Query psy13776
Match_columns 539
No_of_seqs 278 out of 2083
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 20:12:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0056 AtpA F0F1-type ATP syn 100.0 3E-118 7E-123 931.4 29.3 380 39-536 1-392 (504)
2 TIGR03324 alt_F1F0_F1_al alter 100.0 5E-107 1E-111 872.2 33.5 379 42-536 4-392 (497)
3 PRK13343 F0F1 ATP synthase sub 100.0 7E-106 1E-110 866.1 33.0 381 40-536 2-392 (502)
4 PTZ00185 ATPase alpha subunit; 100.0 4E-105 1E-109 853.5 32.1 366 73-537 38-428 (574)
5 CHL00059 atpA ATP synthase CF1 100.0 2E-104 4E-109 849.4 30.8 357 73-536 5-371 (485)
6 TIGR00962 atpA proton transloc 100.0 1E-103 2E-108 851.9 32.8 381 41-537 2-392 (501)
7 PRK09281 F0F1 ATP synthase sub 100.0 2E-103 5E-108 849.3 33.1 382 40-537 2-393 (502)
8 PRK07165 F0F1 ATP synthase sub 100.0 1E-101 2E-106 831.1 30.5 348 77-536 4-368 (507)
9 COG1157 FliI Flagellar biosynt 100.0 2.5E-98 5E-103 781.0 25.9 350 64-536 28-387 (441)
10 TIGR01041 ATP_syn_B_arch ATP s 100.0 1.2E-95 3E-100 781.9 28.9 358 67-536 8-379 (458)
11 PRK04196 V-type ATP synthase s 100.0 7.1E-95 1.5E-99 777.2 32.2 342 94-536 24-381 (460)
12 CHL00060 atpB ATP synthase CF1 100.0 3.8E-93 8.1E-98 763.8 28.8 354 66-536 21-397 (494)
13 TIGR01039 atpD ATP synthase, F 100.0 5.9E-93 1.3E-97 757.8 28.0 353 66-536 7-372 (461)
14 TIGR01040 V-ATPase_V1_B V-type 100.0 8.5E-93 1.8E-97 755.0 28.4 354 66-521 7-375 (466)
15 PRK09280 F0F1 ATP synthase sub 100.0 1.2E-92 2.7E-97 757.1 29.1 353 66-536 8-373 (463)
16 PRK08972 fliI flagellum-specif 100.0 1.7E-92 3.6E-97 751.5 29.0 370 49-537 13-389 (444)
17 PRK06936 type III secretion sy 100.0 2.7E-92 5.9E-97 751.0 29.6 375 42-537 3-387 (439)
18 PRK12597 F0F1 ATP synthase sub 100.0 1.9E-91 4.2E-96 749.4 27.8 354 66-537 8-373 (461)
19 TIGR03305 alt_F1F0_F1_bet alte 100.0 1.2E-90 2.6E-95 740.1 28.6 316 118-537 45-368 (449)
20 PRK08927 fliI flagellum-specif 100.0 2.1E-90 4.5E-95 737.0 28.9 353 65-536 22-384 (442)
21 PRK05688 fliI flagellum-specif 100.0 4.8E-90 1E-94 735.8 28.7 353 65-536 32-394 (451)
22 PRK06820 type III secretion sy 100.0 2.6E-88 5.7E-93 721.7 33.1 372 43-536 6-387 (440)
23 TIGR03498 FliI_clade3 flagella 100.0 1.2E-88 2.5E-93 721.8 27.6 352 66-536 5-366 (418)
24 PRK09099 type III secretion sy 100.0 4.4E-88 9.5E-93 720.7 28.3 350 66-536 30-387 (441)
25 TIGR03496 FliI_clade1 flagella 100.0 2.4E-87 5.2E-92 711.2 28.1 352 66-536 5-363 (411)
26 cd01135 V_A-ATPase_B V/A-type 100.0 6.3E-88 1.4E-92 680.2 22.2 256 143-443 1-262 (276)
27 PRK02118 V-type ATP synthase s 100.0 3.4E-87 7.4E-92 710.2 26.9 344 66-537 10-363 (436)
28 cd01132 F1_ATPase_alpha F1 ATP 100.0 2.7E-87 5.9E-92 675.5 23.1 268 144-509 2-274 (274)
29 TIGR01043 ATP_syn_A_arch ATP s 100.0 9.8E-87 2.1E-91 723.3 28.4 352 67-537 7-468 (578)
30 PRK07594 type III secretion sy 100.0 3.2E-86 7E-91 704.5 30.4 347 67-536 28-379 (433)
31 PRK07960 fliI flagellum-specif 100.0 2.2E-86 4.8E-91 706.4 27.3 353 65-536 32-401 (455)
32 TIGR03497 FliI_clade2 flagella 100.0 3E-86 6.4E-91 703.2 28.2 350 66-536 5-361 (413)
33 PRK08149 ATP synthase SpaL; Va 100.0 3E-86 6.5E-91 703.9 27.8 350 66-536 12-375 (428)
34 PRK05922 type III secretion sy 100.0 3.2E-86 7E-91 704.1 27.9 349 65-536 24-379 (434)
35 PRK08472 fliI flagellum-specif 100.0 9.2E-86 2E-90 701.2 26.2 351 65-536 23-381 (434)
36 TIGR01042 V-ATPase_V1_A V-type 100.0 1.5E-85 3.2E-90 711.8 26.2 352 67-537 8-473 (591)
37 PRK07196 fliI flagellum-specif 100.0 8.9E-85 1.9E-89 693.6 26.4 353 65-537 22-381 (434)
38 PRK06002 fliI flagellum-specif 100.0 3E-84 6.6E-89 690.5 27.7 373 43-536 3-390 (450)
39 PRK04192 V-type ATP synthase s 100.0 8.1E-84 1.7E-88 701.4 28.5 338 94-537 24-471 (586)
40 cd01133 F1-ATPase_beta F1 ATP 100.0 4.4E-84 9.6E-89 652.9 23.4 267 143-510 1-273 (274)
41 TIGR02546 III_secr_ATP type II 100.0 4.7E-83 1E-87 681.1 26.7 350 66-536 11-369 (422)
42 TIGR01026 fliI_yscN ATPase Fli 100.0 1E-80 2.2E-85 665.5 30.6 350 67-536 30-387 (440)
43 PRK06793 fliI flagellum-specif 100.0 5.4E-81 1.2E-85 664.3 27.1 346 65-536 26-379 (432)
44 PRK07721 fliI flagellum-specif 100.0 2.9E-78 6.3E-83 646.2 25.6 351 65-536 23-382 (438)
45 PRK06315 type III secretion sy 100.0 9.1E-78 2E-82 641.2 24.9 352 65-536 28-389 (442)
46 cd01136 ATPase_flagellum-secre 100.0 2.1E-76 4.6E-81 610.6 23.9 288 143-537 1-294 (326)
47 cd01134 V_A-ATPase_A V/A-type 100.0 1.9E-71 4.1E-76 574.8 21.0 213 182-443 133-355 (369)
48 PRK14698 V-type ATP synthase s 100.0 5.4E-71 1.2E-75 634.4 23.1 202 282-537 683-902 (1017)
49 PF00006 ATP-synt_ab: ATP synt 100.0 4E-69 8.7E-74 528.5 16.5 203 192-443 1-203 (215)
50 PRK12608 transcription termina 100.0 3E-66 6.4E-71 541.2 22.7 294 128-536 56-355 (380)
51 COG0055 AtpD F0F1-type ATP syn 100.0 6.4E-64 1.4E-68 515.2 22.9 318 116-537 50-377 (468)
52 COG1156 NtpB Archaeal/vacuolar 100.0 1.1E-63 2.5E-68 517.1 17.0 323 94-515 27-360 (463)
53 KOG1353|consensus 100.0 4.3E-64 9.2E-69 494.1 12.2 285 46-535 1-291 (340)
54 PRK12678 transcription termina 100.0 3.3E-61 7.1E-66 520.2 22.7 287 128-535 330-637 (672)
55 KOG1351|consensus 100.0 7.3E-61 1.6E-65 479.9 19.8 343 85-517 35-388 (489)
56 PRK09376 rho transcription ter 100.0 1.4E-59 3E-64 492.6 25.2 296 128-535 88-390 (416)
57 KOG1350|consensus 100.0 3E-56 6.5E-61 450.3 15.1 316 118-537 98-427 (521)
58 TIGR00767 rho transcription te 100.0 3.1E-54 6.6E-59 453.9 22.3 239 187-535 149-389 (415)
59 COG1155 NtpA Archaeal/vacuolar 100.0 4E-52 8.6E-57 441.4 14.9 341 71-520 5-448 (588)
60 cd01128 rho_factor Transcripti 100.0 2.5E-50 5.3E-55 403.5 19.6 233 194-536 4-238 (249)
61 KOG1352|consensus 100.0 2.4E-51 5.2E-56 422.8 8.6 318 94-514 41-465 (618)
62 COG1158 Rho Transcription term 100.0 4.3E-37 9.4E-42 313.4 17.5 302 118-528 80-390 (422)
63 COG0056 AtpA F0F1-type ATP syn 99.3 6.4E-13 1.4E-17 141.2 2.3 55 441-495 59-113 (504)
64 KOG1353|consensus 99.1 1.6E-11 3.4E-16 122.9 2.6 55 442-496 53-107 (340)
65 cd01120 RecA-like_NTPases RecA 99.1 4.9E-09 1.1E-13 94.4 16.1 160 209-437 2-165 (165)
66 PTZ00185 ATPase alpha subunit; 98.7 6.1E-09 1.3E-13 114.0 2.0 57 442-499 79-136 (574)
67 PRK07165 F0F1 ATP synthase sub 98.4 8.7E-08 1.9E-12 105.1 1.6 58 442-500 36-93 (507)
68 CHL00059 atpA ATP synthase CF1 98.2 3.4E-07 7.4E-12 100.1 1.6 57 442-499 39-95 (485)
69 PRK13343 F0F1 ATP synthase sub 98.2 4.9E-07 1.1E-11 99.4 1.9 58 441-499 59-116 (502)
70 TIGR03324 alt_F1F0_F1_al alter 98.2 6.7E-07 1.5E-11 98.2 1.9 57 442-499 60-116 (497)
71 PF06745 KaiC: KaiC; InterPro 98.0 2.7E-05 5.8E-10 76.3 8.5 176 190-438 1-186 (226)
72 TIGR00962 atpA proton transloc 98.0 3.9E-06 8.5E-11 92.6 2.9 58 442-500 59-116 (501)
73 COG0467 RAD55 RecA-superfamily 97.9 0.00021 4.5E-09 71.9 13.5 182 188-443 3-199 (260)
74 PRK09281 F0F1 ATP synthase sub 97.8 6.8E-06 1.5E-10 90.8 1.8 58 441-499 59-116 (502)
75 PF02874 ATP-synt_ab_N: ATP sy 97.7 3.2E-05 6.9E-10 62.6 4.2 63 73-141 3-69 (69)
76 cd01394 radB RadB. The archaea 97.7 0.00032 6.9E-09 68.3 11.1 40 190-229 1-42 (218)
77 PRK09302 circadian clock prote 97.6 0.00046 1E-08 76.2 12.6 174 187-438 252-435 (509)
78 PRK04196 V-type ATP synthase s 97.6 2E-05 4.4E-10 86.2 1.9 56 442-498 40-96 (460)
79 smart00382 AAA ATPases associa 97.5 0.00027 5.9E-09 60.4 7.1 89 321-437 58-146 (148)
80 TIGR03878 thermo_KaiC_2 KaiC d 97.5 0.002 4.3E-08 65.4 14.5 41 190-230 4-60 (259)
81 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.00099 2.1E-08 66.4 12.1 42 189-230 2-45 (237)
82 TIGR03498 FliI_clade3 flagella 97.5 3.6E-05 7.7E-10 83.4 1.8 58 442-500 37-94 (418)
83 PRK04328 hypothetical protein; 97.5 0.0016 3.4E-08 65.6 13.1 43 188-230 3-47 (249)
84 TIGR02546 III_secr_ATP type II 97.5 4.4E-05 9.5E-10 82.9 1.9 57 442-499 41-97 (422)
85 TIGR03881 KaiC_arch_4 KaiC dom 97.5 0.0018 3.9E-08 63.5 13.1 39 190-228 2-42 (229)
86 PRK09099 type III secretion sy 97.4 5.4E-05 1.2E-09 82.5 1.5 56 443-499 62-117 (441)
87 PRK06793 fliI flagellum-specif 97.4 6.9E-05 1.5E-09 81.5 1.9 88 402-499 23-110 (432)
88 TIGR01041 ATP_syn_B_arch ATP s 97.4 6.7E-05 1.4E-09 82.2 1.5 58 442-500 38-96 (458)
89 PRK05688 fliI flagellum-specif 97.4 7E-05 1.5E-09 81.8 1.7 55 445-500 69-123 (451)
90 TIGR03496 FliI_clade1 flagella 97.3 8E-05 1.7E-09 80.6 1.8 57 442-499 35-91 (411)
91 TIGR01040 V-ATPase_V1_B V-type 97.3 7.9E-05 1.7E-09 81.4 1.7 58 442-500 38-96 (466)
92 PRK06067 flagellar accessory p 97.3 0.0024 5.3E-08 63.0 11.7 42 187-228 4-47 (234)
93 TIGR02236 recomb_radA DNA repa 97.2 0.0011 2.4E-08 68.4 8.9 127 187-360 74-207 (310)
94 TIGR01026 fliI_yscN ATPase Fli 97.2 0.00014 3E-09 79.5 1.9 58 442-500 60-117 (440)
95 PRK08472 fliI flagellum-specif 97.2 0.00013 2.9E-09 79.4 1.8 58 442-500 55-112 (434)
96 TIGR02655 circ_KaiC circadian 97.2 0.0065 1.4E-07 67.1 14.8 174 187-438 242-425 (484)
97 PRK06820 type III secretion sy 97.2 0.00014 2.9E-09 79.4 1.6 58 442-500 62-119 (440)
98 CHL00060 atpB ATP synthase CF1 97.2 0.00016 3.5E-09 79.7 1.7 54 446-500 62-116 (494)
99 PRK07721 fliI flagellum-specif 97.2 0.00016 3.5E-09 78.9 1.6 54 445-499 59-112 (438)
100 PRK02118 V-type ATP synthase s 97.1 0.00019 4.2E-09 78.0 2.1 56 443-500 40-95 (436)
101 TIGR01039 atpD ATP synthase, F 97.1 0.00043 9.3E-09 75.8 4.7 57 443-500 42-98 (461)
102 PRK07594 type III secretion sy 97.1 0.00019 4E-09 78.2 1.7 58 442-500 54-111 (433)
103 TIGR02012 tigrfam_recA protein 97.1 0.0012 2.6E-08 69.4 7.6 44 187-230 33-79 (321)
104 cd01393 recA_like RecA is a b 97.1 0.0032 6.9E-08 61.3 10.0 40 190-229 1-42 (226)
105 PRK09354 recA recombinase A; P 97.1 0.0012 2.6E-08 70.1 7.5 111 187-359 38-152 (349)
106 PRK06315 type III secretion sy 97.1 0.00021 4.6E-09 78.0 1.8 56 444-500 61-116 (442)
107 TIGR03497 FliI_clade2 flagella 97.1 0.00023 4.9E-09 77.2 1.9 57 443-500 36-92 (413)
108 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0018 3.9E-08 63.5 8.0 40 190-229 1-42 (235)
109 PRK09361 radB DNA repair and r 97.1 0.0022 4.8E-08 62.8 8.6 44 187-230 2-47 (225)
110 cd00983 recA RecA is a bacter 97.0 0.0013 2.8E-08 69.4 6.5 45 187-231 33-80 (325)
111 TIGR03305 alt_F1F0_F1_bet alte 97.0 0.00036 7.8E-09 76.3 2.2 57 443-500 37-93 (449)
112 PRK05922 type III secretion sy 97.0 0.00032 6.9E-09 76.5 1.7 57 442-499 55-111 (434)
113 TIGR01043 ATP_syn_A_arch ATP s 96.9 0.00033 7.1E-09 78.5 1.7 59 442-501 34-92 (578)
114 TIGR02237 recomb_radB DNA repa 96.9 0.01 2.2E-07 57.3 11.8 28 203-230 9-36 (209)
115 PRK09302 circadian clock prote 96.9 0.0094 2E-07 65.9 13.0 44 187-230 10-55 (509)
116 PRK08533 flagellar accessory p 96.9 0.018 3.8E-07 57.6 13.6 37 192-228 8-46 (230)
117 PRK09280 F0F1 ATP synthase sub 96.9 0.00043 9.3E-09 75.9 2.2 56 444-500 44-99 (463)
118 TIGR02655 circ_KaiC circadian 96.8 0.014 3.1E-07 64.4 13.3 42 189-230 2-45 (484)
119 cd01135 V_A-ATPase_B V/A-type 96.8 0.00013 2.8E-09 75.1 -2.5 47 229-276 137-184 (276)
120 PRK12597 F0F1 ATP synthase sub 96.8 0.00062 1.4E-08 74.7 2.5 51 448-499 47-97 (461)
121 PRK08972 fliI flagellum-specif 96.8 0.00054 1.2E-08 74.7 1.9 91 401-500 26-117 (444)
122 PRK08927 fliI flagellum-specif 96.8 0.00055 1.2E-08 74.8 1.8 55 444-499 57-111 (442)
123 PRK06936 type III secretion sy 96.7 0.00076 1.6E-08 73.6 2.1 52 448-500 66-117 (439)
124 TIGR02238 recomb_DMC1 meiotic 96.7 0.0054 1.2E-07 64.2 8.2 43 187-229 75-119 (313)
125 TIGR01042 V-ATPase_V1_A V-type 96.7 0.00073 1.6E-08 75.7 1.8 60 442-502 35-94 (591)
126 PRK08149 ATP synthase SpaL; Va 96.7 0.00071 1.5E-08 73.7 1.6 57 444-501 47-103 (428)
127 PLN03187 meiotic recombination 96.6 0.0092 2E-07 63.4 9.7 126 187-360 105-236 (344)
128 PRK06002 fliI flagellum-specif 96.6 0.0016 3.5E-08 71.2 4.2 56 442-499 63-118 (450)
129 cd01124 KaiC KaiC is a circadi 96.6 0.054 1.2E-06 50.8 13.7 71 345-438 95-165 (187)
130 TIGR03880 KaiC_arch_3 KaiC dom 96.5 0.033 7.2E-07 54.5 11.9 37 193-229 1-39 (224)
131 PRK09519 recA DNA recombinatio 96.4 0.008 1.7E-07 69.9 8.0 45 187-231 38-85 (790)
132 PRK07196 fliI flagellum-specif 96.4 0.0018 3.9E-08 70.7 2.3 54 446-500 57-110 (434)
133 PRK04301 radA DNA repair and r 96.3 0.013 2.7E-07 61.1 8.4 43 187-229 81-125 (317)
134 cd01122 GP4d_helicase GP4d_hel 96.2 0.099 2.1E-06 52.5 13.8 43 187-229 10-53 (271)
135 PRK07960 fliI flagellum-specif 96.2 0.0066 1.4E-07 66.6 5.5 55 445-500 69-130 (455)
136 PRK04192 V-type ATP synthase s 96.2 0.0023 5E-08 71.9 2.0 60 442-502 37-96 (586)
137 TIGR00416 sms DNA repair prote 96.1 0.051 1.1E-06 59.8 12.2 42 187-228 73-116 (454)
138 cd01132 F1_ATPase_alpha F1 ATP 96.1 0.00067 1.5E-08 69.8 -2.5 48 228-276 132-179 (274)
139 PLN03186 DNA repair protein RA 96.1 0.023 5E-07 60.3 8.9 43 187-229 102-146 (342)
140 cd01121 Sms Sms (bacterial rad 95.9 0.065 1.4E-06 57.6 11.4 39 187-225 61-101 (372)
141 PF00006 ATP-synt_ab: ATP synt 95.9 0.00061 1.3E-08 67.8 -3.9 42 234-275 81-122 (215)
142 TIGR02239 recomb_RAD51 DNA rep 95.8 0.035 7.7E-07 58.2 8.5 42 187-228 75-118 (316)
143 PRK11823 DNA repair protein Ra 95.7 0.13 2.9E-06 56.4 12.9 41 187-227 59-101 (446)
144 PTZ00035 Rad51 protein; Provis 95.6 0.033 7.1E-07 59.0 7.6 39 187-225 97-137 (337)
145 cd00009 AAA The AAA+ (ATPases 95.3 0.1 2.2E-06 45.1 8.5 26 205-231 18-43 (151)
146 PF13173 AAA_14: AAA domain 95.2 0.049 1.1E-06 48.9 6.4 34 336-369 50-85 (128)
147 cd01133 F1-ATPase_beta F1 ATP 95.2 0.0018 3.9E-08 66.7 -3.4 43 234-276 138-181 (274)
148 cd01134 V_A-ATPase_A V/A-type 95.1 0.0025 5.4E-08 68.0 -2.8 76 227-341 224-299 (369)
149 PF00154 RecA: recA bacterial 95.1 0.044 9.6E-07 57.8 6.4 110 187-358 31-144 (322)
150 PF05496 RuvB_N: Holliday junc 95.0 0.049 1.1E-06 55.0 6.3 22 209-231 53-74 (233)
151 PF05729 NACHT: NACHT domain 95.0 0.099 2.1E-06 47.3 7.8 22 209-231 3-24 (166)
152 PF08423 Rad51: Rad51; InterP 94.9 0.073 1.6E-06 54.2 7.4 43 187-229 17-61 (256)
153 COG1157 FliI Flagellar biosynt 94.9 0.022 4.8E-07 61.7 3.7 58 422-500 61-118 (441)
154 cd00544 CobU Adenosylcobinamid 94.7 0.12 2.5E-06 49.6 7.8 62 284-362 27-90 (169)
155 COG2256 MGS1 ATPase related to 94.5 0.079 1.7E-06 57.4 6.6 29 336-364 95-123 (436)
156 PF13481 AAA_25: AAA domain; P 94.4 0.18 4E-06 47.6 8.4 27 204-230 30-56 (193)
157 PF07088 GvpD: GvpD gas vesicl 94.3 0.29 6.2E-06 53.3 10.4 162 200-428 4-172 (484)
158 COG0468 RecA RecA/RadA recombi 94.3 0.11 2.3E-06 54.0 6.8 44 187-230 39-84 (279)
159 PF13401 AAA_22: AAA domain; P 94.3 0.13 2.9E-06 45.2 6.6 24 207-231 5-28 (131)
160 PF01637 Arch_ATPase: Archaeal 94.3 0.033 7.2E-07 53.1 2.9 29 330-358 103-131 (234)
161 cd01136 ATPase_flagellum-secre 94.2 0.005 1.1E-07 65.0 -3.1 57 215-276 121-177 (326)
162 PF00004 AAA: ATPase family as 94.1 0.35 7.6E-06 42.1 8.8 22 209-231 1-22 (132)
163 COG1124 DppF ABC-type dipeptid 93.9 0.042 9.2E-07 55.9 3.0 29 199-228 26-54 (252)
164 PRK00411 cdc6 cell division co 93.9 0.38 8.2E-06 50.9 10.4 26 205-231 54-79 (394)
165 KOG0730|consensus 93.5 0.087 1.9E-06 59.9 4.8 113 191-319 451-578 (693)
166 PRK14698 V-type ATP synthase s 93.4 0.037 8.1E-07 66.3 1.8 55 444-499 39-93 (1017)
167 PRK05973 replicative DNA helic 93.4 0.41 9E-06 48.5 9.1 30 202-231 60-89 (237)
168 cd00820 PEPCK_HprK Phosphoenol 93.0 0.09 1.9E-06 47.1 3.3 29 199-228 8-36 (107)
169 PRK08181 transposase; Validate 93.0 0.12 2.6E-06 53.2 4.6 27 205-232 105-131 (269)
170 cd03260 ABC_PstB_phosphate_tra 92.9 0.091 2E-06 51.4 3.5 31 199-230 19-49 (227)
171 COG0055 AtpD F0F1-type ATP syn 92.9 0.059 1.3E-06 57.9 2.3 69 423-499 28-99 (468)
172 cd03269 ABC_putative_ATPase Th 92.9 0.095 2.1E-06 50.7 3.5 31 198-229 18-48 (210)
173 PF01926 MMR_HSR1: 50S ribosom 92.8 1.8 3.9E-05 37.6 11.2 23 208-231 1-23 (116)
174 TIGR02211 LolD_lipo_ex lipopro 92.8 0.095 2.1E-06 51.0 3.4 30 199-229 24-53 (221)
175 cd03254 ABCC_Glucan_exporter_l 92.8 0.092 2E-06 51.4 3.3 32 198-230 21-52 (229)
176 COG1116 TauB ABC-type nitrate/ 92.7 0.087 1.9E-06 53.7 3.1 30 198-228 21-50 (248)
177 PRK04296 thymidine kinase; Pro 92.7 0.66 1.4E-05 44.8 9.1 25 206-230 2-26 (190)
178 TIGR01166 cbiO cobalt transpor 92.7 0.096 2.1E-06 49.9 3.3 29 200-229 12-40 (190)
179 cd03229 ABC_Class3 This class 92.7 0.11 2.3E-06 49.3 3.5 29 200-229 20-48 (178)
180 cd03225 ABC_cobalt_CbiO_domain 92.6 0.1 2.2E-06 50.4 3.3 31 198-229 19-49 (211)
181 PRK06893 DNA replication initi 92.6 0.13 2.8E-06 51.1 4.1 23 209-232 42-64 (229)
182 TIGR03608 L_ocin_972_ABC putat 92.6 0.1 2.2E-06 50.1 3.3 30 198-228 16-45 (206)
183 cd03292 ABC_FtsE_transporter F 92.5 0.11 2.4E-06 50.2 3.5 31 198-229 19-49 (214)
184 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.5 0.11 2.4E-06 50.4 3.4 30 199-229 23-52 (218)
185 PRK13540 cytochrome c biogenes 92.5 0.11 2.5E-06 50.0 3.4 31 198-229 19-49 (200)
186 cd03224 ABC_TM1139_LivF_branch 92.5 0.11 2.3E-06 50.5 3.3 29 199-228 19-47 (222)
187 TIGR02928 orc1/cdc6 family rep 92.5 0.62 1.3E-05 48.7 9.2 27 204-231 38-64 (365)
188 TIGR00960 3a0501s02 Type II (G 92.4 0.11 2.5E-06 50.3 3.3 30 199-229 22-51 (216)
189 TIGR02315 ABC_phnC phosphonate 92.4 0.1 2.3E-06 51.5 3.1 30 199-229 21-50 (243)
190 cd03222 ABC_RNaseL_inhibitor T 92.3 0.11 2.4E-06 50.0 3.2 32 196-228 15-46 (177)
191 PRK13342 recombination factor 92.3 0.45 9.7E-06 51.5 8.1 23 207-230 37-59 (413)
192 cd03296 ABC_CysA_sulfate_impor 92.3 0.12 2.5E-06 51.2 3.4 31 198-229 20-50 (239)
193 PRK11124 artP arginine transpo 92.3 0.12 2.5E-06 51.2 3.4 29 199-228 21-49 (242)
194 PRK13539 cytochrome c biogenes 92.3 0.12 2.6E-06 50.2 3.3 32 198-230 20-51 (207)
195 cd03262 ABC_HisP_GlnQ_permease 92.3 0.11 2.3E-06 50.2 3.0 29 200-229 20-48 (213)
196 TIGR03410 urea_trans_UrtE urea 92.3 0.11 2.4E-06 50.9 3.2 30 198-228 18-47 (230)
197 cd03256 ABC_PhnC_transporter A 92.3 0.11 2.4E-06 51.1 3.2 29 200-229 21-49 (241)
198 PRK14267 phosphate ABC transpo 92.2 0.11 2.5E-06 51.6 3.1 31 198-229 22-52 (253)
199 PRK14722 flhF flagellar biosyn 92.2 0.34 7.4E-06 52.3 6.9 36 194-230 124-160 (374)
200 PF00005 ABC_tran: ABC transpo 92.1 0.13 2.8E-06 45.9 3.1 30 200-230 5-34 (137)
201 cd03261 ABC_Org_Solvent_Resist 92.1 0.13 2.9E-06 50.6 3.4 30 198-228 18-47 (235)
202 PRK05800 cobU adenosylcobinami 92.1 0.79 1.7E-05 43.9 8.6 17 208-224 3-19 (170)
203 PRK11701 phnK phosphonate C-P 92.0 0.13 2.9E-06 51.5 3.4 31 198-229 24-54 (258)
204 PRK14247 phosphate ABC transpo 92.0 0.12 2.6E-06 51.4 3.1 31 198-229 21-51 (250)
205 PF04665 Pox_A32: Poxvirus A32 92.0 0.5 1.1E-05 48.1 7.5 21 208-228 15-35 (241)
206 cd03265 ABC_DrrA DrrA is the A 92.0 0.13 2.9E-06 50.1 3.3 31 198-229 18-48 (220)
207 PF00931 NB-ARC: NB-ARC domain 92.0 0.29 6.3E-06 49.0 5.8 20 205-224 18-37 (287)
208 PF00910 RNA_helicase: RNA hel 92.0 0.27 6E-06 43.0 4.9 19 209-228 1-19 (107)
209 cd03259 ABC_Carb_Solutes_like 92.0 0.13 2.9E-06 49.8 3.2 30 199-229 19-48 (213)
210 cd03245 ABCC_bacteriocin_expor 92.0 0.14 3E-06 49.8 3.3 32 198-230 22-53 (220)
211 cd03218 ABC_YhbG The ABC trans 91.9 0.12 2.6E-06 50.6 3.0 29 200-229 20-48 (232)
212 PRK14255 phosphate ABC transpo 91.9 0.12 2.6E-06 51.4 3.0 28 200-228 25-52 (252)
213 TIGR03864 PQQ_ABC_ATP ABC tran 91.9 0.14 3.1E-06 50.5 3.4 29 199-228 20-48 (236)
214 TIGR02673 FtsE cell division A 91.9 0.14 3E-06 49.6 3.2 30 199-229 21-50 (214)
215 cd03266 ABC_NatA_sodium_export 91.9 0.14 3E-06 49.7 3.3 30 198-228 23-52 (218)
216 TIGR00635 ruvB Holliday juncti 91.9 0.37 7.9E-06 49.2 6.5 25 206-231 30-54 (305)
217 PRK14274 phosphate ABC transpo 91.9 0.15 3.2E-06 51.2 3.5 30 199-229 31-60 (259)
218 cd03226 ABC_cobalt_CbiO_domain 91.9 0.14 3.1E-06 49.3 3.3 29 200-229 20-48 (205)
219 cd03298 ABC_ThiQ_thiamine_tran 91.9 0.16 3.4E-06 49.2 3.6 32 197-229 15-46 (211)
220 cd03219 ABC_Mj1267_LivG_branch 91.8 0.12 2.6E-06 50.8 2.8 28 200-228 20-47 (236)
221 cd03258 ABC_MetN_methionine_tr 91.8 0.14 3E-06 50.4 3.2 29 200-229 25-53 (233)
222 cd03249 ABC_MTABC3_MDL1_MDL2 M 91.8 0.14 3.1E-06 50.4 3.3 32 198-230 21-52 (238)
223 cd03293 ABC_NrtD_SsuB_transpor 91.8 0.14 3.1E-06 49.9 3.2 29 200-229 24-52 (220)
224 PRK13541 cytochrome c biogenes 91.8 0.14 3E-06 49.2 3.0 32 197-229 17-48 (195)
225 PRK10895 lipopolysaccharide AB 91.7 0.15 3.2E-06 50.5 3.4 31 198-229 21-51 (241)
226 cd03301 ABC_MalK_N The N-termi 91.7 0.15 3.3E-06 49.3 3.3 30 199-229 19-48 (213)
227 cd03251 ABCC_MsbA MsbA is an e 91.7 0.16 3.4E-06 49.9 3.4 30 198-228 20-49 (234)
228 PRK09493 glnQ glutamine ABC tr 91.7 0.15 3.3E-06 50.4 3.4 30 198-228 19-48 (240)
229 cd03270 ABC_UvrA_I The excisio 91.7 0.14 3.1E-06 50.7 3.1 29 200-228 15-43 (226)
230 PRK11248 tauB taurine transpor 91.6 0.16 3.4E-06 51.3 3.4 30 199-229 20-49 (255)
231 PRK08118 topology modulation p 91.6 0.14 3E-06 48.7 2.9 24 207-231 2-25 (167)
232 cd03257 ABC_NikE_OppD_transpor 91.6 0.14 3E-06 49.9 3.0 30 199-229 24-53 (228)
233 cd03230 ABC_DR_subfamily_A Thi 91.6 0.17 3.6E-06 47.8 3.4 30 199-229 19-48 (173)
234 PRK08727 hypothetical protein; 91.6 1.3 2.7E-05 44.3 9.8 25 207-232 42-66 (233)
235 COG1222 RPT1 ATP-dependent 26S 91.5 0.4 8.8E-06 51.5 6.5 94 209-319 188-298 (406)
236 PRK11629 lolD lipoprotein tran 91.5 0.17 3.6E-06 49.9 3.5 30 199-229 28-57 (233)
237 TIGR03005 ectoine_ehuA ectoine 91.5 0.16 3.5E-06 50.6 3.4 31 198-229 18-48 (252)
238 TIGR01978 sufC FeS assembly AT 91.5 0.14 3.1E-06 50.4 3.0 30 199-229 19-48 (243)
239 cd03217 ABC_FeS_Assembly ABC-t 91.5 0.14 3.1E-06 49.4 2.9 30 198-228 18-47 (200)
240 PRK10584 putative ABC transpor 91.5 0.16 3.4E-06 49.8 3.2 31 199-230 29-59 (228)
241 cd03216 ABC_Carb_Monos_I This 91.5 0.18 3.9E-06 47.3 3.4 29 200-229 20-48 (163)
242 TIGR02770 nickel_nikD nickel i 91.5 0.16 3.4E-06 50.1 3.2 30 199-229 5-34 (230)
243 cd03252 ABCC_Hemolysin The ABC 91.5 0.16 3.5E-06 50.0 3.3 31 198-229 20-50 (237)
244 cd03250 ABCC_MRP_domain1 Domai 91.5 0.17 3.7E-06 48.7 3.4 31 198-229 23-53 (204)
245 cd03246 ABCC_Protease_Secretio 91.5 0.18 4E-06 47.5 3.5 31 199-230 21-51 (173)
246 PRK11831 putative ABC transpor 91.4 0.17 3.6E-06 51.3 3.4 31 198-229 25-55 (269)
247 PRK14240 phosphate transporter 91.4 0.16 3.4E-06 50.6 3.2 31 198-229 21-51 (250)
248 cd03247 ABCC_cytochrome_bd The 91.4 0.19 4E-06 47.6 3.5 32 198-230 20-51 (178)
249 cd03238 ABC_UvrA The excision 91.4 0.17 3.7E-06 48.7 3.3 29 199-228 14-42 (176)
250 cd03295 ABC_OpuCA_Osmoprotecti 91.4 0.18 3.8E-06 50.1 3.5 29 199-228 20-48 (242)
251 cd01125 repA Hexameric Replica 91.4 2.1 4.5E-05 42.5 11.1 24 206-229 1-24 (239)
252 PRK11264 putative amino-acid A 91.4 0.16 3.5E-06 50.4 3.2 30 199-229 22-51 (250)
253 PRK13543 cytochrome c biogenes 91.4 0.16 3.6E-06 49.5 3.2 30 198-228 29-58 (214)
254 cd03268 ABC_BcrA_bacitracin_re 91.4 0.18 3.9E-06 48.7 3.4 30 199-229 19-48 (208)
255 PRK10771 thiQ thiamine transpo 91.3 0.17 3.7E-06 49.8 3.3 30 198-228 17-46 (232)
256 cd03235 ABC_Metallic_Cations A 91.3 0.15 3.3E-06 49.4 2.9 28 200-228 19-46 (213)
257 PRK15177 Vi polysaccharide exp 91.3 0.18 3.8E-06 49.5 3.4 30 199-229 6-35 (213)
258 PRK14250 phosphate ABC transpo 91.3 0.17 3.7E-06 50.2 3.4 31 198-229 21-51 (241)
259 PRK14266 phosphate ABC transpo 91.3 0.18 4E-06 50.1 3.5 31 198-229 21-51 (250)
260 PRK12377 putative replication 91.3 0.36 7.7E-06 49.2 5.6 24 207-231 102-125 (248)
261 cd03263 ABC_subfamily_A The AB 91.3 0.18 3.9E-06 49.0 3.3 31 198-229 20-50 (220)
262 PRK14262 phosphate ABC transpo 91.3 0.18 3.9E-06 50.2 3.4 30 199-229 22-51 (250)
263 cd03248 ABCC_TAP TAP, the Tran 91.2 0.18 3.9E-06 49.3 3.3 29 200-229 34-62 (226)
264 cd03215 ABC_Carb_Monos_II This 91.2 0.18 3.9E-06 48.0 3.2 30 199-229 19-48 (182)
265 cd01853 Toc34_like Toc34-like 91.2 3.4 7.4E-05 42.0 12.6 23 208-231 33-55 (249)
266 cd03290 ABCC_SUR1_N The SUR do 91.2 0.19 4.1E-06 49.0 3.4 30 200-230 21-50 (218)
267 PRK10908 cell division protein 91.2 0.19 4E-06 49.1 3.4 29 200-229 22-50 (222)
268 PRK10575 iron-hydroxamate tran 91.2 0.16 3.6E-06 51.2 3.1 29 199-228 30-58 (265)
269 COG1066 Sms Predicted ATP-depe 91.2 0.58 1.3E-05 51.1 7.3 39 187-225 72-112 (456)
270 PRK14241 phosphate transporter 91.2 0.18 4E-06 50.5 3.4 31 198-229 22-52 (258)
271 PF13207 AAA_17: AAA domain; P 91.2 0.18 3.9E-06 44.0 2.9 22 208-230 1-22 (121)
272 PRK10247 putative ABC transpor 91.1 0.18 4E-06 49.5 3.2 31 198-229 25-55 (225)
273 PRK14239 phosphate transporter 91.1 0.19 4.1E-06 50.0 3.3 30 198-228 23-52 (252)
274 TIGR00968 3a0106s01 sulfate AB 91.1 0.2 4.3E-06 49.7 3.5 29 200-229 20-48 (237)
275 cd03231 ABC_CcmA_heme_exporter 91.0 0.19 4E-06 48.6 3.2 31 198-229 18-48 (201)
276 TIGR03411 urea_trans_UrtD urea 91.0 0.19 4.2E-06 49.6 3.3 30 199-229 21-50 (242)
277 cd03213 ABCG_EPDR ABCG transpo 91.0 0.18 4E-06 48.5 3.1 31 198-229 27-57 (194)
278 TIGR00972 3a0107s01c2 phosphat 91.0 0.19 4.2E-06 49.9 3.3 31 198-229 19-49 (247)
279 PRK15056 manganese/iron transp 91.0 0.2 4.3E-06 50.9 3.4 32 198-230 25-56 (272)
280 PRK14244 phosphate ABC transpo 91.0 0.2 4.4E-06 49.9 3.4 30 198-228 23-52 (251)
281 cd03223 ABCD_peroxisomal_ALDP 90.9 0.19 4.2E-06 47.2 3.1 31 198-229 19-49 (166)
282 PRK14242 phosphate transporter 90.9 0.2 4.3E-06 49.9 3.3 29 200-229 26-54 (253)
283 PRK11300 livG leucine/isoleuci 90.9 0.19 4.2E-06 50.0 3.3 31 198-229 23-53 (255)
284 COG1474 CDC6 Cdc6-related prot 90.9 1 2.2E-05 48.5 8.8 38 321-358 99-136 (366)
285 TIGR01184 ntrCD nitrate transp 90.9 0.2 4.3E-06 49.5 3.3 29 200-229 5-33 (230)
286 PRK10418 nikD nickel transport 90.9 0.19 4.2E-06 50.3 3.3 30 198-228 21-50 (254)
287 PRK11247 ssuB aliphatic sulfon 90.9 0.2 4.4E-06 50.7 3.4 31 198-229 30-60 (257)
288 PRK14273 phosphate ABC transpo 90.9 0.19 4.2E-06 50.2 3.2 29 200-229 27-55 (254)
289 PRK07261 topology modulation p 90.9 0.18 3.9E-06 47.9 2.8 22 207-229 1-22 (171)
290 PRK14253 phosphate ABC transpo 90.9 0.19 4.2E-06 49.9 3.2 30 200-230 23-52 (249)
291 PRK14248 phosphate ABC transpo 90.9 0.2 4.3E-06 50.6 3.3 29 200-229 41-69 (268)
292 COG4619 ABC-type uncharacteriz 90.9 0.19 4.1E-06 49.2 2.9 30 200-230 23-52 (223)
293 PRK15093 antimicrobial peptide 90.8 0.2 4.4E-06 52.6 3.4 33 196-229 22-55 (330)
294 PRK14237 phosphate transporter 90.8 0.21 4.7E-06 50.5 3.5 30 199-229 39-68 (267)
295 PRK13632 cbiO cobalt transport 90.8 0.21 4.5E-06 50.7 3.4 29 200-229 29-57 (271)
296 PRK11889 flhF flagellar biosyn 90.8 2.1 4.5E-05 47.0 11.1 142 204-384 239-386 (436)
297 TIGR02323 CP_lyasePhnK phospho 90.8 0.19 4.2E-06 50.0 3.1 31 198-229 21-51 (253)
298 PRK13649 cbiO cobalt transport 90.7 0.21 4.6E-06 50.7 3.4 30 199-229 26-55 (280)
299 PRK13645 cbiO cobalt transport 90.7 0.21 4.6E-06 51.1 3.4 30 199-229 30-59 (289)
300 PRK14238 phosphate transporter 90.7 0.22 4.8E-06 50.6 3.5 31 199-230 43-73 (271)
301 PRK14243 phosphate transporter 90.7 0.2 4.4E-06 50.6 3.2 31 198-229 28-58 (264)
302 cd03253 ABCC_ATM1_transporter 90.7 0.22 4.8E-06 48.9 3.4 32 198-230 19-50 (236)
303 PRK13648 cbiO cobalt transport 90.7 0.22 4.8E-06 50.4 3.5 32 198-230 27-58 (269)
304 PRK10419 nikE nickel transport 90.7 0.2 4.4E-06 50.7 3.2 30 198-228 30-59 (268)
305 TIGR02324 CP_lyasePhnL phospho 90.7 0.21 4.6E-06 48.8 3.2 30 198-228 26-55 (224)
306 cd03214 ABC_Iron-Siderophores_ 90.7 0.23 5.1E-06 47.1 3.4 31 198-229 17-47 (180)
307 PRK13548 hmuV hemin importer A 90.6 0.21 4.6E-06 50.2 3.3 29 200-229 22-50 (258)
308 PRK10253 iron-enterobactin tra 90.6 0.19 4.1E-06 50.8 2.9 29 200-229 27-55 (265)
309 PRK09544 znuC high-affinity zi 90.6 0.23 5E-06 50.0 3.5 31 199-230 23-53 (251)
310 PRK14256 phosphate ABC transpo 90.6 0.21 4.6E-06 49.8 3.2 29 200-229 24-52 (252)
311 cd03267 ABC_NatA_like Similar 90.6 0.22 4.7E-06 49.4 3.3 30 199-229 40-69 (236)
312 PRK11308 dppF dipeptide transp 90.6 0.22 4.7E-06 52.4 3.4 31 198-229 33-63 (327)
313 PRK14270 phosphate ABC transpo 90.6 0.22 4.8E-06 49.6 3.3 29 200-229 24-52 (251)
314 PRK14261 phosphate ABC transpo 90.6 0.23 4.9E-06 49.6 3.4 29 199-228 25-53 (253)
315 PRK13641 cbiO cobalt transport 90.6 0.23 4.9E-06 50.9 3.5 32 198-230 25-56 (287)
316 PRK14723 flhF flagellar biosyn 90.6 0.62 1.4E-05 54.5 7.3 67 292-369 250-318 (767)
317 PRK14251 phosphate ABC transpo 90.6 0.23 5E-06 49.4 3.4 30 199-229 23-52 (251)
318 PRK14269 phosphate ABC transpo 90.5 0.24 5.2E-06 49.3 3.5 31 198-229 20-50 (246)
319 TIGR03740 galliderm_ABC gallid 90.5 0.24 5.2E-06 48.4 3.4 29 200-229 20-48 (223)
320 cd03115 SRP The signal recogni 90.5 2.7 5.8E-05 39.3 10.4 16 209-224 3-18 (173)
321 TIGR01188 drrA daunorubicin re 90.5 0.23 4.9E-06 51.3 3.4 30 199-229 12-41 (302)
322 cd03287 ABC_MSH3_euk MutS3 hom 90.5 3.3 7.1E-05 41.5 11.5 32 196-228 21-52 (222)
323 PRK09984 phosphonate/organopho 90.4 0.21 4.5E-06 50.3 3.0 30 199-229 23-52 (262)
324 PRK14268 phosphate ABC transpo 90.4 0.24 5.2E-06 49.7 3.4 31 198-229 30-60 (258)
325 PRK14272 phosphate ABC transpo 90.4 0.22 4.8E-06 49.5 3.1 29 200-229 24-52 (252)
326 TIGR01189 ccmA heme ABC export 90.4 0.25 5.4E-06 47.5 3.4 29 199-228 19-47 (198)
327 PRK15079 oligopeptide ABC tran 90.4 0.23 5.1E-06 52.3 3.5 31 198-229 39-69 (331)
328 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 90.4 0.24 5.3E-06 48.8 3.4 31 198-229 40-70 (224)
329 PRK14245 phosphate ABC transpo 90.4 0.24 5.2E-06 49.3 3.4 30 198-228 21-50 (250)
330 cd00267 ABC_ATPase ABC (ATP-bi 90.4 0.26 5.7E-06 45.4 3.4 31 198-229 17-47 (157)
331 PRK13638 cbiO cobalt transport 90.4 0.22 4.8E-06 50.4 3.1 30 198-228 19-48 (271)
332 PRK14271 phosphate ABC transpo 90.4 0.24 5.2E-06 50.6 3.4 31 198-229 39-69 (276)
333 PRK10851 sulfate/thiosulfate t 90.4 0.24 5.1E-06 52.7 3.5 32 198-230 20-51 (353)
334 CHL00131 ycf16 sulfate ABC tra 90.3 0.2 4.3E-06 49.9 2.7 29 200-229 27-55 (252)
335 PRK13538 cytochrome c biogenes 90.3 0.23 5.1E-06 48.0 3.1 31 198-229 19-49 (204)
336 cd03233 ABC_PDR_domain1 The pl 90.3 0.23 5E-06 48.1 3.1 31 198-229 25-55 (202)
337 PRK00080 ruvB Holliday junctio 90.3 0.68 1.5E-05 48.3 6.8 24 207-231 52-75 (328)
338 cd03294 ABC_Pro_Gly_Bertaine T 90.3 0.25 5.4E-06 50.1 3.4 30 198-228 42-71 (269)
339 COG0444 DppD ABC-type dipeptid 90.3 0.27 5.8E-06 51.8 3.7 34 194-228 18-52 (316)
340 PRK10619 histidine/lysine/argi 90.3 0.26 5.5E-06 49.4 3.5 30 199-229 24-53 (257)
341 PRK10744 pstB phosphate transp 90.2 0.24 5.2E-06 49.8 3.3 29 199-228 32-60 (260)
342 PRK11614 livF leucine/isoleuci 90.2 0.24 5.1E-06 48.9 3.2 29 199-228 24-52 (237)
343 TIGR01288 nodI ATP-binding ABC 90.2 0.24 5.2E-06 51.2 3.3 30 199-229 23-52 (303)
344 PRK11144 modC molybdate transp 90.2 0.31 6.7E-06 51.7 4.2 33 196-229 14-46 (352)
345 COG4608 AppF ABC-type oligopep 90.2 0.29 6.2E-06 50.6 3.8 34 194-228 26-60 (268)
346 PRK13643 cbiO cobalt transport 90.2 0.25 5.3E-06 50.8 3.3 30 198-228 24-53 (288)
347 TIGR02982 heterocyst_DevA ABC 90.1 0.27 5.9E-06 48.0 3.4 31 198-229 23-53 (220)
348 cd03369 ABCC_NFT1 Domain 2 of 90.1 0.25 5.5E-06 47.7 3.2 31 198-229 26-56 (207)
349 PRK13546 teichoic acids export 90.0 0.26 5.7E-06 50.2 3.3 32 198-230 42-73 (264)
350 PRK14275 phosphate ABC transpo 90.0 0.27 5.9E-06 50.4 3.5 31 198-229 57-87 (286)
351 PRK14527 adenylate kinase; Pro 90.0 2.6 5.5E-05 40.4 10.0 24 205-229 5-28 (191)
352 TIGR01277 thiQ thiamine ABC tr 89.9 0.29 6.2E-06 47.6 3.4 30 198-228 16-45 (213)
353 PRK06526 transposase; Provisio 89.9 0.48 1E-05 48.3 5.1 27 205-232 97-123 (254)
354 cd03234 ABCG_White The White s 89.9 0.24 5.2E-06 48.6 2.9 30 199-229 26-55 (226)
355 PRK14265 phosphate ABC transpo 89.9 0.27 5.9E-06 50.0 3.4 30 198-228 38-67 (274)
356 COG4167 SapF ABC-type antimicr 89.9 0.3 6.5E-06 48.4 3.5 28 200-228 33-60 (267)
357 TIGR03771 anch_rpt_ABC anchore 89.9 0.22 4.8E-06 48.9 2.7 26 202-228 2-27 (223)
358 PRK15112 antimicrobial peptide 89.9 0.27 5.9E-06 49.7 3.3 30 198-228 31-60 (267)
359 PRK14235 phosphate transporter 89.9 0.29 6.4E-06 49.5 3.6 31 198-229 37-67 (267)
360 PRK13547 hmuV hemin importer A 89.9 0.26 5.6E-06 50.4 3.1 30 199-229 20-49 (272)
361 TIGR02769 nickel_nikE nickel i 89.8 0.25 5.5E-06 49.8 3.0 31 198-229 29-59 (265)
362 cd03244 ABCC_MRP_domain2 Domai 89.8 0.29 6.2E-06 47.6 3.3 30 198-228 22-51 (221)
363 PRK14260 phosphate ABC transpo 89.8 0.28 6.1E-06 49.3 3.4 30 199-229 26-55 (259)
364 PRK13651 cobalt transporter AT 89.8 0.28 6E-06 51.1 3.4 30 198-228 25-54 (305)
365 PRK13646 cbiO cobalt transport 89.8 0.28 6.1E-06 50.2 3.4 31 198-229 25-55 (286)
366 PRK09473 oppD oligopeptide tra 89.8 0.26 5.6E-06 51.9 3.2 29 200-229 36-64 (330)
367 KOG0744|consensus 89.8 0.38 8.2E-06 51.2 4.3 70 209-291 180-258 (423)
368 cd03264 ABC_drug_resistance_li 89.8 0.27 5.8E-06 47.6 3.1 28 199-228 19-46 (211)
369 cd03236 ABC_RNaseL_inhibitor_d 89.8 0.22 4.7E-06 50.6 2.5 27 202-229 22-48 (255)
370 PRK14249 phosphate ABC transpo 89.7 0.29 6.3E-06 48.8 3.3 31 198-229 22-52 (251)
371 cd03291 ABCC_CFTR1 The CFTR su 89.7 0.29 6.3E-06 50.5 3.4 31 198-229 55-85 (282)
372 PRK14974 cell division protein 89.7 2 4.4E-05 45.7 9.8 25 204-229 138-162 (336)
373 PRK14264 phosphate ABC transpo 89.6 0.3 6.5E-06 50.6 3.5 31 198-229 63-93 (305)
374 cd03232 ABC_PDR_domain2 The pl 89.6 0.29 6.4E-06 47.0 3.2 28 200-228 27-54 (192)
375 cd03300 ABC_PotA_N PotA is an 89.6 0.29 6.2E-06 48.3 3.2 30 200-230 20-49 (232)
376 TIGR03598 GTPase_YsxC ribosome 89.6 3.3 7.1E-05 38.9 10.2 22 208-230 20-41 (179)
377 PRK11650 ugpC glycerol-3-phosp 89.6 0.28 6.2E-06 52.2 3.4 31 198-229 22-52 (356)
378 PRK11432 fbpC ferric transport 89.6 0.29 6.4E-06 52.1 3.4 30 199-229 25-54 (351)
379 PF13671 AAA_33: AAA domain; P 89.6 2.7 5.9E-05 37.5 9.2 19 209-228 2-20 (143)
380 cd03228 ABCC_MRP_Like The MRP 89.6 0.33 7.1E-06 45.7 3.4 31 199-230 21-51 (171)
381 PRK14252 phosphate ABC transpo 89.5 0.31 6.8E-06 49.1 3.5 31 198-229 34-64 (265)
382 CHL00176 ftsH cell division pr 89.5 0.85 1.9E-05 52.5 7.3 23 209-232 219-241 (638)
383 TIGR02314 ABC_MetN D-methionin 89.5 0.3 6.5E-06 51.9 3.4 30 198-228 23-52 (343)
384 PRK13639 cbiO cobalt transport 89.5 0.31 6.7E-06 49.6 3.4 31 198-229 20-50 (275)
385 PRK14254 phosphate ABC transpo 89.5 0.31 6.8E-06 50.0 3.5 30 199-229 58-87 (285)
386 PRK13650 cbiO cobalt transport 89.5 0.31 6.8E-06 49.7 3.5 32 198-230 25-56 (279)
387 cd03221 ABCF_EF-3 ABCF_EF-3 E 89.4 0.28 6.1E-06 45.2 2.8 28 201-229 21-48 (144)
388 PRK13637 cbiO cobalt transport 89.4 0.32 6.9E-06 49.9 3.4 32 198-230 25-56 (287)
389 COG2255 RuvB Holliday junction 89.4 0.4 8.8E-06 50.2 4.1 24 208-232 54-77 (332)
390 PRK13647 cbiO cobalt transport 89.4 0.32 7E-06 49.5 3.4 29 200-229 25-53 (274)
391 PRK13640 cbiO cobalt transport 89.4 0.32 7E-06 49.7 3.5 32 198-230 25-56 (282)
392 PRK14263 phosphate ABC transpo 89.3 0.33 7.2E-06 49.0 3.5 30 198-228 26-55 (261)
393 PRK11231 fecE iron-dicitrate t 89.3 0.32 7E-06 48.7 3.3 28 200-228 22-49 (255)
394 PRK14246 phosphate ABC transpo 89.3 0.31 6.7E-06 49.2 3.2 31 198-229 28-58 (257)
395 PRK11022 dppD dipeptide transp 89.3 0.31 6.8E-06 51.1 3.4 30 199-229 26-55 (326)
396 TIGR03265 PhnT2 putative 2-ami 89.2 0.33 7.1E-06 51.7 3.5 31 198-229 22-52 (353)
397 PRK13635 cbiO cobalt transport 89.2 0.34 7.3E-06 49.5 3.5 31 199-230 26-56 (279)
398 PRK14259 phosphate ABC transpo 89.2 0.32 7E-06 49.3 3.3 30 199-229 32-61 (269)
399 PF13555 AAA_29: P-loop contai 89.2 0.39 8.4E-06 39.1 3.0 20 208-228 25-44 (62)
400 cd03299 ABC_ModC_like Archeal 89.2 0.35 7.6E-06 47.9 3.5 30 199-229 18-47 (235)
401 PRK14236 phosphate transporter 89.2 0.35 7.5E-06 49.1 3.5 31 198-229 43-73 (272)
402 TIGR03522 GldA_ABC_ATP gliding 89.2 0.34 7.4E-06 50.1 3.5 30 199-229 21-50 (301)
403 cd03237 ABC_RNaseL_inhibitor_d 89.0 0.29 6.2E-06 49.3 2.7 27 202-229 21-47 (246)
404 PRK13652 cbiO cobalt transport 89.0 0.36 7.9E-06 49.1 3.5 31 198-229 22-52 (277)
405 PRK09580 sufC cysteine desulfu 89.0 0.3 6.5E-06 48.4 2.8 29 200-229 21-49 (248)
406 PRK13644 cbiO cobalt transport 89.0 0.36 7.8E-06 49.1 3.5 32 198-230 20-51 (274)
407 cd03288 ABCC_SUR2 The SUR doma 88.9 0.39 8.4E-06 48.3 3.5 29 200-229 41-69 (257)
408 TIGR03873 F420-0_ABC_ATP propo 88.8 0.35 7.6E-06 48.4 3.2 29 200-229 21-49 (256)
409 PF08477 Miro: Miro-like prote 88.8 0.33 7.2E-06 41.9 2.7 23 208-231 1-23 (119)
410 COG1126 GlnQ ABC-type polar am 88.8 0.28 6E-06 49.6 2.4 24 200-223 22-45 (240)
411 PRK14258 phosphate ABC transpo 88.8 0.37 7.9E-06 48.6 3.3 30 199-229 26-55 (261)
412 PRK10416 signal recognition pa 88.8 3.7 8.1E-05 43.3 10.9 24 204-228 112-135 (318)
413 PF03796 DnaB_C: DnaB-like hel 88.7 0.49 1.1E-05 47.5 4.2 43 190-232 2-45 (259)
414 PRK12608 transcription termina 88.7 0.26 5.7E-06 53.2 2.3 45 430-496 44-88 (380)
415 PRK13642 cbiO cobalt transport 88.5 0.4 8.7E-06 48.8 3.4 29 200-229 27-55 (277)
416 PRK03992 proteasome-activating 88.5 1.3 2.7E-05 47.8 7.4 23 209-232 168-190 (389)
417 PRK13631 cbiO cobalt transport 88.5 0.4 8.7E-06 50.3 3.5 29 200-229 46-74 (320)
418 PRK13634 cbiO cobalt transport 88.5 0.4 8.7E-06 49.3 3.4 29 200-229 27-55 (290)
419 PF00308 Bac_DnaA: Bacterial d 88.5 2.5 5.5E-05 41.9 9.0 24 208-232 36-59 (219)
420 PRK12726 flagellar biosynthesi 88.5 2.5 5.4E-05 46.1 9.5 27 202-229 202-228 (407)
421 cd03297 ABC_ModC_molybdenum_tr 88.4 0.42 9E-06 46.4 3.4 30 198-229 16-45 (214)
422 PRK09452 potA putrescine/sperm 88.4 0.4 8.6E-06 51.6 3.4 31 198-229 32-62 (375)
423 TIGR02142 modC_ABC molybdenum 88.4 0.51 1.1E-05 50.0 4.2 31 198-229 15-45 (354)
424 PRK11000 maltose/maltodextrin 88.3 0.4 8.7E-06 51.2 3.4 31 198-229 21-51 (369)
425 PRK12723 flagellar biosynthesi 88.2 3.1 6.7E-05 45.2 10.1 125 204-361 172-303 (388)
426 PF05673 DUF815: Protein of un 88.2 1.2 2.7E-05 45.5 6.6 34 187-231 43-76 (249)
427 PRK11153 metN DL-methionine tr 88.2 0.43 9.3E-06 50.5 3.5 31 198-229 23-53 (343)
428 TIGR02868 CydC thiol reductant 88.2 0.37 8.1E-06 53.3 3.2 30 198-228 353-382 (529)
429 PRK13536 nodulation factor exp 88.1 0.42 9.2E-06 50.6 3.4 30 199-229 60-89 (340)
430 PRK03695 vitamin B12-transport 88.0 0.39 8.5E-06 48.0 2.9 30 198-228 14-43 (248)
431 PRK13633 cobalt transporter AT 88.0 0.44 9.6E-06 48.6 3.3 32 198-230 28-59 (280)
432 COG0563 Adk Adenylate kinase a 87.9 0.41 8.8E-06 46.3 2.8 22 208-230 2-23 (178)
433 PRK09183 transposase/IS protei 87.8 0.31 6.6E-06 49.7 2.1 28 203-231 99-126 (259)
434 PRK14257 phosphate ABC transpo 87.7 0.48 1E-05 49.9 3.5 32 198-230 100-131 (329)
435 PRK06921 hypothetical protein; 87.6 1.4 2.9E-05 45.3 6.6 26 205-231 116-141 (266)
436 PRK13636 cbiO cobalt transport 87.6 0.49 1.1E-05 48.4 3.4 32 198-230 24-55 (283)
437 TIGR00665 DnaB replicative DNA 87.6 0.75 1.6E-05 49.8 5.0 45 187-231 175-220 (434)
438 TIGR00235 udk uridine kinase. 87.6 0.43 9.2E-06 46.4 2.8 25 205-230 5-29 (207)
439 PRK08084 DNA replication initi 87.6 0.89 1.9E-05 45.4 5.2 25 206-231 45-69 (235)
440 PRK12724 flagellar biosynthesi 87.6 2.1 4.6E-05 47.1 8.4 24 204-228 221-244 (432)
441 COG1134 TagH ABC-type polysacc 87.6 0.46 1E-05 48.5 3.1 30 198-228 45-74 (249)
442 TIGR02322 phosphon_PhnN phosph 87.5 0.46 9.9E-06 44.7 2.9 24 206-230 1-24 (179)
443 TIGR01241 FtsH_fam ATP-depende 87.5 1.3 2.9E-05 49.0 7.0 23 209-232 91-113 (495)
444 PTZ00454 26S protease regulato 87.4 1.9 4E-05 47.0 7.8 26 206-232 179-204 (398)
445 PRK13537 nodulation ABC transp 87.4 0.48 1E-05 49.3 3.2 29 200-229 27-55 (306)
446 TIGR03269 met_CoM_red_A2 methy 87.4 0.47 1E-05 52.6 3.3 32 198-230 18-49 (520)
447 COG1156 NtpB Archaeal/vacuolar 87.3 0.37 8E-06 52.4 2.4 56 441-496 42-98 (463)
448 COG1136 SalX ABC-type antimicr 87.3 0.48 1E-05 47.8 3.1 26 198-223 23-48 (226)
449 COG3842 PotA ABC-type spermidi 87.3 0.47 1E-05 50.8 3.1 35 193-228 17-52 (352)
450 KOG0733|consensus 87.2 1.9 4.1E-05 49.4 7.9 163 209-396 226-411 (802)
451 COG4172 ABC-type uncharacteriz 87.1 0.53 1.1E-05 51.5 3.4 34 194-228 300-334 (534)
452 COG1120 FepC ABC-type cobalami 87.1 0.49 1.1E-05 48.7 3.0 31 198-229 20-50 (258)
453 PRK10636 putative ABC transpor 87.0 0.46 9.9E-06 54.4 3.1 31 198-229 19-49 (638)
454 PRK12727 flagellar biosynthesi 87.0 3.1 6.7E-05 47.2 9.4 28 201-229 345-372 (559)
455 cd03289 ABCC_CFTR2 The CFTR su 86.8 0.56 1.2E-05 48.2 3.3 29 200-229 24-52 (275)
456 TIGR01186 proV glycine betaine 86.8 0.55 1.2E-05 50.4 3.3 30 198-228 11-40 (363)
457 TIGR03263 guanyl_kin guanylate 86.8 0.46 1E-05 44.5 2.5 24 206-230 1-24 (180)
458 cd04148 RGK RGK subfamily. Th 86.8 1.2 2.6E-05 43.9 5.5 21 208-229 2-22 (221)
459 PRK11176 lipid transporter ATP 86.8 0.5 1.1E-05 52.9 3.1 32 198-230 361-392 (582)
460 COG3840 ThiQ ABC-type thiamine 86.7 0.54 1.2E-05 46.6 2.9 28 200-228 19-46 (231)
461 cd00561 CobA_CobO_BtuR ATP:cor 86.7 7.5 0.00016 37.2 10.7 52 322-373 72-128 (159)
462 PRK11174 cysteine/glutathione 86.6 0.51 1.1E-05 52.9 3.2 30 198-228 368-397 (588)
463 PF13521 AAA_28: AAA domain; P 86.6 0.41 8.8E-06 44.5 2.0 22 208-230 1-22 (163)
464 PRK11147 ABC transporter ATPas 86.5 0.48 1E-05 54.1 2.9 31 198-229 21-51 (635)
465 PRK11607 potG putrescine trans 86.5 0.6 1.3E-05 50.2 3.5 30 199-229 38-67 (377)
466 PLN03073 ABC transporter F fam 86.5 0.47 1E-05 55.2 2.9 30 198-228 195-224 (718)
467 TIGR03258 PhnT 2-aminoethylpho 86.5 0.6 1.3E-05 49.9 3.4 31 198-229 23-53 (362)
468 TIGR01425 SRP54_euk signal rec 86.4 3.4 7.3E-05 45.6 9.2 21 207-228 101-121 (429)
469 PRK15064 ABC transporter ATP-b 86.4 0.53 1.2E-05 52.3 3.1 30 199-229 20-49 (530)
470 PRK11819 putative ABC transpor 86.4 0.54 1.2E-05 52.8 3.1 32 198-230 25-56 (556)
471 PF13238 AAA_18: AAA domain; P 86.3 0.59 1.3E-05 40.5 2.7 21 209-230 1-21 (129)
472 PRK00300 gmk guanylate kinase; 86.3 0.58 1.2E-05 44.9 2.9 25 205-230 4-28 (205)
473 TIGR02881 spore_V_K stage V sp 86.3 0.54 1.2E-05 47.5 2.8 28 202-230 38-65 (261)
474 PRK10762 D-ribose transporter 86.3 0.56 1.2E-05 51.7 3.2 31 198-229 22-52 (501)
475 PRK15134 microcin C ABC transp 86.2 0.58 1.2E-05 52.0 3.3 31 198-229 27-57 (529)
476 PRK05480 uridine/cytidine kina 86.1 0.61 1.3E-05 45.2 3.0 26 204-230 4-29 (209)
477 PRK10938 putative molybdenum t 86.1 0.56 1.2E-05 51.5 3.1 29 199-228 22-50 (490)
478 PRK14531 adenylate kinase; Pro 86.0 0.6 1.3E-05 44.5 2.9 23 207-230 3-25 (183)
479 TIGR02633 xylG D-xylose ABC tr 86.0 0.59 1.3E-05 51.4 3.2 30 199-229 20-49 (500)
480 COG0488 Uup ATPase components 86.0 0.59 1.3E-05 52.7 3.2 33 198-231 340-372 (530)
481 COG1155 NtpA Archaeal/vacuolar 85.9 0.34 7.3E-06 54.1 1.2 119 197-353 250-378 (588)
482 PRK10790 putative multidrug tr 85.9 0.6 1.3E-05 52.5 3.2 30 198-228 359-388 (592)
483 TIGR03015 pepcterm_ATPase puta 85.8 6 0.00013 39.3 10.0 22 208-230 45-66 (269)
484 PRK08233 hypothetical protein; 85.7 0.65 1.4E-05 43.2 2.9 23 206-229 3-25 (182)
485 COG3839 MalK ABC-type sugar tr 85.6 0.67 1.5E-05 49.4 3.2 29 199-228 22-50 (338)
486 TIGR02204 MsbA_rel ABC transpo 85.5 0.66 1.4E-05 51.8 3.3 30 199-229 359-388 (576)
487 TIGR01193 bacteriocin_ABC ABC- 85.5 0.62 1.3E-05 53.6 3.1 31 198-229 492-522 (708)
488 PRK06217 hypothetical protein; 85.5 0.65 1.4E-05 44.2 2.8 23 207-230 2-24 (183)
489 PRK13341 recombination factor 85.4 1.7 3.8E-05 50.7 6.7 27 204-231 50-76 (725)
490 PF13245 AAA_19: Part of AAA d 85.4 0.71 1.5E-05 38.5 2.7 26 206-231 9-35 (76)
491 PRK15064 ABC transporter ATP-b 85.4 0.63 1.4E-05 51.7 3.1 30 199-229 338-367 (530)
492 COG0194 Gmk Guanylate kinase [ 85.4 1.9 4.1E-05 42.5 5.9 99 205-352 3-101 (191)
493 PRK09700 D-allose transporter 85.3 0.66 1.4E-05 51.3 3.2 30 199-229 282-311 (510)
494 PRK10261 glutathione transport 85.2 0.7 1.5E-05 52.7 3.4 32 198-230 34-65 (623)
495 TIGR03719 ABC_ABC_ChvD ATP-bin 85.2 0.66 1.4E-05 51.9 3.1 31 198-229 23-53 (552)
496 PRK09536 btuD corrinoid ABC tr 85.2 0.73 1.6E-05 50.1 3.3 29 200-229 23-51 (402)
497 cd00984 DnaB_C DnaB helicase C 85.1 1.6 3.4E-05 42.9 5.4 29 203-231 10-38 (242)
498 COG0411 LivG ABC-type branched 85.1 0.56 1.2E-05 47.9 2.2 32 192-223 15-47 (250)
499 PRK10636 putative ABC transpor 85.1 0.66 1.4E-05 53.1 3.1 31 199-230 331-361 (638)
500 PRK10522 multidrug transporter 85.1 0.69 1.5E-05 51.6 3.2 31 198-229 341-371 (547)
No 1
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.4e-118 Score=931.36 Aligned_cols=380 Identities=58% Similarity=0.851 Sum_probs=360.3
Q ss_pred cCCChHHHHHHHHHHHhcCcchhhhhhhhcccccccCceeeecCCe----eEEccchhhhhcccccccCCeEEEEEeccc
Q psy13776 39 ASSRAAEISSILEERILGSAPKAVAYRQMSLLLRRPPGREAYPGDV----FYLHSRLLERSAKMSEAHGGGSLTALPVIE 114 (539)
Q Consensus 39 ~~~~~~ei~~~l~~~i~~~~~~~~~~~ei~g~~~e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~ 114 (539)
|.++++|++++++++|++|+...+. ++.|.+.+|||+ +||.+. +.+|+++|+++.+|++||||+
T Consensus 1 ~~~~~~ei~~~i~~~i~~~~~~~~~---------~~~g~V~sv~DgIa~v~Gl~~~---~~~E~~ef~~~v~G~alnle~ 68 (504)
T COG0056 1 MQLNPTEISSLIKQQIENFDVEAEV---------KEVGTVISVGDGIARVSGLENV---MAGELVEFPGGVKGMALNLEE 68 (504)
T ss_pred CCCcHHHHHHHHHHHHHhcchhhhh---------hccceEEEEecceEEEecCchh---hcCceEEecCCcEEEEEeccc
Confidence 3567899999999999999998888 899999999999 888888 999999999999999999999
Q ss_pred cCCCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhccc---c--cccccccccc
Q psy13776 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIINQ---K--RKKRRRLLKY 187 (539)
Q Consensus 115 ~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~~---~--~~~r~ri~~~ 187 (539)
|+|+++++|+...|++|+.|++||+.+.||||++|+|||+ +|+|+||++++..+...+. . ...|+.+ +
T Consensus 69 ---d~VG~vi~g~~~~i~eG~~v~~Tg~i~~Vpvg~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV--~ 143 (504)
T COG0056 69 ---DSVGAVILGDYSDIKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSV--N 143 (504)
T ss_pred ---cceeEEEecCCccccCCcEEEeeCceEEEecchhhcceeecCCCCccCCCCCccccccCccccccCceeccccc--C
Confidence 9999999999999999999999999999999999999999 9999999999976654331 1 3455556 9
Q ss_pred ccccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhh
Q psy13776 188 NLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDL 267 (539)
Q Consensus 188 epl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~ 267 (539)
|||+|||++||+|+|||||||++|+||+|||||++|+|+|+||+..
