BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13776
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/327 (67%), Positives = 230/327 (70%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GIKAVDSLVPIGRGQRELIIGDRQTGKT++AIDTIINQK
Sbjct: 192 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKR-------------------- 231
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
F D DEKKKLYCIYVAIGQKRSTVAQ+VKRLTD+ AM YT
Sbjct: 232 FNDG-------------------TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 272
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
I+VSATASDAAPLQYLAPYSGC+MGE+FRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP
Sbjct: 273 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 332
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQAGDVSAYIPTNVISITDGQ
Sbjct: 333 GREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 392
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLETELFYKG
Sbjct: 393 IFLETELFYKG------------------------------------------------- 403
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQTRAMKQ
Sbjct: 404 --IRPAINVGLSVSRVGSAAQTRAMKQ 428
Score = 178 bits (451), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 91/97 (93%)
Query: 58 APKAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQA 117
+ +AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQA
Sbjct: 315 SKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQA 374
Query: 118 GDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
GDVSAYIPTNVISITDGQIFLETELFYK R +IN G
Sbjct: 375 GDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 411
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/53 (94%), Positives = 53/53 (100%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGM+LNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE+LLGRVVDALG
Sbjct: 103 KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALG 155
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/327 (67%), Positives = 230/327 (70%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GIKAVDSLVPIGRGQRELIIGDRQTGKT++AIDTIINQK
Sbjct: 149 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKR-------------------- 188
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
F D DEKKKLYCIYVAIGQKRSTVAQ+VKRLTD+ AM YT
Sbjct: 189 FNDG-------------------TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
I+VSATASDAAPLQYLAPYSGC+MGE+FRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP
Sbjct: 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 289
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQAGDVSAYIPTNVISITDGQ
Sbjct: 290 GREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 349
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLETELFYKG
Sbjct: 350 IFLETELFYKG------------------------------------------------- 360
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQTRAMKQ
Sbjct: 361 --IRPAINVGLSVSRVGSAAQTRAMKQ 385
Score = 177 bits (450), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 91/97 (93%)
Query: 58 APKAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQA 117
+ +AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQA
Sbjct: 272 SKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQA 331
Query: 118 GDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
GDVSAYIPTNVISITDGQIFLETELFYK R +IN G
Sbjct: 332 GDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 368
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/53 (94%), Positives = 53/53 (100%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGM+LNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE+LLGRVVDALG
Sbjct: 60 KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALG 112
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/327 (67%), Positives = 230/327 (70%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GIKAVDSLVPIGRGQRELIIGDRQTGKT++AIDTIINQK
Sbjct: 149 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKR-------------------- 188
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
F D DEKKKLYCIYVAIGQKRSTVAQ+VKRLTD+ AM YT
Sbjct: 189 FNDG-------------------TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
I+VSATASDAAPLQYLAPYSGC+MGE+FRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP
Sbjct: 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 289
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQAGDVSAYIPTNVISITDGQ
Sbjct: 290 GREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 349
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLETELFYKG
Sbjct: 350 IFLETELFYKG------------------------------------------------- 360
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQTRAMKQ
Sbjct: 361 --IRPAINVGLSVSRVGSAAQTRAMKQ 385
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 91/97 (93%)
Query: 58 APKAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQA 117
+ +AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQA
Sbjct: 272 SKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQA 331
Query: 118 GDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
GDVSAYIPTNVISITDGQIFLETELFYK R +IN G
Sbjct: 332 GDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 368
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/53 (94%), Positives = 53/53 (100%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGM+LNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE+LLGRVVDALG
Sbjct: 60 KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALG 112
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/327 (67%), Positives = 230/327 (70%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GIKAVDSLVPIGRGQRELIIGDRQTGKT++AIDTIINQK
Sbjct: 149 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKR-------------------- 188
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
F D DEKKKLYCIYVAIGQKRSTVAQ+VKRLTD+ AM YT
Sbjct: 189 FNDG-------------------TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
I+VSATASDAAPLQYLAPYSGC+MGE+FRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP
Sbjct: 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 289
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQAGDVSAYIPTNVISITDGQ
Sbjct: 290 GREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 349
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLETELFYKG
Sbjct: 350 IFLETELFYKG------------------------------------------------- 360
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQTRAMKQ
Sbjct: 361 --IRPAINVGLSVSRVGSAAQTRAMKQ 385
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 91/97 (93%)
Query: 58 APKAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQA 117
+ +AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQA
Sbjct: 272 SKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQA 331
Query: 118 GDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
GDVSAYIPTNVISITDGQIFLETELFYK R +IN G
Sbjct: 332 GDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 368
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/53 (94%), Positives = 53/53 (100%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGM+LNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE+LLGRVVDALG
Sbjct: 60 KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALG 112
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/327 (67%), Positives = 230/327 (70%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GIKAVDSLVPIGRGQRELIIGDRQTGKT++AIDTIINQK
Sbjct: 131 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKR-------------------- 170
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
F D DEKKKLYCIYVAIGQKRSTVAQ+VKRLTD+ AM YT
Sbjct: 171 FNDG-------------------TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 211
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
I+VSATASDAAPLQYLAPYSGC+MGE+FRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP
Sbjct: 212 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 271
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQAGDVSAYIPTNVISITDGQ
Sbjct: 272 GREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 331
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLETELFYKG
Sbjct: 332 IFLETELFYKG------------------------------------------------- 342
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQTRAMKQ
Sbjct: 343 --IRPAINVGLSVSRVGSAAQTRAMKQ 367
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 91/97 (93%)
Query: 58 APKAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQA 117
+ +AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQA
Sbjct: 254 SKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQA 313
Query: 118 GDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
GDVSAYIPTNVISITDGQIFLETELFYK R +IN G
Sbjct: 314 GDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 350
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/53 (94%), Positives = 53/53 (100%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGM+LNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE+LLGRVVDALG
Sbjct: 42 KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALG 94
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/327 (67%), Positives = 230/327 (70%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GIKAVDSLVPIGRGQRELIIGDRQTGKT++AIDTIINQK
Sbjct: 126 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKR-------------------- 165
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
F D DEKKKLYCIYVAIGQKRSTVAQ+VKRLTD+ AM YT
Sbjct: 166 FNDG-------------------TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 206
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
I+VSATASDAAPLQYLAPYSGC+MGE+FRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP
Sbjct: 207 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 266
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQAGDVSAYIPTNVISITDGQ
Sbjct: 267 GREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 326
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLETELFYKG
Sbjct: 327 IFLETELFYKG------------------------------------------------- 337
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQTRAMKQ
Sbjct: 338 --IRPAINVGLSVSRVGSAAQTRAMKQ 362
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 91/97 (93%)
Query: 58 APKAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQA 117
+ +AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQA
Sbjct: 249 SKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQA 308
