Query psy13776
Match_columns 539
No_of_seqs 278 out of 2083
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 20:13:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oaa_A ATP synthase subunit al 100.0 7E-107 2E-111 872.5 25.6 382 40-537 2-404 (513)
2 2qe7_A ATP synthase subunit al 100.0 1E-103 4E-108 849.1 30.0 382 40-537 2-393 (502)
3 2r9v_A ATP synthase subunit al 100.0 1E-103 3E-108 849.9 28.6 382 40-537 14-406 (515)
4 2ck3_A ATP synthase subunit al 100.0 9E-104 3E-108 851.0 27.3 390 40-537 2-401 (510)
5 1fx0_A ATP synthase alpha chai 100.0 1E-103 4E-108 849.6 23.3 382 40-537 3-394 (507)
6 3gqb_B V-type ATP synthase bet 100.0 7.3E-95 2.5E-99 773.6 26.2 368 71-537 4-393 (464)
7 3vr4_D V-type sodium ATPase su 100.0 9.6E-95 3.3E-99 772.8 24.6 360 73-537 10-390 (465)
8 2c61_A A-type ATP synthase non 100.0 2.6E-93 8.8E-98 764.8 24.8 360 73-537 12-391 (469)
9 2ck3_D ATP synthase subunit be 100.0 8E-90 2.7E-94 738.2 26.2 355 66-537 19-389 (482)
10 1fx0_B ATP synthase beta chain 100.0 7.8E-90 2.7E-94 740.7 22.8 356 65-537 24-402 (498)
11 3mfy_A V-type ATP synthase alp 100.0 5.2E-88 1.8E-92 732.0 7.9 354 75-537 4-473 (588)
12 3vr4_A V-type sodium ATPase ca 100.0 2.4E-86 8E-91 721.3 20.3 354 75-537 10-478 (600)
13 3gqb_A V-type ATP synthase alp 100.0 2E-86 6.7E-91 719.4 19.1 338 94-537 23-465 (578)
14 1sky_E F1-ATPase, F1-ATP synth 100.0 1.7E-83 5.9E-88 689.8 23.8 355 66-537 8-381 (473)
15 3l0o_A Transcription terminati 100.0 4.3E-73 1.5E-77 595.2 17.3 308 118-536 84-397 (427)
16 3ice_A Transcription terminati 100.0 1.7E-69 5.9E-74 568.6 15.3 294 128-537 91-397 (422)
17 2dpy_A FLII, flagellum-specifi 100.0 4E-55 1.4E-59 467.4 24.0 351 73-537 8-384 (438)
18 2obl_A ESCN; ATPase, hydrolase 100.0 1.4E-54 4.7E-59 450.6 16.4 284 143-536 2-294 (347)
19 3oaa_A ATP synthase subunit al 98.5 2E-08 6.9E-13 108.8 1.8 55 442-497 60-114 (513)
20 2ck3_A ATP synthase subunit al 98.4 7.6E-08 2.6E-12 104.5 2.3 55 442-497 60-114 (510)
21 2r9v_A ATP synthase subunit al 98.4 1.2E-07 4E-12 103.0 2.9 55 442-497 73-127 (515)
22 1fx0_A ATP synthase alpha chai 98.4 8.6E-08 2.9E-12 104.0 1.8 55 442-497 61-115 (507)
23 2qe7_A ATP synthase subunit al 98.3 1E-07 3.5E-12 103.3 1.6 55 442-497 60-114 (502)
24 3gqb_B V-type ATP synthase bet 98.0 1.2E-06 4.1E-11 94.1 0.9 55 442-497 44-99 (464)
25 3vr4_D V-type sodium ATPase su 97.9 1.6E-06 5.5E-11 93.2 1.1 56 442-498 48-104 (465)
26 2c61_A A-type ATP synthase non 97.9 1.9E-06 6.5E-11 92.9 0.8 56 442-498 50-105 (469)
27 3mfy_A V-type ATP synthase alp 97.9 2.3E-06 7.7E-11 93.9 0.8 59 441-500 36-94 (588)
28 2ck3_D ATP synthase subunit be 97.6 1.6E-05 5.3E-10 86.0 1.9 56 443-499 52-107 (482)
29 1sky_E F1-ATPase, F1-ATP synth 97.6 1.6E-05 5.6E-10 85.7 1.9 56 443-499 49-104 (473)
30 1fx0_B ATP synthase beta chain 97.6 2.1E-05 7.2E-10 85.2 2.7 55 443-498 64-118 (498)
31 3gqb_A V-type ATP synthase alp 97.5 1.9E-05 6.6E-10 86.6 1.1 58 442-500 36-93 (578)
32 3vr4_A V-type sodium ATPase ca 97.5 1.9E-05 6.5E-10 86.9 0.9 58 442-500 43-100 (600)
33 2zts_A Putative uncharacterize 97.5 0.0006 2E-08 64.4 11.1 44 187-230 9-54 (251)
34 2dpy_A FLII, flagellum-specifi 97.2 0.0001 3.6E-09 78.5 2.4 56 442-498 48-110 (438)
35 3io5_A Recombination and repai 97.0 0.00099 3.4E-08 68.9 7.6 42 188-230 5-52 (333)
36 2cvh_A DNA repair and recombin 96.7 0.0014 4.6E-08 61.0 5.0 38 190-228 2-41 (220)
37 2zr9_A Protein RECA, recombina 96.7 0.0024 8.1E-08 66.0 6.9 43 187-229 39-84 (349)
38 3hr8_A Protein RECA; alpha and 96.6 0.0022 7.5E-08 66.8 5.9 42 187-228 39-83 (356)
39 1v5w_A DMC1, meiotic recombina 96.4 0.014 4.8E-07 59.7 10.8 43 187-229 101-145 (343)
40 2i1q_A DNA repair and recombin 96.4 0.016 5.4E-07 58.1 10.7 43 187-229 77-121 (322)
41 1u94_A RECA protein, recombina 96.4 0.0037 1.3E-07 64.8 6.3 43 187-229 41-86 (356)
42 2z43_A DNA repair and recombin 96.3 0.0044 1.5E-07 62.7 6.3 43 187-229 86-130 (324)
43 1xp8_A RECA protein, recombina 96.3 0.0045 1.5E-07 64.5 6.3 43 187-229 52-97 (366)
44 4a74_A DNA repair and recombin 96.2 0.0012 4E-08 61.8 1.1 42 187-229 4-47 (231)
45 2ehv_A Hypothetical protein PH 96.1 0.0017 5.9E-08 61.4 1.9 41 187-228 9-51 (251)
46 2dr3_A UPF0273 protein PH0284; 96.1 0.0038 1.3E-07 58.8 4.1 42 188-229 3-46 (247)
47 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0049 1.7E-07 57.2 4.6 40 188-228 3-44 (235)
