+|+|||++.+....+ . .....+..+. +.. .++.+|.|++...
T Consensus 124 ~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~----~---~~~~~l~~~~---~~~---~~~~~i~~g~~~~~l~~~l~~~ 190 (357)
T 2fna_A 124 FANLLESFEQASKDNVIIVLDEAQELVKLRG----V---NLLPALAYAY---DNL---KRIKFIMSGSEMGLLYDYLRVE 190 (357)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETGGGGGGCTT----C---CCHHHHHHHH---HHC---TTEEEEEEESSHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCCCCeEEEEECHHHhhccCc----h---hHHHHHHHHH---HcC---CCeEEEEEcCchHHHHHHHhcc
Confidence 34455555443 399999999999864210 0 1222333332 221 3566666665432
Q ss_pred CCCccccCCCccceEEEecCCCHHHHHHHHHHH
Q psy13774 72 IIDPAILRPGRLDQLIYIPLPDEIWLILSDKFL 104 (110)
Q Consensus 72 ~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~ 104 (110)
.....+ .||+...+.+++.+.++-..++...
T Consensus 191 ~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~ 221 (357)
T 2fna_A 191 DPESPL--FGRAFSTVELKPFSREEAIEFLRRG 221 (357)
T ss_dssp CTTSTT--TTCCCEEEEECCCCHHHHHHHHHHH
T ss_pred CCCCcc--ccCccceeecCCCCHHHHHHHHHHH
Confidence 111122 2477788999999988877666543
No 91
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.99 E-value=0.0094 Score=51.83 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccC---CCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSR---GGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r---~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn 68 (110)
++.++..++..+|++|+||+++.+.+.. ............+++++++.+|.++....++++|.+-.
T Consensus 1494 l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1494 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 4567788889999999999999999753 11111111124678899999998876677777766643
No 92
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.87 E-value=0.0026 Score=46.57 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=47.2
Q ss_pred HHhcCCeEEEEcccccccc-cCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCccceEEE
Q psy13774 10 ARAAAPCVLFFDELDSIAK-SRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIY 88 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~-~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grfd~~i~ 88 (110)
....+.+++++||++.+.. .++-... ........+...+++ .+.|+++||+++.+ +++.+||+++..++
T Consensus 212 g~~~q~~~~l~dd~~~~~~~~r~l~~~----~~~~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~ 281 (377)
T 1svm_A 212 GVAIDQFLVVFEDVKGTGGESRDLPSG----QGINNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEY 281 (377)
T ss_dssp GGGTTCSCEEETTCCCSTTTTTTCCCC----SHHHHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSC
T ss_pred HHhcchhHHHHHHHHHHHHHHhhcccc----CcchHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHH
Confidence 3344567889999998875 3321111 111122445555655 24678889999999 79999999998877
Q ss_pred ecC
Q psy13774 89 IPL 91 (110)
Q Consensus 89 ~~~ 91 (110)
...
T Consensus 282 ~l~ 284 (377)
T 1svm_A 282 SVP 284 (377)
T ss_dssp CCC
T ss_pred hhc
Confidence 754
No 93
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.74 E-value=0.25 Score=34.28 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=44.8
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC---------CCCccccCCCccc
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD---------IIDPAILRPGRLD 84 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~---------~ld~al~r~grfd 84 (110)
.|.+|+|||++.+..... . ....+...+...++.. .++.+|.|++... .....+. ||+.
T Consensus 128 ~~~vlvlDe~~~~~~~~~----~---~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~ 195 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGS----R---GGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIA 195 (350)
T ss_dssp SCEEEEEETGGGGGGBTT----T---TTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCC
T ss_pred CCEEEEEeCHHHHhccCc----c---chhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCcc
Confidence 499999999999864210 0 1123333333334432 3566666654421 1111222 4777
Q ss_pred eEEEecCCCHHHHHHHHHHH
Q psy13774 85 QLIYIPLPDEIWLILSDKFL 104 (110)
Q Consensus 85 ~~i~~~~P~~~~R~~~~~~~ 104 (110)
..+++++.+.++-..++...
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~ 215 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRG 215 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHH
Confidence 78999999988766665543
No 94
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.69 E-value=0.011 Score=36.86 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=26.6
Q ss_pred CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC
Q psy13774 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP 70 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~ 70 (110)
.+++|||||+|.+... ....++..++.- ...++.+|+|||.+
T Consensus 75 ~~~~l~lDei~~l~~~--------------~q~~Ll~~l~~~-~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIAQYSRN--------------IQTGITFIIGKA-ERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECTTCCHH--------------HHHHHHHHHHHH-TTTTCEEEEEEEEC
T ss_pred CCCeEEEeChHHCCHH--------------HHHHHHHHHHhC-CCCCEEEEEecCCC
Confidence 3689999999988321 223344555442 24567788888865
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=95.54 E-value=0.017 Score=43.94 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=41.3
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc-------CCCCCCEEEEEecCCCC-----------CCCccc
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG-------MGAKKNVFIIGATNRPD-----------IIDPAI 77 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-------~~~~~~v~vi~ttn~~~-----------~ld~al 77 (110)
.++|+||++.+- ....+.|+.-|++ ..-..++.||||+|... .|++++
T Consensus 302 Gvl~lDEIn~~~--------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~al 367 (506)
T 3f8t_A 302 GILAVDHLEGAP--------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDF 367 (506)
T ss_dssp SEEEEECCTTCC--------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHH
T ss_pred CeeehHhhhhCC--------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHH
Confidence 699999999762 2344445555542 11135789999999875 889999
Q ss_pred cCCCccceEEE-ecCCCHHH
Q psy13774 78 LRPGRLDQLIY-IPLPDEIW 96 (110)
Q Consensus 78 ~r~grfd~~i~-~~~P~~~~ 96 (110)
+. |||..+. ++.|+.+.
T Consensus 368 LD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 368 LS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp HT--TCSEEEETTC------
T ss_pred hh--heeeEEEecCCCChhH
Confidence 99 9997554 46666443
No 96
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.47 E-value=0.1 Score=37.71 Aligned_cols=83 Identities=13% Similarity=0.020 Sum_probs=54.9
Q ss_pred HHHHHHh--cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc--------
Q psy13774 6 GASMARA--AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP-------- 75 (110)
Q Consensus 6 ~F~~A~~--~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~-------- 75 (110)
+|..+.. ..|.++++||+..++.... ......+..++.... +.++.++.+|..+.++..
T Consensus 252 i~~~~~~~~~~~~~i~iDEa~~~~~~~~-------~~~~~~l~~~~~~~R----k~g~~~~~~tQ~~~d~~~~~~~~~~~ 320 (392)
T 4ag6_A 252 AWNILERDRRERTVLVVDEAWMLVDPQT-------PQAIAFLRDTSKRIR----KYNGSLIVISQNVIDFLAPEVQRYGQ 320 (392)
T ss_dssp HHHHHHHSCCTTCEEEETTGGGGCCTTC-------THHHHHHHHHHHHGG----GGTCEEEEEESCGGGGGSTTTHHHHH
T ss_pred HHHHHHhCCCccEEEEEecHHHHhCcCc-------hHHHHHHHHHHHHhh----hhCeEEEEEcCCHHHhhChhhHHHHH
Confidence 4455443 4589999999999975321 134445555555554 345588899999988874
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHH
Q psy13774 76 AILRPGRLDQLIYIPLPDEIWLILSDK 102 (110)
Q Consensus 76 al~r~grfd~~i~~~~P~~~~R~~~~~ 102 (110)
+++. ..+.+|.++.++. .+..+.+
T Consensus 321 ~il~--n~~~~i~l~~~~~-~~~~~~~ 344 (392)
T 4ag6_A 321 ALLD--NPTYKLLLAQGEK-DLEAITT 344 (392)
T ss_dssp HHHH--SCSEEEECSCCHH-HHHHHHH
T ss_pred HHHH--hhhhhheeCCChh-hHHHHHH
Confidence 5666 7788999988754 4444443
No 97
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.47 E-value=0.015 Score=36.80 Aligned_cols=61 Identities=8% Similarity=0.230 Sum_probs=32.2
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCC-EEEEEecC-CCCCCC--ccccCCCccceEEE
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKN-VFIIGATN-RPDIID--PAILRPGRLDQLIY 88 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~-v~vi~ttn-~~~~ld--~al~r~grfd~~i~ 88 (110)
..|.+++|||++.+... ....+-.++..+. .... ++++ ||| .|..+. +.+.+ |+..-..
T Consensus 82 ~~~~lLilDE~~~~~~~-----------~~~~l~~li~~~~---~~g~~~iii-ts~~~p~~l~~~~~L~S--Rl~~g~~ 144 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNE-----------EQALLFSIFNRFR---NSGKGFLLL-GSEYTPQQLVIREDLRT--RMAYCLV 144 (149)
T ss_dssp GGCSEEEEESTTCCCSH-----------HHHHHHHHHHHHH---HHTCCEEEE-EESSCTTTSSCCHHHHH--HGGGSEE
T ss_pred hCCCEEEEeCccccChH-----------HHHHHHHHHHHHH---HcCCcEEEE-ECCCCHHHccccHHHHH--HHhcCee
Confidence 35889999999865211 1223333333332 2223 3444 555 555443 77777 7765444
Q ss_pred ec
Q psy13774 89 IP 90 (110)
Q Consensus 89 ~~ 90 (110)
+.
T Consensus 145 ~~ 146 (149)
T 2kjq_A 145 YE 146 (149)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 98
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.23 E-value=0.13 Score=39.65 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=53.0
Q ss_pred eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC--CCCccccCCCccceEEEecCCC
Q psy13774 16 CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD--IIDPAILRPGRLDQLIYIPLPD 93 (110)
Q Consensus 16 ~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~--~ld~al~r~grfd~~i~~~~P~ 93 (110)
-+|+|||+..++..-. + -+...+..+-.....-++.+|.+|.+|. .|+..++. -|..+|-+.+.+
T Consensus 345 ivvVIDE~~~L~~~~~----------~-~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG----------K-KVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHTC----------H-HHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhhh----------H-HHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 6999999998875321 1 1223333333333567899999999998 89988888 899999999998
Q ss_pred HHHHHHHH
Q psy13774 94 EIWLILSD 101 (110)
Q Consensus 94 ~~~R~~~~ 101 (110)
...-..++
T Consensus 412 ~~Dsr~IL 419 (574)
T 2iut_A 412 KIDSRTIL 419 (574)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77765554
No 99
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.78 E-value=0.22 Score=35.18 Aligned_cols=84 Identities=15% Similarity=0.046 Sum_probs=51.6
Q ss_pred HHHHHHHHHh----cCCeEEEEccccc-ccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC------C
Q psy13774 3 IATGASMARA----AAPCVLFFDELDS-IAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP------D 71 (110)
Q Consensus 3 l~~~F~~A~~----~~P~ii~iDeiD~-l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~------~ 71 (110)
++++.+.+.. ...-||+|||+|. +. ....+.|+..+... ...+++|.+|+.+ .
T Consensus 61 ~~~l~~~~~~~plf~~~kvvii~~~~~kl~--------------~~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~ 124 (343)
T 1jr3_D 61 WNAIFSLCQAMSLFASRQTLLLLLPENGPN--------------AAINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENA 124 (343)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECCSSCCC--------------TTHHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTS
T ss_pred HHHHHHHhcCcCCccCCeEEEEECCCCCCC--------------hHHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhh
Confidence 4455555542 2357999999986 41 11345567777653 3445555555543 3
Q ss_pred CCCccccCCCccceEEEecCCCHHHHHHHHHHHh
Q psy13774 72 IIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLY 105 (110)
Q Consensus 72 ~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~ 105 (110)
.+.+++.+ |. ..+.+.+|+..+...+++..+
T Consensus 125 k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 125 AWFTALAN--RS-VQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp HHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHH
T ss_pred HHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHH
Confidence 46677787 65 578998888777766655543
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.94 E-value=0.55 Score=42.22 Aligned_cols=84 Identities=6% Similarity=-0.024 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHH----HHhhhc-----------CCCCCCEEEEEec
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQI----LTEMDG-----------MGAKKNVFIIGAT 67 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~l----l~~ld~-----------~~~~~~v~vi~tt 67 (110)
+..+|.-|... ++++++||++.+-. ..-+.+++. ...+.. +.-..+..+++|.
T Consensus 687 lg~~~~g~~~~-Gaw~~~DE~nr~~~-----------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~ 754 (2695)
T 4akg_A 687 LSRLLVGITQI-GAWGCFDEFNRLDE-----------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITL 754 (2695)
T ss_dssp HHHHHHHHHHH-TCEEEEETTTSSCH-----------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEE
T ss_pred hhHHHHHHHhc-CCEeeehhhhhcCh-----------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEe
Confidence 34567666554 58999999996522 112222221 222211 1113456788888
Q ss_pred C----CCCCCCccccCCCccceEEEecCCCHHHHHHHH
Q psy13774 68 N----RPDIIDPAILRPGRLDQLIYIPLPDEIWLILSD 101 (110)
Q Consensus 68 n----~~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~ 101 (110)
| ....+++++++ || +.|.+..||.+...++.
T Consensus 755 NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 755 NPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEMI 789 (2695)
T ss_dssp CCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHHH
T ss_pred CCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHHH
Confidence 8 56789999999 99 78999999998876653
No 101
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=90.12 E-value=0.42 Score=36.36 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=52.3
Q ss_pred CCe-EEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC--CCCccccCCCccceEEEec
Q psy13774 14 APC-VLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD--IIDPAILRPGRLDQLIYIP 90 (110)
Q Consensus 14 ~P~-ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~--~ld~al~r~grfd~~i~~~ 90 (110)
-|- +|+|||...++... ..-+..++..+-......++.+|.+|.+|. .++..++. -|..+|-+.
T Consensus 296 lP~ivlvIDE~~~ll~~~-----------~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-----------GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-----------HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhhh-----------hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 464 89999998876421 111223334343333445889999999997 68888887 899999999
Q ss_pred CCCHHHHHHHH
Q psy13774 91 LPDEIWLILSD 101 (110)
Q Consensus 91 ~P~~~~R~~~~ 101 (110)
+.+..+...++
T Consensus 363 v~s~~dsr~il 373 (512)
T 2ius_A 363 VSSKIDSRTIL 373 (512)
T ss_dssp CSSHHHHHHHH
T ss_pred cCCHHHHHHhc
Confidence 99987766654
No 102
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=89.81 E-value=0.52 Score=34.00 Aligned_cols=66 Identities=24% Similarity=0.443 Sum_probs=35.7
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc-----CCCC----CCEEEEEecCCCCCCCccccCCCccce
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG-----MGAK----KNVFIIGATNRPDIIDPAILRPGRLDQ 85 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~~~----~~v~vi~ttn~~~~ld~al~r~grfd~ 85 (110)
...+|+|||+.+- ...-..|+..++. +.+. -++-+|++||. ++. .....|+|..
T Consensus 223 ~gtlfldei~~l~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~--~l~-~~v~~g~fr~ 285 (368)
T 3dzd_A 223 QGTLFLDEVGELD--------------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK--NLE-EEIKKGNFRE 285 (368)
T ss_dssp TSEEEEETGGGSC--------------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS--CHH-HHHHTTSSCH
T ss_pred CCeEEecChhhCC--------------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC--CHH-HHHHcCCccH
Confidence 3689999999882 1223334444432 1111 25668899984 222 3344466643
Q ss_pred -------EEEecCCCHHHH
Q psy13774 86 -------LIYIPLPDEIWL 97 (110)
Q Consensus 86 -------~i~~~~P~~~~R 97 (110)
.+.+.+|.-.+|
T Consensus 286 dL~~rl~~~~i~lPpLreR 304 (368)
T 3dzd_A 286 DLYYRLSVFQIYLPPLRER 304 (368)
T ss_dssp HHHHHHTSEEEECCCGGGS
T ss_pred HHHHHhCCeEEeCCChhhc
Confidence 344555555554
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.73 E-value=0.59 Score=29.63 Aligned_cols=46 Identities=24% Similarity=0.081 Sum_probs=25.4
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
..|.+++|||++.... +......+..++.... . .+..+|.|||.+.
T Consensus 99 ~~~~llilDE~~~~~~---------~~~~~~~l~~ll~~~~---~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERL---------SDWQRELISYIITYRY---N-NLKSTIITTNYSL 144 (180)
T ss_dssp HTCSEEEEETCSSSCC---------CHHHHHHHHHHHHHHH---H-TTCEEEEECCCCS
T ss_pred cCCCEEEEeCCCCCcC---------CHHHHHHHHHHHHHHH---H-cCCCEEEEcCCCh
Confidence 3689999999985421 1123334444443332 1 2345667777654
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.73 E-value=0.54 Score=41.32 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=48.3
Q ss_pred cHHHHHHHHHh----cCCeEEEEcccccccc-cCCCC--CCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 2 RIATGASMARA----AAPCVLFFDELDSIAK-SRGGS--VGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 2 ~l~~~F~~A~~----~~P~ii~iDeiD~l~~-~r~~~--~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
.+..+++.+++ ..|++|+||.+..+.. ..... ......-..+.+++++..|..+....++.||++..-....+
T Consensus 794 ~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e 873 (2050)
T 3cmu_A 794 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 873 (2050)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTT
T ss_pred CHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccch
Confidence 35666776665 7899999999999986 32111 11111233566888888888887777888888766554444
No 105
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.27 E-value=0.65 Score=30.55 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=30.6
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
+.+.+....|.+|+|||+-.+.....+...+ .....+....++..+..+....++.||.+++.....
T Consensus 111 ~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 111 ASAMMVESRYALLIVDSATALYRTDYSGRGE-LSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp HHHHHHHSCEEEEEEETSSGGGC-------C-HHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred HHHHHhcCCceEEEEeCchHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 4455566789999999999887543111100 001111244444444433333355666666644443
No 106
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=85.92 E-value=3.2 Score=27.17 Aligned_cols=73 Identities=21% Similarity=0.129 Sum_probs=41.2
Q ss_pred HHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC-----ccccCCC
Q psy13774 7 ASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID-----PAILRPG 81 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld-----~al~r~g 81 (110)
........|.++++||.-++...... .......+..++..+.. .+..+|.+|+..+... +.+..
T Consensus 128 ~~~l~~~~p~~lilDep~~~ld~~~d-----~~~~~~~l~~l~~~l~~----~g~tii~vtH~~~~~~~~~~~~~i~~-- 196 (251)
T 2ehv_A 128 YRVVKAINAKRLVIDSIPSIALRLEE-----ERKIREVLLKLNTILLE----MGVTTILTTEAPDPQHGKLSRYGIEE-- 196 (251)
T ss_dssp HHHHHHTTCSEEEEECHHHHHHHSSS-----GGGHHHHHHHHHHHHHH----HCCEEEEEECCC----CCSSSSSCGG--
T ss_pred HHHHHhhCCCEEEEccHHHHHhhcCC-----HHHHHHHHHHHHHHHHH----CCCeEEEEECCCCCCcccccccChhh--
Confidence 34445688999999999887753211 11344445566665532 2456777888766652 22333
Q ss_pred cc-ceEEEec
Q psy13774 82 RL-DQLIYIP 90 (110)
Q Consensus 82 rf-d~~i~~~ 90 (110)
-+ |..+.+.
T Consensus 197 ~~aD~vi~l~ 206 (251)
T 2ehv_A 197 FIARGVIVLD 206 (251)
T ss_dssp GGCSEEEEEE
T ss_pred EeeeEEEEEe
Confidence 45 7777664
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.46 E-value=0.52 Score=30.54 Aligned_cols=16 Identities=6% Similarity=0.177 Sum_probs=13.4
Q ss_pred CCeEEEEccccccccc
Q psy13774 14 APCVLFFDELDSIAKS 29 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~~ 29 (110)
.|.+|+|||+..+...
