RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13775
         (119 letters)



>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain
           3 {Cow (Bos taurus) [TaxId: 9913]}
          Length = 131

 Score = 78.8 bits (194), Expect = 9e-21
 Identities = 52/78 (66%), Positives = 64/78 (82%)

Query: 40  GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKIT 99
           GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT FE  FL+H+ S  + LL  I+ +GKI+
Sbjct: 52  GQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKIS 111

Query: 100 EDTDAKLKTVVTNFLANF 117
           E++DAKLK +VTNFLA F
Sbjct: 112 EESDAKLKEIVTNFLAGF 129


>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain
           3 {Spinach (Spinacia oleracea), chloroplast [TaxId:
           3562]}
          Length = 129

 Score = 75.3 bits (185), Expect = 2e-19
 Identities = 23/78 (29%), Positives = 39/78 (50%)

Query: 40  GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKIT 99
            Q  P+ +EEQV  IY G  G+LD L+  ++  +  E   ++K+++    E I      T
Sbjct: 52  PQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFT 111

Query: 100 EDTDAKLKTVVTNFLANF 117
           E+ +A LK  +   +  F
Sbjct: 112 EEAEALLKEAIQEQMERF 129


>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain
           3 {Bacillus sp., strain ps3 [TaxId: 1409]}
          Length = 131

 Score = 70.7 bits (173), Expect = 1e-17
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 40  GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKIT 99
             + P+ +E+QV +IY   RG LD +    +  FEKEF   +  + + LLE I+    + 
Sbjct: 52  DLHQPIPVEKQVLIIYALTRGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTKDLP 111

Query: 100 EDTDAKLKTVVTNFLANFT 118
              +  L   +  F   F 
Sbjct: 112 N--EDDLNQAIEAFKKTFV 128


>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 25.9 bits (56), Expect = 1.4
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 58 VRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIK 93
          VR  L+KL P       K+       +E  L   I 
Sbjct: 15 VRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVID 50


>d2gfna2 a.121.1.1 (A:81-199) Probable transcriptional regulator
           RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
          Length = 119

 Score = 23.5 bits (50), Expect = 6.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 77  FLAHIKSSERGLLESIKKEGKITEDTDAKLKTV 109
           FLA  +   R  + + ++EG ++ D DA   TV
Sbjct: 48  FLARWRGVVRESVVAAQREGTVSTDLDADAVTV 80


>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
           imidazoleglycerolphosphate synthase HisF {Baker's yeast
           (Saccharomyces cerevisiae), His7 [TaxId: 4932]}
          Length = 232

 Score = 23.7 bits (50), Expect = 7.4
 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 82  KSSERGL--LES-IKKEGKITEDTDAKLKTVVTN 112
           KS + GL  +E+ +K++     +  A+ K ++ N
Sbjct: 199 KSGKAGLNVIENFLKQQSPPIPNYSAEEKELLMN 232


>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein
           {Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 154

 Score = 23.1 bits (50), Expect = 8.4
 Identities = 10/82 (12%), Positives = 17/82 (20%), Gaps = 14/82 (17%)

Query: 4   NVRLLPQKAGYHYSNFTARIGLNKSLMLSRRLPILLGQYVPMAIEEQVAVI-------YC 56
           N     +K                S  L   +       + +                Y 
Sbjct: 76  NPSFEMKKPELADKAVRVSSCPPGSEGLCNLMG------LEVDESSSRDAWSIRTDEEYA 129

Query: 57  GVRGHLDKL-DPAKITTFEKEF 77
            V   +D    PA      ++F
Sbjct: 130 WVMELMDARGTPAGFKLLIRDF 151


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 427,999
Number of extensions: 17586
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 9
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)