RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13774
(110 letters)
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 181 bits (461), Expect = 1e-58
Identities = 79/85 (92%), Positives = 82/85 (96%)
Query: 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR 69
AR AAPCVLFFDELDSIAK+RGG++GDGGGAADRVINQILTEMDGM KKNVFIIGATNR
Sbjct: 104 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 163
Query: 70 PDIIDPAILRPGRLDQLIYIPLPDE 94
PDIIDPAILRPGRLDQLIYIPLPDE
Sbjct: 164 PDIIDPAILRPGRLDQLIYIPLPDE 188
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 173 bits (442), Expect = 4e-56
Identities = 48/85 (56%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR 69
A+ +APCV+FFDE+D++ R GA+ RV+NQ+LTEMDG+ A++ VFI+ ATNR
Sbjct: 99 AKNSAPCVIFFDEVDALCPRRSD---RETGASVRVVNQLLTEMDGLEARQQVFIMAATNR 155
Query: 70 PDIIDPAILRPGRLDQLIYIPLPDE 94
PDIIDPAILRPGRLD+ +++ LP
Sbjct: 156 PDIIDPAILRPGRLDKTLFVGLPPP 180
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 168 bits (428), Expect = 2e-50
Identities = 79/85 (92%), Positives = 82/85 (96%)
Query: 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR 69
AR AAPCVLFFDELDSIAK+RGG++GDGGGAADRVINQILTEMDGM KKNVFIIGATNR
Sbjct: 566 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 625
Query: 70 PDIIDPAILRPGRLDQLIYIPLPDE 94
PDIIDPAILRPGRLDQLIYIPLPDE
Sbjct: 626 PDIIDPAILRPGRLDQLIYIPLPDE 650
Score = 106 bits (265), Expect = 3e-28
Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR 69
A AP ++F DELD+IA R + G+ R+++Q+LT MDG+ + +V ++ ATNR
Sbjct: 293 AEKNAPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGLKQRAHVIVMAATNR 349
Query: 70 PDIIDPAILRPGRLDQLIYIPLPDE 94
P+ IDPA+ R GR D+ + I +PD
Sbjct: 350 PNSIDPALRRFGRFDREVDIGIPDA 374
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 129 bits (327), Expect = 3e-38
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
Query: 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-AKKNVFIIGA 66
+MAR P ++F D++D++ +RG A+ R+ ++L +M+G+G + V ++GA
Sbjct: 104 AMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGA 160
Query: 67 TNRPDIIDPAILRPGRLDQLIYIPLPDE 94
TN P +D AI R R ++ IYIPLPD
Sbjct: 161 TNIPWQLDSAIRR--RFERRIYIPLPDL 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 128 bits (323), Expect = 8e-38
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA-KKNVFIIGA 66
+AR P ++F DE+DS+ SR + AA R+ + L +M G+G + ++GA
Sbjct: 99 QLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGA 155
Query: 67 TNRPDIIDPAILRPGRLDQLIYIPLPDE 94
TN P ++D AI R R ++ IYIPLP+
Sbjct: 156 TNIPWVLDSAIRR--RFEKRIYIPLPEP 181
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 126 bits (318), Expect = 8e-37
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
Query: 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMG-AKKNVFIIGA 66
+MAR P ++F D++D++ +RG A+ R+ ++L +M+G+G + V ++GA
Sbjct: 137 AMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGA 193
Query: 67 TNRPDIIDPAILRPGRLDQLIYIPLPDE 94
TN P +D AI R R ++ IYIPLPD
Sbjct: 194 TNIPWQLDSAIRR--RFERRIYIPLPDL 219
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 122 bits (309), Expect = 5e-36
Identities = 45/86 (52%), Positives = 61/86 (70%)
Query: 9 MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68
+A+ AP ++F DE+D+IA R ++ G R + Q+L EMDG A+ +V IIGATN
Sbjct: 105 LAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164
Query: 69 RPDIIDPAILRPGRLDQLIYIPLPDE 94
RPDI+DPAILRPGR D++I +P PDE
Sbjct: 165 RPDILDPAILRPGRFDRIIEVPAPDE 190
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 125 bits (314), Expect = 1e-35
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA-KKNVFIIGA 66
+AR P ++F DE+DS+ SR + AA R+ + L +M G+G + ++GA
Sbjct: 221 QLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGA 277