Query: 118 GDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
GDVSAYIPTNVISITDGQIFLETELFYK R +IN G
Sbjct: 309 GDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 345
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/53 (94%), Positives = 53/53 (100%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGM+LNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE+LLGRVVDALG
Sbjct: 37 KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALG 89
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 406 bits (1044), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/327 (66%), Positives = 230/327 (70%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GIKAVDSLVPIGRGQRELIIGDRQTGKT++AIDTIINQK
Sbjct: 149 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKR-------------------- 188
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
F D DEKKKLYCIYVAIGQKRSTVAQ+VKRLTD+ AM YT
Sbjct: 189 FNDG-------------------TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
I+VSATASDAAPLQYLAPYSGC+MGE+FRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP
Sbjct: 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 289
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AKM+++ GGGSLTALPVIETQAGDVSAYIPTNVISITDGQ
Sbjct: 290 GREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 349
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLETELFYKG
Sbjct: 350 IFLETELFYKG------------------------------------------------- 360
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQTRAMKQ
Sbjct: 361 --IRPAINVGLSVSRVGSAAQTRAMKQ 385
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/97 (86%), Positives = 91/97 (93%)
Query: 58 APKAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQA 117
+ +AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AKM+++ GGGSLTALPVIETQA
Sbjct: 272 SKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQA 331
Query: 118 GDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
GDVSAYIPTNVISITDGQIFLETELFYK R +IN G
Sbjct: 332 GDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 368
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 49/53 (92%), Positives = 53/53 (100%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGM+LNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVG++LLGRVVDALG
Sbjct: 60 KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALG 112
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 406 bits (1044), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/327 (66%), Positives = 230/327 (70%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GIKAVDSLVPIGRGQRELIIGDRQTGKT++AIDTIINQK
Sbjct: 149 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKR-------------------- 188
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
F D DEKKKLYCIYVAIGQKRSTVAQ+VKRLTD+ AM YT
Sbjct: 189 FNDG-------------------TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
I+VSATASDAAPLQYLAPYSGC+MGE+FRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP
Sbjct: 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 289
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AKM+++ GGGSLTALPVIETQAGDVSAYIPTNVISITDGQ
Sbjct: 290 GREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 349
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLETELFYKG
Sbjct: 350 IFLETELFYKG------------------------------------------------- 360
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQTRAMKQ
Sbjct: 361 --IRPAINVGLSVSRVGSAAQTRAMKQ 385
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/97 (86%), Positives = 91/97 (93%)
Query: 58 APKAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQA 117
+ +AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AKM+++ GGGSLTALPVIETQA
Sbjct: 272 SKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQA 331
Query: 118 GDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
GDVSAYIPTNVISITDGQIFLETELFYK R +IN G
Sbjct: 332 GDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 368
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/53 (92%), Positives = 53/53 (100%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGM+LNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVG++LLGRVVDALG
Sbjct: 60 KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALG 112
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 219/327 (66%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
G+KAVD+LVPIGRGQRELIIGDRQTGKTA+A+DTI+NQK
Sbjct: 186 GLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRW------------------- 226
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
+NG DE KKLYC+YVA+GQKRSTVAQ+V+ L AM Y+
Sbjct: 227 --NNGS------------------DESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYS 266
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
IIV+ATAS+AAPLQYLAP++ ++GE+FRDNGKHALI+YDDLSKQAVAYRQ+SLLLRRPP
Sbjct: 267 IIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPP 326
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AK+SE G GSLTALPVIETQ GDVSAYIPTNVISITDGQ
Sbjct: 327 GREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQ 386
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLE ELFYKG
Sbjct: 387 IFLEAELFYKG------------------------------------------------- 397
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQ +A+KQ
Sbjct: 398 --IRPAINVGLSVSRVGSAAQVKALKQ 422
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/95 (85%), Positives = 86/95 (90%)
Query: 60 KAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGD 119
+AVAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLER+AK+SE G GSLTALPVIETQ GD
Sbjct: 311 QAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGD 370
Query: 120 VSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
VSAYIPTNVISITDGQIFLE ELFYK R +IN G
Sbjct: 371 VSAYIPTNVISITDGQIFLEAELFYKGIRPAINVG 405
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 77/124 (62%), Gaps = 10/124 (8%)
Query: 155 QLIIGDRQTGKTALAIDTIINQXXXXXXXXXXXXXXSAGIKAVDSLVPIGRGQRELIIGD 214
+LIIGDRQTGKTA+A+DTI+NQ K V +G+ +R +
Sbjct: 202 ELIIGDRQTGKTAVALDTILNQKRWNNGSDESK-------KLYCVYVAVGQ-KRSTVAQL 253
Query: 215 RQT--GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 272
QT A+ I+ + AAPLQYLAP++ ++GE+FRDNGKHALI+YDDLSKQAV
Sbjct: 254 VQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAV 313
Query: 273 AYRQ 276
AYRQ
Sbjct: 314 AYRQ 317
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 48/53 (90%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGMALNLEP VG+V+FG+DRL+KEG++VKRTG IVDVPVG LLGRVVDALG
Sbjct: 97 KGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALG 149
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 219/327 (66%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
G+KAVD+LVPIGRGQRELIIGDRQTGKTA+A+DTI+NQK
Sbjct: 151 GLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRW------------------- 191
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
+NG DE KKLYC+YVA+GQKRSTVAQ+V+ L AM Y+
Sbjct: 192 --NNGS------------------DESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYS 231
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
IIV+ATAS+AAPLQYLAP++ ++GE+FRDNGKHALI+YDDLSKQAVAYRQ+SLLLRRPP
Sbjct: 232 IIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPP 291
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AK+SE G GSLTALPVIETQ GDVSAYIPTNVISITDGQ
Sbjct: 292 GREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQ 351
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLE ELFYKG
Sbjct: 352 IFLEAELFYKG------------------------------------------------- 362
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQ +A+KQ
Sbjct: 363 --IRPAINVGLSVSRVGSAAQVKALKQ 387
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/95 (85%), Positives = 86/95 (90%)
Query: 60 KAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGD 119
+AVAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLER+AK+SE G GSLTALPVIETQ GD
Sbjct: 276 QAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGD 335
Query: 120 VSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
VSAYIPTNVISITDGQIFLE ELFYK R +IN G
Sbjct: 336 VSAYIPTNVISITDGQIFLEAELFYKGIRPAINVG 370
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 77/124 (62%), Gaps = 10/124 (8%)
Query: 155 QLIIGDRQTGKTALAIDTIINQXXXXXXXXXXXXXXSAGIKAVDSLVPIGRGQRELIIGD 214
+LIIGDRQTGKTA+A+DTI+NQ K V +G+ +R +
Sbjct: 167 ELIIGDRQTGKTAVALDTILNQKRWNNGSDESK-------KLYCVYVAVGQ-KRSTVAQL 218
Query: 215 RQT--GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 272
QT A+ I+ + AAPLQYLAP++ ++GE+FRDNGKHALI+YDDLSKQAV
Sbjct: 219 VQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAV 278
Query: 273 AYRQ 276
AYRQ
Sbjct: 279 AYRQ 282
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 48/53 (90%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGMALNLEP VG+V+FG+DRL+KEG++VKRTG IVDVPVG LLGRVVDALG
Sbjct: 62 KGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALG 114
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 219/327 (66%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
G+KAVD+LVPIGRGQRELIIGDRQTGKTA+A+DTI+NQK
Sbjct: 151 GLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRW------------------- 191
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
+NG DE KKLYC+YVA+GQKRSTVAQ+V+ L AM Y+
Sbjct: 192 --NNGS------------------DESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYS 231
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
IIV+ATAS+AAPLQYLAP++ ++GE+FRDNGKHALI+YDDLSKQAVAYRQ+SLLLRRPP
Sbjct: 232 IIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPP 291
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AK+SE G GSLTALPVIETQ GDVSAYIPTNVISITDGQ
Sbjct: 292 GREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQ 351
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLE ELFYKG
Sbjct: 352 IFLEAELFYKG------------------------------------------------- 362
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQ +A+KQ
Sbjct: 363 --IRPAINVGLSVSRVGSAAQVKALKQ 387
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/95 (85%), Positives = 86/95 (90%)
Query: 60 KAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGD 119
+AVAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLER+AK+SE G GSLTALPVIETQ GD
Sbjct: 276 QAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGD 335
Query: 120 VSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
VSAYIPTNVISITDGQIFLE ELFYK R +IN G
