BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13775
         (119 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           1.
 pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           1.
 pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           1.
 pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           2.
 pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           2.
 pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           2.
 pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           4b.
 pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           4b.
 pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           4b.
 pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           5.
 pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           5.
 pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           5.
 pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           3.
 pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           3.
 pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           3.
 pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           4a.
 pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           4a.
 pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
           F1-Atpase During Controlled Dehydration: Hydration State
           4a
          Length = 553

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 446 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 506 KFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGF 551


>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
 pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
 pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
 pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
 pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
 pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
 pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
 pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
 pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
 pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
 pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
 pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
 pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
 pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
 pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
 pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
 pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
 pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
 pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
           Monomeric Form Of The Inhibitor Protein, If1.
 pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
           Monomeric Form Of The Inhibitor Protein, If1.
 pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
           Monomeric Form Of The Inhibitor Protein, If1
          Length = 510

 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 403 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 462

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 463 KFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGF 508


>pdb|2F43|A Chain A, Rat Liver F1-atpase
          Length = 510

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 403 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 462

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 463 KFESAFLSHVVSQHQSLLGNIRSDGKISEQSDAKLKEIVTNFLAGF 508


>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
 pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
 pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
 pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
           With 4-Chloro-7-Nitrobenzofurazan
 pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
           With 4-Chloro-7-Nitrobenzofurazan
 pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
           With 4-Chloro-7-Nitrobenzofurazan
 pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
           From Yeast Mitochondria
 pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
           From Yeast Mitochondria
 pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
           From Yeast Mitochondria
 pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
 pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
 pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
 pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
           Aluminium Fluoride
 pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
           Aluminium Fluoride
 pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
           Aluminium Fluoride
 pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
           (Dicyclohexylcarbodiimide)
 pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
           (Dicyclohexylcarbodiimide)
 pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
           (Dicyclohexylcarbodiimide)
 pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
           Presence Of 5mm Amppnp
 pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
           Presence Of 5mm Amppnp
 pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
           Presence Of 5mm Amppnp
 pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
           Sites Occupied)
 pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
           Sites Occupied)
 pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
           Sites Occupied)
 pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
           Inhibitor Protein If1
 pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
           Inhibitor Protein If1
 pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
 pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
 pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
 pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
 pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
 pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
 pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
 pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
 pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
 pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
           Mitochondria (Bovine F1-Atpase Crystallised In The
           Absence Of Azide)
 pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
           Mitochondria (Bovine F1-Atpase Crystallised In The
           Absence Of Azide)
 pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
           Mitochondria (Bovine F1-Atpase Crystallised In The
           Absence Of Azide)
 pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
           Atp Synthase
 pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
           Atp Synthase
 pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
           Atp Synthase
 pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
           Atp Synthase
 pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
           Atp Synthase
 pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
           Atp Synthase
 pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
           Nucleotide, With Magnesium Ion Released In The Empty
           Site
 pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
           Nucleotide, With Magnesium Ion Released In The Empty
           Site
 pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
           Nucleotide, With Magnesium Ion Released In The Empty
           Site
          Length = 510

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 403 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 462

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 463 KFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 508


>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
 pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
 pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
 pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
           Antibiotic Efrapeptin
 pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
           Antibiotic Efrapeptin
 pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
           Antibiotic Efrapeptin
          Length = 510

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 403 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 462

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 463 KFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 508


>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
           Synthase
 pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
           Synthase
 pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
           Synthase
          Length = 492

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 385 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 444

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 445 KFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 490


>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
          Length = 510

 Score =  116 bits (290), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 403 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 462

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 463 KFESAFLSHVVSQHQSLLGNIRTDGKISEQSDAKLKEIVTNFLAGF 508


>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
           Inhibitor Protein If1
          Length = 487

 Score =  115 bits (287), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 72/92 (78%), Gaps = 4/92 (4%)

Query: 30  MLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSE 85
           +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT FE  FL+H+ S  
Sbjct: 386 LLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQH 445

Query: 86  RGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
           + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 446 QALLGKIRTDGKISEESDAKLKEIVTNFLAGF 477


>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
           Resolution
 pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
           Resolution
 pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
           Resolution
          Length = 545

 Score = 75.5 bits (184), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)

Query: 27  KSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
           ++L+   RL  LL   QY P+A EEQV +IY GV GHLD ++ ++I  FE  FL+++KS+
Sbjct: 453 QTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSN 512

Query: 85  ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              LL  I+++G+++++  A LK+   +F+A F
Sbjct: 513 HNELLTEIREKGELSKELLASLKSATESFVATF 545


>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
 pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
          Length = 486

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)

Query: 27  KSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
           ++L+   RL  LL   QY P+A EEQV +IY GV GHLD ++ ++I  FE  FL+++KS+
Sbjct: 394 QTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSN 453