T Consensus 144 ePlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIAidtIiNQk~~---------------------------------- 189 (504)
T COG0056 144 EPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGS---------------------------------- 189 (504)
T ss_pred chhhhhhHHHhhhcccCCCceEEEeccCcCCcchhhHHHHHhcccC----------------------------------
Confidence 9999999999999999999999999999999999999999999854
Q ss_pred hhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcE
Q psy13776 268 SKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHA 347 (539)
Q Consensus 268 ~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdV 347 (539)
+++|||||||||.++|++++++|+++|+|+||+||+|+++||+++||+|||+|||||||||++|+||
T Consensus 190 -------------~v~CIYVAIGQK~stva~vv~tL~e~gAmdyTiVV~AsASd~a~lqYLaPy~g~a~aE~f~~~G~dv 256 (504)
T COG0056 190 -------------GVKCIYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAGCAMAEYFRDNGKDV 256 (504)
T ss_pred -------------CcEEEEEEcccchHHHHHHHHHHHHcCCccceEEEEecCCcchhhhhhhhhhhhHHHHHHHhcCCeE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCcccccccc
Q psy13776 348 LIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVIS 427 (539)
Q Consensus 348 Lli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~s 427 (539)
|+||||||+||.|||||||+++||||||+|||||||+||||||||+++++++|+|||||+|+++|++||+|+|||+|++|
T Consensus 257 LIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIETqagDvSAyIpTNVIS 336 (504)
T COG0056 257 LIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQAGDVSAYIPTNVIS 336 (504)
T ss_pred EEEecCchHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhhccccCCCceEeeeeEEeccCceeeecccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccc
Q psy13776 428 ITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSR 507 (539)
Q Consensus 428 itDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr 507 (539)
||||||||+.+||++| ++||||+|+||||
T Consensus 337 ITDGQIfl~t~LFn~G---------------------------------------------------~rPAInvGlSVSR 365 (504)
T COG0056 337 ITDGQIFLETDLFNAG---------------------------------------------------IRPAINVGLSVSR 365 (504)
T ss_pred ecCCcEEeehhhhhcC---------------------------------------------------CCccccCCceeec
Confidence 9999999999999999 8999999999999
Q ss_pred cCchhhhHHHHHhh-hhhhHHHHHHHhhhh
Q psy13776 508 VGSAAQTRAMKQTG-KIRSWNGWLSLLKQL 536 (539)
Q Consensus 508 ~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~ 536 (539)
||+++|+++|||++ .+|. .|+.|+|+
T Consensus 366 vGssAQ~kamkkvag~lrl---~laqYrel 392 (504)
T COG0056 366 VGSAAQIKAMKKVAGSLRL---ILAQYREL 392 (504)
T ss_pred cchHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 99999999996655 5555 88888876
No 2
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=5.1e-107 Score=872.23 Aligned_cols=379 Identities=44% Similarity=0.664 Sum_probs=352.9
Q ss_pred ChHHHHHHHHHHHhcCcchhhhhhhhcccccccCceeeecCCe----eEEccchhhhhcccccccCCeEEEEEeccccCC
Q psy13776 42 RAAEISSILEERILGSAPKAVAYRQMSLLLRRPPGREAYPGDV----FYLHSRLLERSAKMSEAHGGGSLTALPVIETQA 117 (539)
Q Consensus 42 ~~~ei~~~l~~~i~~~~~~~~~~~ei~g~~~e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~~~ 117 (539)
.++||+++++++|++|+.+.+. +..|.+.+|+|+ .|+.++ ..+|++.|+++..|+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---------~~~G~V~~v~g~ii~v~gl~~~---~~gEl~~i~~~~~g~Vi~l~~--- 68 (497)
T TIGR03324 4 VLDKAFQQLDQARESFQPQLTV---------QEVGTVESVSTGIARVHGLPGV---GFEELLRFPGGLLGIAFNVDE--- 68 (497)
T ss_pred CHHHHHHHHHHHHHhcCCCcce---------eEEEEEEEEeceEEEEEccCCC---CcCCEEEECCCcEEEEEEEcC---
Confidence 4789999999999999999888 889999999999 566667 999999998789999999999
Q ss_pred CcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccc
Q psy13776 118 GDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSA 192 (539)
Q Consensus 118 d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~T 192 (539)
+++++++|+++.||++|+.|++|+++++||||++|||||+ +|+|+||++++.....++ .+|+...|.++++||+|
T Consensus 69 ~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGRVvd~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~~v~epl~T 148 (497)
T TIGR03324 69 DEVGVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQT 148 (497)
T ss_pred CeEEEEEecCCcCCcCCCEEEECCCCCeEECCHhhCcCEECCCCCCcCCCCCCCCCceeehhccCcCccccCCCCchhhc
Confidence 9999999999999999999999999999999999999999 999999999876544322 22333344444999999
Q ss_pred cceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHH
Q psy13776 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 272 (539)
Q Consensus 193 GIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~ 272 (539)
|||+||+|+|||||||++|||++|||||+|+++||+||++.
T Consensus 149 GI~aID~l~pigrGQR~~Ifg~~g~GKT~Lal~~I~~q~~~--------------------------------------- 189 (497)
T TIGR03324 149 GLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQKGR--------------------------------------- 189 (497)
T ss_pred CCEEEeccCCcccCCEEEeecCCCCCHHHHHHHHHHHhcCC---------------------------------------
Confidence 99999999999999999999999999999999999999753
Q ss_pred HhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEec
Q psy13776 273 AYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYD 352 (539)
Q Consensus 273 ~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~D 352 (539)
+++|||++||||+|||++|+++++++++|+||++|++|+|+||++|++|||+||||||||||+|+|||++||
T Consensus 190 --------dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~aiAEyfrd~G~~VLlv~D 261 (497)
T TIGR03324 190 --------NVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYD 261 (497)
T ss_pred --------CcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCcccccccccccee
Q psy13776 353 DLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432 (539)
Q Consensus 353 slTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGq 432 (539)
||||||+||||||+++||||+|+||||||||+||||+||||+++...++||||+||+|++|+||++||||||++||||||
T Consensus 262 dlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~~~~~GSITal~~V~~~~dD~s~pI~d~v~sItDGq 341 (497)
T TIGR03324 262 DLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQNISAYIPTNLISITDGQ 341 (497)
T ss_pred ChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccCCCCCcceeEEEEEEcCCCCCCCcchHhheeccceE
Confidence 99999999999999999999999999999999999999999998766799999999999999999999999999999999
Q ss_pred EEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchh
Q psy13776 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAA 512 (539)
Q Consensus 433 IvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~ 512 (539)
|||||+||++| +|||||++.|+||+|+++
T Consensus 342 IvLsr~La~~G---------------------------------------------------~~PAIDv~~SvSRv~~~~ 370 (497)
T TIGR03324 342 IYLSPTLFELG---------------------------------------------------VLPAVDVGKSVSRVGGKA 370 (497)
T ss_pred EEEcHHHHhCC---------------------------------------------------CCCcCCCccccccCCccc
Confidence 99999999999 799999999999999999
Q ss_pred hhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 513 QTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 513 ~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
|+++| +.+..+|+ +|+.|+|+
T Consensus 371 ~~~~~~~~a~~lr~---~la~y~e~ 392 (497)
T TIGR03324 371 QLAAYRAVAGDLKL---AYAQFEEL 392 (497)
T ss_pred cCHHHHHHHHHHHH---HHHHHHHH
Confidence 99999 55667777 88999886
No 3
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=6.8e-106 Score=866.13 Aligned_cols=381 Identities=51% Similarity=0.761 Sum_probs=354.5
Q ss_pred CCChHHHHHHHHHHHhcCcchhhhhhhhcccccccCceeeecCCe----eEEccchhhhhcccccccCCeEEEEEecccc
Q psy13776 40 SSRAAEISSILEERILGSAPKAVAYRQMSLLLRRPPGREAYPGDV----FYLHSRLLERSAKMSEAHGGGSLTALPVIET 115 (539)
Q Consensus 40 ~~~~~ei~~~l~~~i~~~~~~~~~~~ei~g~~~e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~ 115 (539)
+++++|+.++++++|.+|+.+... +..|++.+|+|+ .|+.++ ..+|++.|+++..|+|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~G~V~~v~g~i~~v~gl~~~---~~ge~~~i~~~~~g~V~~l~~- 68 (502)
T PRK13343 2 KSNADEWLARIRQRIARYEPQPDA---------REIGRVESVGDGIAFVSGLPDA---ALDELLRFEGGSRGFAFNLEE- 68 (502)
T ss_pred CCCHHHHHHHHHHHHhcCCCccee---------EEeeEEEEEeCCEEEEeCCCCC---CCCCEEEECCCcEEEEEEecC-
Confidence 467899999999999999988877 789999999998 566666 899999998889999999999
Q ss_pred CCCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccc
Q psy13776 116 QAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLL 190 (539)
Q Consensus 116 ~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl 190 (539)
+.+++++|+++.++++|+.|++|+++++||||++|||||+ +|+||||++++...+..+ .+|++..|.++++||
T Consensus 69 --~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGRVid~lG~piDg~~~i~~~~~~~i~~~ap~~~~R~~v~epl 146 (502)
T PRK13343 69 --ELVGAVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPL 146 (502)
T ss_pred --CeEEEEEeeCCCCCCCCCEeEecCCcceeecCHHhcCCEECCCCCcccCCCCCCCCceecccCCCcChhhcCCCCccc
Confidence 9999999999999999999999999999999999999999 999999999886544322 223333333349999
Q ss_pred cccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhH
Q psy13776 191 SAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQ 270 (539)
Q Consensus 191 ~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~ 270 (539)
+||||+||+|+|||||||++|||++|||||+|+++||+||++.
T Consensus 147 ~TGIkaID~l~pigrGQR~~I~g~~g~GKt~Lal~~i~~~~~~------------------------------------- 189 (502)
T PRK13343 147 QTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAIINQKDS------------------------------------- 189 (502)
T ss_pred ccCCceeccccccccCCEEEeeCCCCCCccHHHHHHHHhhcCC-------------------------------------
Confidence 9999999999999999999999999999999999999998753
Q ss_pred HHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEE
Q psy13776 271 AVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALII 350 (539)
Q Consensus 271 a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli 350 (539)
+++|||++||||+|||++|+++++++++|+||+||++|+|+||++||+|||+|||+||||||+|+|||++
T Consensus 190 ----------dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~aiAEyfrd~G~~VLlv 259 (502)
T PRK13343 190 ----------DVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQGQDALIV 259 (502)
T ss_pred ----------CEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccc
Q psy13776 351 YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD 430 (539)
Q Consensus 351 ~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitD 430 (539)
||||||||+||||||+++||||+|+|||||+||.||||+||||+++..+++||||+||+|+|++||++||||||++||||
T Consensus 260 ~DdlTr~A~A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~~~~gGSITal~~V~~~~dD~s~pI~~~v~sItD 339 (502)
T PRK13343 260 YDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSLTALPIIETLAGELSAYIPTNLISITD 339 (502)
T ss_pred ecchHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCCCCCCcceEEEEEEEcCCCCCCCcchhhhhcccc
Confidence 99999999999999999999999999999999999999999999987778999999999999999999999999999999
Q ss_pred eeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCc
Q psy13776 431 GQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGS 510 (539)
Q Consensus 431 GqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~ 510 (539)
|||||||+||++| +|||||++.|+||+|+
T Consensus 340 GqIvLsr~La~~G---------------------------------------------------~~PAIDv~~SvSRv~~ 368 (502)
T PRK13343 340 GQIYLDSDLFAAG---------------------------------------------------QRPAVDVGLSVSRVGG 368 (502)
T ss_pred eEEEECHHHHhCC---------------------------------------------------CCCccCCccchhccCc
Confidence 9999999999999 7999999999999999
Q ss_pred hhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 511 AAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 511 ~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
++|+++| +.+.++|. +|+.|+|+
T Consensus 369 ~~~~~~~~~~a~~lr~---~la~y~e~ 392 (502)
T PRK13343 369 KAQHPAIRKESGRLRL---DYAQFLEL 392 (502)
T ss_pred cccCHHHHHHHHHHHH---HHHHHHHH
Confidence 9999999 55667777 89999886
No 4
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=4.4e-105 Score=853.51 Aligned_cols=366 Identities=47% Similarity=0.694 Sum_probs=329.3
Q ss_pred ccCceeeecCCe-------eEEccchhhhhcccccc---cCC-eEEEEEeccccCCC-cEEEEcccCCcCCCCCCEEEEe
Q psy13776 73 RPPGREAYPGDV-------FYLHSRLLERSAKMSEA---HGG-GSLTALPVIETQAG-DVSAYIPTNVISITDGQIFLET 140 (539)
Q Consensus 73 e~~G~v~~IGDg-------~gL~~~~~~~~gEVV~f---~~g-~~G~vl~l~~~~~d-~v~l~~~g~~~gi~~G~~V~~t 140 (539)
+++|.+.+|+++ +||.++ +++|+|+| +++ ..|+|+||++ | ++++++|+++.++++|++|++|
T Consensus 38 ~~~G~V~~v~~gia~v~~v~Gl~~~---~~gElv~f~~~~~~~~~G~vlnl~~---d~~v~~v~lg~~~gI~~G~~V~~t 111 (574)
T PTZ00185 38 EMIGYVHSIDGTIATLIPAPGNPGV---AYNTIIMIQVSPTTFAAGLVFNLEK---DGRIGIILMDNITEVQSGQKVMAT 111 (574)
T ss_pred eeeEEEEEEcCeEEEEeecCCCccc---ccCceEEEEcCCCCeEEEEEEEecC---CCeEEEEEecCccCCCCCCEEEEC
Confidence 689999999773 366667 99999999 434 4899999999 9 6999999999999999999999
Q ss_pred cccccccCCCcccceeE--eeeccCCC------CCcccch-h--c-cccccccccccccccccccceeeeeeeeccccce
Q psy13776 141 ELFYKVDRGSINCGQLI--IGDRQTGK------TALAIDT-I--I-NQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQR 208 (539)
Q Consensus 141 g~~~~VpVG~~LLGRVv--lG~PiDgk------~~i~~~~-~--~-~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR 208 (539)
+++++||||++|||||+ +|+|+||+ +++..++ . + ..+|++..|-++++||+||||+||+|+|||||||
T Consensus 112 g~~~~VpVG~~lLGRVvD~lG~PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR 191 (574)
T PTZ00185 112 GKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQR 191 (574)
T ss_pred CCccEEECCcccccCEECCCCcccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCE
Confidence 99999999999999999 99999998 4443331 2 1 1223333333449999999999999999999999
Q ss_pred eeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEe
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVA 288 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~ 288 (539)
++||||+|||||+||+++|+||+... + ...+++.++|||++
T Consensus 192 ~lIfGd~GtGKTtLAld~IinQ~~~~--------------------~-------------------~~~~~~~~v~Vyva 232 (574)
T PTZ00185 192 ELIVGDRQTGKTSIAVSTIINQVRIN--------------------Q-------------------QILSKNAVISIYVS 232 (574)
T ss_pred EEeecCCCCChHHHHHHHHHhhhhhc--------------------c-------------------ccccCCCCEEEEEE
Confidence 99999999999999999999998430 0 00112357999999
Q ss_pred eccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhcc
Q psy13776 289 IGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLL 368 (539)
Q Consensus 289 IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~l 368 (539)
||||+|||+++++.|+++|+|+||++|++|+|+||++||++||+|||+||||||+|+|||++||||||||+||||||+++
T Consensus 233 IGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REISLll 312 (574)
T PTZ00185 233 IGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLL 312 (574)
T ss_pred eccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCC
Q psy13776 369 RRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNL 448 (539)
Q Consensus 369 gepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l 448 (539)
||||+|+|||||+||+||||+||||+++...|+||||+||+|+||+||++||||||++|||||||||||+||++|
T Consensus 313 grpPgRegYPgdVF~lhsrLlERAg~l~~~~G~GSITAlpiV~t~adDis~pIptnviSItDGqIvLsr~Lf~~G----- 387 (574)
T PTZ00185 313 RRPPGREAYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGG----- 387 (574)
T ss_pred CCCCCCCCcCccHHHHhHHHHHhcccccCCCCCcceEEEEEEEccCCCCCCcchHhhhhhcCeEEEEcHHHHhCC-----
Confidence 999999999999999999999999999876789999999999999999999999999999999999999999999
Q ss_pred CCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHH
Q psy13776 449 EPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWN 527 (539)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~ 527 (539)
+||||||+.|+||+|+++|+++| +.+..+|.
T Consensus 388 ----------------------------------------------iyPAIDVl~SvSRvg~~aq~~~~k~vAg~lr~-- 419 (574)
T PTZ00185 388 ----------------------------------------------QRPAVNIGLSVSRVGSSAQNVAMKAVAGKLKG-- 419 (574)
T ss_pred ----------------------------------------------CCCCcCCcccccccCCccCCHHHHHHHHHHHH--
Confidence 79999999999999999999999 55667777
Q ss_pred HHHHHhhhhh
Q psy13776 528 GWLSLLKQLY 537 (539)
Q Consensus 528 ~~~~~~~~~~ 537 (539)
+|+.|+|+-
T Consensus 420 -~LaqY~El~ 428 (574)
T PTZ00185 420 -ILAEYRKLA 428 (574)
T ss_pred -HHHHHHHHH
Confidence 999999873
No 5
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=1.9e-104 Score=849.45 Aligned_cols=357 Identities=54% Similarity=0.795 Sum_probs=332.8
Q ss_pred ccCceeeecCCe----eEEccchhhhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccccccC
Q psy13776 73 RPPGREAYPGDV----FYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKVDR 148 (539)
Q Consensus 73 e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpV 148 (539)
+..|.+.+|+|+ .|+.++ ..+|++.|+++..|+|+++++ +++++++|+++.++++|++|++|++.++||+
T Consensus 5 ~~~G~V~~v~~~ii~v~Gl~~~---~~ge~~~i~~~~~g~vi~~~~---~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpv 78 (485)
T CHL00059 5 VNTGTVLQVGDGIARIYGLDEV---MAGELVEFEDGTIGIALNLES---NNVGVVLMGDGLMIQEGSSVKATGKIAQIPV 78 (485)
T ss_pred eeeEEEEEEeccEEEEeccccC---CcCCEEEECCCCEEEEEEEcC---CEEEEEEeeCCCCCCCCCEEEECCCcceEEc
Confidence 678999999999 667666 999999998889999999999 9999999999999999999999999999999
Q ss_pred CCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCCCchHhH
Q psy13776 149 GSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALA 223 (539)
Q Consensus 149 G~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa 223 (539)
|++|||||+ +|+|+||++++......+ .+|.+..|-++++||+||||+||+|+|||||||++|||++|||||+|+
T Consensus 79 g~~llGRVvd~lG~piDg~~~~~~~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~La 158 (485)
T CHL00059 79 SEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 158 (485)
T ss_pred CHhhcCCEECCCCCeeCCCCCcCCCccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHH
Confidence 999999999 999999998876543222 223333333449999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHH
Q psy13776 224 IDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRL 303 (539)
Q Consensus 224 ~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l 303 (539)
++||+||++. +++|||++||||+|||++|++++
T Consensus 159 l~~I~~q~~~-----------------------------------------------dv~cV~~~IGer~rev~e~~~~l 191 (485)
T CHL00059 159 TDTILNQKGQ-----------------------------------------------NVICVYVAIGQKASSVAQVVTTL 191 (485)
T ss_pred HHHHHhcccC-----------------------------------------------CeEEEEEEecCCchHHHHHHHHh
Confidence 9999999753 47999999999999999999999
Q ss_pred hcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhh
Q psy13776 304 TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFY 383 (539)
Q Consensus 304 ~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~ 383 (539)
+++++|+||++|++|+|+||.+||+|||+|||||||||++|+|||++||||||||+||||||+++||||+++||||||||
T Consensus 192 ~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A~A~REisl~l~epPgr~gYP~~vF~ 271 (485)
T CHL00059 192 QERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFY 271 (485)
T ss_pred hcccchhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhcCCCCCcCCcCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEeccccc
Q psy13776 384 LHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRL 463 (539)
Q Consensus 384 ~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~ 463 (539)
.||||+||||++++++++||||+||+|+|++||++||||||++|||||||||||+||++|
T Consensus 272 ~~srLlERag~~~~~~~~GSITal~~V~~~~dD~s~pI~~~v~sItDGqIvLsr~La~~G-------------------- 331 (485)
T CHL00059 272 LHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAG-------------------- 331 (485)
T ss_pred HhHHHHHhhhcccCCCCCcceEEEEEEEccCCCCCCcchHhhhhhcceEEEEcHHHHhCC--------------------
Confidence 999999999999877789999999999999999999999999999999999999999999
Q ss_pred ccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 464 IKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 464 ~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
+||||||++||||+|+++|+++| +.+.++|. +|+.|+|+
T Consensus 332 -------------------------------~~PAIDv~~SvSRvg~~aq~~~~~~~a~~lr~---~la~y~e~ 371 (485)
T CHL00059 332 -------------------------------IRPAINVGISVSRVGSAAQIKAMKQVAGKLKL---ELAQFAEL 371 (485)
T ss_pred -------------------------------CCCCcCcccchhcCCchhhcHHHHHHHHHHHH---HHHHHHHH
Confidence 79999999999999999999999 55677777 88999886
No 6
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=1e-103 Score=851.85 Aligned_cols=381 Identities=58% Similarity=0.852 Sum_probs=352.4
Q ss_pred CChHHHHHHHHHHHhcCcchhhhhhhhcccccccCceeeecCCe----eEEccchhhhhcccccccCCeEEEEEeccccC
Q psy13776 41 SRAAEISSILEERILGSAPKAVAYRQMSLLLRRPPGREAYPGDV----FYLHSRLLERSAKMSEAHGGGSLTALPVIETQ 116 (539)
Q Consensus 41 ~~~~ei~~~l~~~i~~~~~~~~~~~ei~g~~~e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~~ 116 (539)
++.+++++++++++++|+++.+. +..|.+.+|+++ .|+.++ ..+|++.|+++..|+|+++++
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~---------~~~G~V~~v~g~ii~v~g~~~~---~~ge~~~i~~~~~g~Vi~~~~-- 67 (501)
T TIGR00962 2 LKLEEISELIKQEIKNFEKDIEM---------EEVGTVVSVGDGIARVYGLENV---MSGELIEFEGGVQGIALNLEE-- 67 (501)
T ss_pred CChHHHHHHHHHHHHhcCCccee---------EEEEEEEEEeCCEEEEECCcCC---CCCCEEEECCCeEEEEEEecC--
Confidence 35789999999999999999888 789999999998 556556 899999998788999999999
Q ss_pred CCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhcc---cccccccccccccccc
Q psy13776 117 AGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLS 191 (539)
Q Consensus 117 ~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~ 191 (539)
+.+.+++|+++.+++.|+.|++|+++++||+|++|||||+ +|+|+||++++......+ .+|....|.++++||+
T Consensus 68 -~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~vg~~llGRV~d~~G~pld~~~~~~~~~~~~i~~~~p~~~~R~~i~~pl~ 146 (501)
T TIGR00962 68 -DSVGAVIMGDYSNIREGSTVKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPIDSDEFRPIEKIAPGVMERKSVHEPLQ 146 (501)
T ss_pred -CeEEEEEecCCcCCCCCCeeEecCCccEEecChHhcCCEeCCCCCeeCCCCCcCCCCceeeecCCCChhhcCCcCceec
Confidence 9999999999999999999999999999999999999999 999999998875443211 2233334444499999
Q ss_pred ccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHH
Q psy13776 192 AGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271 (539)
Q Consensus 192 TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a 271 (539)
||||+||+|+|||||||++|||++|||||+|+++||+||++.
T Consensus 147 TGi~aID~l~pigrGQr~~I~g~~g~GKt~Lal~~i~~~~~~-------------------------------------- 188 (501)
T TIGR00962 147 TGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDTIINQKDS-------------------------------------- 188 (501)
T ss_pred cCCceeeccCCcccCCEEEeecCCCCCccHHHHHHHHhhcCC--------------------------------------
Confidence 999999999999999999999999999999988999999753
Q ss_pred HHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEe
Q psy13776 272 VAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIY 351 (539)
Q Consensus 272 ~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~ 351 (539)
+++|||++||||+|||++|+++++++++|+||++|++|+|+||.+|++|||+|||+||||||+|+|||++|
T Consensus 189 ---------dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLlv~ 259 (501)
T TIGR00962 189 ---------DVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTMAEYFRDNGKHALIIY 259 (501)
T ss_pred ---------CeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccce
Q psy13776 352 DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDG 431 (539)
Q Consensus 352 DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDG 431 (539)
||+||||+||||||+++||||+++|||||+||.||||+||||++++..|+||||+||+|++|+||++||||||++|||||
T Consensus 260 Ddltr~A~A~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~~~g~GSITal~~V~~~~dD~s~pI~~~~~sItDG 339 (501)
T TIGR00962 260 DDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTNVISITDG 339 (501)
T ss_pred cchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccCCCCCcceEEEEEEECCCCCCCCcchHhhhhhcce
Confidence 99999999999999999999999999999999999999999999866678999999999999999999999999999999
Q ss_pred eEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCch
Q psy13776 432 QIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSA 511 (539)
Q Consensus 432 qIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~ 511 (539)
||||||+||++| +||||||+.|+||+|++
T Consensus 340 qIvLsr~La~~G---------------------------------------------------~~PAIdv~~SvSRv~~~ 368 (501)
T TIGR00962 340 QIFLESDLFNSG---------------------------------------------------IRPAINVGLSVSRVGGA 368 (501)
T ss_pred EEEEcHhHHhCC---------------------------------------------------CCCccCCccchhccCcc
Confidence 999999999999 79999999999999999
Q ss_pred hhhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 512 AQTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 512 ~~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
+|.++| +.+.++|. +|++|+|+.
T Consensus 369 ~~~~~~~~~a~~lr~---~la~y~e~~ 392 (501)
T TIGR00962 369 AQIKAMKQVAGSLRL---ELAQYRELE 392 (501)
T ss_pred ccCHHHHHHHHHHHH---HHHHHHHHH
Confidence 999999 55677777 899998863
No 7
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=2.3e-103 Score=849.32 Aligned_cols=382 Identities=58% Similarity=0.844 Sum_probs=353.2
Q ss_pred CCChHHHHHHHHHHHhcCcchhhhhhhhcccccccCceeeecCCe----eEEccchhhhhcccccccCCeEEEEEecccc
Q psy13776 40 SSRAAEISSILEERILGSAPKAVAYRQMSLLLRRPPGREAYPGDV----FYLHSRLLERSAKMSEAHGGGSLTALPVIET 115 (539)
Q Consensus 40 ~~~~~ei~~~l~~~i~~~~~~~~~~~ei~g~~~e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~ 115 (539)
+++.+++++++++++++|+.+++. ...|.+.+|+++ .|+.++ ..+|++.|.++..|+|+++++
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~~---------~~~G~V~~v~g~~v~v~g~~~~---~~ge~~~i~~~~~g~Vi~~~~- 68 (502)
T PRK09281 2 QINPEEISAIIKQQIENFDAEAEV---------EEVGTVISVGDGIARVYGLDNV---MAGELLEFPGGVYGIALNLEE- 68 (502)
T ss_pred CCCHHHHHHHHHHHHHhcCCccee---------EEEEEEEEEeCCEEEEECcccc---ccCCEEEECCCcEEEEEEEcC-
Confidence 346789999999999999999888 788999999988 455555 899999998789999999999
Q ss_pred CCCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccc
Q psy13776 116 QAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLL 190 (539)
Q Consensus 116 ~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl 190 (539)
|.+.+++|+++.|++.|+.|++|+++++||||++|||||+ +|+|+||++++...+..+ .+|++..|.++++||
T Consensus 69 --~~~~~~~~~~~~gi~~g~~V~~~~~~~~v~vg~~llGrv~d~~G~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l 146 (502)
T PRK09281 69 --DNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPL 146 (502)
T ss_pred --CeEEEEEecCcccccCCCeeeecCCceEEecCHHhcCCEEccCCCCcCCCCCCCCCceecccCCCcCccccCCcccee
Confidence 9999999999999999999999999999999999999999 999999998876544322 234444444559999
Q ss_pred cccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhH
Q psy13776 191 SAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQ 270 (539)
Q Consensus 191 ~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~ 270 (539)
+||||+||+|+|||||||++|||++|+|||+||++||+||+..
T Consensus 147 ~TGi~~ID~l~pigrGQr~~Ifg~~g~GKt~lal~~i~~~~~~------------------------------------- 189 (502)
T PRK09281 147 QTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGK------------------------------------- 189 (502)
T ss_pred ecCCeeeecccccccCcEEEeecCCCCCchHHHHHHHHHhcCC-------------------------------------
Confidence 9999999999999999999999999999999999999998753
Q ss_pred HHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEE
Q psy13776 271 AVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALII 350 (539)
Q Consensus 271 a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli 350 (539)
+++|||++||||++||++|+++++++++|+||++|++|+|+||.+|+++||+|||+||||||+|+|||++
T Consensus 190 ----------dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli 259 (502)
T PRK09281 190 ----------DVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIV 259 (502)
T ss_pred ----------CeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccc
Q psy13776 351 YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD 430 (539)
Q Consensus 351 ~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitD 430 (539)
||||||||+||||||+++||||+|+|||||+||.||||+||||+++...++||||+||+|+||+||++||||||++||||
T Consensus 260 ~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~~~~~GSITal~~V~~~~dD~s~pI~d~~~sItD 339 (502)
T PRK09281 260 YDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQAGDVSAYIPTNVISITD 339 (502)
T ss_pred ecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccCCCCCccEEEEEEEECCCCCCCCcchHhhhcccc
Confidence 99999999999999999999999999999999999999999999987667999999999999999999999999999999
Q ss_pred eeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCc
Q psy13776 431 GQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGS 510 (539)
Q Consensus 431 GqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~ 510 (539)
|||||||+||++| +||||||+.|+||+|+
T Consensus 340 GqIvLsr~La~~G---------------------------------------------------~~PAIdv~~SvSRv~~ 368 (502)
T PRK09281 340 GQIFLESDLFNAG---------------------------------------------------IRPAINVGISVSRVGG 368 (502)
T ss_pred eEEEEcHHHHhCC---------------------------------------------------CCCccCCcccccccCC
Confidence 9999999999999 7999999999999999
Q ss_pred hhhhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 511 AAQTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 511 ~~~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
++|.++| +.+.++|. +|++|+|+.
T Consensus 369 ~~~~~~~~~~a~~lr~---~la~y~e~~ 393 (502)
T PRK09281 369 AAQIKAMKKVAGTLRL---DLAQYRELE 393 (502)
T ss_pred ccCCHHHHHHHHHHHH---HHHHHHHHH
Confidence 9999999 55666777 899998863
No 8
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=1e-101 Score=831.11 Aligned_cols=348 Identities=36% Similarity=0.532 Sum_probs=320.1
Q ss_pred eeeecCCe----eEEccchhhhhcccccccCC--eEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccccccCCC
Q psy13776 77 REAYPGDV----FYLHSRLLERSAKMSEAHGG--GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGS 150 (539)
Q Consensus 77 ~v~~IGDg----~gL~~~~~~~~gEVV~f~~g--~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~ 150 (539)
++.+|+|+ +|+.++ +.+|++.|+++ ..|+|+++++ |++++++|+++.++++|++|++||++++||||+
T Consensus 4 ~V~~v~~~i~~v~Gl~~~---~~ge~~~~~~~~~~~g~V~~~~~---~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~ 77 (507)
T PRK07165 4 KIKSIFDYIVEVKGEYDY---QQNQFFTLKNNPNVKAFVISATE---DKAYLLINNEKGKIKINDELIELNNTNKVKTSK 77 (507)
T ss_pred EEEEEeceEEEEEcccCC---CcCCEEEECCCCeEEEEEEEEeC---CeEEEEEccCccCCCCCCEEEECCCccEEECCc
Confidence 46777777 677667 89999999766 8999999999 999999999999999999999999999999999
Q ss_pred cccceeE--eeeccCCCCCccc-----chhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCCCch
Q psy13776 151 INCGQLI--IGDRQTGKTALAI-----DTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKT 220 (539)
Q Consensus 151 ~LLGRVv--lG~PiDgk~~i~~-----~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGKT 220 (539)
+|||||+ +|+|+||++++.. +...+ .++++..|.++++||+||||+||+|+|||||||++||||+|||||
T Consensus 78 ~lLGRVvd~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT 157 (507)
T PRK07165 78 EYFGKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKT 157 (507)
T ss_pred cccCCEECCCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCcc
Confidence 9999999 9999999997755 11111 234444444559999999999999999999999999999999999
Q ss_pred HhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHH
Q psy13776 221 ALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIV 300 (539)
Q Consensus 221 tLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~ 300 (539)
+|+++||+||+.. +++|||++||||+|||++|+
T Consensus 158 ~lal~~I~~q~~~-----------------------------------------------dv~~V~~~IGer~~ev~~~~ 190 (507)
T PRK07165 158 HIALNTIINQKNT-----------------------------------------------NVKCIYVAIGQKRENLSRIY 190 (507)
T ss_pred HHHHHHHHHhcCC-----------------------------------------------CeEEEEEEccCChHHHHHHH
Confidence 9999999999753 47899999999999999999
Q ss_pred HHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCc
Q psy13776 301 KRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGD 380 (539)
Q Consensus 301 ~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~ 380 (539)
++++++++|+||++|++|+ |||++||+|||+|||+|||||++ +|||+|||||||||+||||||+++||||+|+|||||
T Consensus 191 ~~l~~~gal~~tvvV~ats-d~~~~r~~ap~~a~tiAEyfrd~-~dVLlv~DdLTr~A~A~REisLllgepPgregYPg~ 268 (507)
T PRK07165 191 ETLKEHDALKNTIIIDAPS-TSPYEQYLAPYVAMAHAENISYN-DDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGD 268 (507)
T ss_pred HHhhhcCceeeeEEEEeCC-CCHHHHHHHHHHHHHHHHHHHhc-CceEEEEcChHHHHHHHHHHHhhccCCCCccCCCch
Confidence 9999999999999999998 59999999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEecc
Q psy13776 381 VFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGN 460 (539)
Q Consensus 381 vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~ 460 (539)
|||.||||+||||+++ |+||||+||+|+|++||++||||||++|||||||||||+||++|
T Consensus 269 vF~~~srLlERAg~~~---g~GSITalpiV~t~~dDis~pIpdnv~sItDGqIvLsr~L~~~G----------------- 328 (507)
T PRK07165 269 MFFAHSKLLERAGKFK---NRKTITALPILQTVDNDITSLISSNIISITDGQIVTSSDLFASG----------------- 328 (507)
T ss_pred HHHHhHHHHHhccCCC---CCCceEEEEEEECCCCCCCCcchhhhccccCeEEEEcHHHHhCC-----------------
Confidence 9999999999999975 47999999999999999999999999999999999999999999
Q ss_pred cccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 461 DRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 461 ~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
+||||||+.|+||+|+++|+++| +.+..+|+ +|+.|+++
T Consensus 329 ----------------------------------~~PAIDvl~SvSRv~~~~q~~~~~~~a~~~r~---~la~Y~e~ 368 (507)
T PRK07165 329 ----------------------------------KLPAIDIDLSVSRTGSSVQSKTITKVAGEISK---IYRAYKRQ 368 (507)
T ss_pred ----------------------------------CCCCcCCccchhhccccccCHHHHHHHHHHHH---HHHHHHHH
Confidence 79999999999999999999999 55666777 88888876
No 9
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.5e-98 Score=781.05 Aligned_cols=350 Identities=27% Similarity=0.369 Sum_probs=323.3
Q ss_pred hhhhcccccccCceeeecCCeeEEccchh-h-hhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEec
Q psy13776 64 YRQMSLLLRRPPGREAYPGDVFYLHSRLL-E-RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETE 141 (539)
Q Consensus 64 ~~ei~g~~~e~~G~v~~IGDg~gL~~~~~-~-~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg 141 (539)
+-++.|+++|+.|+.+++|+.|.+..... . ..+|||+|++ +++.+++|++..|+..|++|.+++
T Consensus 28 v~~v~G~~lea~g~~~~iGelc~i~~~~~~~~~~aEVvgf~~--------------~~~~L~p~~~~~gv~~g~~V~~~~ 93 (441)
T COG1157 28 LTRVTGLLLEAVGPQARIGELCKIERSRGSEKVLAEVVGFNE--------------ERVLLMPFEPVEGVSPGAEVVPTG 93 (441)
T ss_pred EEEEeeeEEEEecCCCcccceEEEEecCCCCceeEEEEEEcC--------------CeEEEeccCccccCCCCCEEEecC
Confidence 46789999999999999999999976432 1 3899999988 569999999999999999999999
Q ss_pred ccccccCCCcccceeE--eeeccCCCCCcccchhc---ccc--ccccccccccccccccceeeeeeeeccccceeeeecc
Q psy13776 142 LFYKVDRGSINCGQLI--IGDRQTGKTALAIDTII---NQK--RKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGD 214 (539)
Q Consensus 142 ~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~---~~~--~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~ 214 (539)
+.+++|+|++|||||+ +|+|+||++.+....+. ..+ |..|.+| ++||.||||+||+|+|||+|||+|||++
T Consensus 94 ~~~~v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I--~~~l~tGVRaIDgllT~G~GQRiGIFAg 171 (441)
T COG1157 94 RPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPI--EEPLDTGVRAIDGLLTCGKGQRIGIFAG 171 (441)
T ss_pred CccccccChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccc--cccccccceeeecccccccCceeEEEec
Confidence 9999999999999999 99999997777654432 223 5556666 9999999999999999999999999999
Q ss_pred CCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchh
Q psy13776 215 RQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRS 294 (539)
Q Consensus 215 ~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ 294 (539)
+|+|||||+ .||+++..+ | +.|+++||||+|
T Consensus 172 sGVGKStLL-gMiar~t~a---------------------D---------------------------v~ViaLIGERGR 202 (441)
T COG1157 172 SGVGKSTLL-GMIARNTEA---------------------D---------------------------VNVIALIGERGR 202 (441)
T ss_pred CCCcHHHHH-HHHhccccC---------------------C---------------------------EEEEEEeeccch
Confidence 999999998 888876544 3 789999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCC
Q psy13776 295 TVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 374 (539)
Q Consensus 295 ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r 374 (539)
||+||+++..+.+.++|||+|+||||+||.+|..++++|++|||||||||||||++|||+||||+|+|||+|+.||||.+
T Consensus 203 EVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~ 282 (441)
T COG1157 203 EVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPAT 282 (441)
T ss_pred hHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcc
Q psy13776 375 EAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVG 454 (539)
Q Consensus 375 ~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~ 454 (539)
+||||+||+.++||+||||+. ++||||+||||++++||++|||+|+++||+||||||||+||++|
T Consensus 283 kGYppSVF~~LP~LlERaG~~----~~GsITafYTVLveGDD~~dPiaD~~RsILDGHIvLsR~LA~~g----------- 347 (441)
T COG1157 283 KGYPPSVFSELPRLLERAGNG----DKGSITAFYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAEAG----------- 347 (441)
T ss_pred CCCCchHHHHhHHHHhhcCCC----CCCcEEEEEEEEeecCCCCCchhhhhhhhccceEEeeHhHHhcC-----------
Confidence 999999999999999999984 47999999999999999999999999999999999999999999
Q ss_pred cEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHh
Q psy13776 455 VVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLL 533 (539)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~ 533 (539)
+||||||+.|+||+|+++.++.| +.+.++|+ ||++|
T Consensus 348 ----------------------------------------hyPaIdvl~SiSRvm~~i~~~~h~~~a~~~r~---lls~y 384 (441)
T COG1157 348 ----------------------------------------HYPAIDVLASISRVMPQIVSEEHRKAARRLRQ---LLSRY 384 (441)
T ss_pred ----------------------------------------CCCCcchHHHHHHHhhhcCCHHHHHHHHHHHH---HHHHH
Confidence 69999999999999999999999 88999999 77777
Q ss_pred hhh
Q psy13776 534 KQL 536 (539)
Q Consensus 534 ~~~ 536 (539)
++.
T Consensus 385 ~e~ 387 (441)
T COG1157 385 EEN 387 (441)
T ss_pred HHH
Confidence 764
No 10
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=1.2e-95 Score=781.87 Aligned_cols=358 Identities=22% Similarity=0.305 Sum_probs=311.8
Q ss_pred hcccccccCce-eeecCCeeEEccchhh-hhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCE-EEEeccc
Q psy13776 67 MSLLLRRPPGR-EAYPGDVFYLHSRLLE-RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQI-FLETELF 143 (539)
Q Consensus 67 i~g~~~e~~G~-v~~IGDg~gL~~~~~~-~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~-V~~tg~~ 143 (539)
+++.++++.|. .+.+||.|.+.+.... ..+||++|+ + |++.+++|+++.|++.|+. |++|+++
T Consensus 8 i~g~iv~v~g~~~~~~ge~~~i~~~~~~~~~geVv~~~-----------~---~~~~l~~~~~t~gi~~g~~~V~~tg~~ 73 (458)
T TIGR01041 8 IAGPLVFVEGVEPVAYNEIVEIETPDGEKRRGQVLDSS-----------E---GLAVVQVFEGTTGLDPTGTKVRFTGET 73 (458)
T ss_pred EEccEEEEEccCCCCcCCEEEEEcCCCcEEEEEEEEEE-----------C---CEEEEEEecCCcCcCCCCcEEEECCCc
Confidence 56667777777 7778888777321111 345555554 4 7899999999999999986 9999999
Q ss_pred ccccCCCcccceeE--eeeccCCCCCcccchhc---cccccccccccccccccccceeeeeeeeccccceeeeeccCCCC
Q psy13776 144 YKVDRGSINCGQLI--IGDRQTGKTALAIDTII---NQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTG 218 (539)
Q Consensus 144 ~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~---~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtG 218 (539)
++||||++|||||+ +|+|+|+++++..+... ..++++..|..+++||+||||+||+|+|||||||++|||++|+|
T Consensus 74 ~~v~vg~~lLGRViD~~G~plD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~G 153 (458)
T TIGR01041 74 LKLPVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLP 153 (458)
T ss_pred eEEEcChhhccCEEccCCcccCCCCCCCccceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCC
Confidence 99999999999999 99999999877554322 22344444555599999999999999999999999999999999
Q ss_pred chHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHH
Q psy13776 219 KTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQ 298 (539)
Q Consensus 219 KTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e 298 (539)
||+|+ .+|++|+.. |. .+++++|||++||||++||++
T Consensus 154 Ks~L~-~~ia~~~~a---------------------d~---------------------~~~~~v~V~~~iGERgrEv~e 190 (458)
T TIGR01041 154 HNELA-AQIARQATV---------------------RG---------------------EESEFAVVFAAMGITYEEANF 190 (458)
T ss_pred HHHHH-HHHHHhhcc---------------------cC---------------------CCCceEEEEEEccccchHHHH
Confidence 99998 568888764 10 123579999999999999999
Q ss_pred HHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHH-HCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCC
Q psy13776 299 IVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 377 (539)
Q Consensus 299 ~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFr-d~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gy 377 (539)
|++++++.++|+|||+|+||||+||.+|+++||+|||+||||| |||+|||+++||+||||+|+||||+++||||+++||
T Consensus 191 fi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~GY 270 (458)
T TIGR01041 191 FMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGY 270 (458)
T ss_pred HHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHHHhcCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999 799999999999999999999999999999999999
Q ss_pred CCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEE
Q psy13776 378 PGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVV 457 (539)
Q Consensus 378 Pg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~ 457 (539)
|||+|+.||+|+||||+++. .+||||+||+|++|+||++||||||++|||||||||||+||++|
T Consensus 271 P~svfs~l~~LlERaG~~~~--~~GSITai~tV~~~gdD~~dPI~d~~~sIlDGhivLsr~La~~G-------------- 334 (458)
T TIGR01041 271 PGYMYTDLATIYERAGRVKG--KKGSITQMPILTMPGDDITHPIPDLTGYITEGQIVLSRELHRKG-------------- 334 (458)
T ss_pred CccHHHHhHHHHHhcccCCC--CCcceEEEEEEEcCCCCCCCchHHhhhhhcceEEEEcHHHHhCC--------------
Confidence 99999999999999999763 38999999999999999999999999999999999999999999
Q ss_pred ecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCch-----hhhHHHHHhhhhhhHHHHHHH
Q psy13776 458 FGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSA-----AQTRAMKQTGKIRSWNGWLSL 532 (539)
Q Consensus 458 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~-----~~~~~~~~~~~~r~~~~~~~~ 532 (539)
+|||||++.|+||+++. ++.+.|+++++ +++..++.
T Consensus 335 -------------------------------------~yPAIDvl~SvSR~~~~~ig~~~~~~~~~~~a~--~l~~~y~~ 375 (458)
T TIGR01041 335 -------------------------------------IYPPINVLPSLSRLMKDGIGEGKTREDHKDVSD--QLYAAYAE 375 (458)
T ss_pred -------------------------------------CCCccCCccchhhcccccccccccCHHHHHHHH--HHHHHHHH
Confidence 69999999999999876 89999977666 55556666
Q ss_pred hhhh
Q psy13776 533 LKQL 536 (539)
Q Consensus 533 ~~~~ 536 (539)
+++|
T Consensus 376 ~~~L 379 (458)
T TIGR01041 376 GRDL 379 (458)
T ss_pred HHHH
Confidence 6655
No 11
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=7.1e-95 Score=777.24 Aligned_cols=342 Identities=23% Similarity=0.326 Sum_probs=299.9
Q ss_pred hhccccccc--CC--eEEEEEeccccCCCcEEEEcccCCcCCC-CCCEEEEecccccccCCCcccceeE--eeeccCCCC
Q psy13776 94 RSAKMSEAH--GG--GSLTALPVIETQAGDVSAYIPTNVISIT-DGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKT 166 (539)
Q Consensus 94 ~~gEVV~f~--~g--~~G~vl~l~~~~~d~v~l~~~g~~~gi~-~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~ 166 (539)
..+|++.|+ ++ ..|+|+++++ |.+.+++|+++.|++ .|++|.+|+++++||+|++|||||+ +|+|+||++
T Consensus 24 ~~ge~~~i~~~~~~~~~geVi~~~~---~~~~l~~~~~t~gl~i~G~~V~~tg~~~~V~vg~~lLGRVvD~~G~PlD~~~ 100 (460)
T PRK04196 24 AYGEIVEIELPNGEKRRGQVLEVSE---DKAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPIDGGP 100 (460)
T ss_pred CCCCEEEEEcCCCCEEEEEEEEEeC---CeEEEEEccCCCCCCCCCCEEEeCCCccEEEcCcccccCEECccCCCccCCC
Confidence 455555553 22 3567777777 899999999999999 8999999999999999999999999 999999998
Q ss_pred Ccccchhc---cccccccccccccccccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhcccccccccc
Q psy13776 167 ALAIDTII---NQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAP 243 (539)
Q Consensus 167 ~i~~~~~~---~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~ 243 (539)
++...... ..++++..|..+++||+||||+||+|+|||||||++|||++|+|||+|+ .+|++|+..
T Consensus 101 ~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~-~~ia~~~~~---------- 169 (460)
T PRK04196 101 EIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNELA-AQIARQAKV---------- 169 (460)
T ss_pred CCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCccHHH-HHHHHhhhh----------
Confidence 87544322 1223333344449999999999999999999999999999999999998 568888754
Q ss_pred ccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCCh
Q psy13776 244 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAA 323 (539)
Q Consensus 244 ~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a 323 (539)
|+ .+++++|||++||||+|||+||++++++.++|+||++|+||||+||
T Consensus 170 -----------d~---------------------~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~ 217 (460)
T PRK04196 170 -----------LG---------------------EEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPA 217 (460)
T ss_pred -----------cc---------------------CCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCH
Confidence 20 1235899999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHH-HCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCc
Q psy13776 324 PLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGG 402 (539)
Q Consensus 324 ~~r~~ap~~a~tiAEyFr-d~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~G 402 (539)
.+|+++||+||||||||| |||+|||++|||+||||+||||||+++||||+++|||||+|+.||+|+||||+++. .+|
T Consensus 218 ~~R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~~--~~G 295 (460)
T PRK04196 218 IERILTPRMALTAAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIKG--KKG 295 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCCC--CCe
Confidence 999999999999999999 79999999999999999999999999999999999999999999999999999763 389
Q ss_pred cceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccc
Q psy13776 403 SLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVG 482 (539)
Q Consensus 403 SITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 482 (539)
|||+||+|++++||++||||||++|||||||||||+||++|
T Consensus 296 SITai~~V~~~gdD~~dpI~d~~~sI~DG~ivLsr~La~~g--------------------------------------- 336 (460)
T PRK04196 296 SITQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKG--------------------------------------- 336 (460)
T ss_pred eeEEEEEEEcCCCCCCCchhhhhhhhcceEEEEcHHHHhCC---------------------------------------
Confidence 99999999999999999999999999999999999999999
Q ss_pred cccchhhccccCCCccccccccccccCchh-----hhHHHHHhhhhhhHHHHHHHhhhh
Q psy13776 483 EDLLGRVVDALGIRPAINVGLSVSRVGSAA-----QTRAMKQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 483 ~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~-----~~~~~~~~~~~r~~~~~~~~~~~~ 536 (539)
+|||||+++|+||+++.+ |.+.|++++.- +...|+.|++|
T Consensus 337 ------------~~PAIDvl~SvSR~~~~~~~~~~~~~~~~~~a~~--l~~~y~~~~~l 381 (460)
T PRK04196 337 ------------IYPPIDVLPSLSRLMKDGIGEGKTREDHKDVANQ--LYAAYARGKDL 381 (460)
T ss_pred ------------CCCccCCccchhhhccccCCcccCcHHHHHHHHH--HHHHHHHHHHH
Confidence 699999999999997654 44888554443 44577777765
No 12
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=3.8e-93 Score=763.80 Aligned_cols=354 Identities=20% Similarity=0.241 Sum_probs=314.8
Q ss_pred hhcccccccCceeeec---CCeeEEccch--h---hhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEE
Q psy13776 66 QMSLLLRRPPGREAYP---GDVFYLHSRL--L---ERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIF 137 (539)
Q Consensus 66 ei~g~~~e~~G~v~~I---GDg~gL~~~~--~---~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V 137 (539)
++.|+++++.|+.+.+ |+.|.+.... . ...+||++|.+. +.+.+++|+++.|++.|++|
T Consensus 21 ~v~G~viev~~~~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~-------------~~v~~~~l~~~~gi~~G~~V 87 (494)
T CHL00060 21 QIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGN-------------NRVRAVAMSATDGLMRGMEV 87 (494)
T ss_pred EEEccEEEEEecCCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCC-------------CeEEEEeccCccCCCCCCEE
Confidence 4577888999988888 9999994322 1 267899999872 55999999999999999999
Q ss_pred EEecccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeee
Q psy13776 138 LETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELII 212 (539)
Q Consensus 138 ~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~ 212 (539)
.+|+++++||||++|||||+ +|+|+||++++...+..+ .++++..|..+++||+||||+||+|+|||||||++||
T Consensus 88 ~~tg~~~~vpvg~~lLGRVid~~G~piDg~~~~~~~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gIf 167 (494)
T CHL00060 88 IDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLF 167 (494)
T ss_pred EeCCCcceeecchhhcCCEEeecCcccCCCCCCCCCccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEeee
Confidence 99999999999999999999 999999998775433212 2233333333499999999999999999999999999
Q ss_pred ccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccc
Q psy13776 213 GDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQK 292 (539)
Q Consensus 213 g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer 292 (539)
|++|+|||+|+.+++.||+.. ++++|||++||||
T Consensus 168 gg~GvGKs~L~~~~~~~~~~~----------------------------------------------~~dv~V~~lIGER 201 (494)
T CHL00060 168 GGAGVGKTVLIMELINNIAKA----------------------------------------------HGGVSVFGGVGER 201 (494)
T ss_pred cCCCCChhHHHHHHHHHHHHh----------------------------------------------cCCeEEEEEeccC
Confidence 999999999998888776643 1247999999999
Q ss_pred hhHHHHHHHHHhcCCC-------CceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCC-cEEEEecChhHHHHHhHHh
Q psy13776 293 RSTVAQIVKRLTDSGA-------MGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGK-HALIIYDDLSKQAVAYRQM 364 (539)
Q Consensus 293 ~~ev~e~~~~l~~~~~-------~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~Gk-dVLli~DslTr~A~A~Rei 364 (539)
+|||+||++++++.++ ++||++|++|+|+||.+|+++||+|+|+||||||+|+ |||++|||+||||+|+|||
T Consensus 202 grEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A~A~REI 281 (494)
T CHL00060 202 TREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEV 281 (494)
T ss_pred chHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHHHHHHHH
Confidence 9999999999999555 4588999999999999999999999999999999986 9999999999999999999
Q ss_pred hhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccC
Q psy13776 365 SLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGM 444 (539)
Q Consensus 365 sl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~ 444 (539)
|+++||||+++|||||+|+.||+|+||||+.+ +||||+||+|++++||++|||||+++|||||||||||+||++|
T Consensus 282 sl~~gepP~~~GYPpsvfs~l~~LlERaG~~~----~GSITai~tVl~~gdD~tdPI~d~~~silDGhIvLsr~La~~G- 356 (494)
T CHL00060 282 SALLGRMPSAVGYQPTLSTEMGSLQERITSTK----EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKG- 356 (494)
T ss_pred HHhcCCCCCCCCcCCCHHHHhHHHHHhccCCC----CCCeeEEEEEECCCCCCCCcchHhhhhhcceEEEEcHHHHhCC-
Confidence 99999999999999999999999999999853 6999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccccccccccc-CchhhhHHH-HHhhh
Q psy13776 445 ALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRV-GSAAQTRAM-KQTGK 522 (539)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~-~~~~~~~~~-~~~~~ 522 (539)
+|||||++.|+||+ ++....++| +.+.+
T Consensus 357 --------------------------------------------------~yPAIDvl~SvSR~~~~~~v~~~h~~~a~~ 386 (494)
T CHL00060 357 --------------------------------------------------IYPAVDPLDSTSTMLQPRIVGEEHYETAQR 386 (494)
T ss_pred --------------------------------------------------CCCCcCCccchhhhcccccCCHHHHHHHHH
Confidence 79999999999998 888888888 77888
Q ss_pred hhhHHHHHHHhhhh
Q psy13776 523 IRSWNGWLSLLKQL 536 (539)
Q Consensus 523 ~r~~~~~~~~~~~~ 536 (539)
+|+ +|++|+|+
T Consensus 387 ~r~---~la~y~e~ 397 (494)
T CHL00060 387 VKQ---TLQRYKEL 397 (494)
T ss_pred HHH---HHHHhHHH
Confidence 888 88888875
No 13
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=5.9e-93 Score=757.80 Aligned_cols=353 Identities=20% Similarity=0.275 Sum_probs=316.0
Q ss_pred hhcccccccCceeeecCCee---EEccchh-hhhccccc-ccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEe
Q psy13776 66 QMSLLLRRPPGREAYPGDVF---YLHSRLL-ERSAKMSE-AHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLET 140 (539)
Q Consensus 66 ei~g~~~e~~G~v~~IGDg~---gL~~~~~-~~~gEVV~-f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~t 140 (539)
++.|+++++.|+.+.+|+.| .+..... ...+|||+ |++ +.+.+++|+++.|++.|+.|.+|
T Consensus 7 ~v~g~~ie~~~~~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~--------------~~v~l~~l~~~~gi~~G~~V~~t 72 (461)
T TIGR01039 7 QVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGD--------------DTVRTIAMGSTDGLVRGLEVIDT 72 (461)
T ss_pred EEEeeEEEEEECCCCCcchheEEEEecCCCceEEEEeeeeeCC--------------CeEEEEEccCcccCCCCCEEEeC
Confidence 46788899999999999999 7732122 26678888 776 66999999999999999999999
Q ss_pred cccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccC
Q psy13776 141 ELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDR 215 (539)
Q Consensus 141 g~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~ 215 (539)
+++++||+|++|||||+ +|+|+||++++.....++ .+|++..|..+++||+||||+||+|+|||||||++|||++
T Consensus 73 ~~~~~i~vg~~lLGRViD~~G~pid~~~~~~~~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~ 152 (461)
T TIGR01039 73 GAPISVPVGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGA 152 (461)
T ss_pred CCceEEEcChhhcCCEEccCCcccCCCCCCCCCcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCC
Confidence 99999999999999999 999999998775443222 2333444444499999999999999999999999999999
Q ss_pred CCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhH
Q psy13776 216 QTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRST 295 (539)
Q Consensus 216 gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~e 295 (539)
|+|||+|+.+++.|+... .+.+|||++||||+||
T Consensus 153 G~GKt~L~~~~~~~~~~~----------------------------------------------~~~v~V~alIGER~rE 186 (461)
T TIGR01039 153 GVGKTVLIQELINNIAKE----------------------------------------------HGGYSVFAGVGERTRE 186 (461)
T ss_pred CCChHHHHHHHHHHHHhc----------------------------------------------CCCeEEEEEecCCchH
Confidence 999999996655555421 1247999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHH-CCCcEEEEecChhHHHHHhHHhhhccCCCCCC
Q psy13776 296 VAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 374 (539)
Q Consensus 296 v~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd-~GkdVLli~DslTr~A~A~Reisl~lgepP~r 374 (539)
|+||++++++.++|+||++|+||||+||.+|+++||+|+|+|||||| +|+|||+++||+||||+|+||||+++||||++
T Consensus 187 v~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~ 266 (461)
T TIGR01039 187 GNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSA 266 (461)
T ss_pred HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcc
Q psy13776 375 EAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVG 454 (539)
Q Consensus 375 ~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~ 454 (539)
+||||++|+.||+|+||||+. ++||||+||+|++++||++|||||+++||+||||+|||+||++|
T Consensus 267 ~GYPpsvfs~l~~L~ERag~~----~~GSITai~tVl~~gdD~~dPi~d~~~silDGhIvLsr~La~~g----------- 331 (461)
T TIGR01039 267 VGYQPTLATEMGELQERITST----KTGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELG----------- 331 (461)
T ss_pred CCcCCcHHHHHHHHHHhcCCC----CCCceeEEEEEEccCCCCCCccHHHHHHhcceEEEECHHHHhCC-----------
Confidence 999999999999999999973 48999999999999999999999999999999999999999999
Q ss_pred cEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccC-chhhhHHH-HHhhhhhhHHHHHHH
Q psy13776 455 VVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVG-SAAQTRAM-KQTGKIRSWNGWLSL 532 (539)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~-~~~~~~~~-~~~~~~r~~~~~~~~ 532 (539)
+|||||++.|+||+| +..+.+.| +.+.++|+ +|++
T Consensus 332 ----------------------------------------~yPAIDvl~S~SR~~~~~~~~~~h~~~a~~~r~---~la~ 368 (461)
T TIGR01039 332 ----------------------------------------IYPAVDPLDSTSRLLDPSVVGEEHYDVARGVQQ---ILQR 368 (461)
T ss_pred ----------------------------------------CCCCcCCccccccccCCccCCHHHHHHHHHHHH---HHHh
Confidence 799999999999999 77788888 66778888 8888
Q ss_pred hhhh
Q psy13776 533 LKQL 536 (539)
Q Consensus 533 ~~~~ 536 (539)
|+|+
T Consensus 369 y~e~ 372 (461)
T TIGR01039 369 YKEL 372 (461)
T ss_pred hhHH
Confidence 8876
No 14
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=8.5e-93 Score=755.00 Aligned_cols=354 Identities=21% Similarity=0.289 Sum_probs=303.4
Q ss_pred hhcccccccCce-eeecCCeeEEccchhh-hhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCC-CCEEEEecc
Q psy13776 66 QMSLLLRRPPGR-EAYPGDVFYLHSRLLE-RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD-GQIFLETEL 142 (539)
Q Consensus 66 ei~g~~~e~~G~-v~~IGDg~gL~~~~~~-~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~-G~~V~~tg~ 142 (539)
++.|.++++.|+ .+.+||.|.+....+. ..+||++|++ +.+.+++|+++.|++. |++|++|++
T Consensus 7 ~i~G~~i~~~g~~~~~~Ge~~~i~~~~~~~~~geVi~~~~--------------~~~~l~~~~~~~gi~~~g~~V~~t~~ 72 (466)
T TIGR01040 7 GVNGPLVILDNVKFPRFAEIVNLTLPDGTVRSGQVLEVSG--------------NKAVVQVFEGTSGIDAKKTTCEFTGD 72 (466)
T ss_pred EEEccEEEEECCCCCCcCCEEEEEeCCCCEEEEEEEEEeC--------------CeEEEEEcCCCCCcccCCCEEEECCC
Confidence 467888899998 9999999999421222 3566666655 7799999999999997 999999999
Q ss_pred cccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCC
Q psy13776 143 FYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQT 217 (539)
Q Consensus 143 ~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gt 217 (539)
+++||||++|||||+ +|+|+||++++..+...+ .++++..|..+++||+||||+||+|+|||||||++|||++|+
T Consensus 73 ~~~v~vg~~lLGRVid~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGv 152 (466)
T TIGR01040 73 ILRTPVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 152 (466)
T ss_pred ccEEEcCcccccCEECccccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCC
Confidence 999999999999999 999999998875443222 234444444459999999999999999999999999999999
Q ss_pred CchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHH
Q psy13776 218 GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVA 297 (539)
Q Consensus 218 GKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~ 297 (539)
|||+|+ .+|++|+..... ..+ | + ...++++++|||++|||| +|+.