48 3lda_A DNA repair protein RAD5 95.6 0.03 1E-06 59.0 9.0 42 187-228 157-200 (400)
49 1n0w_A DNA repair protein RAD5 95.6 0.0035 1.2E-07 59.0 1.6 42 187-229 3-46 (243)
50 4b4t_L 26S protease subunit RP 95.6 0.03 1E-06 59.8 8.9 24 209-233 218-241 (437)
51 3bh0_A DNAB-like replicative h 95.3 0.065 2.2E-06 54.0 10.0 43 187-229 48-91 (315)
52 3l0o_A Transcription terminati 95.3 0.00086 2.9E-08 71.1 -4.0 43 234-276 238-280 (427)
53 3cmw_A Protein RECA, recombina 95.3 0.015 5.1E-07 71.3 6.1 114 187-361 12-128 (1706)
54 4b4t_M 26S protease regulatory 95.1 0.039 1.3E-06 58.9 7.7 24 209-233 218-241 (434)
55 2qby_A CDC6 homolog 1, cell di 94.8 0.094 3.2E-06 52.2 9.3 27 204-231 43-69 (386)
56 2v1u_A Cell division control p 94.8 0.081 2.8E-06 52.7 8.9 27 204-231 42-68 (387)
57 1fnn_A CDC6P, cell division co 94.7 0.14 4.6E-06 51.4 10.4 23 208-231 46-68 (389)
58 4b4t_J 26S protease regulatory 94.7 0.086 2.9E-06 55.8 9.2 24 209-233 185-208 (405)
59 3ney_A 55 kDa erythrocyte memb 94.6 0.93 3.2E-05 43.1 15.2 29 201-230 14-42 (197)
60 1w5s_A Origin recognition comp 94.6 0.12 4E-06 52.3 9.6 25 205-230 49-75 (412)
61 3cmu_A Protein RECA, recombina 94.5 0.033 1.1E-06 69.3 6.2 114 187-361 12-128 (2050)
62 4b4t_K 26S protease regulatory 94.4 0.084 2.9E-06 56.2 8.4 24 209-233 209-232 (428)
63 4b4t_I 26S protease regulatory 94.4 0.11 3.7E-06 55.5 9.1 24 209-233 219-242 (437)
64 3cmw_A Protein RECA, recombina 94.3 0.037 1.3E-06 67.9 6.0 44 187-230 361-407 (1706)
65 2r6a_A DNAB helicase, replicat 94.1 0.099 3.4E-06 55.3 8.0 44 187-230 183-227 (454)
66 1zp6_A Hypothetical protein AT 93.8 0.028 9.6E-07 51.1 2.8 28 200-228 3-30 (191)
67 4b4t_H 26S protease regulatory 93.8 0.15 5.2E-06 54.9 8.8 25 208-233 245-269 (467)
68 1nlf_A Regulatory protein REPA 93.7 0.03 1E-06 54.8 2.9 39 187-225 10-49 (279)
69 3bs4_A Uncharacterized protein 93.6 0.32 1.1E-05 48.3 10.3 42 190-231 3-46 (260)
70 3ice_A Transcription terminati 93.5 0.004 1.4E-07 66.1 -4.0 43 234-276 237-279 (422)
71 3cmu_A Protein RECA, recombina 93.5 0.064 2.2E-06 66.8 5.9 44 187-230 361-407 (2050)
72 3ec2_A DNA replication protein 93.5 0.04 1.4E-06 50.0 3.2 29 202-231 34-62 (180)
73 1q57_A DNA primase/helicase; d 93.4 0.13 4.6E-06 54.8 7.7 44 187-230 221-266 (503)
74 2q6t_A DNAB replication FORK h 93.4 0.2 6.9E-06 52.7 8.9 43 188-230 181-224 (444)
75 4eun_A Thermoresistant glucoki 93.0 0.051 1.8E-06 50.4 3.1 39 190-229 13-51 (200)
76 1cr0_A DNA primase/helicase; R 92.7 0.034 1.2E-06 54.7 1.7 42 187-229 14-57 (296)
77 1znw_A Guanylate kinase, GMP k 92.7 0.057 2E-06 50.5 3.0 28 202-230 16-43 (207)
78 1pzn_A RAD51, DNA repair and r 92.5 0.036 1.2E-06 56.9 1.5 41 187-228 110-152 (349)
79 1z6g_A Guanylate kinase; struc 92.4 0.06 2E-06 51.2 2.9 29 200-229 17-45 (218)
80 4gp7_A Metallophosphoesterase; 92.4 0.062 2.1E-06 48.9 2.8 23 201-223 4-26 (171)
81 3tr0_A Guanylate kinase, GMP k 92.3 0.068 2.3E-06 49.0 3.0 27 203-230 4-30 (205)
82 4a1f_A DNAB helicase, replicat 92.3 0.39 1.3E-05 49.5 8.9 43 187-229 26-69 (338)
83 3tif_A Uncharacterized ABC tra 92.1 0.077 2.6E-06 51.4 3.2 30 198-228 23-52 (235)
84 2qby_B CDC6 homolog 3, cell di 91.9 0.41 1.4E-05 48.0 8.4 26 205-231 44-69 (384)
85 2qz4_A Paraplegin; AAA+, SPG7, 91.9 0.65 2.2E-05 43.9 9.4 25 207-232 40-64 (262)
86 2cbz_A Multidrug resistance-as 91.9 0.085 2.9E-06 51.1 3.2 30 198-228 23-52 (237)
87 2pcj_A ABC transporter, lipopr 91.9 0.083 2.9E-06 50.7 3.1 30 198-228 22-51 (224)
88 3c8u_A Fructokinase; YP_612366 91.7 0.093 3.2E-06 49.0 3.2 27 203-230 19-45 (208)
89 2j41_A Guanylate kinase; GMP, 91.7 0.089 3E-06 48.2 3.0 27 202-229 2-28 (207)
90 2d2e_A SUFC protein; ABC-ATPas 91.6 0.11 3.7E-06 50.7 3.7 31 198-229 21-51 (250)
91 2ff7_A Alpha-hemolysin translo 91.6 0.093 3.2E-06 51.3 3.2 30 198-228 27-56 (247)
92 3eie_A Vacuolar protein sortin 91.5 0.27 9.4E-06 49.1 6.6 25 207-232 52-76 (322)
93 4g1u_C Hemin import ATP-bindin 91.4 0.098 3.3E-06 51.8 3.2 29 199-228 30-58 (266)
94 3h4m_A Proteasome-activating n 91.4 0.64 2.2E-05 44.8 9.0 27 205-232 50-76 (285)
95 2pze_A Cystic fibrosis transme 91.4 0.1 3.5E-06 50.3 3.2 31 198-229 26-56 (229)
96 1b0u_A Histidine permease; ABC 91.4 0.1 3.5E-06 51.4 3.2 30 198-228 24-53 (262)
97 2zu0_C Probable ATP-dependent 91.3 0.12 4.1E-06 51.0 3.7 30 199-229 39-68 (267)