T Consensus 105 ~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 105 NFALVVVDSITAHYRA 120 (220)
T ss_dssp TEEEEEEECCCCCTTG
T ss_pred CCCEEEEcCcHHHhhh
Confidence 4999999999988643
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=85.33 E-value=2.1 Score=27.49 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=12.3
Q ss_pred HhcCCeEEEEcccc
Q psy13774 11 RAAAPCVLFFDELD 24 (110)
Q Consensus 11 ~~~~P~ii~iDeiD 24 (110)
-...|.++++||++
T Consensus 96 l~~~p~llilDEig 109 (178)
T 1ye8_A 96 KKDRRKVIIIDEIG 109 (178)
T ss_dssp HHCTTCEEEECCCS
T ss_pred cccCCCEEEEeCCC
Confidence 57889999999976
No 109
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=84.94 E-value=0.66 Score=26.57 Aligned_cols=20 Identities=15% Similarity=-0.034 Sum_probs=17.1
Q ss_pred EecCCCHHHHHHHHHHHhhc
Q psy13774 88 YIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 88 ~~~~P~~~~R~~~~~~~~~~ 107 (110)
+-.+||.++|..||+.++++
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~ 26 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRK 26 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTT
T ss_pred CCCCcCHHHHHHHHHHHHcC
Confidence 34789999999999998864
No 110
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.83 E-value=2.5 Score=30.67 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=51.5
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC--------ccccCCCccc
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID--------PAILRPGRLD 84 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld--------~al~r~grfd 84 (110)
..|+++++||+..+..-. .+..++... ...++.++..|..+..+. .+++. -++
T Consensus 278 ~~~~~~~lDE~~~l~~~~-------------~l~~~~~~~----R~~g~~~~~~~Qs~~ql~~~yG~~~a~~i~~--n~~ 338 (437)
T 1e9r_A 278 KRRLWLFIDELASLEKLA-------------SLADALTKG----RKAGLRVVAGLQSTSQLDDVYGVKEAQTLRA--SFR 338 (437)
T ss_dssp TCCEEEEESCGGGSCBCS-------------SHHHHHHHC----TTTTEEEEEEESCHHHHHHHHCHHHHHHHHT--TCC
T ss_pred CccEEEEEEcccccccch-------------hHHHHHHHH----hccCCEEEEEecCHHHHHHHHCHHHHHHHHh--ccC
Confidence 357999999999886421 122233322 456889999999998886 46776 888
Q ss_pred eEEEecCC--CHHHHHHHHHH
Q psy13774 85 QLIYIPLP--DEIWLILSDKF 103 (110)
Q Consensus 85 ~~i~~~~P--~~~~R~~~~~~ 103 (110)
..|.++.. +.+..+.+-+.
T Consensus 339 ~~i~~~~~~~d~~ta~~~s~~ 359 (437)
T 1e9r_A 339 SLVVLGGSRTDPKTNEDMSLS 359 (437)
T ss_dssp EEEEEECCTTCHHHHHHHHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHH
Confidence 99999998 88877766543
No 111
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.26 E-value=1.9 Score=31.20 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHhcCCeEEEEcccccccccCCCCC--CCC-CCchHHHHHHHHHhhhcCCCCCCEEEEEecCC
Q psy13774 10 ARAAAPCVLFFDELDSIAKSRGGSV--GDG-GGAADRVINQILTEMDGMGAKKNVFIIGATNR 69 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~~r~~~~--~~~-~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~ 69 (110)
.+...+.+|+||.+..+.+...-.. .+. .....+.+++++..+..+....++.||++...
T Consensus 148 ~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~ 210 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210 (366)
T ss_dssp HTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred HhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 3456799999999999985321111 010 01223556677777765545556666665443
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.47 E-value=6.7 Score=36.24 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=33.2
Q ss_pred CCEEEEEecC----CCCCCCccccCCCccceEEEecCCCHHHHHHHH
Q psy13774 59 KNVFIIGATN----RPDIIDPAILRPGRLDQLIYIPLPDEIWLILSD 101 (110)
Q Consensus 59 ~~v~vi~ttn----~~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~ 101 (110)
...-+++|.| ....++++++. || +.|.+..||.+.-.++.
T Consensus 706 ~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 706 QDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp TTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHHH
T ss_pred CCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHHH
Confidence 4577888888 45799999999 99 77999999998877664
No 113
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=82.34 E-value=0.59 Score=33.57 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=16.5
Q ss_pred HHHhcCCeEEEEcccccccc
Q psy13774 9 MARAAAPCVLFFDELDSIAK 28 (110)
Q Consensus 9 ~A~~~~P~ii~iDeiD~l~~ 28 (110)
.++...|.+|+||++.++..
T Consensus 134 l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHTTTCCSEEEEECGGGCCC
T ss_pred HHhcCCCCEEEEcChHhhcc
Confidence 44467799999999999984
No 114
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=80.54 E-value=3.7 Score=27.90 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
-.+..|-...|.++++||-=+=+ +......+..++..+. .. +..||.+|++.+.+.
T Consensus 162 v~iAraL~~~p~lllLDEPts~L----------D~~~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~~~ 217 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGV----------APGLAHDIFNHVLELK---AK-GITFLIIEHRLDIVL 217 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTC----------CHHHHHHHHHHHHHHH---HT-TCEEEEECSCCSTTG
T ss_pred HHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHHH
Confidence 45667778899999999944211 1123334444444442 22 446677888776553
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=80.48 E-value=1.7 Score=28.04 Aligned_cols=54 Identities=11% Similarity=0.077 Sum_probs=29.3
Q ss_pred HHHHHHhcCCe--EEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC
Q psy13774 6 GASMARAAAPC--VLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP 70 (110)
Q Consensus 6 ~F~~A~~~~P~--ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~ 70 (110)
+.+.+..+.|. +|++||...+.... ......++..+.... ...++.++.+|+..
T Consensus 113 ~~~~~~~~~~~~~llilDe~~~~~~~d-------~~~~~~~~~~l~~~~----~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 113 VIEAKQKLGYGKARLVIDSVSALFLDK-------PAMARKISYYLKRVL----NKWNFTIYATSQYA 168 (235)
T ss_dssp HHHHHHHHCSSCEEEEEETGGGGSSSC-------GGGHHHHHHHHHHHH----HHTTEEEEEEEC--
T ss_pred HHHHHHhhCCCceEEEEECchHhhcCC-------HHHHHHHHHHHHHHH----HhCCCeEEEEeccC
Confidence 44445567898 99999999875321 012233333333322 23456777777765
No 116
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=80.33 E-value=3.7 Score=28.09 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. .. +..+|.+|++++.+.
T Consensus 146 Rv~lAraL~~~p~lllLDEPts~L----------D~~~~~~l~~~l~~l~---~~-g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 146 RVAIASVIVHEPDILILDEPLVGL----------DREGKTDLLRIVEKWK---TL-GKTVILISHDIETVI 202 (266)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTC----------CHHHHHHHHHHHHHHH---HT-TCEEEEECSCCTTTG
T ss_pred HHHHHHHHHcCCCEEEEcCccccC----------CHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 345677778999999999955221 1123333334444432 22 446677788776543
No 117
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=79.88 E-value=2.6 Score=30.44 Aligned_cols=66 Identities=27% Similarity=0.469 Sum_probs=36.6
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhc-----CCC----CCCEEEEEecCCCCCCCccccCCCccce
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDG-----MGA----KKNVFIIGATNRPDIIDPAILRPGRLDQ 85 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~~----~~~v~vi~ttn~~~~ld~al~r~grfd~ 85 (110)
..++|+|||+.+- ......|+..++. +.+ ..++-+|++||.. +. .+.+.|+|..
T Consensus 232 ~gtlfldei~~l~--------------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~--l~-~~~~~g~fr~ 294 (387)
T 1ny5_A 232 GGTLFLDEIGELS--------------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN--IK-ELVKEGKFRE 294 (387)
T ss_dssp TSEEEEESGGGCC--------------HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSC--HH-HHHHTTSSCH
T ss_pred CcEEEEcChhhCC--------------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCC--HH-HHHHcCCccH
Confidence 4799999999882 1223334444432 111 1357799999963 11 2333455532
Q ss_pred -------EEEecCCCHHHH
Q psy13774 86 -------LIYIPLPDEIWL 97 (110)
Q Consensus 86 -------~i~~~~P~~~~R 97 (110)
.+.+.+|.-.+|
T Consensus 295 dl~~rl~~~~i~lPpLreR 313 (387)
T 1ny5_A 295 DLYYRLGVIEIEIPPLRER 313 (387)
T ss_dssp HHHHHHTTEEEECCCGGGC
T ss_pred HHHHhhcCCeecCCcchhc
Confidence 345566766655
No 118
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=78.44 E-value=5.5 Score=27.25 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
-++..|-...|.|+++||--+=+ .......+...+..+... +..+|.+|++++.
T Consensus 173 v~iAraL~~~p~lLlLDEPts~L-------------D~~~~~~l~~~l~~l~~~-g~tviivtHd~~~ 226 (267)
T 2zu0_C 173 NDILQMAVLEPELCILDESDSGL-------------DIDALKVVADGVNSLRDG-KRSFIIVTHYQRI 226 (267)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTC-------------CHHHHHHHHHHHHTTCCS-SCEEEEECSSGGG
T ss_pred HHHHHHHHhCCCEEEEeCCCCCC-------------CHHHHHHHHHHHHHHHhc-CCEEEEEeeCHHH
Confidence 45667777899999999954221 112233344445555333 4566677777654
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=77.76 E-value=6.1 Score=28.48 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=33.8
Q ss_pred HHhcCCeEEEEcccccccc-cCCCCC--CCCCCchHHHHHHHHHhhhcCCCCCCEEEEEe
Q psy13774 10 ARAAAPCVLFFDELDSIAK-SRGGSV--GDGGGAADRVINQILTEMDGMGAKKNVFIIGA 66 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~-~r~~~~--~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t 66 (110)
.+...|.+++||.+-++++ ..-... ........+.+++++..+..+....++.||.+
T Consensus 135 ~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp HHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3457899999999999986 221111 11111235667777777766654555555554
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=77.55 E-value=1.3 Score=31.09 Aligned_cols=63 Identities=8% Similarity=0.096 Sum_probs=34.9
Q ss_pred HHHHHHHh-cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecC
Q psy13774 5 TGASMARA-AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68 (110)
Q Consensus 5 ~~F~~A~~-~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn 68 (110)
.+....++ ..|.+|+||.+..+.........+ .......+..++..+..+....++.||.+..
T Consensus 193 ~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~-~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 193 DLQELVSKDPSIKLIVVDSVTSHFRAEYPGREN-LAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp HHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTS-HHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHhccCCCEEEEeCcHHHhhhhhcCccc-HHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 44455566 789999999999998543211111 0011224556666665554444555555533
No 121
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=77.15 E-value=3.9 Score=28.27 Aligned_cols=58 Identities=26% Similarity=0.235 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
+-+++.|-...|.++++||-=+=+ +......+..++..+. ...+.-||.+|++.+.+.
T Consensus 151 Rv~iAraL~~~P~lLlLDEPts~L----------D~~~~~~i~~~l~~l~---~~~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEPTAGL----------DPMGVSEIMKLLVEMQ---KELGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTC----------CHHHHHHHHHHHHHHH---HHHCCEEEEEESCCSSGG
T ss_pred HHHHHHHHHcCCCEEEEECccccC----------CHHHHHHHHHHHHHHH---hhCCCEEEEEecCHHHHH
Confidence 345677778899999999943211 1123333334444432 112446777888776553
No 122
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=76.74 E-value=1.5 Score=30.13 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=14.4
Q ss_pred HHHHhcCCeEEEEcccccccc
Q psy13774 8 SMARAAAPCVLFFDELDSIAK 28 (110)
Q Consensus 8 ~~A~~~~P~ii~iDeiD~l~~ 28 (110)
..|..+.|.+|+|||.-.+..
T Consensus 141 a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 141 YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHTTCCSEEEEEEEC----
T ss_pred HHHHhcCCCEEEEcCccccCC
Confidence 445678899999999998763
No 123
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=75.42 E-value=1.4 Score=28.64 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=30.0
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
...|.+|++||.-............ .....+....++..+..+....++.||.+|+..+.
T Consensus 123 ~~~~~llilDe~~~~l~~~~~~~~~-~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~ 182 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRSEYIGRGA-LAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN 182 (231)
T ss_dssp SSCEEEEEEETSSHHHHHHSCSTTH-HHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--
T ss_pred CCceeEEEECChHHHhccccCCCcc-hhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccC
Confidence 6789999999998876443221110 00111122344444443323345567777775444
No 124
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=75.05 E-value=9.7 Score=21.94 Aligned_cols=19 Identities=11% Similarity=0.260 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.+|++|-
T Consensus 36 ~~a~~~~~~~~~dlii~d~ 54 (134)
T 3f6c_A 36 GSAVQRVETLKPDIVIIDV 54 (134)
T ss_dssp TTHHHHHHHHCCSEEEEET
T ss_pred HHHHHHHHhcCCCEEEEec
Confidence 3456677778899999874
No 125
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=74.57 E-value=10 Score=22.06 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++++......|.+|++|-
T Consensus 40 ~~~a~~~l~~~~~dlii~d~ 59 (142)
T 3cg4_A 40 GGQCIDLLKKGFSGVVLLDI 59 (142)
T ss_dssp HHHHHHHHHTCCCEEEEEES
T ss_pred HHHHHHHHHhcCCCEEEEeC
Confidence 35667777888899999984
No 126
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=74.53 E-value=11 Score=25.58 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.|+++||--+=+ +......+..++..+ .. +..+|.+|++++.+
T Consensus 164 v~lAraL~~~p~lllLDEPts~L----------D~~~~~~i~~~l~~l---~~--~~tviivtH~~~~~ 217 (260)
T 2ghi_A 164 IAIARCLLKDPKIVIFDEATSSL----------DSKTEYLFQKAVEDL---RK--NRTLIIIAHRLSTI 217 (260)
T ss_dssp HHHHHHHHHCCSEEEEECCCCTT----------CHHHHHHHHHHHHHH---TT--TSEEEEECSSGGGS
T ss_pred HHHHHHHHcCCCEEEEECccccC----------CHHHHHHHHHHHHHh---cC--CCEEEEEcCCHHHH
Confidence 35667777899999999954221 112333444444444 22 23566677776543
No 127
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=74.16 E-value=12 Score=25.58 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
+-++..|-...|.|+++||--+-+ +.... ..+...+..+....+..+|.+|++++
T Consensus 164 Rv~lAraL~~~p~lllLDEPts~L----------D~~~~---~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATSAL----------DAGNQ---LRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTC----------CHHHH---HHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCC----------CHHHH---HHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 345667778899999999955221 11222 33444444443333445666777654
No 128
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=73.58 E-value=1.8 Score=31.68 Aligned_cols=64 Identities=9% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRP 70 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~ 70 (110)
+........|.+|+||++-.++......... .....+.+..++..+..+....++.||.++...
T Consensus 265 ~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~-l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 265 AAQMMSESRFSLIVVDSVMALYRTDFSGRGE-LSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp HHHHHHHSCEEEEEEETGGGGCC------CC-HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHhcCCceEEecchhhhCchhhcCccc-hHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 3445556789999999999887543221111 011233445566666555444456666666653
No 129
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=73.17 E-value=15 Score=25.05 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-.+..|-...|.++++||--
T Consensus 136 Rv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 136 LVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp HHHHHHHHHTCCSEEEEECTT
T ss_pred HHHHHHHHHhCCCEEEEECCc
Confidence 345667778899999999954
No 130
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=72.82 E-value=6 Score=23.05 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++........|.+|++|-
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~ 55 (140)
T 2qr3_A 36 PVSLSTVLREENPEVVLLDM 55 (140)
T ss_dssp HHHHHHHHHHSCEEEEEEET
T ss_pred HHHHHHHHHcCCCCEEEEeC
Confidence 34566777788899999974
No 131
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=72.78 E-value=4.7 Score=23.31 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.++++......|.+|++|-
T Consensus 41 ~~a~~~l~~~~~dlvi~d~ 59 (130)
T 3eod_A 41 VDALELLGGFTPDLMICDI 59 (130)
T ss_dssp HHHHHHHTTCCCSEEEECC
T ss_pred HHHHHHHhcCCCCEEEEec
Confidence 4566777778899999874
No 132
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=72.62 E-value=2.6 Score=29.96 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=34.6
Q ss_pred HHHHHHh--cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 6 GASMARA--AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 6 ~F~~A~~--~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
+....+. ..+.+|+||.+..++......... .......+..++..+..+....++.||.+.....
T Consensus 209 l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~-~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 209 VAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGE-LAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGC-HHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHhcCCCccEEEEechHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 3455556 789999999999998543211111 0011223555655555554444556666544333
No 133
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=71.20 E-value=6.9 Score=23.34 Aligned_cols=20 Identities=5% Similarity=0.011 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++++......|.+|++|-
T Consensus 55 ~~~al~~l~~~~~dlii~D~ 74 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDV 74 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECS
T ss_pred HHHHHHHhhccCCCEEEEeC
Confidence 35667777888899999874
No 134
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=69.89 E-value=7.4 Score=26.64 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=29.4
Q ss_pred HHHHHHhc------CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 6 GASMARAA------APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 6 ~F~~A~~~------~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
.+..|-.+ .|.++++||-=+=+ +......+..++..+ ....+.-+|.+|++.+.
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDEPts~L----------D~~~~~~i~~~l~~l---~~~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDEPTSAL----------DLYHQQHTLRLLRQL---TRQEPLAVCCVLHDLNL 210 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECCCCSSC----------CHHHHHHHHHHHHHH---HHHSSEEEEEECSCHHH
T ss_pred HHHHHHhcccccCCCCCEEEEeCccccC----------CHHHHHHHHHHHHHH---HHcCCCEEEEEEcCHHH
Confidence 45555566 89999999943111 112233333333333 23445567778887653
No 135
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=69.60 E-value=12 Score=25.12 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-++..|-...|.++++||--+-+ +......+..++..+. . +..+|.+|++++.
T Consensus 153 Rv~iAraL~~~p~lllLDEPts~L----------D~~~~~~i~~~l~~~~----~-g~tviivtH~~~~ 206 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEATSAL----------DYESEHVIMRNMHKIC----K-GRTVIIIAHRLST 206 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCC----------CHHHHHHHHHHHHHHH----T-TSEEEEECSSGGG
T ss_pred HHHHHHHHhcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHc----C-CCEEEEEeCCHHH
Confidence 345667778899999999955321 1123334444444442 2 3355666776553
No 136
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=69.46 E-value=2 Score=30.00 Aligned_cols=61 Identities=8% Similarity=0.122 Sum_probs=34.0
Q ss_pred HHHHHHh-cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEec
Q psy13774 6 GASMARA-AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGAT 67 (110)
Q Consensus 6 ~F~~A~~-~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tt 67 (110)
+....++ ..+.+|+||.+..+.........+ .......+..++..+..+....++.||.+.
