RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13774
(110 letters)
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 123 bits (311), Expect = 3e-34
Identities = 49/85 (57%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Query: 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR 69
AR AAP ++FFDE+D+IA +RG DR++NQ+LTEMDG+ NV +I ATNR
Sbjct: 542 ARQAAPAIIFFDEIDAIAPARGARFDTS--VTDRIVNQLLTEMDGIQELSNVVVIAATNR 599
Query: 70 PDIIDPAILRPGRLDQLIYIPLPDE 94
PDI+DPA+LRPGR D+LI +P PDE
Sbjct: 600 PDILDPALLRPGRFDRLILVPPPDE 624
Score = 83.0 bits (205), Expect = 5e-20
Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR 69
A AP ++F DE+D+IA R G+ RV+ Q+LT MDG+ + V +IGATNR
Sbjct: 267 AEENAPSIIFIDEIDAIAPKREEVTGE---VEKRVVAQLLTLMDGLKGRGRVIVIGATNR 323
Query: 70 PDIIDPAILRPGRLDQLIYIPLPDE 94
PD +DPA+ RPGR D+ I I +PD+
Sbjct: 324 PDALDPALRRPGRFDREIVIRVPDK 348
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 115 bits (290), Expect = 1e-31
Identities = 46/87 (52%), Positives = 61/87 (70%), Gaps = 3/87 (3%)
Query: 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGAT 67
AR AP ++F DE+DS+A RG S G+ RV+ Q+LTE+DG+ + V +I AT
Sbjct: 329 EKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIAAT 385
Query: 68 NRPDIIDPAILRPGRLDQLIYIPLPDE 94
NRPD +DPA+LRPGR D+LIY+PLPD
Sbjct: 386 NRPDDLDPALLRPGRFDRLIYVPLPDL 412
Score = 68.7 bits (168), Expect = 6e-15
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR 69
A AP ++F DE+D++A R D G RV+ Q+L MDG+ + V +IGATNR
Sbjct: 72 AEKLAPSIIFIDEIDALAPKRSS---DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNR 127
Query: 70 PDIIDPAILRPGRLDQLIYIPLPDE 94
PD +DPA RPGR D+ I + LPDE
Sbjct: 128 PDGLDPAKRRPGRFDREIEVNLPDE 152
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 110 bits (278), Expect = 2e-30
Identities = 47/90 (52%), Positives = 60/90 (66%), Gaps = 8/90 (8%)
Query: 9 MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVIN----QILTEMDGMGAKKNVFII 64
+AR AP ++F DE+D+IA R D G + DR + Q+L EMDG + NV II
Sbjct: 219 LAREKAPSIIFIDEIDAIAAKRT----DSGTSGDREVQRTLMQLLAEMDGFDPRGNVKII 274
Query: 65 GATNRPDIIDPAILRPGRLDQLIYIPLPDE 94
ATNR DI+DPAILRPGR D++I +PLPDE
Sbjct: 275 AATNRIDILDPAILRPGRFDRIIEVPLPDE 304
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 111 bits (279), Expect = 2e-30
Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 8/90 (8%)
Query: 9 MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVIN----QILTEMDGMGAKKNVFII 64
+AR AP ++F DE+D+I R D G + DR + ++L ++DG + NV +I
Sbjct: 239 LAREKAPSIIFIDEIDAIGAKRF----DSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294
Query: 65 GATNRPDIIDPAILRPGRLDQLIYIPLPDE 94
ATNRPDI+DPA+LRPGR D+ I PLPDE
Sbjct: 295 MATNRPDILDPALLRPGRFDRKIEFPLPDE 324
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 109 bits (274), Expect = 2e-29
Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 7/100 (7%)
Query: 1 MRIATGAS-------MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMD 53
M + GAS A+ APC++F DE+D++ + RG +G G ++ +NQ+L EMD
Sbjct: 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD 186
Query: 54 GMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93
G G V +I ATNRPD++DPA+LRPGR D+ + + LPD
Sbjct: 187 GFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD 226
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 107 bits (269), Expect = 1e-28
Identities = 41/84 (48%), Positives = 60/84 (71%)
Query: 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR 69
A+ APC++F DE+D++ + RG +G G ++ +NQ+L EMDG G + V +I ATNR
Sbjct: 238 AKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNR 297
Query: 70 PDIIDPAILRPGRLDQLIYIPLPD 93
PD++DPA+LRPGR D+ I + LPD
Sbjct: 298 PDVLDPALLRPGRFDRQILVELPD 321
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family. Many
proteins may score above the trusted cutoff because an
internal.