98 3te6_A Regulatory protein SIR3 91.2 0.41 1.4E-05 48.9 7.6 28 203-231 42-69 (318)
99 1mv5_A LMRA, multidrug resista 91.2 0.11 3.7E-06 50.5 3.2 30 198-228 20-49 (243)
100 3gfo_A Cobalt import ATP-bindi 91.2 0.11 3.6E-06 52.0 3.2 30 198-228 26-55 (275)
101 2olj_A Amino acid ABC transpor 91.2 0.11 3.7E-06 51.5 3.2 30 198-228 42-71 (263)
102 1l8q_A Chromosomal replication 91.2 0.2 6.8E-06 49.8 5.2 26 205-231 36-61 (324)
103 1htw_A HI0065; nucleotide-bind 91.2 0.1 3.5E-06 47.7 2.8 29 201-230 28-56 (158)
104 1vpl_A ABC transporter, ATP-bi 91.2 0.11 3.8E-06 51.2 3.2 29 199-228 34-62 (256)
105 2ixe_A Antigen peptide transpo 91.1 0.11 3.8E-06 51.5 3.2 30 198-228 37-66 (271)
106 1sgw_A Putative ABC transporte 91.1 0.11 3.7E-06 49.9 3.0 29 199-228 28-56 (214)
107 1ji0_A ABC transporter; ATP bi 91.1 0.12 3.9E-06 50.2 3.2 29 199-228 25-53 (240)
108 2ihy_A ABC transporter, ATP-bi 91.0 0.11 3.8E-06 51.8 3.2 30 198-228 39-68 (279)
109 2ghi_A Transport protein; mult 91.0 0.11 3.9E-06 51.0 3.2 29 199-228 39-67 (260)
110 2jeo_A Uridine-cytidine kinase 91.0 0.11 3.8E-06 49.9 3.0 29 200-229 19-47 (245)
111 1g6h_A High-affinity branched- 91.0 0.1 3.5E-06 51.1 2.8 29 199-228 26-54 (257)
112 2vhj_A Ntpase P4, P4; non- hyd 90.9 0.18 6.2E-06 52.0 4.6 43 187-230 103-146 (331)
113 2qi9_C Vitamin B12 import ATP- 90.9 0.12 4.1E-06 50.7 3.2 30 198-228 18-47 (249)
114 2yz2_A Putative ABC transporte 90.8 0.13 4.3E-06 50.8 3.2 29 199-228 26-54 (266)
115 2nq2_C Hypothetical ABC transp 90.7 0.12 4.3E-06 50.6 3.1 30 199-229 24-53 (253)
116 3lnc_A Guanylate kinase, GMP k 90.5 0.1 3.5E-06 49.4 2.2 27 201-228 22-48 (231)
117 1kgd_A CASK, peripheral plasma 90.4 0.15 5.1E-06 46.6 3.2 25 205-230 4-28 (180)
118 3vaa_A Shikimate kinase, SK; s 90.2 0.15 5.2E-06 47.1 3.1 30 200-230 19-48 (199)
119 3fvq_A Fe(3+) IONS import ATP- 90.2 0.17 5.7E-06 52.7 3.7 31 198-229 22-52 (359)
120 3asz_A Uridine kinase; cytidin 90.2 0.15 5E-06 47.2 3.0 27 203-230 3-29 (211)
121 1xwi_A SKD1 protein; VPS4B, AA 90.2 0.68 2.3E-05 46.5 8.1 24 207-231 46-69 (322)
122 2b8t_A Thymidine kinase; deoxy 90.2 2.5 8.6E-05 40.8 11.8 27 204-230 10-36 (223)
123 1pui_A ENGB, probable GTP-bind 90.2 0.089 3.1E-06 48.1 1.4 31 196-228 17-47 (210)
124 2ce7_A Cell division protein F 90.1 0.7 2.4E-05 49.7 8.5 23 209-232 52-74 (476)
125 3lxw_A GTPase IMAP family memb 90.0 1.3 4.5E-05 42.6 9.7 23 208-231 23-45 (247)
126 2kjq_A DNAA-related protein; s 90.0 0.17 5.7E-06 45.5 3.1 26 205-231 35-60 (149)
127 1lvg_A Guanylate kinase, GMP k 90.0 0.15 5E-06 47.6 2.8 25 205-230 3-27 (198)
128 3pvs_A Replication-associated 90.0 0.57 1.9E-05 49.7 7.7 24 207-231 51-74 (447)
129 2z4s_A Chromosomal replication 89.9 0.45 1.5E-05 50.2 6.8 25 206-231 130-154 (440)
130 2v9p_A Replication protein E1; 89.9 0.1 3.6E-06 53.0 1.8 30 199-229 119-148 (305)
131 1z6t_A APAF-1, apoptotic prote 89.8 0.59 2E-05 50.1 7.8 22 206-228 147-168 (591)
132 1z47_A CYSA, putative ABC-tran 89.8 0.19 6.4E-06 52.2 3.7 31 198-229 33-63 (355)
133 3b85_A Phosphate starvation-in 89.7 0.15 5E-06 48.7 2.6 27 203-230 19-45 (208)
134 2yyz_A Sugar ABC transporter, 89.7 0.2 6.7E-06 52.1 3.7 31 198-229 21-51 (359)
135 3bgw_A DNAB-like replicative h 89.7 0.2 6.9E-06 53.2 3.9 45 187-231 177-222 (444)
136 1v43_A Sugar-binding transport 89.6 0.2 6.9E-06 52.2 3.7 31 198-229 29-59 (372)
137 2it1_A 362AA long hypothetical 89.6 0.2 7E-06 52.0 3.7 31 198-229 21-51 (362)
138 3rlf_A Maltose/maltodextrin im 89.5 0.21 7.1E-06 52.4 3.7 31 198-229 21-51 (381)
139 1g29_1 MALK, maltose transport 89.4 0.21 7.2E-06 52.0 3.7 31 198-229 21-51 (372)
140 2qt1_A Nicotinamide riboside k 89.3 0.17 5.8E-06 46.8 2.7 28 201-229 16-43 (207)
141 2bbs_A Cystic fibrosis transme 89.3 0.19 6.4E-06 50.5 3.2 30 199-229 57-86 (290)
142 2x8a_A Nuclear valosin-contain 89.3 0.17 5.8E-06 50.0 2.8 27 202-231 42-68 (274)
143 1ixz_A ATP-dependent metallopr 89.3 0.17 6E-06 48.3 2.8 26 203-231 48-73 (254)
144 1y63_A LMAJ004144AAA protein; 89.2 0.22 7.4E-06 45.6 3.2 28 202-230 6-33 (184)
145 3tui_C Methionine import ATP-b 89.0 0.24 8.1E-06 51.7 3.7 33 195-228 42-75 (366)
146 3pfi_A Holliday junction ATP-d 88.9 0.47 1.6E-05 47.1 5.7 22 208-230 57-78 (338)
147 3gd7_A Fusion complex of cysti 88.8 0.24 8.3E-06 51.9 3.7 30 199-229 40-69 (390)
148 2i3b_A HCR-ntpase, human cance 88.8 0.21 7.2E-06 46.9 2.9 25 206-231 1-25 (189)