T Consensus 195 l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~-~~~r~~~~~~~~~~L~~la~~~~~~vi~~n 256 (322)
T 2i1q_A 195 IEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGK-LAERQQKLGRHMATLNKLADLFNCVVLVTN 256 (322)
T ss_dssp HHHHHHTTCEEEEEEEECSSHHHHHHCCCTTS-HHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhhccCccEEEEECcHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 4445555 678999999999997542211111 001123455666666555444555666653
No 137
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=69.43 E-value=7.5 Score=25.77 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-++..|-...|.++++||--
T Consensus 148 rv~laral~~~p~lllLDEPt 168 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEPT 168 (224)
T ss_dssp HHHHHHHTTTCCSEEEEESTT
T ss_pred HHHHHHHHHcCCCEEEEeCCC
Confidence 345667778899999999954
No 138
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=69.32 E-value=12 Score=21.64 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++........|.+|++|-
T Consensus 43 ~~~a~~~l~~~~~dlii~d~ 62 (143)
T 3cnb_A 43 PFDAGDLLHTVKPDVVMLDL 62 (143)
T ss_dssp HHHHHHHHHHTCCSEEEEET
T ss_pred HHHHHHHHHhcCCCEEEEec
Confidence 34566777788899999884
No 139
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=69.31 E-value=4.8 Score=26.98 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
+-++..|-.+.|.++++||-=+=+ +......+..++..+. ...+.-+|.+|++++
T Consensus 153 Rv~iAral~~~p~llllDEPts~L----------D~~~~~~i~~~l~~l~---~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWAL----------DSKTGEKIMQLLKKLN---EEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTS----------CHHHHHHHHHHHHHHH---HHHCCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HHcCCEEEEEcCCHH
Confidence 345677778899999999954221 1122333333333332 222446777788764
No 140
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=68.64 E-value=3.4 Score=30.39 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.5
Q ss_pred HhcCCeEEEEccccccccc
Q psy13774 11 RAAAPCVLFFDELDSIAKS 29 (110)
Q Consensus 11 ~~~~P~ii~iDeiD~l~~~ 29 (110)
+++.|.+|+||++..+...
T Consensus 310 ~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 310 QESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp TTTCCCEEEEECGGGSCCS
T ss_pred HHcCCCEEEEccHHHhccC
Confidence 3468999999999998643
No 141
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=68.03 E-value=9.6 Score=25.81 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. ...+..+|.+|++++.
T Consensus 136 rv~lAraL~~~p~lllLDEPts~L----------D~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSAL----------DLANQDIVLSLLIDLA---QSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTS----------CHHHHHHHHHHHHHHH---HTSCCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHH
Confidence 345667778899999999954221 1123333444444432 2323456667776543
No 142
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=67.48 E-value=9.3 Score=22.75 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..+++.......|.+|++|-
T Consensus 40 ~~~a~~~l~~~~~dlii~D~ 59 (153)
T 3cz5_A 40 AGEAYRLYRETTPDIVVMDL 59 (153)
T ss_dssp HHHHHHHHHTTCCSEEEECS
T ss_pred HHHHHHHHhcCCCCEEEEec
Confidence 35667777788899999874
No 143
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=67.28 E-value=4.1 Score=24.09 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=17.7
Q ss_pred HHHHHhcCCeEEEEcccccccc
Q psy13774 7 ASMARAAAPCVLFFDELDSIAK 28 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD~l~~ 28 (110)
.+.|+.+.|.|||+||=..+..
T Consensus 69 ~~e~~~~~P~vV~vd~~N~i~~ 90 (97)
T 1uhe_A 69 EDEINAHKPSIVLVDEKNEILE 90 (97)
T ss_dssp HHHHHHCCCEEEEECTTSCEEE
T ss_pred HHHHhcCCCEEEEECCCCCEEE
Confidence 3578899999999999766643
No 144
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=66.97 E-value=9.6 Score=22.67 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++.+......|.+|++|-
T Consensus 50 ~~~a~~~l~~~~~dlii~d~ 69 (152)
T 3eul_A 50 GAAALELIKAHLPDVALLDY 69 (152)
T ss_dssp HHHHHHHHHHHCCSEEEEET
T ss_pred HHHHHHHHHhcCCCEEEEeC
Confidence 35667777788899999984
No 145
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=66.91 E-value=17 Score=23.99 Aligned_cols=56 Identities=5% Similarity=-0.034 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
-.+..|-...|.++++||--+-+ +......+..++..+.. . +..+|.+|++++.+.
T Consensus 142 v~laraL~~~p~lllLDEPts~L----------D~~~~~~l~~~l~~~~~---~-g~tiiivtHd~~~~~ 197 (214)
T 1sgw_A 142 VQLASTLLVNAEIYVLDDPVVAI----------DEDSKHKVLKSILEILK---E-KGIVIISSREELSYC 197 (214)
T ss_dssp HHHHHHTTSCCSEEEEESTTTTS----------CTTTHHHHHHHHHHHHH---H-HSEEEEEESSCCTTS
T ss_pred HHHHHHHHhCCCEEEEECCCcCC----------CHHHHHHHHHHHHHHHh---C-CCEEEEEeCCHHHHH
Confidence 45666777889999999965322 11233344444444421 1 235666777766543
No 146
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=66.62 E-value=15 Score=23.41 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=11.2
Q ss_pred cCCeEEEEccccccc
Q psy13774 13 AAPCVLFFDELDSIA 27 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~ 27 (110)
..|.++++||.++-+
T Consensus 85 ~~~~~llLDEp~a~L 99 (173)
T 3kta_B 85 KPAPFYLFDEIDAHL 99 (173)
T ss_dssp SCCSEEEEESTTTTC
T ss_pred CCCCEEEECCCccCC
Confidence 345799999998543
No 147
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=66.40 E-value=3.6 Score=24.31 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=16.5
Q ss_pred HHHHHhcCCeEEEEccccccc
Q psy13774 7 ASMARAAAPCVLFFDELDSIA 27 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD~l~ 27 (110)
.+.|+.+.|.++|+||=..+.
T Consensus 71 ~~e~~~~~P~vV~vd~~N~i~ 91 (96)
T 1vc3_B 71 EEEARNLKPTVVLVDERNRIL 91 (96)
T ss_dssp HHHHTTCCCEEEEECTTCCEE
T ss_pred HHHHhcCCCEEEEECCCCCEE
Confidence 357889999999999965543
No 148
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=66.39 E-value=12 Score=25.23 Aligned_cols=55 Identities=20% Similarity=0.101 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-.+..|-...|.++++||--+=+ +......+..++..+ .. .+..+|.+|++++.+
T Consensus 152 v~iAraL~~~p~lllLDEPts~L----------D~~~~~~l~~~l~~l---~~-~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGL----------DIDALKVVARGVNAM---RG-PNFGALVITHYQRIL 206 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTT----------CHHHHHHHHHHHHHH---CS-TTCEEEEECSSSGGG
T ss_pred HHHHHHHHcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHH---Hh-cCCEEEEEecCHHHH
Confidence 35666777899999999965322 112333333344333 22 244666777776543
No 149
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=65.53 E-value=18 Score=25.75 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=13.2
Q ss_pred HHHhcCC--eEEEEcccccc
Q psy13774 9 MARAAAP--CVLFFDELDSI 26 (110)
Q Consensus 9 ~A~~~~P--~ii~iDeiD~l 26 (110)
.+-...| .|+++||.++=
T Consensus 308 ~~l~~~~~~~~LlLDEpt~~ 327 (415)
T 4aby_A 308 VSTVLGADTPSVVFDEVDAG 327 (415)
T ss_dssp HHHHHCCSSSEEEESSTTTT
T ss_pred HHHHhCCCCCEEEEECCCCC
Confidence 3445667 99999999843
No 150
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=65.49 E-value=11 Score=25.75 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-++..|-...|.++++||--+=+ +......+..++..+. .. +..||.+|++.+.
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~L----------D~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~~ 221 (263)
T 2olj_A 167 RVAIARALAMEPKIMLFDEPTSAL----------DPEMVGEVLSVMKQLA---NE-GMTMVVVTHEMGF 221 (263)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTS----------CHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHH
T ss_pred HHHHHHHHHCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHHH
Confidence 345677778899999999954221 1123333444444442 22 4466777777543
No 151
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=65.49 E-value=3.8 Score=29.22 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=30.9
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
..|.+|+|||+-+++......... .......+..++..+..+....++.||.+++.....+
T Consensus 230 ~~~~llIlDs~ta~ld~~~~~~~~-~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEYIGRGA-LAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp SCEEEEEEETSSTTHHHHCCSTTT-HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred CCCCEEEEeCchHhhhhhhccccc-HHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 689999999999887443211111 0011123445555554443344556666666554443
No 152
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=65.23 E-value=5.3 Score=25.43 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=9.9
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
+.+|+|||++...
T Consensus 116 ~~~lilDei~~~~ 128 (202)
T 2w58_A 116 VPVLMLDDLGAEA 128 (202)
T ss_dssp SSEEEEEEECCC-
T ss_pred CCEEEEcCCCCCc
Confidence 4699999997653
No 153
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=64.71 E-value=12 Score=21.60 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.++........|.+|++|-
T Consensus 44 ~~a~~~~~~~~~dlii~d~ 62 (140)
T 3cg0_A 44 EEAVRCAPDLRPDIALVDI 62 (140)
T ss_dssp HHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHhCCCCEEEEec
Confidence 4566777778899999984
No 154
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=64.59 E-value=4.9 Score=23.96 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=16.6
Q ss_pred HHHHHhcCCeEEEEccccccc
Q psy13774 7 ASMARAAAPCVLFFDELDSIA 27 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD~l~ 27 (110)
.+.|+.+.|.+||+||=-.+.
T Consensus 70 ~~e~~~~~P~vv~vd~~N~i~ 90 (102)
T 3plx_B 70 EEEAKTFKPKVVFVDENNTAT 90 (102)
T ss_dssp HHHHHHCCCEEEEECTTSCEE
T ss_pred HHHHhcCCCEEEEECCCCcEE
Confidence 367889999999999955444
No 155
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=64.40 E-value=9.5 Score=25.95 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. .. +..||.+|++.+.
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~L----------D~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~~ 215 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSAL----------DPELVGEVLRIMQQLA---EE-GKTMVVVTHEMGF 215 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTS----------CHHHHHHHHHHHHHHH---HT-TCCEEEECSCHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHH
Confidence 345677788999999999954211 1133334444444442 22 3456667776543
No 156
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=64.26 E-value=6.9 Score=25.19 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=11.0
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
-..|++||+|.+.
T Consensus 159 ~~~lViDEah~~~ 171 (220)
T 1t6n_A 159 IKHFILDECDKML 171 (220)
T ss_dssp CCEEEEESHHHHH
T ss_pred CCEEEEcCHHHHh
Confidence 4689999999885
No 157
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=64.08 E-value=5.9 Score=23.96 Aligned_cols=20 Identities=0% Similarity=-0.187 Sum_probs=14.3
Q ss_pred HHHHHHHHHhc--CCeEEEEcc
Q psy13774 3 IATGASMARAA--APCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~--~P~ii~iDe 22 (110)
..++++..... .|.+|++|-
T Consensus 70 ~~~al~~l~~~~~~~dliilD~ 91 (157)
T 3hzh_A 70 GEEAVIKYKNHYPNIDIVTLXI 91 (157)
T ss_dssp HHHHHHHHHHHGGGCCEEEECS
T ss_pred HHHHHHHHHhcCCCCCEEEEec
Confidence 34566677777 788999874
No 158
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=63.53 E-value=3.3 Score=27.01 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=11.5
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-+.|++||+|.+..
T Consensus 168 ~~~lViDEah~~~~ 181 (228)
T 3iuy_A 168 ITYLVIDEADKMLD 181 (228)
T ss_dssp CCEEEECCHHHHHH
T ss_pred ceEEEEECHHHHhc
Confidence 46899999998864
No 159
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=62.84 E-value=8.2 Score=33.63 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCC---CCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSV---GDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~---~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn 68 (110)
|..+...++..+|++|+||.+.++.+...-.. ....+-..+..++.|..+.+.-...++.+|++-.
T Consensus 1498 l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~ 1566 (1706)
T 3cmw_A 1498 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1566 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeec
Confidence 45677888999999999999999998764321 1222234566666676666654455666666544
No 160
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=62.73 E-value=11 Score=27.10 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=30.2
Q ss_pred HhcCCeEEEEcccccccccCCCCCC--C-C--CCchHHHHHHHHHhhhcCCCCCCEEEEEe
Q psy13774 11 RAAAPCVLFFDELDSIAKSRGGSVG--D-G--GGAADRVINQILTEMDGMGAKKNVFIIGA 66 (110)
Q Consensus 11 ~~~~P~ii~iDeiD~l~~~r~~~~~--~-~--~~~~~~~~~~ll~~ld~~~~~~~v~vi~t 66 (110)
+..+|.+|+||-+-++.+...-... + . +....+.+++++..+..+....++.+|.+
T Consensus 108 ~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp CTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 4568999999999999853321111 1 0 01244566666666554434445444443
No 161
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=62.09 E-value=24 Score=25.03 Aligned_cols=18 Identities=17% Similarity=0.052 Sum_probs=13.6
Q ss_pred HHHhcC-CeEEEEcccccc
Q psy13774 9 MARAAA-PCVLFFDELDSI 26 (110)
Q Consensus 9 ~A~~~~-P~ii~iDeiD~l 26 (110)
.|-... |.++++||.++-
T Consensus 299 ~~l~~~~~~~lllDEp~~~ 317 (371)
T 3auy_A 299 NALIGNRVECIILDEPTVY 317 (371)
T ss_dssp HHHHSSCCSEEEEESTTTT
T ss_pred HHHhcCCCCeEEEeCCCCc
Confidence 333567 999999999843
No 162
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=62.02 E-value=5.4 Score=25.87 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=12.3
Q ss_pred HhcCCeEEEEcccccc
Q psy13774 11 RAAAPCVLFFDELDSI 26 (110)
Q Consensus 11 ~~~~P~ii~iDeiD~l 26 (110)
....|.|+++||++.+
T Consensus 102 ~~~~~dvlilDE~g~~ 117 (189)
T 2i3b_A 102 SGPGQRVCVIDEIGKM 117 (189)
T ss_dssp CSSCCCCEEECCCSTT
T ss_pred hccCCCEEEEeCCCcc
Confidence 3567899999997544
No 163
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=61.90 E-value=21 Score=20.69 Aligned_cols=61 Identities=5% Similarity=0.050 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC--CCCCEEEEEecCCCCCCCccccC
Q psy13774 3 IATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG--AKKNVFIIGATNRPDIIDPAILR 79 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--~~~~v~vi~ttn~~~~ld~al~r 79 (110)
..+++.......|.+|++|-- .+..++ .+++..+.... ...+++++.+....+.+-.++..
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~---l~~~~g-------------~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ 97 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMD---IIGENS-------------PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHS 97 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETT---C-------------------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTC
T ss_pred HHHHHHHHhcCCCCEEEEeCC---CCCCcH-------------HHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhc
Confidence 356777788889999999841 111100 12444444433 33466666665555555555543
No 164
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=61.85 E-value=4.9 Score=28.90 Aligned_cols=59 Identities=25% Similarity=0.419 Sum_probs=30.5
Q ss_pred HHhcCCeEEEEcccccccccCC--CCCCCC-CCchHHHHHHHHHhhhcCCCCCCEEEEEecC
Q psy13774 10 ARAAAPCVLFFDELDSIAKSRG--GSVGDG-GGAADRVINQILTEMDGMGAKKNVFIIGATN 68 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~~r~--~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn 68 (110)
++...+.+|+||.+..+..... +...+. .....+.+..++..+..+....++.||++..
T Consensus 137 ~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 137 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp HHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 3457899999999999985321 110010 0012234455555554443344556665443
No 165
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=61.81 E-value=7.1 Score=26.95 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCeEEEEcccc
Q psy13774 5 TGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD 24 (110)
-.+..|-...|.++++||-=
T Consensus 170 v~lAraL~~~p~lLlLDEPt 189 (279)
T 2ihy_A 170 VMIARALMGQPQVLILDEPA 189 (279)
T ss_dssp HHHHHHHHTCCSEEEEESTT
T ss_pred HHHHHHHhCCCCEEEEeCCc
Confidence 35667778899999999954
No 166
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=61.77 E-value=32 Score=22.83 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCeEEEEcccc
Q psy13774 5 TGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD 24 (110)
-.+..|-...|.|+++||--
T Consensus 136 v~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 136 VSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp HHHHHHHHHCCSEEEEESTT
T ss_pred HHHHHHHhcCCCEEEEeCcc
Confidence 35667778899999999954
No 167
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=61.72 E-value=14 Score=21.63 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.++........|.+|++|-
T Consensus 42 ~~a~~~l~~~~~dlii~d~ 60 (147)
T 2zay_A 42 IEAVPVAVKTHPHLIITEA 60 (147)
T ss_dssp HHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHcCCCCEEEEcC
Confidence 4566677777899999974
No 168
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=61.58 E-value=19 Score=20.42 Aligned_cols=19 Identities=21% Similarity=0.036 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.++++|-
T Consensus 37 ~~~~~~~~~~~~dlvi~D~ 55 (126)
T 1dbw_A 37 EAFLAFAPDVRNGVLVTDL 55 (126)
T ss_dssp HHHHHHGGGCCSEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEC
Confidence 3455666677889998873
No 169
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=61.56 E-value=12 Score=21.62 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.++.+......|.+|++|-
T Consensus 39 ~~al~~~~~~~~dlvilD~ 57 (133)
T 3b2n_A 39 LDAMKLIEEYNPNVVILDI 57 (133)
T ss_dssp HHHHHHHHHHCCSEEEECS
T ss_pred HHHHHHHhhcCCCEEEEec
Confidence 4566667777899999874
No 170
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=61.38 E-value=9 Score=27.77 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
+-..++|-.+.|.++++||-=+-+ +......+-.++..+ ....+.-+|..|++.+.
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~L----------D~~~~~~i~~lL~~l---~~~~g~Tii~vTHdl~~ 226 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSAL----------DPATTRSILELLKDI---NRRLGLTILLITHEMDV 226 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTS----------CHHHHHHHHHHHHHH---HHHSCCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccC----------CHHHHHHHHHHHHHH---HHhCCCEEEEEecCHHH
Confidence 345667778899999999943211 112233333344333 22334566777777643
No 171
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=61.08 E-value=17 Score=21.25 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++++......|.+|++|-
T Consensus 40 ~~~a~~~l~~~~~dlii~D~ 59 (144)
T 3kht_A 40 GAKALYQVQQAKYDLIILDI 59 (144)
T ss_dssp HHHHHHHHTTCCCSEEEECT
T ss_pred HHHHHHHhhcCCCCEEEEeC
Confidence 35667777788899999874
No 172
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.83 E-value=4.6 Score=26.15 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.5
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-.+|++||+|.+..
T Consensus 151 ~~~lViDEah~~~~ 164 (219)
T 1q0u_A 151 AHILVVDEADLMLD 164 (219)
T ss_dssp CCEEEECSHHHHHH
T ss_pred ceEEEEcCchHHhh
Confidence 46899999998853
No 173
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=60.31 E-value=4.7 Score=25.66 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=11.5
Q ss_pred CCeEEEEccccccc
Q psy13774 14 APCVLFFDELDSIA 27 (110)
Q Consensus 14 ~P~ii~iDeiD~l~ 27 (110)
.-.+|++||+|.+.
T Consensus 146 ~~~~lViDEah~~~ 159 (206)
T 1vec_A 146 HVQMIVLDEADKLL 159 (206)
T ss_dssp TCCEEEEETHHHHT
T ss_pred cCCEEEEEChHHhH
Confidence 34789999999875
No 174
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=60.21 E-value=4.1 Score=26.34 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=11.6
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-++|++||+|.+..