Length = 364
Score = 101 bits (254), Expect = 4e-27
Identities = 42/86 (48%), Positives = 58/86 (67%)
Query: 9 MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68
+A+ AP ++F DE+D+IA R S G R + Q+L E+DG + NV +I ATN
Sbjct: 210 LAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATN 269
Query: 69 RPDIIDPAILRPGRLDQLIYIPLPDE 94
RPDI+DPA+LRPGR D++I +PLPD
Sbjct: 270 RPDILDPALLRPGRFDRIIEVPLPDF 295
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 103 bits (258), Expect = 5e-27
Identities = 40/84 (47%), Positives = 58/84 (69%)
Query: 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR 69
A+ +PC++F DE+D++ + RG +G G ++ +NQ+LTEMDG K V +I ATNR
Sbjct: 271 AKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNR 330
Query: 70 PDIIDPAILRPGRLDQLIYIPLPD 93
DI+D A+LRPGR D+ I + LPD
Sbjct: 331 VDILDAALLRPGRFDRQITVSLPD 354
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 93.8 bits (234), Expect = 4e-26
Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 5/91 (5%)
Query: 2 RIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKK-N 60
R+ A+ APCV+F DE+D++A SRG G + RV+NQ+LTE+DG +
Sbjct: 45 RLRELFEAAKKLAPCVIFIDEIDALAGSRGSG---GDSESRRVVNQLLTELDGFTSSLSK 101
Query: 61 VFIIGATNRPDIIDPAILRPGRLDQLIYIPL 91
V +I ATNRPD +DPA+LR GR D++I PL
Sbjct: 102 VIVIAATNRPDKLDPALLR-GRFDRIIEFPL 131
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 99.3 bits (247), Expect = 1e-25
Identities = 43/100 (43%), Positives = 65/100 (65%), Gaps = 7/100 (7%)
Query: 1 MRIATGAS-------MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMD 53
M + GAS A+ AAPC++F DE+D++ + RG +G G ++ +NQ+L EMD
Sbjct: 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 283
Query: 54 GMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93
G + + +I ATNRPD++DPA+LRPGR D+ + + LPD
Sbjct: 284 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
protein; Provisional.
Length = 398
Score = 91.0 bits (226), Expect = 6e-23
Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 9 MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTE----MDGMGAKKNVFII 64
+AR AP ++F DE+DSIA R D ADR + +IL E MDG NV +I
Sbjct: 233 LARENAPSIIFIDEVDSIATKRF----DAQTGADREVQRILLELLNQMDGFDQTTNVKVI 288
Query: 65 GATNRPDIIDPAILRPGRLDQLIYIPLPD 93
ATNR D +DPA+LRPGRLD+ I PLPD
Sbjct: 289 MATNRADTLDPALLRPGRLDRKIEFPLPD 317
>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as
shown for Mycobacterium tuberculosis, some proteins are
modified by ligation between an epsilon-amino group of a
lysine side chain and the C-terminal carboxylate of the
ubiquitin-like protein Pup. This modification leads to
protein degradation by the archaeal-like proteasome
found in the Actinobacteria. Members of this protein
family belong to the AAA family of ATPases and tend to
be clustered with the genes for Pup, the Pup ligase
PafA, and structural components of the proteasome. This
protein forms hexameric rings with ATPase activity
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 512
Score = 89.4 bits (222), Expect = 3e-22
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 12/91 (13%)