T Consensus 153 GKs~L~-~~i~~~~~~~~~--------~~a-------D-----------~-------~~~~~~~~v~V~a~IGer-re~~ 197 (466)
T TIGR01040 153 PHNEIA-AQICRQAGLVKL--------PTK-------D-----------V-------HDGHEDNFAIVFAAMGVN-META 197 (466)
T ss_pred CHHHHH-HHHHHhhccccc--------ccc-------c-----------c-------ccccCCceEEEEEEeeee-hHHH
Confidence 999998 679988752000 000 1 0 011234689999999999 6666
Q ss_pred HH-HHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHH-HCCCcEEEEecChhHHHHHhHHhhhccCCCCCCC
Q psy13776 298 QI-VKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGRE 375 (539)
Q Consensus 298 e~-~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFr-d~GkdVLli~DslTr~A~A~Reisl~lgepP~r~ 375 (539)
+| .+.|.++++|+||++|++|||+||.+|+++||+|||+||||| ++|+|||+++|||||||+|+||||+++||||+++
T Consensus 198 efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REisl~~gepP~~~ 277 (466)
T TIGR01040 198 RFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRR 277 (466)
T ss_pred HHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHHHhcCCCCCCc
Confidence 64 555777888999999999999999999999999999999999 6999999999999999999999999999999999
Q ss_pred CCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCccc
Q psy13776 376 AYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGV 455 (539)
Q Consensus 376 gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~ 455 (539)
|||||||+.||+|+||||+++. ++||||+||+|++++||++|||||+++|||||||||||+||++|
T Consensus 278 GYP~svfs~l~~L~ERaG~~~~--~~GSITai~tV~~~~dD~~~pI~d~~~sIlDGhIvLsr~La~~g------------ 343 (466)
T TIGR01040 278 GFPGYMYTDLATIYERAGRVEG--RNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQ------------ 343 (466)
T ss_pred CcCchHHHHHHHHhhccccCCC--CCcceEEEEEEECCCCCCCCcchhhhhhhcceEEEECHHHHhCC------------
Confidence 9999999999999999999753 47999999999999999999999999999999999999999999
Q ss_pred EEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhh-----HHHHHhh
Q psy13776 456 VVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQT-----RAMKQTG 521 (539)
Q Consensus 456 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~-----~~~~~~~ 521 (539)
+||||||+.|+||+|+.+++ +.|.+.+
T Consensus 344 ---------------------------------------~yPAIDvl~SvSRl~~~v~~~~~~~~~h~~~a 375 (466)
T TIGR01040 344 ---------------------------------------IYPPINVLPSLSRLMKSAIGEGMTRKDHSDVS 375 (466)
T ss_pred ---------------------------------------CCCccCCccchhhccccccccCcCcHHHHHHH
Confidence 79999999999999999988 5664443
No 15
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=1.2e-92 Score=757.08 Aligned_cols=353 Identities=20% Similarity=0.259 Sum_probs=315.6
Q ss_pred hhcccccccCceee---ecCCeeEEc-cchhhhhccccc-ccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEe
Q psy13776 66 QMSLLLRRPPGREA---YPGDVFYLH-SRLLERSAKMSE-AHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLET 140 (539)
Q Consensus 66 ei~g~~~e~~G~v~---~IGDg~gL~-~~~~~~~gEVV~-f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~t 140 (539)
++.|.++++.|+.+ .+||.|.+. .......+|||+ |++ +.+.+++|+++.|++.|+.|.+|
T Consensus 8 ~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~--------------~~~~~~~~~~~~gi~~G~~V~~t 73 (463)
T PRK09280 8 QVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGD--------------GVVRTIAMGSTDGLVRGMEVIDT 73 (463)
T ss_pred EEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecC--------------CeEEEEEecCccCCCCCCEEEeC
Confidence 46778888888877 999999993 112236778888 776 56999999999999999999999
Q ss_pred cccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccC
Q psy13776 141 ELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDR 215 (539)
Q Consensus 141 g~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~ 215 (539)
+++++||+|++|||||+ +|+|||+++++.....++ .++++..|..+++||.||||+||+|+|||||||++|||++
T Consensus 74 g~~~~v~vg~~lLGRViD~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~ 153 (463)
T PRK09280 74 GAPISVPVGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGA 153 (463)
T ss_pred CCceEEEcChhhcCCEEeeeccccCCCCCcCccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCC
Confidence 99999999999999999 999999998775444322 2344444444599999999999999999999999999999
Q ss_pred CCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhH
Q psy13776 216 QTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRST 295 (539)
Q Consensus 216 gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~e 295 (539)
|+|||+|+.+++.|++.. ...+|||++||||++|
T Consensus 154 GvGKt~Ll~~i~~~~~~~----------------------------------------------~~~v~V~~liGER~rE 187 (463)
T PRK09280 154 GVGKTVLIQELINNIAKE----------------------------------------------HGGYSVFAGVGERTRE 187 (463)
T ss_pred CCChhHHHHHHHHHHHhc----------------------------------------------CCCEEEEEEeccCcHH
Confidence 999999996655555431 1247999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHH-CCCcEEEEecChhHHHHHhHHhhhccCCCCCC
Q psy13776 296 VAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 374 (539)
Q Consensus 296 v~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd-~GkdVLli~DslTr~A~A~Reisl~lgepP~r 374 (539)
|+||++++.+.++|+||++|+||||+||.+|+++||+|+|+|||||| ||+|||+++||+||||+|+||||+++||||++
T Consensus 188 v~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~ 267 (463)
T PRK09280 188 GNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSA 267 (463)
T ss_pred HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcc
Q psy13776 375 EAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVG 454 (539)
Q Consensus 375 ~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~ 454 (539)
+||||++|+.||+|+||||+. ++||||+||+|++++||++|||||+++||+||||+|||+||++|
T Consensus 268 ~GYPpsvfs~l~~L~ERag~~----~~GSITai~tVl~~gdD~~dPI~d~~~silDGhIvLsr~La~~g----------- 332 (463)
T PRK09280 268 VGYQPTLATEMGQLQERITST----KKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELG----------- 332 (463)
T ss_pred cCcCchHHHHHHHHHHHhcCC----CCCceeEEEEEECcCCCCCCcchHhhhhhcceEEEEcHHHHhCC-----------
Confidence 999999999999999999973 48999999999999999999999999999999999999999999
Q ss_pred cEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccC-chhhhHHH-HHhhhhhhHHHHHHH
Q psy13776 455 VVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVG-SAAQTRAM-KQTGKIRSWNGWLSL 532 (539)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~-~~~~~~~~-~~~~~~r~~~~~~~~ 532 (539)
+|||||++.|+||+| +..+++.| +.+.++|+ +|++
T Consensus 333 ----------------------------------------~yPAIDvl~S~SR~~~~~~~~~~~~~~a~~~r~---~la~ 369 (463)
T PRK09280 333 ----------------------------------------IYPAVDPLDSTSRILDPLIVGEEHYDVAREVQQ---ILQR 369 (463)
T ss_pred ----------------------------------------CCCccCCccccccccccccCCHHHHHHHHHHHH---HHHH
Confidence 699999999999999 45677899 77888888 8888
Q ss_pred hhhh
Q psy13776 533 LKQL 536 (539)
Q Consensus 533 ~~~~ 536 (539)
|+++
T Consensus 370 y~e~ 373 (463)
T PRK09280 370 YKEL 373 (463)
T ss_pred hHHH
Confidence 8875
No 16
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.7e-92 Score=751.46 Aligned_cols=370 Identities=21% Similarity=0.292 Sum_probs=326.7
Q ss_pred HHHHHHhcCcchh-hhhhhhcccccccCceeeecCCeeEEccchhhhhcccccccCCeEEEEEeccccCCCcEEEEcccC
Q psy13776 49 ILEERILGSAPKA-VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTN 127 (539)
Q Consensus 49 ~l~~~i~~~~~~~-~~~~ei~g~~~e~~G~v~~IGDg~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~ 127 (539)
.+|+++..+.... --..++.|+++++.|+.+.+||.|.+........+|||+|++ +.+.+++|++
T Consensus 13 ~~~~~~~~~~~~~~G~v~~v~g~~i~~~g~~~~ige~~~i~~~~~~~~~EVv~~~~--------------~~~~l~~~~~ 78 (444)
T PRK08972 13 QYKVKVPPFRAVASGKLVRVVGLTLEATGCRAPVGSLCSIETMAGELEAEVVGFDG--------------DLLYLMPIEE 78 (444)
T ss_pred HHhhccCCCCcceeeEEEEEEcCEEEEeeCCCCCCCEEEEecCCCcEEEEEEEecC--------------CEEEEEECCC
Confidence 3566776554332 123568899999999999999999994322347889999987 6699999999
Q ss_pred CcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhc---cccccccccccccccccccceeeeeeee
Q psy13776 128 VISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTII---NQKRKKRRRLLKYNLLSAGIKAVDSLVP 202 (539)
Q Consensus 128 ~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~---~~~~~~r~ri~~~epl~TGIraID~l~p 202 (539)
+.|++.|++|++|+++++||+|++|||||+ +|+|+||++++..++.. ..++++..|..+++||+||+++||.++|
T Consensus 79 ~~gi~~g~~V~~tg~~~~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~ 158 (444)
T PRK08972 79 LRGVLPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLT 158 (444)
T ss_pred cCCCCCCCEEEECCCccEEEcChhhcCCeECCCCCCcCCCCCCCCCccccccCCCCChhhcCCCCCcccccceeecceEE
Confidence 999999999999999999999999999999 99999999887544322 2233344444459999999999999999
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCce
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKL 282 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~ 282 (539)
|++|||++|||++|+|||||+ .+|+++... .
T Consensus 159 i~~GqrigI~G~sG~GKSTLL-~~I~~~~~~------------------------------------------------d 189 (444)
T PRK08972 159 VGKGQRMGLFAGSGVGKSVLL-GMMTRGTTA------------------------------------------------D 189 (444)
T ss_pred EcCCCEEEEECCCCCChhHHH-HHhccCCCC------------------------------------------------C
Confidence 999999999999999999997 666643221 2
Q ss_pred EEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhH
Q psy13776 283 YCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYR 362 (539)
Q Consensus 283 ~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~R 362 (539)
++|+++||||++||+||++++.+.+.|+|||+|++|+|+||.+|+++||+|+|+||||||+|+|||++||||||||+|+|
T Consensus 190 v~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~R 269 (444)
T PRK08972 190 VIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQR 269 (444)
T ss_pred EEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHH
Confidence 56669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhc
Q psy13776 363 QMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYK 442 (539)
Q Consensus 363 eisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~ 442 (539)
|||+++||||+++||||++|+.||+|+||||+... ++||||+||+|++++||++|||||+++||+||||||||+||++
T Consensus 270 EIsl~~gepP~~~GYPpsvfs~l~~L~ERAg~~~~--~~GSITai~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~ 347 (444)
T PRK08972 270 EIALAVGEPPATKGYPPSVFAKLPALVERAGNGGP--GQGSITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRELADS 347 (444)
T ss_pred HHHHhcCCCCccccCCchHHHHhHHHHHHhcCCCC--CCceeeeEEEEEEeCCCCCcchHHhhhhhcceEEEEcHHHHhC
Confidence 99999999999999999999999999999998642 5799999999999999999999999999999999999999999
Q ss_pred cCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhh
Q psy13776 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTG 521 (539)
Q Consensus 443 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~ 521 (539)
| +|||||++.|+||+|+.++++.| +.+.
T Consensus 348 g---------------------------------------------------~yPAIDvl~S~SR~~~~i~~~~h~~~a~ 376 (444)
T PRK08972 348 G---------------------------------------------------HYPAIDIEASISRVMPMVISEEHLEAMR 376 (444)
T ss_pred C---------------------------------------------------CCCeeCCccccccCchhcCcHHHHHHHH
Confidence 9 79999999999999999999999 6677
Q ss_pred hhhhHHHHHHHhhhhh
Q psy13776 522 KIRSWNGWLSLLKQLY 537 (539)
Q Consensus 522 ~~r~~~~~~~~~~~~~ 537 (539)
++|+ +|+.|+++.
T Consensus 377 ~~r~---~ls~y~~~e 389 (444)
T PRK08972 377 RVKQ---VYSLYQQNR 389 (444)
T ss_pred HHHH---HHHHHHHHH
Confidence 8888 777777753
No 17
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=2.7e-92 Score=750.96 Aligned_cols=375 Identities=23% Similarity=0.313 Sum_probs=330.5
Q ss_pred ChHHHHHHHHHHHhcCcchhh--hhhhhcccccccCceeeecCCeeEEccc-hh-hhhcccccccCCeEEEEEeccccCC
Q psy13776 42 RAAEISSILEERILGSAPKAV--AYRQMSLLLRRPPGREAYPGDVFYLHSR-LL-ERSAKMSEAHGGGSLTALPVIETQA 117 (539)
Q Consensus 42 ~~~ei~~~l~~~i~~~~~~~~--~~~ei~g~~~e~~G~v~~IGDg~gL~~~-~~-~~~gEVV~f~~g~~G~vl~l~~~~~ 117 (539)
..+++.+.+.+++........ ...++.+.+.++.|+.+.+||.|.+... .. ...+|||+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~~v~~~~~~~~~ge~~~i~~~~~~~~~~~eVv~~~~-------------- 68 (439)
T PRK06936 3 SLDYIPHHLRHAIVGSRLIQIRGRVTQVTGTILKAVVPGVRIGELCYLRNPDNSLSLQAEVIGFAQ-------------- 68 (439)
T ss_pred cHHHHHHHHHHHHhcCCccceeeEEEEEECcEEEEEeCCCCCCCEEEEecCCCCcceEEEEEEEEC--------------
Confidence 467888888888876544211 1245677777888888888888888532 11 26677777776
Q ss_pred CcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccc
Q psy13776 118 GDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSA 192 (539)
Q Consensus 118 d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~T 192 (539)
+++.+++|+++.|++.|++|++|+++++||+|++|||||+ +|+|+||++++......+ .+|++..|..+++||+|
T Consensus 69 ~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~lLGRV~d~~G~plD~~~~~~~~~~~pi~~~~p~p~~R~~i~~~l~T 148 (439)
T PRK06936 69 HQALLTPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSL 148 (439)
T ss_pred CeEEEEecCCCCCCCCCCEEEeCCCceEEEeCccccCCEECCCCCccCCCCCCCccceeeccCCCCChHHccccCCCCcC
Confidence 6699999999999999999999999999999999999999 999999998775443322 23444444445999999
Q ss_pred cceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHH
Q psy13776 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 272 (539)
Q Consensus 193 GIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~ 272 (539)
||++||.++||++|||++|||++|+|||||+ .+|+++...
T Consensus 149 Gi~vid~l~~i~~Gq~~~I~G~sG~GKStLl-~~Ia~~~~~--------------------------------------- 188 (439)
T PRK06936 149 GVRVIDGLLTCGEGQRMGIFAAAGGGKSTLL-ASLIRSAEV--------------------------------------- 188 (439)
T ss_pred CcceeeeeEEecCCCEEEEECCCCCChHHHH-HHHhcCCCC---------------------------------------
Confidence 9999999999999999999999999999996 788876542
Q ss_pred HhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEec
Q psy13776 273 AYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYD 352 (539)
Q Consensus 273 ~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~D 352 (539)
.+|||++||||+|||+||+++..+.+.|+||++|++|||+||.+|+++||+|+|+||||||||||||+++|
T Consensus 189 ---------dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~Vll~~D 259 (439)
T PRK06936 189 ---------DVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMD 259 (439)
T ss_pred ---------CEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecc
Confidence 26999999999999999998877778899999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCcccccccccccee
Q psy13776 353 DLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432 (539)
Q Consensus 353 slTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGq 432 (539)
|+||||+|+||||+++||||+++||||++|+.||+|+||||+. ++||||+||+|++|+||++|||||+++||+|||
T Consensus 260 slTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~~----~~GSIT~i~tVl~~gdD~~dpI~d~~~silDGh 335 (439)
T PRK06936 260 SVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQS----DKGSITALYTVLVEGDDMTEPVADETRSILDGH 335 (439)
T ss_pred chhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC----CCcceeeeEEEEccCCCCCcchHHHhhhhcceE
Confidence 9999999999999999999999999999999999999999973 489999999999999999999999999999999
Q ss_pred EEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchh
Q psy13776 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAA 512 (539)
Q Consensus 433 IvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~ 512 (539)
|||||+||++| +|||||++.|+||+|+.+
T Consensus 336 IvLsr~La~~g---------------------------------------------------~yPAIDvl~S~SR~~~~~ 364 (439)
T PRK06936 336 IILSRKLAAAN---------------------------------------------------HYPAIDVLRSASRVMNQI 364 (439)
T ss_pred EEECHHHHhCC---------------------------------------------------CCCccCCcccccccchhh
Confidence 99999999999 699999999999999999
Q ss_pred hhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 513 QTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 513 ~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
++++| +.+.++|+ +|++|+|+.
T Consensus 365 ~~~~~~~~a~~~r~---~la~y~e~e 387 (439)
T PRK06936 365 VSKEHKTWAGRLRE---LLAKYEEVE 387 (439)
T ss_pred CCHHHHHHHHHHHH---HHHcchHHH
Confidence 99999 77888888 888888763
No 18
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=1.9e-91 Score=749.39 Aligned_cols=354 Identities=20% Similarity=0.256 Sum_probs=315.8
Q ss_pred hhcccccccCcee---eecCCeeEEccchhhhhcccccc-cCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEec
Q psy13776 66 QMSLLLRRPPGRE---AYPGDVFYLHSRLLERSAKMSEA-HGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETE 141 (539)
Q Consensus 66 ei~g~~~e~~G~v---~~IGDg~gL~~~~~~~~gEVV~f-~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg 141 (539)
++.+.+++..|.. +.+|+.|.+.+......+||++| ++ +.+.+++|+++.|++.|+.|..|+
T Consensus 8 ~i~g~vi~v~g~~~~~~~ige~~~i~~~~~~~~~eVv~~l~~--------------~~v~l~~~~~~~gl~~G~~V~~tg 73 (461)
T PRK12597 8 KIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDE--------------TTVRAIALGSTSGLARGDEVRNTG 73 (461)
T ss_pred EEECcEEEEEECCCCCcCccCEEEEecCCCcEEEEEEEEcCC--------------CeEEEEEecCccCCCCCCEEEeCC
Confidence 4567778888887 99999999954222366788888 44 669999999999999999999999
Q ss_pred ccccccCCCcccceeE--eeeccCCCCCcccchhc---cccccccccccccccccccceeeeeeeeccccceeeeeccCC
Q psy13776 142 LFYKVDRGSINCGQLI--IGDRQTGKTALAIDTII---NQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQ 216 (539)
Q Consensus 142 ~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~---~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~g 216 (539)
++++||+|++|||||+ +|+|+|+++++.....+ ..++++..|..+++||+||||+||+|+|||||||++|||++|
T Consensus 74 ~~~~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G 153 (461)
T PRK12597 74 GPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAG 153 (461)
T ss_pred CceEEEcChhhcCCEEeeccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCC
Confidence 9999999999999999 99999999877543322 223444444455999999999999999999999999999999
Q ss_pred CCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHH
Q psy13776 217 TGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTV 296 (539)
Q Consensus 217 tGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev 296 (539)
+|||+|+.+++.|+... +..+|||++||||+|||
T Consensus 154 ~GKt~Ll~~~~~~~~~~----------------------------------------------~~dv~V~~liGER~rEv 187 (461)
T PRK12597 154 VGKTVLMMELIFNISKQ----------------------------------------------HSGSSVFAGVGERSREG 187 (461)
T ss_pred CChhHHHHHHHHHHHhh----------------------------------------------CCCEEEEEcCCcchHHH
Confidence 99999995555444321 12479999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHC-CCcEEEEecChhHHHHHhHHhhhccCCCCCCC
Q psy13776 297 AQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGRE 375 (539)
Q Consensus 297 ~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~-GkdVLli~DslTr~A~A~Reisl~lgepP~r~ 375 (539)
+||+++++++++|+||++|++|+|+||.+|+++||+|+|+||||||+ |+|||+++||+||||+|+||||+++||||+++
T Consensus 188 ~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl~~gepP~~~ 267 (461)
T PRK12597 188 HELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRV 267 (461)
T ss_pred HHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEeccchHHHHHHHHHHHhcCCCCCcC
Confidence 99999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCccc
Q psy13776 376 AYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGV 455 (539)
Q Consensus 376 gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~ 455 (539)
||||++|+.+++|+|||++. ++||||+||||++++||++|||||+++||+||||+|||+||++|
T Consensus 268 GYPpsvfs~l~~l~ERag~~----~~GSIT~i~tVl~~~dD~~dPI~d~~~~ilDG~IvLsr~La~~g------------ 331 (461)
T PRK12597 268 GYQPTLASEVAELQERIAST----KNGSITSIQAVYVPADDLTDPAAVAIFSHLDSTVVLSRAQAAKG------------ 331 (461)
T ss_pred CcCchhHHHHHHHHHhhcCC----CCccccEEEEEEecCCCCCCccHHHHHhhcceEEEEcHHHHhCC------------
Confidence 99999999999999999863 47999999999999999999999999999999999999999999
Q ss_pred EEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccC-chhhhHHH-HHhhhhhhHHHHHHHh
Q psy13776 456 VVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVG-SAAQTRAM-KQTGKIRSWNGWLSLL 533 (539)
Q Consensus 456 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~-~~~~~~~~-~~~~~~r~~~~~~~~~ 533 (539)
+|||||++.|+||++ +.+.+++| +.+.++|+ +|++|
T Consensus 332 ---------------------------------------~yPAIDvl~S~SR~~~~~i~~~~h~~~a~~~r~---~la~y 369 (461)
T PRK12597 332 ---------------------------------------IYPAIDPLASSSNLLDPLVVGERHYDAAIEVKR---ILQRY 369 (461)
T ss_pred ---------------------------------------CCCccCCccccccccccccCCHHHHHHHHHHHH---HHHhh
Confidence 799999999999999 66788888 77888888 88888
Q ss_pred hhhh
Q psy13776 534 KQLY 537 (539)
Q Consensus 534 ~~~~ 537 (539)
+|+.
T Consensus 370 ~e~e 373 (461)
T PRK12597 370 KELE 373 (461)
T ss_pred hhHH
Confidence 8763
No 19
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=1.2e-90 Score=740.11 Aligned_cols=316 Identities=21% Similarity=0.282 Sum_probs=289.5
Q ss_pred CcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhc---cccccccccccccccccc
Q psy13776 118 GDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTII---NQKRKKRRRLLKYNLLSA 192 (539)
Q Consensus 118 d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~---~~~~~~r~ri~~~epl~T 192 (539)
+.+.+++|+++.|++.|++|.+|+++++||||++|||||+ +|+|+||++++...+.. ..+|++..|..+++||+|
T Consensus 45 ~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~lLGRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~T 124 (449)
T TIGR03305 45 HHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFET 124 (449)
T ss_pred CeEEEEEccCcccCCCCCEEEecCCceEEEcChhhcCCEEccCccccCCCCCCCCccccchhcCCCCchhcccCCccccc
Confidence 7799999999999999999999999999999999999999 99999999876544322 233444445455999999
Q ss_pred cceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHH
Q psy13776 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 272 (539)
Q Consensus 193 GIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~ 272 (539)
|||+||+|+|||||||++|||++|+|||+|+.+++.|++..
T Consensus 125 GIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~~~~~~~--------------------------------------- 165 (449)
T TIGR03305 125 GIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQ--------------------------------------- 165 (449)
T ss_pred CceeeccccccccCCEEEeecCCCCChhHHHHHHHHHHHhc---------------------------------------
Confidence 99999999999999999999999999999997777765532
Q ss_pred HhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHH-CCCcEEEEe
Q psy13776 273 AYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIY 351 (539)
Q Consensus 273 ~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd-~GkdVLli~ 351 (539)
+..+|||++||||++||++|++++++.++|+||++|++|+|+||.+|+++||+|+|+|||||| +|+|||+++
T Consensus 166 -------~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~ 238 (449)
T TIGR03305 166 -------HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLI 238 (449)
T ss_pred -------CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 124799999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred cChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccce
Q psy13776 352 DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDG 431 (539)
Q Consensus 352 DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDG 431 (539)
||+||||+|+||||+++||||+++||||++|+.||+|+||||+. ++||||+||+|++|+||++|||||+++|||||
T Consensus 239 DslTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~----~~GSIT~i~~V~~~~dD~~dPi~d~~~silDG 314 (449)
T TIGR03305 239 DNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATT----SDGAITSIQAVYVPADDFTDPAAVHTFSHLSA 314 (449)
T ss_pred cChHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCC----CCcCeeEEEEEEccCCCCCCchhHhhhhhcce
Confidence 99999999999999999999999999999999999999999973 47999999999999999999999999999999
Q ss_pred eEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccC-c
Q psy13776 432 QIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVG-S 510 (539)
Q Consensus 432 qIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~-~ 510 (539)
||||||+||++| +|||||++.|+||+| +
T Consensus 315 ~IvLsr~La~~g---------------------------------------------------~yPAIDvl~S~SR~~~~ 343 (449)
T TIGR03305 315 SLVLSRKRASEG---------------------------------------------------LYPAIDPLQSTSKMATP 343 (449)
T ss_pred EEEEcHHHHhCC---------------------------------------------------CCCccCCCcchhhcCCc
Confidence 999999999999 799999999999999 5
Q ss_pred hhhhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 511 AAQTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 511 ~~~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
+.+.+.| +.+.++|+ +|++|+|+.
T Consensus 344 ~i~~~~h~~~a~~~~~---~l~~y~e~~ 368 (449)
T TIGR03305 344 GIVGERHYDLAREVRQ---TLAQYEELK 368 (449)
T ss_pred ccCCHHHHHHHHHHHH---HHHHHHHHH
Confidence 5667888 77888888 888888864
No 20
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.1e-90 Score=737.05 Aligned_cols=353 Identities=22% Similarity=0.289 Sum_probs=316.7
Q ss_pred hhhcccccccCce--eeecCCeeEEccchh-hhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEec
Q psy13776 65 RQMSLLLRRPPGR--EAYPGDVFYLHSRLL-ERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETE 141 (539)
Q Consensus 65 ~ei~g~~~e~~G~--v~~IGDg~gL~~~~~-~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg 141 (539)
.++.+.+++..|+ .+++||.|.+..... ...+||++|.+ +++.+++|+++.|++.|++|++|+
T Consensus 22 ~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~--------------~~~~l~~~~~~~gi~~g~~V~~tg 87 (442)
T PRK08927 22 VAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRG--------------DRALLMPFGPLEGVRRGCRAVIAN 87 (442)
T ss_pred EEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcC--------------CeEEEEEccCccCCCCCCEEEeCC
Confidence 4678888899998 789999999954222 36778888877 669999999999999999999999
Q ss_pred ccccccCCCcccceeE--eeeccCCCCCcccc-hh---ccccccccccccccccccccceeeeeeeeccccceeeeeccC
Q psy13776 142 LFYKVDRGSINCGQLI--IGDRQTGKTALAID-TI---INQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDR 215 (539)
Q Consensus 142 ~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~-~~---~~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~ 215 (539)
++++||+|++|||||+ +|+|+||++++... .. ...++++..|..+++||+||||+||+|+||++|||++|||++
T Consensus 88 ~~~~v~vg~~llGRVid~~G~piDg~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~s 167 (442)
T PRK08927 88 AAAAVRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGS 167 (442)
T ss_pred CccEEECChhhCCCEEccCCCCccCCCCCCCCcccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCC
Confidence 9999999999999999 99999999877543 22 223344444445599999999999999999999999999999
Q ss_pred CCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhH
Q psy13776 216 QTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRST 295 (539)
Q Consensus 216 gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~e 295 (539)
|+|||+|+ .+|+++... ..+||++||||++|
T Consensus 168 G~GKTtLL-~~I~~~~~~------------------------------------------------d~~v~~~iGER~rE 198 (442)
T PRK08927 168 GVGKSVLL-SMLARNADA------------------------------------------------DVSVIGLIGERGRE 198 (442)
T ss_pred CCCHHHHH-HHHHhccCC------------------------------------------------CEEEEEEEecCcHH
Confidence 99999997 677765432 24678999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCC
Q psy13776 296 VAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGRE 375 (539)
Q Consensus 296 v~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~ 375 (539)
|++|+++..+++.|+||++|++|||+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++
T Consensus 199 v~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~ 278 (442)
T PRK08927 199 VQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTK 278 (442)
T ss_pred HHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCcHHHHhhhhHHHHhcCCCCccc
Confidence 99999877676779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCccc
Q psy13776 376 AYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGV 455 (539)
Q Consensus 376 gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~ 455 (539)
||||++|+.||+|+||||+.. .++||||+||+|++|+||++|||||+++||+||||||||+||++|
T Consensus 279 Gyp~~~f~~l~~l~ERaG~~~--~~~GSIT~i~tVlv~gdD~~dpi~d~~~~i~Dg~ivLsr~La~~g------------ 344 (442)
T PRK08927 279 GYTPTVFAELPRLLERAGPGP--IGEGTITGLFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERG------------ 344 (442)
T ss_pred CCCcchHHHhhHHHHHhcCCC--CCCeeeeeeeeeEccCCCCCCchhhhhhccccEEEEEcHHHHhCC------------
Confidence 999999999999999999864 358999999999999999999999999999999999999999999
Q ss_pred EEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhh
Q psy13776 456 VVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLK 534 (539)
Q Consensus 456 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~ 534 (539)
+|||||++.|+||+++.++++.| +.+..+|+ +|++|+
T Consensus 345 ---------------------------------------~~PAIDvl~S~SR~~~~~~~~~~~~~a~~~r~---~l~~y~ 382 (442)
T PRK08927 345 ---------------------------------------RYPAINVLKSVSRTMPGCNDPEENPLVRRARQ---LMATYA 382 (442)
T ss_pred ---------------------------------------CCCccCCcccccccccccCCHHHHHHHHHHHH---HHHHHH
Confidence 79999999999999999999999 77888888 777777
Q ss_pred hh
Q psy13776 535 QL 536 (539)
Q Consensus 535 ~~ 536 (539)
++
T Consensus 383 e~ 384 (442)
T PRK08927 383 DM 384 (442)
T ss_pred HH
Confidence 75
No 21
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.8e-90 Score=735.81 Aligned_cols=353 Identities=23% Similarity=0.343 Sum_probs=318.5
Q ss_pred hhhcccccccCceeeecCCeeEEccchh----hhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEe
Q psy13776 65 RQMSLLLRRPPGREAYPGDVFYLHSRLL----ERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLET 140 (539)
Q Consensus 65 ~ei~g~~~e~~G~v~~IGDg~gL~~~~~----~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~t 140 (539)
.++.|+++++.|+.+++||.|.+.+... ...+||++|++ +.+.+++|+++.|++.|+.|++|
T Consensus 32 ~~v~g~~~~~~g~~~~~ge~c~i~~~~~~~~~~~~~eVv~~~~--------------~~~~l~~~~~~~gi~~g~~V~~t 97 (451)
T PRK05688 32 LRMVGLTLEAEGLRAAVGSRCLVINDDSYHPVQVEAEVMGFSG--------------DKVFLMPVGSVAGIAPGARVVPL 97 (451)
T ss_pred EEEEecEEEEecCCCCCCCEEEEecCCCccccceEEEEEEEcC--------------CEEEEEEccCccCCCCCCEEEEC
Confidence 5688999999999999999999944222 36789999876 66999999999999999999999
Q ss_pred cccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccC
Q psy13776 141 ELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDR 215 (539)
Q Consensus 141 g~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~ 215 (539)
+++++||+|++|||||+ +|+|+||++++......+ .++++..|..+++||+|||++||.++||++|||++|||++
T Consensus 98 g~~~~v~vg~~llGRV~d~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~s 177 (451)
T PRK05688 98 ADTGRLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGT 177 (451)
T ss_pred CCccEEEecccccCCEEeccCceecCCCCCCccceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEECCC
Confidence 99999999999999999 999999998775443322 2334434444499999999999999999999999999999
Q ss_pred CCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhH
Q psy13776 216 QTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRST 295 (539)
Q Consensus 216 gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~e 295 (539)
|+|||||+ .+|+++.. ..++|+++||+|++|
T Consensus 178 G~GKSTLl-~~I~g~~~------------------------------------------------~dv~V~g~Ig~rg~e 208 (451)
T PRK05688 178 GVGKSVLL-GMMTRFTE------------------------------------------------ADIIVVGLIGERGRE 208 (451)
T ss_pred CCCHHHHH-HHHhCCCC------------------------------------------------CCEEEEEEeCcCcHh
Confidence 99999997 66654321 125688999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCC
Q psy13776 296 VAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGRE 375 (539)
Q Consensus 296 v~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~ 375 (539)
+++|++.+++.+.++|||+|++|+|+||.+|+++||+|+|+||||||+|+|||++||||||||+||||||+++||||+++
T Consensus 209 v~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~ 288 (451)
T PRK05688 209 VKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATK 288 (451)
T ss_pred HHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecchhHHHHHHHHHHHhcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCccc
Q psy13776 376 AYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGV 455 (539)
Q Consensus 376 gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~ 455 (539)
||||++|+.||+|+||||+.. .++||||+||||++++||++|||||+++|||||||||||+||++|
T Consensus 289 GYp~svfs~l~~l~ERag~~~--~~~GSITai~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g------------ 354 (451)
T PRK05688 289 GYPPSVFAKLPKLVERAGNAE--PGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEG------------ 354 (451)
T ss_pred CCCchHHHHhHHHHHHhcCCC--CCCceeeEEEEEEecCCCCCCchHHHHHhhccEEEEEcHHHHhCC------------
Confidence 999999999999999999853 348999999999999999999999999999999999999999999
Q ss_pred EEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhh
Q psy13776 456 VVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLK 534 (539)
Q Consensus 456 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~ 534 (539)
+|||||++.|+||+|++++++.| +.+.++|+ +|+.|+
T Consensus 355 ---------------------------------------~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~---~la~y~ 392 (451)
T PRK05688 355 ---------------------------------------HYPAIDIEASISRVMPQVVDPEHLRRAQRFKQ---LWSRYQ 392 (451)
T ss_pred ---------------------------------------CCCccCCccccCccchhhCCHHHHHHHHHHHH---HHHHHH
Confidence 69999999999999999999999 67788898 788887
Q ss_pred hh
Q psy13776 535 QL 536 (539)
Q Consensus 535 ~~ 536 (539)
+.
T Consensus 393 ~~ 394 (451)
T PRK05688 393 QS 394 (451)
T ss_pred HH
Confidence 53
No 22
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=2.6e-88 Score=721.72 Aligned_cols=372 Identities=23% Similarity=0.308 Sum_probs=322.5
Q ss_pred hHHHHHHHHHHHhcCcchh-hhhhhhcccccccCceeeecCCe---eEEccchhhhhccccccc-CCeEEEEEeccccCC
Q psy13776 43 AAEISSILEERILGSAPKA-VAYRQMSLLLRRPPGREAYPGDV---FYLHSRLLERSAKMSEAH-GGGSLTALPVIETQA 117 (539)
Q Consensus 43 ~~ei~~~l~~~i~~~~~~~-~~~~ei~g~~~e~~G~v~~IGDg---~gL~~~~~~~~gEVV~f~-~g~~G~vl~l~~~~~ 117 (539)
.++++..++++|..|+.++ .. ...|.+..|++. ..+.++ ..+|++.++ ++..|.|+.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~---------~~~G~v~~v~g~~~~~~~~~~---~~ge~~~i~~~~~~~eVv~~~~--- 70 (440)
T PRK06820 6 IARLTPRLQQQLTRPSAPPEGL---------RYRGPIVEIGPTLLRASLPGV---AQGELCRIEPQGMLAEVVSIEQ--- 70 (440)
T ss_pred HHHHHHHHHHHHHhcCCCCCce---------eEeeEEEEEECcEEEEEECCC---CcCCEEEEecCCeEEEEEEEeC---
Confidence 4677899999999998876 33 344555555444 122223 455555553 335566666666
Q ss_pred CcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccch--hcccccccccccccccccccc
Q psy13776 118 GDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDT--IINQKRKKRRRLLKYNLLSAG 193 (539)
Q Consensus 118 d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~--~~~~~~~~r~ri~~~epl~TG 193 (539)
|++.+++|+++.|++.|++|++|+++++||+|++|||||+ +|+|+|+++++.... +...+|++..|..+++|+.||
T Consensus 71 ~~~~l~~~~~~~gi~~g~~v~~tg~~~~v~vg~~llGrv~d~~G~pld~~~~~~~~~~~i~~~~p~p~~R~~~~~~l~TG 150 (440)
T PRK06820 71 EMALLSPFASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDGGPPLTGQWRELDCPPPSPLTRQPIEQMLTTG 150 (440)
T ss_pred CeEEEEEccCccCCCCCCEEEECCCCcEEEechhhcCCEECccCCccCCCCCCCcccccccCCCCChhhcCCchhhccCC
Confidence 8899999999999999999999999999999999999999 999999987653221 112234443444459999999
Q ss_pred ceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHH
Q psy13776 194 IKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVA 273 (539)
Q Consensus 194 IraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~ 273 (539)
+|+||.|+||++|||++|||++|+|||+|+ .+|+++...
T Consensus 151 i~aID~l~~i~~Gqri~I~G~sG~GKStLl-~~I~~~~~~---------------------------------------- 189 (440)
T PRK06820 151 IRAIDGILSCGEGQRIGIFAAAGVGKSTLL-GMLCADSAA---------------------------------------- 189 (440)
T ss_pred CceecceEEecCCCEEEEECCCCCChHHHH-HHHhccCCC----------------------------------------
Confidence 999999999999999999999999999997 677755422
Q ss_pred hhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecC
Q psy13776 274 YRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDD 353 (539)
Q Consensus 274 ~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~Ds 353 (539)
..+||++||||++|+.+|++.+...+.++||++|++++|+||.+|+++||+|+|+||||||+|+|||+++||
T Consensus 190 --------dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Ds 261 (440)
T PRK06820 190 --------DVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADS 261 (440)
T ss_pred --------CEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 257889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeE
Q psy13776 354 LSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 433 (539)
Q Consensus 354 lTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqI 433 (539)
+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+||||++++||++|||||+++||+||||
T Consensus 262 ltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~----~~GSIT~i~tVl~~gdD~~dpI~d~~~~ilDg~i 337 (440)
T PRK06820 262 LTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNS----DRGSITAFYTVLVEGDDMNEPVADEVRSLLDGHI 337 (440)
T ss_pred hhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC----CCcceeEEEEEEccCCCCCCcchhhhccccceEE
Confidence 999999999999999999999999999999999999999984 4899999999999999999999999999999999
Q ss_pred EeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhh
Q psy13776 434 FLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQ 513 (539)
Q Consensus 434 vLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~ 513 (539)
||||+||++| +|||||++.|+||++++++
T Consensus 338 vLsr~La~~g---------------------------------------------------~yPAIDvl~S~SR~~~~~~ 366 (440)
T PRK06820 338 VLSRRLAGAG---------------------------------------------------HYPAIDIAASVSRIMPQIV 366 (440)
T ss_pred EECHHHHhCC---------------------------------------------------CCCccCCcccccccchhhC
Confidence 9999999999 6999999999999999999
Q ss_pred hHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 514 TRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 514 ~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
++.| +.+..+|+ +|++|+|+
T Consensus 367 ~~~~~~~a~~~r~---~l~~y~e~ 387 (440)
T PRK06820 367 SAGQLAMAQKLRR---MLACYQEI 387 (440)
T ss_pred CHHHHHHHHHHHH---HHHhhhHH
Confidence 9999 77788888 88888875
No 23
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.2e-88 Score=721.82 Aligned_cols=352 Identities=24% Similarity=0.331 Sum_probs=310.0
Q ss_pred hhcccccccCceee--ecCCeeEEccchh-hhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecc
Q psy13776 66 QMSLLLRRPPGREA--YPGDVFYLHSRLL-ERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 142 (539)
Q Consensus 66 ei~g~~~e~~G~v~--~IGDg~gL~~~~~-~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~ 142 (539)
++.+.+++..|+.. ++||.|.+.+... +..+||++|++ +.+.+++|+++.||+.|+.|+.|++
T Consensus 5 ~v~g~~~~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~--------------~~v~l~~~~~~~gi~~G~~V~~tg~ 70 (418)
T TIGR03498 5 AVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNG--------------DRVLLMPFEPLEGVGLGCAVFAREG 70 (418)
T ss_pred EEECcEEEEEcCCCccCCCCEEEEEcCCCCEEEEEEEEEcC--------------CeEEEEEccCCcCCCCCCEEEECCC
Confidence 35667778888776 8888888843211 24556666654 7799999999999999999999999
Q ss_pred cccccCCCcccceeE--eeeccCCCCCcccc-hhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCC
Q psy13776 143 FYKVDRGSINCGQLI--IGDRQTGKTALAID-TIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQ 216 (539)
Q Consensus 143 ~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~-~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~g 216 (539)
+++||+|++|||||+ +|+|+||++++... ...+ .++++..|..+++||+||+++||.++|+++|||++|||++|
T Consensus 71 ~~~i~vg~~lLGRViD~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG 150 (418)
T TIGR03498 71 PLAVRPHPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSG 150 (418)
T ss_pred ccEEEeChhhcCCEECCCCCccCCCCCCCCCcceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCC
Confidence 999999999999999 99999999877443 2111 23333334444999999999999999999999999999999
Q ss_pred CCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHH
Q psy13776 217 TGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTV 296 (539)
Q Consensus 217 tGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev 296 (539)
+|||+|+ .+|+++... ...+|+++|||++||
T Consensus 151 ~GKTtLl-~~I~~~~~~------------------------------------------------~~gvi~~iGer~~ev 181 (418)
T TIGR03498 151 VGKSTLL-SMLARNTDA------------------------------------------------DVVVIALVGERGREV 181 (418)
T ss_pred CChHHHH-HHHhCCCCC------------------------------------------------CEEEEEEEeeechHH
Confidence 9999997 666644321 246789999999999
Q ss_pred HHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCC
Q psy13776 297 AQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREA 376 (539)
Q Consensus 297 ~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~g 376 (539)
++|+++..+.+.|+||++|++|+|+||.+|+++||+|||+||||||+|+|||+++||+||||+|+||||+++||||+++|
T Consensus 182 ~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~REisl~~gepP~~~g 261 (418)
T TIGR03498 182 REFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARG 261 (418)
T ss_pred HHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCcccc
Confidence 99999877778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccE
Q psy13776 377 YPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVV 456 (539)
Q Consensus 377 yPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~ 456 (539)
|||++|+.||||+||||+.. .++||||+||||++|+||++|||||+++|||||||||||+||++|
T Consensus 262 yp~~vf~~l~~L~ERag~~~--~~~GSIT~~~tVl~~gdd~~dpi~d~~~si~DG~ivLsr~la~~g------------- 326 (418)
T TIGR03498 262 YTPSVFSELPRLLERAGPGA--EGKGSITGIFTVLVDGDDHNEPVADAVRGILDGHIVLDRAIAERG------------- 326 (418)
T ss_pred CCchhhhhhhHHHHHhccCC--CCCcceeeeEEEeccCCCCCCcchhhhheeeeeEEEECHHHHhCC-------------
Confidence 99999999999999999853 458999999999999999999999999999999999999999999
Q ss_pred EecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhh
Q psy13776 457 VFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQ 535 (539)
Q Consensus 457 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~ 535 (539)
+|||||++.|+||+|+.++++.| +.+.++|+ +|++|++
T Consensus 327 --------------------------------------~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~---~l~~y~e 365 (418)
T TIGR03498 327 --------------------------------------RYPAINVLASVSRLAPRVWSPEERKLVRRLRA---LLARYEE 365 (418)
T ss_pred --------------------------------------CCCccCCcccccccchhhcCHHHHHHHHHHHH---HHHhhHH
Confidence 79999999999999999999999 77888999 8888887
Q ss_pred h
Q psy13776 536 L 536 (539)
Q Consensus 536 ~ 536 (539)
+
T Consensus 366 ~ 366 (418)
T TIGR03498 366 T 366 (418)
T ss_pred H
Confidence 5
No 24
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=4.4e-88 Score=720.69 Aligned_cols=350 Identities=25% Similarity=0.342 Sum_probs=309.6
Q ss_pred hhcccccccCceeeecCCeeEEccchhh--hhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEeccc
Q psy13776 66 QMSLLLRRPPGREAYPGDVFYLHSRLLE--RSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELF 143 (539)
Q Consensus 66 ei~g~~~e~~G~v~~IGDg~gL~~~~~~--~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~ 143 (539)
++.+.++++.|+.+++||.|.+...... ..+|||+|++ +++.+++|+++.|++.|++|++|+++
T Consensus 30 ~v~g~~i~~~g~~~~~ge~~~i~~~~g~~~~~~eVv~~~~--------------~~~~l~~~~~t~gi~~g~~V~~tg~~ 95 (441)
T PRK09099 30 EVIGTLLRVSGLDVTLGELCELRQRDGTLLQRAEVVGFSR--------------DVALLSPFGELGGLSRGTRVIGLGRP 95 (441)
T ss_pred EEECCEEEEeccCCCCCCEEEEecCCCCeeeEEEEEEEEC--------------CEEEEEEccCCcCCCCCCEEEeCCCc
Confidence 4667777777777777777777321111 3456666655 77999999999999999999999999
Q ss_pred ccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCCC
Q psy13776 144 YKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTG 218 (539)
Q Consensus 144 ~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtG 218 (539)
++||+|++|||||+ +|+|+||++++...+..+ .+|++..|..+++||+||+++||.++|+++|||++|||++|+|
T Consensus 96 ~~v~vg~~lLGrV~d~~G~piD~~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~G 175 (441)
T PRK09099 96 LSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVG 175 (441)
T ss_pred cEEEeccccccCEEcccCCccCCCCCCccccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCC
Confidence 99999999999999 999999998775443322 2344434434599999999999999999999999999999999
Q ss_pred chHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHH
Q psy13776 219 KTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQ 298 (539)
Q Consensus 219 KTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e 298 (539)
||+|+ .+|+.+... ..+||++||||++|+++
T Consensus 176 KTtLl-~~ia~~~~~------------------------------------------------d~~vi~~iGer~~ev~e 206 (441)
T PRK09099 176 KSTLM-GMFARGTQC------------------------------------------------DVNVIALIGERGREVRE 206 (441)
T ss_pred HHHHH-HHHhCCCCC------------------------------------------------CeEEEEEEccChHHHHH
Confidence 99997 555533211 14789999999999999
Q ss_pred HHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCC
Q psy13776 299 IVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYP 378 (539)
Q Consensus 299 ~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyP 378 (539)
|++.+.+.+.|+||++|++|+|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++|||
T Consensus 207 f~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTr~A~A~REisl~~gepP~~~gyP 286 (441)
T PRK09099 207 FIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFP 286 (441)
T ss_pred HHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEe
Q psy13776 379 GDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVF 458 (539)
Q Consensus 379 g~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~ 458 (539)
|++|+.||||+||||.. ++||||+||||++++||++|||||+++|||||||||||+||++|
T Consensus 287 ~~vf~~l~~l~ERag~~----~~GSIT~i~tVl~~~dd~~dpI~d~~~~i~DG~ivLsr~La~~g--------------- 347 (441)
T PRK09099 287 PSVFAELPRLLERAGMG----ETGSITALYTVLAEDESGSDPIAEEVRGILDGHMILSREIAARN--------------- 347 (441)
T ss_pred ccHHHHhHHHHHhhcCC----CCcchheeEEEEecCCCcCCcchhhhheecceEEEEcHHHHhCC---------------
Confidence 99999999999999952 48999999999999999999999999999999999999999999
Q ss_pred cccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 459 GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 459 ~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
+|||||++.|+||+|+.++.+.| +.+.++|+ +|+.|+++
T Consensus 348 ------------------------------------~yPAIDvl~S~SR~~~~~~~~~~~~~a~~lr~---~la~y~e~ 387 (441)
T PRK09099 348 ------------------------------------QYPAIDVLGSLSRVMPQVVPREHVQAAGRLRQ---LLAKHREV 387 (441)
T ss_pred ------------------------------------CCCccCCccccCccchhcCCHHHHHHHHHHHH---HHHhhHHH
Confidence 79999999999999999999999 77888888 88888876
No 25
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=2.4e-87 Score=711.20 Aligned_cols=352 Identities=25% Similarity=0.358 Sum_probs=313.7
Q ss_pred hhcccccccCceeeecCCeeEEccchh-hhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccc
Q psy13776 66 QMSLLLRRPPGREAYPGDVFYLHSRLL-ERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFY 144 (539)
Q Consensus 66 ei~g~~~e~~G~v~~IGDg~gL~~~~~-~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~ 144 (539)
++.+.++++.|..+.+||.|.+....+ ...+||++|++ +.+.+++|+++.|++.|+.|+.|++++
T Consensus 5 ~v~g~~v~v~g~~~~~ge~~~i~~~~~~~~~~eVv~~~~--------------~~v~l~~~~~t~gl~~G~~V~~tg~~~ 70 (411)
T TIGR03496 5 RVVGLVLEAVGLRAPVGSRCEIESSDGDPIEAEVVGFRG--------------DRVLLMPLEDVEGLRPGARVFPLEGPL 70 (411)
T ss_pred EEECcEEEEEeCCCCcCCEEEEEcCCCCeEEEEEEEecC--------------CEEEEEEccCccCCCCCCEEEECCCcc
Confidence 456777788888888888888842111 14566666654 779999999999999999999999999
Q ss_pred cccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCCCc
Q psy13776 145 KVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGK 219 (539)
Q Consensus 145 ~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGK 219 (539)
+||+|++|||||+ +|+|+||++++.....++ .++++..|..+++|+.||+++||.++||++|||++|||++|+||
T Consensus 71 ~v~vg~~llGrVid~~G~pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GK 150 (411)
T TIGR03496 71 RLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGK 150 (411)
T ss_pred EEEcchhhcCCEECCCCCCcCCCCCCCcccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCH
Confidence 9999999999999 999999998775443322 23444445445999999999999999999999999999999999
Q ss_pred hHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHH
Q psy13776 220 TALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQI 299 (539)
Q Consensus 220 TtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~ 299 (539)
|+|+ .+|+++... ...||++||||++|+.+|
T Consensus 151 TtLl-~~I~~~~~~------------------------------------------------~~~vi~~iGer~~ev~e~ 181 (411)
T TIGR03496 151 STLL-GMMARYTEA------------------------------------------------DVVVVGLIGERGREVKEF 181 (411)
T ss_pred HHHH-HHHhcCCCC------------------------------------------------CEEEEEEEecChHHHHHH
Confidence 9997 677754321 246789999999999999
Q ss_pred HHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCC
Q psy13776 300 VKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPG 379 (539)
Q Consensus 300 ~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg 379 (539)
++++++.++|+||++|++|+|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||
T Consensus 182 ~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~ 261 (411)
T TIGR03496 182 IEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPP 261 (411)
T ss_pred HHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEec
Q psy13776 380 DVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFG 459 (539)
Q Consensus 380 ~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~ 459 (539)
++|+.|++|+||||+++ .++||||+||+|++++||++|||||+++|||||||+|||+||++|
T Consensus 262 ~~f~~l~~l~ERag~~~--~~~GSIT~~~tv~~~~dd~~dpi~~~~~~i~dg~ivLsr~la~~g---------------- 323 (411)
T TIGR03496 262 SVFAKLPQLVERAGNGE--EGKGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLSRELAEQG---------------- 323 (411)
T ss_pred HHHHHhHHHHHHhcccC--CCCcceeEEEEEEccCCCCCCcchhhhcccccEEEEEchhHHhCC----------------
Confidence 99999999999999974 358999999999999999999999999999999999999999999
Q ss_pred ccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 460 NDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 460 ~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
+|||||++.|+||+++.++++.| +.+.++|+ +|++|+++
T Consensus 324 -----------------------------------~~PAId~~~S~SR~~~~~~~~~~~~~a~~~r~---~l~~y~e~ 363 (411)
T TIGR03496 324 -----------------------------------HYPAIDILASISRVMPDVVSPEHRQAARRFKQ---LLSRYQEN 363 (411)
T ss_pred -----------------------------------CCCccCCCcccccchhhhCCHHHHHHHHHHHH---HHHHhHHH
Confidence 79999999999999999999999 77888888 88888875
No 26
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=6.3e-88 Score=680.24 Aligned_cols=256 Identities=23% Similarity=0.407 Sum_probs=231.3
Q ss_pred cccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCC
Q psy13776 143 FYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQT 217 (539)
Q Consensus 143 ~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gt 217 (539)
+++||||++|||||+ +|+|+|+++++..++..+ .++++..|..++|||+||||+||+|+|||||||++|||++|+
T Consensus 1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence 368999999999999 999999998775443322 224444444459999999999999999999999999999999
Q ss_pred CchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHH
Q psy13776 218 GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVA 297 (539)
Q Consensus 218 GKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~ 297 (539)
|||+|+. +|++|+.. +. .++.++|||++||||+|||+
T Consensus 81 GKt~L~~-~i~~~~~~--------------------~~----------------------~~~~~v~V~~~IGeR~rev~ 117 (276)
T cd01135 81 PHNELAA-QIARQAGV--------------------VG----------------------EEENFAVVFAAMGITMEDAR 117 (276)
T ss_pred ChhHHHH-HHHHhhhc--------------------cc----------------------cCCCCEEEEEEeccccHHHH
Confidence 9999984 68887642 00 11246899999999999999
Q ss_pred HHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHC-CCcEEEEecChhHHHHHhHHhhhccCCCCCCCC
Q psy13776 298 QIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREA 376 (539)
Q Consensus 298 e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~-GkdVLli~DslTr~A~A~Reisl~lgepP~r~g 376 (539)
||+++++++++|+||++|++|+|+||.+|+++||+|||+||||||+ |+|||++|||+||||+||||||+++||||+++|
T Consensus 118 e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEisl~~gepP~~~g 197 (276)
T cd01135 118 FFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRG 197 (276)
T ss_pred HHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHHhccCCCCCccC
Confidence 9999999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhcc
Q psy13776 377 YPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 443 (539)
Q Consensus 377 yPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g 443 (539)
||||+|+.||+|+||||+++. ++||||+||+|++|+||++||||||++|||||||||||+||++|
T Consensus 198 yp~~vf~~~~~l~ERag~~~~--~~GSITa~~~V~~~~dD~~dpi~~~~~si~DG~ivLsr~la~~g 262 (276)
T cd01135 198 YPGYMYTDLATIYERAGRVEG--RNGSITQIPILTMPNDDITHPIPDLTGYITEGQIVLDRQLHNRG 262 (276)
T ss_pred cCccHHHHhhHHheecccCCC--CCeeEEEEEEEEccCCCcCcchHHHHHhhcceEEEEcHHHHhCC
Confidence 999999999999999999742 37999999999999999999999999999999999999999999
No 27
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=3.4e-87 Score=710.20 Aligned_cols=344 Identities=19% Similarity=0.207 Sum_probs=303.8
Q ss_pred hhcccccccCceeeecCCeeEEccchhhhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEeccccc
Q psy13776 66 QMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYK 145 (539)
Q Consensus 66 ei~g~~~e~~G~v~~IGDg~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~ 145 (539)
++.|.+++..++.+.+||.|.+........+||++| ++ +.+.+++|+++.|++.|++|.+||++++
T Consensus 10 ~i~G~~v~v~~~~~~~ge~~~i~~~~~~~~geVi~~-----------~~---~~v~~~~~~~t~Gl~~g~~V~~tg~~~~ 75 (436)
T PRK02118 10 DITGNVITVEAEGVGYGELATVERKDGSSLAQVIRL-----------DG---DKVTLQVFGGTRGISTGDEVVFLGRPMQ 75 (436)
T ss_pred EEECcEEEEEeCCCCCCCEEEEEcCCCCEEEEEEEE-----------cC---CEEEEEEecCCcCCCCCCEEEeCCCceE
Confidence 456777777777788888887742111234455444 44 7899999999999999999999999999
Q ss_pred ccCCCcccceeE--eeeccCCCCCcccch--hccccccccccccccccccccceeeeeeeeccccceeeeeccCCCCchH
Q psy13776 146 VDRGSINCGQLI--IGDRQTGKTALAIDT--IINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTA 221 (539)
Q Consensus 146 VpVG~~LLGRVv--lG~PiDgk~~i~~~~--~~~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGKTt 221 (539)
||||++|||||+ +|+|+|+++++..+. +...++++..|..+++||+||||+||+|+|||||||++|||++|+|||+
T Consensus 76 vpvg~~lLGRV~d~~G~PiD~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~ 155 (436)
T PRK02118 76 VTYSESLLGRRFNGSGKPIDGGPELEGEPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNA 155 (436)
T ss_pred EEcCccccCCEEccCCcccCCCCCCCcceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHH
Confidence 999999999999 999999987764433 1122344445556699999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHH
Q psy13776 222 LAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVK 301 (539)
Q Consensus 222 La~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~ 301 (539)
|+ .+|++|+.. .++||++||||++|+.+|++
T Consensus 156 L~-~~ia~~~~~------------------------------------------------~v~Vfa~iGeR~rE~~ef~~ 186 (436)
T PRK02118 156 LL-ARIALQAEA------------------------------------------------DIIILGGMGLTFDDYLFFKD 186 (436)
T ss_pred HH-HHHHHhhCC------------------------------------------------CeEEEEEeccchhHHHHHHH
Confidence 96 889988753 25899999999999999999
Q ss_pred HHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCC-CcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCc
Q psy13776 302 RLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNG-KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGD 380 (539)
Q Consensus 302 ~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~G-kdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~ 380 (539)
+++++++|+||++|++++|+||.+|+++||+|+|+||||||+| +|||+++|||||||+|+||||+++||||+++||||+
T Consensus 187 ~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAEyfrd~g~~~VLli~DdlTr~a~A~REIsl~~ge~P~r~GYpp~ 266 (436)
T PRK02118 187 TFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGS 266 (436)
T ss_pred HHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEeccCchHHHHHHHHHHHhcCCCCCCCCcCCc
Confidence 9999999999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred hhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEecc
Q psy13776 381 VFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGN 460 (539)
Q Consensus 381 vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~ 460 (539)
+|+.+++|+||||+.+ ++||||++|+|++|+||++|||||+++|||||||||||+|
T Consensus 267 lfs~L~~l~ERag~~~---~~GSITai~~V~~p~DD~tdPi~d~~~silDGqIvLsR~l--------------------- 322 (436)
T PRK02118 267 LYSDLASRYEKAVDFE---DGGSITIIAVTTMPGDDVTHPVPDNTGYITEGQFYLRRGR--------------------- 322 (436)
T ss_pred HHHHHHHHHHhcCCCC---CCeeEEEEEEEEcCCCCcCccHHHHHHHhcCcEEEecccc---------------------
Confidence 9999999999999863 5899999999999999999999999999999999999753
Q ss_pred cccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhh----HHH-HHhhhhhhHHHHHHHhhh
Q psy13776 461 DRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQT----RAM-KQTGKIRSWNGWLSLLKQ 535 (539)
Q Consensus 461 ~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~----~~~-~~~~~~r~~~~~~~~~~~ 535 (539)
||++.|+||+|+.+++ +.| +.+.++|+ +|++||+
T Consensus 323 --------------------------------------ID~l~S~SRl~~~v~g~~t~~~h~~~a~~l~~---~~a~y~e 361 (436)
T PRK02118 323 --------------------------------------IDPFGSLSRLKQLVIGKKTREDHGDLMNAMIR---LYADSRE 361 (436)
T ss_pred --------------------------------------ccCccccccccccccCccccHHHHHHHHHHHH---HHHHHHH
Confidence 7999999999999988 588 66778888 9999998
Q ss_pred hh
Q psy13776 536 LY 537 (539)
Q Consensus 536 ~~ 537 (539)
+.
T Consensus 362 ~~ 363 (436)
T PRK02118 362 AK 363 (436)
T ss_pred HH
Confidence 63
No 28
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=2.7e-87 Score=675.46 Aligned_cols=268 Identities=74% Similarity=1.102 Sum_probs=250.2
Q ss_pred ccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCCC
Q psy13776 144 YKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTG 218 (539)
Q Consensus 144 ~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtG 218 (539)
++||||++|||||+ +|+|+|+++++...+.++ .+|+...|..+++||+||||+||+|+|||||||++|||++|+|
T Consensus 2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence 58999999999999 999999998775444322 2344455555699999999999999999999999999999999
Q ss_pred chHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHH
Q psy13776 219 KTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQ 298 (539)
Q Consensus 219 KTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e 298 (539)
||+|++++|+||+.. +++|||++||||++||++
T Consensus 82 Kt~L~l~~i~~~~~~-----------------------------------------------~v~~V~~~iGer~~ev~e 114 (274)
T cd01132 82 KTAIAIDTIINQKGK-----------------------------------------------KVYCIYVAIGQKASTVAQ 114 (274)
T ss_pred ccHHHHHHHHHhcCC-----------------------------------------------CeEEEEEecccchHHHHH
Confidence 999988999988632 478999999999999999
Q ss_pred HHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCC
Q psy13776 299 IVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYP 378 (539)
Q Consensus 299 ~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyP 378 (539)
|++++++.++|+||++|++|+|+||.+|+++||+|||+||||||+|+|||+++|||||||+||||||+++||||+++|||
T Consensus 115 ~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~~ge~P~~~gYp 194 (274)
T cd01132 115 VVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYP 194 (274)
T ss_pred HHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHhcCCCCCCcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEe
Q psy13776 379 GDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVF 458 (539)
Q Consensus 379 g~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~ 458 (539)
|++|+.|++|+||||+++...++||||+||+|++|+||++|||||+++|||||||+|||+||++|
T Consensus 195 ~~~f~~~~~L~ERag~~~~~~~~GSIT~i~~V~~~~dD~~~pi~~~~~~i~dg~ivLsr~la~~g--------------- 259 (274)
T cd01132 195 GDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNKG--------------- 259 (274)
T ss_pred chHHHHhHHHHHHhhhccCCCCCcceEEEEEEEcCCCCcCcchHHHHHhhcCeEEEEcHHHHhCC---------------
Confidence 99999999999999998876679999999999999999999999999999999999999999999
Q ss_pred cccccccccceeeeccceeecccccccchhhccccCCCccccccccccccC
Q psy13776 459 GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVG 509 (539)
Q Consensus 459 ~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~ 509 (539)
+|||||++.|+||+|
T Consensus 260 ------------------------------------~yPaId~l~S~SR~g 274 (274)
T cd01132 260 ------------------------------------IRPAINVGLSVSRVG 274 (274)
T ss_pred ------------------------------------CCCCcCCcccccCCC
Confidence 799999999999997
No 29
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=9.8e-87 Score=723.34 Aligned_cols=352 Identities=20% Similarity=0.238 Sum_probs=299.6
Q ss_pred hcccccccCcee-eecCCeeEEccchhhhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEeccccc
Q psy13776 67 MSLLLRRPPGRE-AYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYK 145 (539)
Q Consensus 67 i~g~~~e~~G~v-~~IGDg~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~ 145 (539)
++|.+.++.|.. +++||.|.+. +++..|.|+.+++ |.+.+++|+++.|+++|++|++||++++
T Consensus 7 V~Gpvv~a~g~~~~~~gE~v~v~-------------~~~l~gEVi~~~~---d~a~iqvye~t~Gl~~G~~V~~tg~pls 70 (578)
T TIGR01043 7 VSGPLVVADGMKGAQMYEVVKVG-------------EEGLIGEIIRIEG---DKAFIQVYEETSGIKPGEPVVGTGAPLS 70 (578)
T ss_pred EECCEEEEecCCCCCcCCEEEEC-------------CCcEEEEEEEEcC---CeEEEEECCCCCCCCCCCEEEECCCccE
Confidence 344455555543 5555555552 1234555666555 8899999999999999999999999999
Q ss_pred ccCCCcccceeE--eeeccCCCCC----c----------ccchh------------------------------------
Q psy13776 146 VDRGSINCGQLI--IGDRQTGKTA----L----------AIDTI------------------------------------ 173 (539)
Q Consensus 146 VpVG~~LLGRVv--lG~PiDgk~~----i----------~~~~~------------------------------------ 173 (539)
|++|++|||||+ +|+|+|+.+. . ..+..
T Consensus 71 V~lGpglLGrV~DgigrPLd~~~~~~g~~i~rg~~~~~l~~~~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp 150 (578)
T TIGR01043 71 VELGPGLLGSIYDGVQRPLDVLKEKTGDFIARGVDAPGLDRDKKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPP 150 (578)
T ss_pred EEcCHHHhcceeccCCccccCcccccccccccCccCCCcCcccccccccccccCccccCCceEEEEecccceeeeeecCC
Confidence 999999999999 9999998732 1 11100
Q ss_pred -------------------------------------cc--ccccccccccccccccccceeeeeeeeccccceeeeecc
Q psy13776 174 -------------------------------------IN--QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGD 214 (539)
Q Consensus 174 -------------------------------------~~--~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~ 214 (539)
++ .+++...|..+++||.||+|+||+|+|||||||++|||+
T Consensus 151 ~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~wPvr~p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg 230 (578)
T TIGR01043 151 NVEGEIVEIAEEGDYTVEDTIAVVDTDGDEEIKMYQKWPVRIPRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGP 230 (578)
T ss_pred CCcceEEEeccCCCceeeeeEEEEecCCceeeeeeeecccccCCCchhcCCCCcchhccchhhhccccccCCCEEEEecC
Confidence 00 011122344569999999999999999999999999999
Q ss_pred CCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchh
Q psy13776 215 RQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRS 294 (539)
Q Consensus 215 ~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ 294 (539)
+|||||+|. .++++..+ ..+|||++||||++
T Consensus 231 ~G~GKT~l~-~~lak~~~------------------------------------------------adivVyvg~GERG~ 261 (578)
T TIGR01043 231 FGSGKTVTQ-HQLAKWSD------------------------------------------------ADIVVYIGCGERGN 261 (578)
T ss_pred CCCCHHHHH-HHHHhcCC------------------------------------------------CCEEEEEEeccChH
Confidence 999999996 45553322 13899999999999
Q ss_pred HHHHHHHHH-------hcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhc
Q psy13776 295 TVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLL 367 (539)
Q Consensus 295 ev~e~~~~l-------~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~ 367 (539)
|+++|++++ .+.+.|+|||+|+||||+|+++|++++|+|+||||||||+|+|||+++||+||||+|+||||++
T Consensus 262 E~~e~le~f~~l~dp~~g~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiAEYfRD~G~~Vllm~DS~sR~AeAlREIs~~ 341 (578)
T TIGR01043 262 EMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEAMREISGR 341 (578)
T ss_pred HHHHHHHHhHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecChhHHHHHHHHHHHh
Confidence 999999999 5578999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCchhhchhHHHHhhhcccCCCC---CccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccC
Q psy13776 368 LRRPPGREAYPGDVFYLHSRLLERSAKMSEAHG---GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGM 444 (539)
Q Consensus 368 lgepP~r~gyPg~vf~~~srLlERag~~~~~~g---~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~ 444 (539)
+||||+++|||+++|+++++||||||++++..+ +||||++++|++|+||++||||+|+++|+||||+|||+||++|
T Consensus 342 lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~~~r~GSIT~i~aVs~~ggD~sdPVt~~t~~i~dg~i~Ldr~LA~~g- 420 (578)
T TIGR01043 342 LEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDFSEPVTQNTLRIVKVFWALDADLAQRR- 420 (578)
T ss_pred cCCCCCCCCcCccHHHHHHHHHHhhccccccCCCCCCccEeEEEEEECCCCCCCccHHHHHHHHhCcEEEeCHHHHhcC-
Confidence 999999999999999999999999999875433 6999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchh-------hhHHH
Q psy13776 445 ALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAA-------QTRAM 517 (539)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~-------~~~~~ 517 (539)
||||||++.|+||+++.+ .++.|
T Consensus 421 --------------------------------------------------hyPAId~l~S~Sr~~~~~~~~~~~~v~~~~ 450 (578)
T TIGR01043 421 --------------------------------------------------HFPAINWLQSYSLYVDLVQDWWHENVDPDW 450 (578)
T ss_pred --------------------------------------------------CCCCcCcccchhhhccccccccccccCHHH
Confidence 699999999999999997 67777
Q ss_pred -HHhhhhhhHHHHHHHhhhhh
Q psy13776 518 -KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 518 -~~~~~~r~~~~~~~~~~~~~ 537 (539)
+....+|+ +|++|+|+.
T Consensus 451 ~~~~~~~~~---lL~~~~el~ 468 (578)
T TIGR01043 451 REMRDEAMD---LLQKESELQ 468 (578)
T ss_pred HHHHHHHHH---HHHHHHHHH
Confidence 66777777 788888864
No 30
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=3.2e-86 Score=704.49 Aligned_cols=347 Identities=25% Similarity=0.300 Sum_probs=303.1
Q ss_pred hcccccccCceeeecCCeeEEccchhhhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccccc
Q psy13776 67 MSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKV 146 (539)
Q Consensus 67 i~g~~~e~~G~v~~IGDg~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~V 146 (539)
+.+.++++.|+.+.+||.|.+. .++..|.|+.+++ +++.+++|+++.|++.|++|++|+++++|
T Consensus 28 v~g~~~~~~~~~~~~ge~~~i~-------------~~~~~~eVv~~~~---~~~~l~~~~~~~gi~~g~~V~~tg~~~~v 91 (433)
T PRK07594 28 VSATLLNAWLPGVFMGELCCIK-------------PGEELAEVVGING---SKALLSPFTSTIGLHCGQQVMALRRRHQV 91 (433)
T ss_pred EECCEEEEEECCcCCCCEEEEe-------------cCCeEEEEEEEcC---CeEEEEEccCCcCCCCCCEEEeCCCccEE
Confidence 4444555555555555555552 2234455555555 88999999999999999999999999999
Q ss_pred cCCCcccceeE--eeeccCCCCCcccch--hccccccccccccccccccccceeeeeeeeccccceeeeeccCCCCchHh
Q psy13776 147 DRGSINCGQLI--IGDRQTGKTALAIDT--IINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTAL 222 (539)
Q Consensus 147 pVG~~LLGRVv--lG~PiDgk~~i~~~~--~~~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtL 222 (539)
|+|++|||||+ +|+|+|++++..... +...++++..+..+++|+.||+++||.++||++|||++|||++|+|||||
T Consensus 92 ~vg~~llGrVid~~G~pld~~~~~~~~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GKSTL 171 (433)
T PRK07594 92 PVGEALLGRVIDGFGRPLDGRELPDVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL 171 (433)
T ss_pred EeChhhccCEEcccCCCcCCCCCCcccccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCccHH
Confidence 99999999999 999999987642211 11123444444444999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHH
Q psy13776 223 AIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKR 302 (539)
Q Consensus 223 a~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~ 302 (539)
+ .+|+++... ..+||++||||++|+++|++.