149 3bos_A Putative DNA replicatio 88.8 0.23 8E-06 45.8 3.2 29 203-232 49-77 (242)
150 3d31_A Sulfate/molybdate ABC t 88.8 0.18 6E-06 52.2 2.5 31 198-229 18-48 (348)
151 2pjz_A Hypothetical protein ST 88.8 0.22 7.6E-06 49.2 3.2 27 200-228 25-51 (263)
152 2qp9_X Vacuolar protein sortin 88.7 0.62 2.1E-05 47.5 6.5 24 208-232 86-109 (355)
153 3nh6_A ATP-binding cassette SU 88.5 0.16 5.4E-06 51.6 2.0 30 198-228 72-101 (306)
154 1jbk_A CLPB protein; beta barr 88.5 0.26 8.9E-06 43.3 3.1 27 204-231 41-67 (195)
155 1knq_A Gluconate kinase; ALFA/ 88.2 0.27 9.3E-06 44.0 3.1 24 205-229 7-30 (175)
156 1kag_A SKI, shikimate kinase I 88.1 0.26 8.8E-06 43.9 2.9 24 206-230 4-27 (173)
157 3aez_A Pantothenate kinase; tr 88.0 0.25 8.5E-06 50.0 3.0 28 202-230 86-113 (312)
158 1iy2_A ATP-dependent metallopr 87.9 0.24 8.2E-06 48.2 2.8 26 203-231 72-97 (278)
159 1ye8_A Protein THEP1, hypothet 87.8 0.28 9.4E-06 45.4 3.0 23 208-231 2-24 (178)
160 1oxx_K GLCV, glucose, ABC tran 87.7 0.18 6.2E-06 52.1 1.8 31 198-229 23-53 (353)
161 1s96_A Guanylate kinase, GMP k 87.7 0.27 9.4E-06 47.1 3.0 26 204-230 14-39 (219)
162 1tf7_A KAIC; homohexamer, hexa 87.6 0.17 5.9E-06 54.4 1.7 37 188-224 19-57 (525)
163 3pqc_A Probable GTP-binding pr 87.6 3.6 0.00012 36.3 10.2 23 208-231 25-47 (195)
164 3dz8_A RAS-related protein RAB 87.5 1.4 4.7E-05 39.6 7.4 23 208-231 25-47 (191)
165 2obl_A ESCN; ATPase, hydrolase 87.5 0.14 4.7E-06 52.8 0.8 21 477-498 3-23 (347)
166 3a00_A Guanylate kinase, GMP k 87.4 0.29 9.9E-06 44.8 2.9 24 206-230 1-24 (186)
167 2a5y_B CED-4; apoptosis; HET: 87.3 1.7 5.7E-05 46.8 9.2 22 207-229 153-174 (549)
168 1sq5_A Pantothenate kinase; P- 87.1 0.32 1.1E-05 48.7 3.1 28 202-230 76-103 (308)
169 3kl4_A SRP54, signal recogniti 87.0 1.1 3.9E-05 47.5 7.5 23 205-228 96-118 (433)
170 3kta_A Chromosome segregation 87.0 0.36 1.2E-05 43.5 3.2 28 199-228 20-47 (182)
171 3sfz_A APAF-1, apoptotic pepti 86.9 0.44 1.5E-05 54.9 4.6 17 208-224 149-165 (1249)
172 2onk_A Molybdate/tungstate ABC 86.9 0.39 1.3E-05 46.7 3.6 29 198-228 17-45 (240)
173 3uie_A Adenylyl-sulfate kinase 86.8 0.36 1.2E-05 44.6 3.1 25 204-229 23-47 (200)
174 3tau_A Guanylate kinase, GMP k 86.5 0.36 1.2E-05 45.1 3.0 26 204-230 6-31 (208)
175 2npi_A Protein CLP1; CLP1-PCF1 86.4 0.27 9.2E-06 52.6 2.3 30 201-231 133-162 (460)
176 2bdt_A BH3686; alpha-beta prot 86.1 0.36 1.2E-05 43.8 2.7 22 206-228 2-23 (189)
177 3cf2_A TER ATPase, transitiona 86.1 0.93 3.2E-05 51.9 6.6 26 207-233 512-537 (806)
178 2gj8_A MNME, tRNA modification 86.1 0.33 1.1E-05 43.5 2.4 25 205-230 3-27 (172)
179 2qor_A Guanylate kinase; phosp 86.1 0.39 1.3E-05 44.5 3.0 27 203-230 9-35 (204)
180 2p65_A Hypothetical protein PF 86.0 0.32 1.1E-05 42.8 2.3 27 204-231 41-67 (187)
181 1zbd_A Rabphilin-3A; G protein 86.0 1.7 5.8E-05 39.2 7.2 23 208-231 10-32 (203)
182 1cke_A CK, MSSA, protein (cyti 86.0 0.42 1.4E-05 44.4 3.2 24 206-230 5-28 (227)
183 1zu4_A FTSY; GTPase, signal re 86.0 5 0.00017 40.6 11.4 26 202-228 101-126 (320)
184 2bbw_A Adenylate kinase 4, AK4 85.9 0.38 1.3E-05 45.9 2.9 23 205-228 26-48 (246)
185 3cm0_A Adenylate kinase; ATP-b 85.9 0.4 1.4E-05 43.1 2.9 24 205-229 3-26 (186)
186 1lw7_A Transcriptional regulat 85.9 0.32 1.1E-05 49.7 2.4 28 202-230 164-193 (365)
187 3tkl_A RAS-related protein RAB 85.8 1.1 3.9E-05 39.8 5.9 23 208-231 18-40 (196)
188 2eyu_A Twitching motility prot 85.7 0.41 1.4E-05 47.1 3.1 27 203-230 22-48 (261)
189 1tf7_A KAIC; homohexamer, hexa 85.7 0.23 8E-06 53.4 1.4 42 187-229 260-303 (525)
190 1rz3_A Hypothetical protein rb 85.2 0.48 1.6E-05 44.0 3.1 27 202-229 18-44 (201)
191 1yqt_A RNAse L inhibitor; ATP- 85.0 0.48 1.6E-05 51.5 3.5 32 196-228 37-68 (538)
192 1c9k_A COBU, adenosylcobinamid 84.9 0.54 1.8E-05 44.3 3.3 16 209-224 2-17 (180)
193 3n70_A Transport activator; si 84.8 0.45 1.5E-05 41.9 2.6 24 206-230 24-47 (145)
194 1t9h_A YLOQ, probable GTPase E 84.7 0.15 5.1E-06 51.8 -0.6 31 197-228 164-194 (307)
195 2qm8_A GTPase/ATPase; G protei 84.4 0.38 1.3E-05 49.1 2.2 30 200-230 49-78 (337)
196 3cf0_A Transitional endoplasmi 84.2 0.53 1.8E-05 46.6 3.2 26 205-231 48-73 (301)
197 2yv5_A YJEQ protein; hydrolase 84.1 0.28 9.6E-06 49.1 1.0 31 197-228 156-186 (302)
198 2w58_A DNAI, primosome compone 84.1 0.58 2E-05 42.8 3.1 24 207-231 55-78 (202)
199 2chg_A Replication factor C sm 84.1 0.57 1.9E-05 42.1 3.0 24 206-230 38-61 (226)