Sbjct: 336 VSAYIPTNVISITDGQIFLEAELFYKGIRPAINVG 370
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 77/124 (62%), Gaps = 10/124 (8%)
Query: 155 QLIIGDRQTGKTALAIDTIINQXXXXXXXXXXXXXXSAGIKAVDSLVPIGRGQRELIIGD 214
+LIIGDRQTGKTA+A+DTI+NQ K V +G+ +R +
Sbjct: 167 ELIIGDRQTGKTAVALDTILNQKRWNNGSDESK-------KLYCVYVAVGQ-KRSTVAQL 218
Query: 215 RQT--GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 272
QT A+ I+ + AAPLQYLAP++ ++GE+FRDNGKHALI+YDDLSKQAV
Sbjct: 219 VQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAV 278
Query: 273 AYRQ 276
AYRQ
Sbjct: 279 AYRQ 282
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 48/53 (90%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGMALNLEP VG+V+FG+DRL+KEG++VKRTG IVDVPVG LLGRVVDALG
Sbjct: 62 KGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALG 114
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 219/327 (66%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
G+KAVD+LVPIGRGQRELIIGDRQTGKTA+A+DTI+NQK
Sbjct: 151 GLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRW------------------- 191
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
+NG DE KKLYC+YVA+GQKRSTVAQ+V+ L AM Y+
Sbjct: 192 --NNGS------------------DESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYS 231
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
IIV+ATAS+AAPLQYLAP++ ++GE+FRDNGKHALI+YDDLSKQAVAYRQ+SLLLRRPP
Sbjct: 232 IIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPP 291
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AK+SE G GSLTALPVIETQ GDVSAYIPTNVISITDGQ
Sbjct: 292 GREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQ 351
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLE ELFYKG
Sbjct: 352 IFLEAELFYKG------------------------------------------------- 362
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQ +A+KQ
Sbjct: 363 --IRPAINVGLSVSRVGSAAQVKALKQ 387
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/95 (85%), Positives = 86/95 (90%)
Query: 60 KAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGD 119
+AVAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLER+AK+SE G GSLTALPVIETQ GD
Sbjct: 276 QAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGD 335
Query: 120 VSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
VSAYIPTNVISITDGQIFLE ELFYK R +IN G
Sbjct: 336 VSAYIPTNVISITDGQIFLEAELFYKGIRPAINVG 370
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 77/124 (62%), Gaps = 10/124 (8%)
Query: 155 QLIIGDRQTGKTALAIDTIINQXXXXXXXXXXXXXXSAGIKAVDSLVPIGRGQRELIIGD 214
+LIIGDRQTGKTA+A+DTI+NQ K V +G+ +R +
Sbjct: 167 ELIIGDRQTGKTAVALDTILNQKRWNNGSDESK-------KLYCVYVAVGQ-KRSTVAQL 218
Query: 215 RQT--GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 272
QT A+ I+ + AAPLQYLAP++ ++GE+FRDNGKHALI+YDDLSKQAV
Sbjct: 219 VQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAV 278
Query: 273 AYRQ 276
AYRQ
Sbjct: 279 AYRQ 282
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 47/53 (88%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGMAL LEP VG+V+FG+DRL+KEG++VKRTG IVDVPVG LLGRVVDALG
Sbjct: 62 KGMALILEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALG 114
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 219/327 (66%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
G+KAVD+LVPIGRGQRELIIGDRQTGKTA+A+DTI+NQK
Sbjct: 127 GLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRW------------------- 167
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
+NG DE KKLYC+YVA+GQKRSTVAQ+V+ L AM Y+
Sbjct: 168 --NNGS------------------DESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYS 207
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
IIV+ATAS+AAPLQYLAP++ ++GE+FRDNGKHALI+YDDLSKQAVAYRQ+SLLLRRPP
Sbjct: 208 IIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPP 267
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AK+SE G GSLTALPVIETQ GDVSAYIPTNVISITDGQ
Sbjct: 268 GREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQ 327
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLE ELFYKG
Sbjct: 328 IFLEAELFYKG------------------------------------------------- 338
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQ +A+KQ
Sbjct: 339 --IRPAINVGLSVSRVGSAAQVKALKQ 363
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/95 (85%), Positives = 86/95 (90%)
Query: 60 KAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGD 119
+AVAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLER+AK+SE G GSLTALPVIETQ GD
Sbjct: 252 QAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGD 311
Query: 120 VSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
VSAYIPTNVISITDGQIFLE ELFYK R +IN G
Sbjct: 312 VSAYIPTNVISITDGQIFLEAELFYKGIRPAINVG 346
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 77/124 (62%), Gaps = 10/124 (8%)
Query: 155 QLIIGDRQTGKTALAIDTIINQXXXXXXXXXXXXXXSAGIKAVDSLVPIGRGQRELIIGD 214
+LIIGDRQTGKTA+A+DTI+NQ K V +G+ +R +
Sbjct: 143 ELIIGDRQTGKTAVALDTILNQKRWNNGSDESK-------KLYCVYVAVGQ-KRSTVAQL 194
Query: 215 RQT--GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 272
QT A+ I+ + AAPLQYLAP++ ++GE+FRDNGKHALI+YDDLSKQAV
Sbjct: 195 VQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAV 254
Query: 273 AYRQ 276
AYRQ
Sbjct: 255 AYRQ 258
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 48/53 (90%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGMALNLEP VG+V+FG+DRL+KEG++VKRTG IVDVPVG LLGRVVDALG
Sbjct: 38 KGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALG 90
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 219/327 (66%), Gaps = 90/327 (27%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
G+KAVD+LVPIGRGQRELIIGDRQTGKTA+A+DTI+NQK
Sbjct: 126 GLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRW------------------- 166
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
+NG DE KKLYC+YVA+GQKRSTVAQ+V+ L AM Y+
Sbjct: 167 --NNGS------------------DESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYS 206
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
IIV+ATAS+AAPLQYLAP++ ++GE+FRDNGKHALI+YDDLSKQAVAYRQ+SLLLRRPP
Sbjct: 207 IIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPP 266
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AK+SE G GSLTALPVIETQ GDVSAYIPTNVISITDGQ
Sbjct: 267 GREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQ 326
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLE ELFYKG
Sbjct: 327 IFLEAELFYKG------------------------------------------------- 337
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQ 519
IRPAINVGLSVSRVGSAAQ +A+KQ
Sbjct: 338 --IRPAINVGLSVSRVGSAAQVKALKQ 362
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/95 (85%), Positives = 86/95 (90%)
Query: 60 KAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGD 119
+AVAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLER+AK+SE G GSLTALPVIETQ GD
Sbjct: 251 QAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGD 310
Query: 120 VSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
VSAYIPTNVISITDGQIFLE ELFYK R +IN G
Sbjct: 311 VSAYIPTNVISITDGQIFLEAELFYKGIRPAINVG 345
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 77/124 (62%), Gaps = 10/124 (8%)
Query: 155 QLIIGDRQTGKTALAIDTIINQXXXXXXXXXXXXXXSAGIKAVDSLVPIGRGQRELIIGD 214
+LIIGDRQTGKTA+A+DTI+NQ K V +G+ +R +
Sbjct: 142 ELIIGDRQTGKTAVALDTILNQKRWNNGSDESK-------KLYCVYVAVGQ-KRSTVAQL 193
Query: 215 RQT--GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 272
QT A+ I+ + AAPLQYLAP++ ++GE+FRDNGKHALI+YDDLSKQAV
Sbjct: 194 VQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAV 253
Query: 273 AYRQ 276
AYRQ
Sbjct: 254 AYRQ 257
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 48/53 (90%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGMALNLEP VG+V+FG+DRL+KEG++VKRTG IVDVPVG LLGRVVDALG
Sbjct: 37 KGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALG 89
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 178/333 (53%), Positives = 209/333 (62%), Gaps = 99/333 (29%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GIKA+DS++PIGRGQRELIIGDRQTGKT +AIDTIINQK
Sbjct: 149 GIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG-------------------- 188
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
+ + CIYVAIGQK+STVA +V+ L A+ YT
Sbjct: 189 ---------------------------QDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
I+V+A+AS+ APL YLAPY+GCAMGE+F GKHAL++YDDLSKQA AYR++SLLLRRPP
Sbjct: 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPP 281
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AK+S+ GGGSLTALP IETQAGDVSAYIPTNVISITDGQ
Sbjct: 282 GREAYPGDVFYLHSRLLERAAKLSDEKGGGSLTALPFIETQAGDVSAYIPTNVISITDGQ 341
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFLE++LFY G
Sbjct: 342 IFLESDLFYSG------------------------------------------------- 352
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQT-GKIR 524
+RPA+NVG+SVSRVG AAQ +AMK+ G +R
Sbjct: 353 --VRPAVNVGISVSRVGGAAQIKAMKKVAGTLR 383
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/95 (80%), Positives = 86/95 (90%)
Query: 60 KAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGD 119
+A AYR++SLLLRRPPGREAYPGDVFYLHSRLLER+AK+S+ GGGSLTALP IETQAGD
Sbjct: 266 QAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGSLTALPFIETQAGD 325
Query: 120 VSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
VSAYIPTNVISITDGQIFLE++LFY R ++N G
Sbjct: 326 VSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVG 360
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 43/61 (70%)
Query: 434 FLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDAL 493
LE E GMA NLE DNVGVV+ G I+EG VKRTG I++VPVGE LLGRVV+ L
Sbjct: 52 LLEFENGVMGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPL 111
Query: 494 G 494
G
Sbjct: 112 G 112
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 318 bits (816), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 174/333 (52%), Positives = 205/333 (61%), Gaps = 99/333 (29%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GIKA+D+LVPIGRGQRELIIGDRQTGKT++AIDTIINQK
Sbjct: 149 GIKAIDALVPIGRGQRELIIGDRQTGKTSVAIDTIINQKD-------------------- 188
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
+ + CIYVAIGQK STVA +V+ L GA YT
Sbjct: 189 ---------------------------QNMICIYVAIGQKESTVATVVETLAKHGAPDYT 221
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
I+V+A+AS APL +LAPY+G AMGE+F GKH L++ DDLSKQA AYRQ+SLLLRRPP
Sbjct: 222 IVVTASASQPAPLLFLAPYAGVAMGEYFMIMGKHVLVVIDDLSKQAAAYRQLSLLLRRPP 281