T Consensus 172 L-~~I~~~~~~------------------------------------------------d~~vi~~iGeRgrEv~efl~~ 202 (433)
T PRK07594 172 L-AMLCNAPDA------------------------------------------------DSNVLVLIGERGREVREFIDF 202 (433)
T ss_pred H-HHhcCCCCC------------------------------------------------CEEEEEEECCCchHHHHHHHH
Confidence 7 667655422 248999999999999999999
Q ss_pred HhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchh
Q psy13776 303 LTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF 382 (539)
Q Consensus 303 l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf 382 (539)
+.+.+.++||++|++++|+|+.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|
T Consensus 203 ~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf 282 (433)
T PRK07594 203 TLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVF 282 (433)
T ss_pred hhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEecccc
Q psy13776 383 YLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDR 462 (539)
Q Consensus 383 ~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~ 462 (539)
+.||+|+||||.. ++||||+||+|++++||++|||||+++||+||||||||+||++|
T Consensus 283 ~~l~~l~ERag~~----~~GSIT~~~tVl~~gdD~~dpi~d~~~~ilDG~IvLsr~la~~g------------------- 339 (433)
T PRK07594 283 SALPRLLERTGMG----EKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERG------------------- 339 (433)
T ss_pred HHhHHHHHhhcCC----CCcchheeeeeeecCCCCCCchHHHhhhhcceEEEEcHHHHhCC-------------------
Confidence 9999999999962 48999999999999999999999999999999999999999999
Q ss_pred cccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 463 LIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 463 ~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
+|||||++.|+||+|+++++++| +.+.++|+ +|++|+|+
T Consensus 340 --------------------------------~yPAIDvl~S~SR~~~~~~~~~h~~~a~~~r~---~la~y~e~ 379 (433)
T PRK07594 340 --------------------------------HYPAIDVLATLSRVFPVVTSHEHRQLAAILRR---CLALYQEV 379 (433)
T ss_pred --------------------------------CCCccCCcccccccchhhCCHHHHHHHHHHHH---HHHcchHH
Confidence 79999999999999999999999 66788888 88888876
No 31
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.2e-86 Score=706.39 Aligned_cols=353 Identities=23% Similarity=0.318 Sum_probs=318.9
Q ss_pred hhhcccccccCceeeecCCeeEEccchh----hhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEe
Q psy13776 65 RQMSLLLRRPPGREAYPGDVFYLHSRLL----ERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLET 140 (539)
Q Consensus 65 ~ei~g~~~e~~G~v~~IGDg~gL~~~~~----~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~t 140 (539)
.++.|+++++.|+.+++||.|.+..... +..+|||+|++ +++.+++|+++.|++.|++|+++
T Consensus 32 ~~v~g~~v~~~g~~~~iG~~c~i~~~~~~~~~~~~~eVvg~~~--------------~~~~l~~~~~~~gi~~g~~v~~~ 97 (455)
T PRK07960 32 TRATGLVLEATGLQLPLGATCVIERQNGSETHEVESEVVGFNG--------------QRLFLMPLEEVEGILPGARVYAR 97 (455)
T ss_pred EEEEEEEEEEeCCCCCCCCEEEEEeCCCccccceeeeEEEecC--------------CEEEEEECCCccCCCCCCEEEEC
Confidence 5688999999999999999999932122 26689999988 56999999999999999999999
Q ss_pred -------cccccccCCCcccceeE--eeeccCCCCCcccchhc---cccccccccccccccccccceeeeeeeeccccce
Q psy13776 141 -------ELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTII---NQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQR 208 (539)
Q Consensus 141 -------g~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~---~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR 208 (539)
+++++||||++|||||+ +|+|+||++++...... ..++++..|..+++|++||||+||.|+||++|||
T Consensus 98 ~~~~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqr 177 (455)
T PRK07960 98 NISGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQR 177 (455)
T ss_pred CcccccCCCceEEECCcccccCEECCCccccCCCCCCCCCccccccCCCcChHHhcccccchhccceeeeecccccCCcE
Confidence 99999999999999999 99999999887544322 2234444444449999999999999999999999
Q ss_pred eeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEe
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVA 288 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~ 288 (539)
++|||++|+|||||+ .+|+++... ..+|+++
T Consensus 178 i~I~G~sG~GKTTLL-~~Ia~~~~~------------------------------------------------d~iv~g~ 208 (455)
T PRK07960 178 MGLFAGSGVGKSVLL-GMMARYTQA------------------------------------------------DVIVVGL 208 (455)
T ss_pred EEEECCCCCCccHHH-HHHhCCCCC------------------------------------------------CEEEEEE
Confidence 999999999999997 677755422 2467789
Q ss_pred eccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhcc
Q psy13776 289 IGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLL 368 (539)
Q Consensus 289 IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~l 368 (539)
||+|++|+.+|++++.+.+.+++++||++++|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++
T Consensus 209 Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ 288 (455)
T PRK07960 209 IGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAI 288 (455)
T ss_pred EEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecchhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCC
Q psy13776 369 RRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNL 448 (539)
Q Consensus 369 gepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l 448 (539)
||||+++||||++|+.|++|+||||+... ++||||+||+|++|+||++|||||+++||+||||||||+||++|
T Consensus 289 ge~P~~~gypp~~f~~l~~l~ERag~~~~--~~GSIT~i~tVlv~~dD~~dpi~d~~~~i~dg~ivLsr~la~~g----- 361 (455)
T PRK07960 289 GEPPATKGYPPSVFAKLPALVERAGNGIS--GGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAG----- 361 (455)
T ss_pred CCCCccccCCcchhhhhhHHHHHHhcCCC--CCeeeeeEEEEEEcCCCCCcchHHHhhhhcceEEEECHHHHhCC-----
Confidence 99999999999999999999999998542 47999999999999999999999999999999999999999999
Q ss_pred CCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHH
Q psy13776 449 EPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWN 527 (539)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~ 527 (539)
+|||||++.|+||+++.+.++.| +.+..+|+
T Consensus 362 ----------------------------------------------~yPAID~l~S~SR~~~~~~~~~~~~~~~~~r~-- 393 (455)
T PRK07960 362 ----------------------------------------------HYPAIDIEASISRAMTALIDEQHYARVRQFKQ-- 393 (455)
T ss_pred ----------------------------------------------CCCccCcCcccCcCccccCCHHHHHHHHHHHH--
Confidence 79999999999999999999999 78888888
Q ss_pred HHHHHhhhh
Q psy13776 528 GWLSLLKQL 536 (539)
Q Consensus 528 ~~~~~~~~~ 536 (539)
+|+.|++.
T Consensus 394 -~l~~Y~~~ 401 (455)
T PRK07960 394 -LLSSFQRN 401 (455)
T ss_pred -HHHHHHHH
Confidence 78888775
No 32
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=3e-86 Score=703.21 Aligned_cols=350 Identities=26% Similarity=0.368 Sum_probs=314.8
Q ss_pred hhcccccccCceeeecCCeeEEccc-hhhhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccc
Q psy13776 66 QMSLLLRRPPGREAYPGDVFYLHSR-LLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFY 144 (539)
Q Consensus 66 ei~g~~~e~~G~v~~IGDg~gL~~~-~~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~ 144 (539)
++.|.++++.|+.+.+|+.|.+... .....+||++|.+ +++.+++|+++.|++.|++|.+|++++
T Consensus 5 ~i~G~~i~v~~~~~~ige~~~i~~~~~~~~~~eVi~~~~--------------~~v~l~~~~~t~gl~~G~~V~~tg~~~ 70 (413)
T TIGR03497 5 RVIGLTIESKGPKAKIGELCSILTKGGKPVLAEVVGFKE--------------ENVLLMPLGEVEGIGPGSLVIATGRPL 70 (413)
T ss_pred EEECCEEEEEeCCCCcCCEEEEEeCCCCeEEEEEEEEcC--------------CeEEEEEccCccCCCCCCEEEEcCCee
Confidence 4677888999999999999999421 1225678877775 679999999999999999999999999
Q ss_pred cccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCCCc
Q psy13776 145 KVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGK 219 (539)
Q Consensus 145 ~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGK 219 (539)
+||+|++|||||+ +|+|+|+++++.....++ .+|++..|..+++|+.||+++||.++||++|||++|||++|+||
T Consensus 71 ~vpvg~~lLGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GK 150 (413)
T TIGR03497 71 AIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGK 150 (413)
T ss_pred EEEcchhhcCCEEcCCCCcccCCCCCCCCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCH
Confidence 9999999999999 999999998775433222 23444444455999999999999999999999999999999999
Q ss_pred hHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHH
Q psy13776 220 TALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQI 299 (539)
Q Consensus 220 TtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~ 299 (539)
|+|+ .+|+++... ...|++++|||++|+++|
T Consensus 151 TtLl-~~i~~~~~~------------------------------------------------~~gvi~~~Ger~~ev~e~ 181 (413)
T TIGR03497 151 STLL-GMIARNAKA------------------------------------------------DINVIALIGERGREVRDF 181 (413)
T ss_pred HHHH-HHHhCCCCC------------------------------------------------CeEEEEEEccchHHHHHH
Confidence 9997 777765432 146888999999999999
Q ss_pred HHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCC
Q psy13776 300 VKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPG 379 (539)
Q Consensus 300 ~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg 379 (539)
+++..+...++||++|++|+|+||.+|+++||+|+|+||||||+|+|||+++|||||||+|+||||+++||||+++||||
T Consensus 182 ~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~ 261 (413)
T TIGR03497 182 IEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTP 261 (413)
T ss_pred HHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCc
Confidence 99977777799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEec
Q psy13776 380 DVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFG 459 (539)
Q Consensus 380 ~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~ 459 (539)
++|+.|++|+||||+ .++||||+||+|++++||++|||||+++||+||||||||+||++|
T Consensus 262 ~~f~~l~~l~ERag~----~~~GSIT~~~tVl~~gdD~~dpi~~~~~si~dg~ivLsr~la~~g---------------- 321 (413)
T TIGR03497 262 SVFSLLPKLLERSGN----SQKGSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELAAKN---------------- 321 (413)
T ss_pred hHHHHhHHHHHHhcC----CCCcceeEEEEEEccCCCCCCcchhhccccccEEEEECHHHHhCC----------------
Confidence 999999999999998 258999999999999999999999999999999999999999999
Q ss_pred ccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 460 NDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 460 ~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
+|||||++.|+||+++.++.+.| +.+.++|+ +|++|+++
T Consensus 322 -----------------------------------~~PAId~~~S~SR~~~~~~~~~~~~~a~~~r~---~l~~y~e~ 361 (413)
T TIGR03497 322 -----------------------------------HYPAIDVLASVSRVMNEIVSEEHKELAGKLRE---LLAVYKEA 361 (413)
T ss_pred -----------------------------------CCCccCCccccccCccccCCHHHHHHHHHHHH---HHHhhHHH
Confidence 79999999999999999999999 77888898 88888875
No 33
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=3e-86 Score=703.86 Aligned_cols=350 Identities=24% Similarity=0.277 Sum_probs=313.2
Q ss_pred hhcccccccCceeeecCCeeEEccc--hhhhh--cccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEec
Q psy13776 66 QMSLLLRRPPGREAYPGDVFYLHSR--LLERS--AKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETE 141 (539)
Q Consensus 66 ei~g~~~e~~G~v~~IGDg~gL~~~--~~~~~--gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg 141 (539)
++.|+++++.|+.+.+||.|.+... ..... +|||+|++ +++.+++|+++.|++.|++|..++
T Consensus 12 ~i~g~~i~~~~~~~~~ge~~~i~~~~~~~~~~~~~evv~~~~--------------~~~~l~~~~~~~gi~~g~~v~~~~ 77 (428)
T PRK08149 12 RIQGPIIEAELPDVAIGEICEIRAGWHSNEVIARAQVVGFQR--------------ERTILSLIGNAQGLSRQVVLKPTG 77 (428)
T ss_pred EEEeeEEEEEECCCCcCCEEEEeecCCCCceeeEEEEEEeeC--------------cEEEEEECCCccCCCCCCEEEEcC
Confidence 4678888999999999999999421 11233 67777766 679999999999999999999999
Q ss_pred ccccccCCCcccceeE--eeeccCCCC--Cccc--chh---ccccccccccccccccccccceeeeeeeeccccceeeee
Q psy13776 142 LFYKVDRGSINCGQLI--IGDRQTGKT--ALAI--DTI---INQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELII 212 (539)
Q Consensus 142 ~~~~VpVG~~LLGRVv--lG~PiDgk~--~i~~--~~~---~~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~ 212 (539)
++++||+|++|||||+ +|+|+|+++ +... .+. ...++++..|..+++||.||+++||.++||++|||++||
T Consensus 78 ~~~~v~vg~~llGrv~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~ 157 (428)
T PRK08149 78 KPLSVWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIF 157 (428)
T ss_pred CcCEEEeChhhcCCeeCCCCCCcCCCCCCcccccccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEE
Confidence 9999999999999999 999999986 3321 121 122334434444599999999999999999999999999
Q ss_pred ccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccc
Q psy13776 213 GDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQK 292 (539)
Q Consensus 213 g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer 292 (539)
|++|+|||||+ .+|+++... ..+||++||+|
T Consensus 158 G~sG~GKTTLl-~~i~~~~~~------------------------------------------------dv~v~g~Ig~r 188 (428)
T PRK08149 158 ASAGCGKTSLM-NMLIEHSEA------------------------------------------------DVFVIGLIGER 188 (428)
T ss_pred CCCCCChhHHH-HHHhcCCCC------------------------------------------------CeEEEEEEeeC
Confidence 99999999997 788766432 14678999999
Q ss_pred hhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCC
Q psy13776 293 RSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372 (539)
Q Consensus 293 ~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP 372 (539)
++|+++|++++.+.+.++|+++|++|+|+||.+|+++||+|+|+||||||+|||||+++|||||||+|+||||+++||||
T Consensus 189 g~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~fr~~G~~Vll~~DslTr~A~A~rEi~l~~ge~P 268 (428)
T PRK08149 189 GREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELP 268 (428)
T ss_pred CccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHHHHHcCCCEEEEccchHHHHHHHHHhHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCC
Q psy13776 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDN 452 (539)
Q Consensus 373 ~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~ 452 (539)
+++||||++|+.||+|+||||+.+ +||||+||+|++|+||++|||||+++||+||||+|||+||++|
T Consensus 269 ~~~Gyp~~vfs~l~~l~ERag~~~----~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDg~ivLsr~La~~g--------- 335 (428)
T PRK08149 269 ARRGYPASVFDSLPRLLERPGATL----AGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKG--------- 335 (428)
T ss_pred cccccCccHHHHHHHHHHhccCCC----CCCceEEEEEEecCCCCCCCchhhhheeccEEEEEcHHHHhCC---------
Confidence 999999999999999999999863 6999999999999999999999999999999999999999999
Q ss_pred cccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHH
Q psy13776 453 VGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLS 531 (539)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~ 531 (539)
+|||||++.|+||+|++++++.| +.+.++|+ +|+
T Consensus 336 ------------------------------------------~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~---~l~ 370 (428)
T PRK08149 336 ------------------------------------------HYPAIDVLKSVSRVFGQVTDPKHRQLAAAFRK---LLT 370 (428)
T ss_pred ------------------------------------------CCCcccCccccccchhhhcCHHHHHHHHHHHH---HHH
Confidence 79999999999999999999999 77888999 888
Q ss_pred Hhhhh
Q psy13776 532 LLKQL 536 (539)
Q Consensus 532 ~~~~~ 536 (539)
+|+|+
T Consensus 371 ~y~e~ 375 (428)
T PRK08149 371 RLEEL 375 (428)
T ss_pred HHHHH
Confidence 88875
No 34
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=3.2e-86 Score=704.14 Aligned_cols=349 Identities=22% Similarity=0.289 Sum_probs=310.8
Q ss_pred hhhcccccccCceeeecCCeeEEccc-hhhhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEeccc
Q psy13776 65 RQMSLLLRRPPGREAYPGDVFYLHSR-LLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELF 143 (539)
Q Consensus 65 ~ei~g~~~e~~G~v~~IGDg~gL~~~-~~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~ 143 (539)
.++.+.++++.|..+++||.|.+... .....+|||+|++ +++.+++|+++.|++.|++|..++++
T Consensus 24 ~~v~g~~i~~~g~~~~~ge~~~i~~~~~~~~~~eVv~~~~--------------~~~~l~~~~~~~gi~~G~~V~~~~~~ 89 (434)
T PRK05922 24 SRVSGNLLEAQGLSACLGELCQISLSKSPPILAEVIGFHN--------------RTTLLMSLSPIHYVALGAEVLPLRRP 89 (434)
T ss_pred EEEEccEEEEEeCCCCCCCEEEEecCCCCeeEEEEEEEeC--------------CeEEEEEccCCCCCCCCCEEEeCCCC
Confidence 34677788888888888888888421 1124567766665 77999999999999999999999999
Q ss_pred ccccCCCcccceeE--eeeccCCCCCcccchh---ccccccccccccccccccccceeeeeeeeccccceeeeeccCCCC
Q psy13776 144 YKVDRGSINCGQLI--IGDRQTGKTALAIDTI---INQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTG 218 (539)
Q Consensus 144 ~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~---~~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtG 218 (539)
++||+|++|||||+ +|+|+|+++++..+.. ...++++..|..+++||+||||+||.++||++|||++|||++|+|
T Consensus 90 ~~v~vg~~llGrv~d~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~G 169 (434)
T PRK05922 90 PSLHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSG 169 (434)
T ss_pred cEEEcChhhcCCEeCCCCCccCCCCCCCccceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCC
Confidence 99999999999999 9999999987754432 222344444444499999999999999999999999999999999
Q ss_pred chHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHH
Q psy13776 219 KTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQ 298 (539)
Q Consensus 219 KTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e 298 (539)
||||+ .+|+++... ..++|++||+|++|+.+
T Consensus 170 KSTLL-~~Ia~~~~~------------------------------------------------d~gvi~liGerg~ev~e 200 (434)
T PRK05922 170 KSSLL-STIAKGSKS------------------------------------------------TINVIALIGERGREVRE 200 (434)
T ss_pred hHHHH-HHHhccCCC------------------------------------------------CceEEEEeCCCCchHHH
Confidence 99996 788766432 36899999999999999
Q ss_pred HHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCC
Q psy13776 299 IVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYP 378 (539)
Q Consensus 299 ~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyP 378 (539)
|++.+.+...+++|++|+||||+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++|||
T Consensus 201 yl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~gyp 280 (434)
T PRK05922 201 YIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYA 280 (434)
T ss_pred HHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCCcCCcC
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEe
Q psy13776 379 GDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVF 458 (539)
Q Consensus 379 g~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~ 458 (539)
|++|+.|++|+||||+. ++||||+||+|++++| +.|||+|+++|||||||||||+|+++|
T Consensus 281 ~svfs~l~~l~ERag~~----~~GSIT~~~tVl~~~~-~~dpi~d~~rsilDGhIvLsr~la~~~--------------- 340 (434)
T PRK05922 281 ASVFHHVSEFTERAGNN----DKGSITALYAILHYPN-HPDIFTDYLKSLLDGHFFLTPQGKALA--------------- 340 (434)
T ss_pred chHHHHhHHHHHhhcCC----CCcceeEEEEEEecCC-CCCccccchhhhcCcEEEEcHHHHhCC---------------
Confidence 99999999999999983 4799999999999988 789999999999999999999997766
Q ss_pred cccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 459 GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 459 ~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
|||||++.|+||+|+++++++| +.+.++|+ +|++|+|+
T Consensus 341 -------------------------------------~PAIDvl~S~SR~~~~~~~~~~~~~a~~~r~---~l~~y~e~ 379 (434)
T PRK05922 341 -------------------------------------SPPIDILTSLSRSARQLALPHHYAAAEELRS---LLKAYHEA 379 (434)
T ss_pred -------------------------------------CCCcCCccccccCCccccCHHHHHHHHHHHH---HHHHHHHH
Confidence 9999999999999999999999 77888888 88888886
No 35
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=9.2e-86 Score=701.18 Aligned_cols=351 Identities=25% Similarity=0.355 Sum_probs=312.0
Q ss_pred hhhcccccccCceeeecCCeeEEccch--hhhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecc
Q psy13776 65 RQMSLLLRRPPGREAYPGDVFYLHSRL--LERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 142 (539)
Q Consensus 65 ~ei~g~~~e~~G~v~~IGDg~gL~~~~--~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~ 142 (539)
.++.+.++++.|..+.+||.|.+.+.. ....+||++|++ +++.+++|+++.|++.|++|++|++
T Consensus 23 ~~v~g~~v~~~g~~~~~ge~~~i~~~~~~~~~~~eVv~~~~--------------~~~~l~~~~~t~gl~~G~~V~~tg~ 88 (434)
T PRK08472 23 TKISPTIIEADGLNPSVGDIVKIESSDNGKECLGMVVVIEK--------------EQFGISPFSFIEGFKIGDKVFISKE 88 (434)
T ss_pred EEEEccEEEEEecCCCCCCEEEEecCCCCCceEEEEEEEeC--------------CeEEEEEccCCCCCCCCCEEEeCCC
Confidence 356777888888888888888884321 124566666655 7799999999999999999999999
Q ss_pred cccccCCCcccceeE--eeeccCCCCCcccchhc---cccccccccccccccccccceeeeeeeeccccceeeeeccCCC
Q psy13776 143 FYKVDRGSINCGQLI--IGDRQTGKTALAIDTII---NQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQT 217 (539)
Q Consensus 143 ~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~---~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gt 217 (539)
+++||+|++|||||+ +|+|+||++++...+.. ..++++..|..+++++.||+++||.++|+++|||.+|||++|+
T Consensus 89 ~~~v~vg~~llGRViD~~G~plD~~g~~~~~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~ 168 (434)
T PRK08472 89 GLNIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGV 168 (434)
T ss_pred ceEEEcChhhcCCEECCCCCcccCCCCCCcccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEECCCCC
Confidence 999999999999999 99999999877543322 2234444444459999999999999999999999999999999
Q ss_pred CchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHH
Q psy13776 218 GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVA 297 (539)
Q Consensus 218 GKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~ 297 (539)
|||||+ .+|+++... ..+||++||||++|++
T Consensus 169 GKStLl-~~i~~~~~~------------------------------------------------~v~vi~~iGergrev~ 199 (434)
T PRK08472 169 GKSTLM-GMIVKGCLA------------------------------------------------PIKVVALIGERGREIP 199 (434)
T ss_pred CHHHHH-HHHhhccCC------------------------------------------------CEEEEEeeCccchhHH
Confidence 999997 777755432 2689999999999999
Q ss_pred HHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCC
Q psy13776 298 QIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 377 (539)
Q Consensus 298 e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gy 377 (539)
+|++.... +.+++|++|++|+||||.+|+++||+|+++||||||+|+|||+++||+||||+|+||||+++||||+++||
T Consensus 200 e~~~~~l~-~~l~~tvvV~atsddsp~~R~~~~~~a~~iAEyFrd~G~~Vll~~DslTr~A~A~REi~l~~ge~P~~~Gy 278 (434)
T PRK08472 200 EFIEKNLG-GDLENTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGY 278 (434)
T ss_pred HHHHHHhc-CcccceEEEEECCCCCHHHhhHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCCccCc
Confidence 99987664 45999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEE
Q psy13776 378 PGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVV 457 (539)
Q Consensus 378 Pg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~ 457 (539)
||++|+.|++|+||||+. .|+||||+||+|++|+||++|||||+++||+||||||||+||++|
T Consensus 279 p~~vf~~l~~l~ERag~~---~g~GSIT~~~tVlv~gdD~~dpi~d~~~~i~Dg~ivLsr~la~~g-------------- 341 (434)
T PRK08472 279 PPSVLSLLPQLMERAGKE---EGKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFG-------------- 341 (434)
T ss_pred CchHHHHHHHHHHHhccC---CCCceeeEeEEEEecCCCCCCCchHHhhhhcceEEEEcHHHHhCC--------------
Confidence 999999999999999995 358999999999999999999999999999999999999999999
Q ss_pred ecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 458 FGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 458 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
+|||||++.|+||+|+.++++.| +.+.++|+ +|++|+|+
T Consensus 342 -------------------------------------~~PAIDvl~S~SR~~~~~~~~~~~~~a~~~r~---~l~~y~e~ 381 (434)
T PRK08472 342 -------------------------------------IYPPINILNSASRVMNDIISPEHKLAARKFKR---LYSLLKEN 381 (434)
T ss_pred -------------------------------------CCCccCCccccCccchhcCCHHHHHHHHHHHH---HHHhchhH
Confidence 79999999999999999999999 77888999 88888875
No 36
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1.5e-85 Score=711.82 Aligned_cols=352 Identities=20% Similarity=0.234 Sum_probs=301.4
Q ss_pred hcccccccCce-eeecCCeeEEccchhhhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEeccccc
Q psy13776 67 MSLLLRRPPGR-EAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYK 145 (539)
Q Consensus 67 i~g~~~e~~G~-v~~IGDg~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~ 145 (539)
++|.+.++.|. .+++||.|.+.+. ...|||++| ++ |.+.+++|+++.|+++|++|++|+++++
T Consensus 8 v~G~vV~a~g~~~~~~gE~v~v~~~--~l~gEVI~l-----------~~---d~a~iq~ye~t~Gl~~G~~V~~tg~~ls 71 (591)
T TIGR01042 8 VSGPVVVAENMAGAAMYELVRVGHD--ELVGEIIRL-----------EG---DKATIQVYEETSGLTVGDPVLRTGKPLS 71 (591)
T ss_pred EECCEEEEecCCCCCcCCEEEECCC--ceEEEEEEE-----------cC---CeEEEEEccCccCCCCCCEEEeCCCccE
Confidence 45556666665 5666666666311 134455554 44 8899999999999999999999999999
Q ss_pred ccCCCcccceeE--eeeccCCCC----C-----------cccch------------------------------------
Q psy13776 146 VDRGSINCGQLI--IGDRQTGKT----A-----------LAIDT------------------------------------ 172 (539)
Q Consensus 146 VpVG~~LLGRVv--lG~PiDgk~----~-----------i~~~~------------------------------------ 172 (539)
|++|++|||||+ +|+|+|+.+ + +..+.
T Consensus 72 v~lGpglLG~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imv 151 (591)
T TIGR01042 72 VELGPGILGNIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIML 151 (591)
T ss_pred EEcCHHHhhcccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeec
Confidence 999999999999 999999864 2 11000
Q ss_pred ---------------------------------------hcc--ccccccccccccccccccceeeeeeeeccccceeee
Q psy13776 173 ---------------------------------------IIN--QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELI 211 (539)
Q Consensus 173 ---------------------------------------~~~--~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI 211 (539)
.++ .+++...|..+++||.||+|+||+|+|||||||++|
T Consensus 152 pp~~~g~v~~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I 231 (591)
T TIGR01042 152 PPRARGTITYIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRSPRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAI 231 (591)
T ss_pred CCCCceEEEEEccCCCceeeeEEEEEeeCCceeeeccceeeecccCCChhhccCCCCccccchhhhhhccchhcCCeEEE
Confidence 001 012222333459999999999999999999999999
Q ss_pred eccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeecc
Q psy13776 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQ 291 (539)
Q Consensus 212 ~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGe 291 (539)
||++|||||+|+ .+|+++.++ | +|||++|||
T Consensus 232 ~gg~G~GKT~l~-~~lak~s~a---------------------D---------------------------viVyvg~GE 262 (591)
T TIGR01042 232 PGAFGCGKTVIS-QSLSKYSNS---------------------D---------------------------AIVYVGCGE 262 (591)
T ss_pred EcCCCcCHHHHH-HHHHhccCc---------------------C---------------------------EEEEEEEee
Confidence 999999999998 456554332 2 699999999
Q ss_pred chhHHHHHHHHH---------hcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhH
Q psy13776 292 KRSTVAQIVKRL---------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYR 362 (539)
Q Consensus 292 r~~ev~e~~~~l---------~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~R 362 (539)
|++|++||++++ ++.+.|+||++|+||||+|+++|++++|+|+||||||||+|+|||+++||+||||+|+|
T Consensus 263 RG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~ytg~tiAEYfRD~G~~Vll~~DS~tR~AeAlR 342 (591)
T TIGR01042 263 RGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALR 342 (591)
T ss_pred chHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHH
Confidence 999999999997 45688999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCC---CCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhH
Q psy13776 363 QMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEA---HGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 439 (539)
Q Consensus 363 eisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~---~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~L 439 (539)
|||+++||||+++|||+++|+.+|+||||||++.+. .++||||++++|++|+||++|||++|+++|+||||+|||+|
T Consensus 343 EIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~~~~~~~~GSIT~i~aVs~~ggD~sePVt~~t~~i~~~f~~Ldr~L 422 (591)
T TIGR01042 343 EISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKL 422 (591)
T ss_pred HHHhccCCCCCCCCcCccHHHHHHHHHHhccCCccCCCCCCCccEEEEEEEECCCCCCCCchHHHHHHHhcceeeeCHHH
Confidence 999999999999999999999999999999998642 34799999999999999999999999999999999999999
Q ss_pred HhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhh------
Q psy13776 440 FYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQ------ 513 (539)
Q Consensus 440 a~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~------ 513 (539)
|++| ||||||++.|+||++..+.
T Consensus 423 A~~g---------------------------------------------------hyPAId~l~S~Sr~~~~l~~~~~~~ 451 (591)
T TIGR01042 423 AQRK---------------------------------------------------HFPSVNWLISYSKYMRALEEFYEKF 451 (591)
T ss_pred HhCC---------------------------------------------------CCCCcCCchhhhhhhhhcccccccC
Confidence 9999 6999999999999999988
Q ss_pred hHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 514 TRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 514 ~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
++.+ +...++|+ +|++|+++.
T Consensus 452 ~~~~~~~~~~~~~---lL~~~~el~ 473 (591)
T TIGR01042 452 YPEFVPLRTKAKE---ILQEEEDLN 473 (591)
T ss_pred CHHHHHHHHHHHH---HHHHHHHHH
Confidence 7777 77888888 888888763
No 37
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.9e-85 Score=693.63 Aligned_cols=353 Identities=22% Similarity=0.297 Sum_probs=317.6
Q ss_pred hhhcccccccCceeeecCCeeEEccchh-hhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEeccc
Q psy13776 65 RQMSLLLRRPPGREAYPGDVFYLHSRLL-ERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELF 143 (539)
Q Consensus 65 ~ei~g~~~e~~G~v~~IGDg~gL~~~~~-~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~ 143 (539)
.++.|+++++.|+.+++||.|.+..... ...+|||+|++ +.+.+++|+++.|++.|++|.+|+++
T Consensus 22 ~~v~g~~~~~~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~--------------~~~~l~~~~~~~gi~~g~~v~~~~~~ 87 (434)
T PRK07196 22 VRVTGLLLESVGCRLAIGQRCRIESVDETFIEAQVVGFDR--------------DITYLMPFKHPGGVLGGARVFPSEQD 87 (434)
T ss_pred EEEEcCEEEEecCCCCcCCEEEEEeCCCceEEEEEEEecC--------------CEEEEEECCCccCCCCCCEEEECCCc
Confidence 4578999999999999999999943223 37789999988 66999999999999999999999999
Q ss_pred ccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCCC
Q psy13776 144 YKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTG 218 (539)
Q Consensus 144 ~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtG 218 (539)
++||+|++|||||+ +|+|+||++++..+...+ .++++..|..+++||+||+++||.++||++|||++|||++|+|
T Consensus 88 ~~v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~igI~G~sGaG 167 (434)
T PRK07196 88 GELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVG 167 (434)
T ss_pred cEEEcCccccCCeeCcCCCCcCCCCCCCCCceeeccCCCCChHHhcccccccccceeeccceEeEecceEEEEECCCCCC
Confidence 99999999999999 999999998775443221 2333333334499999999999999999999999999999999
Q ss_pred chHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHH
Q psy13776 219 KTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQ 298 (539)
Q Consensus 219 KTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e 298 (539)
||||+ ++|+++... ..+|+++||++++|+++
T Consensus 168 KSTLl-~~I~g~~~~------------------------------------------------dv~vig~IGerg~ev~e 198 (434)
T PRK07196 168 KSVLL-GMITRYTQA------------------------------------------------DVVVVGLIGERGREVKE 198 (434)
T ss_pred ccHHH-HHHhcccCC------------------------------------------------CeEEEEEEeeecHHHHH
Confidence 99997 777765432 14567899999999999
Q ss_pred HHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCC
Q psy13776 299 IVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYP 378 (539)
Q Consensus 299 ~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyP 378 (539)
|.++......+.|++++++++|+|+.+|+.++++++++|||||++|+|||+++||+||||+|+||||+++||||+++|||
T Consensus 199 f~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp 278 (434)
T PRK07196 199 FIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYP 278 (434)
T ss_pred HHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcC
Confidence 99886666779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEe
Q psy13776 379 GDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVF 458 (539)
Q Consensus 379 g~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~ 458 (539)
|++|+.|++|+||||+.. ++||||+||+|++|+||++|||||+++|||||||||||+||++|
T Consensus 279 ~svf~~l~~l~ERag~~~---~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr~la~~g--------------- 340 (434)
T PRK07196 279 PSAFSIIPRLAESAGNSS---GNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAG--------------- 340 (434)
T ss_pred HHHHHHhHHHHHHhhcCC---CCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcHHHHhCC---------------
Confidence 999999999999999863 57999999999999999999999999999999999999999999
Q ss_pred cccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 459 GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 459 ~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
+|||||++.|+||+|++++++.| +.+.++|+ +|++|+|+.
T Consensus 341 ------------------------------------~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~---~~a~y~e~~ 381 (434)
T PRK07196 341 ------------------------------------HYPAIDISQSISRCMSQVIGSQQAKAASLLKQ---CYADYMAIK 381 (434)
T ss_pred ------------------------------------CCCccCCccccCccchhccCHHHHHHHHHHHH---HHHHHHHHH
Confidence 79999999999999999999999 67888888 888888863
No 38
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3e-84 Score=690.52 Aligned_cols=373 Identities=22% Similarity=0.311 Sum_probs=313.5
Q ss_pred hHHHHHHHHHHHhcCc-chhhh-----hhhhcccccccCce--eeecCCeeEEccchhhhhcccccccCCeEEEEEeccc
Q psy13776 43 AAEISSILEERILGSA-PKAVA-----YRQMSLLLRRPPGR--EAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIE 114 (539)
Q Consensus 43 ~~ei~~~l~~~i~~~~-~~~~~-----~~ei~g~~~e~~G~--v~~IGDg~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~ 114 (539)
++.....+++.++.|. +.... ..++.+.++++.|+ .+.+||.|.+.....+..+|||+|+ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~v~g~~~~~~g~~~~~~iGe~~~i~~~~~~~~~eVv~~~-----------~ 71 (450)
T PRK06002 3 PDNALARLAALVERYAAPEPLVRIGGTVSEVTASHYRVRGLSRFVRLGDFVAIRADGGTHLGEVVRVD-----------P 71 (450)
T ss_pred cccHHHHHHHHHHhcccccCccceeEEEEEEeceEEEEEcCccCCCCCCEEEEECCCCcEEEEEEEEe-----------C
Confidence 4556667888888887 33222 12455666666666 5666666666321112344555554 4
Q ss_pred cCCCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccch-hcc---ccccccccccccc
Q psy13776 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDT-IIN---QKRKKRRRLLKYN 188 (539)
Q Consensus 115 ~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~-~~~---~~~~~r~ri~~~e 188 (539)
+++.+++|+++.||+.|++|.+ ++.+++|+|++|||||+ +|+|+||++++...+ ..+ .++++..+...++
T Consensus 72 ---~~~~l~~~~~~~gi~~g~~v~~-~~~~~v~vg~~llGRV~d~~G~piDg~~~~~~~~~~~~i~~~~p~~~~r~~v~~ 147 (450)
T PRK06002 72 ---DGVTVKPFEPRIEIGLGDAVFR-KGPLRIRPDPSWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVET 147 (450)
T ss_pred ---CeEEEEEccCCcCCCCCCEEEe-CCCceeecCcccccCEECCCCcCCCCCCCCCCCcceeeccCCCCCCeEeecceE
Confidence 7899999999999999999999 66889999999999999 999999998775432 112 2233333333499
Q ss_pred cccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhh
Q psy13776 189 LLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLS 268 (539)
Q Consensus 189 pl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~ 268 (539)
++.||+++||.+.||++|||++|||++|+|||||+ .+|+....
T Consensus 148 ~l~TGi~aID~L~~I~~Gqri~I~G~SGsGKTTLL-~~Ia~l~~------------------------------------ 190 (450)
T PRK06002 148 GLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLL-AMLARADA------------------------------------ 190 (450)
T ss_pred EcCCCcEEeeeeceecCCcEEEEECCCCCCHHHHH-HHHhCCCC------------------------------------
Confidence 99999999999999999999999999999999997 44442211
Q ss_pred hHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEE
Q psy13776 269 KQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHAL 348 (539)
Q Consensus 269 ~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVL 348 (539)
...++|+++|||++|+.+|.+...... ++|+++|++++|+||.+|+++||+|||+||||||+|+|||
T Consensus 191 ------------pd~gvv~liGergrev~e~~~~~l~~~-r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfrd~G~~Vl 257 (450)
T PRK06002 191 ------------FDTVVIALVGERGREVREFLEDTLADN-LKKAVAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVL 257 (450)
T ss_pred ------------CCeeeeeecccCCccHHHHhHHHHHHh-hCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 125789999999999999998766543 8899999999999999999999999999999999999999
Q ss_pred EEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccc
Q psy13776 349 IIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISI 428 (539)
Q Consensus 349 li~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~si 428 (539)
+++||+||||+|+||||+++||||+++||||++|+.||+|+||||+.. .++||||+||||++|+||++|||||+++||
T Consensus 258 l~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~--~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i 335 (450)
T PRK06002 258 LIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGA--EGGGSITGIFSVLVDGDDHNDPVADSIRGT 335 (450)
T ss_pred EeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCC--CCCeeeeEEEEEEecCCCCCCccHHHHHhh
Confidence 999999999999999999999999999999999999999999999853 358999999999999999999999999999
Q ss_pred cceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccccccccccc
Q psy13776 429 TDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRV 508 (539)
Q Consensus 429 tDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~ 508 (539)
+||||||||+||++| +|||||++.|+||+
T Consensus 336 ~Dg~ivLsr~la~~g---------------------------------------------------~~PAIDv~~S~SR~ 364 (450)
T PRK06002 336 LDGHIVLDRAIAEQG---------------------------------------------------RYPAVDPLASISRL 364 (450)
T ss_pred cceEEEEcHHHHhCC---------------------------------------------------CCCccCCccccCcc
Confidence 999999999999999 79999999999999
Q ss_pred CchhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 509 GSAAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 509 ~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
|+.+++++| +.+.++|+ +|++|+|+
T Consensus 365 ~~~~~~~~~~~~a~~~r~---~la~y~e~ 390 (450)
T PRK06002 365 ARHAWTPEQRKLVSRLKS---MIARFEET 390 (450)
T ss_pred cccccCHHHHHHHHHHHH---HHHHHHHH
Confidence 999999999 66788888 77888775
No 39
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=8.1e-84 Score=701.44 Aligned_cols=338 Identities=21% Similarity=0.261 Sum_probs=296.8
Q ss_pred hhccccccc-CCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCc--
Q psy13776 94 RSAKMSEAH-GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTAL-- 168 (539)
Q Consensus 94 ~~gEVV~f~-~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i-- 168 (539)
..+|+|.+. ++..|.|+.++. |.+.+++|+++.|+++|++|++||++++|++|++|||||+ +|+|+|+.+..
T Consensus 24 ~~~E~v~v~~~~l~gEVi~~~~---d~a~iqv~e~T~Gl~~G~~V~~tg~plsv~lGpglLGrv~Dg~grPLd~~~~~~~ 100 (586)
T PRK04192 24 RMYEVVRVGEEGLIGEIIRIEG---DKATIQVYEETSGIKPGEPVEFTGEPLSVELGPGLLGSIFDGIQRPLDELAEKSG 100 (586)
T ss_pred CccCEEEECCCcEEEEEEEEeC---CceEEEEecCCcCCCCCCEEEeCCCccEEEcCHHhcCCeecCCCCcccccchhcc
Confidence 556666553 246677777777 9999999999999999999999999999999999999999 99999987521
Q ss_pred ------------ccc--------------------------h--------------------------------------
Q psy13776 169 ------------AID--------------------------T-------------------------------------- 172 (539)
Q Consensus 169 ------------~~~--------------------------~-------------------------------------- 172 (539)
..+ .
T Consensus 101 ~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i~~~G~ytv~~~i~~~~~~ 180 (586)
T PRK04192 101 DFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEIVSEGDYTVDDTIAVLEDE 180 (586)
T ss_pred cccccCCCCCCCCcccccceecccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEEccCCCceeeeEEEEEEcc
Confidence 100 0
Q ss_pred -----------hcc--ccccccccccccccccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhcccccc
Q psy13776 173 -----------IIN--QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQ 239 (539)
Q Consensus 173 -----------~~~--~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~ 239 (539)
.++ .+++...|..+++||.||+|+||+|+||+||||++|||++|+|||+|+ .+|+++.+.
T Consensus 181 ~G~~~~~~~~~~wPvr~~~p~~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G~GKTvl~-~~iak~a~a------ 253 (586)
T PRK04192 181 DGEGVELTMMQKWPVRRPRPYKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQ-HQLAKWADA------ 253 (586)
T ss_pred CCceeeeccccccccccCCcccccCCCCCccccCchhhhcccccccCCeEEEecCCCCCHHHHH-HHHHhcCCC------
Confidence 001 011113455679999999999999999999999999999999999998 567665432
Q ss_pred ccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhc-------CCCCceE
Q psy13776 240 YLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTD-------SGAMGYT 312 (539)
Q Consensus 240 ~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~-------~~~~~~t 312 (539)
.+|||++||||++|++||++++.+ .+.|+||
T Consensus 254 ------------------------------------------divVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RT 291 (586)
T PRK04192 254 ------------------------------------------DIVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERT 291 (586)
T ss_pred ------------------------------------------CEEEEEEcCcChHHHHHHHHHHHhhcccccccccceeE
Confidence 379999999999999999999764 6799999
Q ss_pred EEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhh
Q psy13776 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERS 392 (539)
Q Consensus 313 vvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERa 392 (539)
++|+||||+|+++|++++|+|+|+||||||+|+|||+++||+||||+|+||||++++|||+++|||+++|+.+|+|||||
T Consensus 292 vlVanTSn~Pv~aR~~s~ytgiTiAEYfRd~G~~Vllm~DStSR~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERA 371 (586)
T PRK04192 292 VLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERA 371 (586)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCC-CccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceee
Q psy13776 393 AKMSEAHG-GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVK 471 (539)
Q Consensus 393 g~~~~~~g-~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 471 (539)
|++++..+ +||||++++|++|+||++||||+++++|+||||+|||+||++|
T Consensus 372 G~v~~~~~~~GSIT~i~aVs~pggD~sePVt~~t~~i~dg~i~Ldr~LA~~g---------------------------- 423 (586)
T PRK04192 372 GRVKTLGGEEGSVTIIGAVSPPGGDFSEPVTQNTLRIVKVFWALDAELADRR---------------------------- 423 (586)
T ss_pred cccccCCCCCcceEEEEEEECCCCCCCcchHHHHHHHhCceEEEcHHHHhCC----------------------------
Confidence 99875333 7999999999999999999999999999999999999999999
Q ss_pred eccceeecccccccchhhccccCCCccccccccccccCchhhh-------HHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 472 RTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQT-------RAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 472 ~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~-------~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
||||||++.|+||.++..+. +.| +...++|+ +|++|+++.
T Consensus 424 -----------------------hyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~---~L~~~~el~ 471 (586)
T PRK04192 424 -----------------------HFPAINWLTSYSLYLDQVAPWWEENVDPDWRELRDEAMD---LLQREAELQ 471 (586)
T ss_pred -----------------------cCCccCCccchhhhhhcccchhhcccCHHHHHHHHHHHH---HHHHHHHHH
Confidence 69999999999999999876 666 77777777 888888763
No 40
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=4.4e-84 Score=652.93 Aligned_cols=267 Identities=22% Similarity=0.348 Sum_probs=244.0
Q ss_pred cccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCC
Q psy13776 143 FYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQT 217 (539)
Q Consensus 143 ~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gt 217 (539)
+++||||++|||||+ +|+|+||++++...+.++ .++++..|..+++||+||||+||+|+|||||||++|||++|+
T Consensus 1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence 468999999999999 999999998775443322 234555555669999999999999999999999999999999
Q ss_pred CchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHH
Q psy13776 218 GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVA 297 (539)
Q Consensus 218 GKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~ 297 (539)
|||+|+.+.+.|++.. ...+|||++||||++||+
T Consensus 81 GKTtLa~~i~~~i~~~----------------------------------------------~~~~~V~~~iGer~~Ev~ 114 (274)
T cd01133 81 GKTVLIMELINNIAKA----------------------------------------------HGGYSVFAGVGERTREGN 114 (274)
T ss_pred ChhHHHHHHHHHHHhc----------------------------------------------CCCEEEEEEeccCcHHHH
Confidence 9999995544444321 023799999999999999
Q ss_pred HHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHC-CCcEEEEecChhHHHHHhHHhhhccCCCCCCCC
Q psy13776 298 QIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREA 376 (539)
Q Consensus 298 e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~-GkdVLli~DslTr~A~A~Reisl~lgepP~r~g 376 (539)
+|++++++.++|+||++|++|+|+||.+|+++||+|+++||||||+ |+|||+++||+||||+|+||||+++||||+++|
T Consensus 115 e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis~~~ge~p~~~g 194 (274)
T cd01133 115 DLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVG 194 (274)
T ss_pred HHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHHHHcCCCCCCcC
Confidence 9999999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccE
Q psy13776 377 YPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVV 456 (539)
Q Consensus 377 yPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~ 456 (539)
|||++|+.|++|+||||+ .++||||+||+|++++||++|||||++++|+||||+|||+||++|
T Consensus 195 yp~~~f~~~~~l~ERag~----~~~GSiT~~~~v~~~~dD~~dpi~~~~~~i~dg~ivLsr~la~~g------------- 257 (274)
T cd01133 195 YQPTLATEMGALQERITS----TKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRAIAELG------------- 257 (274)
T ss_pred cCccHHHHHHHHHHHhcC----CCCcccceEEEEEecCCCCCCchHHHHHHhcceEEEEcHHHHhCC-------------
Confidence 999999999999999997 358999999999999999999999999999999999999999999
Q ss_pred EecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCc
Q psy13776 457 VFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGS 510 (539)
Q Consensus 457 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~ 510 (539)
+|||||++.|+||++.
T Consensus 258 --------------------------------------~~PAId~~~S~SR~~~ 273 (274)
T cd01133 258 --------------------------------------IYPAVDPLDSTSRILD 273 (274)
T ss_pred --------------------------------------CCCCcCCccchhcccC
Confidence 7999999999999985
No 41
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=4.7e-83 Score=681.08 Aligned_cols=350 Identities=27% Similarity=0.353 Sum_probs=309.6
Q ss_pred hhcccccccCceeeecCCeeEEccc-hhhhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccc
Q psy13776 66 QMSLLLRRPPGREAYPGDVFYLHSR-LLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFY 144 (539)
Q Consensus 66 ei~g~~~e~~G~v~~IGDg~gL~~~-~~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~ 144 (539)
+|.+.++++.++.+++||.|.+.+. .....+||++|+ + |++.+++|+++.|++.|++|++||+++
T Consensus 11 ~v~g~~v~v~~~~~~~ge~~~i~~~~~~~~~~eVi~~~-----------~---~~~~l~~~~~~~gl~~G~~V~~tg~~~ 76 (422)
T TIGR02546 11 EVSGTLLKAVLPGARVGELCLIRRRDPSQLLAEVVGFT-----------G---DEALLSPLGELHGISPGSEVIPTGRPL 76 (422)
T ss_pred EEECcEEEEEECCCCCCCEEEEeeCCCCeEEEEEEEEc-----------C---CcEEEEEccCccCCCCCCEEEECCCCc
Confidence 3455666666666777777777421 111444555554 4 789999999999999999999999999
Q ss_pred cccCCCcccceeE--eeeccCCCCCcccch--h---ccccccccccccccccccccceeeeeeeeccccceeeeeccCCC
Q psy13776 145 KVDRGSINCGQLI--IGDRQTGKTALAIDT--I---INQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQT 217 (539)
Q Consensus 145 ~VpVG~~LLGRVv--lG~PiDgk~~i~~~~--~---~~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gt 217 (539)
+||+|++|||||+ +|+|+|+++++.... . ...++++..|..+++|+.||+++||.++|+++|||++|+|++|+
T Consensus 77 ~v~vg~~lLGrViD~~G~plD~~~~~~~~~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~ 156 (422)
T TIGR02546 77 SIRVGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGV 156 (422)
T ss_pred eEEeChhhccCEeCCCCCcccCCCCCCCCCceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCC
Confidence 9999999999999 999999998775442 1 12334444444559999999999999999999999999999999
Q ss_pred CchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHH
Q psy13776 218 GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVA 297 (539)
Q Consensus 218 GKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~ 297 (539)
|||+|+ .+|+++... ..++|++||+|++|++
T Consensus 157 GKStLl-~~I~~~~~~------------------------------------------------~~~vi~~iG~~~~ev~ 187 (422)
T TIGR02546 157 GKSTLL-GMIARGASA------------------------------------------------DVNVIALIGERGREVR 187 (422)
T ss_pred ChHHHH-HHHhCCCCC------------------------------------------------CEEEEEEEccCCcCHH
Confidence 999996 777765432 2689999999999999
Q ss_pred HHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCC
Q psy13776 298 QIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 377 (539)
Q Consensus 298 e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gy 377 (539)
+|++...+.+++++|++|++++|+|+.+|+++||+|+++|||||++|+|||+++||+||||+|+||||+++||||+++||
T Consensus 188 ~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~f~~~g~~Vl~~~Dsltr~a~A~rei~l~~ge~P~~~gy 267 (422)
T TIGR02546 188 EFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGY 267 (422)
T ss_pred HHHHHHhccccccceEEEeccccCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCchHHHHHHHHHHHhcCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEE
Q psy13776 378 PGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVV 457 (539)
Q Consensus 378 Pg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~ 457 (539)
||++|+.||+|+||||+ .++||||+||+|++++||++|||||+++||+||||+|||+||++|
T Consensus 268 p~~~f~~l~~l~ERag~----~~~GSIT~~~tv~~~~dd~~~pi~~~~~~i~dg~i~Lsr~la~~g-------------- 329 (422)
T TIGR02546 268 PPSVFSSLPRLLERAGN----GEKGSITALYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAERN-------------- 329 (422)
T ss_pred ChhHHHHhHHHHHHhcC----CCCCceeEEEEEeccCCCCCCCchhhhhccccEEEEEcHHHHhCC--------------
Confidence 99999999999999998 358999999999999999999999999999999999999999999
Q ss_pred ecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 458 FGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 458 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
+|||||++.|+||++++++++.| +.+.++|+ +|++|+++
T Consensus 330 -------------------------------------~yPAId~~~S~SR~~~~~~~~~~~~~a~~~~~---~l~~y~e~ 369 (422)
T TIGR02546 330 -------------------------------------HYPAIDVLASLSRVMSQVVSTEHRRAAGKLRR---LLATYKEV 369 (422)
T ss_pred -------------------------------------CCCccCCccccccchhhhCCHHHHHHHHHHHH---HHHhhHHH
Confidence 79999999999999999999999 77888888 88888875
No 42
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=1e-80 Score=665.48 Aligned_cols=350 Identities=27% Similarity=0.374 Sum_probs=304.8
Q ss_pred hcccccccCceeeecCCeeEEccchhhhhcccccccCC-eEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEeccccc
Q psy13776 67 MSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGG-GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYK 145 (539)
Q Consensus 67 i~g~~~e~~G~v~~IGDg~gL~~~~~~~~gEVV~f~~g-~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~ 145 (539)
|.|.++++.|..+.+||.|.+.... .++ ..|.|+.++. +.+.+++|+++.|++.|++|++||++++
T Consensus 30 i~G~~v~~~~~~~~~ge~~~i~~~~----------~~~~~~~eVi~~~~---~~v~l~~~~~t~gl~~G~~V~~tg~~~~ 96 (440)
T TIGR01026 30 VKGLLIEAVGPQASVGDLCLIERRG----------SEGRLVAEVVGFNG---EFVFLMPYEEVEGVRPGSKVLATGEGLS 96 (440)
T ss_pred EEeeEEEEEcCCCCcCCEEEEeecC----------CCCcEEEEEEEecC---CEEEEEEccCCcCCCCCCEEEeCCCccE
Confidence 4455555555555555555552110 011 4455555555 8899999999999999999999999999
Q ss_pred ccCCCcccceeE--eeeccCCCC-Ccccch---hccccccccccccccccccccceeeeeeeeccccceeeeeccCCCCc
Q psy13776 146 VDRGSINCGQLI--IGDRQTGKT-ALAIDT---IINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGK 219 (539)
Q Consensus 146 VpVG~~LLGRVv--lG~PiDgk~-~i~~~~---~~~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGK 219 (539)
||+|++|||||+ +|+|+||++ ++.... +...++++..|..+++|+.||+++||.++||++|||++|||++|+||
T Consensus 97 v~vg~~llGRVid~~G~plD~~~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GK 176 (440)
T TIGR01026 97 IKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGK 176 (440)
T ss_pred EEcChhhhhceecCCCcccCCCCCCCCCccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEEECCCCCCH
Confidence 999999999999 999999987 554322 11223444444445999999999999999999999999999999999
Q ss_pred hHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHH
Q psy13776 220 TALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQI 299 (539)
Q Consensus 220 TtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~ 299 (539)
|+|+ .+|+++... ...+|++||+|++|+.+|
T Consensus 177 StLl-~~I~~~~~~------------------------------------------------~~~vi~~iG~r~~ev~~~ 207 (440)
T TIGR01026 177 STLL-GMIARNTEA------------------------------------------------DVNVIALIGERGREVREF 207 (440)
T ss_pred HHHH-HHHhCCCCC------------------------------------------------CEEEEEEEeecchHHHHH
Confidence 9997 777755421 246889999999999999
Q ss_pred HHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCC
Q psy13776 300 VKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPG 379 (539)
Q Consensus 300 ~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg 379 (539)
++++.+.+.|+||++|++++|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||
T Consensus 208 ~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp 287 (440)
T TIGR01026 208 IEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTP 287 (440)
T ss_pred HHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEec
Q psy13776 380 DVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFG 459 (539)
Q Consensus 380 ~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~ 459 (539)
++|+.+++|+|||+. .++||||+||+|+++++|++|||+|++++|+||||+|||+||++|
T Consensus 288 ~~~~~l~~l~ERag~----~~~GSIT~i~tVl~~~~d~~dpi~d~~~~i~dG~ivLsr~la~~~---------------- 347 (440)
T TIGR01026 288 SVFSTLPRLLERAGA----SGKGSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRG---------------- 347 (440)
T ss_pred hHHHHHHHHHHHhcc----CCCCeeeEEEEEEccCcCCCcchhhhhccccceEEEEecchhhCC----------------
Confidence 999999999999995 358999999999999999999999999999999999999999999
Q ss_pred ccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 460 NDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 460 ~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
+|||||++.|+||+++.++++.| +.+.++|+ +|++|+++
T Consensus 348 -----------------------------------~~PAId~~~S~SR~~~~~~~~~~~~~a~~~r~---~l~~y~e~ 387 (440)
T TIGR01026 348 -----------------------------------HYPAIDVLASISRLMTAIVSEEHRRAARKFRE---LLSKYKDN 387 (440)
T ss_pred -----------------------------------ccCccCCCcccccCccccCCHHHHHHHHHHHH---HHHhhHHH
Confidence 79999999999999999999999 77888898 88888876
No 43
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=5.4e-81 Score=664.34 Aligned_cols=346 Identities=22% Similarity=0.271 Sum_probs=309.0
Q ss_pred hhhcccccccCceeeecCCeeEEccchhhhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccc
Q psy13776 65 RQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFY 144 (539)
Q Consensus 65 ~ei~g~~~e~~G~v~~IGDg~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~ 144 (539)
.++.|+++++.|+.+.+||.|.+. .....+||++|++ +++.+++|+++.|++.|+.|++|++++
T Consensus 26 ~~~~g~~~~~~g~~~~ige~~~i~--~~~~~~eV~~~~~--------------~~~~~~~~~~~~gi~~g~~v~~~~~~~ 89 (432)
T PRK06793 26 HSVQEQFFVAKGPKAKIGDVCFVG--EHNVLCEVIAIEK--------------ENNMLLPFEQTEKVCYGDSVTLIAEDV 89 (432)
T ss_pred EEEEEEEEEEEcCCCCcCCEEEEC--CCCEEEEEEEecC--------------CcEEEEEccCccCCCCCCEEEECCCcc
Confidence 467899999999999999999993 1226677777776 669999999999999999999999999
Q ss_pred cccCCCcccceeE--eeeccCCCCCcccchhc---ccc--ccccccccccccccccceeeeeeeeccccceeeeeccCCC
Q psy13776 145 KVDRGSINCGQLI--IGDRQTGKTALAIDTII---NQK--RKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQT 217 (539)
Q Consensus 145 ~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~---~~~--~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gt 217 (539)
+||||++|||||+ +|+|+||++++...+.. ..+ +..|.++ ++|+.||+++||.++|+++|||++|||++|+
T Consensus 90 ~v~vg~~~lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i--~~~l~TGiraID~ll~I~~Gqri~I~G~sG~ 167 (432)
T PRK06793 90 VIPRGNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEI--TDVFETGIKSIDSMLTIGIGQKIGIFAGSGV 167 (432)
T ss_pred EEEcCHhhccCEECcCCccCCCCCCCCCcccccccCCCCCchheech--hhccCCCCEEEeccceecCCcEEEEECCCCC
Confidence 9999999999999 99999998765433221 122 3334444 8999999999999999999999999999999
Q ss_pred CchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHH
Q psy13776 218 GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVA 297 (539)
Q Consensus 218 GKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~ 297 (539)
|||+|+ .+|+++... ...++++||||++||+
T Consensus 168 GKTtLl-~~Ia~~~~~------------------------------------------------~~gvI~~iGerg~ev~ 198 (432)
T PRK06793 168 GKSTLL-GMIAKNAKA------------------------------------------------DINVISLVGERGREVK 198 (432)
T ss_pred ChHHHH-HHHhccCCC------------------------------------------------CeEEEEeCCCCcccHH
Confidence 999997 666644321 1346789999999999
Q ss_pred HHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCC
Q psy13776 298 QIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 377 (539)
Q Consensus 298 e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gy 377 (539)
+|++...+...|+||++|++|+|+|+.+|+++|++|+++||||||+|+|||+++||+||||+|+|||+++++|||+. ||
T Consensus 199 e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~-G~ 277 (432)
T PRK06793 199 DFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIG-GK 277 (432)
T ss_pred HHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCC-Ce
Confidence 99986666566999999999999999999999999999999999999999999999999999999999999999996 99
Q ss_pred CCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEE
Q psy13776 378 PGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVV 457 (539)
Q Consensus 378 Pg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~ 457 (539)
|+++|+.|++|+||||+. ++||||++|+|++|+||++|||||+++|||||||||||+||++|
T Consensus 278 ~~~~~s~l~~L~ERag~~----~~GSiT~~~tvlv~~dD~~dpI~d~~~si~DG~ivLsr~la~~g-------------- 339 (432)
T PRK06793 278 TLLMESYMKKLLERSGKT----QKGSITGIYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLS-------------- 339 (432)
T ss_pred eeeeeccchhHHHHhccC----CCcceEEEEEEEecCCCCCCcchHHhhhhcceEEEEcHHHHhCC--------------
Confidence 999999999999999985 37999999999999999999999999999999999999999999
Q ss_pred ecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 458 FGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 458 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
+|||||++.|+||+|+.++++.| +.+..+|+ +|+.|+++
T Consensus 340 -------------------------------------~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~---~la~y~e~ 379 (432)
T PRK06793 340 -------------------------------------HYPAISVLDSVSRIMEEIVSPNHWQLANEMRK---ILSIYKEN 379 (432)
T ss_pred -------------------------------------CCCccCCCcccCcCccccCCHHHHHHHHHHHH---HHHhChHH
Confidence 79999999999999999999999 77888898 88888875
No 44
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.9e-78 Score=646.22 Aligned_cols=351 Identities=27% Similarity=0.381 Sum_probs=313.1
Q ss_pred hhhcccccccCceeeecCCeeEEccc-hh--hhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEec
Q psy13776 65 RQMSLLLRRPPGREAYPGDVFYLHSR-LL--ERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETE 141 (539)
Q Consensus 65 ~ei~g~~~e~~G~v~~IGDg~gL~~~-~~--~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg 141 (539)
.++.|.++++.|+.+++||.|.+... .. +..+||++|.+ +++.+++|+++.|++.|++|++||
T Consensus 23 ~~i~G~~i~~~~~~~~ige~~~i~~~~~~~~~~~~EVi~~~~--------------~~~~l~~~~~~~gl~~g~~V~~tg 88 (438)
T PRK07721 23 SRVIGLMIESKGPESSIGDVCYIHTKGGGDKAIKAEVVGFKD--------------EHVLLMPYTEVAEIAPGCLVEATG 88 (438)
T ss_pred EEEECcEEEEEECCCCchheEEEEecCCCCceEEEEEEEEcC--------------CEEEEEEccCccCCCCCCEEEECC
Confidence 45788899999999999999999422 11 26788988887 669999999999999999999999
Q ss_pred ccccccCCCcccceeE--eeeccCCCCCcccch---hccccccccccccccccccccceeeeeeeeccccceeeeeccCC
Q psy13776 142 LFYKVDRGSINCGQLI--IGDRQTGKTALAIDT---IINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQ 216 (539)
Q Consensus 142 ~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~---~~~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~g 216 (539)
++++||||++|||||+ +|+|+||++...... +...++++..|..+++||.||+++||.++|+++||+++|+|++|
T Consensus 89 ~~~~v~vg~~llGRv~d~~G~plD~~~~~~~~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG 168 (438)
T PRK07721 89 KPLEVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSG 168 (438)
T ss_pred CccEEEechhhcCCEECcCCCccCCCCCCCccccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCCC
Confidence 9999999999999999 999999987433322 11223444444455999999999999999999999999999999
Q ss_pred CCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHH
Q psy13776 217 TGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTV 296 (539)
Q Consensus 217 tGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev 296 (539)
+|||+|+ .+|+++... ...++.++|||++|+
T Consensus 169 ~GKStLl-~~I~~~~~~------------------------------------------------~~gvI~~~Gerg~ev 199 (438)
T PRK07721 169 VGKSTLM-GMIARNTSA------------------------------------------------DLNVIALIGERGREV 199 (438)
T ss_pred CCHHHHH-HHHhcccCC------------------------------------------------CeEEEEEEecCCccH
Confidence 9999997 677654321 136788999999999
Q ss_pred HHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCC
Q psy13776 297 AQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREA 376 (539)
Q Consensus 297 ~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~g 376 (539)
++|+++..+...++|+++|++|+|+||.+|+++||+|||+||||||+|+|||+++||+||||+||||||+++||||+++|
T Consensus 200 ~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G 279 (438)
T PRK07721 200 REFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKG 279 (438)
T ss_pred HHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCcccc
Confidence 99999977777799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccE
Q psy13776 377 YPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVV 456 (539)
Q Consensus 377 yPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~ 456 (539)
|||++|+.+++|+||+++. ++||||+|+||+++++|+++||+|++++|+||||+||++|+++|
T Consensus 280 ~dp~~~~~l~~ller~~~~----~~GsIT~~~TVlv~~hdm~e~i~d~v~~i~dG~Ivls~~la~~g------------- 342 (438)
T PRK07721 280 YTPSVFAILPKLLERTGTN----ASGSITAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKG------------- 342 (438)
T ss_pred CCHHHHHHHHHHHHHhcCC----CCCCeeeEEEEEEECCCCCchhhhhEEEecCEEEEEeccHHHCC-------------
Confidence 9999999999999999862 47999999999999999999999999999999999999999999
Q ss_pred EecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhh
Q psy13776 457 VFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQ 535 (539)
Q Consensus 457 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~ 535 (539)
+|||||++.|+||+++.++++.| +.+.++|+ +|++|++
T Consensus 343 --------------------------------------~~PAIdv~~S~SR~~~~~~~~~~~~~a~~~r~---~l~~y~e 381 (438)
T PRK07721 343 --------------------------------------QYPAINVLKSVSRVMNHIVSPEHKEAANRFRE---LLSTYQN 381 (438)
T ss_pred --------------------------------------CCCccCCcccccccccccCCHHHHHHHHHHHH---HHHHhHH
Confidence 79999999999999999999999 67788899 8888887
Q ss_pred h
Q psy13776 536 L 536 (539)
Q Consensus 536 ~ 536 (539)
+
T Consensus 382 ~ 382 (438)
T PRK07721 382 S 382 (438)
T ss_pred H
Confidence 5
No 45
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=9.1e-78 Score=641.17 Aligned_cols=352 Identities=24% Similarity=0.343 Sum_probs=312.4
Q ss_pred hhhcccccccCceeeecCCeeEEccchh-hhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEeccc
Q psy13776 65 RQMSLLLRRPPGREAYPGDVFYLHSRLL-ERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELF 143 (539)
Q Consensus 65 ~ei~g~~~e~~G~v~~IGDg~gL~~~~~-~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~ 143 (539)
.++.|+++++.|+.+++||.|.+..... ...+||++|++ +.+.+++|+++.|++.|++|.+++++
T Consensus 28 ~~i~g~~~~~~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~--------------~~~~l~~~~~~~gi~~g~~V~~~g~~ 93 (442)
T PRK06315 28 TEVVGMLIKAVVPDVRVGEVCLVKRHGMEPLVTEVVGFTQ--------------NFVFLSPLGELTGVSPSSEVIPTGLP 93 (442)
T ss_pred EEEECCEEEEEECCcccCCEEEEecCCCCEEEEEEEEEcC--------------CeEEEEEccCCcCCCCCCEEEeCCCc
Confidence 5688999999999999999999943211 25678888776 67999999999999999999999999
Q ss_pred ccccCCCcccceeE--eeeccCC--CCCcc-cch---hccccccccccccccccccccceeeeeeeeccccceeeeeccC
Q psy13776 144 YKVDRGSINCGQLI--IGDRQTG--KTALA-IDT---IINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDR 215 (539)
Q Consensus 144 ~~VpVG~~LLGRVv--lG~PiDg--k~~i~-~~~---~~~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~ 215 (539)
++||||++|||||+ +|+|+|+ ++++. .++ +...++++..|..+++||+||||+||.++||++|||++|||++
T Consensus 94 ~~v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~s 173 (442)
T PRK06315 94 LHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGA 173 (442)
T ss_pred cEEEecccccCCEEeccCcccccccCCCcccccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEECCC
Confidence 99999999999999 9999998 76654 222 2223344444545599999999999999999999999999999
Q ss_pred CCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhH
Q psy13776 216 QTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRST 295 (539)
Q Consensus 216 gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~e 295 (539)
|+|||+|+ .+|+++... ....|+++||||++|
T Consensus 174 G~GKStLl-~~I~~~~~~-----------------------------------------------~~~~vi~liGerg~e 205 (442)
T PRK06315 174 GVGKSSLL-GMIARNAEE-----------------------------------------------ADVNVIALIGERGRE 205 (442)
T ss_pred CCCcchHH-HHhhccccc-----------------------------------------------CCceEEEEECCCchH
Confidence 99999998 667643311 012577999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCC
Q psy13776 296 VAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGRE 375 (539)
Q Consensus 296 v~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~ 375 (539)
+.+|.++......++++++|++||+++|..|+.++++|+++|||||++|++||+++||+||||+|+||+++++||||+++
T Consensus 206 v~~~~~~~l~~~g~~~svvvvats~q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~ 285 (442)
T PRK06315 206 VREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARA 285 (442)
T ss_pred HHHHHHHHHHhcCCceEEEEEeCCCCCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCcccc
Confidence 99999886555669999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCccc
Q psy13776 376 AYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGV 455 (539)
Q Consensus 376 gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~ 455 (539)
+|||++|+.||+|+||||+. ++||||+||+|++++||++|||||+++||+||||||||+||++|
T Consensus 286 gypP~~fS~l~~llERag~~----~~GSITai~tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~la~~g------------ 349 (442)
T PRK06315 286 GYTPSVFSTLPKLLERSGAS----DKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAY------------ 349 (442)
T ss_pred CCCCchhhHhHHHHHHhcCC----CCcceeeeEEEEecCCCCCcccHHHhhhhcceEEEEeccHHHcC------------
Confidence 99999999999999999984 48999999999999999999999999999999999999999999
Q ss_pred EEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhh
Q psy13776 456 VVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLK 534 (539)
Q Consensus 456 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~ 534 (539)
+|||||++.|+||+|+++++++| +.+.++|+ +|++|+
T Consensus 350 ---------------------------------------~~Paidv~~S~SR~~~~~~~~~~~~~a~~~r~---~l~~y~ 387 (442)
T PRK06315 350 ---------------------------------------HYPAIDVLASISRLLTAIVPEEQRRIIGKARE---VLAKYK 387 (442)
T ss_pred ---------------------------------------CCCCccchhhhcccchhcCCHHHHHHHHHHHH---HHHhhh
Confidence 79999999999999999999999 66788888 888888
Q ss_pred hh
Q psy13776 535 QL 536 (539)
Q Consensus 535 ~~ 536 (539)
|+
T Consensus 388 e~ 389 (442)
T PRK06315 388 AN 389 (442)
T ss_pred hh
Confidence 75
No 46
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=2.1e-76 Score=610.62 Aligned_cols=288 Identities=30% Similarity=0.448 Sum_probs=263.6
Q ss_pred cccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCC
Q psy13776 143 FYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQT 217 (539)
Q Consensus 143 ~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gt 217 (539)
+++||||++|||||+ +|+||||++++...+..+ .++++..|..+++|+.||+++||.++|+++|||++|||++|+
T Consensus 1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence 468999999999999 999999998764433222 234444555559999999999999999999999999999999
Q ss_pred CchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHH
Q psy13776 218 GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVA 297 (539)
Q Consensus 218 GKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~ 297 (539)
|||+|+ .+|+++... ..++|++||||++|+.