Query: 67 TNRPDIIDPAILRPGRLDQLIYIPLPDE 94
TN P ++D AI R R ++ IYIPLP+
Sbjct: 278 TNIPWVLDSAIRR--RFEKRIYIPLPEA 303
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 120 bits (303), Expect = 4e-35
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 7 ASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQIL---------TEMDGMGA 57
A + R C LF ++LD+ A GG+ ++++N L ++ GM
Sbjct: 92 AEIIRKGNMCCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYN 149
Query: 58 K---KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEIWLILSDKFL 104
K V II N + ++R GR+++ + P ++ + + F
Sbjct: 150 KQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFR 199
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 116 bits (292), Expect = 3e-32
Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNR 69
A AP ++F DELD+IA R + G+ R+++Q+LT MDG+ + +V ++ ATNR
Sbjct: 293 AEKNAPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGLKQRAHVIVMAATNR 349
Query: 70 PDIIDPAILRPGRLDQLIYIPLPDE 94
P+ IDPA+ R GR D+ + I +PD
Sbjct: 350 PNSIDPALRRFGRFDREVDIGIPDA 374
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 111 bits (281), Expect = 5e-32
Identities = 40/102 (39%), Positives = 63/102 (61%), Gaps = 10/102 (9%)
Query: 1 MRIATGAS-------MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADR--VINQILTE 51
+ GA+ ARA APC+++ DE+D++ K R ++ G + +NQ+L E
Sbjct: 78 VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMS-GFSNTEEEQTLNQLLVE 136
Query: 52 MDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93
MDGMG +V ++ +TNR DI+D A++RPGRLD+ ++I LP
Sbjct: 137 MDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 106 bits (267), Expect = 5e-30
Identities = 43/100 (43%), Positives = 65/100 (65%), Gaps = 7/100 (7%)
Query: 1 MRIATGAS-------MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMD 53
M + GAS A+ AAPC++F DE+D++ + RG +G G ++ +NQ+L EMD
Sbjct: 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 143
Query: 54 GMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93
G + + +I ATNRPD++DPA+LRPGR D+ + + LPD
Sbjct: 144 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 183
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 106 bits (266), Expect = 7e-30
Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 7/100 (7%)
Query: 1 MRIATGAS-------MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMD 53
M + GA+ A+ APC++F DE+D++ + RG VG G ++ +NQ+L EMD
Sbjct: 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 147
Query: 54 GMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93
G + ++ ATNRPDI+DPA+LRPGR D+ I I PD
Sbjct: 148 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 187
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 105 bits (265), Expect = 1e-29
Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 7/100 (7%)
Query: 1 MRIATGAS-------MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMD 53
M + GA+ A+ APC++F DE+D++ + RG VG G ++ +NQ+L EMD
Sbjct: 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 171
Query: 54 GMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93
G + ++ ATNRPDI+DPA+LRPGR D+ I I PD
Sbjct: 172 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 108 bits (271), Expect = 3e-29
Identities = 43/86 (50%), Positives = 62/86 (72%), Gaps = 4/86 (4%)
Query: 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADR--VINQILTEMDGMGAKKNVFIIGAT 67
A+A APC++F DE+D++ + RG G GGG +R +NQ+L EMDG +K+ + ++ AT
Sbjct: 104 AKAHAPCIVFIDEIDAVGRHRG--AGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161
Query: 68 NRPDIIDPAILRPGRLDQLIYIPLPD 93
NRPDI+DPA+LRPGR D+ I + PD
Sbjct: 162 NRPDILDPALLRPGRFDKKIVVDPPD 187
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 104 bits (261), Expect = 5e-29