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGD+FYLHSRLLER+AK+S+A GGGSLTALP +ETQAGD+SAYIPTNVISITDGQ
Sbjct: 282 GREAYPGDIFYLHSRLLERAAKLSDAKGGGSLTALPFVETQAGDISAYIPTNVISITDGQ 341
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFL+++LF+ G
Sbjct: 342 IFLQSDLFFSG------------------------------------------------- 352
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQT-GKIR 524
+RPAIN GLSVSRVG AAQ +AMK+ G +R
Sbjct: 353 --VRPAINAGLSVSRVGGAAQIKAMKKVAGTLR 383
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 74/95 (77%), Positives = 87/95 (91%)
Query: 60 KAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGD 119
+A AYRQ+SLLLRRPPGREAYPGD+FYLHSRLLER+AK+S+A GGGSLTALP +ETQAGD
Sbjct: 266 QAAAYRQLSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSDAKGGGSLTALPFVETQAGD 325
Query: 120 VSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
+SAYIPTNVISITDGQIFL+++LF+ R +IN G
Sbjct: 326 ISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAG 360
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 67/125 (53%), Gaps = 20/125 (16%)
Query: 155 QLIIGDRQTGKTALAIDTIINQXXXXXXXXXXXXXXSAGIKAVDSLVPIGRGQRELIIG- 213
+LIIGDRQTGKT++AIDTIINQ + + GQ+E +
Sbjct: 165 ELIIGDRQTGKTSVAIDTIINQKDQNMI-----------------CIYVAIGQKESTVAT 207
Query: 214 --DRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+ A ++ + APL +LAPY+G AMGE+F GKH L++ DDLSKQA
Sbjct: 208 VVETLAKHGAPDYTIVVTASASQPAPLLFLAPYAGVAMGEYFMIMGKHVLVVIDDLSKQA 267
Query: 272 VAYRQ 276
AYRQ
Sbjct: 268 AAYRQ 272
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 42/52 (80%)
Query: 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
GMALNLE +NVG+V+ G IKEGD V+RTG I++VPVGE L+GRVV+ LG
Sbjct: 61 GMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPLG 112
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 313 bits (801), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 179/345 (51%), Positives = 212/345 (61%), Gaps = 110/345 (31%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
G KAVDS++PIGRGQRELIIGDRQTGKTALAID IINQ
Sbjct: 149 GYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQ---------------------- 186
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
RD+G + CIYVAIGQK ST++ +V++L + GA+ T
Sbjct: 187 -RDSG------------------------IKCIYVAIGQKASTISNVVRKLEEHGALANT 221
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
I+V ATAS++A LQYLAPY+GCAMGE+FRD G+ ALIIYDDLSKQAVAYRQ+SLLLRRPP
Sbjct: 222 IVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPP 281
Query: 373 GREAYPGDVFYLHSRLLERSAKMS----------EAHGG-GSLTALPVIETQAGDVSAYI 421
GREA+PGDVFYLHSRLLER+A+++ E G GSLTALP+IETQAGDVSA++
Sbjct: 282 GREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFV 341
Query: 422 PTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPV 481
PTNVISITDGQIFLET LF G+
Sbjct: 342 PTNVISITDGQIFLETNLFNAGI------------------------------------- 364
Query: 482 GEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAMKQ-TGKIRS 525
RPA+N G+SVSRVG AAQT+ MK+ +G IR+
Sbjct: 365 --------------RPAVNPGISVSRVGGAAQTKIMKKLSGGIRT 395
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 85/106 (80%), Gaps = 11/106 (10%)
Query: 60 KAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMS----------EAHGG-GSLT 108
+AVAYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER+A+++ E G GSLT
Sbjct: 266 QAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLT 325
Query: 109 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
ALP+IETQAGDVSA++PTNVISITDGQIFLET LF R ++N G
Sbjct: 326 ALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPG 371
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 36/51 (70%)
Query: 444 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
+ALNLE D+VG VV G + EG VK TG I++VPVG LLGRVV+ LG
Sbjct: 62 IALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLG 112
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/328 (50%), Positives = 198/328 (60%), Gaps = 98/328 (29%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GIKA+DS +PIGRGQRELIIGDRQTGKTA+AIDTIINQK
Sbjct: 162 GIKAIDSXIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG-------------------- 201
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
+ +YCIYVAIGQK+S +A+I+ +L GA YT
Sbjct: 202 ---------------------------QGVYCIYVAIGQKKSAIARIIDKLRQYGAXEYT 234
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
+V A+ASD A LQY+APY+GCA GE+F +G+ AL++YDDLSK AVAYRQ+SLL RRPP
Sbjct: 235 TVVVASASDPASLQYIAPYAGCAXGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLXRRPP 294
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGD+FYLHSRLLER+ ++++ GGGSLTALP++ETQA D+SAYIPTNVISITDGQ
Sbjct: 295 GREAYPGDIFYLHSRLLERAVRLNDKLGGGSLTALPIVETQANDISAYIPTNVISITDGQ 354
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
I+LE LFY G
Sbjct: 355 IYLEPGLFYAGQ------------------------------------------------ 366
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQT 520
RPAINVGLSVSRVG +AQ +A KQ
Sbjct: 367 ---RPAINVGLSVSRVGGSAQIKAXKQV 391
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/94 (74%), Positives = 82/94 (87%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
AVAYRQ+SLL RRPPGREAYPGD+FYLHSRLLER+ ++++ GGGSLTALP++ETQA D+
Sbjct: 280 AVAYRQLSLLXRRPPGREAYPGDIFYLHSRLLERAVRLNDKLGGGSLTALPIVETQANDI 339
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
SAYIPTNVISITDGQI+LE LFY R +IN G
Sbjct: 340 SAYIPTNVISITDGQIYLEPGLFYAGQRPAINVG 373
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 378 PGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLET 437
PG++ +++LE K E T VI+ G AY N + +++ F+ET
Sbjct: 17 PGEI----TKVLEEKIKSFEEKIDLEDTG-KVIQVGDGIARAY-GLNKVXVSELVEFVET 70
Query: 438 ELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
+ KG+A NLE DNVG+++ G + IKEG V+R I++VPVGE+LLGRVV+ LG
Sbjct: 71 GV--KGVAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLG 125
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 304 bits (779), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 166/333 (49%), Positives = 199/333 (59%), Gaps = 99/333 (29%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
G+ A+D+++P+GRGQRELIIGDRQTGKTA+A DTI+NQ+
Sbjct: 150 GLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQG-------------------- 189
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
+ + C+YVAIGQK S+VAQ+V + GAM YT
Sbjct: 190 ---------------------------QNVICVYVAIGQKASSVAQVVTNFQERGAMEYT 222
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
I+V+ TA A LQYLAPY+G A+ E+F +H LIIYDDLSKQA AYRQMSLLLRRPP
Sbjct: 223 IVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPP 282
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GREAYPGDVFYLHSRLLER+AK+S G GS+TALP++ETQAGDVSAYIPTNVISITDGQ
Sbjct: 283 GREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQ 342
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
IFL +LF G+
Sbjct: 343 IFLSADLFNAGI------------------------------------------------ 354
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQT-GKIR 524
RPAINVG+SVSRVGSAAQ +AMK+ GK++
Sbjct: 355 ---RPAINVGISVSRVGSAAQIKAMKKVAGKLK 384
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/95 (77%), Positives = 82/95 (86%)
Query: 60 KAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGD 119
+A AYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AK+S G GS+TALP++ETQAGD
Sbjct: 267 QAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGD 326
Query: 120 VSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
VSAYIPTNVISITDGQIFL +LF R +IN G
Sbjct: 327 VSAYIPTNVISITDGQIFLSADLFNAGIRPAINVG 361
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G+ALNLE +NVGVV+ G+ +I+EG VK TG I +PV E LGRV++AL
Sbjct: 62 GIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALA 113
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 289 IGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYL--APYSGCAMGEFFRDNGKH 346
IG++ V ++ + +++++A A D +PL + A Y+ + E FRD G+H
Sbjct: 191 IGERGREVKDFIENILGPDGRARSVVIAAPA-DVSPLLRMQGAAYA-TRIAEDFRDRGQH 248
Query: 347 ALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTA 406
L+I D L++ A+A R+++L + PP + YP VF L+ER+ + HGGGS+TA
Sbjct: 249 VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAG--NGIHGGGSITA 306
Query: 407 LPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 443
+ T+ D I + +I DG I L L G
Sbjct: 307 FYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAG 343
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A+A R+++L + PP + YP VF L+ER+ + HGGGS+TA + T+ D
Sbjct: 260 AMAQREIALAIGEPPATKGYPPSVFAKLPALVERAG--NGIHGGGSITAFYTVLTEGDDQ 317
Query: 121 SAYIPTNVISITDGQIFLETEL 142
I + +I DG I L L
Sbjct: 318 QDPIADSARAILDGHIVLSRRL 339
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 46/141 (32%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALA---------------------------ID 225
G++A+++L+ +GRGQR + GK+ L I+
Sbjct: 144 GVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIE 203
Query: 226 TIIN-----QKSIYAAP--LQYLAPYSGCA----MGEFFRDNGKHALIIYDDLSKQAVAY 274
I+ + + AAP + L G A + E FRD G+H L+I D L++ A+A
Sbjct: 204 NILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ 263
Query: 275 RQDEKKKLYCIYVAIGQKRST 295
R+ I +AIG+ +T
Sbjct: 264 RE--------IALAIGEPPAT 276
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 3/169 (1%)
Query: 277 DEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
D ++ AIG ++ +GA+ +++ A+D A + P
Sbjct: 179 DSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTA 238
Query: 337 GEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKM 395
E+ + G H L+I D++ A A R++S R PGR YPG ++ + L ER+ ++
Sbjct: 239 AEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRI 298
Query: 396 SEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGM 444
GS+T +P++ D + IP IT+GQI L EL+ G+
Sbjct: 299 RGLK--GSVTQIPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGI 345
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R++S R PGR YPG ++ + L ER+ ++ GS+T +P++ D
Sbjct: 261 AEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGLK--GSVTQIPILTMPEDDK 318
Query: 121 SAYIPTNVISITDGQIFLETELF 143
+ IP IT+GQI L EL+
Sbjct: 319 THPIPDLTGYITEGQIILTRELY 341
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 442 KGMALNLEPDNVGVVVF-GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500
+G L ++ D V +F G + + V+ G + + V ED++GRV D LG RP N
Sbjct: 48 RGQVLEVQEDKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLG-RPKDN 106