T Consensus 156 ~~~iViDEah~~~~ 169 (224)
T 1qde_A 156 IKMFILDEADEMLS 169 (224)
T ss_dssp CCEEEEETHHHHHH
T ss_pred CcEEEEcChhHHhh
Confidence 47999999998754
No 175
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=60.08 E-value=3.7 Score=26.11 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=11.4
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-.+|++||+|.+..
T Consensus 145 ~~~iViDEah~~~~ 158 (207)
T 2gxq_A 145 VEVAVLDEADEMLS 158 (207)
T ss_dssp CSEEEEESHHHHHH
T ss_pred ceEEEEEChhHhhc
Confidence 46899999998753
No 176
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=59.42 E-value=25 Score=21.96 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=31.3
Q ss_pred cCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHHhh
Q psy13774 67 TNRPDIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFLYK 106 (110)
Q Consensus 67 tn~~~~ld~al~r~grfd~~i~~~~P~~~~R~~~~~~~~~ 106 (110)
++.++...+|...|-++..--+++.||..++..+.+.+.+
T Consensus 85 v~v~d~~~~a~~~Ps~~a~~~WLG~Pdd~~q~lL~~ql~~ 124 (137)
T 1uuz_A 85 VSLPDEPAEVMQTPSKYATYRWYGEPSRQVRELLMKQLES 124 (137)
T ss_dssp EECCSCTTTTTTCGGGTCEEEEESCCCHHHHHHHHHHHHT
T ss_pred EecCCCccccccCcchhheeEeeCCCCHHHHHHHHHHHhc
Confidence 3445555478888889999999999999998888777654
No 177
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=59.10 E-value=19 Score=26.04 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=12.0
Q ss_pred cCCeEEEEccccccc
Q psy13774 13 AAPCVLFFDELDSIA 27 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~ 27 (110)
..|.++++||.++-+
T Consensus 354 ~~~~~lllDEp~~~L 368 (430)
T 1w1w_A 354 QPSPFFVLDEVDAAL 368 (430)
T ss_dssp SCCSEEEESSTTTTC
T ss_pred CCCCEEEeCCCcccC
Confidence 568899999998543
No 178
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=59.09 E-value=33 Score=23.97 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=13.1
Q ss_pred HHHHHhcCCeEEEEcccc
Q psy13774 7 ASMARAAAPCVLFFDELD 24 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD 24 (110)
...|-...|.++++||--
T Consensus 265 ~a~~l~~~p~~lllDEp~ 282 (339)
T 3qkt_A 265 MSLYLAGEISLLILDEPT 282 (339)
T ss_dssp HHHHTTTTTCEEEEECCC
T ss_pred HHHHhcCCCCEEEEECCC
Confidence 344445679999999965
No 179
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=58.58 E-value=15 Score=24.90 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
+-.+..|-...|.++++||--+=+ +......+..++..+. .. +..||.+|++++
T Consensus 154 Rv~lAraL~~~p~lllLDEPts~L----------D~~~~~~l~~~l~~l~---~~-g~tiiivtHd~~ 207 (256)
T 1vpl_A 154 KLLIARALMVNPRLAILDEPTSGL----------DVLNAREVRKILKQAS---QE-GLTILVSSHNML 207 (256)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTC----------CHHHHHHHHHHHHHHH---HT-TCEEEEEECCHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccc----------CHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHH
Confidence 345677778899999999954221 1123334444444442 22 345666777654
No 180
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=58.44 E-value=4.7 Score=26.57 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=25.2
Q ss_pred HHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCc
Q psy13774 7 ASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDP 75 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~ 75 (110)
+..|-...|.++++||--+- .. ..+...+..+ .. +..+| +|++++.++.
T Consensus 115 lAraL~~~p~lllLDEPts~--------------~~---~~l~~~l~~l-~~-g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 115 YMRGRTLNDAFVILDEAQNT--------------TP---AQMKMFLTRL-GF-GSKMV-VTGDITQVDL 163 (208)
T ss_dssp GGTTCCBCSEEEEECSGGGC--------------CH---HHHHHHHTTB-CT-TCEEE-EEEC------
T ss_pred HHHHHhcCCCEEEEeCCccc--------------cH---HHHHHHHHHh-cC-CCEEE-EECCHHHHhC
Confidence 34455678999999996522 12 2333444444 22 44566 8888776663
No 181
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=58.29 E-value=30 Score=21.37 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=12.3
Q ss_pred HHHhcCCeEEEEcccc
Q psy13774 9 MARAAAPCVLFFDELD 24 (110)
Q Consensus 9 ~A~~~~P~ii~iDeiD 24 (110)
.|-...|.++++||--
T Consensus 76 ral~~~p~lllLDEPt 91 (148)
T 1f2t_B 76 LYLAGEISLLILDEPT 91 (148)
T ss_dssp HHHHSSCSEEEEESCS
T ss_pred HHHcCCCCEEEEECCC
Confidence 4455789999999954
No 182
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=58.18 E-value=25 Score=20.34 Aligned_cols=19 Identities=16% Similarity=0.266 Sum_probs=12.7
Q ss_pred HHHHHHHHh------cCCeEEEEcc
Q psy13774 4 ATGASMARA------AAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~------~~P~ii~iDe 22 (110)
.+++...+. ..|.+|++|-
T Consensus 43 ~~a~~~l~~~~~~~~~~~dlii~D~ 67 (143)
T 2qvg_A 43 NQALDMLYGRNKENKIHPKLILLDI 67 (143)
T ss_dssp HHHHHHHHTCTTCCCCCCSEEEEET
T ss_pred HHHHHHHHhcccccCCCCCEEEEec
Confidence 345555555 6788999874
No 183
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=57.47 E-value=26 Score=20.35 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=13.8
Q ss_pred HHHHHHHHh-cCCeEEEEcc
Q psy13774 4 ATGASMARA-AAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~-~~P~ii~iDe 22 (110)
.+++..... ..|.+|++|-
T Consensus 39 ~~a~~~l~~~~~~dlvi~D~ 58 (140)
T 3h5i_A 39 EAAVEKVSGGWYPDLILMDI 58 (140)
T ss_dssp HHHHHHHHTTCCCSEEEEES
T ss_pred HHHHHHHhcCCCCCEEEEec
Confidence 455666666 7899999874
No 184
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=57.34 E-value=6.7 Score=26.56 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=13.4
Q ss_pred cCCeEEEEcccccccc
Q psy13774 13 AAPCVLFFDELDSIAK 28 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~ 28 (110)
..|.+|+|||+-++..
T Consensus 132 ~~~~livlDe~~~~~~ 147 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHI 147 (279)
T ss_dssp TTCSEEEEECGGGGCC
T ss_pred CCCCEEEECCHHHhcC
Confidence 4699999999998764
No 185
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=57.10 E-value=8.6 Score=28.14 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=15.6
Q ss_pred HHhcCCeEEEEcccccccc
Q psy13774 10 ARAAAPCVLFFDELDSIAK 28 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~ 28 (110)
.+.+.|.+|+||.+..+..
T Consensus 306 ~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 306 VSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHSCCCEEEEECGGGCBC
T ss_pred HHHcCCCEEEEcChhhcCC
Confidence 3457899999999999864
No 186
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=56.93 E-value=19 Score=24.06 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCeEEEEcccc
Q psy13774 5 TGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD 24 (110)
-.+..|-...|.++++||--
T Consensus 148 v~lAraL~~~p~lllLDEPt 167 (240)
T 1ji0_A 148 LAIGRALMSRPKLLMMDEPS 167 (240)
T ss_dssp HHHHHHHTTCCSEEEEECTT
T ss_pred HHHHHHHHcCCCEEEEcCCc
Confidence 35667778899999999954
No 187
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=56.66 E-value=6.1 Score=23.16 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=11.5
Q ss_pred HHHHHHHHh-cCCeEEEEc
Q psy13774 4 ATGASMARA-AAPCVLFFD 21 (110)
Q Consensus 4 ~~~F~~A~~-~~P~ii~iD 21 (110)
.++++.... ..|.+|++|
T Consensus 39 ~~a~~~l~~~~~~dlvi~D 57 (140)
T 3lua_A 39 KKFYSIFKDLDSITLIIMD 57 (140)
T ss_dssp HHHHTTTTTCCCCSEEEEC
T ss_pred HHHHHHHhcCCCCcEEEEe
Confidence 344555556 778888876
No 188
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=56.55 E-value=5.7 Score=26.18 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=11.5
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-..|++||+|.+..
T Consensus 177 ~~~lViDEah~l~~ 190 (242)
T 3fe2_A 177 TTYLVLDEADRMLD 190 (242)
T ss_dssp CCEEEETTHHHHHH
T ss_pred ccEEEEeCHHHHhh
Confidence 46899999998864
No 189
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=56.52 E-value=16 Score=21.32 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=13.1
Q ss_pred HHHHHHHH--hcCCeEEEEcc
Q psy13774 4 ATGASMAR--AAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~--~~~P~ii~iDe 22 (110)
.+++.... ...|.+|++|-
T Consensus 37 ~~a~~~~~~~~~~~dlvi~d~ 57 (143)
T 3jte_A 37 TEGLRIFTENCNSIDVVITDM 57 (143)
T ss_dssp HHHHHHHHHTTTTCCEEEEES
T ss_pred HHHHHHHHhCCCCCCEEEEeC
Confidence 44555565 56889999874
No 190
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=56.40 E-value=24 Score=19.68 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.++.+......|.+|++|-
T Consensus 39 ~~a~~~~~~~~~dlvi~d~ 57 (127)
T 2gkg_A 39 KGSVEQIRRDRPDLVVLAV 57 (127)
T ss_dssp HHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 4566677778899999874
No 191
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=56.23 E-value=4.3 Score=26.75 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=11.5
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-.+|++||+|.+..
T Consensus 174 ~~~lViDEah~~~~ 187 (237)
T 3bor_A 174 IKMFVLDEADEMLS 187 (237)
T ss_dssp CCEEEEESHHHHHH
T ss_pred CcEEEECCchHhhc
Confidence 47899999998863
No 192
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=56.22 E-value=24 Score=19.63 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.++++|-
T Consensus 34 ~~a~~~~~~~~~dlil~D~ 52 (121)
T 2pl1_A 34 KEADYYLNEHIPDIAIVDL 52 (121)
T ss_dssp HHHHHHHHHSCCSEEEECS
T ss_pred HHHHHHHhccCCCEEEEec
Confidence 4566677778899999863
No 193
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=55.45 E-value=9.7 Score=24.96 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=11.9
Q ss_pred CeEEEEccccccccc
Q psy13774 15 PCVLFFDELDSIAKS 29 (110)
Q Consensus 15 P~ii~iDeiD~l~~~ 29 (110)
-..|++||+|.+...
T Consensus 176 ~~~lViDEah~~~~~ 190 (245)
T 3dkp_A 176 VEWLVVDESDKLFED 190 (245)
T ss_dssp CCEEEESSHHHHHHH
T ss_pred CcEEEEeChHHhccc
Confidence 467999999998643
No 194
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=55.37 E-value=21 Score=20.79 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.+|++|-
T Consensus 38 ~~a~~~l~~~~~dlvllD~ 56 (137)
T 3cfy_A 38 RDAIQFIERSKPQLIILDL 56 (137)
T ss_dssp HHHHHHHHHHCCSEEEECS
T ss_pred HHHHHHHHhcCCCEEEEec
Confidence 4566677778899999874
No 195
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=55.08 E-value=29 Score=20.13 Aligned_cols=19 Identities=5% Similarity=0.043 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++..+....|.+|++|-
T Consensus 38 ~~al~~~~~~~~dlvllD~ 56 (136)
T 2qzj_A 38 EEAIGKIFSNKYDLIFLEI 56 (136)
T ss_dssp HHHHHHHHHCCCSEEEEES
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 4566777778899999873
No 196
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=54.95 E-value=7.1 Score=25.47 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=10.9
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
-..|++||+|.+.
T Consensus 172 ~~~lViDEah~~~ 184 (236)
T 2pl3_A 172 LQMLVLDEADRIL 184 (236)
T ss_dssp CCEEEETTHHHHH
T ss_pred ccEEEEeChHHHh
Confidence 4589999999876
No 197
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=54.28 E-value=40 Score=21.63 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCeEEEEccccccccc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKS 29 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~ 29 (110)
..+-...+...|..++||.+..+...
T Consensus 125 ~~~~~~~~~~~~~~vviD~~~~l~~~ 150 (251)
T 2zts_A 125 RYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp HHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEEEcHHHHhhh
Confidence 34455667888999999999988643
No 198
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=53.60 E-value=13 Score=22.09 Aligned_cols=19 Identities=5% Similarity=0.031 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.+|++|-
T Consensus 41 ~~a~~~l~~~~~dlvi~d~ 59 (154)
T 2rjn_A 41 LDALEALKGTSVQLVISDM 59 (154)
T ss_dssp HHHHHHHTTSCCSEEEEES
T ss_pred HHHHHHHhcCCCCEEEEec
Confidence 4566777778899999874
No 199
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=53.49 E-value=29 Score=19.70 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..+++.......|.+|++|-
T Consensus 39 ~~~a~~~l~~~~~dlii~d~ 58 (132)
T 3lte_A 39 GFDAGIKLSTFEPAIMTLDL 58 (132)
T ss_dssp HHHHHHHHHHTCCSEEEEES
T ss_pred HHHHHHHHHhcCCCEEEEec
Confidence 35667778888999999874
No 200
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=53.24 E-value=6.8 Score=26.13 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=11.3
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-++|++||+|.+..
T Consensus 187 ~~~lViDEah~l~~ 200 (249)
T 3ber_A 187 LKYLVMDEADRILN 200 (249)
T ss_dssp CCEEEECSHHHHHH
T ss_pred cCEEEEcChhhhhc
Confidence 46899999998753
No 201
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=52.84 E-value=15 Score=26.24 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCeEEEEccc
Q psy13774 5 TGASMARAAAPCVLFFDEL 23 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDei 23 (110)
-++..|-...|.++++||-
T Consensus 136 valAraL~~~P~lLLLDEP 154 (348)
T 3d31_A 136 VALARALVTNPKILLLDEP 154 (348)
T ss_dssp HHHHHHTTSCCSEEEEESS
T ss_pred HHHHHHHHcCCCEEEEECc
Confidence 3566777889999999994
No 202
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=52.18 E-value=25 Score=20.93 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++.+......|.+|++|-
T Consensus 40 ~~~al~~l~~~~~dlii~D~ 59 (154)
T 3gt7_A 40 GREAVRFLSLTRPDLIISDV 59 (154)
T ss_dssp HHHHHHHHTTCCCSEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEeC
Confidence 35667777788899999874
No 203
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=52.17 E-value=25 Score=24.39 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=11.1
Q ss_pred cCCeEEEEcccccc
Q psy13774 13 AAPCVLFFDELDSI 26 (110)
Q Consensus 13 ~~P~ii~iDeiD~l 26 (110)
..|.++++||..+-
T Consensus 240 ~~~~~lllDEp~~~ 253 (322)
T 1e69_A 240 KPSPFYVLDEVDSP 253 (322)
T ss_dssp SCCSEEEEESCCSS
T ss_pred CCCCEEEEeCCCCC
Confidence 45789999998754
No 204
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=51.78 E-value=30 Score=21.68 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=8.3
Q ss_pred CCeEEEEccccccc
Q psy13774 14 APCVLFFDELDSIA 27 (110)
Q Consensus 14 ~P~ii~iDeiD~l~ 27 (110)
...+|++||+|.+.
T Consensus 162 ~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 162 DFSLIIIDECHHTN 175 (216)
T ss_dssp GCSEEEETTC----
T ss_pred cccEEEEECchhhc
Confidence 34699999999885
No 205
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=51.67 E-value=45 Score=21.38 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=29.8
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR 69 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~ 69 (110)
+-+..++..|.+|+||++..+... . .....+.+..+...+.. .++.++.+++.
T Consensus 120 i~~~~~~~~~~~vviD~~~~l~~~----~---~~~~~~~l~~l~~~~~~----~~~~vi~~~h~ 172 (247)
T 2dr3_A 120 LRQAIRDINAKRVVVDSVTTLYIN----K---PAMARSIILQLKRVLAG----TGCTSIFVSQV 172 (247)
T ss_dssp HHHHHHHHTCCEEEEETSGGGTTT----C---GGGHHHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred HHHHHHHhCCCEEEECCchHhhcC----C---HHHHHHHHHHHHHHHHH----CCCeEEEEecC
Confidence 334445578999999999988621 1 11344555555555533 23344444443
No 206
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=51.41 E-value=15 Score=26.44 Aligned_cols=19 Identities=42% Similarity=0.503 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCeEEEEccc
Q psy13774 5 TGASMARAAAPCVLFFDEL 23 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDei 23 (110)
-+...|-...|.++++||-
T Consensus 154 valArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 154 VALARALAPRPQVLLFDEP 172 (355)
T ss_dssp HHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHcCCCEEEEeCC
Confidence 3566777889999999994
No 207
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=51.37 E-value=9.1 Score=26.40 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=11.1
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
-.+|+|||+|.+.
T Consensus 236 l~~lVlDEad~l~ 248 (300)
T 3fmo_B 236 IKVFVLDEADVMI 248 (300)
T ss_dssp CSEEEETTHHHHH
T ss_pred ceEEEEeCHHHHh
Confidence 4689999999886
No 208
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=50.84 E-value=32 Score=19.39 Aligned_cols=19 Identities=11% Similarity=-0.032 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.++++|-
T Consensus 39 ~~a~~~~~~~~~dlvi~D~ 57 (128)
T 1jbe_A 39 VDALNKLQAGGYGFVISDW 57 (128)
T ss_dssp HHHHHHHTTCCCCEEEEES
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 3456666677788888863
No 209
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=50.81 E-value=16 Score=21.69 Aligned_cols=20 Identities=0% Similarity=-0.042 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..+++.......|.+|++|-
T Consensus 47 ~~~a~~~l~~~~~dlvi~D~ 66 (153)
T 3hv2_A 47 ATQALQLLASREVDLVISAA 66 (153)
T ss_dssp HHHHHHHHHHSCCSEEEEES
T ss_pred HHHHHHHHHcCCCCEEEEeC
Confidence 35677778888999999875
No 210
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=50.80 E-value=21 Score=25.75 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCeEEEEccc
Q psy13774 4 ATGASMARAAAPCVLFFDEL 23 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDei 23 (110)
+-++..|-...|.++++||=
T Consensus 146 RValArAL~~~P~lLLLDEP 165 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEP 165 (359)
T ss_dssp HHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHHcCCCEEEEeCC
Confidence 34567777889999999994
No 211
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=50.76 E-value=23 Score=24.61 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=28.3
Q ss_pred HhcCCe--EEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecC
Q psy13774 11 RAAAPC--VLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68 (110)
Q Consensus 11 ~~~~P~--ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn 68 (110)
+++.+. +|+||-+..+..... . ......+..+...+..+....++.|++++.
T Consensus 176 ~~~~~~~~lVVID~l~~l~~~~~----~--~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsq 229 (315)
T 3bh0_A 176 RKNPGKRVIVMIDYLQLLEPAKA----N--DSRTNQISQISRDLKKMARELDVVVIALSQ 229 (315)
T ss_dssp HTSSSCCEEEEEECGGGSBCSCT----T--SCHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HhcCCCCeEEEEeCchhcCCCCC----C--CCHHHHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 344667 999999998864211 0 122234445555554443444555555544
No 212
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=50.65 E-value=15 Score=26.49 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-++..|-...|.++++||==
T Consensus 147 RvalArAL~~~P~lLLLDEP~ 167 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPL 167 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTT
T ss_pred HHHHHHHHhcCCCEEEECCCC
Confidence 345677888999999999943
No 213
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=50.43 E-value=7 Score=25.54 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=11.3
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-.+|++||+|.+..