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 11/103 (10%)
Query: 1 MRIATGAS-------MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADR--VINQILTE 51
M + GAS A+ AP ++F DE+D+I KSR G G +R +NQ+L E
Sbjct: 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG-GVVSGNDEREQTLNQLLAE 141
Query: 52 MDGMGA-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 93
MDG G+ V ++ ATNRP+I+DPA++RPGR D+ + + PD
Sbjct: 142 MDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 105 bits (263), Expect = 1e-28
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAK--KNVFIIG 65
++AR P V+F DE+DS+ RG + ++ R+ + L ++DG + ++G
Sbjct: 170 AVARCQQPAVIFIDEIDSLLSQRGDGEHE---SSRRIKTEFLVQLDGATTSSEDRILVVG 226
Query: 66 ATNRPDIIDPAILRPGRLDQLIYIPLPDE 94
ATNRP ID A R RL + +YIPLP+
Sbjct: 227 ATNRPQEIDEAARR--RLVKRLYIPLPEA 253
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 106 bits (267), Expect = 1e-28
Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADR--VINQILTEMDGMGAKKNVFIIGAT 67
A+ APC++F DE+D++ + RG G GGG +R +NQ+L EMDG + ++ AT
Sbjct: 119 AKRHAPCIVFIDEIDAVGRKRG--SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 176
Query: 68 NRPDIIDPAILRPGRLDQLIYIPLPD 93
NRPDI+DPA+LRPGR D+ I I PD
Sbjct: 177 NRPDILDPALLRPGRFDRQIAIDAPD 202
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 103 bits (260), Expect = 1e-28
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKN---VFII 64
++AR P ++F DE+DS+ R S A+ R+ + L E DG+ + + ++
Sbjct: 107 AVARHMQPSIIFIDEVDSLLSERSSS---EHEASRRLKTEFLVEFDGLPGNPDGDRIVVL 163
Query: 65 GATNRPDIIDPAILRPGRLDQLIYIPLPDE 94
ATNRP +D A LR R + +Y+ LPDE
Sbjct: 164 AATNRPQELDEAALR--RFTKRVYVSLPDE 191
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 102 bits (256), Expect = 1e-27
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Query: 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKN--VFIIG 65
++AR P ++F D++DS+ R D A+ R+ + L E DG+ + + V ++G
Sbjct: 201 AVARELQPSIIFIDQVDSLLCERREGEHD---ASRRLKTEFLIEFDGVQSAGDDRVLVMG 257
Query: 66 ATNRPDIIDPAILRPGRLDQLIYIPLPDE 94
ATNRP +D A+LR R + +Y+ LP+E
Sbjct: 258 ATNRPQELDEAVLR--RFIKRVYVSLPNE 284
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 76.3 bits (188), Expect = 2e-18
Identities = 14/96 (14%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 10 ARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAK-KNVFIIGATN 68
A + + D+++ + G ++ V+ +L + + + + IIG T+
Sbjct: 120 AYKSQLSCVVVDDIERLLDYVPI----GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS 175
Query: 69 RPDIIDPAILRPGRLDQLIYIPL---PDEIWLILSD 101
R D++ + I++P +++ L
Sbjct: 176 RKDVLQ-EMEMLNAFSTTIHVPNIATGEQLLEALEL 210
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 28.0 bits (62), Expect = 0.55
Identities = 14/109 (12%), Positives = 25/109 (22%), Gaps = 24/109 (22%)
Query: 7 ASMARAAAPCVLFFDELDSIAKSRG-----------GSVGDGGGAADR---------VIN 46
A R ++ E+ + V G A +
Sbjct: 119 AIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFE 178
Query: 47 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLI--YIPLPD 93
+ E + A ++I + D Y+PLP
Sbjct: 179 SLQKE--RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPK 225
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide
fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3
Length = 970
Score = 27.1 bits (60), Expect = 1.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 30 RGGSVGDGGGAADRVI 45
RGG+VG GGG I
Sbjct: 641 RGGTVGRGGGPTHLAI 656
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 26.8 bits (59), Expect = 1.7
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 18/77 (23%)
Query: 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFI 63
+ V+ DE+D ++ G G ++ K + +