Query: 10 ARAAA----PCVLFFDELDSIAKSRGGSVGDGGGAAD---RVINQILTEMDGMGAKKNVF 62
AR A P ++FFDE+DS+ ++RG V ++D V+ Q+L E+DG+ + NV
Sbjct: 281 AREKASEGRPVIVFFDEMDSLFRTRGSGV-----SSDVETTVVPQLLAEIDGVESLDNVI 335
Query: 63 IIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93
+IGA+NR D+IDPAILRPGRLD I I PD
Sbjct: 336 VIGASNREDMIDPAILRPGRLDVKIRIERPD 366
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 74.0 bits (182), Expect = 8e-17
Identities = 33/86 (38%), Positives = 54/86 (62%)
Query: 9 MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68
+A AP ++F DE+D+I R + G R + ++L ++DG ++ +V +I ATN
Sbjct: 271 VAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATN 330
Query: 69 RPDIIDPAILRPGRLDQLIYIPLPDE 94
R + +DPA++RPGR+D+ I P PDE
Sbjct: 331 RIESLDPALIRPGRIDRKIEFPNPDE 356
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 72.2 bits (177), Expect = 3e-16
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 14/90 (15%)
Query: 10 ARAAAPCVLFFDELDSIAKSRG-----GSVGDGGGAADRVINQILTEMDGMGAKKNVFII 64
AR AAPC++F DELD+IA R G V + ++N +LTE+DG+ + V I
Sbjct: 206 ARKAAPCIVFIDELDAIALDRRYQELRGDVSE-------IVNALLTELDGIKENEGVVTI 258
Query: 65 GATNRPDIIDPAILRPGRLDQLIYIPLPDE 94
ATNRP+++DPAI R ++ I LP++
Sbjct: 259 AATNRPELLDPAI--RSRFEEEIEFKLPND 286
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 56.0 bits (135), Expect = 3e-11
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 9 MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68
+A A P VLF DE+DS+ GA + ++ + T D ++NV +IGATN
Sbjct: 79 LAEKAKPGVLFIDEIDSL----------SRGAQNALLRVLETLNDLRIDRENVRVIGATN 128
Query: 69 RPDIIDPAILRPGRLDQLIYIPL 91
RP + D RLD I IPL
Sbjct: 129 RPLLGDLDRALYDRLDIRIVIPL 151
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 50.0 bits (120), Expect = 2e-08
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGAT 67
+A A +PC+L+ DE+D A S S GD G RV+ +T + K VF++
Sbjct: 312 RIAEALSPCILWIDEIDK-AFSNSESKGDSGTTN-RVLATFITWLSE--KKSPVFVVATA 367
Query: 68 NRPDIIDPAILRPGRLDQLIYIPLPDE 94
N D++ ILR GR D++ ++ LP
Sbjct: 368 NNIDLLPLEILRKGRFDEIFFLDLPSL 394
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 45.4 bits (107), Expect = 3e-07
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 1 MRIATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKN 60
+R+ ++AR P VL DE+ S+ + A ++ + L + + ++KN
Sbjct: 65 LRLRLALALARKLKPDVLILDEITSLLDAEQ--------EALLLLLEELRLLLLLKSEKN 116
Query: 61 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93
+ +I TN + PA+LR R D+ I + L
Sbjct: 117 LTVILTTNDEKDLGPALLRR-RFDRRIVLLLIL 148
>gnl|CDD|214396 CHL00206, ycf2, Ycf2; Provisional.
Length = 2281
Score = 36.0 bits (83), Expect = 0.002
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 59 KNVFIIGATNRPDIIDPAILRPGRLDQLIYI 89
+N+ +I +T+ P +DPA++ P +L+ I I
Sbjct: 1771 RNILVIASTHIPQKVDPALIAPNKLNTCIKI 1801
>gnl|CDD|215852 pfam00311, PEPcase, Phosphoenolpyruvate carboxylase.
Length = 794
Score = 27.1 bits (61), Expect = 1.9
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 30 RGGSVGDGGGAADRVI 45
RGGSVG GGG A I
Sbjct: 485 RGGSVGRGGGPAYEAI 500
>gnl|CDD|225227 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production
and conversion].