200 3b9q_A Chloroplast SRP recepto 83.9 0.56 1.9E-05 47.2 3.1 28 202-230 96-123 (302)
201 2efe_B Small GTP-binding prote 83.8 2.6 8.8E-05 36.9 7.2 22 208-230 14-35 (181)
202 4e22_A Cytidylate kinase; P-lo 83.5 0.55 1.9E-05 45.4 2.9 24 204-228 25-48 (252)
203 3j16_B RLI1P; ribosome recycli 83.4 0.6 2.1E-05 51.7 3.5 32 196-228 93-124 (608)
204 2yl4_A ATP-binding cassette SU 83.4 0.59 2E-05 51.1 3.3 30 198-228 362-391 (595)
205 2wwf_A Thymidilate kinase, put 83.4 0.68 2.3E-05 42.4 3.3 26 204-230 8-33 (212)
206 3b60_A Lipid A export ATP-bind 83.3 0.57 1.9E-05 51.1 3.2 30 198-228 361-390 (582)
207 3b9p_A CG5977-PA, isoform A; A 83.3 0.6 2.1E-05 45.4 3.1 26 206-232 54-79 (297)
208 1yqt_A RNAse L inhibitor; ATP- 83.3 0.58 2E-05 50.8 3.2 27 202-229 308-334 (538)
209 1lv7_A FTSH; alpha/beta domain 83.2 0.57 1.9E-05 44.7 2.8 22 209-231 48-69 (257)
210 3b5x_A Lipid A export ATP-bind 83.1 0.6 2E-05 50.9 3.2 30 199-229 362-391 (582)
211 3iij_A Coilin-interacting nucl 83.0 0.64 2.2E-05 41.8 2.9 25 204-229 9-33 (180)
212 1kht_A Adenylate kinase; phosp 83.0 0.69 2.3E-05 41.4 3.1 24 205-229 2-25 (192)
213 1oix_A RAS-related protein RAB 82.9 0.58 2E-05 42.6 2.6 22 208-230 31-52 (191)
214 1rj9_A FTSY, signal recognitio 82.8 0.63 2.2E-05 46.9 3.1 26 204-230 100-125 (304)
215 3kb2_A SPBC2 prophage-derived 82.8 0.68 2.3E-05 40.7 2.9 22 208-230 3-24 (173)
216 3t15_A Ribulose bisphosphate c 82.6 0.59 2E-05 46.3 2.7 23 209-232 39-61 (293)
217 1in4_A RUVB, holliday junction 82.5 0.61 2.1E-05 46.9 2.8 24 207-231 52-75 (334)
218 3u61_B DNA polymerase accessor 82.5 1.5 5.1E-05 43.2 5.6 23 208-231 49-72 (324)
219 1vt4_I APAF-1 related killer D 82.5 2.3 7.9E-05 50.5 7.9 22 207-229 151-172 (1221)
220 2f9l_A RAB11B, member RAS onco 82.4 0.68 2.3E-05 42.1 2.8 22 208-230 7-28 (199)
221 2pez_A Bifunctional 3'-phospho 82.3 0.76 2.6E-05 41.3 3.1 24 205-229 4-27 (179)
222 1jr3_A DNA polymerase III subu 82.2 7.1 0.00024 38.6 10.5 23 208-231 40-62 (373)
223 1z2a_A RAS-related protein RAB 82.0 0.69 2.4E-05 39.9 2.6 22 208-230 7-28 (168)
224 3qf4_B Uncharacterized ABC tra 82.0 0.67 2.3E-05 50.8 3.1 30 198-228 373-402 (598)
225 2dyk_A GTP-binding protein; GT 82.0 0.7 2.4E-05 39.7 2.6 22 208-230 3-24 (161)
226 4a82_A Cystic fibrosis transme 81.9 0.67 2.3E-05 50.5 3.0 26 198-223 359-384 (578)
227 1r8s_A ADP-ribosylation factor 81.8 0.76 2.6E-05 39.7 2.8 23 208-231 2-24 (164)
228 2plr_A DTMP kinase, probable t 81.8 0.81 2.8E-05 41.6 3.1 24 205-229 3-26 (213)
229 3ux8_A Excinuclease ABC, A sub 81.8 0.62 2.1E-05 51.6 2.8 26 198-223 36-61 (670)
230 1kao_A RAP2A; GTP-binding prot 81.7 0.7 2.4E-05 39.6 2.5 22 208-230 5-26 (167)
231 2if2_A Dephospho-COA kinase; a 81.7 0.73 2.5E-05 42.2 2.8 21 208-229 3-23 (204)
232 3bk7_A ABC transporter ATP-bin 81.6 0.67 2.3E-05 51.2 2.9 32 196-228 107-138 (607)
233 3syl_A Protein CBBX; photosynt 81.5 0.77 2.6E-05 44.7 3.0 25 206-231 67-91 (309)
234 1qhx_A CPT, protein (chloramph 81.5 0.87 3E-05 40.6 3.2 23 206-229 3-25 (178)
235 3dl0_A Adenylate kinase; phosp 81.4 0.79 2.7E-05 42.4 3.0 21 208-229 2-22 (216)
236 1ek0_A Protein (GTP-binding pr 81.3 0.73 2.5E-05 39.7 2.5 23 208-231 5-27 (170)
237 1u0l_A Probable GTPase ENGC; p 81.3 0.39 1.3E-05 48.0 0.8 31 197-228 160-190 (301)
238 2iw3_A Elongation factor 3A; a 81.2 0.85 2.9E-05 53.3 3.7 30 199-229 454-483 (986)
239 3fb4_A Adenylate kinase; psych 81.2 0.81 2.8E-05 42.3 3.0 21 208-229 2-22 (216)
240 3ozx_A RNAse L inhibitor; ATP 81.2 0.66 2.3E-05 50.5 2.7 27 201-228 289-315 (538)
241 1c1y_A RAS-related protein RAP 81.2 0.74 2.5E-05 39.7 2.5 22 208-230 5-26 (167)
242 1njg_A DNA polymerase III subu 81.2 0.78 2.7E-05 41.5 2.8 23 208-231 47-69 (250)
243 3trf_A Shikimate kinase, SK; a 81.1 0.89 3E-05 40.8 3.1 23 206-229 5-27 (185)
244 2gza_A Type IV secretion syste 81.1 0.51 1.8E-05 48.5 1.7 29 200-229 169-197 (361)
245 2ce2_X GTPase HRAS; signaling 81.0 0.79 2.7E-05 39.1 2.6 22 208-230 5-26 (166)
246 3bk7_A ABC transporter ATP-bin 81.0 0.79 2.7E-05 50.7 3.2 27 202-229 378-404 (607)
247 1g16_A RAS-related protein SEC 80.9 0.75 2.6E-05 39.8 2.4 22 208-230 5-26 (170)
248 2og2_A Putative signal recogni 80.9 0.83 2.8E-05 47.4 3.2 28 202-230 153-180 (359)
249 3dm5_A SRP54, signal recogniti 80.9 3.9 0.00013 43.7 8.4 24 205-229 99-122 (443)