Query: 85  ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              LL  I+++G+++++  A LK+   +F+A F
Sbjct: 454 HNELLTEIREKGELSKELLASLKSATESFVATF 486


>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
 pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
 pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
 pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
           Subtomogram Average
          Length = 485

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)

Query: 27  KSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
           ++L+   RL  LL   QY P+A EEQV +IY GV GHLD ++ ++I  FE  FL+++KS+
Sbjct: 393 QTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSN 452

Query: 85  ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              LL  I+++G+++++  A LK+   +F+A F
Sbjct: 453 HNELLTEIREKGELSKELLASLKSATESFVATF 485


>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
 pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
 pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
 pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
 pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
 pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Gamma-I270t
 pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Beta-V279f
 pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
           Yeast F-Atp Synthase
 pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
           Yeast F-Atp Synthase
 pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
           Yeast F-Atp Synthase
 pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
 pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
 pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
 pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
 pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
 pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
           Inhibited By Its Regulatory Protein If1
          Length = 510

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)

Query: 27  KSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
           ++L+   RL  LL   QY P+A EEQV +IY GV GHLD ++ ++I  FE  FL+++KS+
Sbjct: 418 QTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSN 477

Query: 85  ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              LL  I+++G+++++  A LK+   +F+A F
Sbjct: 478 HNELLTEIREKGELSKELLASLKSATESFVATF 510


>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
 pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-N67i
          Length = 510

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)

Query: 27  KSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
           ++L+   RL  LL   QY P+A EEQV +IY GV GHLD ++ ++I  FE  FL+++KS+
Sbjct: 418 QTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSN 477

Query: 85  ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              LL  I+++G+++++  A LK+   +F+A F
Sbjct: 478 HNELLTEIREKGELSKELLASLKSATESFVATF 510


>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
 pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
           Alpha-F405s
          Length = 510

 Score = 75.5 bits (184), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)

Query: 27  KSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
           ++L+   RL  LL   QY P+A EEQV +IY GV GHLD ++ ++I  FE  FL+++KS+
Sbjct: 418 QTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSN 477

Query: 85  ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              LL  I+++G+++++  A LK+   +F+A F
Sbjct: 478 HNELLTEIREKGELSKELLASLKSATESFVATF 510


>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
           From Thermotoga Maritima At 2.10 A Resolution
          Length = 515

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query: 41  QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITE 100
           QY P  +EEQV V++ GVRG+LD L   ++  FEKEFL       + +L+ IK + ++T 
Sbjct: 437 QYSPXPVEEQVVVLFAGVRGYLDDLPVEEVRRFEKEFLRFXHEKHQDILDDIKTKKELTS 496

Query: 101 DTDAKLKTVVTNFLANF 117
           +T+ KLK  +  F   F
Sbjct: 497 ETEEKLKKAIEEFKTTF 513


>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
           Subunit Epsilon
 pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
           Subunit Epsilon
 pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
           Subunit Epsilon
 pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
           Subunit Epsilon
 pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
           Subunit Epsilon
 pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
           Subunit Epsilon
 pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
           Subunit Epsilon
 pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
           Subunit Epsilon
 pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
           Subunit Epsilon
 pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
           Subunit Epsilon
 pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
           Subunit Epsilon
 pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
           Subunit Epsilon
          Length = 513

 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 44/75 (58%)

Query: 41  QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITE 100
           QY PM++ +Q  V++   RG+L  ++ +KI +FE   LA++      L++ I + G   +
Sbjct: 435 QYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYND 494

Query: 101 DTDAKLKTVVTNFLA 115
           + + KLK ++ +F A
Sbjct: 495 EIEGKLKGILDSFKA 509


>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
           Spinach
 pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
           Complexed With Tentoxin
          Length = 507

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%)

Query: 41  QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITE 100
           Q  P+ +EEQV  IY G  G+LD L+  ++  +  E   ++K+++    E I      TE
Sbjct: 425 QSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTE 484

Query: 101 DTDAKLKTVVTNFLANF 117
           + +A LK  +   +  F
Sbjct: 485 EAEALLKEAIQEQMERF 501


>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
           Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
 pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
           Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
 pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
           Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
          Length = 502

 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 41  QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITE 100
           ++ PM +EEQV  IY    G +D +    +  FE+E L+ +++++  LL+ I++ G++ +
Sbjct: 424 EHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELLSFMRANKDSLLDHIRQTGELPD 483

Query: 101 DTDAKLKTVVTNFLANFT 118
             +  L   +  F   FT
Sbjct: 484 TKE--LDAAIEEFKKGFT 499


>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
           Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
           Ps3
          Length = 502

 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 44  PMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTD 103
           P+ +E+QV +IY   RG LD +    +  FEKEF   +  + + LLE I+    +  + D
Sbjct: 427 PIPVEKQVLIIYALTRGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTKDLPNEDD 486