Length = 910
Score = 26.9 bits (60), Expect = 2.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 30 RGGSVGDGGGAADRVI 45
RGGSVG GGG A I
Sbjct: 605 RGGSVGRGGGPAYAAI 620
>gnl|CDD|211322 cd00497, PseudoU_synth_TruA_like, Pseudouridine synthase, TruA
family. This group consists of eukaryotic, bacterial
and archeal pseudouridine synthases similar to
Escherichia coli TruA, Saccharomyces cerevisiae Pus1p,
S. cerevisiae Pus3p Caenorhabditis elegans Pus1p and
human PUS1. Pseudouridine synthases catalyze the
isomerization of specific uridines in an RNA molecule
to pseudouridines (5-ribosyluracil, psi). No cofactors
are required. S. cerevisiae PUS1 catalyzes the
formation of psi34 and psi36 in the intron containing
tRNAIle, psi35 in the intron containing tRNATyr, psi27
and/or psi28 in several yeast cytoplasmic tRNAs and,
psi44 in U2 small nuclear RNA (U2 snRNA). The presence
of the intron is required for the formation of psi 34,
35 and 36. In addition S. cerevisiae PUS1 makes psi 26,
65 and 67. C. elegans Pus1p does not modify psi44 in
U2 snRNA. S. cerevisiae Pus3p makes psi38 and psi39 in
tRNAs. Psi44 in U2 snRNA and, psi38 and psi39 in tRNAs
are highly phylogenetically conserved. Psi
26,27,28,34,35,36,65 and 67 in tRNAs are less highly
conserved. Mouse Pus1p regulates nuclear receptor
activity through pseudouridylation of Steroid Receptor
RNA Activator. Missense mutation in human PUS1 causes
mitochondrial myopathy and sideroblastic anemia
(MLASA).
Length = 215
Score = 26.2 bits (58), Expect = 3.1
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 7/41 (17%)
Query: 63 IIGATNRPDIIDPAILRPGRLD-------QLIYIPLPDEIW 96
+I A + I I R D Q++ I +
Sbjct: 24 LIIALLKAGNIPYFIKAAARTDRGVSALGQVVAIETERRLT 64
>gnl|CDD|213969 TIGR04356, grasp_GAK, ATP-grasp enzyme, GAK system. Members of
this family are ATP-grasp family enzymes related to a
number of characterized glutamate ligases, including
the ribosomal protein S6 modification enzyme RimK. This
group belongs to a conserved gene neighborhood that
also features an HPr kinase-related protein (see
TIGR04355). We assign this system the initial
designation GAK, for Grasp (this ATP-grasp family
enzyme), Amphipathic (for the member of family
TIGR04354, designated Amphi-Trp), and Kinase, for the
HPr-kinase homolog TIGR04355.
Length = 287
Score = 26.5 bits (59), Expect = 3.2
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 46 NQILTEMDGMGAKKNVFIIGATNRPDIID 74
Q L+E+DG+ KK IGA PD++D
Sbjct: 48 GQDLSELDGLIIKK----IGAVYSPDLLD 72
>gnl|CDD|234570 PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.
Length = 911
Score = 26.3 bits (59), Expect = 3.8
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 30 RGGSVGDGGGAA 41
RGG+VG GGG A
Sbjct: 608 RGGTVGRGGGPA 619
>gnl|CDD|202699 pfam03603, DNA_III_psi, DNA polymerase III psi subunit.
Length = 126
Score = 25.3 bits (56), Expect = 6.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 79 RPGRLDQLIYIPLPDEIWLIL 99
RP L + I LP+ I L+L
Sbjct: 19 RPEVLQGEVAISLPEHIRLLL 39
>gnl|CDD|204979 pfam12611, DUF3766, Protein of unknown function (DUF3766). This
domain family is found in bacteria, and is
approximately 20 amino acids in length. There is a
conserved FTNID sequence motif. There is a single
completely conserved residue T that may be functionally
important.
Length = 24
Score = 23.2 bits (51), Expect = 7.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 8/31 (25%)
Query: 48 ILTEMDGMGAKKNVFIIGATNRPDIIDPAIL 78
++T MD K+NVF TN ID A++
Sbjct: 2 VITAMDREELKENVF----TN----IDSAVI 24
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.143 0.420
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,070,615
Number of extensions: 556125
Number of successful extensions: 584
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 51
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)