250 1u8z_A RAS-related protein RAL 80.9 0.78 2.7E-05 39.4 2.5 22 208-230 6-27 (168)
251 1zuh_A Shikimate kinase; alpha 80.9 0.89 3E-05 40.3 3.0 23 207-230 8-30 (168)
252 2qag_B Septin-6, protein NEDD5 80.6 0.7 2.4E-05 49.1 2.6 30 200-230 34-65 (427)
253 2r62_A Cell division protease 80.6 0.63 2.1E-05 44.6 2.0 23 209-232 47-69 (268)
254 2hup_A RAS-related protein RAB 80.6 3.2 0.00011 37.8 6.8 22 208-230 31-52 (201)
255 1svm_A Large T antigen; AAA+ f 80.6 0.78 2.7E-05 47.8 2.8 28 201-229 164-191 (377)
256 1z08_A RAS-related protein RAB 80.5 0.83 2.8E-05 39.6 2.6 22 208-230 8-29 (170)
257 2nzj_A GTP-binding protein REM 80.5 0.69 2.4E-05 40.3 2.1 22 208-230 6-27 (175)
258 3bc1_A RAS-related protein RAB 80.5 0.8 2.7E-05 40.4 2.5 23 208-231 13-35 (195)
259 1nn5_A Similar to deoxythymidy 80.5 0.95 3.3E-05 41.4 3.1 26 204-230 7-32 (215)
260 3sop_A Neuronal-specific septi 80.5 0.82 2.8E-05 45.1 2.9 23 208-231 4-26 (270)
261 3cf2_A TER ATPase, transitiona 80.4 1.7 6E-05 49.7 5.9 23 209-232 241-263 (806)
262 3uk6_A RUVB-like 2; hexameric 80.4 0.87 3E-05 45.5 3.0 25 206-231 70-94 (368)
263 2vli_A Antibiotic resistance p 80.4 0.84 2.9E-05 40.7 2.7 23 205-228 4-26 (183)
264 2orw_A Thymidine kinase; TMTK, 80.4 0.97 3.3E-05 41.9 3.2 26 205-230 2-27 (184)
265 1z0j_A RAB-22, RAS-related pro 80.4 0.82 2.8E-05 39.5 2.5 23 208-231 8-30 (170)
266 1d2n_A N-ethylmaleimide-sensit 80.3 0.84 2.9E-05 44.0 2.8 25 206-231 64-88 (272)
267 2v54_A DTMP kinase, thymidylat 80.2 0.95 3.2E-05 41.2 3.0 24 205-229 3-26 (204)
268 1ofh_A ATP-dependent HSL prote 80.2 0.89 3.1E-05 43.9 3.0 25 206-231 50-74 (310)
269 2hxs_A RAB-26, RAS-related pro 80.2 0.96 3.3E-05 39.6 2.9 22 208-230 8-29 (178)
270 2rcn_A Probable GTPase ENGC; Y 80.1 0.46 1.6E-05 49.3 0.9 31 198-229 207-237 (358)
271 1wms_A RAB-9, RAB9, RAS-relate 80.0 0.85 2.9E-05 39.9 2.5 22 208-230 9-30 (177)
272 2wjg_A FEOB, ferrous iron tran 80.0 0.83 2.8E-05 40.6 2.5 22 208-230 9-30 (188)
273 1r2q_A RAS-related protein RAB 79.9 0.87 3E-05 39.2 2.5 22 208-230 8-29 (170)
274 1tev_A UMP-CMP kinase; ploop, 79.9 1 3.5E-05 40.2 3.1 23 206-229 3-25 (196)
275 2wji_A Ferrous iron transport 79.8 0.81 2.8E-05 40.3 2.3 21 208-229 5-25 (165)
276 2yvu_A Probable adenylyl-sulfa 79.7 1.1 3.7E-05 40.6 3.2 29 201-230 8-36 (186)
277 2fn4_A P23, RAS-related protei 79.7 0.91 3.1E-05 39.7 2.6 22 208-230 11-32 (181)
278 3ux8_A Excinuclease ABC, A sub 79.7 0.8 2.8E-05 50.7 2.8 24 200-223 342-365 (670)
279 3nwj_A ATSK2; P loop, shikimat 79.6 0.76 2.6E-05 45.0 2.3 28 201-229 40-70 (250)
280 2yhs_A FTSY, cell division pro 79.6 0.9 3.1E-05 49.4 3.0 29 201-230 288-316 (503)
281 2qgz_A Helicase loader, putati 79.6 0.99 3.4E-05 45.2 3.2 27 205-232 151-177 (308)
282 3qf4_A ABC transporter, ATP-bi 79.5 0.89 3E-05 49.8 3.0 30 198-228 361-390 (587)
283 2c95_A Adenylate kinase 1; tra 79.5 1.1 3.7E-05 40.4 3.1 25 204-229 7-31 (196)
284 2rhm_A Putative kinase; P-loop 79.4 1.1 3.8E-05 40.2 3.1 24 205-229 4-27 (193)
285 4dsu_A GTPase KRAS, isoform 2B 79.4 0.92 3.1E-05 40.0 2.6 23 208-231 6-28 (189)
286 1z0f_A RAB14, member RAS oncog 79.4 0.92 3.2E-05 39.5 2.5 23 208-231 17-39 (179)
287 1odf_A YGR205W, hypothetical 3 79.3 0.99 3.4E-05 45.1 3.0 25 204-229 29-53 (290)
288 2y8e_A RAB-protein 6, GH09086P 79.3 0.92 3.1E-05 39.5 2.5 22 208-230 16-37 (179)
289 1upt_A ARL1, ADP-ribosylation 79.2 0.95 3.2E-05 39.2 2.6 23 207-230 8-30 (171)
290 1ky3_A GTP-binding protein YPT 79.2 0.98 3.3E-05 39.5 2.6 22 208-230 10-31 (182)
291 3be4_A Adenylate kinase; malar 79.1 1.2 3.9E-05 41.7 3.3 24 205-229 4-27 (217)
292 1vma_A Cell division protein F 79.0 6.4 0.00022 39.6 8.9 25 203-228 101-125 (306)
293 2erx_A GTP-binding protein DI- 78.8 0.98 3.4E-05 39.0 2.5 22 208-230 5-26 (172)
294 2iyv_A Shikimate kinase, SK; t 78.8 1.1 3.7E-05 40.4 2.8 22 207-229 3-24 (184)
295 2ged_A SR-beta, signal recogni 78.8 1 3.4E-05 40.3 2.6 22 208-230 50-71 (193)
296 3q85_A GTP-binding protein REM 78.7 0.86 2.9E-05 39.5 2.1 20 208-228 4-23 (169)
297 2bwj_A Adenylate kinase 5; pho 78.7 1.1 3.8E-05 40.4 2.9 24 205-229 11-34 (199)
298 3lw7_A Adenylate kinase relate 78.6 0.77 2.6E-05 39.9 1.8 19 208-227 3-21 (179)
299 3ihw_A Centg3; RAS, centaurin, 78.5 0.99 3.4E-05 40.7 2.5 22 208-230 22-43 (184)
300 1jjv_A Dephospho-COA kinase; P 78.4 0.98 3.3E-05 41.5 2.5 20 208-228 4-23 (206)