T Consensus 167 ~~~lViDEah~~~~ 180 (230)
T 2oxc_A 167 IRLFILDEADKLLE 180 (230)
T ss_dssp CCEEEESSHHHHHS
T ss_pred CCEEEeCCchHhhc
Confidence 35899999998864
No 214
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=50.30 E-value=46 Score=21.11 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCcc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRL 83 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grf 83 (110)
.+++..+....|.+|++|-- .+.. ..- +++..+.......+++++.+....+....++.. |-.
T Consensus 41 ~~a~~~~~~~~~dlvllD~~---l~~~---------~g~----~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~-ga~ 103 (233)
T 1ys7_A 41 AEALRSATENRPDAIVLDIN---MPVL---------DGV----SVVTALRAMDNDVPVCVLSARSSVDDRVAGLEA-GAD 103 (233)
T ss_dssp HHHHHHHHHSCCSEEEEESS---CSSS---------CHH----HHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTT-TCS
T ss_pred HHHHHHHHhCCCCEEEEeCC---CCCC---------CHH----HHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHc-CCC
Confidence 45667777888999998741 1110 111 244444433344567766666666666655544 443
No 215
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=50.19 E-value=24 Score=20.26 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.+|++|-
T Consensus 37 ~~al~~~~~~~~dlvl~D~ 55 (132)
T 3crn_A 37 GEGLAKIENEFFNLALFXI 55 (132)
T ss_dssp HHHHHHHHHSCCSEEEECS
T ss_pred HHHHHHHhcCCCCEEEEec
Confidence 4566677778899999873
No 216
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=50.06 E-value=35 Score=21.53 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++..+....|.+|++|-
T Consensus 36 ~~a~~~~~~~~~dlvllD~ 54 (225)
T 1kgs_A 36 EEGMYMALNEPFDVVILDI 54 (225)
T ss_dssp HHHHHHHHHSCCSEEEEES
T ss_pred HHHHHHHhcCCCCEEEEeC
Confidence 4566777788899999874
No 217
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=49.87 E-value=9.5 Score=24.07 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=17.5
Q ss_pred HHHHHhcCCeEEEEcccccccc
Q psy13774 7 ASMARAAAPCVLFFDELDSIAK 28 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD~l~~ 28 (110)
.+.|+.+.|.|||+||-..+..
T Consensus 112 ~~E~~~~~P~VV~vd~~N~i~~ 133 (143)
T 1pqh_A 112 DEEARTWRPNVAYFEGDNEMKR 133 (143)
T ss_dssp HHHHTTCCCEEEEEETTTEECC
T ss_pred HHHhccCCCeEEEECCCCCEEE
Confidence 3568889999999999776643
No 218
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=49.76 E-value=19 Score=23.52 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=10.6
Q ss_pred cCCeEEEEccccc
Q psy13774 13 AAPCVLFFDELDS 25 (110)
Q Consensus 13 ~~P~ii~iDeiD~ 25 (110)
..-.+|+|||+|.
T Consensus 175 ~~~~~lVlDEah~ 187 (235)
T 3llm_A 175 RGISHVIVDEIHE 187 (235)
T ss_dssp TTCCEEEECCTTS
T ss_pred cCCcEEEEECCcc
Confidence 4457999999996
No 219
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=49.59 E-value=24 Score=20.42 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++++......|.+|++|-
T Consensus 37 ~~~a~~~l~~~~~dlvi~d~ 56 (142)
T 2qxy_A 37 EQEAFTFLRREKIDLVFVDV 56 (142)
T ss_dssp HHHHHHHHTTSCCSEEEEEC
T ss_pred HHHHHHHHhccCCCEEEEeC
Confidence 34667777788899999985
No 220
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=49.56 E-value=16 Score=26.30 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCeEEEEccc
Q psy13774 4 ATGASMARAAAPCVLFFDEL 23 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDei 23 (110)
+-+...|-...|.++++||-
T Consensus 141 RvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp HHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHHHcCCCEEEEECC
Confidence 34567777899999999994
No 221
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=48.88 E-value=7.5 Score=26.18 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-.+..|-...|.++++||-=
T Consensus 134 Rv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTT
T ss_pred HHHHHHHHHcCCCEEEEeCCc
Confidence 345667778899999999944
No 222
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=48.53 E-value=38 Score=19.68 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++..+....|.+|++|-
T Consensus 39 ~~al~~~~~~~~dlvllD~ 57 (141)
T 3cu5_A 39 INAIQIALKHPPNVLLTDV 57 (141)
T ss_dssp HHHHHHHTTSCCSEEEEES
T ss_pred HHHHHHHhcCCCCEEEEeC
Confidence 3456666677889999874
No 223
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=48.39 E-value=15 Score=26.76 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCeEEEEccc
Q psy13774 5 TGASMARAAAPCVLFFDEL 23 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDei 23 (110)
-+...|-...|.++++||=
T Consensus 142 VaiArAL~~~P~lLLLDEP 160 (381)
T 3rlf_A 142 VAIGRTLVAEPSVFLLDEP 160 (381)
T ss_dssp HHHHHHHHHCCSEEEEEST
T ss_pred HHHHHHHHcCCCEEEEECC
Confidence 3566677789999999993
No 224
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=48.34 E-value=9.3 Score=23.98 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=16.1
Q ss_pred HHHHHhcCCeEEEEcccccccc
Q psy13774 7 ASMARAAAPCVLFFDELDSIAK 28 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD~l~~ 28 (110)
.+.|+.+.|.|||+||=..+..
T Consensus 95 ~~E~~~~~P~vV~vd~~N~i~~ 116 (139)
T 2c45_A 95 DARARTYQPRIVFVDAYNKPID 116 (139)
T ss_dssp HHHHHSCCCEEEECCTTCC---
T ss_pred HHHhccCCCeEEEECCCCCEEE
Confidence 3578899999999999766643
No 225
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=48.05 E-value=9 Score=22.24 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++........|.+|++|-
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~ 59 (137)
T 3hdg_A 40 GEEGERLFGLHAPDVIITDI 59 (137)
T ss_dssp HHHHHHHHHHHCCSEEEECS
T ss_pred HHHHHHHHhccCCCEEEEeC
Confidence 35667777788899999974
No 226
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=47.81 E-value=19 Score=26.01 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-+...|-...|.++++||-=
T Consensus 149 RvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHHHhcCCCEEEEcCCC
Confidence 345677778999999999943
No 227
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=46.57 E-value=27 Score=19.44 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.+|++|-
T Consensus 37 ~~a~~~~~~~~~dlil~D~ 55 (120)
T 1tmy_A 37 REAVEKYKELKPDIVTMDI 55 (120)
T ss_dssp HHHHHHHHHHCCSEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 4566677777899999874
No 228
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=46.53 E-value=41 Score=21.88 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++++.+....|.+|++|-
T Consensus 56 ~~~al~~~~~~~~dlvllD~ 75 (250)
T 3r0j_A 56 GAQALDRARETRPDAVILDV 75 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEeC
Confidence 34667777788899999873
No 229
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=46.42 E-value=23 Score=26.17 Aligned_cols=54 Identities=11% Similarity=0.298 Sum_probs=28.9
Q ss_pred HHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCC--CEEEEEecCC
Q psy13774 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKK--NVFIIGATNR 69 (110)
Q Consensus 10 A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~--~v~vi~ttn~ 69 (110)
.+++.|.+|+||-+..+.... . . ......+..++..+..+.... .|+++.-.|+
T Consensus 350 ~~~~~~~lvVID~l~~l~~~~---~-~--~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r 405 (503)
T 1q57_A 350 RSGLGCDVIILDHISIVVSAS---G-E--SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN 405 (503)
T ss_dssp HHTTCCSEEEEECTTCCCSCC---S-C--CCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHhcCCCEEEEccchhcCCCC---C-C--CCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc
Confidence 345789999999999875321 1 0 123334445555554443333 3444444444
No 230
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=46.42 E-value=11 Score=24.09 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=10.8
Q ss_pred CCeEEEEcccccc
Q psy13774 14 APCVLFFDELDSI 26 (110)
Q Consensus 14 ~P~ii~iDeiD~l 26 (110)
.+.+|+|||+..+
T Consensus 76 ~~dvviIDE~Q~~ 88 (184)
T 2orw_A 76 DTRGVFIDEVQFF 88 (184)
T ss_dssp TEEEEEECCGGGS
T ss_pred CCCEEEEECcccC
Confidence 4679999999865
No 231
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=46.34 E-value=38 Score=19.03 Aligned_cols=20 Identities=10% Similarity=-0.004 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++++......|.+|++|-
T Consensus 36 ~~~a~~~l~~~~~dlii~D~ 55 (127)
T 3i42_A 36 GTDALHAMSTRGYDAVFIDL 55 (127)
T ss_dssp HHHHHHHHHHSCCSEEEEES
T ss_pred HHHHHHHHHhcCCCEEEEeC
Confidence 35667778888899999984
No 232
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=46.24 E-value=43 Score=22.02 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=39.8
Q ss_pred HHHHHHHHhc----CCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccC
Q psy13774 4 ATGASMARAA----APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILR 79 (110)
Q Consensus 4 ~~~F~~A~~~----~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r 79 (110)
+..++.|++. ...+|++||+=....-.-- .. .+++..+.. ...+.-||.|+|.+ +++++.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l-------~~----~ev~~~l~~--Rp~~~~vIlTGr~a---p~~l~e 169 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYL-------PL----EEVISALNA--RPGHQTVIITGRGC---HRDILD 169 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSS-------CH----HHHHHHHHT--SCTTCEEEEECSSC---CHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCC-------CH----HHHHHHHHh--CcCCCEEEEECCCC---cHHHHH
Confidence 4455666553 3689999999543222110 11 235556654 34567788888875 666665
Q ss_pred CCccceEEEe
Q psy13774 80 PGRLDQLIYI 89 (110)
Q Consensus 80 ~grfd~~i~~ 89 (110)
.-|.+=++
T Consensus 170 --~AD~VTem 177 (196)
T 1g5t_A 170 --LADTVSEL 177 (196)
T ss_dssp --HCSEEEEC
T ss_pred --hCcceeee
Confidence 66655554
No 233
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=45.76 E-value=15 Score=29.11 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=12.3
Q ss_pred HhcCCeEEEEccccc
Q psy13774 11 RAAAPCVLFFDELDS 25 (110)
Q Consensus 11 ~~~~P~ii~iDeiD~ 25 (110)
....+.+|+|||+|.
T Consensus 205 ~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 205 DLSRYSCIILDEAHE 219 (773)
T ss_dssp TCTTEEEEEECSGGG
T ss_pred cccCCCEEEecCccc
Confidence 346689999999995
No 234
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=45.69 E-value=9.9 Score=26.71 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=11.0
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
-++|++||+|.+.
T Consensus 184 ~~~vViDEah~~~ 196 (414)
T 3eiq_A 184 IKMFVLDEADEML 196 (414)
T ss_dssp CCEEEECSHHHHH
T ss_pred CcEEEEECHHHhh
Confidence 4699999999875
No 235
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=45.69 E-value=40 Score=19.14 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.+|++|-
T Consensus 37 ~~a~~~~~~~~~dlvl~D~ 55 (136)
T 1mvo_A 37 EEALKKAETEKPDLIVLDV 55 (136)
T ss_dssp HHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHhhcCCCEEEEec
Confidence 4556666777899999873
No 236
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=45.47 E-value=35 Score=21.46 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++..+....|.+|++|-
T Consensus 41 ~~al~~~~~~~~dlvllD~ 59 (215)
T 1a04_A 41 EQGIELAESLDPDLILLDL 59 (215)
T ss_dssp HHHHHHHHHHCCSEEEEET
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 4566777778899999873
No 237
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=45.24 E-value=32 Score=19.51 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.++++......|.+|++|-
T Consensus 38 ~~a~~~~~~~~~dlvllD~ 56 (130)
T 1dz3_A 38 QDCLQMLEEKRPDILLLDI 56 (130)
T ss_dssp HHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHhcCCCCEEEEec
Confidence 4566777777899999874
No 238
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=45.15 E-value=9.4 Score=26.17 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=11.0
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
-++|++||+|.+.
T Consensus 148 ~~~iIiDEah~~~ 160 (367)
T 1hv8_A 148 VKYFILDEADEML 160 (367)
T ss_dssp CCEEEEETHHHHH
T ss_pred CCEEEEeCchHhh
Confidence 3789999999874
No 239
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=45.11 E-value=40 Score=18.91 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.++.+......|.+|++|-
T Consensus 36 ~~al~~~~~~~~dlii~D~ 54 (120)
T 3f6p_A 36 NEAVEMVEELQPDLILLDI 54 (120)
T ss_dssp HHHHHHHHTTCCSEEEEET
T ss_pred HHHHHHHhhCCCCEEEEeC
Confidence 4567777888899999874
No 240
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=44.94 E-value=14 Score=20.92 Aligned_cols=19 Identities=11% Similarity=0.259 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.++++|-
T Consensus 37 ~~a~~~~~~~~~dlvl~D~ 55 (124)
T 1srr_A 37 LQALDIVTKERPDLVLLDM 55 (124)
T ss_dssp HHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHhccCCCEEEEec
Confidence 4566667777899999874
No 241
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=44.46 E-value=5.1 Score=27.95 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=9.7
Q ss_pred CCeEEEEcccccc
Q psy13774 14 APCVLFFDELDSI 26 (110)
Q Consensus 14 ~P~ii~iDeiD~l 26 (110)
.+.+|+|||++..
T Consensus 214 ~~~lLiiDdig~~ 226 (308)
T 2qgz_A 214 NVPVLILDDIGAE 226 (308)
T ss_dssp TSSEEEEETCCC-
T ss_pred CCCEEEEcCCCCC
Confidence 3569999999754
No 242
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=44.44 E-value=22 Score=24.77 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=10.8
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
-++|++||+|.+.
T Consensus 164 ~~~vIiDEaH~~~ 176 (400)
T 1s2m_A 164 CSLFIMDEADKML 176 (400)
T ss_dssp CCEEEEESHHHHS
T ss_pred CCEEEEeCchHhh
Confidence 3799999999874
No 243
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=44.06 E-value=8.4 Score=25.89 Aligned_cols=14 Identities=36% Similarity=0.366 Sum_probs=11.5
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-.+|+|||+|.+..
T Consensus 202 l~~lViDEah~l~~ 215 (262)
T 3ly5_A 202 LQCLVIDEADRILD 215 (262)
T ss_dssp CCEEEECSHHHHHH
T ss_pred CCEEEEcChHHHhh
Confidence 46899999998764
No 244
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=43.99 E-value=82 Score=22.30 Aligned_cols=12 Identities=25% Similarity=0.110 Sum_probs=10.0
Q ss_pred cCCeEEEEcccc
Q psy13774 13 AAPCVLFFDELD 24 (110)
Q Consensus 13 ~~P~ii~iDeiD 24 (110)
..|.++++||-=
T Consensus 302 ~~p~~lllDEpt 313 (365)
T 3qf7_A 302 GRLDAFFIDEGF 313 (365)
T ss_dssp TTCCEEEEESCC
T ss_pred CCCCEEEEeCCC
Confidence 689999999943
No 245
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=43.19 E-value=12 Score=22.31 Aligned_cols=18 Identities=11% Similarity=-0.023 Sum_probs=11.7
Q ss_pred HHHHHHHhcCCeEEEEcc
Q psy13774 5 TGASMARAAAPCVLFFDE 22 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDe 22 (110)
+++.......|.+|++|-
T Consensus 38 ~a~~~l~~~~~dliild~ 55 (155)
T 1qkk_A 38 EALAGLSADFAGIVISDI 55 (155)
T ss_dssp HHHHTCCTTCCSEEEEES
T ss_pred HHHHHHHhCCCCEEEEeC
Confidence 444455566788888874
No 246
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=43.10 E-value=58 Score=20.22 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILR 79 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r 79 (110)
+++.......|.+|++|- + .+.. ..- +++..+.......+++++.+....+.+..++..
T Consensus 39 ~al~~~~~~~~dlvl~D~-~--lp~~---------~g~----~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~ 97 (208)
T 1yio_A 39 TFLEHRRPEQHGCLVLDM-R--MPGM---------SGI----ELQEQLTAISDGIPIVFITAHGDIPMTVRAMKA 97 (208)
T ss_dssp HHHHHCCTTSCEEEEEES-C--CSSS---------CHH----HHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHT
T ss_pred HHHHhhhccCCCEEEEeC-C--CCCC---------CHH----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHC
Confidence 445555567788888863 1 1111 111 244444443344566666555555555555543
No 247
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=42.55 E-value=22 Score=20.96 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCC-eEEEEcc
Q psy13774 4 ATGASMARAAAP-CVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P-~ii~iDe 22 (110)
.+++.......| .+|++|-
T Consensus 37 ~~a~~~l~~~~~~dlvi~D~ 56 (151)
T 3kcn_A 37 PEALACIKKSDPFSVIMVDM 56 (151)
T ss_dssp HHHHHHHHHSCCCSEEEEES
T ss_pred HHHHHHHHcCCCCCEEEEeC
Confidence 456677777776 8999874
No 248
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=42.44 E-value=32 Score=26.09 Aligned_cols=20 Identities=10% Similarity=-0.008 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCeEEEEccc
Q psy13774 4 ATGASMARAAAPCVLFFDEL 23 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDei 23 (110)
+-+++.|-...|.|+++||=
T Consensus 393 Rv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp HHHHHHHHHSCCSEEEEEST
T ss_pred HHHHHHHHHcCCCEEEEeCC
Confidence 34567788899999999993
No 249
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=42.28 E-value=30 Score=19.90 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=13.7
Q ss_pred HHHHHHHHh-----cCCeEEEEcc
Q psy13774 4 ATGASMARA-----AAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~-----~~P~ii~iDe 22 (110)
.++.+.... ..|.+|++|-
T Consensus 45 ~~a~~~l~~~~~~~~~~dlvi~D~ 68 (146)
T 3ilh_A 45 NAAINKLNELYAAGRWPSIICIDI 68 (146)
T ss_dssp HHHHHHHHHHHTSSCCCSEEEEES
T ss_pred HHHHHHHHHhhccCCCCCEEEEcC
Confidence 455666666 7899999874
No 250
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=41.80 E-value=15 Score=25.91 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=11.1
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
..+|++||+|.+.
T Consensus 180 ~~~vViDEah~~~ 192 (410)
T 2j0s_A 180 IKMLVLDEADEML 192 (410)
T ss_dssp CCEEEEETHHHHT
T ss_pred eeEEEEccHHHHH
Confidence 5789999999875
No 251
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=41.64 E-value=47 Score=18.74 Aligned_cols=20 Identities=40% Similarity=0.316 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..+++.......|.+|++|-
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~ 55 (133)
T 3nhm_A 36 GASGLQQALAHPPDVLISDV 55 (133)
T ss_dssp HHHHHHHHHHSCCSEEEECS
T ss_pred HHHHHHHHhcCCCCEEEEeC
Confidence 35677788888999999984
No 252
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=41.32 E-value=61 Score=24.15 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=34.2
Q ss_pred HHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 7 ASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 7 F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
.......+|.+|+|||.-++.+.- ..+......+..++..+.. .++-+|.+|++.+.++
T Consensus 131 ~~~LS~g~~~~lilDe~t~~~~~~-----~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~~~~ 189 (525)
T 1tf7_A 131 NYAIQKYRARRVSIDSVTSVFQQY-----DASSVVRRELFRLVARLKQ----IGATTVMTTERIEEYG 189 (525)
T ss_dssp HHHHHHHTCSEEEEECSTTTSTTT-----CCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSSSSS
T ss_pred HHHHHHcCCCEEEECCHHHHHHhc-----CCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCCCcc
Confidence 334445679999999998765431 1011233344445544432 2456777888877753
No 253
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=41.07 E-value=29 Score=23.37 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=28.9
Q ss_pred HHHHHHhcCCe-------EEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 6 GASMARAAAPC-------VLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 6 ~F~~A~~~~P~-------ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
.+..|-...|. ++++||--+=+ +......+..++..+. .. +..+|.+|++.+.