T Consensus 81 GKTtLl-~~Ia~~~~~------------------------------------------------~~~vi~~iGer~~ev~ 111 (326)
T cd01136 81 GKSTLL-GMIARGTTA------------------------------------------------DVNVIALIGERGREVR 111 (326)
T ss_pred ChHHHH-HHHhCCCCC------------------------------------------------CEEEEEEEecCCccHH
Confidence 999996 777755421 2589999999999999
Q ss_pred HHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCC
Q psy13776 298 QIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 377 (539)
Q Consensus 298 e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gy 377 (539)
+|.+...+.+.++||++|++|+|+||.+|+++||+|+++||||||+|||||+++||+||||+|+||+|+++||||+++||
T Consensus 112 ~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~g~~Vll~~Dsltr~a~A~rei~~~~ge~p~~~gy 191 (326)
T cd01136 112 EFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGY 191 (326)
T ss_pred HHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHHhcCCCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEE
Q psy13776 378 PGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVV 457 (539)
Q Consensus 378 Pg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~ 457 (539)
||++|+.|++|+||||+.+ +||||+||+|++|+||++|||||++++|+||||+|||+||++|
T Consensus 192 p~~~~~~~~~l~ERag~~~----~GSIT~i~tv~~~gdd~~dpi~~~~~~~~dg~ivL~r~la~~g-------------- 253 (326)
T cd01136 192 PPSVFALLPRLLERAGNSD----KGSITAFYTVLVEGDDLNEPIADAVRSILDGHIVLSRALAAAG-------------- 253 (326)
T ss_pred ChHHHHHhHHHHHHhcCCC----CCCeeeeeeeeecCCCCCcchHHhhhhccceEEEEcCcHHHcC--------------
Confidence 9999999999999999863 5999999999999999999999999999999999999999999
Q ss_pred ecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 458 FGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 458 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
+|||||++.|+||+++.++.+.| +.+.++|+ +|++|+|+
T Consensus 254 -------------------------------------~~PAid~~~S~SR~~~~~~~~~~~~~a~~~r~---~l~~y~e~ 293 (326)
T cd01136 254 -------------------------------------HYPAIDVLKSISRLMNAVVTPEHKEAARKLRE---LLSAYQEV 293 (326)
T ss_pred -------------------------------------CCCCcccccccccCccccCCHHHHHHHHHHHH---HHHHhHHH
Confidence 79999999999999999999999 77889999 88888886
Q ss_pred h
Q psy13776 537 Y 537 (539)
Q Consensus 537 ~ 537 (539)
.
T Consensus 294 ~ 294 (326)
T cd01136 294 E 294 (326)
T ss_pred H
Confidence 3
No 47
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=1.9e-71 Score=574.75 Aligned_cols=213 Identities=23% Similarity=0.360 Sum_probs=201.3
Q ss_pred ccccccccccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchh
Q psy13776 182 RRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHAL 261 (539)
Q Consensus 182 ~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~ 261 (539)
.+..+++||.||||+||+|+||+||||++|||++|+|||+|+ .+|++|++.
T Consensus 133 ~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~-~~Iak~~~~---------------------------- 183 (369)
T cd01134 133 EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQ-QSLSKYSNS---------------------------- 183 (369)
T ss_pred ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHHH-HHHHhCCCC----------------------------
Confidence 455669999999999999999999999999999999999998 678877643
Q ss_pred hhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHh-------cCCCCceEEEEEecCCCChhhhhhhhHHHH
Q psy13776 262 IIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLT-------DSGAMGYTIIVSATASDAAPLQYLAPYSGC 334 (539)
Q Consensus 262 ~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~-------~~~~~~~tvvV~atad~~a~~r~~ap~~a~ 334 (539)
.+|||++||||++|+++|++++. +.+.|+||++|+||||+|+.+|++++|+|+
T Consensus 184 --------------------dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~s~yta~ 243 (369)
T cd01134 184 --------------------DIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTGI 243 (369)
T ss_pred --------------------CEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHHHHHHHHHH
Confidence 26999999999999999999975 578899999999999999999999999999
Q ss_pred HHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCC---CCCccceeeeEEE
Q psy13776 335 AMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEA---HGGGSLTALPVIE 411 (539)
Q Consensus 335 tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~---~g~GSITal~~v~ 411 (539)
|+||||||+|+|||+++||+||||+|+||||++++|||+++|||+++|+.+++||||||++++. .++||||++++|+
T Consensus 244 tiAEYfrd~G~dVll~~Ds~tR~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSIT~i~~V~ 323 (369)
T cd01134 244 TIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGAVS 323 (369)
T ss_pred HHHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999998643 3579999999999
Q ss_pred eeCCCcCCccccccccccceeEEeehhHHhcc
Q psy13776 412 TQAGDVSAYIPTNVISITDGQIFLETELFYKG 443 (539)
Q Consensus 412 ~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g 443 (539)
+++||++||||+++++|+||||+|||+||++|
T Consensus 324 ~~g~D~sdPV~~~t~~i~dg~i~Lsr~La~~g 355 (369)
T cd01134 324 PPGGDFSEPVTQATLRIVQVFWGLDKKLAQRR 355 (369)
T ss_pred ccCCCcCcchHHhhHhhcceEEEECHHHHhCC
Confidence 99999999999999999999999999999999
No 48
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=5.4e-71 Score=634.43 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=188.4
Q ss_pred eEEEEEeeccchhHHHHHHHHH-------hcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecCh
Q psy13776 282 LYCIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDL 354 (539)
Q Consensus 282 ~~~Vy~~IGer~~ev~e~~~~l-------~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~Dsl 354 (539)
.+|||++||||++||+||++++ .+.++|+|||+|+||||+|+++|+++||+|+||||||||||+|||+++||+
T Consensus 683 di~V~~~iGERg~Ev~e~l~~~~~l~~~~~g~~~m~rtvlv~~ts~~p~~~R~~s~y~a~tiAEyfrd~G~~Vll~~Ds~ 762 (1017)
T PRK14698 683 QVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADST 762 (1017)
T ss_pred CEEEEEeeccchHHHHHHHHHHHhhcccccCccccccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 6899999999999999999999 458999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhccc---CCCCCccceeeeEEEeeCCCcCCccccccccccce
Q psy13776 355 SKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMS---EAHGGGSLTALPVIETQAGDVSAYIPTNVISITDG 431 (539)
Q Consensus 355 Tr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~---~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDG 431 (539)
||||+|+||||+++||||+++||||++|+.+|+||||||++. ...++||||++|+|++|+||++|||||++++|+||
T Consensus 763 sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~l~~~~~~GSIT~i~~V~~~g~D~s~Pv~~~~~~i~dg 842 (1017)
T PRK14698 763 SRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKV 842 (1017)
T ss_pred hHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhccCCcccCCCCCCcceEEEEEEECCCCCCCCcHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999864 22357999999999999999999999999999999
Q ss_pred eEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCch
Q psy13776 432 QIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSA 511 (539)
Q Consensus 432 qIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~ 511 (539)
||+|||+||++| +|||||++.|+||+++.
T Consensus 843 ~i~L~~~La~~g---------------------------------------------------~~PAId~l~S~Sr~~~~ 871 (1017)
T PRK14698 843 FWALDADLARRR---------------------------------------------------HFPAINWLTSYSLYVDA 871 (1017)
T ss_pred EEecCHHHHhCC---------------------------------------------------CCCCcCcccchhhhccc
Confidence 999999999999 69999999999999987
Q ss_pred h-------hhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 512 A-------QTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 512 ~-------~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
+ .++.+ +.....|+ +|++|+|+.
T Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~---~l~~~~el~ 902 (1017)
T PRK14698 872 VKDWWHKNVDPEWKAMRDKAME---LLQKEAELQ 902 (1017)
T ss_pred ccchhccccCHHHHHHHHHHHH---HHHHHHHHH
Confidence 7 45666 55666677 788888864
No 49
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=4e-69 Score=528.47 Aligned_cols=203 Identities=42% Similarity=0.722 Sum_probs=190.8
Q ss_pred ccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHH
Q psy13776 192 AGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271 (539)
Q Consensus 192 TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a 271 (539)
||||+||+|+|||||||++|||++|+|||+|+.+.+.|+. . |
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~-~---------------------d---------------- 42 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD-A---------------------D---------------- 42 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT-T---------------------T----------------
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhccc-c---------------------c----------------
Confidence 8999999999999999999999999999999965444443 2 1
Q ss_pred HHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEe
Q psy13776 272 VAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIY 351 (539)
Q Consensus 272 ~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~ 351 (539)
..||++||||++|+.+|++++++.++++||++|++|+|+||.+|+++||+||++||||||+|+|||+++
T Consensus 43 -----------~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~ 111 (215)
T PF00006_consen 43 -----------VVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIAEYFRDQGKDVLLII 111 (215)
T ss_dssp -----------EEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred -----------ceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhhHHHhhcCCceeehh
Confidence 349999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccce
Q psy13776 352 DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDG 431 (539)
Q Consensus 352 DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDG 431 (539)
||+||||+|+||||+++||||+++|||+++|+.|++|+||||+++...++||||++++|++|+||++||||+++++|+||
T Consensus 112 Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l~ERag~~~~~~~~GSIT~~~~v~~~~~d~~~pi~~~~~~~~dg 191 (215)
T PF00006_consen 112 DSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASLYERAGKVNSEEGGGSITAIPTVLVPGDDITDPIPDNTKSILDG 191 (215)
T ss_dssp ETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHHHTTSEEBSTTTTSEEEEEEEEEEESTTBTTSHHHHHHHTTSSE
T ss_pred hhhHHHHHHHHhhhcccccccccccccchhccchhhHHHHhhccccccCCceeeeecccccccccccchHHHHHHhhcce
Confidence 99999999999999999999999999999999999999999999666679999999999999999999999999999999
Q ss_pred eEEeehhHHhcc
Q psy13776 432 QIFLETELFYKG 443 (539)
Q Consensus 432 qIvLsr~La~~g 443 (539)
||+|||+||++|
T Consensus 192 ~i~L~r~la~~~ 203 (215)
T PF00006_consen 192 HIVLSRKLAERG 203 (215)
T ss_dssp EEEB-HHHHHTT
T ss_pred EEEeCHHHHhCC
Confidence 999999999999
No 50
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=3e-66 Score=541.24 Aligned_cols=294 Identities=18% Similarity=0.218 Sum_probs=261.8
Q ss_pred CcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcc-cchhccccccccccccccccc-cccceeeeeeeec
Q psy13776 128 VISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALA-IDTIINQKRKKRRRLLKYNLL-SAGIKAVDSLVPI 203 (539)
Q Consensus 128 ~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~-~~~~~~~~~~~r~ri~~~epl-~TGIraID~l~pI 203 (539)
..+|+.|+.|..++++ ++|+.+||||+ +|+|+|+..... .+...+..|..|.++ .++. .+|+|+||+|+||
T Consensus 56 ~~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~~~~~~~~~~pi~p~~R~~i--e~~~~~~~~RvID~l~Pi 130 (380)
T PRK12608 56 RFNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLARRPHFDDLTPLHPRERLRL--ETGSDDLSMRVVDLVAPI 130 (380)
T ss_pred HhCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhcccccCcCcCCCCCccccccc--cccCcchhHhhhhheeec
Confidence 5789999999999998 99999999999 999999863211 121222235566666 6777 8999999999999
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceE
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLY 283 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~ 283 (539)
|||||++|+|++|+|||||+ .+|++.... +++++.
T Consensus 131 GkGQR~LIvG~pGtGKTTLl-~~la~~i~~--------------------------------------------~~~dv~ 165 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLL-QQIAAAVAA--------------------------------------------NHPEVH 165 (380)
T ss_pred CCCceEEEECCCCCCHHHHH-HHHHHHHHh--------------------------------------------cCCCce
Confidence 99999999999999999998 456655432 124578
Q ss_pred EEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHH
Q psy13776 284 CIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 363 (539)
Q Consensus 284 ~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Re 363 (539)
|+|++||||++||++|++.+.. +++++++|+|+..+..+.++++++||||+++|+||+|++||+||||+||||
T Consensus 166 ~vv~lIgER~~EV~df~~~i~~-------~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~re 238 (380)
T PRK12608 166 LMVLLIDERPEEVTDMRRSVKG-------EVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNN 238 (380)
T ss_pred EEEEEecCCCCCHHHHHHHHhh-------hEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHh
Confidence 9999999999999999999975 788889999998888899999999999999999999999999999999999
Q ss_pred hhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEee-CCCcCCccccccccccceeEEeehhHHhc
Q psy13776 364 MSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQ-AGDVSAYIPTNVISITDGQIFLETELFYK 442 (539)
Q Consensus 364 isl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~-~~D~s~pIp~~~~sitDGqIvLsr~La~~ 442 (539)
+++..||||+ .|||+++|+.++||+|||++.. ++||||+|+||+++ ++||+|||+++++|++||||+|||+||++
T Consensus 239 i~~~~G~~~s-~G~~~s~~~~~~rl~~~A~~~~---~~GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~ 314 (380)
T PRK12608 239 EVESSGRTLS-GGVDARALQRPKRLFGAARNIE---EGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADK 314 (380)
T ss_pred hhcccCCCCC-CCcChHHHhhhHHHHHhcCCCC---CCcchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhC
Confidence 9999999999 9999999999999999999863 58999999999999 88999999999999999999999999999
Q ss_pred cCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhh
Q psy13776 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTG 521 (539)
Q Consensus 443 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~ 521 (539)
| +|||||+..|+||+++...++++ +++.
T Consensus 315 ~---------------------------------------------------~fPAIDi~~S~sR~~~~l~~~~~~~~~~ 343 (380)
T PRK12608 315 R---------------------------------------------------VFPAIDIAKSGTRREELLLDSKELEKVR 343 (380)
T ss_pred C---------------------------------------------------CCCccCcccccCcchhhcCCHHHHHHHH
Confidence 9 79999999999999999999999 8899
Q ss_pred hhhhHHHHHHHhhhh
Q psy13776 522 KIRSWNGWLSLLKQL 536 (539)
Q Consensus 522 ~~r~~~~~~~~~~~~ 536 (539)
.+|+ +|+.|++.
T Consensus 344 ~~R~---~l~~~~~~ 355 (380)
T PRK12608 344 RLRR---ALASRKPV 355 (380)
T ss_pred HHHH---HHHccCHH
Confidence 9999 77777653
No 51
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=6.4e-64 Score=515.16 Aligned_cols=318 Identities=22% Similarity=0.313 Sum_probs=290.4
Q ss_pred CCCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccc--hhc--cccccccccc-cccc
Q psy13776 116 QAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAID--TII--NQKRKKRRRL-LKYN 188 (539)
Q Consensus 116 ~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~--~~~--~~~~~~r~ri-~~~e 188 (539)
+++.|..+.++.++|+..|+.|..||++.+||||+..|||++ +|+|+|+.+|+... +.+ +.+++..... ..+|
T Consensus 50 g~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VPVG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~E 129 (468)
T COG0055 50 GDNVVRTIAMGSTDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTE 129 (468)
T ss_pred CCCeEEEEEecCccCcccCcEEecCCCceEEecchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchh
Confidence 348899999999999999999999999999999999999999 99999999998754 222 2333333333 4599
Q ss_pred cccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhh
Q psy13776 189 LLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLS 268 (539)
Q Consensus 189 pl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~ 268 (539)
.|+||||+||.|.|+-||.|+|+||++|+|||.|+++.|.|-+..
T Consensus 130 IleTGIKVIDll~P~~kGgKiGLFGGAGVGKTVl~~ELI~Nia~~----------------------------------- 174 (468)
T COG0055 130 ILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKE----------------------------------- 174 (468)
T ss_pred hhhhCceEEEEecccccCceeeeeccCCccceeeHHHHHHHHHHH-----------------------------------
Confidence 999999999999999999999999999999999998777665432
Q ss_pred hHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHC-CCcE
Q psy13776 269 KQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN-GKHA 347 (539)
Q Consensus 269 ~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~-GkdV 347 (539)
++.+.||+++|||.||..+++.++++++.+++|++|...+|+||+.|.+.+.+|+||||||||+ |+||
T Consensus 175 -----------h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AEyfRD~~gqdV 243 (468)
T COG0055 175 -----------HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEYFRDEEGQDV 243 (468)
T ss_pred -----------cCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehhhhhhHHHHhhcccCCeE
Confidence 2358999999999999999999999999999999999999999999999999999999999996 9999
Q ss_pred EEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCcccccccc
Q psy13776 348 LIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVIS 427 (539)
Q Consensus 348 Lli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~s 427 (539)
|+++|++.||.+|-+|+|.+|||+|+.-||+|.+-..+..|.||... +..||||++.+|++|+||++||-|..+++
T Consensus 244 LlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERIts----tk~GSITSiQavyvPaDDlTDPapattFa 319 (468)
T COG0055 244 LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITS----TKKGSITSVQAVYVPADDLTDPAPATTFA 319 (468)
T ss_pred EEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhc----CCCCceEEEEEEEeccccCCCcchhhhhh
Confidence 99999999999999999999999999999999999999999999987 34799999999999999999999999999
Q ss_pred ccceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccc
Q psy13776 428 ITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSR 507 (539)
Q Consensus 428 itDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr 507 (539)
++|..++|||++|+.| +|||||++.|.||
T Consensus 320 HLDat~vLsR~ia~~G---------------------------------------------------IyPAvDPL~StSr 348 (468)
T COG0055 320 HLDATTVLSRQIAALG---------------------------------------------------IYPAVDPLDSTSR 348 (468)
T ss_pred hcccceeeeHhHHhcC---------------------------------------------------CCcccCccccccc
Confidence 9999999999999999 7999999999999
Q ss_pred cCch-hhhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 508 VGSA-AQTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 508 ~~~~-~~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
..+. ...+.| +.+.++++ .|++||+|+
T Consensus 349 ~l~p~ivGe~Hy~va~~vq~---iLqrYkeLq 377 (468)
T COG0055 349 ALDPKIVGEEHYEVAREVQS---ILQRYKELQ 377 (468)
T ss_pred ccCcccccHHHHHHHHHHHH---HHHHHHHHH
Confidence 9877 688888 66666666 999999986
No 52
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=1.1e-63 Score=517.06 Aligned_cols=323 Identities=22% Similarity=0.342 Sum_probs=298.9
Q ss_pred hhccccccc--CC--eEEEEEeccccCCCcEEEEcccCCcCCCCCCE-EEEecccccccCCCcccceeE--eeeccCCCC
Q psy13776 94 RSAKMSEAH--GG--GSLTALPVIETQAGDVSAYIPTNVISITDGQI-FLETELFYKVDRGSINCGQLI--IGDRQTGKT 166 (539)
Q Consensus 94 ~~gEVV~f~--~g--~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~-V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~ 166 (539)
.++|+|+.+ +| ..|.|+++.. +.+.+++|+.+.|+...+. |+++|+++.+|++++||||++ +|+||||.+
T Consensus 27 ~y~E~v~i~~~~G~~r~gqVle~~~---~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~vs~dllGRifnG~G~PiDggp 103 (463)
T COG1156 27 SYGELVEIETPDGEVRRGQVLEVRG---DKAVVQVFEGTSGLDTKGTTVRFTGETLKIPVSEDLLGRIFNGSGKPIDGGP 103 (463)
T ss_pred CcceEEEEECCCCCeeeeeEeeccC---ceEEEEEeecccCCCCCCceEEEeCceEEEeecHHhhhhhhcCCCCcCCCCC
Confidence 788998874 23 6899999999 9999999999999998765 999999999999999999999 999999999
Q ss_pred Ccccchhc---cccccccccccccccccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhcccccccccc
Q psy13776 167 ALAIDTII---NQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAP 243 (539)
Q Consensus 167 ~i~~~~~~---~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~ 243 (539)
.+..++.. ..+.++..|+.|.++++|||++||+|+++.||||.+||.++|-..+.|| .+|+.|+..
T Consensus 104 ~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~La-aqIarQA~v---------- 172 (463)
T COG1156 104 EIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELA-AQIARQATV---------- 172 (463)
T ss_pred cCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccccccccCCCCchHHHH-HHHHHhccc----------
Confidence 88766543 2457888899999999999999999999999999999999999999999 788888764
Q ss_pred ccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCCh
Q psy13776 244 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAA 323 (539)
Q Consensus 244 ~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a 323 (539)
+ .+.+++.+||+++|-+..|...|.+.+++.|+++|++++.+.+|||+
T Consensus 173 -----------~---------------------~~~e~favVfaamGit~eea~fF~~~fe~tGal~r~vlflnlA~dp~ 220 (463)
T COG1156 173 -----------D---------------------GEEEEFAVVFAAMGITHEEALFFMDEFEETGALDRAVLFLNLADDPA 220 (463)
T ss_pred -----------C---------------------CCccceeEEEeecCccHHHHHHHHHHHHhhhhhhhhHhhhhccCCCc
Confidence 1 11246789999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHH-CCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCc
Q psy13776 324 PLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGG 402 (539)
Q Consensus 324 ~~r~~ap~~a~tiAEyFrd-~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~G 402 (539)
.+|.++|.+|+|.||||+. +++|||+|+.|||.||+|+||||.+.+|.|+|+||||++|+.++.+|||||++.. .+|
T Consensus 221 vEri~tPr~aLt~AEylA~e~~~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~g--~~G 298 (463)
T COG1156 221 VERIITPRMALTVAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRG--RKG 298 (463)
T ss_pred eeEecchhHHHHHHHHHhccCCceEEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhceecc--CCC
Confidence 9999999999999999985 6999999999999999999999999999999999999999999999999999875 389
Q ss_pred cceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccc
Q psy13776 403 SLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVG 482 (539)
Q Consensus 403 SITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 482 (539)
|||.+|+.++|+||++|||||++.+||+|||+|||+|..+|
T Consensus 299 SiTqipIlTMP~DDITHPIPDlTGYITEGQivl~r~l~~~g--------------------------------------- 339 (463)
T COG1156 299 SITQIPILTMPGDDITHPIPDLTGYITEGQIVLSRDLHRKG--------------------------------------- 339 (463)
T ss_pred ceEEEEeeecCCCCcCCCCCcccceeccceEEEEhhcccCC---------------------------------------
Confidence 99999999999999999999999999999999999999999
Q ss_pred cccchhhccccCCCccccccccccccCchhhhH
Q psy13776 483 EDLLGRVVDALGIRPAINVGLSVSRVGSAAQTR 515 (539)
Q Consensus 483 ~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~ 515 (539)
+||.|||..|.||.|.....+
T Consensus 340 ------------IyPpi~vlpSLSRL~~~giG~ 360 (463)
T COG1156 340 ------------IYPPINVLPSLSRLMKDGIGE 360 (463)
T ss_pred ------------cCCCccccccHHHHhhcccCC
Confidence 799999999999999886554
No 53
>KOG1353|consensus
Probab=100.00 E-value=4.3e-64 Score=494.06 Aligned_cols=285 Identities=53% Similarity=0.701 Sum_probs=261.5
Q ss_pred HHHHHHHHHhcCcchhhhhhhhcccccccCceeeecCCe----eEEccchhhhhcccccccCCeEEEEEeccccCCCcEE
Q psy13776 46 ISSILEERILGSAPKAVAYRQMSLLLRRPPGREAYPGDV----FYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVS 121 (539)
Q Consensus 46 i~~~l~~~i~~~~~~~~~~~ei~g~~~e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~ 121 (539)
+++++||||.++.+.+++ ++.|++++|||| +||.|. +++|||+|++|.+||++||+. ++++
T Consensus 1 ~SsI~EErI~~~~~~a~l---------eEtgrVLsIGdGIArV~GL~nv---QAeEmvEFssGlKgmalnle~---~~vg 65 (340)
T KOG1353|consen 1 MSSIFEERIVGDNTSADL---------EETGRVLSIGDGIARVYGLTNV---QAEEMVEFSSGLKGMALNLEG---ENVG 65 (340)
T ss_pred CchHHHHHhhccccccch---------hhccceEEEcCceeeeeccccc---chHHHHhhhccccchhccccC---CceE
Confidence 478999999999999999 999999999999 999999 999999999999999999999 9999
Q ss_pred EEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhccccccccccccccccccccceeeee
Q psy13776 122 AYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDS 199 (539)
Q Consensus 122 l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~~~~~~r~ri~~~epl~TGIraID~ 199 (539)
+++|++..-+++|+.|++|+....||+|+.|+|||+ +|+|+||++++...+. ...+|..+ .+|++||+|++|+
T Consensus 66 ~v~~g~d~~ikeg~~VkrTgaIvDVpvg~~LlgrvvdAlGn~idgkG~i~~~~~---~ii~r~Sv--~epmqtg~KAvds 140 (340)
T KOG1353|consen 66 VVVFGEDSLIKEGDTVKRTAAISDVPPLKALLGRVGCALGEPIDGNGKISAKER---RIIPRASV--DEPMQTGLKAVDS 140 (340)
T ss_pred EEEEcCcceeccCceEEeeeeeeccCchHHHhhhhhhhhcCeecCCCCcccccc---ccccceee--echhhhhhhHhhc
Confidence 999999999999999999999999999999999999 9999999999854321 12334444 9999999999999
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhccc
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEK 279 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~ 279 (539)
++|||||||++|+|+++||||+|++|+|+||+.. |+ ..+++
T Consensus 141 lVpigRgqrELiIgdRqTGkTsla~dTI~nqk~~--------------------N~-------------------~~~ek 181 (340)
T KOG1353|consen 141 LVPIGRGQRELIIGDRQTGKTSLAIDTILNQKRG--------------------NE-------------------CLDEK 181 (340)
T ss_pred eeeeccCceEEEeccccCCceeeeehhhhhhhhh--------------------cc-------------------ccccc
Confidence 9999999999999999999999999999999964 22 23477
Q ss_pred CceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHH
Q psy13776 280 KKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 359 (539)
Q Consensus 280 ~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~ 359 (539)
++++|||++||||.++|++++++|.++++|+||++|++|++
T Consensus 182 kKiyCvyvaigqkrStvaqlv~~l~~~~a~~y~ivv~atas--------------------------------------- 222 (340)
T KOG1353|consen 182 KKIYCVYVAIGQKRSTVAQLVQRLEEADAMEYSIVVAATAS--------------------------------------- 222 (340)
T ss_pred ceEEEEEEecccchhHHHHHHHHHHhcCCceEEEEEEeecc---------------------------------------
Confidence 89999999999999999999999999999999999999997
Q ss_pred HhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhH
Q psy13776 360 AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 439 (539)
Q Consensus 360 A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~L 439 (539)
++||+++|||+|++|| ||||||+.+|
T Consensus 223 -----------------------------------------------------q~gdvsayiptnvisi-dgqi~l~t~l 248 (340)
T KOG1353|consen 223 -----------------------------------------------------QAGDVSAYIPTNVISI-DGQIFLETEL 248 (340)
T ss_pred -----------------------------------------------------cccceeeecccceeee-cchhHHHHHH
Confidence 8999999999999999 9999999999
Q ss_pred HhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHHHH
Q psy13776 440 FYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAMKQ 519 (539)
Q Consensus 440 a~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~~~ 519 (539)
|++| ++|||||++||||||+++|+++||+
T Consensus 249 fy~g---------------------------------------------------irpainvg~svsrvgsaaq~kamkq 277 (340)
T KOG1353|consen 249 FYKG---------------------------------------------------IRPAINVGLSVSRVGSAAQTKAMKQ 277 (340)
T ss_pred HHhc---------------------------------------------------cchhheeeeEeeeccchHHHHHHHH
Confidence 9999 7999999999999999999999999
Q ss_pred hhhhhhHHHHHHHhhh
Q psy13776 520 TGKIRSWNGWLSLLKQ 535 (539)
Q Consensus 520 ~~~~r~~~~~~~~~~~ 535 (539)
+++.-+ --|+.|.|
T Consensus 278 vag~~k--lelaq~re 291 (340)
T KOG1353|consen 278 VAGSLK--LELAQYRE 291 (340)
T ss_pred Hhhhhh--hHHHHHHH
Confidence 887644 24555544
No 54
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=3.3e-61 Score=520.18 Aligned_cols=287 Identities=20% Similarity=0.259 Sum_probs=241.9
Q ss_pred CcCCCCCCEEEEecccccccCCC--------cccceeEeeeccCCCCCc------ccchhcccccccccccccccccccc
Q psy13776 128 VISITDGQIFLETELFYKVDRGS--------INCGQLIIGDRQTGKTAL------AIDTIINQKRKKRRRLLKYNLLSAG 193 (539)
Q Consensus 128 ~~gi~~G~~V~~tg~~~~VpVG~--------~LLGRVvlG~PiDgk~~i------~~~~~~~~~~~~r~ri~~~epl~TG 193 (539)
..+|+.||.|...-+..+ -|+ .-|-|| +.++|..+- .++.+.+..|+.|.++ .++|+.||
T Consensus 330 r~~Lr~Gd~v~G~vr~p~--~~e~~~~r~k~~~l~~v---~~vNg~~~e~~~~r~~F~~Ltp~~P~~R~~l-e~e~~~~g 403 (672)
T PRK12678 330 KNGLRKGDAVTGAVRAPR--EGEQGNQRQKFNPLVRL---DSVNGMSPEEAKKRPEFGKLTPLYPNERLRL-ETEPKKLT 403 (672)
T ss_pred HcCCCCCCEEEEeecCCC--CCccccccceeeeeeeE---eeeCCCChHHhccCCCcccCCCCChHHhccc-ccCccccc
Confidence 568899999986433322 233 112232 445554332 2333444445666666 24999999
Q ss_pred ceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHH
Q psy13776 194 IKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVA 273 (539)
Q Consensus 194 IraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~ 273 (539)
+|+||+|+|||||||+||||++++|||+|+ .+|+||...
T Consensus 404 iRvIDll~PIGkGQR~LIvgpp~aGKTtLL-~~IAn~i~~---------------------------------------- 442 (672)
T PRK12678 404 TRVIDLIMPIGKGQRGLIVSPPKAGKTTIL-QNIANAITT---------------------------------------- 442 (672)
T ss_pred ceeeeeecccccCCEeEEeCCCCCCHHHHH-HHHHHHHhh----------------------------------------
Confidence 999999999999999999999999999998 569988753
Q ss_pred hhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecC
Q psy13776 274 YRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDD 353 (539)
Q Consensus 274 ~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~Ds 353 (539)
+++++.|||++||||++||.+|.+.++. .||++|+|+||.+|++++|+||++||||+++|+||||||||
T Consensus 443 ----n~~~~~~ivvLIgERpeEVtdm~rsVkg-------eVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDS 511 (672)
T PRK12678 443 ----NNPECHLMVVLVDERPEEVTDMQRSVKG-------EVIASTFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDS 511 (672)
T ss_pred ----cCCCeEEEEEEEeCchhhHHHHHHhccc-------eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 2345789999999999999998544321 39999999999999999999999999999999999999999
Q ss_pred hhHHHHHhHHhhhccCC-----CCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEee-CCCcCCcccccccc
Q psy13776 354 LSKQAVAYRQMSLLLRR-----PPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQ-AGDVSAYIPTNVIS 427 (539)
Q Consensus 354 lTr~A~A~Reisl~lge-----pP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~-~~D~s~pIp~~~~s 427 (539)
|||||+||||+++..|| ||+..+|||++||.++|++|+ +||||+|+||+++ +++|++||++++++
T Consensus 512 lTR~ArAyrev~~~sGr~lSGG~d~~a~ypP~~F~~~AR~iE~---------gGSLTii~TvLVETGS~mDd~Ifeefkg 582 (672)
T PRK12678 512 ITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIEN---------GGSLTIIATALVETGSKMDEVIFEEFKG 582 (672)
T ss_pred chHHHHHHHHhhcCCCCccCCCCchhhccCccHHHHHHHhhcc---------CccceeeEEEEeccCCccCcchHHHHhh
Confidence 99999999999999999 788999999999999999992 7999999999999 67999999999999
Q ss_pred ccceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccc
Q psy13776 428 ITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSR 507 (539)
Q Consensus 428 itDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr 507 (539)
++||||+|||+|+++| +||||||+.|+||
T Consensus 583 tgn~elvLsR~LAerr---------------------------------------------------ifPAIDv~~S~SR 611 (672)
T PRK12678 583 TGNMELKLDRKLADKR---------------------------------------------------IFPAVDVNASGTR 611 (672)
T ss_pred ccCceeeECHHHHhCC---------------------------------------------------CCCccCCCcCccc
Confidence 9999999999999999 7999999999999
Q ss_pred cCchhhhHHH-HHhhhhhhHHHHHHHhhh
Q psy13776 508 VGSAAQTRAM-KQTGKIRSWNGWLSLLKQ 535 (539)
Q Consensus 508 ~~~~~~~~~~-~~~~~~r~~~~~~~~~~~ 535 (539)
++..+.++.+ +.+.++|+ +|+.|..
T Consensus 612 ~ee~l~~~~e~~~~~~lRr---~l~~~~~ 637 (672)
T PRK12678 612 KEELLLSPDELAIVHKLRR---VLSGLDS 637 (672)
T ss_pred cchhhCCHHHHHHHHHHHH---HHHcCCH
Confidence 9999999998 88999999 5555543
No 55
>KOG1351|consensus
Probab=100.00 E-value=7.3e-61 Score=479.89 Aligned_cols=343 Identities=22% Similarity=0.314 Sum_probs=309.7
Q ss_pred eEEccchhhhhcccccc--cCC--eEEEEEeccccCCCcEEEEcccCCcCCCC-CCEEEEecccccccCCCcccceeE--
Q psy13776 85 FYLHSRLLERSAKMSEA--HGG--GSLTALPVIETQAGDVSAYIPTNVISITD-GQIFLETELFYKVDRGSINCGQLI-- 157 (539)
Q Consensus 85 ~gL~~~~~~~~gEVV~f--~~g--~~G~vl~l~~~~~d~v~l~~~g~~~gi~~-G~~V~~tg~~~~VpVG~~LLGRVv-- 157 (539)
.-|.+..-.+++|+|.+ .+| ..|.||.+.. +++.+++|+.+.|+-. -+.|.+||..++.||++++||||+
T Consensus 35 vild~vkfp~y~eiv~ltlpdgt~r~gqvlev~g---~kavvqvfegtsgid~k~t~~eftg~~lr~pvsedmlgrifng 111 (489)
T KOG1351|consen 35 VILDKVKFPKYAEIVNLTLPDGSVRSGQVLEVSG---EKAVVQVFEGTSGIDAKKTTVEFTGEILRTPVSEDMLGRIFNG 111 (489)
T ss_pred EEEecccccchhhheEEecCCCCeecceEEEecC---CeeEEEEeccccccccccceEEEecccccccccHHHhhhhhcC
Confidence 34444433489999887 444 5799999888 9999999999999984 689999999999999999999999
Q ss_pred eeeccCCCCCcccchhc---cccccccccccccccccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhc
Q psy13776 158 IGDRQTGKTALAIDTII---NQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIY 234 (539)
Q Consensus 158 lG~PiDgk~~i~~~~~~---~~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~ 234 (539)
.|+|||.++++-.+.++ .++.+++.|+.|.|.++|||.+||.|..|.|||+++||..+|.....+| .+|++|+...
T Consensus 112 sgkpid~gp~vl~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargqkipifsaaglphneia-aqicrqaglv 190 (489)
T KOG1351|consen 112 SGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIA-AQICRQAGLV 190 (489)
T ss_pred CCCccCCCCCcChHHhhccCCCcCCcccccChHHHHHhCchHHhhhhHHhccCccceeecCCCChhHHH-HHHHHhcCcc
Confidence 99999999988777653 3578899999999999999999999999999999999999999999999 7899998642
Q ss_pred cccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEE
Q psy13776 235 AAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTII 314 (539)
Q Consensus 235 ~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvv 314 (539)
+ .. ++++ . ..+..++.+||+++|-.-++.+.|.+.++++|.|+++++
T Consensus 191 k--------~~-----------~k~~-----------~---d~~~dnfaivfaamgvnmetarffk~dfeengsm~~v~l 237 (489)
T KOG1351|consen 191 K--------RP-----------EKDV-----------H---DGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCL 237 (489)
T ss_pred c--------cC-----------Cccc-----------c---cccccceeeeehhhcccHHHHHHHHhhHHhcCCccceEE
Confidence 1 11 1111 1 112346899999999999999999999999999999999
Q ss_pred EEecCCCChhhhhhhhHHHHHHHHHHHHC-CCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhh
Q psy13776 315 VSATASDAAPLQYLAPYSGCAMGEFFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSA 393 (539)
Q Consensus 315 V~atad~~a~~r~~ap~~a~tiAEyFrd~-GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag 393 (539)
+.+-++||..+|.+.|..|+|.|||+++| +||||+|+.|++.||+|+||+|.+..|.|||+||||+||..++-+|||||
T Consensus 238 flnlandptieriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyerag 317 (489)
T KOG1351|consen 238 FLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAG 317 (489)
T ss_pred EEecCCCCchhhhcchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHHHHHHHhc
Confidence 99999999999999999999999999986 99999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeec
Q psy13776 394 KMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRT 473 (539)
Q Consensus 394 ~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t 473 (539)
++..+ +||||.+|+.++|.||++|||||.+.+||+||||.||+|+++.
T Consensus 318 rvegr--~gsitqipiltmpnddithpipdltgyitegqiyvdrqlhnr~------------------------------ 365 (489)
T KOG1351|consen 318 RVEGR--NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQ------------------------------ 365 (489)
T ss_pred ccccC--CCceeeeeeEecCCcccCCCCCcccceeecceEEEehhhhccc------------------------------
Confidence 99864 7999999999999999999999999999999999999999999
Q ss_pred cceeecccccccchhhccccCCCccccccccccccCchhhhHHH
Q psy13776 474 GAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM 517 (539)
Q Consensus 474 ~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~ 517 (539)
+||.|||+-|.||+|.++..+.|
T Consensus 366 ---------------------iyppinvlpslsrlmksaigegm 388 (489)
T KOG1351|consen 366 ---------------------IYPPINVLPSLSRLMKSAIGEGM 388 (489)
T ss_pred ---------------------CCCCcccchhHHHHHHHHhcCCc
Confidence 79999999999999999887776
No 56
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.4e-59 Score=492.62 Aligned_cols=296 Identities=19% Similarity=0.235 Sum_probs=252.9
Q ss_pred CcCCCCCCEEEEecccccccCCCc--ccceeE--eeeccCC-CCCcccchhccccccccccccccccccccceeeeeeee
Q psy13776 128 VISITDGQIFLETELFYKVDRGSI--NCGQLI--IGDRQTG-KTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVP 202 (539)
Q Consensus 128 ~~gi~~G~~V~~tg~~~~VpVG~~--LLGRVv--lG~PiDg-k~~i~~~~~~~~~~~~r~ri~~~epl~TGIraID~l~p 202 (539)
..+++.||.|...-++.+ -|+. -|-+|- .|.+.+. +....++.+.+..|..|.++....|+.||+|+||+|+|
T Consensus 88 ~~~lr~gd~v~g~~r~~~--~~e~~~~l~~v~~vng~~~~~~~~r~~f~~l~p~~p~~R~~le~~~~~~~~~rvID~l~P 165 (416)
T PRK09376 88 RFNLRTGDTVEGKIRPPK--EGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRLETGNPEDLSTRIIDLIAP 165 (416)
T ss_pred hcCCCCCCEEEEEeeCCC--CCCCccceEEEeeeCCCCHHHhcCCCCcccCCCCChhhcccccCCCCcccceeeeeeecc
Confidence 568999999988766532 2333 233443 4443322 22233444445456667777322389999999999999
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCce
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKL 282 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~ 282 (539)
||||||++||||+|+|||||+ .+|.|+... ++.++
T Consensus 166 IGkGQR~lIvgppGvGKTTLa-K~Ian~I~~--------------------------------------------nhFDv 200 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLL-QNIANSITT--------------------------------------------NHPEV 200 (416)
T ss_pred cccCceEEEeCCCCCChhHHH-HHHHHHHHh--------------------------------------------hcCCe
Confidence 999999999999999999998 567776643 12357
Q ss_pred EEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhH
Q psy13776 283 YCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYR 362 (539)
Q Consensus 283 ~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~R 362 (539)
.|+|++||||++||.++.+.+.. +||++|+|+||..|++++|+++++||||+++|+||||++||+||||+|||
T Consensus 201 ~~~VvLIgER~~EVtdiqrsIlg-------~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~arAqr 273 (416)
T PRK09376 201 HLIVLLIDERPEEVTDMQRSVKG-------EVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYN 273 (416)
T ss_pred EEEEEEeCCchhHHHHHHHHhcC-------cEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHHHHHHH
Confidence 89999999999999999999973 79999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEee-CCCcCCccccccccccceeEEeehhHHh
Q psy13776 363 QMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQ-AGDVSAYIPTNVISITDGQIFLETELFY 441 (539)
Q Consensus 363 eisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~-~~D~s~pIp~~~~sitDGqIvLsr~La~ 441 (539)
|+++++||||+ .|||+++|+..+||+|||++.. ++||||+|+|++++ ++||+|||++++++++||||+|||+||+
T Consensus 274 ev~~~sG~~~s-gG~~~~~~~~~~r~f~~Arn~e---~~GSlT~i~T~LvetGs~mdd~I~ee~kg~~n~~ivLdR~lA~ 349 (416)
T PRK09376 274 TVVPSSGKVLS-GGVDANALHRPKRFFGAARNIE---EGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAE 349 (416)
T ss_pred hhhhccCCCCC-CCCChhHhhhhHHHHHhhcCCC---CCcceEEEEEEEecCCCCCCccHHHHHhhhcCceEeECHHHHh
Confidence 99999999999 9999999999999999999864 38999999999999 7899999999999999999999999999
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHh
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQT 520 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~ 520 (539)
+| +|||||+..|.||++....++.+ +.+
T Consensus 350 ~r---------------------------------------------------~fPAIDi~~S~sR~~~~l~~~~~~~~~ 378 (416)
T PRK09376 350 KR---------------------------------------------------IFPAIDINRSGTRKEELLLSPEELQKV 378 (416)
T ss_pred cC---------------------------------------------------CCCccCccccccccccccCCHHHHHHH
Confidence 99 79999999999999999999999 889
Q ss_pred hhhhhHHHHHHHhhh
Q psy13776 521 GKIRSWNGWLSLLKQ 535 (539)
Q Consensus 521 ~~~r~~~~~~~~~~~ 535 (539)
..+|+ +|+.|++
T Consensus 379 ~~lR~---~l~~~~~ 390 (416)
T PRK09376 379 WILRK---ILSPMDE 390 (416)
T ss_pred HHHHH---HHHccCc
Confidence 99999 7777765
No 57
>KOG1350|consensus
Probab=100.00 E-value=3e-56 Score=450.32 Aligned_cols=316 Identities=21% Similarity=0.309 Sum_probs=287.2
Q ss_pred CcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhcc--ccccccccc-cccccccc
Q psy13776 118 GDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN--QKRKKRRRL-LKYNLLSA 192 (539)
Q Consensus 118 d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~--~~~~~r~ri-~~~epl~T 192 (539)
+.|.++.++.++|+..|+.|..||.+.+||||++.|||++ +|+|+|..+|+....+.+ ..++..... ...|.|.|
T Consensus 98 n~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipVG~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~T 177 (521)
T KOG1350|consen 98 NTVRTIAMDGTEGLVRGQKVLDTGYPISIPVGPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVT 177 (521)
T ss_pred CeEEEEEecCchhhhcCcccccCCCceeeecCHHHHhhHHHhcCCcccccCCcccccccccccCChhHhhhcccHHHHhh
Confidence 8899999999999999999999999999999999999999 999999999998765433 222222222 34789999
Q ss_pred cceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHH
Q psy13776 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 272 (539)
Q Consensus 193 GIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~ 272 (539)
|||++|.|.|..||.++++||++|+|||.|.++.|.|-+.+
T Consensus 178 GIKVvDLLAPYakGGKIGLFGGAGVGKTVlImELINNiAKa--------------------------------------- 218 (521)
T KOG1350|consen 178 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKA--------------------------------------- 218 (521)
T ss_pred cceeeeeecccccCCeeeeeccCCccceeeHHHHHHHHHHh---------------------------------------
Confidence 99999999999999999999999999999998766665443
Q ss_pred HhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCC------ceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHC-CC
Q psy13776 273 AYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM------GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN-GK 345 (539)
Q Consensus 273 ~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~------~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~-Gk 345 (539)
++-|.||+.+|||.||..++++++.+.|.+ ++..+|...+++||..|.+.+.+++|+||||||+ |+
T Consensus 219 -------HGGySVF~GvGERTREGNDLY~EM~E~gVI~l~~~~SKvaLV~GQMNePPGARaRV~LTgLTvAEYFRD~egQ 291 (521)
T KOG1350|consen 219 -------HGGYSVFAGVGERTREGNDLYHEMIESGVINLEGETSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQ 291 (521)
T ss_pred -------cCCeEEeeccccccccccHHHHHHHhcCeeeccCCcceEEEEeeccCCCCCceeeeeeecccHHHHhhccccc
Confidence 245899999999999999999999987765 7889999999999999999999999999999996 99
Q ss_pred cEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCcccccc
Q psy13776 346 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNV 425 (539)
Q Consensus 346 dVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~ 425 (539)
|||+++|++.||.+|..|+|.+|||+|+.-||+|.+-..+..+.||.... .+||||.+..|++|+||++||-|..+
T Consensus 292 DVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERITtT----kkGSiTSvQAvYVPADDLtDPaPatt 367 (521)
T KOG1350|consen 292 DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT----KKGSITSVQAVYVPADDLTDPAPATT 367 (521)
T ss_pred eEEEeehhhhhhhccchHHHHHhccCccccccCcccccchhhhhHhhhcc----ccCceeEEEEEEeehhccCCCCccce
Confidence 99999999999999999999999999999999999999999999999874 47999999999999999999999999
Q ss_pred ccccceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccc
Q psy13776 426 ISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSV 505 (539)
Q Consensus 426 ~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~ 505 (539)
++++|..-+|||.+++.| +|||+|++.|.
T Consensus 368 FaHLDAttVLSR~iaelg---------------------------------------------------IYPAVDPLDSt 396 (521)
T KOG1350|consen 368 FAHLDATTVLSRGIAELG---------------------------------------------------IYPAVDPLDST 396 (521)
T ss_pred eeccchhhhhhhhhHhcC---------------------------------------------------CccccCCcccc
Confidence 999999999999999999 79999999999
Q ss_pred cccCch-hhhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 506 SRVGSA-AQTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 506 sr~~~~-~~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
||++.. +..++| ..+.++.+ .|+.||.|+
T Consensus 397 Srimdp~ivG~eHY~vA~~Vqk---~LQ~YKsLQ 427 (521)
T KOG1350|consen 397 SRIMDPNIVGEEHYNVARGVQK---TLQDYKSLQ 427 (521)
T ss_pred ccccCccccchHHHHHHHHHHH---HHHHHHHHH
Confidence 999988 688888 66666666 999999886
No 58
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=3.1e-54 Score=453.85 Aligned_cols=239 Identities=18% Similarity=0.254 Sum_probs=219.8
Q ss_pred cccccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhh
Q psy13776 187 YNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDD 266 (539)
Q Consensus 187 ~epl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~ 266 (539)
+.|=..|+|+||.++|||+|||++|+|++|+|||||+ ..|.|....
T Consensus 149 ~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~-~~i~~~I~~--------------------------------- 194 (415)
T TIGR00767 149 TSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLL-QKIAQAITR--------------------------------- 194 (415)
T ss_pred cCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHH-HHHHHhhcc---------------------------------
Confidence 4566679999999999999999999999999999998 566655432
Q ss_pred hhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCc
Q psy13776 267 LSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKH 346 (539)
Q Consensus 267 ~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~Gkd 346 (539)
++.+..|++++||||++||.+|++.+.. .||++|+|+||..|..+++.++++||||+++|+|
T Consensus 195 -----------nhfdv~v~VlLIgER~~EVtDLqrsIlg-------~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~Gkd 256 (415)
T TIGR00767 195 -----------NHPEVELIVLLIDERPEEVTDMQRSVKG-------EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD 256 (415)
T ss_pred -----------cCCceEEEEEEcCCCCccHHHHHHHhhc-------eEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCC
Confidence 1234688999999999999999999863 8999999999999999999999999999999999
Q ss_pred EEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEee-CCCcCCcccccc
Q psy13776 347 ALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQ-AGDVSAYIPTNV 425 (539)
Q Consensus 347 VLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~-~~D~s~pIp~~~ 425 (539)
|+|++|++||||+||||+++++||||+ +||||++|+.++||+|||++.. ++||||+|+||+++ ++||+|||++++
T Consensus 257 VVLlIDEitR~arAqrei~~~~G~~~s-~G~~~~~~~~~~~~~~~a~~~~---~~GSiT~~~TvLvetg~~mdd~i~~e~ 332 (415)
T TIGR00767 257 VVILLDSITRLARAYNTVTPASGKVLS-GGVDANALHRPKRFFGAARNIE---EGGSLTIIATALIDTGSRMDEVIFEEF 332 (415)
T ss_pred eEEEEEChhHHHHHHHHhHhhcCCCCC-CCcChhhhcccHHHHhhcCCCC---CCcchhheEEEEeccCCCCCcchHHHh
Confidence 999999999999999999999999999 9999999999999999999864 48999999999999 789999999999
Q ss_pred ccccceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccc
Q psy13776 426 ISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSV 505 (539)
Q Consensus 426 ~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~ 505 (539)
++++||||+|||+||++| +|||||+..|.
T Consensus 333 kg~~~~~ivL~r~la~~~---------------------------------------------------~fPAidi~~S~ 361 (415)
T TIGR00767 333 KGTGNMELHLDRKLADRR---------------------------------------------------IFPAIDIKKSG 361 (415)
T ss_pred ccccCCeEEECHHHHhCC---------------------------------------------------CCCCcCccccc
Confidence 999999999999999999 79999999999
Q ss_pred cccCchhhhHHH-HHhhhhhhHHHHHHHhhh
Q psy13776 506 SRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQ 535 (539)
Q Consensus 506 sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~ 535 (539)
||+++...++.+ +.+..+|+ +|+.|++
T Consensus 362 sR~~~~l~~~~~~~~~~~~r~---~l~~~~~ 389 (415)
T TIGR00767 362 TRKEELLLTPEELQKIWVLRK---IISPMDS 389 (415)
T ss_pred ccchhhcCCHHHHHHHHHHHH---HHHcCCc
Confidence 999999999998 88999999 6776654
No 59
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=4e-52 Score=441.38 Aligned_cols=341 Identities=20% Similarity=0.251 Sum_probs=282.9
Q ss_pred ccccCceeeecCCeeEEccchhhhhcccccc-cCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccccccCC
Q psy13776 71 LRRPPGREAYPGDVFYLHSRLLERSAKMSEA-HGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKVDRG 149 (539)
Q Consensus 71 ~~e~~G~v~~IGDg~gL~~~~~~~~gEVV~f-~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG 149 (539)
+.+..|+++- . +|+.++ ...|+|.. +.+..|.++.++. |++.+++|++|.|+++|++|.+||++++|..|
T Consensus 5 i~~isGp~V~-a--~gm~~~---~my~~v~Vg~~~L~gEiI~i~g---d~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELG 75 (588)
T COG1155 5 IIRISGPVVV-A--EGMEGA---KMYDVVKVGEMGLIGEIIRIEG---NRATIQVYEDTAGIRPGEKVENTGRPLSVELG 75 (588)
T ss_pred EEEEECCEEE-E--ecCcCC---ceEEEEEEcCCceeEEEEEEeC---CeEEEEEEeecCCCCCCCeeecCCCceEEEeC
Confidence 4455665542 2 334444 55666666 3478899999888 99999999999999999999999999999999
Q ss_pred CcccceeE--eeeccCCC--------------CCcccch---------------------------hccc---cc-----
Q psy13776 150 SINCGQLI--IGDRQTGK--------------TALAIDT---------------------------IINQ---KR----- 178 (539)
Q Consensus 150 ~~LLGRVv--lG~PiDgk--------------~~i~~~~---------------------------~~~~---~~----- 178 (539)
+.||+.++ +.||++-. +++.-+. .++. +|
T Consensus 76 PGll~~IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~ 155 (588)
T COG1155 76 PGLLKSIYDGIQRPLDVIKETSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSG 155 (588)
T ss_pred ccHHhhhhhhccChHHHHHHHhhhHhhcCCCCCCCCcccccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCce
Confidence 99999999 98987431 0010000 0000 00
Q ss_pred -----------------------------------------cccccccccccccccceeeeeeeeccccceeeeeccCCC
Q psy13776 179 -----------------------------------------KKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQT 217 (539)
Q Consensus 179 -----------------------------------------~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gt 217 (539)
+..+++.|++||.||+|+||+|+|+.||...+|.|+.|+
T Consensus 156 ~v~~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~rp~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGs 235 (588)
T COG1155 156 KVTWIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKARPVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGS 235 (588)
T ss_pred EEEEEecCCCceeeEEEEEEecCCCeEEEEEEEeccccCCccccccCCCCCcccccceeehhhcccccCccccccCCCCC
Confidence 001223569999999999999999999999999999999
Q ss_pred CchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHH
Q psy13776 218 GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVA 297 (539)
Q Consensus 218 GKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~ 297 (539)
|||.+- . .++|++++ .++||++||||+.|++
T Consensus 236 GKTV~q-h----------------------------------------~laK~sda--------diVVyigCGERGNEmt 266 (588)
T COG1155 236 GKTVSQ-H----------------------------------------TLSKLADG--------DIVIYVGCGERGNEMT 266 (588)
T ss_pred CcEehh-h----------------------------------------hhhhhccC--------CEEEEEecCCccchHH
Confidence 999984 1 12333333 3899999999999999
Q ss_pred HHHHHHhc-------CCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCC
Q psy13776 298 QIVKRLTD-------SGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRR 370 (539)
Q Consensus 298 e~~~~l~~-------~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lge 370 (539)
|++.++.+ ...|+||++|++||++|.+.|+.+.|+|.|+||||||+|+||+++.||.+|||+|.||||..|+|
T Consensus 267 evL~eFPeL~Dp~tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAEAlREisgRleE 346 (588)
T COG1155 267 EVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEE 346 (588)
T ss_pred HHHHhCccccCCCCCCcccceeeEeecCccchHHHhhhhhhhhhhHHHHHHhhhhhhHHhhchHHHHHHHHHHHhccccc
Confidence 99999754 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhhchhHHHHhhhcccCCCC-C--ccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCC
Q psy13776 371 PPGREAYPGDVFYLHSRLLERSAKMSEAHG-G--GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALN 447 (539)
Q Consensus 371 pP~r~gyPg~vf~~~srLlERag~~~~~~g-~--GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~ 447 (539)
+|+.+|||.++-+.++++|||||+.....+ . ||+|.++.|..++||+|+|+..|+..+.--.+-||++||++.
T Consensus 347 mPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~r---- 422 (588)
T COG1155 347 MPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRR---- 422 (588)
T ss_pred CCcccccchHHHHHHHHHHHhcCeeeecCCCcceEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcc----
Confidence 999999999999999999999999886422 3 999999999999999999999999999999999999999999
Q ss_pred CCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHHHHh
Q psy13776 448 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAMKQT 520 (539)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~~~~ 520 (539)
||||||.+.|.|..-+....--.+.+
T Consensus 423 -----------------------------------------------hfPaInwl~syS~Y~~~~~~~~~~~v 448 (588)
T COG1155 423 -----------------------------------------------HFPSINWLNSYSLYTEDLRSWYDENV 448 (588)
T ss_pred -----------------------------------------------cCcccChHHHHHHHHHHHHHHhhccc
Confidence 69999999999987765543333333
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=2.5e-50 Score=403.53 Aligned_cols=233 Identities=20% Similarity=0.279 Sum_probs=214.0
Q ss_pred ceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHH
Q psy13776 194 IKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVA 273 (539)
Q Consensus 194 IraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~ 273 (539)
.|+||+|+|||+|||++|||++|+|||||+ .+|+|+...
T Consensus 4 ~~~id~~~~i~~Gqr~~I~G~~G~GKTTLl-r~I~n~l~~---------------------------------------- 42 (249)
T cd01128 4 TRVVDLFAPIGKGQRGLIVAPPKAGKTTLL-QSIANAITK---------------------------------------- 42 (249)
T ss_pred hhheeeecccCCCCEEEEECCCCCCHHHHH-HHHHhcccc----------------------------------------
Confidence 599999999999999999999999999998 677766532
Q ss_pred hhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecC
Q psy13776 274 YRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDD 353 (539)
Q Consensus 274 ~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~Ds 353 (539)
++.+++|+++.||+|++++.+|++.+ ++++|++++++|+..|+.+++.++++||||+++|++|++++|+
T Consensus 43 ----~~fdv~~~v~vI~er~~ev~el~~~I-------~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDe 111 (249)
T cd01128 43 ----NHPEVYLIVLLIDERPEEVTDMQRSV-------KGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDS 111 (249)
T ss_pred ----ccCCeEEEEEEccCCCccHHHHHHHh-------ccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 01246778888999999999999998 6799999999999999999999999999999999999999999
Q ss_pred hhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEee-CCCcCCcccccccccccee
Q psy13776 354 LSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQ-AGDVSAYIPTNVISITDGQ 432 (539)
Q Consensus 354 lTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~-~~D~s~pIp~~~~sitDGq 432 (539)
+||||+||||+++..|+|| ..||||++|+.+++++|||+.+. ++||||+|||++++ +++++|||++++++++|||
T Consensus 112 i~r~a~a~~ev~~~~G~~~-sgG~~~~~~~~~~q~~~~Ar~~~---~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~ 187 (249)
T cd01128 112 ITRLARAYNTVVPPSGKIL-SGGVDANALHKPKRFFGAARNIE---EGGSLTIIATALVDTGSRMDDVIFEEFKGTGNME 187 (249)
T ss_pred HHHhhhhhhhccccCCCCC-CCCcChhhhhhhHHHHHHhcCCC---CCCceEEeeeheecCCCcccchHHHHHhcCCCcE
Confidence 9999999999999999999 69999999999999999999853 37999999999999 6788889999999999999
Q ss_pred EEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchh
Q psy13776 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAA 512 (539)
Q Consensus 433 IvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~ 512 (539)
|+|||+|+..| +||||||..|.||+++..
T Consensus 188 ivls~~la~~~---------------------------------------------------~~paI~vl~s~sr~~~ll 216 (249)
T cd01128 188 LVLDRRLAERR---------------------------------------------------IFPAIDILKSGTRKEELL 216 (249)
T ss_pred EEEchHHhhCC---------------------------------------------------CCCeEEEcCCCCccchhh
Confidence 99999999999 799999999999999998
Q ss_pred hhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 513 QTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 513 ~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
+.+.+ +.+..+|+ +|+.|++.
T Consensus 217 ~~~~~~~~~~~~r~---~~~~~~~~ 238 (249)
T cd01128 217 LDPEELQRMWLLRR---VLSDMDPI 238 (249)
T ss_pred CCHHHHHHHHHHHH---HHHccChH
Confidence 77866 88888888 89999875
No 61
>KOG1352|consensus
Probab=100.00 E-value=2.4e-51 Score=422.76 Aligned_cols=318 Identities=22% Similarity=0.274 Sum_probs=274.1
Q ss_pred hhcccccc-cCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCc--
Q psy13776 94 RSAKMSEA-HGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTAL-- 168 (539)
Q Consensus 94 ~~gEVV~f-~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i-- 168 (539)
...|+|.. +++..|.++.|+. |.+.+++++++.|+..||+|.+||++++|..|++++|.++ +.+|+..-..+
T Consensus 41 aMYELVrVGh~~LvGEiIrleg---D~aTIQVYEeTsG~tVgDpvlrTgkPLsvELGPGimgsIfDGIQRPLk~I~~~s~ 117 (618)
T KOG1352|consen 41 AMYELVRVGHDELVGEIIRLEG---DMATIQVYEETSGLTVGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDISELSQ 117 (618)
T ss_pred HHHHHHHcchHhhhhheeEecC---ceeEEEEEeccCCcccCCchhhcCCcceEeeCcchhhhhhhhhhhhHHHHHHhcC
Confidence 56677766 4567889999999 9999999999999999999999999999999999999999 88887321110
Q ss_pred -------------c-------------------c---------chhcc----ccccc-----------------------
Q psy13776 169 -------------A-------------------I---------DTIIN----QKRKK----------------------- 180 (539)
Q Consensus 169 -------------~-------------------~---------~~~~~----~~~~~----------------------- 180 (539)
. + +.+++ .+|..
T Consensus 118 siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~lpPr~~Gtvt~iAp~G~Y~~~d~vlE~E 197 (618)
T KOG1352|consen 118 SIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILLPPRARGTVTYIAPAGNYTLDDVVLELE 197 (618)
T ss_pred cEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhceeecCCccCceEEEEecCCccccccEEEEEe
Confidence 0 0 00000 00100
Q ss_pred ----------------c--ccc----cccccccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccc
Q psy13776 181 ----------------R--RRL----LKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPL 238 (539)
Q Consensus 181 ----------------r--~ri----~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~ 238 (539)
| +|+ .-+.||.||.|++|+|+||..|....|.|..|||||.|. |
T Consensus 198 f~g~k~~~tmlq~WPVR~pRPv~ekl~an~PLltGQRvLDalfPcVqGGTtaIPGAFGCGKTVIS------Q-------- 263 (618)
T KOG1352|consen 198 FDGEKTKFTMLQTWPVRQPRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVIS------Q-------- 263 (618)
T ss_pred ecCceeeEEEEEecccCCCcchhhccCCCCcccccchHHHhhcchhcCCccccCcccccchHHHH------H--------
Confidence 0 111 128999999999999999999999999999999999996 2
Q ss_pred cccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhc---------CCCC
Q psy13776 239 QYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTD---------SGAM 309 (539)
Q Consensus 239 ~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~---------~~~~ 309 (539)
.|.+|++. ..+|||.||||+.|+.|++.++.+ ...|
T Consensus 264 -sLSKYSNS----------------------------------D~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiM 308 (618)
T KOG1352|consen 264 -SLSKYSNS----------------------------------DAIIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIM 308 (618)
T ss_pred -HHhhccCC----------------------------------CeEEEEcccccchhHHHHHHhChhhEEecCCcchhhh
Confidence 23345443 378999999999999999998754 5679
Q ss_pred ceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHH
Q psy13776 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 389 (539)
Q Consensus 310 ~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLl 389 (539)
+||.+|++|+++|.+.|..+.|++.|++|||||+|+||-.+.||.+|||+|+||||..|.|+|.-.|||.++-.+++.+|
T Consensus 309 KRT~LVANTSNMPVAAREASIYTGITlsEYfRDmG~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFY 388 (618)
T KOG1352|consen 309 KRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFY 388 (618)
T ss_pred hhhhhhhcCCCCchhhhhhhhhhcccHHHHHHhcCcceeeeecchhHHHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCC---CCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEecccccccc
Q psy13776 390 ERSAKMSEA---HGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKE 466 (539)
Q Consensus 390 ERag~~~~~---~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~ 466 (539)
||||++.+. ...||+|++..|..|+||++||+...+.+|..-.|-||.+||++.
T Consensus 389 ERAG~vkcLGsP~ReGsVsIVgAVSPpGGDFsDPVTsATLgIvQVFWGLDKKLAQRK----------------------- 445 (618)
T KOG1352|consen 389 ERAGRVKCLGSPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK----------------------- 445 (618)
T ss_pred HhcCceeecCCCCcCceeEEEEeecCCCCCcCCcchhhhhheeeehhcccHHHHhhc-----------------------
Confidence 999999863 237999999999999999999999999999999999999999999
Q ss_pred cceeeeccceeecccccccchhhccccCCCccccccccccccCchhhh
Q psy13776 467 GDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQT 514 (539)
Q Consensus 467 ~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~ 514 (539)
|||.||.+.|.|.-+.+.+.
T Consensus 446 ----------------------------HFPSiNwliSYSkY~~aL~~ 465 (618)
T KOG1352|consen 446 ----------------------------HFPSINWLISYSKYMRALDP 465 (618)
T ss_pred ----------------------------cCCccchhhhHHHHHHHHHH
Confidence 69999999999998887654
No 62
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=4.3e-37 Score=313.44 Aligned_cols=302 Identities=18% Similarity=0.237 Sum_probs=231.4
Q ss_pred CcEEEEccc-CCcCCCCCCEEEEecccccccCCCcccc--eeE--eeeccC-CCCCcccchhccccccccccc-cccccc
Q psy13776 118 GDVSAYIPT-NVISITDGQIFLETELFYKVDRGSINCG--QLI--IGDRQT-GKTALAIDTIINQKRKKRRRL-LKYNLL 190 (539)
Q Consensus 118 d~v~l~~~g-~~~gi~~G~~V~~tg~~~~VpVG~~LLG--RVv--lG~PiD-gk~~i~~~~~~~~~~~~r~ri-~~~epl 190 (539)
+.+.+.+-. -..+++.||.|...-+..+ -|+.+.+ +|- .|+|.+ -+..+.++.+.+.-|+.+-.+ .....-
T Consensus 80 ~DiYvSpSQIRrf~LrtGD~v~G~vR~Pk--e~Ery~aLl~ve~vN~~~pe~~~~R~~F~~LTPlyP~erl~LE~~~~~~ 157 (422)
T COG1158 80 DDIYVSPSQIRRFNLRTGDTVEGKVRPPK--EGERYFALLKVEAVNGDDPEKAKNRVLFENLTPLYPNERLKLERENGST 157 (422)
T ss_pred CceEECHHHHhhccCccCCEEeeeecCCC--cccceeeeEEEeecCCCCHHHhhccCCcccCCCCCCcceeeeecCCCcc
Confidence 335554432 2457889999877655433 3444332 221 333321 112222333333223333333 112221
Q ss_pred cccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhH
Q psy13776 191 SAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQ 270 (539)
Q Consensus 191 ~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~ 270 (539)
.---|+||.+.|||+|||.+|.+|+.+|||+|+ ..|+|....