>pdb|1RI6|A Chain A, Structure Of A Putative Isomerase From E. Coli
          Length = 343

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 42  YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHI 81
           +VP   ++++ +      GHL   DPA++TT E     H+
Sbjct: 144 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 183


>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1
 pdb|2FBM|B Chain B, Acetyltransferase Domain Of Cdy1
 pdb|2FBM|C Chain C, Acetyltransferase Domain Of Cdy1
          Length = 291

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 39  LGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIK 93
           L  Y P+ +EE  A++ C ++  L++ +       E E L  I SS +G+   +K
Sbjct: 221 LASYNPIVLEECKALVRCNIKLELEQANER-----ECEVLRKIWSSAQGIESMLK 270


>pdb|3V03|A Chain A, Crystal Structure Of Bovine Serum Albumin
 pdb|3V03|B Chain B, Crystal Structure Of Bovine Serum Albumin
 pdb|4F5S|A Chain A, Crystal Structure Of Bovine Serum Albumin
 pdb|4F5S|B Chain B, Crystal Structure Of Bovine Serum Albumin
          Length = 583

 Score = 26.2 bits (56), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 17/74 (22%)

Query: 42  YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITED 101
           YVP A +E++   +          D   +   EK+        +  L+E +K + K TE+
Sbjct: 496 YVPKAFDEKLFTFHA---------DICTLPDTEKQI-----KKQTALVELLKHKPKATEE 541

Query: 102 TDAKLKTVVTNFLA 115
              +LKTV+ NF+A
Sbjct: 542 ---QLKTVMENFVA 552


>pdb|1PIX|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of
           The Bacterial Ion Pump Glutaconyl-Coenzyme A
           Decarboxylase
 pdb|1PIX|B Chain B, Crystal Structure Of The Carboxyltransferase Subunit Of
           The Bacterial Ion Pump Glutaconyl-Coenzyme A
           Decarboxylase
          Length = 587

 Score = 26.2 bits (56), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 9   PQKAGYHYSNFTARIGLNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDP- 67
           P   GYH  + T  I   K+ M      I+ G      ++ + A     +     K +P 
Sbjct: 193 PAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRTGKTEPP 252

Query: 68  --AKITTFEKEFLAHIKSSERGLLESIKK 94
               I   E  F+  + +SE G+LE IKK
Sbjct: 253 GAVDIHYTETGFMREVYASEEGVLEGIKK 281


>pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
 pdb|1A2Z|B Chain B, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
 pdb|1A2Z|C Chain C, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
 pdb|1A2Z|D Chain D, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
          Length = 220

 Score = 25.8 bits (55), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 9   PQKAGYHYSNFTARIGLNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLD 66
           P KAG+ +  +T    +NK  +L +  P        M +E ++  I   V+  LD L+
Sbjct: 160 PLKAGFIHVPYTPDQVVNKFFLLGKNTP-------SMCLEAEIKAIELAVKVSLDYLE 210


>pdb|2HXR|A Chain A, Structure Of The Ligand Binding Domain Of E. Coli Cynr, A
           Transcriptional Regulator Controlling Cyanate Metabolism
 pdb|2HXR|B Chain B, Structure Of The Ligand Binding Domain Of E. Coli Cynr, A
           Transcriptional Regulator Controlling Cyanate Metabolism
 pdb|3HFU|A Chain A, Crystal Structure Of The Ligand Binding Domain Of E. Coli
           Cynr With Its Specific Effector Azide
 pdb|3HFU|B Chain B, Crystal Structure Of The Ligand Binding Domain Of E. Coli
           Cynr With Its Specific Effector Azide
 pdb|3HFU|C Chain C, Crystal Structure Of The Ligand Binding Domain Of E. Coli
           Cynr With Its Specific Effector Azide
 pdb|3HFU|D Chain D, Crystal Structure Of The Ligand Binding Domain Of E. Coli
           Cynr With Its Specific Effector Azide
          Length = 238

 Score = 25.8 bits (55), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 9/48 (18%)

Query: 30  MLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEF 77
           +L+  L +++ Q+ P+A+ EQVA         L +L   K+     EF
Sbjct: 99  LLTESLALVVAQHHPLAVHEQVA---------LSRLHDEKLVLLSAEF 137


>pdb|3BM7|A Chain A, Crystal Structure Of A Putative Antibiotic Biosynthesis
          Monooxygenase (Cc_2132) From Caulobacter Crescentus
          Cb15 At 1.35 A Resolution
          Length = 115

 Score = 25.8 bits (55), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 64 KLDPAKITTFEKEFL---AHIKSSERGLL 89
          K+ PAK   FEK FL   A +K++E G L
Sbjct: 28 KVQPAKAAEFEKVFLDLAAKVKANEPGCL 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,358,807
Number of Sequences: 62578
Number of extensions: 114055
Number of successful extensions: 269
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 28
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)