T Consensus 136 ~lAraL~~~p~~~~~~~~lllLDEPts~L----------D~~~~~~l~~~l~~l~---~~-g~tviivtHd~~~ 195 (249)
T 2qi9_C 136 RLAAVVLQITPQANPAGQLLLLDEPMNSL----------DVAQQSALDKILSALS---QQ-GLAIVMSSHDLNH 195 (249)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSTTTTC----------CHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHH
T ss_pred HHHHHHHcCCCcCCCCCeEEEEECCcccC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHH
Confidence 45556667788 99999954221 1123334444444442 22 3456677777553
No 254
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=40.94 E-value=27 Score=24.20 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=11.3
Q ss_pred CCeEEEEccccccc
Q psy13774 14 APCVLFFDELDSIA 27 (110)
Q Consensus 14 ~P~ii~iDeiD~l~ 27 (110)
..++|++||+|.+.
T Consensus 152 ~~~~vViDEaH~~~ 165 (391)
T 1xti_A 152 HIKHFILDECDKML 165 (391)
T ss_dssp TCSEEEECSHHHHT
T ss_pred ccCEEEEeCHHHHh
Confidence 34689999999884
No 255
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=40.60 E-value=51 Score=18.83 Aligned_cols=19 Identities=5% Similarity=-0.040 Sum_probs=12.7
Q ss_pred HHHHHHHHh-cCCeEEEEcc
Q psy13774 4 ATGASMARA-AAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~-~~P~ii~iDe 22 (110)
.+++..... ..|.+|++|-
T Consensus 49 ~~al~~l~~~~~~dlvilD~ 68 (138)
T 2b4a_A 49 SAFFQHRSQLSTCDLLIVSD 68 (138)
T ss_dssp HHHHHTGGGGGSCSEEEEET
T ss_pred HHHHHHHHhCCCCCEEEEeC
Confidence 345555566 7788888874
No 256
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=40.41 E-value=36 Score=26.23 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=11.4
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-++|+|||+|.+..
T Consensus 139 ~~~vIiDE~H~l~~ 152 (702)
T 2p6r_A 139 VSCLVVDEIHLLDS 152 (702)
T ss_dssp CCEEEETTGGGGGC
T ss_pred cCEEEEeeeeecCC
Confidence 46999999998853
No 257
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=40.41 E-value=50 Score=18.74 Aligned_cols=19 Identities=5% Similarity=-0.088 Sum_probs=12.5
Q ss_pred HHHHHHHHhcC-CeEEEEcc
Q psy13774 4 ATGASMARAAA-PCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~-P~ii~iDe 22 (110)
.+++....... |.+|++|-
T Consensus 41 ~~a~~~~~~~~~~dlvi~D~ 60 (136)
T 3hdv_A 41 EEARLYLHYQKRIGLMITDL 60 (136)
T ss_dssp HHHHHHHHHCTTEEEEEECS
T ss_pred HHHHHHHHhCCCCcEEEEec
Confidence 34555555666 88998874
No 258
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=40.22 E-value=48 Score=18.38 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.++++|-
T Consensus 36 ~~~~~~~~~~~~dlvi~d~ 54 (122)
T 1zgz_A 36 AGLREIMQNQSVDLILLDI 54 (122)
T ss_dssp HHHHHHHHHSCCSEEEEES
T ss_pred HHHHHHHhcCCCCEEEEeC
Confidence 3455666777899998863
No 259
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=40.00 E-value=18 Score=25.04 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=11.7
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-.+|++||+|.+..
T Consensus 146 ~~~iIiDEah~~~~ 159 (395)
T 3pey_A 146 IKIFVLDEADNMLD 159 (395)
T ss_dssp CCEEEEETHHHHHH
T ss_pred CCEEEEEChhhhcC
Confidence 57999999998864
No 260
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=39.91 E-value=44 Score=18.88 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=12.5
Q ss_pred HHHHHHHHh-------cCCeEEEEcc
Q psy13774 4 ATGASMARA-------AAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~-------~~P~ii~iDe 22 (110)
.++.+.... ..|.+|++|-
T Consensus 38 ~~a~~~l~~~~~~~~~~~~dlvi~d~ 63 (140)
T 1k68_A 38 MEAMAYLRQEGEYANASRPDLILLXL 63 (140)
T ss_dssp HHHHHHHTTCGGGGSCCCCSEEEECS
T ss_pred HHHHHHHHcccccccCCCCcEEEEec
Confidence 345555555 6788998873
No 261
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=39.27 E-value=24 Score=23.53 Aligned_cols=23 Identities=13% Similarity=0.031 Sum_probs=17.0
Q ss_pred HHHHHHHHh----cCCeEEEEcccccc
Q psy13774 4 ATGASMARA----AAPCVLFFDELDSI 26 (110)
Q Consensus 4 ~~~F~~A~~----~~P~ii~iDeiD~l 26 (110)
.++++.++. ..|.+|+|||+..+
T Consensus 75 ~~i~~~i~~~~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 75 PEILNYIMSNSFNDETKVIGIDEVQFF 101 (223)
T ss_dssp HHHHHHHHSTTSCTTCCEEEECSGGGS
T ss_pred HHHHHHHHHHhhCCCCCEEEEecCccC
Confidence 456666665 34889999999865
No 262
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=38.59 E-value=67 Score=23.24 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=11.1
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
-.+|+|||+|.+.
T Consensus 128 ~~~vViDEah~~~ 140 (555)
T 3tbk_A 128 FTLMIFDECHNTS 140 (555)
T ss_dssp CSEEEETTGGGCS
T ss_pred CCEEEEECccccC
Confidence 4689999999985
No 263
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=38.48 E-value=39 Score=19.36 Aligned_cols=16 Identities=6% Similarity=0.079 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCCeEEE
Q psy13774 4 ATGASMARAAAPCVLF 19 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~ 19 (110)
.++........|.+|+
T Consensus 52 ~~al~~l~~~~~dlvi 67 (137)
T 2pln_A 52 EDGEYLMDIRNYDLVM 67 (137)
T ss_dssp HHHHHHHHHSCCSEEE
T ss_pred HHHHHHHHcCCCCEEE
Confidence 4556666777787777
No 264
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=38.21 E-value=57 Score=18.70 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.+|++|-
T Consensus 45 ~~al~~l~~~~~dlvi~d~ 63 (143)
T 2qv0_A 45 LDVLKFLQHNKVDAIFLDI 63 (143)
T ss_dssp HHHHHHHHHCCCSEEEECS
T ss_pred HHHHHHHHhCCCCEEEEec
Confidence 4566677778899999874
No 265
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=36.73 E-value=35 Score=19.08 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=7.7
Q ss_pred HHHhcCCeEEEEc
Q psy13774 9 MARAAAPCVLFFD 21 (110)
Q Consensus 9 ~A~~~~P~ii~iD 21 (110)
......|.+|++|
T Consensus 41 ~~~~~~~dlvi~D 53 (127)
T 2jba_A 41 QLNEPWPDLILLA 53 (127)
T ss_dssp TCSSSCCSEEEEE
T ss_pred HHhccCCCEEEEe
Confidence 3344567777765
No 266
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=36.28 E-value=20 Score=24.99 Aligned_cols=14 Identities=29% Similarity=0.339 Sum_probs=11.6
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-++|++||+|.+..
T Consensus 169 ~~~iViDEah~~~~ 182 (412)
T 3fht_A 169 IKVFVLDEADVMIA 182 (412)
T ss_dssp CCEEEEETHHHHHS
T ss_pred CcEEEEeCHHHHhh
Confidence 56899999998863
No 267
>3szy_A Phosphonoacetate hydrolase; alkaline phosphatase superfamily; 1.35A {Sinorhizobium meliloti} SCOP: c.76.1.0 PDB: 3szz_A 3t00_A 3t01_A 3t02_A
Probab=35.90 E-value=34 Score=25.09 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=18.1
Q ss_pred HHHhcCCeEEEEcccccccccCC
Q psy13774 9 MARAAAPCVLFFDELDSIAKSRG 31 (110)
Q Consensus 9 ~A~~~~P~ii~iDeiD~l~~~r~ 31 (110)
..+...|.++++.++|.....-+
T Consensus 199 ~~~~~~p~l~y~~~~D~~gH~~G 221 (427)
T 3szy_A 199 LLREFRPDIMYLTTTDYVQHKYA 221 (427)
T ss_dssp HHHHTCCSEEEEECCCHHHHHCC
T ss_pred HHHhcCCCEEEEcccchhhccCC
Confidence 34678899999999998776544
No 268
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=35.65 E-value=21 Score=23.92 Aligned_cols=27 Identities=22% Similarity=0.132 Sum_probs=15.7
Q ss_pred EEEEEecCCCC---CCCccccCCCccceEEEec
Q psy13774 61 VFIIGATNRPD---IIDPAILRPGRLDQLIYIP 90 (110)
Q Consensus 61 v~vi~ttn~~~---~ld~al~r~grfd~~i~~~ 90 (110)
.-+|.|||..= ..-+.+.+ |+ ..+.++
T Consensus 148 ~PlIITtN~~~~~~~~~~~L~S--Ri-~~f~F~ 177 (212)
T 1tue_A 148 PPILLTTNIHPAKDNRWPYLES--RI-TVFEFP 177 (212)
T ss_dssp CCEEEEESSCTTSSSSCHHHHT--SC-EEEECC
T ss_pred CCEEEecCCCcccccchhhhhh--hE-EEEEcC
Confidence 46778999742 22245666 66 345554
No 269
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=35.62 E-value=63 Score=18.45 Aligned_cols=10 Identities=30% Similarity=0.663 Sum_probs=8.1
Q ss_pred cCCeEEEEcc
Q psy13774 13 AAPCVLFFDE 22 (110)
Q Consensus 13 ~~P~ii~iDe 22 (110)
..|.+|++|-
T Consensus 61 ~~~dlvi~D~ 70 (149)
T 1k66_A 61 PRPAVILLDL 70 (149)
T ss_dssp CCCSEEEECS
T ss_pred CCCcEEEEEC
Confidence 6788999874
No 270
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=35.56 E-value=1.2e+02 Score=23.41 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 5 TGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
-....|-...|.|+++||-=+-+ +.... ..+...+..+... +.-||..|++.+.+
T Consensus 230 v~iAraL~~~p~llllDEPts~L----------D~~~~---~~l~~~l~~l~~~-g~tvi~vtHdl~~~ 284 (608)
T 3j16_B 230 FAIGMSCVQEADVYMFDEPSSYL----------DVKQR---LNAAQIIRSLLAP-TKYVICVEHDLSVL 284 (608)
T ss_dssp HHHHHHHHSCCSEEEEECTTTTC----------CHHHH---HHHHHHHHGGGTT-TCEEEEECSCHHHH
T ss_pred HHHHHHHHhCCCEEEEECcccCC----------CHHHH---HHHHHHHHHHHhC-CCEEEEEeCCHHHH
Confidence 34566777899999999943221 11222 2334444444333 33566677766544
No 271
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=35.48 E-value=14 Score=25.67 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=12.0
Q ss_pred CCeEEEEcccccccc
Q psy13774 14 APCVLFFDELDSIAK 28 (110)
Q Consensus 14 ~P~ii~iDeiD~l~~ 28 (110)
..++|++||+|.+..
T Consensus 162 ~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 162 KIKMFILDEADEMLS 176 (394)
T ss_dssp TCCEEEEETHHHHHH
T ss_pred hCcEEEEEChHHhhC
Confidence 357999999998753
No 272
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=35.33 E-value=80 Score=23.86 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=15.1
Q ss_pred HHHHHHhcCCeEEEEcccc
Q psy13774 6 GASMARAAAPCVLFFDELD 24 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD 24 (110)
+..+|-...|.|+++||--
T Consensus 490 ~iAral~~~p~illlDEpt 508 (582)
T 3b60_A 490 AIARALLRDSPILILDEAT 508 (582)
T ss_dssp HHHHHHHHCCSEEEEETTT
T ss_pred HHHHHHHhCCCEEEEECcc
Confidence 4566667889999999965
No 273
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=34.76 E-value=61 Score=24.93 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-++..|-...|.++++||-=
T Consensus 236 RvaIAraL~~~P~lLlLDEPT 256 (607)
T 3bk7_A 236 RVAIAAALLRKAHFYFFDEPS 256 (607)
T ss_dssp HHHHHHHHHSCCSEEEEECTT
T ss_pred HHHHHHHHhcCCCEEEEECCc
Confidence 345667778999999999943
No 274
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=34.65 E-value=1.3e+02 Score=22.70 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=14.9
Q ss_pred HHHHHHhcCCeEEEEcccc
Q psy13774 6 GASMARAAAPCVLFFDELD 24 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD 24 (110)
+.++|-...|.|+++||.=
T Consensus 487 ~lAral~~~p~illlDEpt 505 (578)
T 4a82_A 487 SIARIFLNNPPILILDEAT 505 (578)
T ss_dssp HHHHHHHHCCSEEEEESTT
T ss_pred HHHHHHHcCCCEEEEECcc
Confidence 4566667889999999954
No 275
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=34.43 E-value=90 Score=19.90 Aligned_cols=43 Identities=9% Similarity=0.300 Sum_probs=32.9
Q ss_pred CCEEEEEecCCCCCCCccccCCCccceEEEecC---CCHHHHHHHHHHHhh
Q psy13774 59 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL---PDEIWLILSDKFLYK 106 (110)
Q Consensus 59 ~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~---P~~~~R~~~~~~~~~ 106 (110)
+-++|||. ++.++++++. |.|..+-++. |-.=.|..+++.++|
T Consensus 96 ~i~FvIGG---a~Gl~~~v~~--rAd~~lSlS~mTfpHqL~RliL~EQiYR 141 (163)
T 1o6d_A 96 DITILIGG---PYGLNEEIFA--KAHRVFSLSKMTFTHGMTVLIVLEQIFR 141 (163)
T ss_dssp CEEEEECC---TTCCCGGGGG--GCSEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEC---CCCCCHHHHH--hhCceEEccCCCCcHHHHHHHHHHHHHH
Confidence 34466665 7899999999 9999999854 667778877777665
No 276
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=34.02 E-value=18 Score=24.43 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=11.3
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-.+|++||+|.+..
T Consensus 130 ~~~iViDEah~~~~ 143 (337)
T 2z0m_A 130 FEIVIIDEADLMFE 143 (337)
T ss_dssp CSEEEEESHHHHHH
T ss_pred CcEEEEEChHHhhc
Confidence 36899999998853
No 277
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=33.60 E-value=66 Score=24.25 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCeEEEEccc
Q psy13774 4 ATGASMARAAAPCVLFFDEL 23 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDei 23 (110)
+-....|-...|.++++||=
T Consensus 166 Rv~iAraL~~~P~lLlLDEP 185 (538)
T 1yqt_A 166 RVAIAAALLRNATFYFFDEP 185 (538)
T ss_dssp HHHHHHHHHSCCSEEEEEST
T ss_pred HHHHHHHHhcCCCEEEEECC
Confidence 34566777899999999994
No 278
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=33.21 E-value=29 Score=22.88 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=25.3
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCC-CCCCEEEEEecCCC
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-AKKNVFIIGATNRP 70 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~ttn~~ 70 (110)
.+++++||.+.|. ..+++..++.-. .+.+++++..+++-
T Consensus 122 ~s~lIVD~AekLS-----------------~kE~~~Lld~A~~~naqvvll~~~~Rq 161 (189)
T 2l8b_A 122 GSTVIVDQGEKLS-----------------LKETLTLLDGAARHNVQVLITDSGQRT 161 (189)
T ss_dssp CCEEEEEESSSHH-----------------HHHHHHHHHHHHHTTCCEEEEESSTTT
T ss_pred CCEEEEechhhcC-----------------HHHHHHHHHHHHhcCCEEEEeCCcccc
Confidence 4799999998772 334555555432 34688888877543
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=33.07 E-value=32 Score=22.69 Aligned_cols=21 Identities=10% Similarity=-0.062 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-.+..|-...|.++++||--
T Consensus 138 rv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 138 RISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp HHHHHHHHHSCCSEEEEESTT
T ss_pred HHHHHHHHhcCCCEEEEECcc
Confidence 345667778899999999954
No 280
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=32.98 E-value=88 Score=19.36 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCCeEEEEc
Q psy13774 4 ATGASMARAAAPCVLFFD 21 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iD 21 (110)
.+++..+....|.+|++|
T Consensus 48 ~~al~~~~~~~~dlvi~D 65 (205)
T 1s8n_A 48 QEAVELAELHKPDLVIMD 65 (205)
T ss_dssp HHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHhhcCCCEEEEe
Confidence 456677777889999987
No 281
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=32.78 E-value=37 Score=29.63 Aligned_cols=46 Identities=13% Similarity=0.299 Sum_probs=24.1
Q ss_pred CeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEec
Q psy13774 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGAT 67 (110)
Q Consensus 15 P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tt 67 (110)
-..|+|||++.+..+|+ ...+.++..++..+......-+++.+-||
T Consensus 208 v~~vIiDEvH~l~d~RG-------~~lE~~l~rl~~~~~~~~~~~riI~LSAT 253 (1724)
T 4f92_B 208 VRLIILDEIHLLHDDRG-------PVLEALVARAIRNIEMTQEDVRLIGLSAT 253 (1724)
T ss_dssp EEEEEETTGGGGGSTTH-------HHHHHHHHHHHHHHHHHTCCCEEEEEECS
T ss_pred cCEEEEecchhcCCccH-------HHHHHHHHHHHHHHHhCCCCCcEEEEecc
Confidence 36899999997743221 13344444444444443333345544444
No 282
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=32.55 E-value=50 Score=21.65 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..+++..+....|.+|++|-
T Consensus 70 ~~~al~~~~~~~~DlvllD~ 89 (249)
T 3q9s_A 70 AMNGLIKAREDHPDLILLDL 89 (249)
T ss_dssp HHHHHHHHHHSCCSEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEEcC
Confidence 34567777888899999874
No 283
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=32.44 E-value=1.4e+02 Score=21.64 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=14.4
Q ss_pred HHHhcCCeEEEEcccccc
Q psy13774 9 MARAAAPCVLFFDELDSI 26 (110)
Q Consensus 9 ~A~~~~P~ii~iDeiD~l 26 (110)
.++...+.++++||++..
T Consensus 268 slrG~~~~~viiDE~a~~ 285 (385)
T 2o0j_A 268 AVRGNSFAMIYIEDCAFI 285 (385)
T ss_dssp HHHTSCCSEEEEESGGGS
T ss_pred CccCCCCCEEEechhhhc
Confidence 346677889999999976
No 284
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=32.42 E-value=32 Score=25.47 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=11.7
Q ss_pred CCeEEEEccccccc
Q psy13774 14 APCVLFFDELDSIA 27 (110)
Q Consensus 14 ~P~ii~iDeiD~l~ 27 (110)
.-.+|+|||+|.+.