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGMS-------GGDRGGVGQLAQFC--------RKTSTPL 182
Query: 64 IGATNRPDIIDPAILRP 80
I N + P +RP
Sbjct: 183 ILICN--ERNLP-KMRP 196
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+
and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia
coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Length = 883
Score = 26.6 bits (59), Expect = 2.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 30 RGGSVGDGGGAADRVI 45
RGGS+G GG A +
Sbjct: 581 RGGSIGRGGAPAHAAL 596
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
sulfate, dehydroepiandrosterone sulfate, human placental
enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
c.76.1.2
Length = 562
Score = 26.6 bits (58), Expect = 2.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 28 KSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFII 64
KS+ G GD D + QIL +D + + I
Sbjct: 281 KSQHGVYGDAVEEMDWSVGQILNLLDELRLANDTLIY 317
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 26.0 bits (57), Expect = 2.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 55 MGAKKNVFIIGAT 67
MG++ + +IGAT
Sbjct: 1 MGSRSRILLIGAT 13
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 4.5
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 14/60 (23%)
Query: 63 IIGATNRPDIIDPAILRPGRLDQLIYIPL--------PDEIW-----LILSDKFLYKRKI 109
I+ N P D L P LDQ Y + E + L +FL ++KI
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL-EQKI 507
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase,
hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA
binding; 2.8A {Sulfolobus solfataricus}
Length = 268
Score = 25.4 bits (56), Expect = 5.0
Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 40 AADRVINQILTEMDGMGAKKNVFI-IGATNRPDIIDPAILRPGRLDQLIYIP 90
+ + + ++D + + + P +I+ +R + +LI I
Sbjct: 73 ILEGALYDHILQLDPTYQRDIEKVHVRIVGIPRVIELRKIRSTDIGKLITID 124
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 24.8 bits (54), Expect = 7.0
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 21 DELDSIAKSRGGSVGDGGGAADRVINQILTEMD 53
+EL + + G + + IN + ++D
Sbjct: 113 NELLDMFMAVQALNGQQTLSPEEFINLVFHKID 145
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 24.9 bits (54), Expect = 7.2
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 55 MGAKKNVFIIGAT 67
M K V I+G T
Sbjct: 1 MDKKSRVLIVGGT 13
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 7.2
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 28/107 (26%)
Query: 7 ASMARAAAPCVLF---------FDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA 57
A A +F F+EL + ++ VGD + +++++
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL---D 204
Query: 58 KKNVFIIGATNRPDII----DPAILRPGRLDQLIYIP--LPDEIWLI 98
+ VF G +I+ +P+ P + D L+ IP P LI
Sbjct: 205 AEKVFTQGL----NILEWLENPS-NTPDK-DYLLSIPISCP----LI 241
Score = 25.0 bits (54), Expect = 7.3
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 7 ASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGA 57
AS+A V+ + L + RG ++ A R +++ GM A
Sbjct: 1771 ASLAD-----VMSIESLVEVVFYRGMTMQV---AVPR--DELGRSNYGMIA 1811
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 24.5 bits (53), Expect = 9.7
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 16/82 (19%)
Query: 45 INQILTEMDGMGAKKNVFIIGATN------------RPDIIDPAIL----RPGRLDQLIY 88
I ++ ++ K+V+++G TN ++ PG LI
Sbjct: 147 IAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID 206
Query: 89 IPLPDEIWLILSDKFLYKRKIA 110
IPL +E L + + ++A
Sbjct: 207 IPLDEESSLYDTPGIINHHQMA 228
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.143 0.420
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,827,373
Number of extensions: 110400
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 47
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)