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 284 CIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-D 342
++ A+G + +GA+ ++ A D A + + P E+ +
Sbjct: 187 VVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYE 246
Query: 343 NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGG 402
+G H L+I D++ A A RQM PGR YPG ++ + L ER+ + A G
Sbjct: 247 HGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAK--G 304
Query: 403 SLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGM 444
S+T +P++ D++ IP IT+GQI + EL KG+
Sbjct: 305 SVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGI 346
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A RQM PGR YPG ++ + L ER+ + A G S+T +P++ D+
Sbjct: 262 AEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKG--SVTQIPILSMPGDDI 319
Query: 121 SAYIPTNVISITDGQIFLETELFYK 145
+ IP IT+GQI + EL K
Sbjct: 320 THPIPDLSGYITEGQIVVARELHRK 344
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 284 CIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-D 342
++ A+G + +GA+ ++ A D A + + P E+ +
Sbjct: 178 VVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYE 237
Query: 343 NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGG 402
+G H L+I D++ A A RQM PGR YPG ++ + L ER+ + A G
Sbjct: 238 HGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAK--G 295
Query: 403 SLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGM 444
S+T +P++ D++ IP IT+GQI + EL KG+
Sbjct: 296 SVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGI 337
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A RQM PGR YPG ++ + L ER+ + A G S+T +P++ D+
Sbjct: 253 AEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKG--SVTQIPILSMPGDDI 310
Query: 121 SAYIPTNVISITDGQIFLETELFYK 145
+ IP IT+GQI + EL K
Sbjct: 311 THPIPDLSGYITEGQIVVARELHRK 335
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 284 CIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-D 342
++ A+G + +GA+ ++ A D A + + P E+ +
Sbjct: 178 VVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYE 237
Query: 343 NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGG 402
+G H L+I D++ A A RQM PGR YPG ++ + L ER+ + A G
Sbjct: 238 HGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAK--G 295
Query: 403 SLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGM 444
S+T +P++ D++ IP IT+GQI + EL KG+
Sbjct: 296 SVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGI 337
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A RQM PGR YPG ++ + L ER+ + A G S+T +P++ D+
Sbjct: 253 AEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKG--SVTQIPILSMPGDDI 310
Query: 121 SAYIPTNVISITDGQIFLETELFYK 145
+ IP IT+GQI + EL K
Sbjct: 311 THPIPDLSGYITEGQIVVARELHRK 335
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 284 CIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-D 342
++ A+G + +GA+ ++ A D A + + P E+ +
Sbjct: 187 VVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYE 246
Query: 343 NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGG 402
+G H L+I D++ A A RQM PGR YPG ++ + L ER+ + A G
Sbjct: 247 HGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAK--G 304
Query: 403 SLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGM 444
S+T +P++ D++ IP IT+GQI + EL KG+
Sbjct: 305 SVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGI 346
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A RQM PGR YPG ++ + L ER+ + A G S+T +P++ D+
Sbjct: 262 AEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKG--SVTQIPILSMPGDDI 319
Query: 121 SAYIPTNVISITDGQIFLETELFYK 145
+ IP IT+GQI + EL K
Sbjct: 320 THPIPDLSGYITEGQIVVARELHRK 344
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 284 CIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-D 342
++ A+G + +GA+ ++ A D A + + P E+ +
Sbjct: 178 VVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYE 237
Query: 343 NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGG 402
+G H L+I D++ A A RQM PGR YPG ++ + L ER+ + A G
Sbjct: 238 HGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAK--G 295
Query: 403 SLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGM 444
S+T +P++ D++ IP IT+GQI + EL KG+
Sbjct: 296 SVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGI 337
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A RQM PGR YPG ++ + L ER+ + A G S+T +P++ D+
Sbjct: 253 AEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKG--SVTQIPILSMPGDDI 310
Query: 121 SAYIPTNVISITDGQIFLETELFYK 145
+ IP IT+GQI + EL K
Sbjct: 311 THPIPDLSGYITEGQIVVARELHRK 335
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 3/169 (1%)
Query: 277 DEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
D ++ AIG + +GA+ ++ A+D A + P
Sbjct: 179 DSSDDFAVVFAAIGITFEEAEFFXEDFRQTGAIDRSVXFXNLANDPAIERIATPRXALTA 238
Query: 337 GEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKM 395
E+ + G H L+I D + A A R++S R PGR YPG ++ + L ER+ ++
Sbjct: 239 AEYLAYEKGXHVLVIXTDXTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRI 298
Query: 396 SEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGM 444
GS+T +P++ D + IP IT+GQI L EL+ G+
Sbjct: 299 RGLK--GSVTQIPILTXPEDDKTHPIPDLTGYITEGQIILTRELYKSGI 345
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R++S R PGR YPG ++ + L ER+ ++ GS+T +P++ D
Sbjct: 261 AEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGLK--GSVTQIPILTXPEDDK 318
Query: 121 SAYIPTNVISITDGQIFLETELF 143
+ IP IT+GQI L EL+
Sbjct: 319 THPIPDLTGYITEGQIILTRELY 341
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 442 KGMALNLEPDNVGVVVF-GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500
+G L ++ D V +F G + + V+ G + + V ED +GRV D LG RP N
Sbjct: 48 RGQVLEVQEDKAXVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDXIGRVFDGLG-RPKDN 106
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 16/158 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
+YV G++ + + +V T M T++++ T++ + + Y+G +
Sbjct: 261 VVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNMPVAAREASIYTGITI 320
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSA 393
E+FRD G I+ D S+ A A R+MS L PG E YP YL SRL ERS
Sbjct: 321 AEYFRDMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPA---YLGSRLAEYYERSG 377
Query: 394 K---MSEAHGGGSLTALPVIETQAGDVSAYIPTNVISI 428
+ + GS+TA+ + GD+S + N + +
Sbjct: 378 RVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRV 415
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSAK---MSEAHGGGSLTALPVIE 114
A A R+MS L PG E YP YL SRL ERS + + GS+TA+ +
Sbjct: 342 AEALREMSGRLEEMPGDEGYPA---YLGSRLAEYYERSGRVIALGSDQREGSITAISAVS 398
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQ 155
GD+S + N + + L++ L K SIN Q
Sbjct: 399 PSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQ 439
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 197 VDSLVPIGRGQR------------ELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPY 244
VD +V +G G+R ELI D TG++ + +I S + + Y
Sbjct: 258 VDLVVYVGCGERGNEMTDVVNEFPELI--DPNTGESLMERTVLIANTSNMPVAAREASIY 315
Query: 245 SGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276
+G + E+FRD G I+ D S+ A A R+
Sbjct: 316 TGITIAEYFRDMGYDVAIMADSTSRWAEALRE 347
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 84/175 (48%), Gaps = 3/175 (1%)
Query: 277 DEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
++++ ++ A+G + ++ ++ +GA+ +++ A D + L P +
Sbjct: 182 EKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTV 241
Query: 337 GEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKM 395
E+ ++ H L+I D++ + A R++ PGR YPG ++ + + ER+ +
Sbjct: 242 AEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVV 301
Query: 396 SEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEP 450
G S+T +P++ D + IP IT+GQI L EL KG+ ++P
Sbjct: 302 EGKKG--SVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDP 354
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 63 AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSA 122
A R++ PGR YPG ++ + + ER+ + G S+T +P++ D +
Sbjct: 266 ALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKG--SVTQIPILSMPDDDRTH 323
Query: 123 YIPTNVISITDGQIFLETELFYK 145
IP IT+GQI L EL K
Sbjct: 324 PIPDLTGYITEGQIQLSRELHRK 346
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 289 IGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYL-APYSGCAMGEFFRDNGKHA 347
IG++ V + + L S ++V T SD L+ + A ++ + E+FRD GK+
Sbjct: 105 IGERGREVNEFLALLPQSTLSKCVLVV--TTSDRPALERMKAAFTATTIAEYFRDQGKNV 162
Query: 348 LIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTAL 407
L++ D +++ A A R + L P R +P VF +LLER+ + GS+TA+
Sbjct: 163 LLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPK----GSITAI 218
Query: 408 PVIETQAGDVSAYIPTNVISITDGQIFLETEL 439
+ ++ +V+ I V SI DG I L EL
Sbjct: 219 YTVLLESDNVNDPIGDEVRSILDGHIVLTREL 250
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R + L P R +P VF +LLER+ + GS+TA+ + ++ +V
Sbjct: 173 ARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPK----GSITAIYTVLLESDNV 228
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
+ I V SI DG I L EL + +I+ G
Sbjct: 229 NDPIGDEVRSILDGHIVLTRELAEENHFPAIDIG 262
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 242 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYR 275
A ++ + E+FRD GK+ L++ D +++ A A R
Sbjct: 144 AAFTATTIAEYFRDQGKNVLLMMDSVTRYARAAR 177
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 3/175 (1%)
Query: 277 DEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
++++ ++ A+G + ++ ++ +GA+ +++ A D + L P +
Sbjct: 182 EKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTV 241
Query: 337 GEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKM 395
E+ ++ H L+I D++ A R++ PGR YPG ++ + + ER+ +
Sbjct: 242 AEYLAFEHDYHVLVILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVV 301
Query: 396 SEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEP 450
G S+T +P++ D + IP IT+GQI L EL KG+ ++P
Sbjct: 302 EGKKG--SVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDP 354
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 63 AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSA 122
A R++ PGR YPG ++ + + ER+ + G S+T +P++ D +
Sbjct: 266 ALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKG--SVTQIPILSMPDDDRTH 323
Query: 123 YIPTNVISITDGQIFLETELFYK 145
IP IT+GQI L EL K
Sbjct: 324 PIPDLTGYITEGQIQLSRELHRK 346
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 16/158 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
+YV G++ + +V T T++++ T++ + + Y+G +