T Consensus 226 ~~~~lViDEah~l~ 239 (563)
T 3i5x_A 226 FVDYKVLDEADRLL 239 (563)
T ss_dssp TCCEEEEETHHHHT
T ss_pred cceEEEEeCHHHHh
Confidence 35789999999886
No 285
>3lmb_A Uncharacterized protein; protein OLEI01261, unknown function, chlorobaculum tepidum T structural genomics, PSI2, MCSG; HET: MSE; 2.10A {Oleispira antarctica rb-8} SCOP: d.38.1.0
Probab=32.32 E-value=64 Score=20.42 Aligned_cols=32 Identities=16% Similarity=-0.031 Sum_probs=26.7
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHHhhc
Q psy13774 76 AILRPGRLDQLIYIPLPDEIWLILSDKFLYKR 107 (110)
Q Consensus 76 al~r~grfd~~i~~~~P~~~~R~~~~~~~~~~ 107 (110)
.+++|++=+....+.+|+.++-..+...+.++
T Consensus 94 ~yl~P~~~~~~a~~~~~~~~~~~~i~~~l~~~ 125 (165)
T 3lmb_A 94 KYIAPVYGRIRAICHAPDEEELANFFDHFERK 125 (165)
T ss_dssp EECSCCCSCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred EEccCccCCeEEEEEeCcHHHHHHHHHHHHhC
Confidence 58899999999999999988888777766543
No 286
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=32.24 E-value=55 Score=24.00 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=28.9
Q ss_pred HHhcCCe--EEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecC
Q psy13774 10 ARAAAPC--VLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68 (110)
Q Consensus 10 A~~~~P~--ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn 68 (110)
.+++.|. +|+||-+..+..... . ......+..+...+..+....++.||+++.
T Consensus 304 ~~~~~~~~~lIVID~Lq~~~~~~~--~----~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 358 (444)
T 3bgw_A 304 KRKNPGKRVIVMIDYLQLLEPAKA--N----DSRTNQISQISRDLKKMARELDVVVIALSQ 358 (444)
T ss_dssp HHHSCSSCEEEEEECSTTSBCSCS--S----SCHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHhCCCCeEEEEecHHhccCCCC--C----CCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 3456788 999999998864321 1 122334455555555443344445555443
No 287
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=31.56 E-value=31 Score=25.03 Aligned_cols=14 Identities=29% Similarity=0.339 Sum_probs=11.5
Q ss_pred CCeEEEEccccccc
Q psy13774 14 APCVLFFDELDSIA 27 (110)
Q Consensus 14 ~P~ii~iDeiD~l~ 27 (110)
.-.+|+|||+|.+.
T Consensus 235 ~~~~iViDEah~~~ 248 (479)
T 3fmp_B 235 KIKVFVLDEADVMI 248 (479)
T ss_dssp GCCEEEECCHHHHH
T ss_pred cCCEEEEECHHHHh
Confidence 34689999999886
No 288
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=31.55 E-value=17 Score=21.04 Aligned_cols=17 Identities=0% Similarity=-0.111 Sum_probs=10.2
Q ss_pred HHHHHHhcCCeEEEEcc
Q psy13774 6 GASMARAAAPCVLFFDE 22 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDe 22 (110)
++.......|.+|++|-
T Consensus 42 a~~~l~~~~~dlvi~D~ 58 (136)
T 3kto_A 42 FMRQQISDDAIGMIIEA 58 (136)
T ss_dssp HTTSCCCTTEEEEEEET
T ss_pred HHHHHhccCCCEEEEeC
Confidence 33444456678888763
No 289
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=31.35 E-value=80 Score=23.86 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=15.1
Q ss_pred HHHHHHhcCCeEEEEcccc
Q psy13774 6 GASMARAAAPCVLFFDELD 24 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD 24 (110)
+..+|-...|.|+++||--
T Consensus 490 ~iAral~~~p~illlDEpt 508 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEAT 508 (582)
T ss_pred HHHHHHHcCCCEEEEECcc
Confidence 4566677889999999965
No 290
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=31.15 E-value=58 Score=25.05 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCeEEEEccc
Q psy13774 5 TGASMARAAAPCVLFFDEL 23 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDei 23 (110)
-++..|-...|.++++||=
T Consensus 480 v~iAraL~~~p~lLlLDEP 498 (607)
T 3bk7_A 480 VAIAATLLRDADIYLLDEP 498 (607)
T ss_dssp HHHHHHHTSCCSEEEEECT
T ss_pred HHHHHHHHhCCCEEEEeCC
Confidence 4566777889999999994
No 291
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=30.71 E-value=31 Score=22.98 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCeEEEEccccc
Q psy13774 5 TGASMARAAAPCVLFFDELDS 25 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD~ 25 (110)
-.+..|-...|.++++||--+
T Consensus 148 v~lAral~~~p~lllLDEPts 168 (243)
T 1mv5_A 148 LAIARAFLRNPKILMLDEATA 168 (243)
T ss_dssp HHHHHHHHHCCSEEEEECCSC
T ss_pred HHHHHHHhcCCCEEEEECCcc
Confidence 356677788999999999653
No 292
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=30.19 E-value=1.3e+02 Score=22.74 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=15.1
Q ss_pred HHHHHHhcCCeEEEEcccc
Q psy13774 6 GASMARAAAPCVLFFDELD 24 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD 24 (110)
....|-...|.|+++||==
T Consensus 148 ~iA~aL~~~p~illlDEPt 166 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPS 166 (538)
T ss_dssp HHHHHHHSCCSEEEEESTT
T ss_pred HHHHHHHcCCCEEEEECCc
Confidence 4566777899999999944
No 293
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=30.14 E-value=49 Score=28.90 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=10.8
Q ss_pred eEEEEcccccccc
Q psy13774 16 CVLFFDELDSIAK 28 (110)
Q Consensus 16 ~ii~iDeiD~l~~ 28 (110)
..|++||+|.+..
T Consensus 1048 ~lvViDE~H~l~d 1060 (1724)
T 4f92_B 1048 NLFVVDEVHLIGG 1060 (1724)
T ss_dssp SEEEECCGGGGGS
T ss_pred eEEEeechhhcCC
Confidence 6899999998853
No 294
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=29.91 E-value=16 Score=20.48 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=10.1
Q ss_pred HHHHHHhcCCeEEEEcc
Q psy13774 6 GASMARAAAPCVLFFDE 22 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDe 22 (110)
++.......|.++++|-
T Consensus 39 ~~~~~~~~~~dlvi~d~ 55 (124)
T 1dc7_A 39 VLAALASKTPDVLLSDI 55 (124)
T ss_dssp HHHHSSSCCCSCEEECS
T ss_pred HHHHHhcCCCCEEEEee
Confidence 34444556677777763
No 295
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=29.86 E-value=34 Score=24.02 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=19.1
Q ss_pred cHHHHHHHHHhcCCeEEEEccccc
Q psy13774 2 RIATGASMARAAAPCVLFFDELDS 25 (110)
Q Consensus 2 ~l~~~F~~A~~~~P~ii~iDeiD~ 25 (110)
+.+.....|-...|.+|++||.-.
T Consensus 228 ~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 228 TSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CHHHHHHHHTTSCCSEEEECCCCS
T ss_pred hHHHHHHHHhhhCCCEEEEcCCCh
Confidence 445677788889999999999763
No 296
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=29.76 E-value=1.1e+02 Score=19.49 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCCccccCCCcc
Q psy13774 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRL 83 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld~al~r~grf 83 (110)
.+++..+....|.+|++|-- .+.. ..- +++..+.... ..+++++.+....+.+-.++.. |-.
T Consensus 39 ~~al~~l~~~~~dlvilD~~---l~~~---------~g~----~~~~~lr~~~-~~~ii~lt~~~~~~~~~~~~~~-Ga~ 100 (238)
T 2gwr_A 39 TQALTAVRELRPDLVLLDLM---LPGM---------NGI----DVCRVLRADS-GVPIVMLTAKTDTVDVVLGLES-GAD 100 (238)
T ss_dssp GGHHHHHHHHCCSEEEEESS---CSSS---------CHH----HHHHHHHTTC-CCCEEEEEETTCCSCHHHHHHT-TCC
T ss_pred HHHHHHHHhCCCCEEEEeCC---CCCC---------CHH----HHHHHHHhCC-CCcEEEEeCCCCHHHHHHHHHC-CCC
Confidence 34566667778888888741 1110 111 2344444332 4567766666665555555544 443
Q ss_pred c
Q psy13774 84 D 84 (110)
Q Consensus 84 d 84 (110)
+
T Consensus 101 ~ 101 (238)
T 2gwr_A 101 D 101 (238)
T ss_dssp E
T ss_pred E
Confidence 3
No 297
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=29.35 E-value=36 Score=25.51 Aligned_cols=15 Identities=20% Similarity=0.095 Sum_probs=12.1
Q ss_pred cCCeEEEEccccccc
Q psy13774 13 AAPCVLFFDELDSIA 27 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~ 27 (110)
..-.+|+|||+|.+.
T Consensus 174 ~~~~~lViDEah~l~ 188 (579)
T 3sqw_A 174 RFVDYKVLDEADRLL 188 (579)
T ss_dssp TTCCEEEEETHHHHT
T ss_pred ccCCEEEEEChHHhh
Confidence 345789999999986
No 298
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=29.25 E-value=86 Score=20.55 Aligned_cols=19 Identities=5% Similarity=0.004 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.++.+.+....|.+|++|-
T Consensus 163 ~eal~~l~~~~~dlvl~D~ 181 (254)
T 2ayx_A 163 VDALNVLSKNHIDIVLSDV 181 (254)
T ss_dssp HHHHHHHHHSCCSEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEcC
Confidence 4566777788899999873
No 299
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=29.20 E-value=38 Score=22.88 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCeEEEEccc
Q psy13774 3 IATGASMARAAAPCVLFFDEL 23 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDei 23 (110)
++.....|-.+.|.+|++||.
T Consensus 87 l~~~la~aL~~~p~illlDEp 107 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEM 107 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCC
T ss_pred HHHHHHHHHhhCCCEEEeCCC
Confidence 355667777789999999997
No 300
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=28.99 E-value=1.1e+02 Score=19.25 Aligned_cols=43 Identities=23% Similarity=0.408 Sum_probs=32.8
Q ss_pred CCEEEEEecCCCCCCCccccCCCccceEEEecC---CCHHHHHHHHHHHhh
Q psy13774 59 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL---PDEIWLILSDKFLYK 106 (110)
Q Consensus 59 ~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~---P~~~~R~~~~~~~~~ 106 (110)
+-+++||. ++.++++++. |.|..+-++. |-.=.|..+++.++|
T Consensus 97 ~i~FvIGG---~~Gl~~~v~~--rA~~~lSlS~mT~pHql~RliL~EQiYR 142 (155)
T 1ns5_A 97 DVSLLIGG---PEGLSPACKA--AAEQSWSLSALTLPHPLVRVLVAESLYR 142 (155)
T ss_dssp CEEEEECB---TTBCCHHHHH--HCSEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEC---CCCCCHHHHH--hhCceEEccCCCCcHHHHHHHHHHHHHH
Confidence 34566665 6889999999 9999998854 667778877776665
No 301
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=28.98 E-value=51 Score=23.09 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=11.7
Q ss_pred CCeEEEEccccccc
Q psy13774 14 APCVLFFDELDSIA 27 (110)
Q Consensus 14 ~P~ii~iDeiD~l~ 27 (110)
..++|++||+|.+.
T Consensus 125 ~~~~vIiDEaH~~~ 138 (494)
T 1wp9_A 125 DVSLIVFDEAHRAV 138 (494)
T ss_dssp SCSEEEEETGGGCS
T ss_pred hceEEEEECCcccC
Confidence 45799999999885
No 302
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=28.89 E-value=70 Score=20.43 Aligned_cols=43 Identities=19% Similarity=0.404 Sum_probs=32.9
Q ss_pred CCEEEEEecCCCCCCCccccCCCccceEEEecC---CCHHHHHHHHHHHhh
Q psy13774 59 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL---PDEIWLILSDKFLYK 106 (110)
Q Consensus 59 ~~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~---P~~~~R~~~~~~~~~ 106 (110)
+=++|||. ++.++++++. |.|..+-++. |-.=.|..+++.++|
T Consensus 106 ~i~FvIGG---~~Gl~~~v~~--rA~~~lSlS~mTfpHqL~RliL~EQlYR 151 (163)
T 4fak_A 106 DFVFVIGG---SNGLHKDVLQ--RSNYALSFSKMTFPHQMMRVVLIEQVYR 151 (163)
T ss_dssp EEEEEECB---TTBCCHHHHH--HCSEEEESCSSCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEC---CCccCHHHHH--hcCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 34566665 6899999999 9999999854 667778877776665
No 303
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=28.70 E-value=61 Score=21.26 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.9
Q ss_pred CCeEEEEccccccc
Q psy13774 14 APCVLFFDELDSIA 27 (110)
Q Consensus 14 ~P~ii~iDeiD~l~ 27 (110)
...+|+|||++.+.
T Consensus 192 ~~~llIiDEaH~l~ 205 (237)
T 2fz4_A 192 RFMLLIFDEVHHLP 205 (237)
T ss_dssp TCSEEEEECSSCCC
T ss_pred cCCEEEEECCccCC
Confidence 46899999999884
No 304
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=28.45 E-value=1.7e+02 Score=23.40 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=28.0
Q ss_pred HhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 11 RAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 11 ~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
....|++|++||.-.= .+ ......+...++..+.. ..+..++.+|+..+..
T Consensus 683 ~a~~psLlLLDEp~~G------td---~~d~~~i~~~ll~~l~~---~~g~~vl~~TH~~el~ 733 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRG------TS---TYDGLSLAWACAENLAN---KIKALTLFATHYFELT 733 (800)
T ss_dssp HCCTTEEEEEESCCCC------SS---SSHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGG
T ss_pred hccCCCEEEEECCCCC------CC---hhHHHHHHHHHHHHHHh---ccCCeEEEEeCCHHHH
Confidence 3578999999997411 01 11222333344444432 2355777888887543
No 305
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=28.29 E-value=38 Score=25.22 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=28.3
Q ss_pred HHHHHhcCC--eEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 7 ASMARAAAP--CVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 7 F~~A~~~~P--~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
+..|-...| .++++||.++=+. ......+..++..+.. +.-||.+|+.++
T Consensus 408 la~~l~~~~~~~~lilDEp~~gld----------~~~~~~i~~~l~~~~~-----~~~vi~itH~~~ 459 (517)
T 4ad8_A 408 LAVSTVLGADTPSVVFDEVDAGIG----------GAAAIAVAEQLSRLAD-----TRQVLVVTHLAQ 459 (517)
T ss_dssp HHHHHHHCCCSSEEEECSCSSSCC----------THHHHHHHHHHHHHHH-----HSEEEEECCCHH
T ss_pred HHHHHHhCCCCCEEEEeCCcCCCC----------HHHHHHHHHHHHHHhC-----CCEEEEEecCHH
Confidence 344556678 9999999884321 1233344444444432 235667777654
No 306
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=28.22 E-value=95 Score=25.36 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=27.1
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
...|++|++||.=.= .+......+...++..+.. ..+..++.+|+..+.
T Consensus 739 a~~~sLlLLDEp~~G---------lD~~~~~~i~~~il~~l~~---~~g~~vl~aTH~~el 787 (934)
T 3thx_A 739 ATKDSLIIIDELGRG---------TSTYDGFGLAWAISEYIAT---KIGAFCMFATHFHEL 787 (934)
T ss_dssp CCTTCEEEEESCSCS---------SCHHHHHHHHHHHHHHHHH---TTCCEEEEEESCGGG
T ss_pred ccCCcEEEEeCCCCC---------CCHHHHHHHHHHHHHHHHh---cCCCEEEEEcCcHHH
Confidence 578999999996421 1100122333455555532 234567778887653
No 307
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=28.18 E-value=51 Score=18.83 Aligned_cols=20 Identities=10% Similarity=-0.017 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++++......|.+|++|-
T Consensus 39 ~~~a~~~l~~~~~dlvi~d~ 58 (140)
T 3grc_A 39 AAQALEQVARRPYAAMTVDL 58 (140)
T ss_dssp HHHHHHHHHHSCCSEEEECS
T ss_pred HHHHHHHHHhCCCCEEEEeC
Confidence 35677788888999999874
No 308
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=28.16 E-value=41 Score=24.00 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCeEEEEcccc
Q psy13774 3 IATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD 24 (110)
+..+...|-.+.|.+|++||.-
T Consensus 185 ~~~~La~aL~~~PdvillDEp~ 206 (356)
T 3jvv_A 185 FSEALRSALREDPDIILVGEMR 206 (356)
T ss_dssp HHHHHHHHTTSCCSEEEESCCC
T ss_pred HHHHHHHHhhhCcCEEecCCCC
Confidence 3456777888999999999983
No 309
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=27.89 E-value=97 Score=25.28 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=28.3
Q ss_pred hcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCCC
Q psy13774 12 AAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIID 74 (110)
Q Consensus 12 ~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ld 74 (110)
...|++|++||.-.= .+......+...++..+.. ..+..++.+|++.+...
T Consensus 750 a~~p~LlLLDEP~~G---------lD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 750 ATSQSLVILDELGRG---------TSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp CCTTCEEEEESTTTT---------SCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGGG
T ss_pred ccCCCEEEEeCCCCC---------CCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHHH
Confidence 578999999996421 1110122333355555432 23456778888765443
No 310
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=27.86 E-value=35 Score=21.27 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCeEEEEcccc
Q psy13774 3 IATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD 24 (110)
+..+.+..++..|.||.+-|++
T Consensus 23 ~~~i~~~i~~~~pDIi~LQEv~ 44 (250)
T 4f1h_A 23 ARGLCSYLALYTPDVVFLQELI 44 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEeCC
Confidence 4556677788899999999985
No 311
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=27.48 E-value=49 Score=25.54 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCeEEEEcc
Q psy13774 5 TGASMARAAAPCVLFFDE 22 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDe 22 (110)
-+++.|-...|.|+++||
T Consensus 476 v~iAraL~~~p~lLlLDE 493 (608)
T 3j16_B 476 VAIVLALGIPADIYLIDE 493 (608)
T ss_dssp HHHHHHTTSCCSEEEECC
T ss_pred HHHHHHHHhCCCEEEEEC
Confidence 356667788899999999
No 312
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=27.48 E-value=53 Score=18.88 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++++......|.+|++|-
T Consensus 37 ~~~al~~~~~~~~dlvl~D~ 56 (136)
T 3t6k_A 37 GEEALQQIYKNLPDALICDV 56 (136)
T ss_dssp HHHHHHHHHHSCCSEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEeC
Confidence 35667778888999999873
No 313
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=27.17 E-value=45 Score=22.30 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=10.5
Q ss_pred eEEEEccccccc
Q psy13774 16 CVLFFDELDSIA 27 (110)
Q Consensus 16 ~ii~iDeiD~l~ 27 (110)
.+|++||+|.+.
T Consensus 227 ~~vIiDEaH~~~ 238 (282)
T 1rif_A 227 GMMMNDECHLAT 238 (282)
T ss_dssp EEEEEETGGGCC
T ss_pred CEEEEECCccCC
Confidence 689999999884
No 314
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=27.03 E-value=93 Score=17.71 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.+|++|-
T Consensus 37 ~~al~~l~~~~~dlvi~D~ 55 (138)
T 3c3m_A 37 EECLEALNATPPDLVLLDI 55 (138)
T ss_dssp HHHHHHHHHSCCSEEEEES
T ss_pred HHHHHHHhccCCCEEEEeC
Confidence 4566677778899999874
No 315
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=26.95 E-value=39 Score=18.73 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=12.4
Q ss_pred ccCCCccceEEEecCCCHHH--HH-HHHHHHhhcc
Q psy13774 77 ILRPGRLDQLIYIPLPDEIW--LI-LSDKFLYKRK 108 (110)
Q Consensus 77 l~r~grfd~~i~~~~P~~~~--R~-~~~~~~~~~~ 108 (110)
+.| -++..|.+.-|+.++ |+ .|++.-+.+.