301 2jaq_A Deoxyguanosine kinase; 78.3 1.2 4E-05 40.3 3.0 21 208-229 2-22 (205)
302 1zd8_A GTP:AMP phosphotransfer 78.2 1.2 4.1E-05 41.8 3.0 25 204-229 5-29 (227)
303 2bme_A RAB4A, RAS-related prot 78.1 1 3.6E-05 39.7 2.5 23 208-231 12-34 (186)
304 3kkq_A RAS-related protein M-R 78.1 1.1 3.8E-05 39.6 2.7 22 208-230 20-41 (183)
305 3con_A GTPase NRAS; structural 78.0 1.1 3.6E-05 40.0 2.6 22 208-230 23-44 (190)
306 1via_A Shikimate kinase; struc 78.0 1.1 3.9E-05 40.0 2.8 22 208-230 6-27 (175)
307 2oil_A CATX-8, RAS-related pro 78.0 1.1 3.6E-05 40.3 2.5 22 208-230 27-48 (193)
308 3clv_A RAB5 protein, putative; 77.9 1.1 3.8E-05 39.6 2.6 22 208-230 9-30 (208)
309 1aky_A Adenylate kinase; ATP:A 77.9 1.3 4.3E-05 41.3 3.2 24 205-229 3-26 (220)
310 2ewv_A Twitching motility prot 77.8 1.1 3.8E-05 46.2 3.0 28 203-231 133-160 (372)
311 3c5c_A RAS-like protein 12; GD 77.8 1.1 3.7E-05 40.4 2.6 23 208-231 23-45 (187)
312 2g6b_A RAS-related protein RAB 77.8 1.1 3.7E-05 39.3 2.5 23 208-231 12-34 (180)
313 2zej_A Dardarin, leucine-rich 77.7 0.9 3.1E-05 40.8 2.0 21 208-229 4-24 (184)
314 2a9k_A RAS-related protein RAL 77.7 1.1 3.8E-05 39.3 2.5 22 208-230 20-41 (187)
315 3bwd_D RAC-like GTP-binding pr 77.6 1.1 3.8E-05 39.3 2.5 22 208-230 10-31 (182)
316 2cxx_A Probable GTP-binding pr 77.6 0.95 3.2E-05 40.1 2.1 22 208-230 3-24 (190)
317 3t61_A Gluconokinase; PSI-biol 77.5 1.2 4E-05 40.9 2.8 23 207-230 19-41 (202)
318 1nks_A Adenylate kinase; therm 77.5 1.3 4.3E-05 39.6 2.9 22 208-230 3-24 (194)
319 1sxj_E Activator 1 40 kDa subu 77.4 1 3.5E-05 44.7 2.5 28 202-230 32-59 (354)
320 3co5_A Putative two-component 77.3 0.84 2.9E-05 40.1 1.6 18 206-223 27-44 (143)
321 2pt7_A CAG-ALFA; ATPase, prote 77.3 0.62 2.1E-05 47.3 0.9 28 201-229 166-193 (330)
322 2iwr_A Centaurin gamma 1; ANK 77.3 0.85 2.9E-05 40.1 1.7 22 208-230 9-30 (178)
323 1svi_A GTP-binding protein YSX 77.3 1 3.5E-05 40.2 2.2 23 207-230 24-46 (195)
324 4dkx_A RAS-related protein RAB 77.2 3.7 0.00013 38.9 6.2 21 208-229 15-35 (216)
325 2gf9_A RAS-related protein RAB 77.1 1.2 3.9E-05 40.0 2.5 23 208-231 24-46 (189)
326 2lkc_A Translation initiation 77.1 1.1 3.7E-05 39.2 2.3 24 206-230 8-31 (178)
327 2p5t_B PEZT; postsegregational 77.1 1.1 3.7E-05 43.2 2.5 27 202-229 28-54 (253)
328 2cdn_A Adenylate kinase; phosp 77.1 1.4 4.8E-05 40.3 3.1 24 205-229 19-42 (201)
329 1mh1_A RAC1; GTP-binding, GTPa 77.1 1.2 4E-05 39.2 2.6 22 208-230 7-28 (186)
330 3m6a_A ATP-dependent protease 77.1 1.2 4.1E-05 48.3 3.1 26 205-231 107-132 (543)
331 1hqc_A RUVB; extended AAA-ATPa 77.1 1.1 3.9E-05 43.7 2.7 24 207-231 39-62 (324)
332 1q3t_A Cytidylate kinase; nucl 77.0 1.4 4.7E-05 41.8 3.2 24 205-229 15-38 (236)
333 1ly1_A Polynucleotide kinase; 76.9 1.2 4.2E-05 39.3 2.7 21 208-229 4-24 (181)
334 1m7b_A RND3/RHOE small GTP-bin 76.7 1.2 4.2E-05 39.7 2.6 22 208-230 9-30 (184)
335 1z06_A RAS-related protein RAB 76.6 1.2 4.2E-05 39.8 2.6 22 208-230 22-43 (189)
336 2fg5_A RAB-22B, RAS-related pr 76.6 1.2 4.2E-05 40.1 2.6 23 208-231 25-47 (192)
337 3q72_A GTP-binding protein RAD 76.5 1 3.5E-05 38.9 1.9 20 208-228 4-23 (166)
338 2vp4_A Deoxynucleoside kinase; 76.5 1 3.5E-05 42.7 2.1 26 202-228 16-41 (230)
339 3tw8_B RAS-related protein RAB 76.5 0.8 2.7E-05 40.0 1.2 22 208-230 11-32 (181)
340 3t1o_A Gliding protein MGLA; G 76.3 1.4 4.7E-05 39.0 2.8 22 208-230 16-37 (198)
341 3t5g_A GTP-binding protein RHE 76.3 1.3 4.3E-05 39.1 2.5 22 208-230 8-29 (181)
342 3jvv_A Twitching mobility prot 76.2 1.4 4.7E-05 45.5 3.1 28 203-231 120-147 (356)
343 4fcw_A Chaperone protein CLPB; 76.2 1.3 4.3E-05 43.1 2.7 24 207-231 48-71 (311)
344 2dhr_A FTSH; AAA+ protein, hex 76.1 1.2 4.1E-05 48.1 2.7 25 204-231 64-88 (499)
345 3e70_C DPA, signal recognition 76.0 1.4 4.7E-05 45.0 3.0 27 203-230 126-152 (328)
346 1m7g_A Adenylylsulfate kinase; 76.0 1.6 5.3E-05 40.6 3.2 26 203-229 22-47 (211)
347 1zd9_A ADP-ribosylation factor 76.0 1.3 4.4E-05 39.8 2.5 22 208-230 24-45 (188)
348 2bjv_A PSP operon transcriptio 76.0 1.3 4.3E-05 42.5 2.6 25 206-231 29-53 (265)
349 1vg8_A RAS-related protein RAB 75.8 1.3 4.5E-05 39.9 2.5 23 208-231 10-32 (207)
350 3reg_A RHO-like small GTPase; 75.8 1.3 4.5E-05 39.7 2.5 23 208-231 25-47 (194)
351 1x3s_A RAS-related protein RAB 75.7 1.3 4.6E-05 39.2 2.5 23 208-231 17-39 (195)
352 1ega_A Protein (GTP-binding pr 75.7 1.1 3.6E-05 44.7 2.0 26 205-231 7-32 (301)