Sbjct: 261 VVYVGCGERGNEXTDVVNEFPELIDPNTGESLXERTVLIANTSNXPVAAREASIYTGITI 320
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSA 393
E+FRD G I D S+ A A R+ S L PG E YP YL SRL ERS
Sbjct: 321 AEYFRDXGYDVAIXADSTSRWAEALREXSGRLEEXPGDEGYPA---YLGSRLAEYYERSG 377
Query: 394 K---MSEAHGGGSLTALPVIETQAGDVSAYIPTNVISI 428
+ + GS+TA+ + GD+S + N + +
Sbjct: 378 RVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRV 415
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSAK---MSEAHGGGSLTALPVIE 114
A A R+ S L PG E YP YL SRL ERS + + GS+TA+ +
Sbjct: 342 AEALREXSGRLEEXPGDEGYPA---YLGSRLAEYYERSGRVIALGSDQREGSITAISAVS 398
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQ 155
GD+S + N + + L++ L K SIN Q
Sbjct: 399 PSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQ 439
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 197 VDSLVPIGRGQR------------ELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPY 244
VD +V +G G+R ELI D TG++ +I S + + Y
Sbjct: 258 VDLVVYVGCGERGNEXTDVVNEFPELI--DPNTGESLXERTVLIANTSNXPVAAREASIY 315
Query: 245 SGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276
+G + E+FRD G I D S+ A A R+
Sbjct: 316 TGITIAEYFRDXGYDVAIXADSTSRWAEALRE 347
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
IY+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 256 VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITI 315
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------ 390
E+FRD G ++ D S+ A A R++S L PG E YP YL S+L E
Sbjct: 316 AEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAG 372
Query: 391 RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
R + + GS++ + + GD S + N + +
Sbjct: 373 RVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 411
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+ D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A
Sbjct: 278 LKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337
Query: 272 VAYRQ 276
A R+
Sbjct: 338 EALRE 342
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------RSAKMSEAHGGGSLTALPVIE 114
A A R++S L PG E YP YL S+L E R + + GS++ + +
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 393
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINC 153
GD S + N + + L+ +L + +IN
Sbjct: 394 PPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINW 432
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
IY+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 256 VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITI 315
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------ 390
E+FRD G ++ D S+ A A R++S L PG E YP YL S+L E
Sbjct: 316 AEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAG 372
Query: 391 RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
R + + GS++ + + GD S + N + +
Sbjct: 373 RVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 411
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+ D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A
Sbjct: 278 LKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337
Query: 272 VAYRQ 276
A R+
Sbjct: 338 EALRE 342
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------RSAKMSEAHGGGSLTALPVIE 114
A A R++S L PG E YP YL S+L E R + + GS++ + +
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 393
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINC 153
GD S + N + + L+ +L + +IN
Sbjct: 394 PPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINW 432
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
IY+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 256 VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITI 315
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------ 390
E+FRD G ++ D S+ A A R++S L PG E YP YL S+L E
Sbjct: 316 AEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAG 372
Query: 391 RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
R + + GS++ + + GD S + N + +
Sbjct: 373 RVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 411
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+ D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A
Sbjct: 278 LKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337
Query: 272 VAYRQ 276
A R+
Sbjct: 338 EALRE 342
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------RSAKMSEAHGGGSLTALPVIE 114
A A R++S L PG E YP YL S+L E R + + GS++ + +
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 393
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINC 153
GD S + N + + L+ +L + +IN
Sbjct: 394 PPGGDFSEPVVQNTLRVVKVFWALDADLARRRHWPAINW 432
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
IY+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 256 VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITI 315
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------ 390
E+FRD G ++ D S+ A A R++S L PG E YP YL S+L E
Sbjct: 316 AEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAG 372
Query: 391 RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
R + + GS++ + + GD S + N + +
Sbjct: 373 RVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 411
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+ D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A
Sbjct: 278 LKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337
Query: 272 VAYRQ 276
A R+
Sbjct: 338 EALRE 342
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------RSAKMSEAHGGGSLTALPVIE 114
A A R++S L PG E YP YL S+L E R + + GS++ + +
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 393
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINC 153
GD S + N + + L+ +L + +IN
Sbjct: 394 PPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINW 432
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
IY+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 256 VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITI 315
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------ 390
E+FRD G ++ D S+ A A R++S L PG E YP YL S+L E
Sbjct: 316 AEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAG 372
Query: 391 RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
R + + GS++ + + GD S + N + +
Sbjct: 373 RVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 411
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+ D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A
Sbjct: 278 LKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337
Query: 272 VAYRQ 276
A R+
Sbjct: 338 EALRE 342
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------RSAKMSEAHGGGSLTALPVIE 114
A A R++S L PG E YP YL S+L E R + + GS++ + +
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 393
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINC 153
GD S + N + + L+ +L + +IN
Sbjct: 394 PPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINW 432
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
IY+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 256 VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITI 315
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------ 390
E+FRD G ++ D S+ A A R++S L PG E YP YL S+L E
Sbjct: 316 AEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAG 372
Query: 391 RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
R + + GS++ + + GD S + N + +
Sbjct: 373 RVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 411
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+ D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A
Sbjct: 278 LKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337
Query: 272 VAYRQ 276
A R+
Sbjct: 338 EALRE 342
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------RSAKMSEAHGGGSLTALPVIE 114
A A R++S L PG E YP YL S+L E R + + GS++ + +
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 393
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINC 153
GD S + N + + L+ +L + +IN
Sbjct: 394 PPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINW 432
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
IY+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 256 VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITI 315
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------ 390
E+FRD G ++ D S+ A A R++S L PG E YP YL S+L E
Sbjct: 316 AEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAG 372
Query: 391 RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
R + + GS++ + + GD S + N + +
Sbjct: 373 RVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 411
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+ D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A
Sbjct: 278 LKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337
Query: 272 VAYRQ 276
A R+
Sbjct: 338 EALRE 342
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------RSAKMSEAHGGGSLTALPVIE 114
A A R++S L PG E YP YL S+L E R + + GS++ + +
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 393
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINC 153
GD S + N + + L+ +L + +IN
Sbjct: 394 PPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINW 432
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
IY+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 256 VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITI 315
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------ 390
E+FRD G ++ D S+ A A R++S L PG E YP YL S+L E
Sbjct: 316 AEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAG 372
Query: 391 RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
R + + GS++ + + GD S + N + +
Sbjct: 373 RVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 411
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+ D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A
Sbjct: 278 LKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337
Query: 272 VAYRQ 276
A R+
Sbjct: 338 EALRE 342
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------RSAKMSEAHGGGSLTALPVIE 114
A A R++S L PG E YP YL S+L E R + + GS++ + +
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 393
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINC 153
GD S + N + + L+ +L + +IN
Sbjct: 394 PPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINW 432
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
IY+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 256 VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITI 315
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------ 390