T Consensus 6 ikr--gv~lki~ir~pnke~inrevsilrh~yqke 38 (89)
T 2kj1_A 6 IKR--GVNMKIRIKGPNKETINREVSILRHSYQKE 38 (89)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred hhc--cCceEEEecCCCHHHHhHHHHHHHHHHHHH
Confidence 445 678899999999887 54 6777655543
No 316
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=26.92 E-value=81 Score=26.02 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=28.3
Q ss_pred HHHHhcCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCC
Q psy13774 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDI 72 (110)
Q Consensus 8 ~~A~~~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~ 72 (110)
..+....|++|++||.-.=. + ..........++..+.. ..+..+|.+|+..+.
T Consensus 862 al~la~~~sLlLLDEp~~Gt--------d-~~dg~~~~~~il~~L~~---~~g~~vl~~TH~~el 914 (1022)
T 2o8b_B 862 ILMHATAHSLVLVDELGRGT--------A-TFDGTAIANAVVKELAE---TIKCRTLFSTHYHSL 914 (1022)
T ss_dssp HHHHCCTTCEEEEECTTTTS--------C-HHHHHHHHHHHHHHHHH---TSCCEEEEECCCHHH
T ss_pred HHHhCCCCcEEEEECCCCCC--------C-hHHHHHHHHHHHHHHHh---cCCCEEEEEeCCHHH
Confidence 34556789999999974211 0 00112333444444432 234567777777543
No 317
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=26.79 E-value=46 Score=18.72 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCeEEEEcc
Q psy13774 3 IATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDe 22 (110)
..++++......|.+|++|-
T Consensus 35 ~~~al~~l~~~~~dlvllD~ 54 (122)
T 3gl9_A 35 GQIALEKLSEFTPDLIVLXI 54 (122)
T ss_dssp HHHHHHHHTTBCCSEEEECS
T ss_pred HHHHHHHHHhcCCCEEEEec
Confidence 34667777888899999873
No 318
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=26.79 E-value=85 Score=24.96 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=10.7
Q ss_pred hcCCeEEEEccc
Q psy13774 12 AAAPCVLFFDEL 23 (110)
Q Consensus 12 ~~~P~ii~iDei 23 (110)
...|+++++||.
T Consensus 653 a~~p~LlLLDEp 664 (765)
T 1ewq_A 653 ATENSLVLLDEV 664 (765)
T ss_dssp CCTTEEEEEEST
T ss_pred ccCCCEEEEECC
Confidence 568999999996
No 319
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=26.09 E-value=1.5e+02 Score=20.02 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCeEEEEc
Q psy13774 4 ATGASMARAAAPCVLFFD 21 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iD 21 (110)
.++.+.+....|.+|++|
T Consensus 195 ~eAl~~~~~~~~dlvl~D 212 (286)
T 3n0r_A 195 GEALEAVTRRTPGLVLAD 212 (286)
T ss_dssp HHHHHHHHHCCCSEEEEE
T ss_pred HHHHHHHHhCCCCEEEEc
Confidence 456777888899999987
No 320
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=25.93 E-value=37 Score=25.06 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=11.3
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
-++|+|||+|.+.
T Consensus 260 ~~lIIiDEaH~~~ 272 (508)
T 3fho_A 260 IKVFVLDEADNML 272 (508)
T ss_dssp CCEEEECCHHHHT
T ss_pred CCEEEEechhhhc
Confidence 5799999999885
No 321
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=25.81 E-value=53 Score=19.55 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCeEEEEc
Q psy13774 3 IATGASMARAAAPCVLFFD 21 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iD 21 (110)
-.++.+.++.+.|.+|++|
T Consensus 42 g~eAl~~~~~~~~DlvllD 60 (123)
T 2lpm_A 42 MQEALDIARKGQFDIAIID 60 (123)
T ss_dssp HHHHHHHHHHCCSSEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEe
Confidence 3567888889999999986
No 322
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=25.41 E-value=89 Score=22.69 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=10.9
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
-.+|+|||+|.+.
T Consensus 226 ~~liIiDE~H~~~ 238 (510)
T 2oca_A 226 FGMMMNDECHLAT 238 (510)
T ss_dssp EEEEEEETGGGCC
T ss_pred CCEEEEECCcCCC
Confidence 4789999999874
No 323
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=25.05 E-value=48 Score=23.60 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCeEEEEcccc
Q psy13774 4 ATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDeiD 24 (110)
+-++..|-...|.++++||==
T Consensus 148 RvalAraL~~~P~lLLLDEP~ 168 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPF 168 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHHHHhCCCEEEEECCc
Confidence 345677778899999999943
No 324
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=25.04 E-value=60 Score=23.03 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=23.6
Q ss_pred EEEEecCCCCC-CCccccCCCccceEEEecCC
Q psy13774 62 FIIGATNRPDI-IDPAILRPGRLDQLIYIPLP 92 (110)
Q Consensus 62 ~vi~ttn~~~~-ld~al~r~grfd~~i~~~~P 92 (110)
+||++|..|.- ++.+.++||. ..|.+..|
T Consensus 248 IVIsAtg~p~~vI~~e~vk~Ga--vVIDVgi~ 277 (320)
T 1edz_A 248 VVITGVPSENYKFPTEYIKEGA--VCINFACT 277 (320)
T ss_dssp EEEECCCCTTCCBCTTTSCTTE--EEEECSSS
T ss_pred EEEECCCCCcceeCHHHcCCCe--EEEEcCCC
Confidence 78888888987 9999999985 46777665
No 325
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=25.01 E-value=56 Score=21.27 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=10.9
Q ss_pred eEEEEcccccccc
Q psy13774 16 CVLFFDELDSIAK 28 (110)
Q Consensus 16 ~ii~iDeiD~l~~ 28 (110)
.+|++||+|.+..
T Consensus 176 ~~lViDEah~~~~ 188 (253)
T 1wrb_A 176 KYIVLDEADRMLD 188 (253)
T ss_dssp CEEEEETHHHHHH
T ss_pred CEEEEeCHHHHHh
Confidence 6899999998863
No 326
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=24.80 E-value=53 Score=22.66 Aligned_cols=20 Identities=10% Similarity=-0.056 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCeEEEEcccc
Q psy13774 5 TGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD 24 (110)
-.+..|-...|.++++||--
T Consensus 168 v~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 168 ISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp HHHHHHHHSCCSEEEEESTT
T ss_pred HHHHHHHHCCCCEEEEECCc
Confidence 45667778899999999955
No 327
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=24.70 E-value=34 Score=21.16 Aligned_cols=67 Identities=10% Similarity=0.179 Sum_probs=33.9
Q ss_pred HHHHHHhcCCeEEEEcccccccccCCCCCC--C-CCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCCCC
Q psy13774 6 GASMARAAAPCVLFFDELDSIAKSRGGSVG--D-GGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73 (110)
Q Consensus 6 ~F~~A~~~~P~ii~iDeiD~l~~~r~~~~~--~-~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~~l 73 (110)
.+..|-...|.++++||--+-+..+..... . ......+....+...+..+... +.-+|.+|++++.+
T Consensus 93 ~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~ 162 (171)
T 4gp7_A 93 EMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEV 162 (171)
T ss_dssp HHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHH
T ss_pred HHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHh
Confidence 345555678999999996655433211110 0 0012222334455555554333 45566667765543
No 328
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=24.45 E-value=1.1e+02 Score=17.68 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=8.6
Q ss_pred hcCCeEEEEcc
Q psy13774 12 AAAPCVLFFDE 22 (110)
Q Consensus 12 ~~~P~ii~iDe 22 (110)
...|.+|++|-
T Consensus 57 ~~~~dliilD~ 67 (152)
T 3heb_A 57 AGRAQLVLLDL 67 (152)
T ss_dssp TTCBEEEEECS
T ss_pred cCCCCEEEEeC
Confidence 56789999874
No 329
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=24.32 E-value=99 Score=22.00 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=27.2
Q ss_pred cCCeEEEEcccccccccCCCCCCCCCCchHHHHHHHHHhhhcCCCCCCEEEEEecCCCC
Q psy13774 13 AAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 71 (110)
Q Consensus 13 ~~P~ii~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ttn~~~ 71 (110)
..+.+|++|| |.+... ..+..+...++-+....++..|.+-|...
T Consensus 99 ~~~~vIiLED-Dl~~sp-------------dF~~y~~~~l~~y~~D~~I~~ISa~n~~g 143 (343)
T 1fo8_A 99 NYPAAVVVED-DLEVAP-------------DFFEYFQATYPLLKADPSLWCVSAWNDNG 143 (343)
T ss_dssp CCSEEEEEET-TEEECT-------------THHHHHHHHHHHHHHCTTEEEEESCCTTC
T ss_pred cCCEEEEEcC-CCeECH-------------HHHHHHHHHHHHhhcCCcEEEEecccCcc
Confidence 5788999988 655321 13333333344333567888888877653
No 330
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=24.08 E-value=52 Score=23.61 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCeEEEEcccc
Q psy13774 5 TGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD 24 (110)
-+...|-...|.++++||==
T Consensus 142 valArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 142 VAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp HHHHHHHTTCCSEEEEESGG
T ss_pred HHHHHHHHcCCCEEEEECcc
Confidence 35667778899999999944
No 331
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=23.75 E-value=1.1e+02 Score=23.52 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=11.4
Q ss_pred CeEEEEcccccccc
Q psy13774 15 PCVLFFDELDSIAK 28 (110)
Q Consensus 15 P~ii~iDeiD~l~~ 28 (110)
-++|+|||+|.+..
T Consensus 139 ~~~vIiDE~H~l~~ 152 (720)
T 2zj8_A 139 VKILVADEIHLIGS 152 (720)
T ss_dssp EEEEEEETGGGGGC
T ss_pred CCEEEEECCcccCC
Confidence 36999999998853
No 332
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=23.68 E-value=46 Score=21.09 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCeEEEEcccc
Q psy13774 3 IATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD 24 (110)
+..+.+..++..|.||.+-|++
T Consensus 29 ~~~i~~~i~~~~pDIi~LQEv~ 50 (256)
T 4gz1_A 29 ARGVCSCLALYSPDVVFLQEVI 50 (256)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEcCC
Confidence 4556677778899999999985
No 333
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=23.48 E-value=1.1e+02 Score=19.58 Aligned_cols=42 Identities=17% Similarity=0.418 Sum_probs=32.3
Q ss_pred CEEEEEecCCCCCCCccccCCCccceEEEecC---CCHHHHHHHHHHHhh
Q psy13774 60 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPL---PDEIWLILSDKFLYK 106 (110)
Q Consensus 60 ~v~vi~ttn~~~~ld~al~r~grfd~~i~~~~---P~~~~R~~~~~~~~~ 106 (110)
-++|||. ++.++++++. |.|..+-++. |-.=.|..+++.++|
T Consensus 103 i~FvIGG---a~Gl~~~v~~--rA~~~lSlS~mTfpHqL~RliL~EQiYR 147 (167)
T 1to0_A 103 VTFVIGG---SLGLSDTVMK--RADEKLSFSKMTFPHQLMRLILVEQIYR 147 (167)
T ss_dssp EEEEECC---SSCCCHHHHH--HCSEEEESCSSCCCHHHHHHHHHHHHHH
T ss_pred EEEEEEC---CCCCCHHHHH--hhCcEEEccCCCCcHHHHHHHHHHHHHH
Confidence 3456655 7899999999 9999999854 667778877777665
No 334
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=22.84 E-value=59 Score=23.58 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCeEEEEcccc
Q psy13774 5 TGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD 24 (110)
-+..+|-...|.++++||-=
T Consensus 164 valARAL~~~P~lLLLDEPt 183 (390)
T 3gd7_A 164 MCLARSVLSKAKILLLDEPS 183 (390)
T ss_dssp HHHHHHHHTTCCEEEEESHH
T ss_pred HHHHHHHhcCCCEEEEeCCc
Confidence 35667778899999999943
No 335
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=22.56 E-value=1.8e+02 Score=21.99 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=11.1
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
-++|+|||+|.+.
T Consensus 137 ~~~vViDEaH~~~ 149 (696)
T 2ykg_A 137 FTLMIFDECHNTS 149 (696)
T ss_dssp CSEEEEETGGGCS
T ss_pred ccEEEEeCCCccc
Confidence 3799999999885
No 336
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=22.45 E-value=13 Score=21.47 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=7.1
Q ss_pred HhcCCeEEEEc
Q psy13774 11 RAAAPCVLFFD 21 (110)
Q Consensus 11 ~~~~P~ii~iD 21 (110)
....|.+|++|
T Consensus 56 ~~~~~dlvi~D 66 (135)
T 3snk_A 56 ADTRPGIVILD 66 (135)
T ss_dssp TTCCCSEEEEE
T ss_pred hccCCCEEEEe
Confidence 44567777766
No 337
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=22.40 E-value=50 Score=20.94 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCeEEEEcccc
Q psy13774 3 IATGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 3 l~~~F~~A~~~~P~ii~iDeiD 24 (110)
...+.+..++..|.||.+-|++
T Consensus 33 ~~~i~~~i~~~~pDIi~LQEv~ 54 (256)
T 4fva_A 33 MKAVAHIVKNVNPDILFLQEVV 54 (256)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEecC
Confidence 4456677788899999999985
No 338
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=22.39 E-value=77 Score=18.24 Aligned_cols=20 Identities=10% Similarity=-0.009 Sum_probs=15.0
Q ss_pred HHHHHHHHHhc-CCeEEEEcc
Q psy13774 3 IATGASMARAA-APCVLFFDE 22 (110)
Q Consensus 3 l~~~F~~A~~~-~P~ii~iDe 22 (110)
..++.+..... .|.+|++|-
T Consensus 48 ~~~al~~l~~~~~~dlvilD~ 68 (145)
T 3kyj_B 48 GQEALDKLAAQPNVDLILLDI 68 (145)
T ss_dssp HHHHHHHHHHCTTCCEEEECT
T ss_pred HHHHHHHHhcCCCCCEEEEeC
Confidence 35667777777 799999873
No 339
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=22.27 E-value=2e+02 Score=20.03 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=19.5
Q ss_pred HHHHHHHHh--cCCeEEEEcccccccccC
Q psy13774 4 ATGASMARA--AAPCVLFFDELDSIAKSR 30 (110)
Q Consensus 4 ~~~F~~A~~--~~P~ii~iDeiD~l~~~r 30 (110)
.+.|..+-. ..+++|+||..|.|+...
T Consensus 137 ~~~f~~~i~~~~~~~vlIldqpdlLLa~t 165 (280)
T 4a8j_C 137 LAKFSAAIQNNPTDTIVIIEQPELLLSLV 165 (280)
T ss_dssp HHHHHHHHHTSTTSEEEEEECGGGHHHHS
T ss_pred HHHHhhhhhccCCCeEEEEcChHHHHHhc
Confidence 455665433 357899999999988765
No 340
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=21.82 E-value=1.4e+02 Score=22.90 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=10.9
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
-++|+|||+|.+.
T Consensus 146 ~~~vIiDE~H~l~ 158 (715)
T 2va8_A 146 VNYFVLDELHYLN 158 (715)
T ss_dssp EEEEEECSGGGGG
T ss_pred cCEEEEechhhcC
Confidence 3699999999874
No 341
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=21.77 E-value=83 Score=22.56 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=11.0
Q ss_pred CeEEEEccccccc
Q psy13774 15 PCVLFFDELDSIA 27 (110)
Q Consensus 15 P~ii~iDeiD~l~ 27 (110)
-..|++||+|.+.
T Consensus 204 ~~~lVlDEah~~~ 216 (434)
T 2db3_A 204 TRFVVLDEADRML 216 (434)
T ss_dssp CCEEEEETHHHHT
T ss_pred CCeEEEccHhhhh
Confidence 4689999999885
No 342
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=21.74 E-value=55 Score=22.85 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCeEEEEcccc
Q psy13774 5 TGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD 24 (110)
-++++|-...|.|+++||-=
T Consensus 199 vaiARAL~~~p~iLlLDEPt 218 (306)
T 3nh6_A 199 VAIARTILKAPGIILLDEAT 218 (306)
T ss_dssp HHHHHHHHHCCSEEEEECCS
T ss_pred HHHHHHHHhCCCEEEEECCc
Confidence 35566777889999999954
No 343
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=20.67 E-value=77 Score=18.36 Aligned_cols=19 Identities=5% Similarity=-0.132 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.++.+......|.+|++|-
T Consensus 48 ~~al~~~~~~~~dlvl~D~ 66 (143)
T 3m6m_D 48 EQVLDAMAEEDYDAVIVDL 66 (143)
T ss_dssp HHHHHHHHHSCCSEEEEES
T ss_pred HHHHHHHhcCCCCEEEEeC
Confidence 4566777788999999873
No 344
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=20.64 E-value=87 Score=17.86 Aligned_cols=19 Identities=11% Similarity=-0.004 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++..+....|.+|++|-
T Consensus 44 ~~al~~l~~~~~dlvllD~ 62 (140)
T 3c97_A 44 LQALQAYQNRQFDVIIMDI 62 (140)
T ss_dssp HHHHHHHHHSCCSEEEECT
T ss_pred HHHHHHHhcCCCCEEEEeC
Confidence 4566677778899999874
No 345
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=20.45 E-value=91 Score=17.14 Aligned_cols=19 Identities=11% Similarity=0.013 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.++++|-
T Consensus 37 ~~a~~~~~~~~~dlvi~D~ 55 (123)
T 1xhf_A 37 AEMHQILSEYDINLVIMDI 55 (123)
T ss_dssp HHHHHHHHHSCCSEEEECS
T ss_pred HHHHHHHhcCCCCEEEEcC
Confidence 4566677778899999874
No 346
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=20.36 E-value=67 Score=17.71 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.+++.......|.+|++|-
T Consensus 35 ~~a~~~~~~~~~dlvi~D~ 53 (124)
T 1mb3_A 35 LSALSIARENKPDLILMDI 53 (124)
T ss_dssp HHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHhcCCCCEEEEeC
Confidence 4556667778899999874
No 347
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.29 E-value=76 Score=16.99 Aligned_cols=19 Identities=16% Similarity=0.178 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCCeEEEEcc
Q psy13774 4 ATGASMARAAAPCVLFFDE 22 (110)
Q Consensus 4 ~~~F~~A~~~~P~ii~iDe 22 (110)
.++........|.++++|-
T Consensus 35 ~~~~~~l~~~~~dlii~d~ 53 (119)
T 2j48_A 35 STALDQLDLLQPIVILMAW 53 (119)
T ss_dssp HHHHHHHHHHCCSEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEec
Confidence 4556666777899999874
No 348
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=20.01 E-value=2.5e+02 Score=21.21 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCeEEEEcccc
Q psy13774 5 TGASMARAAAPCVLFFDELD 24 (110)
Q Consensus 5 ~~F~~A~~~~P~ii~iDeiD 24 (110)
-+.++|-...|.|+++||.=
T Consensus 488 v~lARal~~~p~illlDEpt 507 (587)
T 3qf4_A 488 LSIARALVKKPKVLILDDCT 507 (587)
T ss_dssp HHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHHHHcCCCEEEEECCc
Confidence 34566777899999999955
Done!