RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13775
(119 letters)
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 110 bits (277), Expect = 7e-30
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 33 RRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 90
+++ LL QY PM++ +Q V++ RG+L ++ +KI +FE LA++ L++
Sbjct: 425 QKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHAPLMQ 484
Query: 91 SIKKEGKITEDTDAKLKTVVTNFLANFT 118
I + G ++ + KLK ++ +F A +
Sbjct: 485 EINQTGGYNDEIEGKLKGILDSFKATQS 512
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 110 bits (276), Expect = 1e-29
Identities = 56/88 (63%), Positives = 68/88 (77%), Gaps = 2/88 (2%)
Query: 33 RRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 90
RL LL GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT FE FL+H+ S + LL
Sbjct: 422 VRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLG 481
Query: 91 SIKKEGKITEDTDAKLKTVVTNFLANFT 118
I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 482 KIRTDGKISEESDAKLKEIVTNFLAGFE 509
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 108 bits (272), Expect = 4e-29
Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 33 RRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 90
+RL LL QY PM +EEQV V++ GVRG+LD L ++ FEKEFL + + +L+
Sbjct: 427 QRLMELLKQEQYSPMPVEEQVVVLFAGVRGYLDDLPVEEVRRFEKEFLRFMHEKHQDILD 486
Query: 91 SIKKEGKITEDTDAKLKTVVTNFLANF 117
IK + ++T +T+ KLK + F F
Sbjct: 487 DIKTKKELTSETEEKLKKAIEEFKTTF 513
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 107 bits (270), Expect = 6e-29
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 33 RRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 90
+RL LL Q P+ +EEQV IY G G+LD L+ ++ + E ++K+++ E
Sbjct: 415 QRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQE 474
Query: 91 SIKKEGKITEDTDAKLKTVVTNFLANFT 118
I TE+ +A LK + + F
Sbjct: 475 IISSTKTFTEEAEALLKEAIQEQMERFL 502
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 100 bits (252), Expect = 2e-26
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 33 RRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 90
R +L ++ PM +EEQV IY G +D + + FE+E L+ +++++ LL+
Sbjct: 414 ERTVEILKQDEHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELLSFMRANKDSLLD 473
Query: 91 SIKKEGKITEDTDAKLKTVVTNFLANFT 118
I++ G++ + +L + F FT
Sbjct: 474 HIRQTGELPD--TKELDAAIEEFKKGFT 499
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.29
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 17/79 (21%)
Query: 39 LGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAH--IKSSERGLLESIKKEG 96
LG YV +E G D++ +T FE +L I + LL+
Sbjct: 65 LG-YVSSLVEPSKV-------GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE----- 111
Query: 97 KITEDTDAKLKTVVTNFLA 115
+ T K K ++ N++
Sbjct: 112 --NDTTLVKTKELIKNYIT 128
Score = 26.6 bits (58), Expect = 2.8
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 19/104 (18%)
Query: 5 VRLLPQKAGYHYSNFTAR-IGLNKSLMLSRRLP---ILLGQYVPMAIEEQVAVIYCGVRG 60
V P H+ + I N S M+ + + + E + + +G
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 61 HLDKLD---PAKITTFEKEFLAHIKSSERGLLESIKKEGKITED 101
L PA +T E A E +K +G I D
Sbjct: 1725 LLSATQFTQPA-LTLME---KA--------AFEDLKSKGLIPAD 1756
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural
genomics, PSI-biology; 2.70A {Synechocystis SP}
Length = 148
Score = 26.3 bits (58), Expect = 2.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 73 FEKEFLAHIKSSERGLLESIKKEGKIT 99
FE++ +I +SE LES +I
Sbjct: 37 FERDLEPYIINSEFTALESKLSNNEIN 63
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP:
a.118.1.14
Length = 260
Score = 25.1 bits (54), Expect = 6.3
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 58 VRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIK 93
VR L+KL P K+ +E L I
Sbjct: 15 VRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVID 50
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 25.4 bits (56), Expect = 6.8
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 62 LDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDT--DAKLKTVVTNFLA 115
L+ KI KEF I + L GK + + + + K + F+
Sbjct: 24 LNSELNTKIVNRGKEFFGSISGEKPSLFNKGAWMGKAMDWSMQNEQFKIQMFRFVD 79
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.391
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,776,127
Number of extensions: 95094
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 15
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)