E+FRD G ++ D S+ A A R++S L PG E YP YL S+L E
Sbjct: 316 AEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAG 372
Query: 391 RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
R + + GS++ + + GD S + N + +
Sbjct: 373 RVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 411
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+ D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A
Sbjct: 278 LKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337
Query: 272 VAYRQ 276
A R+
Sbjct: 338 EALRE 342
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------RSAKMSEAHGGGSLTALPVIE 114
A A R++S L PG E YP YL S+L E R + + GS++ + +
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 393
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINC 153
GD S + N + + L+ +L + +IN
Sbjct: 394 PPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINW 432
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
IY+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 256 VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITI 315
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------ 390
E+FRD G ++ D S+ A A R++S L PG E YP YL S+L E
Sbjct: 316 AEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAG 372
Query: 391 RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
R + + GS++ + + GD S + N + +
Sbjct: 373 RVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 411
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+ D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A
Sbjct: 278 LKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337
Query: 272 VAYRQ 276
A R+
Sbjct: 338 EALRE 342
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------RSAKMSEAHGGGSLTALPVIE 114
A A R++S L PG E YP YL S+L E R + + GS++ + +
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 393
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINC 153
GD S + N + + L+ +L + +IN
Sbjct: 394 PPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINW 432
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
IY+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 256 VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITI 315
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------ 390
E+FRD G ++ D S+ A A R++S L PG E YP YL S+L E
Sbjct: 316 AEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAG 372
Query: 391 RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
R + + GS++ + + GD S + N + +
Sbjct: 373 RVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 411
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+ D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A
Sbjct: 278 LKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337
Query: 272 VAYRQ 276
A R+
Sbjct: 338 EALRE 342
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------RSAKMSEAHGGGSLTALPVIE 114
A A R++S L PG E YP YL S+L E R + + GS++ + +
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 393
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINC 153
GD S + N + + L+ +L + +IN
Sbjct: 394 PPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINW 432
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 284 CIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAM 336
IY+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 256 VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITI 315
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------ 390
E+FRD G ++ D S+ A A R++S L PG E YP YL S+L E
Sbjct: 316 AEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAG 372
Query: 391 RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
R + + GS++ + + GD S + N + +
Sbjct: 373 RVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 411
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+ D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A
Sbjct: 278 LKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWA 337
Query: 272 VAYRQ 276
A R+
Sbjct: 338 EALRE 342
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------RSAKMSEAHGGGSLTALPVIE 114
A A R++S L PG E YP YL S+L E R + + GS++ + +
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 393
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINC 153
GD S + N + + L+ +L + +IN
Sbjct: 394 PPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINW 432
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 284 CIYVAIGQKRSTVAQIV---KRLTDSGA----MGYTIIVSATASDAAPLQYLAPYSGCAM 336
+YV G++ + + ++ LTD M T++++ T++ + + Y G +
Sbjct: 250 VVYVGCGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTI 309
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSA 393
E+FRD G ++ D S+ A A R++S L P E YP YL +RL ER+
Sbjct: 310 AEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPP---YLAARLAAFYERAG 366
Query: 394 KMSEAHG-GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYK 442
K+ G G++T + + GD+S + + + I L+ L ++
Sbjct: 367 KVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFR 416
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 214 DRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVA 273
D +TG + +I S + + Y G + E+FRD G ++ D S+ A A
Sbjct: 274 DPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEA 333
Query: 274 YRQ 276
R+
Sbjct: 334 LRE 336
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSAKMSEAHG-GGSLTALPVIETQ 116
A A R++S L P E YP YL +RL ER+ K+ G G++T + +
Sbjct: 331 AEALREISSRLEEMPAEEGYPP---YLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPP 387
Query: 117 AGDVSAYIPTNVISITDGQIFLETELFYKVDRGSIN 152
GD+S + + + I L+ L ++ +IN
Sbjct: 388 GGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAIN 423
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 284 CIYVAIGQKRSTVAQIV---KRLTDSGA----MGYTIIVSATASDAAPLQYLAPYSGCAM 336
+YV G++ + + ++ LTD M T++++ T++ + + Y G +
Sbjct: 250 VVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTI 309
Query: 337 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSA 393
E+FRD G ++ D S+ A A R++S L P E YP YL +RL ER+
Sbjct: 310 AEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPP---YLAARLAAFYERAG 366
Query: 394 KMSEAHG-GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYK 442
K+ G G++T + + GD+S + + + I L+ L ++
Sbjct: 367 KVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFR 416
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 198 DSLVPIGRGQR--ELI--------IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGC 247
D +V +G G+R E+ + D +TG + +I S + + Y G
Sbjct: 248 DVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGV 307
Query: 248 AMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276
+ E+FRD G ++ D S+ A A R+
Sbjct: 308 TIAEYFRDQGFSVALMADSTSRWAEALRE 336
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSAKMSEAHG-GGSLTALPVIETQ 116
A A R++S L P E YP YL +RL ER+ K+ G G++T + +
Sbjct: 331 AEALREISSRLEEMPAEEGYPP---YLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPP 387
Query: 117 AGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINC 153
GD+S + + + I L+ L ++ +IN
Sbjct: 388 GGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINW 424
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 284 CIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN 343
++ +G++ + + DSG + T +V ++ + +G M E+FRD
Sbjct: 183 SVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDE 242
Query: 344 -GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGG 402
G+ L+ D++ + A ++S LL R P Y + +L ER ++ G
Sbjct: 243 QGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITSTAK----G 298
Query: 403 SLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEP 450
S+T++ I A D + P S D LE +L G+ ++P
Sbjct: 299 SITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDP 346
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 444 MALNLEPDNVGVVVFGN-DRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
+AL+L D V + + D LI+ +++ TGA + VPVG+ LGRV + LG
Sbjct: 50 VALHLGDDTVRTIAMASTDGLIRGMEVID-TGAPISVPVGQVTLGRVFNVLG 100
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 4/168 (2%)
Query: 283 YCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRD 342
Y ++ +G++ +TDS + +V ++ + +G M E FRD
Sbjct: 173 YSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRD 232
Query: 343 NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGG 402
G+ L+ D++ + +A ++S LL R P Y + L ER G
Sbjct: 233 EGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKT----G 288
Query: 403 SLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEP 450
S+T++ + A D++ P + D + L ++ G+ ++P
Sbjct: 289 SITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDP 336
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 284 CIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRD- 342
++ +G++ + + DSG + T +V ++ + +G M E+FRD
Sbjct: 176 SVFAGVGERTREGNDLYHEMKDSGVISKTSMVFGQMNEPPGARLRVALTGLTMAEYFRDR 235
Query: 343 NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGG 402
G+ L+ D++ + A ++S LL R P Y + +L ER + G
Sbjct: 236 EGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKK----G 291
Query: 403 SLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEP 450
S+T++ I A D + P + D LE +L G+ ++P
Sbjct: 292 SITSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLAEMGIYPAVDP 339
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 47/260 (18%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCA-MGE 251
GIK VD L P +G + + G GKT L ++ I N + YS A +GE
Sbjct: 140 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YSVFAGVGE 192
Query: 252 FFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGY 311
R+ +Y ++ + V +D K+ +Y + + A++
Sbjct: 193 RTREGND----LYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVA----------- 237
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRR 370
+G + E+FRD G+ L+ D++ + A ++S LL R
Sbjct: 238 -------------------LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR 278
Query: 371 PPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD 430
P Y + + ER + GS+T++ I A D++ P + D
Sbjct: 279 IPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIXVPADDLTDPAPATTFAHLD 334
Query: 431 GQIFLETELFYKGMALNLEP 450
L + G+ ++P
Sbjct: 335 ATTVLSRAIAELGIYPAVDP 354
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 47/260 (18%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCA-MGE 251
GIK VD L P +G + + G GKT L ++ I N + YS A +GE
Sbjct: 186 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YSVFAGVGE 238
Query: 252 FFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGY 311