T Consensus 158 ~ls~RviDL~~PIGkGQR~LIVAPPkaGKT~lL-q~IA~aIt~------------------------------------- 199 (422)
T COG1158 158 DLSTRVIDLISPIGKGQRGLIVAPPKAGKTTLL-QNIANAITT------------------------------------- 199 (422)
T ss_pred cchhHHHhhhcccCCCceeeEecCCCCCchHHH-HHHHHHHhc-------------------------------------
Confidence 223489999999999999999999999999998 567765532
Q ss_pred HHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEE
Q psy13776 271 AVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALII 350 (539)
Q Consensus 271 a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli 350 (539)
|+++++.++++|+||++||+++.+..++ .||++|.|+||..|...+.+.+.-|..+.++|+||+|+
T Consensus 200 -------N~Pe~~LiVLLIDERPEEVTdmqrsV~g-------eViaSTFDepp~~HvqVAE~viEkAKRlVE~~kDVVIL 265 (422)
T COG1158 200 -------NHPECELIVLLIDERPEEVTDMQRSVKG-------EVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVIL 265 (422)
T ss_pred -------CCCceEEEEEEecCCchHHHHHHHhhcc-------eEEeecCCCcchhhHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 5678899999999999999999999863 79999999999999999999999999999999999999
Q ss_pred ecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCC-CcCCcccccccccc
Q psy13776 351 YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAG-DVSAYIPTNVISIT 429 (539)
Q Consensus 351 ~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~-D~s~pIp~~~~sit 429 (539)
+||+||+|+||+.+.-..|+..+ .|--+.-++.-.|++--|.++. .|||+|+++|.+++.| .|++.|.++++++.
T Consensus 266 LDSITRLaRAYN~v~P~SGkvLs-GGvD~nAL~~PKrFFGAARNIE---eGGSLTIiATALVdTGSrMDeVIfEEFKGTG 341 (422)
T COG1158 266 LDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNIE---EGGSLTIIATALVDTGSRMDEVIFEEFKGTG 341 (422)
T ss_pred ehhHHHHHHHhcccCCCCCCeec-CCcChhhhcCchhhhhhhhccc---cCcchhhhhhhhhhcCCccchhhhhhhcCCC
Confidence 99999999999999988888776 3433344455555555555543 4999999999999976 99999999999999
Q ss_pred ceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccC
Q psy13776 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVG 509 (539)
Q Consensus 430 DGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~ 509 (539)
+.+|+|||+|++++ +|||||+.+|.+|-.
T Consensus 342 NmEl~LdR~laerR---------------------------------------------------ifPAIdi~kSGTRKE 370 (422)
T COG1158 342 NMELHLDRKLAERR---------------------------------------------------IFPAIDINKSGTRKE 370 (422)
T ss_pred ceEEEEhhhhhhcc---------------------------------------------------cccceecccCCcchH
Confidence 99999999999999 799999999999999
Q ss_pred chhhhHHH-HHhhhhhhHHH
Q psy13776 510 SAAQTRAM-KQTGKIRSWNG 528 (539)
Q Consensus 510 ~~~~~~~~-~~~~~~r~~~~ 528 (539)
.-...+.. +++-.+|+++.
T Consensus 371 eLLl~~~~l~k~w~lRr~l~ 390 (422)
T COG1158 371 ELLLSPDELQKMWVLRRILS 390 (422)
T ss_pred hhcCCHHHHHHHHHHHHHhc
Confidence 99888877 99999999665
No 63
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=99.30 E-value=6.4e-13 Score=141.22 Aligned_cols=55 Identities=71% Similarity=1.043 Sum_probs=53.7
Q ss_pred hccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCC
Q psy13776 441 YKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGI 495 (539)
Q Consensus 441 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~ 495 (539)
-+|++||||.|+||+++||++..|+|||.|||||++++||||+.+||||||+||.
T Consensus 59 v~G~alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~~Vpvg~~llGRVVn~lG~ 113 (504)
T COG0056 59 VKGMALNLEEDSVGAVILGDYSDIKEGDEVKRTGRILEVPVGEELLGRVVDALGN 113 (504)
T ss_pred cEEEEEeccccceeEEEecCCccccCCcEEEeeCceEEEecchhhcceeecCCCC
Confidence 4799999999999999999999999999999999999999999999999999996
No 64
>KOG1353|consensus
Probab=99.14 E-value=1.6e-11 Score=122.89 Aligned_cols=55 Identities=73% Similarity=0.952 Sum_probs=53.3
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCC
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIR 496 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~ 496 (539)
+|+++|||+++||+++||+++.|+||++||+||.|++|||++.+||||+|+||.+
T Consensus 53 Kgmalnle~~~vg~v~~g~d~~ikeg~~VkrTgaIvDVpvg~~LlgrvvdAlGn~ 107 (340)
T KOG1353|consen 53 KGMALNLEGENVGVVVFGEDSLIKEGDTVKRTAAISDVPPLKALLGRVGCALGEP 107 (340)
T ss_pred cchhccccCCceEEEEEcCcceeccCceEEeeeeeeccCchHHHhhhhhhhhcCe
Confidence 7899999999999999999999999999999999999999999999999999943
No 65
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.08 E-value=4.9e-09 Score=94.40 Aligned_cols=160 Identities=32% Similarity=0.423 Sum_probs=119.8
Q ss_pred eeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEe
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVA 288 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~ 288 (539)
.+|+|++|+|||+++ ..++.+... ++..++|+.
T Consensus 2 ~~i~G~~G~GKT~l~-~~i~~~~~~----------------------------------------------~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLA-LQLALNIAT----------------------------------------------KGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHH-HHHHHHHHh----------------------------------------------cCCEEEEEE
Confidence 579999999999998 445544321 123577888
Q ss_pred eccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhcc
Q psy13776 289 IGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLL 368 (539)
Q Consensus 289 IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~l 368 (539)
..+..+...+....+......++..++....+........ .+++++....+..++|+|+++.+.....+.
T Consensus 35 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lviDe~~~~~~~~~~~---- 104 (165)
T cd01120 35 IEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL------SKAERLRERGGDDLIILDELTRLVRALREI---- 104 (165)
T ss_pred CCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHH------HHHHHHHhCCCCEEEEEEcHHHHHHHHHHH----
Confidence 7877777666555555556666766776666555444332 567788888888899999999999876553
Q ss_pred CCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCc----cccccccccceeEEeeh
Q psy13776 369 RRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAY----IPTNVISITDGQIFLET 437 (539)
Q Consensus 369 gepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~p----Ip~~~~sitDGqIvLsr 437 (539)
..+++..+...+.+|++++.+ ..+|.+.+.....++..+| .++.+..+.|+-|+|+|
T Consensus 105 -----~~~~~~~~~~~l~~l~~~~~~-------~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 105 -----REGYPGELDEELRELLERARK-------GGVTVIFTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred -----HhcCChHHHHHHHHHHHHHhc-------CCceEEEEEecCCccccCcccccCccceeeecceEEEEeC
Confidence 356777777788888888754 5889999999998888888 88999999999999986
No 66
>PTZ00185 ATPase alpha subunit; Provisional
Probab=98.68 E-value=6.1e-09 Score=114.03 Aligned_cols=57 Identities=35% Similarity=0.695 Sum_probs=54.4
Q ss_pred ccCcCCCCCC-CcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 442 KGMALNLEPD-NVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 442 ~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
.|+++|||+| ++++++||+...|++||.|++||++++||||+++||||||+|| .|--
T Consensus 79 ~G~vlnl~~d~~v~~v~lg~~~gI~~G~~V~~tg~~~~VpVG~~lLGRVvD~lG-~PID 136 (574)
T PTZ00185 79 AGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLG-HEVP 136 (574)
T ss_pred EEEEEEecCCCeEEEEEecCccCCCCCCEEEECCCccEEECCcccccCEECCCC-cccC
Confidence 6999999999 6999999999999999999999999999999999999999999 6653
No 67
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=98.40 E-value=8.7e-08 Score=105.10 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=54.7
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.|.++|++.+++++++||+...|++||.|++||++++||||+++||||||+|| .|--+
T Consensus 36 ~g~V~~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~lLGRVvd~lG-~piDg 93 (507)
T PRK07165 36 KAFVISATEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEYFGKIIDIDG-NIIYP 93 (507)
T ss_pred EEEEEEEeCCeEEEEEccCccCCCCCCEEEECCCccEEECCccccCCEECCCC-cccCC
Confidence 67999999999999999999999999999999999999999999999999999 66543
No 68
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=98.24 E-value=3.4e-07 Score=100.10 Aligned_cols=57 Identities=54% Similarity=0.875 Sum_probs=54.0
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
.|.++|++.+++++++||+...|++||.|++||+.++||||+++||||||+|| .|--
T Consensus 39 ~g~vi~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGRVvd~lG-~piD 95 (485)
T CHL00059 39 IGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVVNALA-KPID 95 (485)
T ss_pred EEEEEEEcCCEEEEEEeeCCCCCCCCCEEEECCCcceEEcCHhhcCCEECCCC-CeeC
Confidence 67999999999999999999999999999999999999999999999999999 5543
No 69
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=98.20 E-value=4.9e-07 Score=99.42 Aligned_cols=58 Identities=48% Similarity=0.828 Sum_probs=54.3
Q ss_pred hccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 441 YKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 441 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
-.|.++||+.+.+++++||+...|++|+.|++||+.++||||+++||||||+|| .|--
T Consensus 59 ~~g~V~~l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGRVid~lG-~piD 116 (502)
T PRK13343 59 SRGFAFNLEEELVGAVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLG-RPLD 116 (502)
T ss_pred cEEEEEEecCCeEEEEEeeCCCCCCCCCEeEecCCcceeecCHHhcCCEECCCC-Cccc
Confidence 367899999999999999999999999999999999999999999999999999 5543
No 70
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=98.16 E-value=6.7e-07 Score=98.15 Aligned_cols=57 Identities=54% Similarity=0.940 Sum_probs=54.0
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
.|.++||+.+++++++||+...|++|+.|++||+.+.||||+++||||+|+|| .|--
T Consensus 60 ~g~Vi~l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGRVvd~lG-~PiD 116 (497)
T TIGR03324 60 LGIAFNVDEDEVGVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLG-RPLD 116 (497)
T ss_pred EEEEEEEcCCeEEEEEecCCcCCcCCCEEEECCCCCeEECCHhhCcCEECCCC-CCcC
Confidence 67899999999999999999999999999999999999999999999999999 5543
No 71
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.96 E-value=2.7e-05 Score=76.33 Aligned_cols=176 Identities=22% Similarity=0.233 Sum_probs=98.8
Q ss_pred ccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhh
Q psy13776 190 LSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDL 267 (539)
Q Consensus 190 l~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~ 267 (539)
+.|||..+|-++ -+-+|.-.+|.|++|+|||++++..+.++... .
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~---------------------~------------ 47 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKN---------------------F------------ 47 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---------------------H------------
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhh---------------------c------------
Confidence 369999999999 78899999999999999999997655554321 0
Q ss_pred hhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCC-------CceEEEEEecCCCChhhhhhhhHHHHHHHHHH
Q psy13776 268 SKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGA-------MGYTIIVSATASDAAPLQYLAPYSGCAMGEFF 340 (539)
Q Consensus 268 ~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~-------~~~tvvV~atad~~a~~r~~ap~~a~tiAEyF 340 (539)
+-.|+|+..-+..+++.+-.+.+ |. ..+-.++-......-....-.-...-.+.+.+
T Consensus 48 -------------ge~vlyvs~ee~~~~l~~~~~s~---g~d~~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i 111 (226)
T PF06745_consen 48 -------------GEKVLYVSFEEPPEELIENMKSF---GWDLEEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAI 111 (226)
T ss_dssp -------------T--EEEEESSS-HHHHHHHHHTT---TS-HHHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHH
T ss_pred -------------CCcEEEEEecCCHHHHHHHHHHc---CCcHHHHhhcCCEEEEecccccccccccCHHHHHHHHHHHH
Confidence 12589999988776665554443 21 11233433332211000112222334556666
Q ss_pred HHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCc
Q psy13776 341 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAY 420 (539)
Q Consensus 341 rd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~p 420 (539)
.+.+. -.+++||+|-+ .++.. |......+-.|.....+ . .+|++.+.+++.+.-.+.
T Consensus 112 ~~~~~-~~vVIDsls~l-~~~~~--------------~~~~r~~l~~l~~~l~~------~-~~t~llt~~~~~~~~~~~ 168 (226)
T PF06745_consen 112 EELKP-DRVVIDSLSAL-LLYDD--------------PEELRRFLRALIKFLKS------R-GVTTLLTSEMPSGSEDDG 168 (226)
T ss_dssp HHHTS-SEEEEETHHHH-TTSSS--------------GGGHHHHHHHHHHHHHH------T-TEEEEEEEEESSSSSSSS
T ss_pred HhcCC-CEEEEECHHHH-hhcCC--------------HHHHHHHHHHHHHHHHH------C-CCEEEEEEccccCccccc
Confidence 66555 57889999988 32211 11111223344444432 1 347788887654321211
Q ss_pred ccccccc-ccceeEEeehh
Q psy13776 421 IPTNVIS-ITDGQIFLETE 438 (539)
Q Consensus 421 Ip~~~~s-itDGqIvLsr~ 438 (539)
-..+.. +.||-|.|+..
T Consensus 169 -~~~i~~~l~D~vI~L~~~ 186 (226)
T PF06745_consen 169 -TFGIEHYLADGVIELRYE 186 (226)
T ss_dssp -STSHHHHHSSEEEEEEEE
T ss_pred -ccchhhhcccEEEEEEEE
Confidence 123334 89999999865
No 72
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=97.96 E-value=3.9e-06 Score=92.60 Aligned_cols=58 Identities=59% Similarity=0.961 Sum_probs=54.5
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.|.+++++.+.+++++||+...+++|+.|++||+.++||||+++||||+|+|| .|--+
T Consensus 59 ~g~Vi~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~vg~~llGRV~d~~G-~pld~ 116 (501)
T TIGR00962 59 QGIALNLEEDSVGAVIMGDYSNIREGSTVKRTGRILKVPVGDGLLGRVVNALG-QPIDG 116 (501)
T ss_pred EEEEEEecCCeEEEEEecCCcCCCCCCeeEecCCccEEecChHhcCCEeCCCC-CeeCC
Confidence 67899999999999999999999999999999999999999999999999999 66543
No 73
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.88 E-value=0.00021 Score=71.93 Aligned_cols=182 Identities=20% Similarity=0.258 Sum_probs=112.5
Q ss_pred ccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhh
Q psy13776 188 NLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYD 265 (539)
Q Consensus 188 epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d 265 (539)
+.+.|||.-+|-++- +-+|.-.+|.|++|+|||++++..+.++...
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-------------------------------- 50 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE-------------------------------- 50 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--------------------------------
Confidence 567899999999998 7799999999999999999997666655432
Q ss_pred hhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHH-------hcCCCCceEEEEEecCCCChhh------hhhhhHH
Q psy13776 266 DLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPL------QYLAPYS 332 (539)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l-------~~~~~~~~tvvV~atad~~a~~------r~~ap~~ 332 (539)
+--|+|+..-|...++.+-.+.+ .+.+. -.++-+.+...+.. -......
T Consensus 51 ---------------ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~---l~i~d~~~~~~~~~~~~~~~~~~~~~l 112 (260)
T COG0467 51 ---------------GEPVLYVSTEESPEELLENARSFGWDLEVYIEKGK---LAILDAFLSEKGLVSIVVGDPLDLEEL 112 (260)
T ss_pred ---------------CCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCC---EEEEEccccccccccccccCCccHHHH
Confidence 12599999999999998877642 22222 12222222222211 1233445
Q ss_pred HHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEe
Q psy13776 333 GCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIET 412 (539)
Q Consensus 333 a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~ 412 (539)
.-.+-+.+.+.+ ...+++||+|.+...+..-.. + -..+..+.++++ ..| .|++.+...
T Consensus 113 ~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~~~~----------~-r~~~~~l~~~~~---------~~~-~t~~~~~~~ 170 (260)
T COG0467 113 LDRIREIVEKEG-ADRVVIDSITELTLYLNDPAL----------V-RRILLLLKRFLK---------KLG-VTSLLTTEA 170 (260)
T ss_pred HHHHHHHHHHhC-CCEEEEeCCchHhhhcCchHH----------H-HHHHHHHHHHHH---------hCC-CEEEEEecc
Confidence 566667777777 667789999976654321110 0 011122333332 134 787766654
Q ss_pred eCCCcCCccccccccccceeEEeehhHHhcc
Q psy13776 413 QAGDVSAYIPTNVISITDGQIFLETELFYKG 443 (539)
Q Consensus 413 ~~~D~s~pIp~~~~sitDGqIvLsr~La~~g 443 (539)
..+..... ...-++.||.|.|+....+-+
T Consensus 171 ~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~ 199 (260)
T COG0467 171 PVEERGES--GVEEYIVDGVIRLDLKEIEGG 199 (260)
T ss_pred cccCCCcc--ceEEEEEEEEEEEeeecccCc
Confidence 33222211 234458999999999877755
No 74
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=97.82 E-value=6.8e-06 Score=90.77 Aligned_cols=58 Identities=64% Similarity=0.979 Sum_probs=54.4
Q ss_pred hccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 441 YKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 441 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
-.|.+++++.+.+++.+||+...+..|+.|+.||+.++||||+++||||+|+|| .|--
T Consensus 59 ~~g~Vi~~~~~~~~~~~~~~~~gi~~g~~V~~~~~~~~v~vg~~llGrv~d~~G-~pid 116 (502)
T PRK09281 59 VYGIALNLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLG-QPID 116 (502)
T ss_pred cEEEEEEEcCCeEEEEEecCcccccCCCeeeecCCceEEecCHHhcCCEEccCC-CCcC
Confidence 367899999999999999999999999999999999999999999999999999 5544
No 75
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=97.75 E-value=3.2e-05 Score=62.59 Aligned_cols=63 Identities=10% Similarity=-0.084 Sum_probs=49.9
Q ss_pred ccCceeeecCCe----eEEccchhhhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEec
Q psy13776 73 RPPGREAYPGDV----FYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETE 141 (539)
Q Consensus 73 e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg 141 (539)
+..|+++.+.++ +++.+. ...|..+|.+...|+++++++ |.+.+++|+++.||++|++|++||
T Consensus 3 ~v~G~vv~v~~~~~~~~g~~~~---~~~~~~~~~~~~~~~Vv~~~~---~~v~~~~~~~t~Gl~~G~~V~~tG 69 (69)
T PF02874_consen 3 QVVGPVVEVEFGPGVLPGIGEA---VEVELVDFGNGVLGEVVGLDE---DEVRLQVFGSTDGLSRGTEVRFTG 69 (69)
T ss_dssp EEECTEEEEECSEEEEEETTTE---EEEEEEEETTEEEEEEEEEET---TEEEEEESSSGTTSBTTCEEEEEE
T ss_pred cccceEEEEEcCCCCCCCccEE---EEEecccceeeeeeeecccCc---cEEEEEEecCCCCCCCCCEEEcCc
Confidence 345666666444 344434 566666778888999999999 999999999999999999999996
No 76
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.70 E-value=0.00032 Score=68.29 Aligned_cols=40 Identities=35% Similarity=0.567 Sum_probs=33.8
Q ss_pred ccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 190 LSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 190 l~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.||+..+|-++. +.+|.=..|+|++|+|||++++..+.+
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~ 42 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE 42 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4699999999985 677888999999999999999654443
No 77
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.64 E-value=0.00046 Score=76.17 Aligned_cols=174 Identities=20% Similarity=0.160 Sum_probs=99.4
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhh
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIY 264 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~ 264 (539)
.+.+.|||..+|.++. +-+|.-.+|.|++|+|||+++...+.+....
T Consensus 252 ~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~------------------------------- 300 (509)
T PRK09302 252 NERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRR------------------------------- 300 (509)
T ss_pred cccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhC-------------------------------
Confidence 6678999999999986 7789999999999999999996544433211
Q ss_pred hhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHH-------hcCCCCceEEEEEecCCCChhhhhhhhHHHHHHH
Q psy13776 265 DDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMG 337 (539)
Q Consensus 265 d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l-------~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiA 337 (539)
+-.|+|+..-+..+++.+-.+.+ .+.+ +..++... |..... --....+.
T Consensus 301 ----------------g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g---~l~i~~~~---~~~~~~--~~~~~~i~ 356 (509)
T PRK09302 301 ----------------GERCLLFAFEESRAQLIRNARSWGIDLEKMEEKG---LLKIICAR---PESYGL--EDHLIIIK 356 (509)
T ss_pred ----------------CCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcC---CceeecCC---cccCCH--HHHHHHHH
Confidence 12477887777655554433332 1111 12233221 111100 01112333
Q ss_pred HHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCc
Q psy13776 338 EFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 417 (539)
Q Consensus 338 EyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~ 417 (539)
+...+.+.+ ++|+||+|-+..... +..+-..+.+|...+.+ -.+|.+.|.+++....
T Consensus 357 ~~i~~~~~~-~vVIDslt~l~~~~~---------------~~~~~~~l~~l~~~~k~-------~~~t~l~t~~~~~~~g 413 (509)
T PRK09302 357 REIEEFKPS-RVAIDPLSALARGGS---------------LNEFRQFVIRLTDYLKS-------EEITGLFTNLTPDFMG 413 (509)
T ss_pred HHHHHcCCC-EEEEcCHHHHHHhCC---------------HHHHHHHHHHHHHHHHh-------CCCeEEEEeccccccC
Confidence 333344445 789999998865321 00111122233333322 2358888877765322
Q ss_pred CCcc-ccccccccceeEEeehh
Q psy13776 418 SAYI-PTNVISITDGQIFLETE 438 (539)
Q Consensus 418 s~pI-p~~~~sitDGqIvLsr~ 438 (539)
.+.. +..+.++.||-|.|+..
T Consensus 414 ~~~~~~~~~~~l~D~vI~L~~~ 435 (509)
T PRK09302 414 SHSITESHISSLTDTWILLQYV 435 (509)
T ss_pred CCCCCcCceEEeeeEEEEEEEe
Confidence 2222 34578999999999864
No 78
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=97.63 E-value=2e-05 Score=86.23 Aligned_cols=56 Identities=38% Similarity=0.647 Sum_probs=52.8
Q ss_pred ccCcCCCCCCCcccEEeccccccc-ccceeeeccceeecccccccchhhccccCCCcc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIK-EGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPA 498 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pa 498 (539)
.|.+++++.|++.+.+|++...++ .|+.|..||+.+.||||+++||||+|+|| +|-
T Consensus 40 ~geVi~~~~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~V~vg~~lLGRVvD~~G-~Pl 96 (460)
T PRK04196 40 RGQVLEVSEDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVSEDMLGRIFDGLG-RPI 96 (460)
T ss_pred EEEEEEEeCCeEEEEEccCCCCCCCCCCEEEeCCCccEEEcCcccccCEECccC-CCc
Confidence 367889999999999999999999 99999999999999999999999999999 564
No 79
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.53 E-value=0.00027 Score=60.44 Aligned_cols=89 Identities=20% Similarity=0.143 Sum_probs=49.0
Q ss_pred CChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCC
Q psy13776 321 DAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHG 400 (539)
Q Consensus 321 ~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g 400 (539)
.....+...+....+.|++.. ..++++|++.++.............. .. .+.+. . .
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~------------~~-~~~~~-~------~ 113 (148)
T smart00382 58 KASGSGELRLRLALALARKLK----PDVLILDEITSLLDAEQEALLLLLEE------------LR-LLLLL-K------S 113 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcC----CCEEEEECCcccCCHHHHHHHHhhhh------------hH-HHHHH-H------h
Confidence 334445555666666666543 68999999998887666554433322 00 01110 0 0
Q ss_pred CccceeeeEEEeeCCCcCCccccccccccceeEEeeh
Q psy13776 401 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLET 437 (539)
Q Consensus 401 ~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr 437 (539)
...+..+.+... ...+++...+...|.++.+.+
T Consensus 114 ~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~ 146 (148)
T smart00382 114 EKNLTVILTTND----EKDLGPALLRRRFDRRIVLLL 146 (148)
T ss_pred cCCCEEEEEeCC----CccCchhhhhhccceEEEecC
Confidence 123344433332 456667777777787777643
No 80
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.53 E-value=0.002 Score=65.37 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=33.9
Q ss_pred ccccceeeeeee----------------eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 190 LSAGIKAVDSLV----------------PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 190 l~TGIraID~l~----------------pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.|||+.+|.++ -+-+|.-.+|.|++|+|||++++..+.+.
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999986 35589999999999999999997555543
No 81
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.53 E-value=0.00099 Score=66.35 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=35.2
Q ss_pred cccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 189 LLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 189 pl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-+.|||..+|-++. +-+|.-++|.|++|+|||++++..+.++
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~ 45 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG 45 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 36799999999874 6689999999999999999996555544
No 82
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.52 E-value=3.6e-05 Score=83.43 Aligned_cols=58 Identities=24% Similarity=0.243 Sum_probs=53.4
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.|.+++++.+.+.+.+||+...|+.|+.|..||+.++||||+++||||+|+|| +|--+
T Consensus 37 ~~eVv~~~~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~vg~~lLGRViD~lG-~plD~ 94 (418)
T TIGR03498 37 LAEVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSWLGRVINALG-EPIDG 94 (418)
T ss_pred EEEEEEEcCCeEEEEEccCCcCCCCCCEEEECCCccEEEeChhhcCCEECCCC-CccCC
Confidence 35788899999999999999999999999999999999999999999999999 56544
No 83
>PRK04328 hypothetical protein; Provisional
Probab=97.49 E-value=0.0016 Score=65.64 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=35.9
Q ss_pred ccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 188 NLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 188 epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.+.|||..+|-++. +-+|.-.+|.|++|+|||++++..+.+.
T Consensus 3 ~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~ 47 (249)
T PRK04328 3 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNG 47 (249)
T ss_pred ceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999976 4489999999999999999997655543
No 84
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.48 E-value=4.4e-05 Score=82.86 Aligned_cols=57 Identities=33% Similarity=0.461 Sum_probs=52.2
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
.|.+++++.+++.+.+|++...++.|+.|..||+.++||||+++||||+|++| +|--
T Consensus 41 ~~eVi~~~~~~~~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrViD~~G-~plD 97 (422)
T TIGR02546 41 LAEVVGFTGDEALLSPLGELHGISPGSEVIPTGRPLSIRVGEALLGRVLDGFG-RPLD 97 (422)
T ss_pred EEEEEEEcCCcEEEEEccCccCCCCCCEEEECCCCceEEeChhhccCEeCCCC-Cccc
Confidence 45677888999999999999999999999999999999999999999999999 5543
No 85
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.48 E-value=0.0018 Score=63.49 Aligned_cols=39 Identities=33% Similarity=0.520 Sum_probs=33.4
Q ss_pred ccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHH
Q psy13776 190 LSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 190 l~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+.|||..+|-++. +-+|.-++|.|++|+|||+++...+.
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHH
Confidence 5799999999885 66899999999999999999964443
No 86
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.41 E-value=5.4e-05 Score=82.53 Aligned_cols=56 Identities=34% Similarity=0.488 Sum_probs=51.9
Q ss_pred cCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 443 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
|.+++++.+++.+.+||+...++.|+.|+.||+.++||||+++||||+|++| .|--
T Consensus 62 ~eVv~~~~~~~~l~~~~~t~gi~~g~~V~~tg~~~~v~vg~~lLGrV~d~~G-~piD 117 (441)
T PRK09099 62 AEVVGFSRDVALLSPFGELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLG-EPID 117 (441)
T ss_pred EEEEEEECCEEEEEEccCCcCCCCCCEEEeCCCccEEEeccccccCEEcccC-CccC
Confidence 4678889999999999999999999999999999999999999999999999 5543
No 87
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.38 E-value=6.9e-05 Score=81.48 Aligned_cols=88 Identities=22% Similarity=0.225 Sum_probs=66.5
Q ss_pred ccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeeccc
Q psy13776 402 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPV 481 (539)
Q Consensus 402 GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 481 (539)
|-++.+--.+++..-....|-+.+.- .++.+ .+.+.+++.+++.+..||+...++.|+.|+.||+.+.|||
T Consensus 23 g~v~~~~g~~~~~~g~~~~ige~~~i-~~~~~--------~~eV~~~~~~~~~~~~~~~~~gi~~g~~v~~~~~~~~v~v 93 (432)
T PRK06793 23 GKVHSVQEQFFVAKGPKAKIGDVCFV-GEHNV--------LCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPR 93 (432)
T ss_pred eEEEEEEEEEEEEEcCCCCcCCEEEE-CCCCE--------EEEEEEecCCcEEEEEccCccCCCCCCEEEECCCccEEEc
Confidence 55555554444443345555554432 23322 3467889999999999999999999999999999999999
Q ss_pred ccccchhhccccCCCccc
Q psy13776 482 GEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 482 ~~~~l~~v~~~lg~~Pai 499 (539)
|+++||||+|++| .|--
T Consensus 94 g~~~lGrV~d~~G-~piD 110 (432)
T PRK06793 94 GNHLLGKVLSANG-EVLN 110 (432)
T ss_pred CHhhccCEECcCC-ccCC
Confidence 9999999999999 5543
No 88
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=97.36 E-value=6.7e-05 Score=82.18 Aligned_cols=58 Identities=29% Similarity=0.483 Sum_probs=52.8
Q ss_pred ccCcCCCCCCCcccEEecccccccccce-eeeccceeecccccccchhhccccCCCcccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDI-VKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.|.+++++.+++.+.+||+...+..|+. |..||+.++||||+++||||+|++| +|--+
T Consensus 38 ~geVv~~~~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~vg~~lLGRViD~~G-~plD~ 96 (458)
T TIGR01041 38 RGQVLDSSEGLAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSEDMLGRILNGSG-EPIDG 96 (458)
T ss_pred EEEEEEEECCEEEEEEecCCcCcCCCCcEEEECCCceEEEcChhhccCEEccCC-cccCC
Confidence 4577889999999999999999999886 9999999999999999999999999 66544
No 89
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.36 E-value=7e-05 Score=81.77 Aligned_cols=55 Identities=27% Similarity=0.376 Sum_probs=50.1
Q ss_pred cCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 445 ALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
+..++.+.+.+.+||+...++.|+.|+.||+.++||||+++||||+|++| .|--+
T Consensus 69 Vv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGRV~d~~G-~plD~ 123 (451)
T PRK05688 69 VMGFSGDKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAG-RALDG 123 (451)
T ss_pred EEEEcCCEEEEEEccCccCCCCCCEEEECCCccEEEecccccCCEEeccC-ceecC
Confidence 45577889999999999999999999999999999999999999999999 66543
No 90
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.34 E-value=8e-05 Score=80.58 Aligned_cols=57 Identities=30% Similarity=0.479 Sum_probs=51.9
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
.|.+..++.+.+.+.+|++-..++.|+.|..||+.++||||+++||||+|++| .|--
T Consensus 35 ~~eVv~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~llGrVid~~G-~pld 91 (411)
T TIGR03496 35 EAEVVGFRGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLLGRVIDGLG-RPLD 91 (411)
T ss_pred EEEEEEecCCEEEEEEccCccCCCCCCEEEECCCccEEEcchhhcCCEECCCC-CCcC
Confidence 35677888999999999999999999999999999999999999999999999 4543
No 91
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=97.34 E-value=7.9e-05 Score=81.42 Aligned_cols=58 Identities=33% Similarity=0.508 Sum_probs=52.6
Q ss_pred ccCcCCCCCCCcccEEecccccccc-cceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKE-GDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.|.+++++.+.+.+.+||....|.. |+.|..||+.++||||+++||||+|+|| .|--+
T Consensus 38 ~geVi~~~~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v~vg~~lLGRVid~~G-~piD~ 96 (466)
T TIGR01040 38 SGQVLEVSGNKAVVQVFEGTSGIDAKKTTCEFTGDILRTPVSEDMLGRVFNGSG-KPIDK 96 (466)
T ss_pred EEEEEEEeCCeEEEEEcCCCCCcccCCCEEEECCCccEEEcCcccccCEECccc-cccCC
Confidence 3577889999999999999999997 9999999999999999999999999999 55443
No 92
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.31 E-value=0.0024 Score=63.03 Aligned_cols=42 Identities=29% Similarity=0.350 Sum_probs=35.4
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.+.+.|||..+|-++. +-+|.-.+|.|++|+|||+++...+.
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~ 47 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVY 47 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHH
Confidence 5678999999999985 55889999999999999999954333
No 93
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.25 E-value=0.0011 Score=68.43 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=74.9
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhh
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIY 264 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~ 264 (539)
...+.||++.+|.++. +-+|.-..|+|++|+|||++++....|.... ...|
T Consensus 74 ~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~---------~~~g------------------ 126 (310)
T TIGR02236 74 IGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLP---------EEKG------------------ 126 (310)
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC---------cccC------------------
Confidence 3446799999999876 5678888999999999999997554443211 0000
Q ss_pred hhhhhHHHHhhhcccCceEEEEEeecc--chhHHHHHHHHHhc--CCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHH
Q psy13776 265 DDLSKQAVAYRQDEKKKLYCIYVAIGQ--KRSTVAQIVKRLTD--SGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFF 340 (539)
Q Consensus 265 d~~~~~a~~~~~~~~~~~~~Vy~~IGe--r~~ev~e~~~~l~~--~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyF 340 (539)
..+..|||+..-+ +.+.+.++.+.+.- ...+++..++.....++ +. ...-.+.+++
T Consensus 127 --------------~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~~~~~---~~---~lld~l~~~i 186 (310)
T TIGR02236 127 --------------GLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYNSNH---QM---LLVEKAEDLI 186 (310)
T ss_pred --------------CCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecCCHHH---HH---HHHHHHHHHH
Confidence 0112688888776 45555555544311 11234444443332221 11 1122356666
Q ss_pred HHCCC-cEEEEecChhHHHHH
Q psy13776 341 RDNGK-HALIIYDDLSKQAVA 360 (539)
Q Consensus 341 rd~Gk-dVLli~DslTr~A~A 360 (539)
.+.+. --+||+||++-+-+.
T Consensus 187 ~~~~~~~~lVVIDSisa~~r~ 207 (310)
T TIGR02236 187 KELNNPVKLLIVDSLTSHFRA 207 (310)
T ss_pred HhcCCCceEEEEecchHhhhH
Confidence 66443 349999999987543
No 94
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.22 E-value=0.00014 Score=79.47 Aligned_cols=58 Identities=28% Similarity=0.448 Sum_probs=53.1
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.|.+++++.+.+.+.+||+...+..|+.|..||+.++||||+++||||+|++| .|--+
T Consensus 60 ~~eVi~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~llGRVid~~G-~plD~ 117 (440)
T TIGR01026 60 VAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGLLGRVLDGLG-KPIDG 117 (440)
T ss_pred EEEEEEecCCEEEEEEccCCcCCCCCCEEEeCCCccEEEcChhhhhceecCCC-cccCC
Confidence 45778889999999999999999999999999999999999999999999999 55543
No 95
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.21 E-value=0.00013 Score=79.36 Aligned_cols=58 Identities=40% Similarity=0.590 Sum_probs=53.3
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.|.++.++.+++.+.+|++-..++.|+.|..||+.++||||+++||||+|++| .|--+
T Consensus 55 ~~eVv~~~~~~~~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~llGRViD~~G-~plD~ 112 (434)
T PRK08472 55 LGMVVVIEKEQFGISPFSFIEGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLG-RPIDG 112 (434)
T ss_pred EEEEEEEeCCeEEEEEccCCCCCCCCCEEEeCCCceEEEcChhhcCCEECCCC-CcccC
Confidence 45678899999999999999999999999999999999999999999999999 66543
No 96
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.20 E-value=0.0065 Score=67.07 Aligned_cols=174 Identities=19% Similarity=0.113 Sum_probs=100.2
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhh
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIY 264 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~ 264 (539)
.+.+.|||..+|.++- +-+|.-.+|.|++|+|||+|++..+.+....
T Consensus 242 ~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~------------------------------- 290 (484)
T TIGR02655 242 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN------------------------------- 290 (484)
T ss_pred ccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-------------------------------
Confidence 6679999999999874 6689999999999999999996544433221
Q ss_pred hhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCC-----Cc--eEEEEEecCCCChhhhhhhhHHHHHHH
Q psy13776 265 DDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGA-----MG--YTIIVSATASDAAPLQYLAPYSGCAMG 337 (539)
Q Consensus 265 d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~-----~~--~tvvV~atad~~a~~r~~ap~~a~tiA 337 (539)
+-.|+|+.--|..+++..=.+.+ |. .+ +-.++.....+... -..+-.+-
T Consensus 291 ----------------ge~~~y~s~eEs~~~i~~~~~~l---g~~~~~~~~~g~l~~~~~~p~~~~~-----~~~~~~i~ 346 (484)
T TIGR02655 291 ----------------KERAILFAYEESRAQLLRNAYSW---GIDFEEMEQQGLLKIICAYPESAGL-----EDHLQIIK 346 (484)
T ss_pred ----------------CCeEEEEEeeCCHHHHHHHHHHc---CCChHHHhhCCcEEEEEcccccCCh-----HHHHHHHH
Confidence 12588998877666654444333 21 11 12233221111100 11222222
Q ss_pred HHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCc
Q psy13776 338 EFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 417 (539)
Q Consensus 338 EyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~ 417 (539)
+...+.+.+ ++|+||++-+..++.+ +.+ -..+.+|.+-+.+ =.+|.+.|.+++.---
T Consensus 347 ~~i~~~~~~-~vvIDsi~~~~~~~~~-----------~~~----r~~~~~l~~~lk~-------~~it~~~t~~~~~~~~ 403 (484)
T TIGR02655 347 SEIADFKPA-RIAIDSLSALARGVSN-----------NAF----RQFVIGVTGYAKQ-------EEITGFFTNTSDQFMG 403 (484)
T ss_pred HHHHHcCCC-EEEEcCHHHHHHhcCH-----------HHH----HHHHHHHHHHHhh-------CCCeEEEeeccccccc
Confidence 333344555 6789999988654411 111 0112334443222 3578888888765111
Q ss_pred CCccc-cccccccceeEEeehh
Q psy13776 418 SAYIP-TNVISITDGQIFLETE 438 (539)
Q Consensus 418 s~pIp-~~~~sitDGqIvLsr~ 438 (539)
+.+++ ..+-++.|+-|+|...
T Consensus 404 ~~~~~~~~~s~l~D~ii~l~~~ 425 (484)
T TIGR02655 404 SHSITDSHISTITDTILMLQYV 425 (484)
T ss_pred CCccCCCCeeEeeeEEEEEEEE
Confidence 23344 3677899999999643
No 97
>PRK06820 type III secretion system ATPase; Validated
Probab=97.20 E-value=0.00014 Score=79.41 Aligned_cols=58 Identities=28% Similarity=0.444 Sum_probs=53.2
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.|.++.++.+++.+.+|++-+.|+.|+.|..||+.++||||+++||||+|++| +|--+
T Consensus 62 ~~eVv~~~~~~~~l~~~~~~~gi~~g~~v~~tg~~~~v~vg~~llGrv~d~~G-~pld~ 119 (440)
T PRK06820 62 LAEVVSIEQEMALLSPFASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLG-APIDG 119 (440)
T ss_pred EEEEEEEeCCeEEEEEccCccCCCCCCEEEECCCCcEEEechhhcCCEECccC-CccCC
Confidence 45778899999999999999999999999999999999999999999999999 56443
No 98
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=97.16 E-value=0.00016 Score=79.66 Aligned_cols=54 Identities=35% Similarity=0.478 Sum_probs=48.4
Q ss_pred CCCCC-CCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 446 LNLEP-DNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 446 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
..++. +.+.++.||+...|+.|+.|..||+.+.||||+++||||+|+|| .|--+
T Consensus 62 vg~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~lLGRVid~~G-~piDg 116 (494)
T CHL00060 62 QQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLG-EPVDN 116 (494)
T ss_pred EEEeCCCeEEEEeccCccCCCCCCEEEeCCCcceeecchhhcCCEEeecC-cccCC
Confidence 34455 89999999999999999999999999999999999999999999 66543
No 99
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.15 E-value=0.00016 Score=78.89 Aligned_cols=54 Identities=31% Similarity=0.530 Sum_probs=48.6
Q ss_pred cCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 445 ALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
+..++.+++-+..||+...++.|+.|..||+.++||||+++||||+|+|| .|--
T Consensus 59 Vi~~~~~~~~l~~~~~~~gl~~g~~V~~tg~~~~v~vg~~llGRv~d~~G-~plD 112 (438)
T PRK07721 59 VVGFKDEHVLLMPYTEVAEIAPGCLVEATGKPLEVKVGSGLIGQVLDALG-EPLD 112 (438)
T ss_pred EEEEcCCEEEEEEccCccCCCCCCEEEECCCccEEEechhhcCCEECcCC-CccC
Confidence 45566778889999999999999999999999999999999999999999 6654
No 100
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=97.14 E-value=0.00019 Score=78.03 Aligned_cols=56 Identities=38% Similarity=0.580 Sum_probs=51.2
Q ss_pred cCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 443 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
|.++.++.+.+.+++|++-..+..|+.|..||+.++||||+++||||+|++| .| +|
T Consensus 40 geVi~~~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg~~lLGRV~d~~G-~P-iD 95 (436)
T PRK02118 40 AQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSG-KP-ID 95 (436)
T ss_pred EEEEEEcCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcCccccCCEEccCC-cc-cC
Confidence 4556788999999999999999999999999999999999999999999999 55 44
No 101
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=97.13 E-value=0.00043 Score=75.83 Aligned_cols=57 Identities=35% Similarity=0.555 Sum_probs=51.1
Q ss_pred cCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 443 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.+..+++.+.+....|++...++.|+.|..||+.+.||||+++||||+|++| .|--+
T Consensus 42 eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~vg~~lLGRViD~~G-~pid~ 98 (461)
T TIGR01039 42 EVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLG-EPIDE 98 (461)
T ss_pred EeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEEcChhhcCCEEccCC-cccCC
Confidence 4445688889999999999999999999999999999999999999999999 66443
No 102
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.12 E-value=0.00019 Score=78.21 Aligned_cols=58 Identities=29% Similarity=0.400 Sum_probs=53.3
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.|.+++++.+++.+..|++-..+..|+.|..||+.+.||||+++||||+|++| .|--+
T Consensus 54 ~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGrVid~~G-~pld~ 111 (433)
T PRK07594 54 LAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFG-RPLDG 111 (433)
T ss_pred EEEEEEEcCCeEEEEEccCCcCCCCCCEEEeCCCccEEEeChhhccCEEcccC-CCcCC
Confidence 56788899999999999999999999999999999999999999999999999 55543
No 103
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.11 E-value=0.0012 Score=69.42 Aligned_cols=44 Identities=30% Similarity=0.423 Sum_probs=37.1
Q ss_pred cccccccceeeeeeee---ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 187 YNLLSAGIKAVDSLVP---IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 187 ~epl~TGIraID~l~p---IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+.+.||+..+|.++. +-+|.=..|+|++|+|||+|++..+.+.
T Consensus 33 ~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 33 VETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred CceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999987 5577888999999999999997655544
No 104
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.10 E-value=0.0032 Score=61.33 Aligned_cols=40 Identities=35% Similarity=0.548 Sum_probs=34.1
Q ss_pred ccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 190 LSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 190 l~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.||+..+|-++- +-+|+-..|.|++|+|||++++..+.+
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 4699999999884 778999999999999999999654443
No 105
>PRK09354 recA recombinase A; Provisional
Probab=97.10 E-value=0.0012 Score=70.15 Aligned_cols=111 Identities=23% Similarity=0.329 Sum_probs=72.3
Q ss_pred cccccccceeeeeeeec---cccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhh
Q psy13776 187 YNLLSAGIKAVDSLVPI---GRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALII 263 (539)
Q Consensus 187 ~epl~TGIraID~l~pI---GrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i 263 (539)
.+.+.||+..+|.++.+ -+|.=..|+|++|+|||+|++..+.+....
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~------------------------------ 87 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA------------------------------ 87 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc------------------------------
Confidence 56788999999999984 456677899999999999998766654321
Q ss_pred hhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCC-CceEEEEEecCCCChhhhhhhhHHHHHHHHHHHH
Q psy13776 264 YDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGA-MGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRD 342 (539)
Q Consensus 264 ~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~-~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd 342 (539)
+-.|+|+..=+..+. ++.+.+ |. +++ ++++ ..+ ..++ ++.+.+.+..
T Consensus 88 -----------------G~~~~yId~E~s~~~--~~a~~l---Gvdld~-lli~-qp~--~~Eq------~l~i~~~li~ 135 (349)
T PRK09354 88 -----------------GGTAAFIDAEHALDP--VYAKKL---GVDIDN-LLVS-QPD--TGEQ------ALEIADTLVR 135 (349)
T ss_pred -----------------CCcEEEECCccchHH--HHHHHc---CCCHHH-eEEe-cCC--CHHH------HHHHHHHHhh
Confidence 124666654333332 233333 21 233 3332 222 1333 4667777777
Q ss_pred CCCcEEEEecChhHHHH
Q psy13776 343 NGKHALIIYDDLSKQAV 359 (539)
Q Consensus 343 ~GkdVLli~DslTr~A~ 359 (539)
.+.--+||+||++-+..
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 78888999999998764
No 106
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.09 E-value=0.00021 Score=77.97 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=51.3
Q ss_pred CcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 444 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 444 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
-+.+++.+++.+..+++...+..|+.|..||+.+.||||+++||||+|++| .|--+
T Consensus 61 eVv~~~~~~~~l~~~~~~~gi~~g~~V~~~g~~~~v~vg~~llGrv~d~~G-~pld~ 116 (442)
T PRK06315 61 EVVGFTQNFVFLSPLGELTGVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLG-EPIDT 116 (442)
T ss_pred EEEEEcCCeEEEEEccCCcCCCCCCEEEeCCCccEEEecccccCCEEeccC-ccccc
Confidence 456788899999999999999999999999999999999999999999999 66654
No 107
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.08 E-value=0.00023 Score=77.18 Aligned_cols=57 Identities=35% Similarity=0.559 Sum_probs=51.3
Q ss_pred cCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 443 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
+.++.++.+++.+..||+-..++.|+.|..||+.++||||+++||||+|++| .|--+
T Consensus 36 ~eVi~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~~lLGRVid~~G-~plD~ 92 (413)
T TIGR03497 36 AEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLG-RPLDG 92 (413)
T ss_pred EEEEEEcCCeEEEEEccCccCCCCCCEEEEcCCeeEEEcchhhcCCEEcCCC-CcccC
Confidence 3566778889999999999999999999999999999999999999999999 55543
No 108
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.07 E-value=0.0018 Score=63.47 Aligned_cols=40 Identities=35% Similarity=0.503 Sum_probs=34.4
Q ss_pred ccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 190 LSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 190 l~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.||++.+|-++. +-+|....|.|++|+|||++++..+++
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4699999999986 779999999999999999999654443
No 109
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.07 E-value=0.0022 Score=62.79 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=36.7
Q ss_pred cccccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 187 YNLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 187 ~epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
++.+.||+..+|-++ .+-+|.=..|.|++|+|||++++....+.
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999 45678888999999999999997554443
No 110
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.00 E-value=0.0013 Score=69.37 Aligned_cols=45 Identities=24% Similarity=0.396 Sum_probs=37.4
Q ss_pred cccccccceeeeeeee---ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 187 YNLLSAGIKAVDSLVP---IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 187 ~epl~TGIraID~l~p---IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.+.+.||+..+|.++. +-+|-=..|+|++|+|||+|++..+.+..
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~ 80 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQ 80 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999988 44677779999999999999986666543
No 111
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.97 E-value=0.00036 Score=76.30 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=50.9
Q ss_pred cCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 443 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.+..+++.+.+..+.||.-..++.|+.|..||+.+.||||+++||||+|++| .|--+
T Consensus 37 EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~lLGRVlD~~G-~PiD~ 93 (449)
T TIGR03305 37 EVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTLSRMFDVFG-NTIDR 93 (449)
T ss_pred eeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhhcCCEEccCc-cccCC
Confidence 3444688889999999999999999999999999999999999999999999 66543
No 112
>PRK05922 type III secretion system ATPase; Validated
Probab=96.96 E-value=0.00032 Score=76.46 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=52.8
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
.|.++.++.+++.+.++++...+..||.|..||+.++||||+++||||+|++| +|--
T Consensus 55 ~~eVv~~~~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v~vg~~llGrv~d~~G-~pld 111 (434)
T PRK05922 55 LAEVIGFHNRTTLLMSLSPIHYVALGAEVLPLRRPPSLHLSDHLLGRVLDGFG-NPLD 111 (434)
T ss_pred EEEEEEEeCCeEEEEEccCCCCCCCCCEEEeCCCCcEEEcChhhcCCEeCCCC-CccC
Confidence 45778899999999999999999999999999999999999999999999999 6644
No 113
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.95 E-value=0.00033 Score=78.49 Aligned_cols=59 Identities=32% Similarity=0.459 Sum_probs=55.1
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINV 501 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v 501 (539)
.|-+++++.|++.+.++++..-++.|+.|..||+.+.||+|.++||||+|++| +|--+.
T Consensus 34 ~gEVi~~~~d~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpglLGrV~Dgig-rPLd~~ 92 (578)
T TIGR01043 34 IGEIIRIEGDKAFIQVYEETSGIKPGEPVVGTGAPLSVELGPGLLGSIYDGVQ-RPLDVL 92 (578)
T ss_pred EEEEEEEcCCeEEEEECCCCCCCCCCCEEEECCCccEEEcCHHHhcceeccCC-ccccCc
Confidence 46788999999999999999999999999999999999999999999999999 887655
No 114
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.94 E-value=0.01 Score=57.28 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=22.4
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+-+|+=..|.|++|+|||++++....+.
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468889999999999999997554443
No 115
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.94 E-value=0.0094 Score=65.93 Aligned_cols=44 Identities=30% Similarity=0.542 Sum_probs=37.0
Q ss_pred cccccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 187 YNLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 187 ~epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+.+.|||..+|-++ -+-+|+-.+|.|++|+|||++++..+.+.
T Consensus 10 ~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~ 55 (509)
T PRK09302 10 IEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNG 55 (509)
T ss_pred CccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 457789999999997 37799999999999999999996544433
No 116
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.92 E-value=0.018 Score=57.57 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=27.3
Q ss_pred ccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHH
Q psy13776 192 AGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 192 TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+++.-+|-++. +-+|...+|.|++|+|||++++..+.
T Consensus 8 ~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 8 LSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred EEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44455555543 56789999999999999999865444
No 117
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.91 E-value=0.00043 Score=75.94 Aligned_cols=56 Identities=34% Similarity=0.514 Sum_probs=49.8
Q ss_pred CcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 444 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 444 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
+.-+++.+.+....+++-..++.|+.|..||+.++||||+++||||+|++| +|--+
T Consensus 44 Vv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~vg~~lLGRViD~~G-~pld~ 99 (463)
T PRK09280 44 VAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVPVGKATLGRIFNVLG-EPIDE 99 (463)
T ss_pred eeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEEcChhhcCCEEeeec-cccCC
Confidence 333577888999999999999999999999999999999999999999999 66544
No 118
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.84 E-value=0.014 Score=64.40 Aligned_cols=42 Identities=26% Similarity=0.405 Sum_probs=36.2
Q ss_pred cccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 189 LLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 189 pl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+.|||.-.|-++. +-+|.-.+|.|++|+|||++++..+.+.
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g 45 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNG 45 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46899999999986 6699999999999999999997555544
No 119
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.83 E-value=0.00013 Score=75.11 Aligned_cols=47 Identities=26% Similarity=0.399 Sum_probs=42.1
Q ss_pred HhhhhccccccccccccCCCcccccccc-CcchhhhhhhhhhHHHHhhh
Q psy13776 229 NQKSIYAAPLQYLAPYSGCAMGEFFRDN-GKHALIIYDDLSKQAVAYRQ 276 (539)
Q Consensus 229 nq~~~~~~~~~~la~~~g~~~~e~~~d~-~~~~~~i~d~~~~~a~~~~~ 276 (539)
++.+ +++..+++|+|++++|||||+|+ |+|+|+++||++++|.+++.
T Consensus 137 ~t~~-~~~~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rE 184 (276)
T cd01135 137 NLAN-DPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALRE 184 (276)
T ss_pred ecCC-CCHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHH
Confidence 4443 67889999999999999999998 99999999999999999764
No 120
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.82 E-value=0.00062 Score=74.74 Aligned_cols=51 Identities=39% Similarity=0.728 Sum_probs=46.7
Q ss_pred CCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 448 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
|+.+.+....|++-..++.|+.|..||+.+.||||+++||||+|++| .|--
T Consensus 47 l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~llGRVid~~G-~plD 97 (461)
T PRK12597 47 LDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVGEAVLGRLLDVLG-EPLD 97 (461)
T ss_pred cCCCeEEEEEecCccCCCCCCEEEeCCCceEEEcChhhcCCEEeecc-cccc
Confidence 36778999999999999999999999999999999999999999999 5544
No 121
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.80 E-value=0.00054 Score=74.75 Aligned_cols=91 Identities=24% Similarity=0.337 Sum_probs=61.9
Q ss_pred CccceeeeEEEeeCCCcCCcccccccccc-ceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeec
Q psy13776 401 GGSLTALPVIETQAGDVSAYIPTNVISIT-DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDV 479 (539)
Q Consensus 401 ~GSITal~~v~~~~~D~s~pIp~~~~sit-DGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 479 (539)
.|-++.+--..++..-...++-+.+.--. |+++ .+-+..++.+.+-+..+++-..++.|+.|+.||+.+.|
T Consensus 26 ~G~v~~v~g~~i~~~g~~~~ige~~~i~~~~~~~--------~~EVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v 97 (444)
T PRK08972 26 SGKLVRVVGLTLEATGCRAPVGSLCSIETMAGEL--------EAEVVGFDGDLLYLMPIEELRGVLPGARVTPLGEQSGL 97 (444)
T ss_pred eeEEEEEEcCEEEEeeCCCCCCCEEEEecCCCcE--------EEEEEEecCCEEEEEECCCcCCCCCCCEEEECCCccEE
Confidence 45666555444443334455555443211 2321 11234556667777788888899999999999999999
Q ss_pred ccccccchhhccccCCCcccc
Q psy13776 480 PVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 480 ~~~~~~l~~v~~~lg~~Pai~ 500 (539)
|||+++||||+|++| .|--+
T Consensus 98 ~vg~~llGRVid~~G-~plD~ 117 (444)
T PRK08972 98 PVGMSLLGRVIDGVG-NPLDG 117 (444)
T ss_pred EcChhhcCCeECCCC-CCcCC
Confidence 999999999999999 66543
No 122
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.79 E-value=0.00055 Score=74.76 Aligned_cols=55 Identities=27% Similarity=0.334 Sum_probs=49.3
Q ss_pred CcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 444 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 444 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
.+..++.+.+-+.+|++...+..|+.|..||+.++||||+++||||+|++| .|--
T Consensus 57 eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGRVid~~G-~piD 111 (442)
T PRK08927 57 EVVGFRGDRALLMPFGPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALG-EPID 111 (442)
T ss_pred EEEEEcCCeEEEEEccCccCCCCCCEEEeCCCccEEECChhhCCCEEccCC-CCcc
Confidence 455667778889999999999999999999999999999999999999999 5543
No 123
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.70 E-value=0.00076 Score=73.63 Aligned_cols=52 Identities=35% Similarity=0.476 Sum_probs=44.1
Q ss_pred CCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 448 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
++.+.+=+.++++-..+..|+.|..||+.+.||||+++||||+|++| +|--+
T Consensus 66 ~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~lLGRV~d~~G-~plD~ 117 (439)
T PRK06936 66 FAQHQALLTPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLG-QPFDG 117 (439)
T ss_pred EECCeEEEEecCCCCCCCCCCEEEeCCCceEEEeCccccCCEECCCC-CccCC
Confidence 33444455588999999999999999999999999999999999999 66543
No 124
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.68 E-value=0.0054 Score=64.24 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=35.8
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
...+.||++.+|.++- +-+|.=..|+|++|+|||++++...++
T Consensus 75 ~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 75 VLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred CceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 4568899999999975 667888899999999999999755543
No 125
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=96.67 E-value=0.00073 Score=75.66 Aligned_cols=60 Identities=30% Similarity=0.515 Sum_probs=55.5
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVG 502 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~ 502 (539)
.|-+..++.+.+.+.++++-..++.|+.|.+||+.+.||+|.++||||+|++| +|--+..
T Consensus 35 ~gEVI~l~~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lGpglLG~V~Dgig-rPLd~~~ 94 (591)
T TIGR01042 35 VGEIIRLEGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPGILGNIFDGIQ-RPLKAIA 94 (591)
T ss_pred EEEEEEEcCCeEEEEEccCccCCCCCCEEEeCCCccEEEcCHHHhhcccCcCC-CchHHHH
Confidence 46778899999999999999999999999999999999999999999999999 8876654
No 126
>PRK08149 ATP synthase SpaL; Validated
Probab=96.67 E-value=0.00071 Score=73.67 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=51.8
Q ss_pred CcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccc
Q psy13776 444 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINV 501 (539)
Q Consensus 444 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v 501 (539)
-.+.++.+++.+..|++..-+..|+.|..||+.++||||+++||||+|++| +|--+.
T Consensus 47 evv~~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v~vg~~llGrv~d~~G-~piD~~ 103 (428)
T PRK08149 47 QVVGFQRERTILSLIGNAQGLSRQVVLKPTGKPLSVWVGEALLGAVLDPTG-KIVERF 103 (428)
T ss_pred EEEEeeCcEEEEEECCCccCCCCCCEEEEcCCcCEEEeChhhcCCeeCCCC-CCcCCC
Confidence 456788899999999999999999999999999999999999999999999 676543
No 127
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.65 E-value=0.0092 Score=63.45 Aligned_cols=126 Identities=18% Similarity=0.182 Sum_probs=74.1
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhh
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIY 264 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~ 264 (539)
...+.||++.+|-++. |-+|.=..|+|++|+|||+|++...++.... . +
T Consensus 105 ~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp----------~----------~--------- 155 (344)
T PLN03187 105 VVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLP----------T----------E--------- 155 (344)
T ss_pred CceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcc----------h----------h---------
Confidence 5568899999999976 5577788999999999999997555443210 0 0
Q ss_pred hhhhhHHHHhhhcccCceEEEEEeecc--chhHHHHHHHHHhc--CCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHH
Q psy13776 265 DDLSKQAVAYRQDEKKKLYCIYVAIGQ--KRSTVAQIVKRLTD--SGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFF 340 (539)
Q Consensus 265 d~~~~~a~~~~~~~~~~~~~Vy~~IGe--r~~ev~e~~~~l~~--~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyF 340 (539)
....+..++|+-.-+ +.+.+.++.+.+.- ...+++ +. +....+ ...+.... -.+.+.+
T Consensus 156 ------------~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~-I~-~~~~~~-~e~~~~~l---~~l~~~i 217 (344)
T PLN03187 156 ------------MGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDN-II-YARAYT-YEHQYNLL---LGLAAKM 217 (344)
T ss_pred ------------hCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCe-EE-EecCCC-HHHHHHHH---HHHHHHH
Confidence 000123678887755 56666666655421 233455 22 222222 22221111 1233344
Q ss_pred HHCCCcEEEEecChhHHHHH
Q psy13776 341 RDNGKHALIIYDDLSKQAVA 360 (539)
Q Consensus 341 rd~GkdVLli~DslTr~A~A 360 (539)
.+. .-=|||+||++-+-++
T Consensus 218 ~~~-~~~LvVIDSital~r~ 236 (344)
T PLN03187 218 AEE-PFRLLIVDSVIALFRV 236 (344)
T ss_pred Hhc-CCCEEEEeCcHHhhhc
Confidence 443 3457899999988553
No 128
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.64 E-value=0.0016 Score=71.25 Aligned_cols=56 Identities=34% Similarity=0.471 Sum_probs=50.4
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
.|.+++++.+++.+.+||+...|+.|+.|..++ -+.||||+++||||+|++| .|--
T Consensus 63 ~~eVv~~~~~~~~l~~~~~~~gi~~g~~v~~~~-~~~v~vg~~llGRV~d~~G-~piD 118 (450)
T PRK06002 63 LGEVVRVDPDGVTVKPFEPRIEIGLGDAVFRKG-PLRIRPDPSWKGRVINALG-EPID 118 (450)
T ss_pred EEEEEEEeCCeEEEEEccCCcCCCCCCEEEeCC-CceeecCcccccCEECCCC-cCCC
Confidence 457889999999999999999999999999955 6799999999999999999 6643
No 129
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.61 E-value=0.054 Score=50.78 Aligned_cols=71 Identities=21% Similarity=0.188 Sum_probs=38.4
Q ss_pred CcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccc
Q psy13776 345 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTN 424 (539)
Q Consensus 345 kdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~ 424 (539)
+.-++|+|+++.+... .+ ...-..+.+++....+ .| +|.+.+.......-....+..
T Consensus 95 ~~~~lviD~~~~~~~~--------~~--------~~~~~~i~~l~~~l~~------~g-~tvi~v~~~~~~~~~~~~~~~ 151 (187)
T cd01124 95 KAKRVVIDSVSGLLLM--------EQ--------STARLEIRRLLFALKR------FG-VTTLLTSEQSGLEGTGFGGGD 151 (187)
T ss_pred CCCEEEEeCcHHHhhc--------Ch--------HHHHHHHHHHHHHHHH------CC-CEEEEEeccccCCCcccCcCc
Confidence 4458899999987652 00 0111223445544433 12 465555433322111223456
Q ss_pred cccccceeEEeehh
Q psy13776 425 VISITDGQIFLETE 438 (539)
Q Consensus 425 ~~sitDGqIvLsr~ 438 (539)
+..+.|+-|.|++.
T Consensus 152 ~~~~aD~ii~l~~~ 165 (187)
T cd01124 152 VEYLVDGVIRLRLD 165 (187)
T ss_pred eeEeeeEEEEEEEE
Confidence 78899999999877
No 130
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.48 E-value=0.033 Score=54.54 Aligned_cols=37 Identities=27% Similarity=0.553 Sum_probs=29.0
Q ss_pred cceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 193 GIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 193 GIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
||+.+|-++. +-+|.-.+|.|++|+|||++++..+.+
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~ 39 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQ 39 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5667777763 447899999999999999999755544
No 131
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.41 E-value=0.008 Score=69.93 Aligned_cols=45 Identities=27% Similarity=0.457 Sum_probs=37.9
Q ss_pred cccccccceeeeeeee---ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 187 YNLLSAGIKAVDSLVP---IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 187 ~epl~TGIraID~l~p---IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.+.+.||+..+|.++. +-+|.-..|+|++|+|||+|++..+++..
T Consensus 38 v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~ 85 (790)
T PRK09519 38 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ 85 (790)
T ss_pred CceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578899999999987 55788889999999999999976666543
No 132
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.36 E-value=0.0018 Score=70.68 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=45.6
Q ss_pred CCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 446 LNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.-++.+.+=+-+|++-..+..|+.|..||+.+.||||+++||||+|++| .|--+
T Consensus 57 v~~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v~vg~~llGrv~d~~G-~pld~ 110 (434)
T PRK07196 57 VGFDRDITYLMPFKHPGGVLGGARVFPSEQDGELLIGDSWLGRVINGLG-EPLDG 110 (434)
T ss_pred EEecCCEEEEEECCCccCCCCCCEEEECCCccEEEcCccccCCeeCcCC-CCcCC
Confidence 3445566666778888889999999999999999999999999999999 56543
No 133
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.35 E-value=0.013 Score=61.10 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=35.2
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
...+.||+..+|-++. +-+|.-..|+|++|+|||++++..+.+
T Consensus 81 ~~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 81 VGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred CCccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3457789999998875 668899999999999999999765554
No 134
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.21 E-value=0.099 Score=52.48 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=35.3
Q ss_pred cccccccceeeeeee-eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLV-PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~-pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
++-+.||+..+|-++ -+.+|+-..|.|++|+|||+++.....+
T Consensus 10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 557789999999985 3668888999999999999999654444
No 135
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=96.20 E-value=0.0066 Score=66.64 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=46.2
Q ss_pred cCCCCCCCcccEEecccccccccceeeec-------cceeecccccccchhhccccCCCcccc
Q psy13776 445 ALNLEPDNVGVVVFGNDRLIKEGDIVKRT-------GAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 445 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~t-------~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
+..++.+.+=...||+-.-+..|+.|..| |+.+.||||+++||||+|++| .|--+
T Consensus 69 Vvg~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~~~~~~~~v~vg~~llGRvid~~G-~piDg 130 (455)
T PRK07960 69 VVGFNGQRLFLMPLEEVEGILPGARVYARNISGEGLQSGKQLPLGPALLGRVLDGSG-KPLDG 130 (455)
T ss_pred EEEecCCEEEEEECCCccCCCCCCEEEECCcccccCCCceEEECCcccccCEECCCc-cccCC
Confidence 34455666666778888889999999999 999999999999999999999 66544
No 136
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=96.17 E-value=0.0023 Score=71.94 Aligned_cols=60 Identities=30% Similarity=0.497 Sum_probs=55.0
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVG 502 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~ 502 (539)
.|-...++.+++-+.++++-+.+..|+.|..||+.+.||+|+++||||+|++| +|--+..
T Consensus 37 ~gEVi~~~~d~a~iqv~e~T~Gl~~G~~V~~tg~plsv~lGpglLGrv~Dg~g-rPLd~~~ 96 (586)
T PRK04192 37 IGEIIRIEGDKATIQVYEETSGIKPGEPVEFTGEPLSVELGPGLLGSIFDGIQ-RPLDELA 96 (586)
T ss_pred EEEEEEEeCCceEEEEecCCcCCCCCCEEEeCCCccEEEcCHHhcCCeecCCC-Ccccccc
Confidence 45678899999999999999999999999999999999999999999999999 8876554
No 137
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.15 E-value=0.051 Score=59.83 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=36.1
Q ss_pred cccccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 187 ~epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.+.+.|||.-+|-++ -+-+|+-.+|.|++|+|||||++....
T Consensus 73 ~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~ 116 (454)
T TIGR00416 73 VPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVAC 116 (454)
T ss_pred cCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456889999999998 488999999999999999999964333
No 138
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.10 E-value=0.00067 Score=69.84 Aligned_cols=48 Identities=81% Similarity=1.268 Sum_probs=42.1
Q ss_pred HHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhh
Q psy13776 228 INQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276 (539)
Q Consensus 228 ~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~ 276 (539)
+++.+ +++..+++++|++|+++|+|+|+|+|+|+++||+.++|.+++.
T Consensus 132 ~~t~d-~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rE 179 (274)
T cd01132 132 AATAS-DPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQ 179 (274)
T ss_pred EeCCC-CchhHHHHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHH
Confidence 34443 5778899999999999999999999999999999999999753
No 139
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.09 E-value=0.023 Score=60.34 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=34.9
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
...+.||++.+|-++. +-+|.=..|+|++|+|||++++....|
T Consensus 102 ~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 102 IIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred cceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 4568899999999875 556788899999999999999654443
No 140
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.91 E-value=0.065 Score=57.57 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=34.9
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHH
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAID 225 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~ 225 (539)
.+.+.|||.-+|-++. +-+|+-.+|.|++|+|||+|++.
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq 101 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQ 101 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHH
Confidence 5678899999999985 78899999999999999999954
No 141
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.87 E-value=0.00061 Score=67.78 Aligned_cols=42 Identities=43% Similarity=0.783 Sum_probs=38.1
Q ss_pred ccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhh
Q psy13776 234 YAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYR 275 (539)
Q Consensus 234 ~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~ 275 (539)
+++..+++++|++|+++|||+|+|+|+++++||++++|.+++
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~a~A~r 122 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRWAQAYR 122 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHH
T ss_pred hhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHHHHHHH
Confidence 466778899999999999999999999999999999999964
No 142
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.76 E-value=0.035 Score=58.21 Aligned_cols=42 Identities=33% Similarity=0.433 Sum_probs=34.2
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
...+.||++.+|.++. +-+|.=..|.|++|+|||++++....
