RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13774
(110 letters)
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 126 bits (317), Expect = 5e-38
Identities = 40/87 (45%), Positives = 57/87 (65%)
Query: 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGAT 67
A+ APC++F DE+D++ + RG VG G ++ +NQ+L EMDG + ++ AT
Sbjct: 95 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 154
Query: 68 NRPDIIDPAILRPGRLDQLIYIPLPDE 94
NRPDI+DPA+LRPGR D+ I I PD
Sbjct: 155 NRPDILDPALLRPGRFDRQIAIDAPDV 181
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 123 bits (310), Expect = 6e-37
Identities = 39/87 (44%), Positives = 60/87 (68%)
Query: 8 SMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGAT 67
A+ AAPC++F DE+D++ + RG +G G ++ +NQ+L EMDG + + +I AT
Sbjct: 98 EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 157
Query: 68 NRPDIIDPAILRPGRLDQLIYIPLPDE 94
NRPD++DPA+LRPGR D+ + + LPD
Sbjct: 158 NRPDVLDPALLRPGRFDRQVVVGLPDV 184
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 101 bits (253), Expect = 2e-28
Identities = 77/84 (91%), Positives = 80/84 (95%)
Query: 9 MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68
AR AAPCVLFFDELDSIAK+RGG++GDGGGAADRVINQILTEMDGM KKNVFIIGATN
Sbjct: 95 KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 154
Query: 69 RPDIIDPAILRPGRLDQLIYIPLP 92
RPDIIDPAILRPGRLDQLIYIPLP
Sbjct: 155 RPDIIDPAILRPGRLDQLIYIPLP 178
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 91.6 bits (227), Expect = 4e-24
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 9 MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68
V+ D L ++ + GG G R +L+++ M A + +I + N
Sbjct: 177 ARAMLQHRVIVIDSLKNVIGAAGG--NTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN 234
Query: 69 R---PDIIDPAILRPGRLDQLIYIPLPDE 94
D I + R + + D
Sbjct: 235 PTSNDDKIVELVKEASRSNSTSLVISTDV 263
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 61.6 bits (148), Expect = 3e-13
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 9 MARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATN 68
A AP ++F DELD+IA R G R+++Q+LT MDG+ + +V ++ ATN
Sbjct: 92 EAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 148
Query: 69 RPDIIDPAILRPGRLDQLIYIPLPDE 94
RP+ IDPA+ R GR D+ + I +PD
Sbjct: 149 RPNSIDPALRRFGRFDREVDIGIPDA 174
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 49.6 bits (117), Expect = 6e-09
Identities = 10/97 (10%), Positives = 20/97 (20%), Gaps = 8/97 (8%)
Query: 7 ASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQI--------LTEMDGMGAK 58
+ + + + G D I T+M M
Sbjct: 87 VKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP 146
Query: 59 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEI 95
K +G R + + R + +
Sbjct: 147 KINSYLGTIERYETMYADDPMTARATPKQAHDIVVKN 183
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 48.8 bits (115), Expect = 9e-09
Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 15 PCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFI-IGATNRPDII 73
+ D+++ + G ++ V+ +L + + + IG T+R D++
Sbjct: 101 LSCVVVDDIERLLDYVP----IGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 156
Query: 74 DPAILRPGRLDQLIYIPLP---DEIWLILS 100
+ I++P +++ L
Sbjct: 157 QEMEML-NAFSTTIHVPNIATGEQLLEALE 185
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 47.7 bits (113), Expect = 3e-08
Identities = 12/91 (13%), Positives = 17/91 (18%), Gaps = 13/91 (14%)
Query: 4 ATGASMARAAAPCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFI 63
G P + LD++ GSV +
Sbjct: 210 VKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPP----------G 259
Query: 64 IGATNRPDIIDPAILRPGRLDQLIYIPLPDE 94
I N R + I D
Sbjct: 260 IVTMNE---YSVPKTLQARFVKQIDFRPKDY 287
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 44.1 bits (103), Expect = 5e-07
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 14 APCVLFFDELDSIAKSRGGSVGDGGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 73
++F DE+D I K S D + V +L ++G ++ + I
Sbjct: 115 QNGIVFIDEIDKICKKGEYSGADVSR--EGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 172
Query: 74 DPA--ILRPGRLDQLIYIPLPDEIWLILSDKFLYKRKI 109
A + RP L + LP + L ++R +
Sbjct: 173 SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERIL 210
>d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase
15 {Human (Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 25.7 bits (56), Expect = 0.83
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 64 IGATNRPDIIDPA---ILRPGRLDQLIYIPLPDEIWLILSDKF 103
G + ++ L+ +D+L YI LP E W L +
Sbjct: 62 PGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWY 104
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 25.6 bits (55), Expect = 1.3
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 66 ATNRPDIIDPAILRPGRLDQLIYIPLPD 93
+T + P L++L+ P PD
Sbjct: 1 STPTSQALYSDFSPPEGLEELLSAPPPD 28
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase
{Loblolly pine (Pinus taeda) [TaxId: 3352]}
Length = 307
Score = 24.0 bits (50), Expect = 5.4
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 56 GAKKNVFIIGAT 67
G++ + +IGAT
Sbjct: 1 GSRSRILLIGAT 12
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde
dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Length = 183
Score = 23.0 bits (48), Expect = 9.2
Identities = 3/13 (23%), Positives = 8/13 (61%)
Query: 55 MGAKKNVFIIGAT 67
G + + ++GA+
Sbjct: 2 SGEEVRIAVLGAS 14
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.143 0.420
Gapped
Lambda K H
0.267 0.0628 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 431,133
Number of extensions: 19216
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 17
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)