R+ +Y ++ + V +D K+ +Y + + A++
Sbjct: 239 RTREGND----LYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVA----------- 283
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRR 370
+G + E+FRD G+ L+ D++ + A ++S LL R
Sbjct: 284 -------------------LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR 324
Query: 371 PPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD 430
P Y + + ER + GS+T++ I A D++ P + D
Sbjct: 325 IPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLD 380
Query: 431 GQIFLETELFYKGMALNLEP 450
L + G+ ++P
Sbjct: 381 ATTVLSRAIAELGIYPAVDP 400
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 47/260 (18%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCA-MGE 251
GIK VD L P +G + + G GKT L ++ I N + YS A +GE
Sbjct: 136 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YSVFAGVGE 188
Query: 252 FFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGY 311
R+ +Y ++ + V +D K+ +Y + + A++
Sbjct: 189 RTREGND----LYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVA----------- 233
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRR 370
+G + E+FRD G+ L+ D++ + A ++S LL R
Sbjct: 234 -------------------LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR 274
Query: 371 PPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD 430
P Y + + ER + GS+T++ I A D++ P + D
Sbjct: 275 IPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLD 330
Query: 431 GQIFLETELFYKGMALNLEP 450
L + G+ ++P
Sbjct: 331 ATTVLSRAIAELGIYPAVDP 350
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 47/260 (18%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCA-MGE 251
GIK VD L P +G + + G GKT L ++ I N + YS A +GE
Sbjct: 140 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YSVFAGVGE 192
Query: 252 FFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGY 311
R+ +Y ++ + V +D K+ +Y + + A++
Sbjct: 193 RTREGND----LYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVA----------- 237
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRR 370
+G + E+FRD G+ L+ D++ + A ++S LL R
Sbjct: 238 -------------------LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR 278
Query: 371 PPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD 430
P Y + + ER + GS+T++ I A D++ P + D
Sbjct: 279 IPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLD 334
Query: 431 GQIFLETELFYKGMALNLEP 450
L + G+ ++P
Sbjct: 335 ATTVLSRAIAELGIYPAVDP 354
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 47/260 (18%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCA-MGE 251
GIK VD L P +G + + G GKT L ++ I N + YS A +GE
Sbjct: 138 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YSVFAGVGE 190
Query: 252 FFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGY 311
R+ +Y ++ + V +D K+ +Y + + A++
Sbjct: 191 RTREGND----LYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVA----------- 235
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRR 370
+G + E+FRD G+ L+ D++ + A ++S LL R
Sbjct: 236 -------------------LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR 276
Query: 371 PPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD 430
P Y + + ER + GS+T++ I A D++ P + D
Sbjct: 277 IPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLD 332
Query: 431 GQIFLETELFYKGMALNLEP 450
L + G+ ++P
Sbjct: 333 ATTVLSRAIAELGIYPAVDP 352
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 47/260 (18%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCA-MGE 251
GIK VD L P +G + + G GKT L ++ I N + YS A +GE
Sbjct: 140 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YSVFAGVGE 192
Query: 252 FFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGY 311
R+ +Y ++ + V +D K+ +Y + + A++
Sbjct: 193 RTREGND----LYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVA----------- 237
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRR 370
+G + E+FRD G+ L+ D++ + A ++S LL R
Sbjct: 238 -------------------LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR 278
Query: 371 PPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD 430
P Y + + ER + GS+T++ I A D++ P + D
Sbjct: 279 IPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLD 334
Query: 431 GQIFLETELFYKGMALNLEP 450
L + G+ ++P
Sbjct: 335 ATTVLSRAIAELGIYPAVDP 354
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 47/260 (18%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCA-MGE 251
GIK VD L P +G + + G GKT L ++ I N + YS A +GE
Sbjct: 128 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YSVFAGVGE 180
Query: 252 FFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGY 311
R+ +Y ++ + V +D K+ +Y + + A++
Sbjct: 181 RTREGND----LYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVA----------- 225
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRR 370
+G + E+FRD G+ L+ D++ + A ++S LL R
Sbjct: 226 -------------------LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR 266
Query: 371 PPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD 430
P Y + + ER + GS+T++ I A D++ P + D
Sbjct: 267 IPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLD 322
Query: 431 GQIFLETELFYKGMALNLEP 450
L + G+ ++P
Sbjct: 323 ATTVLSRAIAELGIYPAVDP 342
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 98/260 (37%), Gaps = 46/260 (17%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GIK V+ L P RG + + G GKT L ++ I N I A + +GE
Sbjct: 152 GIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINN---IAKA---HGGVSVFGGVGER 205
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQD-EKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGY 311
R+ +Y ++ + V Q+ + K+ +Y GQ G
Sbjct: 206 TREGND----LYMEMKESGVINEQNIAESKVALVY---GQMNE-------------PPGA 245
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRR 370
+ V TA M E+FRD N + L+ D++ + A ++S LL R
Sbjct: 246 RMRVGLTA--------------LTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGR 291
Query: 371 PPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD 430
P Y + L ER E GS+T++ + A D++ P + D
Sbjct: 292 MPSAVGYQPTLSTEMGSLQERITSTKE----GSITSIQAVYVPADDLTDPAPATTFAHLD 347
Query: 431 GQIFLETELFYKGMALNLEP 450
L L KG+ ++P
Sbjct: 348 ATTVLSRGLAAKGIYPAVDP 367
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 459 GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G + L++ G+ V TG + VPVG + LGR+++ +G
Sbjct: 99 GTEGLVR-GEKVLDTGGPISVPVGRETLGRIINVIG 133
>pdb|2HT1|A Chain A, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
pdb|2HT1|B Chain B, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
Length = 433
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 195 KAVDSLVPIGRGQRELIIGDRQTGKTAL 222
+ +D PIGRGQR LI+ + GKT L
Sbjct: 182 RVLDLASPIGRGQRGLIVAPPKAGKTML 209
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 459 GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G + L++ G+ V TG + VPVG + LGR+++ +G
Sbjct: 72 GTEGLVR-GEKVLDTGGPISVPVGRETLGRIINVIG 106
>pdb|1PVO|A Chain A, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|B Chain B, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|C Chain C, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|D Chain D, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|E Chain E, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|F Chain F, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1XPR|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPU|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPO|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
Length = 419
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 195 KAVDSLVPIGRGQRELIIGDRQTGKTAL 222
+ +D PIGRGQR LI+ + GKT L
Sbjct: 160 RVLDLASPIGRGQRGLIVAPPKAGKTML 187
>pdb|3ICE|A Chain A, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|B Chain B, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|C Chain C, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|D Chain D, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|E Chain E, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|F Chain F, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
Length = 422
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 195 KAVDSLVPIGRGQRELIIGDRQTGKTAL 222
+ +D PIGRGQR LI+ + GKT L
Sbjct: 163 RVLDLASPIGRGQRGLIVAPPKAGKTXL 190
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 459 GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G + L++ G+ V TG + VPVG + LGR+++ +G
Sbjct: 72 GTEGLVR-GEKVLDTGGPISVPVGRETLGRIINVIG 106
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 459 GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G + L++ G+ V TG + VPVG + LGR+++ +G
Sbjct: 66 GTEGLVR-GEKVLDTGGPISVPVGRETLGRIINVIG 100
>pdb|1PV4|A Chain A, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|B Chain B, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|C Chain C, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|D Chain D, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|E Chain E, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|F Chain F, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
Length = 419
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 195 KAVDSLVPIGRGQRELIIGDRQTGKTAL 222
+ +D PIGRGQR LI+ + GKT L
Sbjct: 160 RVLDLASPIGRGQRGLIVAPPKAGKTXL 187
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 459 GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G + L++ G+ V TG + VPVG + LGR+++ +G
Sbjct: 61 GTEGLVR-GEKVLDTGGPISVPVGRETLGRIINVIG 95
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 459 GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G + L++ G+ V TG + VPVG + LGR+++ +G
Sbjct: 61 GTEGLVR-GEKVLDTGGPISVPVGRETLGRIINVIG 95
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 195 KAVDSLVPIGRGQRELIIGDRQTGKTAL 222
+ +D PIG+GQR +I+ + GKT +
Sbjct: 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTI 191
>pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111
Length = 118
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 275 RQDEKKKLYCIYVAIGQKR-STVAQIVKRLTDSGAMGYTIIV 315
R + KLY + V +GQK TV +V ++ MG T++V
Sbjct: 24 RHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVV 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,010,713
Number of Sequences: 62578
Number of extensions: 554695
Number of successful extensions: 1828
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1507
Number of HSP's gapped (non-prelim): 290
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)