T Consensus 75 ~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 75 VIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred cceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 4458899999999876 45688889999999999999964443
No 143
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.68 E-value=0.13 Score=56.41 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=35.0
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHH
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTI 227 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I 227 (539)
.+.+.||+.-+|-++. +-+|+-.+|.|++|+|||+|++...
T Consensus 59 ~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a 101 (446)
T PRK11823 59 EPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVA 101 (446)
T ss_pred CCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999885 6789999999999999999996433
No 144
>PTZ00035 Rad51 protein; Provisional
Probab=95.62 E-value=0.033 Score=59.01 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=33.8
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHH
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAID 225 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~ 225 (539)
...+.||++.+|.++- +-+|.-..|+|++|+|||+|++.
T Consensus 97 ~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~ 137 (337)
T PTZ00035 97 IIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHT 137 (337)
T ss_pred CccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHH
Confidence 5678899999999984 56788889999999999999953
No 145
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.32 E-value=0.1 Score=45.14 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=20.6
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.+.-+.|.|++|+|||+++ ..++++.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~-~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA-RAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHh
Confidence 3567899999999999998 5666543
No 146
>PF13173 AAA_14: AAA domain
Probab=95.24 E-value=0.049 Score=48.91 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=22.2
Q ss_pred HHHHHHHC--CCcEEEEecChhHHHHHhHHhhhccC
Q psy13776 336 MGEFFRDN--GKHALIIYDDLSKQAVAYRQMSLLLR 369 (539)
Q Consensus 336 iAEyFrd~--GkdVLli~DslTr~A~A~Reisl~lg 369 (539)
+.++|++. .+..++++|++.+.......+-.+..
T Consensus 50 ~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d 85 (128)
T PF13173_consen 50 LLEYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVD 85 (128)
T ss_pred hHHHHHHhhccCCcEEEEehhhhhccHHHHHHHHHH
Confidence 55666654 46688899999888655555544444
No 147
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.19 E-value=0.0018 Score=66.74 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=39.9
Q ss_pred ccccccccccccCCCcccccccc-CcchhhhhhhhhhHHHHhhh
Q psy13776 234 YAAPLQYLAPYSGCAMGEFFRDN-GKHALIIYDDLSKQAVAYRQ 276 (539)
Q Consensus 234 ~~~~~~~la~~~g~~~~e~~~d~-~~~~~~i~d~~~~~a~~~~~ 276 (539)
+++..+++++|+++++||||+|. |+|+|+++||+.++|.|++.
T Consensus 138 ~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~re 181 (274)
T cd01133 138 EPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSE 181 (274)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHH
Confidence 56788899999999999999999 99999999999999999864
No 148
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.08 E-value=0.0025 Score=67.95 Aligned_cols=76 Identities=22% Similarity=0.413 Sum_probs=60.4
Q ss_pred HHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcC
Q psy13776 227 IINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDS 306 (539)
Q Consensus 227 I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~ 306 (539)
++|+.+ .++..+++++|+++++||||+|.|+|+++++|+++++|.|++ |+.
T Consensus 224 V~nts~-~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~R-------------------EIs--------- 274 (369)
T cd01134 224 IANTSN-MPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALR-------------------EIS--------- 274 (369)
T ss_pred EEECCC-CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHHH-------------------HHH---------
Confidence 445554 577889999999999999999999999999999999999963 221
Q ss_pred CCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHH
Q psy13776 307 GAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR 341 (539)
Q Consensus 307 ~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFr 341 (539)
....++|..+-.-||....+|+++=
T Consensus 275 ----------~~l~E~P~~~GYP~yl~s~La~~yE 299 (369)
T cd01134 275 ----------GRLEEMPGEEGYPAYLGARLASFYE 299 (369)
T ss_pred ----------HhcCCCCCccCcCccHHHHHHHHHH
Confidence 1234677777677799999988773
No 149
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.05 E-value=0.044 Score=57.85 Aligned_cols=110 Identities=20% Similarity=0.319 Sum_probs=66.4
Q ss_pred cccccccceeeeeeee---ccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhh
Q psy13776 187 YNLLSAGIKAVDSLVP---IGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALII 263 (539)
Q Consensus 187 ~epl~TGIraID~l~p---IGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i 263 (539)
.+.+.||..++|..++ +-+|.=+-|+|++++|||+|++..+.+....
T Consensus 31 ~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~------------------------------ 80 (322)
T PF00154_consen 31 IEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ------------------------------ 80 (322)
T ss_dssp S-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT------------------------------
T ss_pred cceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc------------------------------
Confidence 5678999999999987 3356677899999999999998777753221
Q ss_pred hhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCC-CceEEEEEecCCCChhhhhhhhHHHHHHHHHHHH
Q psy13776 264 YDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGA-MGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRD 342 (539)
Q Consensus 264 ~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~-~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd 342 (539)
+-+|+|+-. |..- -.++.+.+ |. +++. +|+-+ + .. .-|+.++|.+..
T Consensus 81 -----------------g~~~a~ID~-e~~l-d~~~a~~l---Gvdl~rl-lv~~P-~--~~------E~al~~~e~lir 128 (322)
T PF00154_consen 81 -----------------GGICAFIDA-EHAL-DPEYAESL---GVDLDRL-LVVQP-D--TG------EQALWIAEQLIR 128 (322)
T ss_dssp -----------------T-EEEEEES-SS----HHHHHHT---T--GGGE-EEEE--S--SH------HHHHHHHHHHHH
T ss_pred -----------------cceeEEecC-cccc-hhhHHHhc---Cccccce-EEecC-C--cH------HHHHHHHHHHhh
Confidence 236777754 2221 22344443 22 4554 33332 2 12 246788899888
Q ss_pred CCCcEEEEecChhHHH
Q psy13776 343 NGKHALIIYDDLSKQA 358 (539)
Q Consensus 343 ~GkdVLli~DslTr~A 358 (539)
.|.-.++|+||+...+
T Consensus 129 sg~~~lVVvDSv~al~ 144 (322)
T PF00154_consen 129 SGAVDLVVVDSVAALV 144 (322)
T ss_dssp TTSESEEEEE-CTT-B
T ss_pred cccccEEEEecCcccC
Confidence 8887789999986553
No 150
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.01 E-value=0.049 Score=54.98 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=17.6
Q ss_pred eeeeccCCCCchHhHHHHHHHhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
++++||+|+|||||| ..|+|..
T Consensus 53 ~lf~GPPG~GKTTLA-~IIA~e~ 74 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLA-RIIANEL 74 (233)
T ss_dssp EEEESSTTSSHHHHH-HHHHHHC
T ss_pred EEEECCCccchhHHH-HHHHhcc
Confidence 468999999999998 5566554
No 151
>PF05729 NACHT: NACHT domain
Probab=94.99 E-value=0.099 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=17.8
Q ss_pred eeeeccCCCCchHhHHHHHHHhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+.|.|++|+|||+++ ..++.+-
T Consensus 3 l~I~G~~G~GKStll-~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL-RKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHH-HHHHHHH
Confidence 579999999999998 5666544
No 152
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.95 E-value=0.073 Score=54.15 Aligned_cols=43 Identities=33% Similarity=0.579 Sum_probs=33.1
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
...+.||++.+|.++- |-.|+=.=|+|++|+|||.|++...+|
T Consensus 17 ~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~ 61 (256)
T PF08423_consen 17 WSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVN 61 (256)
T ss_dssp S-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHH
Confidence 5678999999999983 556778889999999999999755454
No 153
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.89 E-value=0.022 Score=61.72 Aligned_cols=58 Identities=36% Similarity=0.594 Sum_probs=44.7
Q ss_pred ccccccccceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 422 PTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 422 p~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
-.+|.++.+.+.+|.. |+....+..|+.|..||.-++||+|+++||||+|++| .|--.
T Consensus 61 ~aEVvgf~~~~~~L~p--------------------~~~~~gv~~g~~V~~~~~~~~v~~g~~lLGRVld~~G-~plDg 118 (441)
T COG1157 61 LAEVVGFNEERVLLMP--------------------FEPVEGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLG-RPLDG 118 (441)
T ss_pred eEEEEEEcCCeEEEec--------------------cCccccCCCCCEEEecCCccccccChhhhhhhhccCC-CcCcC
Confidence 4556666666666544 2344558899999999999999999999999999999 55443
No 154
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.74 E-value=0.12 Score=49.60 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=36.9
Q ss_pred EEEEeeccc-hhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHC-CCcEEEEecChhHHHHHh
Q psy13776 284 CIYVAIGQK-RSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN-GKHALIIYDDLSKQAVAY 361 (539)
Q Consensus 284 ~Vy~~IGer-~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~-GkdVLli~DslTr~A~A~ 361 (539)
++|++..+. ..|+++-++..++.-..+.+++ ....-+.+.+.+. +.+ .+++|++|-|....
T Consensus 27 ~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~----------------E~~~~l~~~l~~~~~~~-~VLIDclt~~~~n~ 89 (169)
T cd00544 27 VTYIATAEAFDDEMAERIARHRKRRPAHWRTI----------------ETPRDLVSALKELDPGD-VVLIDCLTLWVTNL 89 (169)
T ss_pred eEEEEccCcCCHHHHHHHHHHHHhCCCCceEe----------------ecHHHHHHHHHhcCCCC-EEEEEcHhHHHHHh
Confidence 566666654 4567777666655333332222 2223455556554 444 69999999998876
Q ss_pred H
Q psy13776 362 R 362 (539)
Q Consensus 362 R 362 (539)
.
T Consensus 90 l 90 (169)
T cd00544 90 L 90 (169)
T ss_pred C
Confidence 5
No 155
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.51 E-value=0.079 Score=57.39 Aligned_cols=29 Identities=14% Similarity=0.207 Sum_probs=25.2
Q ss_pred HHHHHHHCCCcEEEEecChhHHHHHhHHh
Q psy13776 336 MGEFFRDNGKHALIIYDDLSKQAVAYRQM 364 (539)
Q Consensus 336 iAEyFrd~GkdVLli~DslTr~A~A~Rei 364 (539)
-|+.++..|+.+++++|.+-||-.++.+.
T Consensus 95 ~a~~~~~~gr~tiLflDEIHRfnK~QQD~ 123 (436)
T COG2256 95 EARKNRLLGRRTILFLDEIHRFNKAQQDA 123 (436)
T ss_pred HHHHHHhcCCceEEEEehhhhcChhhhhh
Confidence 46667888999999999999999999775
No 156
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.43 E-value=0.18 Score=47.57 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=22.3
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+|+-..|.|++|+|||+++++.+...
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 379999999999999999997655543
No 157
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=94.35 E-value=0.29 Score=53.26 Aligned_cols=162 Identities=20% Similarity=0.291 Sum_probs=84.6
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhccc
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEK 279 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~ 279 (539)
|+....||..+|=|.+|||||+++++ +.|.-+. +
T Consensus 4 FF~~~~G~TLLIKG~PGTGKTtfaLe-lL~~l~~---------------------~------------------------ 37 (484)
T PF07088_consen 4 FFTQEPGQTLLIKGEPGTGKTTFALE-LLNSLKD---------------------H------------------------ 37 (484)
T ss_pred hhcCCCCcEEEEecCCCCCceeeehh-hHHHHhc---------------------c------------------------
Confidence 56778899999999999999999975 3332221 0
Q ss_pred CceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhh-hhhhhH---HHHHHHHHHH--H-CCCcEEEEec
Q psy13776 280 KKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPL-QYLAPY---SGCAMGEFFR--D-NGKHALIIYD 352 (539)
Q Consensus 280 ~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~-r~~ap~---~a~tiAEyFr--d-~GkdVLli~D 352 (539)
.+ ..|+.-=--...|.+.. ...++.++++-++-++-|.--.. ....|+ .--+.=|+|- + .+++.+|++|
T Consensus 38 ~~--v~YISTRVd~d~vy~~y--~~~~~~i~~~~vlDatQd~~~~~~~~~vp~~~l~~ds~~~f~~~i~~~~k~~iI~~D 113 (484)
T PF07088_consen 38 GN--VMYISTRVDQDTVYEMY--PWIEESIDPTNVLDATQDPFELPLDKDVPFERLDIDSFRDFVDKINEAGKKPIIAFD 113 (484)
T ss_pred CC--eEEEEeccCHHHHHHhh--hhhccccChhhhhhhccchhhccccccCcccccCHHHHHHHHHHhhhcccCcEEEEe
Confidence 01 23443322233333333 44566777777776665421111 122332 1223333343 2 4999999999
Q ss_pred ChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccc
Q psy13776 353 DLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISI 428 (539)
Q Consensus 353 slTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~si 428 (539)
|---..+...+ +..-|+++-...-.|.|=|.. .-+=.+.+.+.-..+-=|||.|-|++.
T Consensus 114 SWdaiieyla~----------~~~~~ed~e~l~~dLv~lard-------~g~~LIlVsEsa~~~~LdYivDGVVTL 172 (484)
T PF07088_consen 114 SWDAIIEYLAE----------EHDEPEDIETLTNDLVELARD-------MGINLILVSESAENEPLDYIVDGVVTL 172 (484)
T ss_pred cHHHHHHHhhh----------hhcCcHHHHHHHHHHHHHHhh-------cCceEEEEEecCCCCcchheeeeEEEE
Confidence 94333332221 123344433333445443322 223445555554444457777666655
No 158
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.29 E-value=0.11 Score=54.03 Aligned_cols=44 Identities=32% Similarity=0.478 Sum_probs=35.1
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-+.+.||.+.+|-++. +-+|.-.=|||+.++|||++++..++|.
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~a 84 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANA 84 (279)
T ss_pred cccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHh
Confidence 6788999999999987 1134455899999999999998666654
No 159
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.27 E-value=0.13 Score=45.18 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=16.9
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+-..|.|++|+|||+++ ..++++.
T Consensus 5 ~~~~i~G~~G~GKT~~~-~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLI-KRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHH-HHHHHHH
T ss_pred cccEEEcCCCCCHHHHH-HHHHHHh
Confidence 34578999999999998 6666554
No 160
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.25 E-value=0.033 Score=53.08 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHCCCcEEEEecChhHHH
Q psy13776 330 PYSGCAMGEFFRDNGKHALIIYDDLSKQA 358 (539)
Q Consensus 330 p~~a~tiAEyFrd~GkdVLli~DslTr~A 358 (539)
...-..+.+++..++++++|++|++..++
T Consensus 103 ~~~l~~~~~~l~~~~~~~iiviDe~~~~~ 131 (234)
T PF01637_consen 103 FSALERLLEKLKKKGKKVIIVIDEFQYLA 131 (234)
T ss_dssp G--HHHHHHHHHHCHCCEEEEEETGGGGG
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHHh
Confidence 34445666777788888999999998887
No 161
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.21 E-value=0.005 Score=64.97 Aligned_cols=57 Identities=28% Similarity=0.545 Sum_probs=46.0
Q ss_pred CCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhh
Q psy13776 215 RQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276 (539)
Q Consensus 215 ~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~ 276 (539)
.+-.||++ ++++.+ +++..+++++|+++++||||+|.|+|+++++|++.++|.|++.
T Consensus 121 ~~l~rtvv----v~~t~d-~~~~~r~~~~~~a~~~AEyfr~~g~~Vll~~Dsltr~a~A~re 177 (326)
T cd01136 121 EGLKRSVV----VVATSD-ESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQRE 177 (326)
T ss_pred CccceEEE----EEcCCC-CCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHH
Confidence 33455554 234443 5778889999999999999999999999999999999999753
No 162
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.06 E-value=0.35 Score=42.12 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=18.2
Q ss_pred eeeeccCCCCchHhHHHHHHHhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
++|.|++|+|||+++ ..++++.
T Consensus 1 ill~G~~G~GKT~l~-~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA-RALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHH-HHHHHHT
T ss_pred CEEECcCCCCeeHHH-HHHHhhc
Confidence 478999999999998 6666554
No 163
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.93 E-value=0.042 Score=55.88 Aligned_cols=29 Identities=31% Similarity=0.488 Sum_probs=24.8
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.|.+|++.+|+|++|+|||||+ -.++
T Consensus 26 VS~~i~~Ge~lgivGeSGsGKSTL~-r~l~ 54 (252)
T COG1124 26 VSLEIERGETLGIVGESGSGKSTLA-RLLA 54 (252)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHH-HHHh
Confidence 3578999999999999999999998 3443
No 164
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.93 E-value=0.38 Score=50.92 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=20.2
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+++.+.|.|++|+|||+++ ..++++.
T Consensus 54 ~~~~~lI~G~~GtGKT~l~-~~v~~~l 79 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTV-KKVFEEL 79 (394)
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 4567899999999999998 5555443
No 165
>KOG0730|consensus
Probab=93.47 E-value=0.087 Score=59.93 Aligned_cols=113 Identities=22% Similarity=0.414 Sum_probs=61.0
Q ss_pred cccceeeeeeeecc--ccceeeeeccCCCCchHhHHHHHHHhhhhccccccccc--------cccCCC---ccccccccC
Q psy13776 191 SAGIKAVDSLVPIG--RGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLA--------PYSGCA---MGEFFRDNG 257 (539)
Q Consensus 191 ~TGIraID~l~pIG--rGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la--------~~~g~~---~~e~~~d~~ 257 (539)
+-.++.-+.|.=+| +=-.++..||+|||||++| ..++|+... ++++ +|.|++ +.+-|.--.
T Consensus 451 ~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lA-kalAne~~~-----nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 451 EWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLA-KALANEAGM-----NFLSVKGPELFSKYVGESERAIREVFRKAR 524 (693)
T ss_pred hhhhhchHHHHHhcCCCCceEEEECCCCcchHHHH-HHHhhhhcC-----CeeeccCHHHHHHhcCchHHHHHHHHHHHh
Confidence 33444445555554 2236789999999999999 889988754 3333 355542 222221100
Q ss_pred --cchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecC
Q psy13776 258 --KHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATA 319 (539)
Q Consensus 258 --~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~ata 319 (539)
.+.++++|++-.-+.. |+.+.. |-..|-+.+++.++.+-+..++.+|++||.
T Consensus 525 ~~aP~IiFfDEiDsi~~~-R~g~~~---------~v~~RVlsqLLtEmDG~e~~k~V~ViAATN 578 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGS-RGGSSS---------GVTDRVLSQLLTEMDGLEALKNVLVIAATN 578 (693)
T ss_pred hcCCeEEehhhHHhHhhc-cCCCcc---------chHHHHHHHHHHHcccccccCcEEEEeccC
Confidence 1234444444222222 111100 233566777888887777766666666664
No 166
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=93.41 E-value=0.037 Score=66.28 Aligned_cols=55 Identities=29% Similarity=0.457 Sum_probs=48.0
Q ss_pred CcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 444 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 444 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
-+.-++.+.+=+-++++-..+..|+.|..||+-+.||+|+++||||+|++| +|--
T Consensus 39 EVIg~~~d~a~iq~~e~t~Gl~~G~~V~~tg~~l~V~lG~~LLGRV~DGlG-rPL~ 93 (1017)
T PRK14698 39 EIIRLEGDKAVIQVYEETAGLKPGEPVEGTGSSLSVELGPGLLTSIYDGIQ-RPLE 93 (1017)
T ss_pred EEEEEeCCEEEEEECCCCCCCCCCCEEEEcCCcceeecCHHHhhcccCCCC-ChHH
Confidence 344566777888888999999999999999999999999999999999999 6643
No 167
>PRK05973 replicative DNA helicase; Provisional
Probab=93.40 E-value=0.41 Score=48.51 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=24.5
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
-+-+|+-.+|.|.+|+|||++++..+.+..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a 89 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAM 89 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 556799999999999999999976555443
No 168
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.03 E-value=0.09 Score=47.12 Aligned_cols=29 Identities=41% Similarity=0.422 Sum_probs=24.1
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
..+.+..|+..+|.|++|+|||||+ .++.
T Consensus 8 vsl~i~~ge~v~I~GpSGsGKSTLl-~~l~ 36 (107)
T cd00820 8 VLVDVYGKVGVLITGDSGIGKTELA-LELI 36 (107)
T ss_pred eEEEEcCCEEEEEEcCCCCCHHHHH-HHhh
Confidence 3467888999999999999999998 4443
No 169
>PRK08181 transposase; Validated
Probab=93.03 E-value=0.12 Score=53.24 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=22.3
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+++-+.++|++|||||.|+ ..|.++..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa-~Aia~~a~ 131 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLA-AAIGLALI 131 (269)
T ss_pred cCceEEEEecCCCcHHHHH-HHHHHHHH
Confidence 6788999999999999999 56666553
No 170
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.94 E-value=0.091 Score=51.44 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=26.3
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+..
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~ 49 (227)
T cd03260 19 ISLDIPKGEITALIGPSGCGKSTLL-RLLNRL 49 (227)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 3468889999999999999999998 666643
No 171
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=92.94 E-value=0.059 Score=57.93 Aligned_cols=69 Identities=30% Similarity=0.517 Sum_probs=55.0
Q ss_pred ccccccccee---EEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 423 TNVISITDGQ---IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 423 ~~~~sitDGq---IvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
.|...+.+++ ++|.=+.. |..+.|-.+.|+.-.-+.-|+.|.-||.=..||||+++||||.|.|| -|--
T Consensus 28 ~naL~~~~~~~~~~~leV~q~-------lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VPVG~~~lgri~nvlG-~~iD 99 (468)
T COG0055 28 YNALEVQNGNQGTLVLEVAQH-------LGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLG-EPID 99 (468)
T ss_pred hhhheeccCCcceEeeehHHH-------hCCCeEEEEEecCccCcccCcEEecCCCceEEecchhhcccchhccC-Cccc
Confidence 3555555553 67764422 44568889999999999999999999999999999999999999999 4433
No 172
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.86 E-value=0.095 Score=50.66 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 18 ~v~~~i~~G~~~~i~G~nGsGKSTLl-~~l~G 48 (210)
T cd03269 18 DISFSVEKGEIFGLLGPNGAGKTTTI-RMILG 48 (210)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 34567889999999999999999998 66663
No 173
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.81 E-value=1.8 Score=37.60 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=19.9
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++|+|.+|+|||||. ..+.++.
T Consensus 1 ~V~iiG~~~~GKSTli-n~l~~~~ 23 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLI-NALTGKK 23 (116)
T ss_dssp EEEEEESTTSSHHHHH-HHHHTST
T ss_pred CEEEECCCCCCHHHHH-HHHhccc
Confidence 6899999999999997 8888643
No 174
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.80 E-value=0.095 Score=50.99 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=25.9
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 24 isl~i~~G~~~~i~G~nGsGKSTLl-~~i~G 53 (221)
T TIGR02211 24 VSLSIGKGEIVAIVGSSGSGKSTLL-HLLGG 53 (221)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 3477889999999999999999998 66663
No 175
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.78 E-value=0.092 Score=51.38 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=26.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.+.+||..+|+|++|+|||||+ .+|+..
T Consensus 21 ~isl~i~~G~~~~i~G~nGsGKSTLl-~~l~G~ 52 (229)
T cd03254 21 DINFSIKPGETVAIVGPTGAGKTTLI-NLLMRF 52 (229)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcC
Confidence 33478889999999999999999998 677643
No 176
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.75 E-value=0.087 Score=53.71 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|+.+.|+|++|||||||+ ..|+
T Consensus 21 ~i~L~v~~GEfvsilGpSGcGKSTLL-riiA 50 (248)
T COG1116 21 DINLSVEKGEFVAILGPSGCGKSTLL-RLIA 50 (248)
T ss_pred cceeEECCCCEEEEECCCCCCHHHHH-HHHh
Confidence 34578999999999999999999998 5554
No 177
>PRK04296 thymidine kinase; Provisional
Probab=92.75 E-value=0.66 Score=44.85 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.1
Q ss_pred cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+=..|.|+.|+||||+++..+.+.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5567899999999999998766544
No 178
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.73 E-value=0.096 Score=49.91 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=25.2
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+.+|+..+|+|++|+|||||+ .+|..
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G 40 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLL-LHLNG 40 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 467889999999999999999998 66653
No 179
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.67 E-value=0.11 Score=49.33 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+.+|+..+|+|++|+|||||+ .+|..
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl-~~l~G 48 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLL-RCIAG 48 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 477889999999999999999998 66663
No 180
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.62 E-value=0.1 Score=50.42 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=26.0
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|..
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl-~~l~G 49 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLL-RLLNG 49 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHH-HHHhc
Confidence 33467889999999999999999998 66663
No 181
>PRK06893 DNA replication initiation factor; Validated
Probab=92.61 E-value=0.13 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.4
Q ss_pred eeeeccCCCCchHhHHHHHHHhhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
..|+|++|+|||+|+ ..|+|+..
T Consensus 42 l~l~G~~G~GKThL~-~ai~~~~~ 64 (229)
T PRK06893 42 FYIWGGKSSGKSHLL-KAVSNHYL 64 (229)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHH
Confidence 579999999999998 67887653
No 182
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.58 E-value=0.1 Score=50.11 Aligned_cols=30 Identities=33% Similarity=0.482 Sum_probs=25.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|++.+|+|++|+|||||+ ..|+
T Consensus 16 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 45 (206)
T TIGR03608 16 DLNLTIEKGKMYAIIGESGSGKSTLL-NIIG 45 (206)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHH-HHHh
Confidence 33467889999999999999999998 6665
No 183
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.55 E-value=0.11 Score=50.20 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=26.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|+.
T Consensus 19 ~~sl~i~~G~~~~i~G~nGsGKSTLl-~~l~G 49 (214)
T cd03292 19 GINISISAGEFVFLVGPSGAGKSTLL-KLIYK 49 (214)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 34577889999999999999999998 66653
No 184
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.51 E-value=0.11 Score=50.45 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=25.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 23 ~s~~i~~G~~~~l~G~nGsGKSTLl-~~i~G 52 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLL-NILGG 52 (218)
T ss_pred eEEEEcCCCEEEEEcCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66663
No 185
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.48 E-value=0.11 Score=50.00 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|++.+|.|++|+|||||+ .+|+.
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G 49 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLL-KLIAG 49 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 34577889999999999999999998 66653
No 186
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.46 E-value=0.11 Score=50.55 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=25.0
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|.
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 47 (222)
T cd03224 19 VSLTVPEGEIVALLGRNGAGKTTLL-KTIM 47 (222)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHH-HHHh
Confidence 3467889999999999999999998 6555
No 187
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.45 E-value=0.62 Score=48.67 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=20.9
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
++++.+.|.|++|+|||+++ ..+.++.
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CCCCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 34467899999999999998 5566543
No 188
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.39 E-value=0.11 Score=50.35 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=25.7
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 51 (216)
T TIGR00960 22 LNFHITKGEMVFLVGHSGAGKSTFL-KLILG 51 (216)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66663
No 189
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.38 E-value=0.1 Score=51.46 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=25.7
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 50 (243)
T TIGR02315 21 INLNINPGEFVAIIGPSGAGKSTLL-RCINR 50 (243)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66663
No 190
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.34 E-value=0.11 Score=50.02 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=26.5
Q ss_pred eeeeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 196 AVDSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 196 aID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+++..+.+.+|.+.+|+|++|+|||||+ .+|.
T Consensus 15 ~l~~~~~i~~Ge~~~l~G~nGsGKSTLl-~~l~ 46 (177)
T cd03222 15 LLVELGVVKEGEVIGIVGPNGTGKTTAV-KILA 46 (177)
T ss_pred EEccCcEECCCCEEEEECCCCChHHHHH-HHHH
Confidence 3344468999999999999999999998 6665
No 191
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.34 E-value=0.45 Score=51.48 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=18.2
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
..+++.|++||||||++ ..|++.
T Consensus 37 ~~ilL~GppGtGKTtLA-~~ia~~ 59 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA-RIIAGA 59 (413)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHH
Confidence 36789999999999998 455543
No 192
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.32 E-value=0.12 Score=51.23 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=26.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 20 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 50 (239)
T cd03296 20 DVSLDIPSGELVALLGPSGSGKTTLL-RLIAG 50 (239)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 34578889999999999999999998 66664
No 193
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=92.30 E-value=0.12 Score=51.25 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=25.3
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 49 (242)
T PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLL-RVLN 49 (242)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 3477889999999999999999998 6665
No 194
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.30 E-value=0.12 Score=50.22 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=26.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.|.+|+..+|+|++|+|||||+ .+|+..
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~ 51 (207)
T PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLL-RLIAGL 51 (207)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 34568889999999999999999997 777643
No 195
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.28 E-value=0.11 Score=50.23 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=25.2
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl-~~l~G 48 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLL-RCINL 48 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 467889999999999999999998 66663
No 196
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.26 E-value=0.11 Score=50.88 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=25.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~ 47 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLL-KTLM 47 (230)
T ss_pred ceeeEECCCCEEEEECCCCCCHHHHH-HHHh
Confidence 44577899999999999999999998 6555
No 197
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.25 E-value=0.11 Score=51.08 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=25.4
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 49 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLL-RCLNG 49 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 467889999999999999999998 66663
No 198
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.18 E-value=0.11 Score=51.65 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=26.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ ..|+.
T Consensus 22 ~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 52 (253)
T PRK14267 22 GVDLKIPQNGVFALMGPSGCGKSTLL-RTFNR 52 (253)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 33578899999999999999999998 66653
No 199
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.17 E-value=0.34 Score=52.28 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=25.8
Q ss_pred ceeeeee-eeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 194 IKAVDSL-VPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 194 IraID~l-~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.+++.. ..+.+|+-++++|++|+||||++ ..++..
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTti-akLA~~ 160 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTT-AKLAAR 160 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHH-HHHHHH
Confidence 3344333 34668999999999999999998 455543
No 200
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.13 E-value=0.13 Score=45.89 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=25.0
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
=+.+-+|+..+|+|++|+|||||+ ..|+..
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl-~~l~g~ 34 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLL-KALAGL 34 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHH-HHHTTS
T ss_pred EEEEcCCCEEEEEccCCCccccce-eeeccc
Confidence 356789999999999999999998 556543
No 201
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.09 E-value=0.13 Score=50.63 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=25.8
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~ 47 (235)
T cd03261 18 GVDLDVRRGEILAIIGPSGSGKSTLL-RLIV 47 (235)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 34468899999999999999999998 6665
No 202
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.05 E-value=0.79 Score=43.88 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=15.3
Q ss_pred eeeeeccCCCCchHhHH
Q psy13776 208 RELIIGDRQTGKTALAI 224 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~ 224 (539)
+++|+|++|+|||++|.
T Consensus 3 ~ili~G~~~sGKS~~a~ 19 (170)
T PRK05800 3 LILVTGGARSGKSRFAE 19 (170)
T ss_pred EEEEECCCCccHHHHHH
Confidence 57899999999999983
No 203
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=92.04 E-value=0.13 Score=51.52 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=26.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 54 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLL-NALSA 54 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 44578899999999999999999998 66664
No 204
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.03 E-value=0.12 Score=51.41 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=26.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|..
T Consensus 21 ~is~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G 51 (250)
T PRK14247 21 GVNLEIPDNTITALMGPSGSGKSTLL-RVFNR 51 (250)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 33467889999999999999999998 66664
No 205
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.01 E-value=0.5 Score=48.12 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=17.7
Q ss_pred eeeeeccCCCCchHhHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~ 228 (539)
|+.|+|++|+|||+++++.+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 778999999999999865443
No 206
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.00 E-value=0.13 Score=50.11 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=26.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G 48 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTI-KMLTT 48 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 44578889999999999999999998 66653
No 207
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=91.99 E-value=0.29 Score=49.05 Aligned_cols=20 Identities=35% Similarity=0.310 Sum_probs=16.9
Q ss_pred ccceeeeeccCCCCchHhHH
Q psy13776 205 RGQRELIIGDRQTGKTALAI 224 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~ 224 (539)
..+.++|.|.+|+|||+||.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~ 37 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLAR 37 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeee
Confidence 34567999999999999994
No 208
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=91.97 E-value=0.27 Score=43.02 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.2
Q ss_pred eeeeccCCCCchHhHHHHHH
Q psy13776 209 ELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~ 228 (539)
+-|.|++|+|||+++ ..++
T Consensus 1 I~i~G~~G~GKS~l~-~~l~ 19 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA-KELA 19 (107)
T ss_pred CEEECCCCCCHHHHH-HHHH
Confidence 358999999999998 4444
No 209
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.97 E-value=0.13 Score=49.76 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=25.7
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 48 (213)
T cd03259 19 LSLTVEPGEFLALLGPSGCGKTTLL-RLIAG 48 (213)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66663
No 210
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=91.95 E-value=0.14 Score=49.85 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=26.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|...
T Consensus 22 ~i~~~i~~G~~~~i~G~nGsGKSTLl-~~i~G~ 53 (220)
T cd03245 22 NVSLTIRAGEKVAIIGRVGSGKSTLL-KLLAGL 53 (220)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcC
Confidence 34467889999999999999999998 666643
No 211
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.95 E-value=0.12 Score=50.62 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=25.2
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+.+|++.+|+|++|+|||||+ ..|+.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 48 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTF-YMIVG 48 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 477889999999999999999998 66653
No 212
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.93 E-value=0.12 Score=51.43 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=24.7
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
=+.+.+|+..+|+|++|+|||||+ .+|+
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~ 52 (252)
T PRK14255 25 DLDFNQNEITALIGPSGCGKSTYL-RTLN 52 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 467889999999999999999998 6665
No 213
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.91 E-value=0.14 Score=50.52 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=25.1
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|.
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 48 (236)
T TIGR03864 20 VSFTVRPGEFVALLGPNGAGKSTLF-SLLT 48 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 3467889999999999999999998 6665
No 214
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.90 E-value=0.14 Score=49.63 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=25.4
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ ..|+.
T Consensus 21 is~~i~~G~~~~l~G~nGsGKSTLl-~~i~G 50 (214)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLL-KLLYG 50 (214)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66653
No 215
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.90 E-value=0.14 Score=49.71 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=25.5
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|.|++|+|||||+ .+|+
T Consensus 23 ~~sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 52 (218)
T cd03266 23 GVSFTVKPGEVTGLLGPNGAGKTTTL-RMLA 52 (218)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHH-HHHh
Confidence 33477889999999999999999998 6665
No 216
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.88 E-value=0.37 Score=49.25 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=19.5
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.+.+.+.|++|+|||+|+ ..|+++.
T Consensus 30 ~~~~ll~Gp~G~GKT~la-~~ia~~~ 54 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLA-HIIANEM 54 (305)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHh
Confidence 355789999999999998 4566543
No 217
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.87 E-value=0.15 Score=51.23 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=25.8
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.|.+|+..+|+|++|+|||||+ .+|+.
T Consensus 31 vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 60 (259)
T PRK14274 31 INLSIPENEVTAIIGPSGCGKSTFI-KTLNL 60 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 3467889999999999999999998 66664
No 218
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.87 E-value=0.14 Score=49.31 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=25.1
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 48 (205)
T cd03226 20 SLDLYAGEIIALTGKNGAGKTTLA-KILAG 48 (205)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 457889999999999999999998 66664
No 219
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.87 E-value=0.16 Score=49.18 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=28.0
Q ss_pred eeeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 197 VDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 197 ID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+|.=+.+.+|++.+|+|++|+|||||+ .+|..
T Consensus 15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~g 46 (211)
T cd03298 15 MHFDLTFAQGEITAIVGPSGSGKSTLL-NLIAG 46 (211)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 377789999999999999999999998 66664
No 220
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=91.82 E-value=0.12 Score=50.81 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=24.7
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
=+.+.+|+..+|+|++|+|||||+ ..|+
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl-~~l~ 47 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLF-NLIS 47 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHH-HHHc
Confidence 467889999999999999999998 6665
No 221
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.81 E-value=0.14 Score=50.39 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=25.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 53 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLI-RCING 53 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 477889999999999999999998 66653
No 222
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=91.77 E-value=0.14 Score=50.37 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=26.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+..
T Consensus 21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~ 52 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVV-SLLERF 52 (238)
T ss_pred ceEEEecCCCEEEEEeCCCCCHHHHH-HHHhcc
Confidence 34567889999999999999999998 667643
No 223
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.76 E-value=0.14 Score=49.86 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=25.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.|-+|+..+|+|++|+|||||+ .+|..
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl-~~l~G 52 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLL-RIIAG 52 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 467889999999999999999998 66664
No 224
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.76 E-value=0.14 Score=49.22 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=26.9
Q ss_pred eeeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 197 VDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 197 ID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.|.=+.+-+|++.+|.|++|+|||||+ .+|+.
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 48 (195)
T PRK13541 17 FDLSITFLPSAITYIKGANGCGKSSLL-RMIAG 48 (195)
T ss_pred EEEEEEEcCCcEEEEECCCCCCHHHHH-HHHhc
Confidence 344567889999999999999999998 66664
No 225
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=91.73 E-value=0.15 Score=50.46 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|..
T Consensus 21 ~~sl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 51 (241)
T PRK10895 21 DVSLTVNSGEIVGLLGPNGAGKTTTF-YMVVG 51 (241)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 33478889999999999999999998 66664
No 226
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.72 E-value=0.15 Score=49.29 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=25.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ ..|+.
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 48 (213)
T cd03301 19 LNLDIADGEFVVLLGPSGCGKTTTL-RMIAG 48 (213)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66664
No 227
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.70 E-value=0.16 Score=49.93 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=25.5
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 49 (234)
T cd03251 20 DISLDIPAGETVALVGPSGSGKSTLV-NLIP 49 (234)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 33567889999999999999999998 6665
No 228
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=91.69 E-value=0.15 Score=50.37 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=25.8
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~ 48 (240)
T PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLL-RCIN 48 (240)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHH-HHHh
Confidence 34577889999999999999999998 6665
No 229
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.67 E-value=0.14 Score=50.69 Aligned_cols=29 Identities=41% Similarity=0.496 Sum_probs=24.8
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
=+.+.+|+..+|+|++|+|||||+...|.
T Consensus 15 sl~i~~Ge~~~l~G~sGsGKSTL~~~~i~ 43 (226)
T cd03270 15 DVDIPRNKLVVITGVSGSGKSSLAFDTIY 43 (226)
T ss_pred eeecCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 47788999999999999999999755553
No 230
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.65 E-value=0.16 Score=51.27 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=25.7
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 49 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLL-NLIAG 49 (255)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66663
No 231
>PRK08118 topology modulation protein; Reviewed
Probab=91.63 E-value=0.14 Score=48.66 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=20.0
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+|+.|+|++|+||||+| ..+.+..
T Consensus 2 ~rI~I~G~~GsGKSTla-k~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLA-RQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHH-HHHHHHh
Confidence 68999999999999998 5666543
No 232
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.62 E-value=0.14 Score=49.89 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=25.4
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|..
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 53 (228)
T cd03257 24 VSFSIKKGETLGLVGESGSGKSTLA-RAILG 53 (228)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3467789999999999999999998 66653
No 233
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.61 E-value=0.17 Score=47.77 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=25.4
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G 48 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLI-KIILG 48 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 3467789999999999999999998 66653
No 234
>PRK08727 hypothetical protein; Validated
Probab=91.59 E-value=1.3 Score=44.30 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=19.7
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+-+.|.|++|+|||+|+ ..++++..
T Consensus 42 ~~l~l~G~~G~GKThL~-~a~~~~~~ 66 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA-LALCAAAE 66 (233)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 34789999999999998 56666543
No 235
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=0.4 Score=51.50 Aligned_cols=94 Identities=28% Similarity=0.413 Sum_probs=55.1
Q ss_pred eeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCC-ccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEE
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCA-MGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYV 287 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~-~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~ 287 (539)
+++.|++|||||-|| .+++||+++. + -+..|.. +-.|+.+ | =.+.-|++.-|.. +...+||.
T Consensus 188 VLLYGPPGTGKTLLA-kAVA~~T~At-----F-IrvvgSElVqKYiGE-G---aRlVRelF~lAre------kaPsIIFi 250 (406)
T COG1222 188 VLLYGPPGTGKTLLA-KAVANQTDAT-----F-IRVVGSELVQKYIGE-G---ARLVRELFELARE------KAPSIIFI 250 (406)
T ss_pred eEeeCCCCCcHHHHH-HHHHhccCce-----E-EEeccHHHHHHHhcc-c---hHHHHHHHHHHhh------cCCeEEEE
Confidence 578999999999999 8899988641 1 1222221 1111111 1 1234455555554 23345555
Q ss_pred ----eeccch------------hHHHHHHHHHhcCCCCceEEEEEecC
Q psy13776 288 ----AIGQKR------------STVAQIVKRLTDSGAMGYTIIVSATA 319 (539)
Q Consensus 288 ----~IGer~------------~ev~e~~~~l~~~~~~~~tvvV~ata 319 (539)
|||-|+ |+.-|++..|.+-....+.=|+.||.
T Consensus 251 DEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 251 DEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred echhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC
Confidence 777654 33445556666667777888888885
No 236
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.55 E-value=0.17 Score=49.93 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=25.8
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 57 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLL-HLLGG 57 (233)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHH-HHHhc
Confidence 3467889999999999999999998 66663
No 237
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=91.53 E-value=0.16 Score=50.64 Aligned_cols=31 Identities=16% Similarity=0.408 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 48 (252)
T TIGR03005 18 GLNFSVAAGEKVALIGPSGSGKSTIL-RILMT 48 (252)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 44578889999999999999999998 66653
No 238
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.52 E-value=0.14 Score=50.39 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=25.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.|.+|+..+|+|++|+|||||+ .+|+.
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 48 (243)
T TIGR01978 19 VNLTVKKGEIHAIMGPNGSGKSTLS-KTIAG 48 (243)
T ss_pred cceEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66653
No 239
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=91.50 E-value=0.14 Score=49.44 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|++.+|+|++|+|||||+ ..|+
T Consensus 18 ~is~~i~~Ge~~~i~G~nGsGKStLl-~~l~ 47 (200)
T cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLA-KTIM 47 (200)
T ss_pred ccceEECCCcEEEEECCCCCCHHHHH-HHHh
Confidence 33568899999999999999999997 6665
No 240
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.49 E-value=0.16 Score=49.76 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=26.3
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+..
T Consensus 29 ~s~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl 59 (228)
T PRK10584 29 VELVVKRGETIALIGESGSGKSTLL-AILAGL 59 (228)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHH-HHHHcC
Confidence 3477889999999999999999998 667643
No 241
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.49 E-value=0.18 Score=47.33 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=25.2
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+-+|+..+|+|++|+|||||+ .+|..
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G 48 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLM-KILSG 48 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 477889999999999999999998 66653
No 242
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=91.48 E-value=0.16 Score=50.13 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=25.5
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 5 vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 34 (230)
T TIGR02770 5 LNLSLKRGEVLALVGESGSGKSLTC-LAILG 34 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 3467789999999999999999998 66663
No 243
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=91.48 E-value=0.16 Score=50.01 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=26.0
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 50 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLT-KLIQR 50 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 33567889999999999999999998 66663
No 244
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.47 E-value=0.17 Score=48.75 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=26.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|++.+|+|++|+|||||+ .+|+.
T Consensus 23 ~~s~~i~~G~~~~i~G~nG~GKSTLl-~~i~G 53 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLL-SALLG 53 (204)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 34577889999999999999999998 66664
No 245
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.47 E-value=0.18 Score=47.48 Aligned_cols=31 Identities=32% Similarity=0.434 Sum_probs=26.1
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+..
T Consensus 21 ~~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~ 51 (173)
T cd03246 21 VSFSIEPGESLAIIGPSGSGKSTLA-RLILGL 51 (173)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHH-HHHHhc
Confidence 3467889999999999999999998 666643
No 246
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=91.44 E-value=0.17 Score=51.31 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ ..|+.
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 55 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLL-RLIGG 55 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 44678899999999999999999998 66663
No 247
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=91.44 E-value=0.16 Score=50.57 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=26.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|..
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G 51 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFL-RTLNR 51 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 55678889999999999999999998 66663
No 248
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.43 E-value=0.19 Score=47.61 Aligned_cols=32 Identities=16% Similarity=0.414 Sum_probs=26.5
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|...
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~ 51 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLL-QLLTGD 51 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHH-HHHhcc
Confidence 44567779999999999999999998 666643
No 249
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.40 E-value=0.17 Score=48.70 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=25.1
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+.+|++.+|.|++|+|||||+ .++.
T Consensus 14 isl~i~~G~~~~l~G~nG~GKSTLl-~~il 42 (176)
T cd03238 14 LDVSIPLNVLVVVTGVSGSGKSTLV-NEGL 42 (176)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 3578999999999999999999998 5554
No 250
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.40 E-value=0.18 Score=50.06 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=25.3
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|.
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 48 (242)
T cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTM-KMIN 48 (242)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHH-HHHh
Confidence 3477889999999999999999998 6665
No 251
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.39 E-value=2.1 Score=42.55 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=19.0
Q ss_pred cceeeeeccCCCCchHhHHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|+=-+|+|++|+|||+|+++..++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHH
Confidence 344579999999999999866554
No 252
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=91.38 E-value=0.16 Score=50.44 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=25.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 51 (250)
T PRK11264 22 IDLEVKPGEVVAIIGPSGSGKTTLL-RCINL 51 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 3477889999999999999999998 66653
No 253
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.38 E-value=0.16 Score=49.47 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|++.+|+|++|+|||||+ .+|+
T Consensus 29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~ 58 (214)
T PRK13543 29 PLDFHVDAGEALLVQGDNGAGKTTLL-RVLA 58 (214)
T ss_pred cceEEECCCCEEEEEcCCCCCHHHHH-HHHh
Confidence 34477889999999999999999998 6665
No 254
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.35 E-value=0.18 Score=48.70 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=25.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|..
T Consensus 19 ~~~~i~~G~~~~i~G~nGsGKSTLl-~~l~G 48 (208)
T cd03268 19 ISLHVKKGEIYGFLGPNGAGKTTTM-KIILG 48 (208)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66663
No 255
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=91.35 E-value=0.17 Score=49.79 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=26.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|++.+|+|++|+|||||+ ..|.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~ 46 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLL-NLIA 46 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 56788999999999999999999998 5554
No 256
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.35 E-value=0.15 Score=49.40 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.4
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
=+.+.+|+..+|+|++|+|||||+ .+|+
T Consensus 19 sl~i~~Ge~~~l~G~nGsGKSTLl-~~l~ 46 (213)
T cd03235 19 SFEVKPGEFLAIVGPNGAGKSTLL-KAIL 46 (213)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHH-HHHc
Confidence 367889999999999999999998 5555
No 257
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.34 E-value=0.18 Score=49.52 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=26.0
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 6 vs~~i~~Ge~~~l~G~NGsGKSTLl-k~i~G 35 (213)
T PRK15177 6 TDFVMGYHEHIGILAAPGSGKTTLT-RLLCG 35 (213)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3477899999999999999999998 67764
No 258
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.34 E-value=0.17 Score=50.23 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 51 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLI-KLINR 51 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 44577889999999999999999998 66653
No 259
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.31 E-value=0.18 Score=50.11 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=26.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|.+|+..+|+|++|+|||||+ .+|+.
T Consensus 21 ~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 51 (250)
T PRK14266 21 NVNLDIPKNSVTALIGPSGCGKSTFI-RTLNR 51 (250)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 44577889999999999999999998 77764
No 260
>PRK12377 putative replication protein; Provisional
Probab=91.31 E-value=0.36 Score=49.20 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=19.2
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+-+.|.|++|||||+|| ..|+|..
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 45689999999999999 5666654
No 261
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.26 E-value=0.18 Score=49.01 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=26.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 50 (220)
T cd03263 20 DLSLNVYKGEIFGLLGHNGAGKTTTL-KMLTG 50 (220)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 33577889999999999999999998 66663
No 262
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.25 E-value=0.18 Score=50.18 Aligned_cols=30 Identities=33% Similarity=0.337 Sum_probs=25.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 22 i~~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G 51 (250)
T PRK14262 22 VTMKIFKNQITAIIGPSGCGKTTLL-RSINR 51 (250)
T ss_pred eeEeecCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 3467889999999999999999998 66663
No 263
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=91.25 E-value=0.18 Score=49.32 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=25.1
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.|.+|+..+|+|++|+|||||+ .+|..
T Consensus 34 s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 62 (226)
T cd03248 34 SFTLHPGEVTALVGPSGSGKSTVV-ALLEN 62 (226)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 367889999999999999999998 66653
No 264
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.25 E-value=0.18 Score=47.95 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.5
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ ..|+.
T Consensus 19 vs~~i~~G~~~~i~G~nGsGKSTLl-~~l~G 48 (182)
T cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELA-EALFG 48 (182)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66653
No 265
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=91.23 E-value=3.4 Score=42.00 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=19.7
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|.+|+|||+|. ..|.++.
T Consensus 33 ~IllvG~tGvGKSSli-NaLlg~~ 55 (249)
T cd01853 33 TILVLGKTGVGKSSTI-NSIFGER 55 (249)
T ss_pred EEEEECCCCCcHHHHH-HHHhCCC
Confidence 7889999999999996 7777654
No 266
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=91.21 E-value=0.19 Score=48.97 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=25.8
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
=+.|.+|+..+|+|++|+|||||+ .+|+..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~ 50 (218)
T cd03290 21 NIRIPTGQLTMIVGQVGCGKSSLL-LAILGE 50 (218)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH-HHHhcc
Confidence 467889999999999999999998 777643
No 267
>PRK10908 cell division protein FtsE; Provisional
Probab=91.18 E-value=0.19 Score=49.14 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=25.2
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 50 (222)
T PRK10908 22 TFHMRPGEMAFLTGHSGAGKSTLL-KLICG 50 (222)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 467889999999999999999998 66663
No 268
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=91.18 E-value=0.16 Score=51.17 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=25.1
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 58 (265)
T PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLL-KMLG 58 (265)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHH-HHHc
Confidence 3477889999999999999999998 5555
No 269
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.17 E-value=0.58 Score=51.11 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=31.1
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHH
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAID 225 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~ 225 (539)
...+.||+.-.|=.+- +.+|+-++|=|++|.|||||++.
T Consensus 72 ~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQ 112 (456)
T COG1066 72 EPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQ 112 (456)
T ss_pred cccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHH
Confidence 4456778877776653 46799999999999999999974
No 270
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=91.16 E-value=0.18 Score=50.47 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=26.0
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 22 ~isl~i~~Ge~~~i~G~nGsGKSTLl-~~laG 52 (258)
T PRK14241 22 DVNLNIEPRSVTAFIGPSGCGKSTVL-RTLNR 52 (258)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHH-HHHhc
Confidence 33577889999999999999999998 66653
No 271
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.16 E-value=0.18 Score=44.00 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.3
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++|.|.+|+||||++ ..++++
T Consensus 1 vI~I~G~~gsGKST~a-~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA-KELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHH
T ss_pred CEEEECCCCCCHHHHH-HHHHHH
Confidence 4789999999999998 566654
No 272
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=91.10 E-value=0.18 Score=49.52 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=26.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|+.
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 55 (225)
T PRK10247 25 NISFSLRAGEFKLITGPSGCGKSTLL-KIVAS 55 (225)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 34577889999999999999999998 66653
No 273
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=91.08 E-value=0.19 Score=49.99 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|.
T Consensus 23 ~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 52 (252)
T PRK14239 23 SVSLDFYPNEITALIGPSGSGKSTLL-RSIN 52 (252)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHH-HHHh
Confidence 34477889999999999999999998 6665
No 274
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=91.06 E-value=0.2 Score=49.66 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=25.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+.+|++.+|+|++|+|||||+ ++|..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G 48 (237)
T TIGR00968 20 NLEVPTGSLVALLGPSGSGKSTLL-RIIAG 48 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 367899999999999999999997 76763
No 275
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=91.03 E-value=0.19 Score=48.62 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=25.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|++.+|+|++|+|||||+ ..|..
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 48 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLL-RILAG 48 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 34467889999999999999999997 66654
No 276
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.01 E-value=0.19 Score=49.59 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=25.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|..
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 50 (242)
T TIGR03411 21 LSLYVDPGELRVIIGPNGAGKTTMM-DVITG 50 (242)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 3468899999999999999999998 66653
No 277
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.01 E-value=0.18 Score=48.51 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|++.+|+|++|+|||||+ .+|+.
T Consensus 27 ~~~~~i~~Ge~~~l~G~nGsGKStLl-~~i~G 57 (194)
T cd03213 27 NVSGKAKPGELTAIMGPSGAGKSTLL-NALAG 57 (194)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 33477889999999999999999998 76763
No 278
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=90.98 E-value=0.19 Score=49.94 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=26.0
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|..
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 49 (247)
T TIGR00972 19 NINLDIPKNQVTALIGPSGCGKSTLL-RSLNR 49 (247)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 33577889999999999999999998 66653
No 279
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=90.97 E-value=0.2 Score=50.87 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=26.8
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|...
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl 56 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLF-KALMGF 56 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 44578889999999999999999998 666643
No 280
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.96 E-value=0.2 Score=49.89 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=25.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|.
T Consensus 23 ~is~~i~~Ge~~~I~G~nGsGKSTLl-~~i~ 52 (251)
T PRK14244 23 DINLDIYKREVTAFIGPSGCGKSTFL-RCFN 52 (251)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHH
Confidence 33467889999999999999999998 6665
No 281
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=90.94 E-value=0.19 Score=47.22 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=26.0
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|++.+|.|++|+|||||+ .+|..
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 49 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLF-RALAG 49 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 33477889999999999999999998 66653
No 282
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=90.94 E-value=0.2 Score=49.95 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=25.2
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 54 (253)
T PRK14242 26 SLEFEQNQVTALIGPSGCGKSTFL-RCLNR 54 (253)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 467889999999999999999998 66664
No 283
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=90.93 E-value=0.19 Score=50.00 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=26.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 23 ~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 53 (255)
T PRK11300 23 NVNLEVREQEIVSLIGPNGAGKTTVF-NCLTG 53 (255)
T ss_pred eeeeEEcCCeEEEEECCCCCCHHHHH-HHHhC
Confidence 33467889999999999999999998 66663
No 284
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=1 Score=48.49 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=24.3
Q ss_pred CChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHH
Q psy13776 321 DAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 358 (539)
Q Consensus 321 ~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A 358 (539)
.+|.........=..+-++|..+++.+++++|.+-...
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~ 136 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALV 136 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhc
Confidence 33443444444444566677778999999999775543
No 285
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=90.91 E-value=0.2 Score=49.52 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.1
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+.+|+..+|+|++|+|||||+ .+|..
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 33 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLL-NLISG 33 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 467889999999999999999998 66664
No 286
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=90.91 E-value=0.19 Score=50.27 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~ 50 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTC-AAAL 50 (254)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 33478899999999999999999998 6665
No 287
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=90.90 E-value=0.2 Score=50.70 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=26.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ ..|+.
T Consensus 30 ~isl~i~~Ge~~~I~G~NGsGKSTLl-k~l~G 60 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLL-RLLAG 60 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 34567889999999999999999998 66653
No 288
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.89 E-value=0.19 Score=50.16 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=25.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.|-+|+..+|+|++|+|||||+ .+|+.
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 55 (254)
T PRK14273 27 NIKILKNSITALIGPSGCGKSTFL-RTLNR 55 (254)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 467889999999999999999998 66664
No 289
>PRK07261 topology modulation protein; Provisional
Probab=90.88 E-value=0.18 Score=47.94 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=18.8
Q ss_pred ceeeeeccCCCCchHhHHHHHHH
Q psy13776 207 QRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+|++|+|.+|+|||||+ ..+..
T Consensus 1 ~ri~i~G~~GsGKSTla-~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLA-RKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHH-HHHHH
Confidence 58999999999999999 55553
No 290
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.86 E-value=0.19 Score=49.89 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=26.0
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
=+.|.+|+..+|+|++|+|||||+ .+|...
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl 52 (249)
T PRK14253 23 NLPIPARQVTALIGPSGCGKSTLL-RCLNRM 52 (249)
T ss_pred eEEecCCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 467889999999999999999998 777643
No 291
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.86 E-value=0.2 Score=50.59 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=25.2
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 69 (268)
T PRK14248 41 SMDIEKHAVTALIGPSGCGKSTFL-RSINR 69 (268)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 467789999999999999999998 67764
No 292
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=90.86 E-value=0.19 Score=49.24 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.4
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-+.+-+|.+++|.||+|+|||||. .++++-
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStll-k~va~L 52 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLL-KIVASL 52 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHH-HHHHhc
Confidence 467789999999999999999997 666643
No 293
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=90.84 E-value=0.2 Score=52.59 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=27.1
Q ss_pred eeee-eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 196 AVDS-LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 196 aID~-l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+++. =+.|.+|+..+|+|++|+|||||+ .+|..
T Consensus 22 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl-~~i~G 55 (330)
T PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIA-KAICG 55 (330)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHH-HHHHc
Confidence 4443 468999999999999999999998 66654
No 294
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=90.83 E-value=0.21 Score=50.46 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=25.8
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 39 vsl~i~~Ge~~~I~G~nGsGKSTLl-~~l~G 68 (267)
T PRK14237 39 IDMQFEKNKITALIGPSGSGKSTYL-RSLNR 68 (267)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 3477889999999999999999998 66654
No 295
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.80 E-value=0.21 Score=50.65 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=25.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 57 (271)
T PRK13632 29 SFEINEGEYVAILGHNGSGKSTIS-KILTG 57 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 467889999999999999999998 66663
No 296
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.79 E-value=2.1 Score=47.01 Aligned_cols=142 Identities=15% Similarity=0.075 Sum_probs=69.2
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhh-----HHHHhhhcc
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSK-----QAVAYRQDE 278 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~-----~a~~~~~~~ 278 (539)
.++.+++++|+.|+||||++ ..++.+... .++.+.++.-|-.+ |-..|....
T Consensus 239 ~~~~vI~LVGptGvGKTTTi-aKLA~~L~~----------------------~GkkVglI~aDt~RiaAvEQLk~yae~l 295 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTL-AKMAWQFHG----------------------KKKTVGFITTDHSRIGTVQQLQDYVKTI 295 (436)
T ss_pred cCCcEEEEECCCCCcHHHHH-HHHHHHHHH----------------------cCCcEEEEecCCcchHHHHHHHHHhhhc
Confidence 34578999999999999998 445433221 11222222222111 112222221
Q ss_pred cCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHH-HCCCcEEEEecChhHH
Q psy13776 279 KKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQ 357 (539)
Q Consensus 279 ~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFr-d~GkdVLli~DslTr~ 357 (539)
+ +-++++ ....++.+.++.+.+.. ++-+|++-|+-.++-..- .--.+.+.+. ....++++++|..++.
T Consensus 296 --g-ipv~v~--~d~~~L~~aL~~lk~~~--~~DvVLIDTaGRs~kd~~----lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 296 --G-FEVIAV--RDEAAMTRALTYFKEEA--RVDYILIDTAGKNYRASE----TVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred --C-CcEEec--CCHHHHHHHHHHHHhcc--CCCEEEEeCccccCcCHH----HHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 1 222222 45666766666665321 245777777655442211 1111233332 2355788999987776
Q ss_pred HHHhHHhhhccCCCCCCCCCCCchhhc
Q psy13776 358 AVAYRQMSLLLRRPPGREAYPGDVFYL 384 (539)
Q Consensus 358 A~A~Reisl~lgepP~r~gyPg~vf~~ 384 (539)
-.... +...+.. -++-+-+|+.
T Consensus 365 ~d~~~-i~~~F~~----~~idglI~TK 386 (436)
T PRK11889 365 KDMIE-IITNFKD----IHIDGIVFTK 386 (436)
T ss_pred HHHHH-HHHHhcC----CCCCEEEEEc
Confidence 55443 3333333 2344445443
No 297
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=90.78 E-value=0.19 Score=50.01 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=25.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|++.+|+|++|+|||||+ .+|+.
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 51 (253)
T TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLL-GCLAG 51 (253)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 33467889999999999999999998 66653
No 298
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.74 E-value=0.21 Score=50.74 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=25.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 26 is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G 55 (280)
T PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIM-QLLNG 55 (280)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66653
No 299
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.74 E-value=0.21 Score=51.11 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=25.8
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 30 is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 59 (289)
T PRK13645 30 TSLTFKKNKVTCVIGTTGSGKSTMI-QLTNG 59 (289)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 3467889999999999999999998 66664
No 300
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=90.72 E-value=0.22 Score=50.56 Aligned_cols=31 Identities=23% Similarity=0.257 Sum_probs=26.3
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.=+.|-+|++.+|+|++|+|||||+ .+|+..
T Consensus 43 vsl~i~~Ge~~~I~G~nGsGKSTLl-~~i~Gl 73 (271)
T PRK14238 43 INLDIHENEVTAIIGPSGCGKSTYI-KTLNRM 73 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 3467889999999999999999998 677643
No 301
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=90.71 E-value=0.2 Score=50.58 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=26.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|++.+|+|++|+|||||+ .+|+.
T Consensus 28 ~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 58 (264)
T PRK14243 28 NVWLDIPKNQITAFIGPSGCGKSTIL-RCFNR 58 (264)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 33477889999999999999999998 66663
No 302
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.70 E-value=0.22 Score=48.93 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=26.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+..
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl 50 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTIL-RLLFRF 50 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcc
Confidence 44567889999999999999999998 666643
No 303
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.70 E-value=0.22 Score=50.37 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=27.0
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+..
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl-~~i~Gl 58 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIA-KLMIGI 58 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcC
Confidence 44577889999999999999999998 677643
No 304
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=90.68 E-value=0.2 Score=50.73 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=26.0
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|++.+|+|++|+|||||+ .+|+
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 59 (268)
T PRK10419 30 NVSLSLKSGETVALLGRSGCGKSTLA-RLLV 59 (268)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 44578889999999999999999998 6665
No 305
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=90.66 E-value=0.21 Score=48.77 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=25.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|+..+|.|++|+|||||+ .+|.
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~i~ 55 (224)
T TIGR02324 26 NVSLTVNAGECVALSGPSGAGKSTLL-KSLY 55 (224)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHH-HHHh
Confidence 33478889999999999999999998 6665
No 306
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=90.66 E-value=0.23 Score=47.09 Aligned_cols=31 Identities=29% Similarity=0.406 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|++.+|.|++|+|||||+ ..|..
T Consensus 17 ~~~~~i~~G~~~~l~G~nGsGKStLl-~~i~G 47 (180)
T cd03214 17 DLSLSIEAGEIVGILGPNGAGKSTLL-KTLAG 47 (180)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 33466789999999999999999997 66653
No 307
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=90.64 E-value=0.21 Score=50.22 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=25.1
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G 50 (258)
T PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLL-RALSG 50 (258)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 467889999999999999999998 66663
No 308
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=90.64 E-value=0.19 Score=50.76 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=25.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+.+|++.+|+|++|+|||||+ .+|+.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G 55 (265)
T PRK10253 27 TVEIPDGHFTAIIGPNGCGKSTLL-RTLSR 55 (265)
T ss_pred ceEECCCCEEEEECCCCCCHHHHH-HHHcC
Confidence 477889999999999999999998 66653
No 309
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=90.62 E-value=0.23 Score=50.03 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=26.3
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+..
T Consensus 23 vs~~i~~Ge~~~I~G~NGsGKSTLl-~~i~Gl 53 (251)
T PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLV-RVVLGL 53 (251)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHH-HHHhCC
Confidence 3477889999999999999999998 667643
No 310
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.61 E-value=0.21 Score=49.80 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=25.0
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.|-+|+..+|+|++|+|||||+ .+|+.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 52 (252)
T PRK14256 24 SMDFPENSVTAIIGPSGCGKSTVL-RSINR 52 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 367889999999999999999998 66654
No 311
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=90.61 E-value=0.22 Score=49.42 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=25.7
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 40 vs~~i~~Ge~~~i~G~NGsGKSTLl-~~i~G 69 (236)
T cd03267 40 ISFTIEKGEIVGFIGPNGAGKTTTL-KILSG 69 (236)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66664
No 312
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=90.61 E-value=0.22 Score=52.42 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|.+|+..+|+|++|+|||||+ .+|+.
T Consensus 33 ~vsl~i~~Ge~~~IvG~sGsGKSTLl-~~l~g 63 (327)
T PRK11308 33 GVSFTLERGKTLAVVGESGCGKSTLA-RLLTM 63 (327)
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHH-HHHHc
Confidence 34577889999999999999999998 66654
No 313
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.60 E-value=0.22 Score=49.64 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=25.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 52 (251)
T PRK14270 24 NLPIYENKITALIGPSGCGKSTFL-RCLNR 52 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 467889999999999999999998 66664
No 314
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.56 E-value=0.23 Score=49.61 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=25.3
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|.
T Consensus 25 vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 53 (253)
T PRK14261 25 ITISIPKNRVTALIGPSGCGKSTLL-RCFN 53 (253)
T ss_pred eEEEECCCcEEEEECCCCCCHHHHH-HHHh
Confidence 3467889999999999999999998 6665
No 315
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.56 E-value=0.23 Score=50.94 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=26.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+..
T Consensus 25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl-~~l~Gl 56 (287)
T PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLM-QHFNAL 56 (287)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcC
Confidence 34477889999999999999999998 777643
No 316
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.56 E-value=0.62 Score=54.52 Aligned_cols=67 Identities=9% Similarity=0.101 Sum_probs=37.9
Q ss_pred chhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHH--HCCCcEEEEecChhHHHHHhHHhhhccC
Q psy13776 292 KRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR--DNGKHALIIYDDLSKQAVAYRQMSLLLR 369 (539)
Q Consensus 292 r~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFr--d~GkdVLli~DslTr~A~A~Reisl~lg 369 (539)
...++.+.++.+.+ +-+|++-|+-.++-..-+.-.. + .+. ..-.++++++|..++ .+..+|+.....
T Consensus 250 ~~~~l~~al~~~~~-----~D~VLIDTAGRs~~d~~l~eel----~-~l~~~~~p~e~~LVLsAt~~-~~~l~~i~~~f~ 318 (767)
T PRK14723 250 DAADLRFALAALGD-----KHLVLIDTVGMSQRDRNVSEQI----A-MLCGVGRPVRRLLLLNAASH-GDTLNEVVHAYR 318 (767)
T ss_pred CHHHHHHHHHHhcC-----CCEEEEeCCCCCccCHHHHHHH----H-HHhccCCCCeEEEEECCCCc-HHHHHHHHHHHh
Confidence 45666666666543 4488888887666443322111 1 122 245689999998875 444555544443
No 317
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.55 E-value=0.23 Score=49.41 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=25.7
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.|-+|+..+|+|++|+|||||+ ..|+.
T Consensus 23 ~sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 52 (251)
T PRK14251 23 ISLDFEEKELTALIGPSGCGKSTFL-RCLNR 52 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHH-HHHhh
Confidence 3477889999999999999999998 66664
No 318
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.51 E-value=0.24 Score=49.32 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+..|+..+|+|++|+|||||+ .+|+.
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 50 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFL-RCFNR 50 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 34477889999999999999999998 66664
No 319
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=90.50 E-value=0.24 Score=48.40 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=24.9
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+-+|+..+|+|++|+|||||+ ..|+.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 48 (223)
T TIGR03740 20 SLTVPKNSVYGLLGPNGAGKSTLL-KMITG 48 (223)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 467889999999999999999998 66653
No 320
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.50 E-value=2.7 Score=39.29 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=14.1
Q ss_pred eeeeccCCCCchHhHH
Q psy13776 209 ELIIGDRQTGKTALAI 224 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~ 224 (539)
+++.|++|+||||++.
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5788999999999984
No 321
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=90.47 E-value=0.23 Score=51.33 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=25.7
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 12 vs~~i~~Ge~~~l~G~NGaGKSTLl-~~l~G 41 (302)
T TIGR01188 12 VNFKVREGEVFGFLGPNGAGKTTTI-RMLTT 41 (302)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 3468889999999999999999998 66663
No 322
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.45 E-value=3.3 Score=41.48 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=26.8
Q ss_pred eeeeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 196 AVDSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 196 aID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.-|.-+.+..|++.+|.|+.+.||||++ .+|.
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll-~~i~ 52 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYI-RQVA 52 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHH-HHHH
Confidence 4577778889999999999999999987 4444
No 323
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=90.44 E-value=0.21 Score=50.25 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=25.2
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 23 vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G 52 (262)
T PRK09984 23 VDLNIHHGEMVALLGPSGSGKSTLL-RHLSG 52 (262)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHH-HHHhc
Confidence 3466789999999999999999998 66653
No 324
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.44 E-value=0.24 Score=49.72 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|-+|+..+|+|++|+|||||+ .+|..
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G 60 (258)
T PRK14268 30 NVSMQIPKNSVTALIGPSGCGKSTFI-RCLNR 60 (258)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 34477889999999999999999998 66663
No 325
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.43 E-value=0.22 Score=49.52 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=25.0
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+.+|+..+|+|++|+|||||+ .+|..
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G 52 (252)
T PRK14272 24 NLDVQRGTVNALIGPSGCGKTTFL-RAINR 52 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 467889999999999999999998 66653
No 326
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=90.43 E-value=0.25 Score=47.49 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=25.0
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+-+|+..+|+|++|+|||||+ ..|.
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 47 (198)
T TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLL-RILA 47 (198)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHH-HHHh
Confidence 4567889999999999999999998 5555
No 327
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=90.42 E-value=0.23 Score=52.30 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=26.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|.+|+..+|+|++|+|||||+ .+|+.
T Consensus 39 ~vsl~i~~Ge~~~lvG~sGsGKSTLl-k~i~G 69 (331)
T PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFA-RAIIG 69 (331)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHH-HHHHC
Confidence 55678999999999999999999998 66663
No 328
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=90.41 E-value=0.24 Score=48.77 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 40 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 70 (224)
T cd03220 40 DVSFEVPRGERIGLIGRNGAGKSTLL-RLLAG 70 (224)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 33467889999999999999999998 66663
No 329
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.40 E-value=0.24 Score=49.32 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~ 50 (250)
T PRK14245 21 GISMEIEEKSVVAFIGPSGCGKSTFL-RLFN 50 (250)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHH-HHHh
Confidence 33467889999999999999999998 6665
No 330
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.40 E-value=0.26 Score=45.45 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=26.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.-+.+.+|+..+|+|++|+|||||+ ..|..
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll-~~l~g 47 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLL-RAIAG 47 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 44577889999999999999999997 66654
No 331
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.39 E-value=0.22 Score=50.44 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+
T Consensus 19 ~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 48 (271)
T PRK13638 19 GLNLDFSLSPVTGLVGANGCGKSTLF-MNLS 48 (271)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHH-HHHc
Confidence 34577889999999999999999998 6555
No 332
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.38 E-value=0.24 Score=50.56 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=26.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl-~~l~G 69 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFL-RTLNR 69 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHH-HHHhc
Confidence 45578889999999999999999998 77764
No 333
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=90.38 E-value=0.24 Score=52.75 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=27.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+..
T Consensus 20 ~isl~i~~Ge~~~llGpsGsGKSTLL-r~IaGl 51 (353)
T PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLL-RIIAGL 51 (353)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 34578889999999999999999998 777754
No 334
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=90.34 E-value=0.2 Score=49.86 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=25.0
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G 55 (252)
T CHL00131 27 NLSINKGEIHAIMGPNGSGKSTLS-KVIAG 55 (252)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHH-HHHcC
Confidence 467889999999999999999998 66653
No 335
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.29 E-value=0.23 Score=47.95 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=26.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|.|++|+|||||+ .+|+.
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 49 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLL-RILAG 49 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 44577889999999999999999998 66663
No 336
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.28 E-value=0.23 Score=48.15 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|..
T Consensus 25 ~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 55 (202)
T cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLL-KALAN 55 (202)
T ss_pred eEEEEECCCcEEEEECCCCCCHHHHH-HHhcc
Confidence 33467789999999999999999998 66653
No 337
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.28 E-value=0.68 Score=48.31 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=18.7
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
..++|.|++|+|||+++ ..++++.
T Consensus 52 ~~~ll~GppG~GKT~la-~~ia~~l 75 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA-NIIANEM 75 (328)
T ss_pred CcEEEECCCCccHHHHH-HHHHHHh
Confidence 35789999999999998 4555443
No 338
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.28 E-value=0.25 Score=50.13 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=25.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+
T Consensus 42 ~is~~i~~Ge~~~l~G~nGsGKSTLl-~~L~ 71 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLL-RCIN 71 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 34577889999999999999999998 6665
No 339
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.26 E-value=0.27 Score=51.84 Aligned_cols=34 Identities=35% Similarity=0.600 Sum_probs=28.5
Q ss_pred ceeeeee-eeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 194 IKAVDSL-VPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 194 IraID~l-~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+++||.+ +.+.+|+..+|+|.+|+|||+++. .|.
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~-aim 52 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAK-AIM 52 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHH-HHH
Confidence 5677654 789999999999999999999983 454
No 340
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=90.25 E-value=0.26 Score=49.43 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=25.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G 53 (257)
T PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFL-RCINF 53 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66653
No 341
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=90.24 E-value=0.24 Score=49.75 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=25.1
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.|-+|+..+|+|++|+|||||+ .+|+
T Consensus 32 isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 60 (260)
T PRK10744 32 INLDIAKNQVTAFIGPSGCGKSTLL-RTFN 60 (260)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 3467889999999999999999998 6665
No 342
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=90.24 E-value=0.24 Score=48.91 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=25.2
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.|-+|+..+|+|++|+|||||+ .+|+
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 52 (237)
T PRK11614 24 VSLHINQGEIVTLIGANGAGKTTLL-GTLC 52 (237)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHH-HHHc
Confidence 3477889999999999999999998 6665
No 343
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=90.23 E-value=0.24 Score=51.18 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=25.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|++.+|+|++|+|||||+ .+|..
T Consensus 23 vsl~i~~Ge~~~l~G~NGaGKSTLl-~~l~G 52 (303)
T TIGR01288 23 LSFTIARGECFGLLGPNGAGKSTIA-RMLLG 52 (303)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66653
No 344
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=90.20 E-value=0.31 Score=51.71 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=28.6
Q ss_pred eeeeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 196 AVDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 196 aID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+|.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 14 ~~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~iaG 46 (352)
T PRK11144 14 CLTVNLTLPAQGITAIFGRSGAGKTSLI-NAISG 46 (352)
T ss_pred EEEEEEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3477888999999999999999999998 66664
No 345
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.20 E-value=0.29 Score=50.55 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=29.3
Q ss_pred ceeee-eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 194 IKAVD-SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 194 IraID-~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
++++| .=+.|-+|...+++|.+|+||||++ .+|+
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlg-r~i~ 60 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLG-RLIL 60 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHH-HHHH
Confidence 46766 6689999999999999999999998 5555
No 346
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.19 E-value=0.25 Score=50.79 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=26.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.|.+|++.+|+|++|+|||||+ ..|+
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl-~~l~ 53 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLL-QHLN 53 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHH-HHHh
Confidence 55678889999999999999999998 5555
No 347
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=90.13 E-value=0.27 Score=48.02 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=26.0
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|.|++|+|||||+ ..|..
T Consensus 23 ~vs~~i~~G~~~~I~G~nGsGKStLl-~~l~G 53 (220)
T TIGR02982 23 DINLEINPGEIVILTGPSGSGKTTLL-TLIGG 53 (220)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 33467889999999999999999998 66653
No 348
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=90.08 E-value=0.25 Score=47.67 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=25.8
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|++.+|+|++|+|||||+ .+|..
T Consensus 26 ~isl~i~~G~~~~i~G~nGsGKSTLl-~~l~G 56 (207)
T cd03369 26 NVSFKVKAGEKIGIVGRTGAGKSTLI-LALFR 56 (207)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 33467889999999999999999998 66653
No 349
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=90.00 E-value=0.26 Score=50.17 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=27.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.|.+|++.+|+|++|+|||||+ .+|+..
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLl-k~L~Gl 73 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLS-NIIGGS 73 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 45667889999999999999999998 666643
No 350
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.00 E-value=0.27 Score=50.43 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=26.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|-+|+..+|+|++|+|||||+ .+|+.
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~L~G 87 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFL-RAINR 87 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 44578899999999999999999998 67764
No 351
>PRK14527 adenylate kinase; Provisional
Probab=89.98 E-value=2.6 Score=40.38 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=20.3
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+|+.+.|+|++|+||||++ ..+++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a-~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQA-ERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHH
Confidence 6788999999999999998 45553
No 352
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=89.94 E-value=0.29 Score=47.59 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=26.5
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|+..+|+|++|+|||||+ ..|+
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 45 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLL-NLIA 45 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHH-HHHh
Confidence 56688999999999999999999998 6665
No 353
>PRK06526 transposase; Provisional
Probab=89.93 E-value=0.48 Score=48.31 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=21.4
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+++.+.+.|++|||||+|+ ..|.++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa-~al~~~a~ 123 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLA-IGLGIRAC 123 (254)
T ss_pred cCceEEEEeCCCCchHHHH-HHHHHHHH
Confidence 5678899999999999999 45555543
No 354
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=89.93 E-value=0.24 Score=48.56 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=25.8
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.-+.+-+|+..+|.|++|+|||||+ .+|..
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLl-k~l~G 55 (226)
T cd03234 26 VSLHVESGQVMAILGSSGSGKTTLL-DAISG 55 (226)
T ss_pred ceEEEcCCeEEEEECCCCCCHHHHH-HHHhC
Confidence 3567889999999999999999998 66664
No 355
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.93 E-value=0.27 Score=50.04 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=25.5
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|++.+|+|++|+|||||+ .+|+
T Consensus 38 ~vs~~i~~Ge~~~IiG~nGsGKSTLl-~~l~ 67 (274)
T PRK14265 38 DVHLKIPAKKIIAFIGPSGCGKSTLL-RCFN 67 (274)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 34467889999999999999999998 6665
No 356
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=89.91 E-value=0.3 Score=48.44 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=25.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
-+++-+||..+|+|..|+|||||+ .||+
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLa-kMla 60 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLA-KMLA 60 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHH-HHHh
Confidence 578999999999999999999998 6665
No 357
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=89.91 E-value=0.22 Score=48.93 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.8
Q ss_pred eccccceeeeeccCCCCchHhHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl-~~l~ 27 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLL-RAIL 27 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHH-HHHh
Confidence 4678999999999999999998 6555
No 358
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=89.88 E-value=0.27 Score=49.72 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=25.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~ 60 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLA-KMLA 60 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHH-HHHh
Confidence 44577889999999999999999998 6665
No 359
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=89.87 E-value=0.29 Score=49.48 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.0
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|-+|+..+|+|++|+|||||+ .+|..
T Consensus 37 ~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 67 (267)
T PRK14235 37 DVDLDIPEKTVTAFIGPSGCGKSTFL-RCLNR 67 (267)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 33467889999999999999999998 66664
No 360
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=89.86 E-value=0.26 Score=50.40 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=25.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.|.+|+..+|+|++|+|||||+ .+|+.
T Consensus 20 vsl~i~~Ge~~~l~G~nGsGKSTLl-~~laG 49 (272)
T PRK13547 20 LSLRIEPGRVTALLGRNGAGKSTLL-KALAG 49 (272)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66653
No 361
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=89.85 E-value=0.25 Score=49.84 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 59 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLA-RLLLG 59 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 44578889999999999999999998 66653
No 362
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=89.84 E-value=0.29 Score=47.64 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 22 ~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 51 (221)
T cd03244 22 NISFSIKPGEKVGIVGRTGSGKSSLL-LALF 51 (221)
T ss_pred ceEEEECCCCEEEEECCCCCCHHHHH-HHHH
Confidence 34477889999999999999999998 6665
No 363
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.84 E-value=0.28 Score=49.28 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=26.1
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 26 isl~i~~Ge~~~l~G~nGsGKSTLl-k~l~G 55 (259)
T PRK14260 26 ISMDIYRNKVTAIIGPSGCGKSTFI-KTLNR 55 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 3477889999999999999999998 77764
No 364
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=89.83 E-value=0.28 Score=51.08 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=25.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.|.+|+.++|+|++|+|||||+ ..|+
T Consensus 25 ~vsl~i~~Ge~v~iiG~nGsGKSTLl-~~L~ 54 (305)
T PRK13651 25 NVSVEINQGEFIAIIGQTGSGKTTFI-EHLN 54 (305)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHH-HHHh
Confidence 44578899999999999999999998 5555
No 365
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.83 E-value=0.28 Score=50.22 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=26.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|-+|+..+|+|++|+|||||+ ..|+.
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~L~G 55 (286)
T PRK13646 25 DVNTEFEQGKYYAIVGQTGSGKSTLI-QNINA 55 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 34567889999999999999999998 66664
No 366
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=89.81 E-value=0.26 Score=51.91 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=25.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.|-+|+..+|+|++|+|||||+ .+|+.
T Consensus 36 sl~i~~Ge~~~ivG~sGsGKSTL~-~~l~G 64 (330)
T PRK09473 36 NFSLRAGETLGIVGESGSGKSQTA-FALMG 64 (330)
T ss_pred EEEEcCCCEEEEECCCCchHHHHH-HHHHc
Confidence 478889999999999999999998 66653
No 367
>KOG0744|consensus
Probab=89.80 E-value=0.38 Score=51.21 Aligned_cols=70 Identities=21% Similarity=0.365 Sum_probs=46.0
Q ss_pred eeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCc---------cccccccCcchhhhhhhhhhHHHHhhhccc
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM---------GEFFRDNGKHALIIYDDLSKQAVAYRQDEK 279 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~---------~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~ 279 (539)
+++-||+|||||+|+ ..++ |+-. +...-+|.-+-| ...|-+.||-+-.+++++..-+..
T Consensus 180 iLlhGPPGTGKTSLC-KaLa-QkLS----IR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d------ 247 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLC-KALA-QKLS----IRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED------ 247 (423)
T ss_pred EEEeCCCCCChhHHH-HHHH-Hhhe----eeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC------
Confidence 478899999999998 5554 5532 334445544433 335677888887888777544443
Q ss_pred CceEEEEEeecc
Q psy13776 280 KKLYCIYVAIGQ 291 (539)
Q Consensus 280 ~~~~~Vy~~IGe 291 (539)
.-..|+++|.|
T Consensus 248 -~~~lVfvLIDE 258 (423)
T KOG0744|consen 248 -RGNLVFVLIDE 258 (423)
T ss_pred -CCcEEEEEeHH
Confidence 34678889976
No 368
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.79 E-value=0.27 Score=47.57 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=23.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+-+| +.+|+|++|+|||||+ .+|+
T Consensus 19 vs~~i~~g-~~~i~G~nGsGKSTLl-~~l~ 46 (211)
T cd03264 19 VSLTLGPG-MYGLLGPNGAGKTTLM-RILA 46 (211)
T ss_pred eeEEEcCC-cEEEECCCCCCHHHHH-HHHh
Confidence 34667789 9999999999999998 6665
No 369
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.78 E-value=0.22 Score=50.58 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.7
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.+|++.+|+|++|+|||||+ .+|..
T Consensus 22 ~i~~Ge~~~IvG~nGsGKSTLl-k~l~G 48 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTAL-KILAG 48 (255)
T ss_pred CCCCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3889999999999999999998 66653
No 370
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.72 E-value=0.29 Score=48.80 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=25.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|-+|+..+|+|++|+|||||+ ..|+.
T Consensus 22 ~~s~~i~~G~~~~i~G~nGsGKSTLl-~~l~G 52 (251)
T PRK14249 22 NINMDFPERQITAIIGPSGCGKSTLL-RALNR 52 (251)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 33467889999999999999999998 66653
No 371
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=89.69 E-value=0.29 Score=50.47 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=26.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|++.+|+|++|+|||||+ ..|+.
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl-~~I~G 85 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLL-MLILG 85 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 44567889999999999999999998 66664
No 372
>PRK14974 cell division protein FtsY; Provisional
Probab=89.69 E-value=2 Score=45.74 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=19.7
Q ss_pred cccceeeeeccCCCCchHhHHHHHHH
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+++..+++.|++|+||||++ ..++.
T Consensus 138 ~~~~vi~~~G~~GvGKTTti-akLA~ 162 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTI-AKLAY 162 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHH-HHHHH
Confidence 45678999999999999986 44443
No 373
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.64 E-value=0.3 Score=50.64 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=26.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|.+|+..+|+|++|+|||||+ .+|+.
T Consensus 63 ~is~~i~~Ge~~~IvG~nGsGKSTLl-~~L~G 93 (305)
T PRK14264 63 GVSMDIPEKSVTALIGPSGCGKSTFL-RCLNR 93 (305)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 34577899999999999999999998 66663
No 374
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.64 E-value=0.29 Score=46.95 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.5
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
=+.+-+|+..+|+|++|+|||||+ .+|.
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~ 54 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLL-DVLA 54 (192)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHH-HHHh
Confidence 357889999999999999999998 6665
No 375
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.62 E-value=0.29 Score=48.31 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=25.7
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
=+.+.+|++.+|.|++|+|||||+ .+|...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~g~ 49 (232)
T cd03300 20 SLDIKEGEFFTLLGPSGCGKTTLL-RLIAGF 49 (232)
T ss_pred eEEECCCCEEEEECCCCCCHHHHH-HHHhcC
Confidence 467889999999999999999998 666643
No 376
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=89.60 E-value=3.3 Score=38.88 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++|+|++|+|||||. ..+.++
T Consensus 20 ~i~ivG~~~~GKStli-n~l~~~ 41 (179)
T TIGR03598 20 EIAFAGRSNVGKSSLI-NALTNR 41 (179)
T ss_pred EEEEEcCCCCCHHHHH-HHHhCC
Confidence 6689999999999997 667654
No 377
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=89.60 E-value=0.28 Score=52.21 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=26.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLL-r~iaG 52 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLL-RMVAG 52 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHH-HHHHC
Confidence 35578899999999999999999998 77764
No 378
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=89.59 E-value=0.29 Score=52.05 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=26.2
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLL-r~IaG 54 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVL-RLVAG 54 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHH-HHHHC
Confidence 4577889999999999999999998 77764
No 379
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=89.59 E-value=2.7 Score=37.46 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=15.7
Q ss_pred eeeeccCCCCchHhHHHHHH
Q psy13776 209 ELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~ 228 (539)
+.+.|.+|+||||++ ..+.
T Consensus 2 ii~~G~pgsGKSt~a-~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA-KRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHH-HHHH
Confidence 468999999999998 5554
No 380
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.55 E-value=0.33 Score=45.70 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=26.1
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+..
T Consensus 21 i~~~i~~G~~~~l~G~nGsGKstLl-~~i~G~ 51 (171)
T cd03228 21 VSLTIKPGEKVAIVGPSGSGKSTLL-KLLLRL 51 (171)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHHcC
Confidence 3467889999999999999999998 666643
No 381
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.54 E-value=0.31 Score=49.07 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=26.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|++.+|+|++|+|||||+ .+|..
T Consensus 34 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 64 (265)
T PRK14252 34 NINMMVHEKQVTALIGPSGCGKSTFL-RCFNR 64 (265)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHH-HHHhc
Confidence 44567889999999999999999998 66653
No 382
>CHL00176 ftsH cell division protein; Validated
Probab=89.50 E-value=0.85 Score=52.48 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.6
Q ss_pred eeeeccCCCCchHhHHHHHHHhhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+++.|++|||||+++ ..+++...
T Consensus 219 VLL~GPpGTGKT~LA-ralA~e~~ 241 (638)
T CHL00176 219 VLLVGPPGTGKTLLA-KAIAGEAE 241 (638)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhC
Confidence 899999999999999 77776543
No 383
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=89.49 E-value=0.3 Score=51.91 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.|.+|+..+|+|++|+|||||+ .+|+
T Consensus 23 ~vsl~i~~Gei~gIiG~sGaGKSTLl-r~I~ 52 (343)
T TIGR02314 23 NVSLHVPAGQIYGVIGASGAGKSTLI-RCVN 52 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 44577889999999999999999998 6555
No 384
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.49 E-value=0.31 Score=49.59 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=26.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|-+|+..+|+|++|+|||||+ .+|+.
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~i~G 50 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLF-LHFNG 50 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 34478889999999999999999998 66653
No 385
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.49 E-value=0.31 Score=49.99 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=25.5
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.|-+|++.+|+|++|+|||||+ .+|..
T Consensus 58 is~~i~~Ge~~~I~G~nGsGKSTLl-~~l~G 87 (285)
T PRK14254 58 VSMDIPENQVTAMIGPSGCGKSTFL-RCINR 87 (285)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 3467889999999999999999998 66653
No 386
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.49 E-value=0.31 Score=49.71 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=27.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.|.+|+..+|+|++|+|||||+ .+|+..
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl 56 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTV-RLIDGL 56 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcC
Confidence 44578899999999999999999998 666643
No 387
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=89.45 E-value=0.28 Score=45.16 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=24.1
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.+-+|+..+|+|++|+|||||+ .+|..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl-~~l~G 48 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLL-KLIAG 48 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHH-HHHcC
Confidence 46779999999999999999998 66653
No 388
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.41 E-value=0.32 Score=49.94 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=26.8
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.|-+|+..+|+|++|+|||||+ .+|+..
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGaGKSTLl-~~l~Gl 56 (287)
T PRK13637 25 NVNIEIEDGEFVGLIGHTGSGKSTLI-QHLNGL 56 (287)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcC
Confidence 33478889999999999999999998 677643
No 389
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=89.37 E-value=0.4 Score=50.17 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=19.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
.+++|||+|.|||||| ..|+|...
T Consensus 54 HvLl~GPPGlGKTTLA-~IIA~Emg 77 (332)
T COG2255 54 HVLLFGPPGLGKTTLA-HIIANELG 77 (332)
T ss_pred eEEeeCCCCCcHHHHH-HHHHHHhc
Confidence 4679999999999999 56665543
No 390
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.37 E-value=0.32 Score=49.48 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=25.5
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.|-+|+..+|+|++|+|||||+ .+|+.
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 53 (274)
T PRK13647 25 SLSIPEGSKTALLGPNGAGKSTLL-LHLNG 53 (274)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHH-HHHhc
Confidence 368889999999999999999998 66664
No 391
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.36 E-value=0.32 Score=49.69 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=26.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+..
T Consensus 25 ~v~l~i~~Ge~~~I~G~nGaGKSTLl-~~l~G~ 56 (282)
T PRK13640 25 DISFSIPRGSWTALIGHNGSGKSTIS-KLINGL 56 (282)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHH-HHHhcc
Confidence 33467889999999999999999998 667643
No 392
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.33 E-value=0.33 Score=49.05 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=25.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|+..+|+|++|+|||||+ ..|.
T Consensus 26 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 55 (261)
T PRK14263 26 DSHVPIRKNEITGFIGPSGCGKSTVL-RSLN 55 (261)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHH
Confidence 33567889999999999999999998 5554
No 393
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=89.33 E-value=0.32 Score=48.66 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=24.4
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
=+.+.+|+..+|+|++|+|||||+ ..|.
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~ 49 (255)
T PRK11231 22 SLSLPTGKITALIGPNGCGKSTLL-KCFA 49 (255)
T ss_pred eeEEcCCcEEEEECCCCCCHHHHH-HHHh
Confidence 367889999999999999999998 5555
No 394
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.32 E-value=0.31 Score=49.15 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|++.+|+|++|+|||||+ .+|..
T Consensus 28 ~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~iaG 58 (257)
T PRK14246 28 DITIKIPNNSIFGIMGPSGSGKSTLL-KVLNR 58 (257)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 34477889999999999999999998 66663
No 395
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=89.28 E-value=0.31 Score=51.15 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=26.1
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.|.+|+..+|+|++|+|||||+ .+|+.
T Consensus 26 vsl~i~~Ge~~~lvG~sGsGKSTL~-~~l~G 55 (326)
T PRK11022 26 ISYSVKQGEVVGIVGESGSGKSVSS-LAIMG 55 (326)
T ss_pred eEEEECCCCEEEEECCCCChHHHHH-HHHHc
Confidence 3488999999999999999999998 56654
No 396
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=89.25 E-value=0.33 Score=51.68 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=26.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-.|+..+|+|++|+|||||+ .+|+.
T Consensus 22 ~vs~~i~~Ge~~~l~GpsGsGKSTLL-r~iaG 52 (353)
T TIGR03265 22 DISLSVKKGEFVCLLGPSGCGKTTLL-RIIAG 52 (353)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHHC
Confidence 35577889999999999999999998 77764
No 397
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.20 E-value=0.34 Score=49.54 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=26.4
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.=+.|-+|+..+|+|++|+|||||+ .+|+..
T Consensus 26 vsl~i~~Ge~~~i~G~nGaGKSTLl-~~i~G~ 56 (279)
T PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLA-KLLNGL 56 (279)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHH-HHHhcC
Confidence 3478889999999999999999998 777643
No 398
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.19 E-value=0.32 Score=49.29 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=25.7
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.|-+|+..+|+|++|+|||||+ .+|+.
T Consensus 32 is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 61 (269)
T PRK14259 32 VFCDIPRGKVTALIGPSGCGKSTVL-RSLNR 61 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 3478889999999999999999998 66653
No 399
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=89.18 E-value=0.39 Score=39.08 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=17.8
Q ss_pred eeeeeccCCCCchHhHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~ 228 (539)
-.+|.|+.|+|||||+ |+|.
T Consensus 25 ~tli~G~nGsGKSTll-DAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLL-DAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHH-HHHH
Confidence 5789999999999997 8776
No 400
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.18 E-value=0.35 Score=47.85 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=25.5
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.|-+|++.+|+|++|+|||||+ ..|..
T Consensus 18 is~~i~~Ge~~~i~G~nG~GKStLl-~~l~G 47 (235)
T cd03299 18 VSLEVERGDYFVILGPTGSGKSVLL-ETIAG 47 (235)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 3477889999999999999999998 66653
No 401
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=89.18 E-value=0.35 Score=49.08 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 43 ~vs~~i~~Ge~~~I~G~nGsGKSTLl-~~laG 73 (272)
T PRK14236 43 DISMRIPKNRVTAFIGPSGCGKSTLL-RCFNR 73 (272)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 33467889999999999999999998 66653
No 402
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=89.16 E-value=0.34 Score=50.05 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=25.8
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|+.|+|||||+ .+|+.
T Consensus 21 is~~i~~Gei~~l~G~NGaGKTTLl-~~l~G 50 (301)
T TIGR03522 21 VSFEAQKGRIVGFLGPNGAGKSTTM-KIITG 50 (301)
T ss_pred eEEEEeCCeEEEEECCCCCCHHHHH-HHHhC
Confidence 3477889999999999999999998 66764
No 403
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.02 E-value=0.29 Score=49.31 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.0
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLl-k~L~G 47 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFI-KMLAG 47 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3568999999999999999998 66653
No 404
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.00 E-value=0.36 Score=49.14 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=26.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|-+|+..+|+|++|+|||||+ ..|+.
T Consensus 22 ~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~G 52 (277)
T PRK13652 22 NINFIAPRNSRIAVIGPNGAGKSTLF-RHFNG 52 (277)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 34478889999999999999999998 66664
No 405
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=88.99 E-value=0.3 Score=48.35 Aligned_cols=29 Identities=24% Similarity=0.459 Sum_probs=24.9
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.|-+|++.+|+|++|+|||||+ .+|+.
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 49 (248)
T PRK09580 21 NLEVRPGEVHAIMGPNGSGKSTLS-ATLAG 49 (248)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHH-HHHcC
Confidence 366789999999999999999998 66653
No 406
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.97 E-value=0.36 Score=49.14 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=27.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.|-+|+..+|+|++|+|||||+ .+|+..
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl 51 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLA-LHLNGL 51 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcC
Confidence 44578889999999999999999998 777643
No 407
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=88.87 E-value=0.39 Score=48.27 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=25.1
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 69 (257)
T cd03288 41 KAYIKPGQKVGICGRTGSGKSSLS-LAFFR 69 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH-HHHHc
Confidence 467889999999999999999998 66653
No 408
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=88.83 E-value=0.35 Score=48.43 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=25.0
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+-+|+..+|+|++|+|||||+ ..|+.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G 49 (256)
T TIGR03873 21 DVTAPPGSLTGLLGPNGSGKSTLL-RLLAG 49 (256)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHH-HHHcC
Confidence 367789999999999999999998 66654
No 409
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=88.81 E-value=0.33 Score=41.88 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=19.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|+.|+|++|+|||||. ..+++..
T Consensus 1 kI~V~G~~g~GKTsLi-~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLI-RRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHSS
T ss_pred CEEEECcCCCCHHHHH-HHHhcCC
Confidence 7899999999999997 6666543
No 410
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=88.80 E-value=0.28 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.1
Q ss_pred eeeccccceeeeeccCCCCchHhH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALA 223 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa 223 (539)
=+.+-+|+.+.|+|++|+|||||+
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHH
Confidence 467889999999999999999997
No 411
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.80 E-value=0.37 Score=48.55 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=25.8
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|..
T Consensus 26 is~~i~~Ge~~~I~G~nGsGKSTLl-~~l~G 55 (261)
T PRK14258 26 VSMEIYQSKVTAIIGPSGCGKSTFL-KCLNR 55 (261)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHH-HHHhc
Confidence 3467889999999999999999998 66663
No 412
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=88.77 E-value=3.7 Score=43.27 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=20.1
Q ss_pred cccceeeeeccCCCCchHhHHHHHH
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.+|+.++++|++|+||||++ ..++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~-~kLA 135 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTI-GKLA 135 (318)
T ss_pred CCCeEEEEECCCCCcHHHHH-HHHH
Confidence 56889999999999999998 3444
No 413
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=88.70 E-value=0.49 Score=47.52 Aligned_cols=43 Identities=28% Similarity=0.460 Sum_probs=32.7
Q ss_pred ccccceeeeeee-eccccceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 190 LSAGIKAVDSLV-PIGRGQRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 190 l~TGIraID~l~-pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+.||++.+|-++ .+-+|+=..|-|.+|.|||++++....|...
T Consensus 2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~ 45 (259)
T PF03796_consen 2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAAL 45 (259)
T ss_dssp B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHH
Confidence 469999999887 5677888889999999999999766665443
No 414
>PRK12608 transcription termination factor Rho; Provisional
Probab=88.67 E-value=0.26 Score=53.22 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=39.5
Q ss_pred ceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCC
Q psy13776 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIR 496 (539)
Q Consensus 430 DGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~ 496 (539)
+.-||+|..+-.+- .++.||.|+.|++. |+|..+||||+|++|..
T Consensus 44 ~~d~yv~~~~i~~~-------------------~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p 88 (380)
T PRK12608 44 PDDVFVPPALIRRF-------------------NLRTGDVVEGVARP---RERYRVLVRVDSVNGTD 88 (380)
T ss_pred CCCeeeCHHHHHHh-------------------CCCCCCEEEeccCC---CCChhheEEEeccCCcC
Confidence 34678888888776 58999999999999 99999999999999944
No 415
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.52 E-value=0.4 Score=48.84 Aligned_cols=29 Identities=31% Similarity=0.404 Sum_probs=25.1
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+-+|+..+|.|++|+|||||+ ..|+.
T Consensus 27 ~l~i~~Ge~~~I~G~nGsGKSTLl-~~l~G 55 (277)
T PRK13642 27 SFSITKGEWVSIIGQNGSGKSTTA-RLIDG 55 (277)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHH-HHHhc
Confidence 367889999999999999999998 66663
No 416
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.51 E-value=1.3 Score=47.84 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=19.7
Q ss_pred eeeeccCCCCchHhHHHHHHHhhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+++.|++|||||++| ..++++..
T Consensus 168 vLL~GppGtGKT~lA-kaia~~~~ 190 (389)
T PRK03992 168 VLLYGPPGTGKTLLA-KAVAHETN 190 (389)
T ss_pred eEEECCCCCChHHHH-HHHHHHhC
Confidence 789999999999998 77777654
No 417
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.51 E-value=0.4 Score=50.28 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=25.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.|.+|+..+|+|++|+|||||+ ..|..
T Consensus 46 sl~i~~Ge~~~I~G~nGsGKSTLl-~~L~G 74 (320)
T PRK13631 46 SYTFEKNKIYFIIGNSGSGKSTLV-THFNG 74 (320)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 378889999999999999999998 66654
No 418
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.50 E-value=0.4 Score=49.28 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=25.2
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.|-+|+..+|+|++|+|||||+ .+|+.
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 55 (290)
T PRK13634 27 NVSIPSGSYVAIIGHTGSGKSTLL-QHLNG 55 (290)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHH-HHHhc
Confidence 478889999999999999999998 66653
No 419
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=88.47 E-value=2.5 Score=41.86 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=19.3
Q ss_pred eeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
-+-|+|++|+|||.|+ ..|+|...
T Consensus 36 ~l~l~G~~G~GKTHLL-~Ai~~~~~ 59 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLL-QAIANEAQ 59 (219)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHHH
T ss_pred ceEEECCCCCCHHHHH-HHHHHHHH
Confidence 3569999999999997 67776643
No 420
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.46 E-value=2.5 Score=46.13 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=21.4
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.+|..++++|+.|+||||++ ..++.
T Consensus 202 ~~~~~~ii~lvGptGvGKTTt~-akLA~ 228 (407)
T PRK12726 202 DLSNHRIISLIGQTGVGKTTTL-VKLGW 228 (407)
T ss_pred eecCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 3567888899999999999998 34443
No 421
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.44 E-value=0.42 Score=46.42 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=26.5
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+ +..+|+|++|+|||||+ .+|..
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl-~~l~G 45 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLL-RCIAG 45 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHH-HHHhC
Confidence 77889999 99999999999999998 66653
No 422
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=88.36 E-value=0.4 Score=51.58 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=27.0
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 32 ~vsl~i~~Ge~~~LlGpsGsGKSTLL-r~IaG 62 (375)
T PRK09452 32 NLDLTINNGEFLTLLGPSGCGKTTVL-RLIAG 62 (375)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHH-HHHhC
Confidence 34578899999999999999999998 77774
No 423
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=88.35 E-value=0.51 Score=50.03 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=27.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl-~~iaG 45 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLI-RLIAG 45 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 66788999999999999999999998 66663
No 424
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=88.30 E-value=0.4 Score=51.25 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLL-~~iaG 51 (369)
T PRK11000 21 DINLDIHEGEFVVFVGPSGCGKSTLL-RMIAG 51 (369)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHH-HHHhC
Confidence 34467889999999999999999998 66663
No 425
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.24 E-value=3.1 Score=45.19 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=62.9
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHH-----HHhhhcc
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA-----VAYRQDE 278 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a-----~~~~~~~ 278 (539)
.+++.+.++|+.|+||||.+ ..+++...... ...++.+.+|.-|-++.+ ..|...-
T Consensus 172 ~~~~vi~lvGptGvGKTTT~-aKLA~~~~~~~------------------~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l 232 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTI-AKLAAIYGINS------------------DDKSLNIKIITIDNYRIGAKKQIQTYGDIM 232 (388)
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHHHHHhhh------------------ccCCCeEEEEeccCccHHHHHHHHHHhhcC
Confidence 45678899999999999998 44554322100 001222222322222211 1111101
Q ss_pred cCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCC--CcEEEEecChhH
Q psy13776 279 KKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNG--KHALIIYDDLSK 356 (539)
Q Consensus 279 ~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~G--kdVLli~DslTr 356 (539)
++- +.+..-..++.+.++.+ .++-+|++-|+..++-. .+.-..+.+++...+ .++++++|-.++
T Consensus 233 --gvp---v~~~~~~~~l~~~L~~~-----~~~DlVLIDTaGr~~~~----~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 233 --GIP---VKAIESFKDLKEEITQS-----KDFDLVLVDTIGKSPKD----FMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred --Ccc---eEeeCcHHHHHHHHHHh-----CCCCEEEEcCCCCCccC----HHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 111 12233334444444443 24668889888777632 222223444444433 269999999888
Q ss_pred HHHHh
Q psy13776 357 QAVAY 361 (539)
Q Consensus 357 ~A~A~ 361 (539)
.....
T Consensus 299 ~~~~~ 303 (388)
T PRK12723 299 TSDVK 303 (388)
T ss_pred HHHHH
Confidence 55544
No 426
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=88.20 E-value=1.2 Score=45.54 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=24.1
Q ss_pred cccccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 187 YNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 187 ~epl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
++-+..|..+-++ ++.|++|||||++. .++++.-
T Consensus 43 t~~Fl~G~pannv----------LL~G~rGtGKSSlV-kall~~y 76 (249)
T PF05673_consen 43 TEQFLQGLPANNV----------LLWGARGTGKSSLV-KALLNEY 76 (249)
T ss_pred HHHHHcCCCCcce----------EEecCCCCCHHHHH-HHHHHHH
Confidence 5556666555544 57899999999997 5666544
No 427
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=88.15 E-value=0.43 Score=50.46 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=25.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 23 ~vsl~i~~Gei~~iiG~nGsGKSTLl-k~L~G 53 (343)
T PRK11153 23 NVSLHIPAGEIFGVIGASGAGKSTLI-RCINL 53 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHH-HHHhC
Confidence 34477889999999999999999998 66653
No 428
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.15 E-value=0.37 Score=53.27 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=26.0
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.|-+||+++|.|++|+|||||+ +.+.
T Consensus 353 ~isl~i~~G~~vaIvG~SGsGKSTLl-~lL~ 382 (529)
T TIGR02868 353 GVSLDLPPGERVAILGPSGSGKSTLL-MLLT 382 (529)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 44578889999999999999999998 6665
No 429
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=88.14 E-value=0.42 Score=50.60 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=25.9
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|+..+|+|+.|+|||||+ .+|+.
T Consensus 60 is~~i~~Gei~gLlGpNGaGKSTLl-~~L~G 89 (340)
T PRK13536 60 LSFTVASGECFGLLGPNGAGKSTIA-RMILG 89 (340)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHHc
Confidence 3468899999999999999999997 66764
No 430
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=88.02 E-value=0.39 Score=48.04 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=25.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+
T Consensus 14 ~vsl~i~~Gei~~l~G~nGsGKSTLl-~~l~ 43 (248)
T PRK03695 14 PLSAEVRAGEILHLVGPNGAGKSTLL-ARMA 43 (248)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHH-HHHc
Confidence 33467889999999999999999998 5554
No 431
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=87.97 E-value=0.44 Score=48.59 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=26.5
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.|-+|+..+|+|++|+|||||+ .+|...
T Consensus 28 ~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl 59 (280)
T PRK13633 28 DVNLEVKKGEFLVILGRNGSGKSTIA-KHMNAL 59 (280)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 34567889999999999999999998 666633
No 432
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=87.88 E-value=0.41 Score=46.32 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+.|+|++|+||||+| ..|.+.
T Consensus 2 riiilG~pGaGK~T~A-~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLA-KKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHH-HHHHHH
Confidence 7899999999999999 666654
No 433
>PRK09183 transposase/IS protein; Provisional
Probab=87.82 E-value=0.31 Score=49.68 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=23.5
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+.+|+.+.|+|++|+|||+|+ ..|.++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa-~al~~~a 126 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA-IALGYEA 126 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH-HHHHHHH
Confidence 778999999999999999999 4555543
No 434
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.69 E-value=0.48 Score=49.94 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=26.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.|-+|++.+|+|++|+|||||+ .+|+..
T Consensus 100 ~is~~I~~Ge~v~IvG~~GsGKSTLl-~~L~g~ 131 (329)
T PRK14257 100 DLNLDIKRNKVTAFIGPSGCGKSTFL-RNLNQL 131 (329)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcc
Confidence 34567889999999999999999998 666643
No 435
>PRK06921 hypothetical protein; Provisional
Probab=87.65 E-value=1.4 Score=45.26 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=20.9
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.+.-+.++|++|+|||+|+ ..|+++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l 141 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANEL 141 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 4667899999999999998 5666543
No 436
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.64 E-value=0.49 Score=48.41 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=26.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.|-+|+..+|+|++|+|||||+ ..|...
T Consensus 24 ~vs~~i~~Ge~~~i~G~nGaGKSTLl-~~i~Gl 55 (283)
T PRK13636 24 GININIKKGEVTAILGGNGAGKSTLF-QNLNGI 55 (283)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcC
Confidence 34577889999999999999999998 666643
No 437
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=87.63 E-value=0.75 Score=49.83 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=37.4
Q ss_pred cccccccceeeeeeee-ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 187 YNLLSAGIKAVDSLVP-IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 187 ~epl~TGIraID~l~p-IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
...+.||+..+|-++- +-+|+=+.|-|.+|+|||++++..+.+..
T Consensus 175 ~~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a 220 (434)
T TIGR00665 175 ITGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAA 220 (434)
T ss_pred CCcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHH
Confidence 3457899999999874 77899999999999999999977666543
No 438
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=87.63 E-value=0.43 Score=46.41 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=20.7
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+|..++|.|++|+|||||+ ..|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~-~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVA-RKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHH-HHHHHH
Confidence 5788999999999999998 556543
No 439
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.60 E-value=0.89 Score=45.42 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=19.8
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+..+.|+|++|+|||+|+ ..++++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl-~a~~~~~ 69 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL-HAACAEL 69 (235)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 356789999999999998 4566554
No 440
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.57 E-value=2.1 Score=47.12 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=19.1
Q ss_pred cccceeeeeccCCCCchHhHHHHHH
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.++..++++|++|+||||++. .++
T Consensus 221 ~~~~vi~lvGptGvGKTTtaa-KLA 244 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIA-KLA 244 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHH-HHH
Confidence 355678999999999999984 444
No 441
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=87.55 E-value=0.46 Score=48.49 Aligned_cols=30 Identities=37% Similarity=0.465 Sum_probs=25.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|.|+||+|..|+|||||+ ..|.
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLl-klia 74 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLL-KLIA 74 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHH-HHHh
Confidence 55688999999999999999999997 4444
No 442
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=87.54 E-value=0.46 Score=44.67 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=19.8
Q ss_pred cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+.+.|.|++|+|||||+ ..+++.
T Consensus 1 ~~~~~i~G~sGsGKttl~-~~l~~~ 24 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLL-DYARAR 24 (179)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHH
Confidence 567899999999999998 666554
No 443
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=87.49 E-value=1.3 Score=49.00 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=19.4
Q ss_pred eeeeccCCCCchHhHHHHHHHhhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+++.|++|||||+++ ..|++...
T Consensus 91 iLL~GppGtGKT~la-~alA~~~~ 113 (495)
T TIGR01241 91 VLLVGPPGTGKTLLA-KAVAGEAG 113 (495)
T ss_pred EEEECCCCCCHHHHH-HHHHHHcC
Confidence 789999999999998 67776543
No 444
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=87.43 E-value=1.9 Score=46.96 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=21.1
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+.-+++.|++|||||+|+ ..+++...
T Consensus 179 pkgvLL~GppGTGKT~LA-kalA~~l~ 204 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA-KAVAHHTT 204 (398)
T ss_pred CceEEEECCCCCCHHHHH-HHHHHhcC
Confidence 345899999999999998 77776643
No 445
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=87.38 E-value=0.48 Score=49.28 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=25.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.|-+|+..+|+|+.|+|||||+ .+|+.
T Consensus 27 sl~i~~Gei~gllGpNGaGKSTLl-~~l~G 55 (306)
T PRK13537 27 SFHVQRGECFGLLGPNGAGKTTTL-RMLLG 55 (306)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHH-HHHhc
Confidence 467889999999999999999997 66664
No 446
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=87.35 E-value=0.47 Score=52.56 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=26.8
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.+-+|++.+|+|++|+|||||+ .+|+..
T Consensus 18 ~is~~i~~Ge~~~iiG~nGsGKSTLl-~~l~Gl 49 (520)
T TIGR03269 18 NISFTIEEGEVLGILGRSGAGKSVLM-HVLRGM 49 (520)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHH-HHHhhc
Confidence 34568889999999999999999998 666643
No 447
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=87.35 E-value=0.37 Score=52.37 Aligned_cols=56 Identities=32% Similarity=0.516 Sum_probs=48.2
Q ss_pred hccCcCCCCCCCcccEEecccccccccce-eeeccceeecccccccchhhccccCCC
Q psy13776 441 YKGMALNLEPDNVGVVVFGNDRLIKEGDI-VKRTGAIVDVPVGEDLLGRVVDALGIR 496 (539)
Q Consensus 441 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~l~~v~~~lg~~ 496 (539)
.+|.++.++.+.+=+-||+.-+-+--.+. |+-||..++|||++.+|||+.|.+|..
T Consensus 42 r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~vs~dllGRifnG~G~P 98 (463)
T COG1156 42 RRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPVSEDLLGRIFNGSGKP 98 (463)
T ss_pred eeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEeecHHhhhhhhcCCCCc
Confidence 35666777778888889998888887777 999999999999999999999999954
No 448
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=87.32 E-value=0.48 Score=47.83 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=23.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALA 223 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa 223 (539)
|.=+.|-+|.-+.|.|++|+|||||+
T Consensus 23 ~v~l~i~~Ge~vaI~GpSGSGKSTLL 48 (226)
T COG1136 23 DVNLEIEAGEFVAIVGPSGSGKSTLL 48 (226)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHH
Confidence 45678999999999999999999998
No 449
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=87.29 E-value=0.47 Score=50.83 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=28.7
Q ss_pred cceeee-eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 193 GIKAVD-SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 193 GIraID-~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+..++| .=+.|-+|.-..+.||+||||||++ -+|+
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlL-R~IA 52 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLL-RMIA 52 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHH-HHHh
Confidence 345555 6678999999999999999999998 5565
No 450
>KOG0733|consensus
Probab=87.21 E-value=1.9 Score=49.38 Aligned_cols=163 Identities=21% Similarity=0.217 Sum_probs=81.1
Q ss_pred eeeeccCCCCchHhHHHHHHHhhhhccccccccccccCC-CccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEE
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGC-AMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYV 287 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~-~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~ 287 (539)
+++-||+|||||.|| .+|+++... +-+.-=|+-.-. ..|| .++. .++++.+|..+. .++||.
T Consensus 226 vLlHGPPGCGKT~lA-~AiAgel~v--Pf~~isApeivSGvSGE----SEkk----iRelF~~A~~~a------PcivFi 288 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLA-NAIAGELGV--PFLSISAPEIVSGVSGE----SEKK----IRELFDQAKSNA------PCIVFI 288 (802)
T ss_pred eeeeCCCCccHHHHH-HHHhhhcCC--ceEeecchhhhcccCcc----cHHH----HHHHHHHHhccC------CeEEEe
Confidence 468999999999999 889988653 111111111111 1222 2222 356666777532 244554
Q ss_pred ----eeccchhHH---------HHHHHHHhc---CCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEe
Q psy13776 288 ----AIGQKRSTV---------AQIVKRLTD---SGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIY 351 (539)
Q Consensus 288 ----~IGer~~ev---------~e~~~~l~~---~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~ 351 (539)
||+-++.+. ++++.-+.+ .+.-...|+|.+..+.|-.+ .-|+-.|=+| -+..-+=+
T Consensus 289 DeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl-----DpaLRRaGRF---drEI~l~v 360 (802)
T KOG0733|consen 289 DEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL-----DPALRRAGRF---DREICLGV 360 (802)
T ss_pred ecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc-----CHHHhccccc---cceeeecC
Confidence 788776553 333333322 11112346666666665432 1122222222 00111112
Q ss_pred cChhHHHHHhHHhhhccCCCCC------CCCCCCchhhchhHHHHhhhccc
Q psy13776 352 DDLSKQAVAYRQMSLLLRRPPG------REAYPGDVFYLHSRLLERSAKMS 396 (539)
Q Consensus 352 DslTr~A~A~Reisl~lgepP~------r~gyPg~vf~~~srLlERag~~~ 396 (539)
=|=+.-.+-++-|..-|+-.+. .+.-||+|-..+..|.-+||...
T Consensus 361 P~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vA 411 (802)
T KOG0733|consen 361 PSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVA 411 (802)
T ss_pred CchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHH
Confidence 2223333444444444433332 25678888899998888887654
No 451
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=87.13 E-value=0.53 Score=51.52 Aligned_cols=34 Identities=29% Similarity=0.690 Sum_probs=28.6
Q ss_pred ceeeeee-eeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 194 IKAVDSL-VPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 194 IraID~l-~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
++++|.+ +++-+||..||.|.+|+||||+.. +++
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~-all 334 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGL-ALL 334 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHH-HHH
Confidence 5777765 789999999999999999999984 444
No 452
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=87.08 E-value=0.49 Score=48.66 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=26.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=++|-+|.-.+|+|+.|+|||||+ ..|.+
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLL-k~l~g 50 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLL-KCLAG 50 (258)
T ss_pred cceEEecCCcEEEEECCCCCCHHHHH-HHHhc
Confidence 44678889999999999999999998 66653
No 453
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=86.98 E-value=0.46 Score=54.39 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=26.5
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|-+|++++|+|+.|+|||||+ .+|+.
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLL-kiL~G 49 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLL-ALLKN 49 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 44578899999999999999999998 66654
No 454
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.96 E-value=3.1 Score=47.18 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=22.9
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
-++.+|+.++|+|+.|+||||++ ..++.
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTta-akLAa 372 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTI-AKLAQ 372 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHH-HHHHH
Confidence 45678999999999999999998 44443
No 455
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=86.84 E-value=0.56 Score=48.19 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=25.0
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.|-+|++.+|+|++|+|||||+ .+|..
T Consensus 24 sl~I~~Ge~~~IvG~nGsGKSTLl-~~L~g 52 (275)
T cd03289 24 SFSISPGQRVGLLGRTGSGKSTLL-SAFLR 52 (275)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHH-HHHhh
Confidence 378899999999999999999998 55553
No 456
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=86.81 E-value=0.55 Score=50.37 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=25.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.|.+|+..+|+|++|+|||||+ .+|+
T Consensus 11 ~vs~~i~~Gei~~l~G~sGsGKSTLL-r~L~ 40 (363)
T TIGR01186 11 DADLAIAKGEIFVIMGLSGSGKSTTV-RMLN 40 (363)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHH-HHHh
Confidence 44578889999999999999999998 5555
No 457
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=86.79 E-value=0.46 Score=44.50 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.3
Q ss_pred cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+.+.|.|++|+|||||+ ..+++.
T Consensus 1 g~ii~l~G~~GsGKsTl~-~~L~~~ 24 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLV-KALLEE 24 (180)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHcc
Confidence 678899999999999998 666653
No 458
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=86.79 E-value=1.2 Score=43.90 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=17.5
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
|+.++|++|+|||+|+ ..+.+
T Consensus 2 KI~lvG~~gvGKTsLi-~~~~~ 22 (221)
T cd04148 2 RVVMLGSPGVGKSSLA-SQFTS 22 (221)
T ss_pred EEEEECCCCCcHHHHH-HHHhc
Confidence 6889999999999998 55543
No 459
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=86.77 E-value=0.5 Score=52.89 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.|=+||+.+|.|++|+|||||+ +.|...
T Consensus 361 ~i~l~i~~G~~~aIvG~sGsGKSTLl-~ll~gl 392 (582)
T PRK11176 361 NINFKIPAGKTVALVGRSGSGKSTIA-NLLTRF 392 (582)
T ss_pred CceEEeCCCCEEEEECCCCCCHHHHH-HHHHhc
Confidence 34556779999999999999999998 667643
No 460
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=86.74 E-value=0.54 Score=46.65 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.6
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
=+++-.||+..|+|++|+|||||+ +.|+
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLL-nLIA 46 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLL-NLIA 46 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHH-HHHH
Confidence 345668999999999999999997 6555
No 461
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=86.73 E-value=7.5 Score=37.20 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=34.4
Q ss_pred ChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHH-----HhHHhhhccCCCCC
Q psy13776 322 AAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV-----AYRQMSLLLRRPPG 373 (539)
Q Consensus 322 ~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~-----A~Reisl~lgepP~ 373 (539)
.+.+....+..+...|......|..=|+|+|.+.--.. .-.-+.++-.||+.
T Consensus 72 ~~~~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~ 128 (159)
T cd00561 72 NDEEDIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPED 128 (159)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCC
Confidence 35566677788888888887888888899999864311 11223455556665
No 462
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=86.64 E-value=0.51 Score=52.92 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|++.+|+|++|+|||||+ +.+.
T Consensus 368 ~i~l~i~~G~~vaIvG~SGsGKSTL~-~lL~ 397 (588)
T PRK11174 368 PLNFTLPAGQRIALVGPSGAGKTSLL-NALL 397 (588)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 33478889999999999999999998 5555
No 463
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=86.64 E-value=0.41 Score=44.47 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=15.8
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+.|.|+++||||||+ ..+..+
T Consensus 1 rI~i~G~~stGKTTL~-~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLI-EALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHH-HHHHHH
T ss_pred CEEEECCCCCCHHHHH-HHHHHc
Confidence 7899999999999998 556544
No 464
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=86.53 E-value=0.48 Score=54.08 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=26.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|-+|++++|+|++|+|||||+ .+|+.
T Consensus 21 ~is~~i~~Ge~v~LvG~NGsGKSTLL-riiaG 51 (635)
T PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLM-KILNG 51 (635)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHH-HHHcC
Confidence 44578889999999999999999998 66654
No 465
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=86.52 E-value=0.6 Score=50.22 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=26.0
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLL-r~IaG 67 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLL-RMLAG 67 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHH-HHHhC
Confidence 4477889999999999999999998 77763
No 466
>PLN03073 ABC transporter F family; Provisional
Probab=86.49 E-value=0.47 Score=55.22 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=26.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.|..|+|++|+|++|+|||||+ .+|+
T Consensus 195 ~isl~i~~Ge~~gLvG~NGsGKSTLL-r~l~ 224 (718)
T PLN03073 195 DASVTLAFGRHYGLVGRNGTGKTTFL-RYMA 224 (718)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHH-HHHc
Confidence 66789999999999999999999998 5555
No 467
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=86.45 E-value=0.6 Score=49.94 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=26.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|-+|+..+|+|++|+|||||+ .+|+.
T Consensus 23 ~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaG 53 (362)
T TIGR03258 23 DLSLEIEAGELLALIGKSGCGKTTLL-RAIAG 53 (362)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 34567889999999999999999998 77764
No 468
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=86.43 E-value=3.4 Score=45.56 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=16.6
Q ss_pred ceeeeeccCCCCchHhHHHHHH
Q psy13776 207 QRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~ 228 (539)
..++++|..|+||||++ ..++
T Consensus 101 ~vi~lvG~~GvGKTTta-aKLA 121 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTC-TKLA 121 (429)
T ss_pred eEEEEECCCCCCHHHHH-HHHH
Confidence 35689999999999998 4444
No 469
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=86.42 E-value=0.53 Score=52.32 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=26.0
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.|-+|++.+|+|++|+|||||+ ..|+.
T Consensus 20 vsl~i~~Ge~~~liG~NGsGKSTLl-~~l~G 49 (530)
T PRK15064 20 ISVKFGGGNRYGLIGANGCGKSTFM-KILGG 49 (530)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 4578899999999999999999998 66663
No 470
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=86.36 E-value=0.54 Score=52.75 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=26.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.+..|++.+|+|++|+|||||+ .+|+..
T Consensus 25 ~vs~~i~~Ge~~~iiG~NGsGKSTLl-k~i~G~ 56 (556)
T PRK11819 25 DISLSFFPGAKIGVLGLNGAGKSTLL-RIMAGV 56 (556)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 34478999999999999999999998 666643
No 471
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=86.32 E-value=0.59 Score=40.54 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=16.7
Q ss_pred eeeeccCCCCchHhHHHHHHHh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq 230 (539)
++|.|.+|+|||||+ ..+...
T Consensus 1 I~i~G~~GsGKtTia-~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA-KELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHH-HHHHHH
T ss_pred CEEECCCCCCHHHHH-HHHHHH
Confidence 579999999999998 445443
No 472
>PRK00300 gmk guanylate kinase; Provisional
Probab=86.31 E-value=0.58 Score=44.90 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=21.3
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+|+-+.|.|++|+|||||+ ..++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~-~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLV-KALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 6889999999999999998 566643
No 473
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=86.30 E-value=0.54 Score=47.49 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=21.4
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+-..+..+++.|++|||||++| ..++++
T Consensus 38 ~~~~~~~vll~GppGtGKTtlA-~~ia~~ 65 (261)
T TIGR02881 38 TSKQVLHMIFKGNPGTGKTTVA-RILGKL 65 (261)
T ss_pred CCCCcceEEEEcCCCCCHHHHH-HHHHHH
Confidence 3345567889999999999999 555544
No 474
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=86.30 E-value=0.56 Score=51.75 Aligned_cols=31 Identities=13% Similarity=0.369 Sum_probs=26.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 22 ~is~~i~~Ge~~~l~G~NGsGKSTLl-~~l~G 52 (501)
T PRK10762 22 GAALNVYPGRVMALVGENGAGKSTMM-KVLTG 52 (501)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHH-HHHhC
Confidence 34568889999999999999999998 66653
No 475
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=86.24 E-value=0.58 Score=52.04 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=26.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 27 ~isl~i~~Ge~~~iiG~nGsGKSTLl-~~i~G 57 (529)
T PRK15134 27 DVSLQIEAGETLALVGESGSGKSVTA-LSILR 57 (529)
T ss_pred ceEEEEeCCCEEEEECCCCCcHHHHH-HHHhc
Confidence 44577889999999999999999998 65653
No 476
>PRK05480 uridine/cytidine kinase; Provisional
Probab=86.12 E-value=0.61 Score=45.18 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=21.2
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.++..++|.|++|+|||||+ ..|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~-~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVA-STIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHH-HHHHHH
Confidence 46778899999999999998 556543
No 477
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=86.10 E-value=0.56 Score=51.50 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=25.2
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+
T Consensus 22 vsl~i~~Ge~~~liG~nGsGKSTLl-~~l~ 50 (490)
T PRK10938 22 PSLTLNAGDSWAFVGANGSGKSALA-RALA 50 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 3478899999999999999999998 5555
No 478
>PRK14531 adenylate kinase; Provisional
Probab=86.03 E-value=0.6 Score=44.53 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.2
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
||+.|+|++|+||||++ ..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~-~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQA-ARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHH-HHHHHH
Confidence 68999999999999998 555543
No 479
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=86.02 E-value=0.59 Score=51.44 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=25.8
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 20 isl~i~~Ge~~~liG~nGsGKSTLl-~~i~G 49 (500)
T TIGR02633 20 IDLEVRPGECVGLCGENGAGKSTLM-KILSG 49 (500)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 4578889999999999999999998 66653
No 480
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=85.99 E-value=0.59 Score=52.66 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=27.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|.=+.|-+|+|++|+|+.|+|||||+ .+|+.+.
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLl-k~l~g~~ 372 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLL-KLLAGEL 372 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHH-HHHhhhc
Confidence 45567889999999999999999998 7776554
No 481
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=85.90 E-value=0.34 Score=54.10 Aligned_cols=119 Identities=24% Similarity=0.415 Sum_probs=83.6
Q ss_pred eeeeeecccccee----------eeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhh
Q psy13776 197 VDSLVPIGRGQRE----------LIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDD 266 (539)
Q Consensus 197 ID~l~pIGrGQR~----------lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~ 266 (539)
.|..+-||+|.|- +=.=|++|||+-.--..++++..+-+-....-..|+|-+++|||+|.|.+++...|-
T Consensus 250 adiVVyigCGERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADS 329 (588)
T COG1155 250 GDIVIYVGCGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADS 329 (588)
T ss_pred CCEEEEEecCCccchHHHHHHhCccccCCCCCCcccceeeEeecCccchHHHhhhhhhhhhhHHHHHHhhhhhhHHhhch
Confidence 5788889999763 223379999963322222233322233333445689999999999999999999998
Q ss_pred hhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCc
Q psy13776 267 LSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKH 346 (539)
Q Consensus 267 ~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~Gkd 346 (539)
-|++|-+.| |+-.+| .+-|.+...-+|.+.-+|||+...|.-
T Consensus 330 TSRWAEAlR----------------------EisgRl----------------eEmPgeegyPaYL~srlA~fYERaG~v 371 (588)
T COG1155 330 TSRWAEALR----------------------EISGRL----------------EEMPGEEGYPAYLGSRLAEFYERAGRV 371 (588)
T ss_pred HHHHHHHHH----------------------HHhccc----------------ccCCcccccchHHHHHHHHHHHhcCee
Confidence 888888742 122222 245778888899999999999989988
Q ss_pred EEEEecC
Q psy13776 347 ALIIYDD 353 (539)
Q Consensus 347 VLli~Ds 353 (539)
+++=.++
T Consensus 372 ~~~~~~~ 378 (588)
T COG1155 372 RLVSPEE 378 (588)
T ss_pred eecCCCc
Confidence 7777766
No 482
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=85.85 E-value=0.6 Score=52.49 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=26.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+||+++|+|++|+|||||+ +.+.
T Consensus 359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl-~lL~ 388 (592)
T PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLA-SLLM 388 (592)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 45578899999999999999999998 6665
No 483
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=85.83 E-value=6 Score=39.32 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=17.3
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-..|.|++|+||||++ ..+.++
T Consensus 45 ~~~l~G~~G~GKTtl~-~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLI-RNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHH-HHHHHh
Confidence 5789999999999998 445443
No 484
>PRK08233 hypothetical protein; Provisional
Probab=85.71 E-value=0.65 Score=43.24 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=18.5
Q ss_pred cceeeeeccCCCCchHhHHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.-++|.|++|+||||++ ..++.
T Consensus 3 ~~iI~I~G~~GsGKtTla-~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLT-ERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHH-HHHHh
Confidence 456789999999999998 55553
No 485
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=85.60 E-value=0.67 Score=49.42 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=25.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.|-.|.-..++||+||||||++ .+|+
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlL-r~IA 50 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLL-RMIA 50 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 4567889999999999999999998 7776
No 486
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=85.52 E-value=0.66 Score=51.77 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=25.8
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|++++|.|++|+|||||+ +.|+.
T Consensus 359 inl~i~~Ge~i~IvG~sGsGKSTLl-klL~g 388 (576)
T TIGR02204 359 LNLTVRPGETVALVGPSGAGKSTLF-QLLLR 388 (576)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 3478899999999999999999998 66653
No 487
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=85.51 E-value=0.62 Score=53.65 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=26.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|-+||+++|.|++|+|||||+ ..+..
T Consensus 492 ~isl~i~~G~~vaIvG~SGsGKSTLl-klL~g 522 (708)
T TIGR01193 492 DISLTIKMNSKTTIVGMSGSGKSTLA-KLLVG 522 (708)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 44578889999999999999999998 66653
No 488
>PRK06217 hypothetical protein; Validated
Probab=85.51 E-value=0.65 Score=44.24 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.0
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+|+.|+|.+|+||||++ ..+.+.
T Consensus 2 ~~I~i~G~~GsGKSTla-~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLG-AALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHH
Confidence 57999999999999998 555543
No 489
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=85.45 E-value=1.7 Score=50.73 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=20.6
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
++-..+++.|++||||||+| ..|.++.
T Consensus 50 ~~~~slLL~GPpGtGKTTLA-~aIA~~~ 76 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLA-RIIANHT 76 (725)
T ss_pred CCCceEEEECCCCCCHHHHH-HHHHHHh
Confidence 44456789999999999998 5566543
No 490
>PF13245 AAA_19: Part of AAA domain
Probab=85.44 E-value=0.71 Score=38.53 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=18.6
Q ss_pred ccee-eeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRE-LIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~-lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+++. .|.|++|+|||++++..+....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444 4599999999988766666443
No 491
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=85.44 E-value=0.63 Score=51.74 Aligned_cols=30 Identities=33% Similarity=0.508 Sum_probs=25.9
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.-+.+-+|++.+|+|++|+|||||+ .+|+.
T Consensus 338 is~~i~~Ge~~~l~G~NGsGKSTLl-~~i~G 367 (530)
T PRK15064 338 LNLLLEAGERLAIIGENGVGKTTLL-RTLVG 367 (530)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 4578899999999999999999998 66653
No 492
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=85.35 E-value=1.9 Score=42.54 Aligned_cols=99 Identities=14% Similarity=0.203 Sum_probs=58.6
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEE
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYC 284 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~ 284 (539)
+|.=+.|.||+|+|||||. .++...... .+-.-+|=. ..|..|.+++-.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~-k~L~~~~~l-----~~SVS~TTR-------------------------~pR~gEv~G~dY 51 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLV-KALLEDDKL-----RFSVSATTR-------------------------KPRPGEVDGVDY 51 (191)
T ss_pred CceEEEEECCCCCCHHHHH-HHHHhhcCe-----EEEEEeccC-------------------------CCCCCCcCCcee
Confidence 6778899999999999998 666654421 111111110 112222233333
Q ss_pred EEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEec
Q psy13776 285 IYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYD 352 (539)
Q Consensus 285 Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~D 352 (539)
-|+ +..||.+-+.....+++..++-+ .|-.|.. -.|--.++|+||++-+|
T Consensus 52 ~Fv-------s~~EF~~~i~~~~fLE~a~~~gn--------yYGT~~~---~ve~~~~~G~~vildId 101 (191)
T COG0194 52 FFV-------TEEEFEELIERDEFLEWAEYHGN--------YYGTSRE---PVEQALAEGKDVILDID 101 (191)
T ss_pred EeC-------CHHHHHHHHhcCCcEEEEEEcCC--------cccCcHH---HHHHHHhcCCeEEEEEe
Confidence 332 45678888888888899887652 2222222 12333578999999998
No 493
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=85.29 E-value=0.66 Score=51.26 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=25.9
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLl-k~i~G 311 (510)
T PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELM-NCLFG 311 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999998 66664
No 494
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=85.22 E-value=0.7 Score=52.73 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=27.0
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+..
T Consensus 34 ~is~~v~~Ge~~~lvG~nGsGKSTLl-~~l~Gl 65 (623)
T PRK10261 34 NLSFSLQRGETLAIVGESGSGKSVTA-LALMRL 65 (623)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHH-HHHHcC
Confidence 45678889999999999999999998 666643
No 495
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=85.20 E-value=0.66 Score=51.95 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=26.8
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|++.+|+|++|+|||||+ .+|+.
T Consensus 23 ~is~~i~~Ge~~~liG~NGsGKSTLl-~~i~G 53 (552)
T TIGR03719 23 DISLSFFPGAKIGVLGLNGAGKSTLL-RIMAG 53 (552)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 44578999999999999999999998 66664
No 496
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=85.18 E-value=0.73 Score=50.12 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.2
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+-+|+..+|+|++|+|||||+ .+|..
T Consensus 23 s~~i~~Geiv~liGpNGaGKSTLL-k~LaG 51 (402)
T PRK09536 23 DLSVREGSLVGLVGPNGAGKTTLL-RAING 51 (402)
T ss_pred EEEECCCCEEEEECCCCchHHHHH-HHHhc
Confidence 467889999999999999999997 66663
No 497
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=85.11 E-value=1.6 Score=42.90 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=24.0
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+-+|+-..|.|++|+|||++++..+.+..
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~ 38 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIA 38 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999976655544
No 498
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=85.09 E-value=0.56 Score=47.90 Aligned_cols=32 Identities=31% Similarity=0.477 Sum_probs=27.7
Q ss_pred ccceeeee-eeeccccceeeeeccCCCCchHhH
Q psy13776 192 AGIKAVDS-LVPIGRGQRELIIGDRQTGKTALA 223 (539)
Q Consensus 192 TGIraID~-l~pIGrGQR~lI~g~~gtGKTtLa 223 (539)
-|++++|. =+.+-+|+..++|||.|.||||+-
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlf 47 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLF 47 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeee
Confidence 47788765 478999999999999999999985
No 499
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=85.08 E-value=0.66 Score=53.14 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=26.2
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.=+.+-+|++++|+|+.|+|||||+ .+|+..
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLl-k~l~G~ 361 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLI-KLLAGE 361 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 3467889999999999999999998 666643
No 500
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=85.06 E-value=0.69 Score=51.65 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=25.7
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+||+.+|+|++|+|||||+ +.|+.
T Consensus 341 ~i~~~i~~G~~~aivG~sGsGKSTL~-~ll~g 371 (547)
T PRK10522 341 PINLTIKRGELLFLIGGNGSGKSTLA-MLLTG 371 (547)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 33456779999999999999999998 66663
Done!