353 2atv_A RERG, RAS-like estrogen 75.7 1.4 4.7E-05 39.8 2.6 23 207-230 29-51 (196)
354 2a5j_A RAS-related protein RAB 75.7 1.3 4.5E-05 39.7 2.5 22 208-230 23-44 (191)
355 1m2o_B GTP-binding protein SAR 75.6 1.3 4.5E-05 40.1 2.5 23 207-230 24-46 (190)
356 2bov_A RAla, RAS-related prote 75.5 1.4 4.8E-05 39.6 2.7 22 208-230 16-37 (206)
357 1g8p_A Magnesium-chelatase 38 75.5 1.2 4.1E-05 44.0 2.3 25 206-231 45-69 (350)
358 1ukz_A Uridylate kinase; trans 75.5 1.6 5.6E-05 39.8 3.1 24 205-229 14-37 (203)
359 2qmh_A HPR kinase/phosphorylas 75.4 1.5 5.1E-05 42.3 2.9 21 205-225 33-53 (205)
360 3oes_A GTPase rhebl1; small GT 75.4 1.3 4.6E-05 40.1 2.5 24 207-231 25-48 (201)
361 3lxx_A GTPase IMAP family memb 75.2 1.2 4.1E-05 42.0 2.2 23 208-231 31-53 (239)
362 1g5t_A COB(I)alamin adenosyltr 75.2 7.5 0.00026 37.0 7.7 26 207-232 29-54 (196)
363 3e1s_A Exodeoxyribonuclease V, 75.1 2.2 7.6E-05 46.6 4.6 26 205-231 203-228 (574)
364 2p5s_A RAS and EF-hand domain 75.1 1.4 4.9E-05 39.8 2.6 22 208-230 30-51 (199)
365 1ni3_A YCHF GTPase, YCHF GTP-b 75.0 1.4 4.8E-05 46.2 2.8 31 200-231 14-44 (392)
366 1sxj_D Activator 1 41 kDa subu 75.0 1.5 5.3E-05 43.1 3.0 23 207-230 59-81 (353)
367 1ak2_A Adenylate kinase isoenz 75.0 1.7 5.8E-05 41.1 3.2 24 206-230 16-39 (233)
368 2cjw_A GTP-binding protein GEM 74.9 1.6 5.6E-05 39.6 3.0 22 208-230 8-29 (192)
369 2o52_A RAS-related protein RAB 74.8 1.3 4.5E-05 40.3 2.3 22 208-230 27-48 (200)
370 3r20_A Cytidylate kinase; stru 74.8 1.6 5.4E-05 42.5 3.0 21 208-229 11-31 (233)
371 1nrj_B SR-beta, signal recogni 74.7 1.5 5.1E-05 40.2 2.7 23 208-231 14-36 (218)
372 1j8m_F SRP54, signal recogniti 74.7 11 0.00036 37.7 9.1 23 205-228 97-119 (297)
373 2r44_A Uncharacterized protein 74.6 1.1 3.6E-05 44.5 1.7 26 205-231 45-70 (331)
374 2h17_A ADP-ribosylation factor 74.6 1.3 4.5E-05 39.4 2.2 22 208-230 23-44 (181)
375 4f4c_A Multidrug resistance pr 74.5 1.5 5.1E-05 52.7 3.2 30 198-228 1097-1126(1321)
376 1zak_A Adenylate kinase; ATP:A 74.5 1.7 5.7E-05 40.6 2.9 24 205-229 4-27 (222)
377 3hws_A ATP-dependent CLP prote 74.4 1.6 5.4E-05 44.1 3.0 25 206-231 51-75 (363)
378 3d8b_A Fidgetin-like protein 1 74.4 1.5 5.1E-05 44.6 2.8 25 206-231 117-141 (357)
379 2iw3_A Elongation factor 3A; a 74.3 1.1 3.6E-05 52.5 1.8 30 198-228 691-720 (986)
380 2fu5_C RAS-related protein RAB 74.3 1.1 3.7E-05 39.7 1.5 22 208-230 10-31 (183)
381 1gvn_B Zeta; postsegregational 74.2 1.8 6.2E-05 42.8 3.3 27 202-229 29-55 (287)
382 2pt5_A Shikimate kinase, SK; a 74.2 1.8 6.1E-05 38.1 2.9 21 208-229 2-22 (168)
383 1uf9_A TT1252 protein; P-loop, 74.2 1.7 6E-05 39.2 2.9 23 206-229 8-30 (203)
384 1zj6_A ADP-ribosylation factor 74.0 1.5 5E-05 39.2 2.3 23 207-230 17-39 (187)
385 1iqp_A RFCS; clamp loader, ext 73.9 1.8 6.2E-05 41.9 3.2 26 204-230 44-69 (327)
386 1ksh_A ARF-like protein 2; sma 73.9 1.2 4E-05 39.6 1.7 24 206-230 18-41 (186)
387 3tlx_A Adenylate kinase 2; str 73.8 1.8 6.3E-05 41.4 3.1 23 206-229 29-51 (243)
388 1tq4_A IIGP1, interferon-induc 73.8 1.1 3.9E-05 47.2 1.7 22 208-230 71-92 (413)
389 2ew1_A RAS-related protein RAB 73.7 1.6 5.5E-05 40.2 2.6 22 208-230 28-49 (201)
390 2bcg_Y Protein YP2, GTP-bindin 73.7 1.5 5.3E-05 39.7 2.4 23 208-231 10-32 (206)
391 2px0_A Flagellar biosynthesis 73.7 1.5 5.1E-05 43.9 2.6 25 204-229 103-127 (296)
392 2atx_A Small GTP binding prote 73.6 1.7 5.7E-05 39.0 2.6 22 208-230 20-41 (194)
393 4eaq_A DTMP kinase, thymidylat 73.5 1.9 6.6E-05 41.2 3.2 27 202-229 22-48 (229)
394 2pbr_A DTMP kinase, thymidylat 73.4 1.9 6.4E-05 38.5 2.9 21 208-229 2-22 (195)
395 4bas_A ADP-ribosylation factor 73.4 1.1 3.6E-05 40.2 1.2 23 208-231 19-41 (199)
396 2q3h_A RAS homolog gene family 73.4 1.5 5.2E-05 39.5 2.3 22 208-230 22-43 (201)
397 1e4v_A Adenylate kinase; trans 73.3 1.8 6.3E-05 40.1 2.9 21 208-229 2-22 (214)
398 1e6c_A Shikimate kinase; phosp 73.3 1.8 6.2E-05 38.1 2.8 21 208-229 4-24 (173)
399 2fh5_B SR-beta, signal recogni 73.2 1.7 5.9E-05 39.6 2.7 22 208-230 9-30 (214)
400 2gf0_A GTP-binding protein DI- 73.2 1.8 6.2E-05 38.6 2.8 23 207-230 9-31 (199)
401 3cph_A RAS-related protein SEC 73.1 1.7 5.7E-05 39.4 2.5 22 208-230 22-43 (213)
402 1tue_A Replication protein E1; 73.1 1.5 5.3E-05 42.5 2.4 25 205-230 57-81 (212)
403 2z0h_A DTMP kinase, thymidylat 72.9 1.9 6.4E-05 38.8 2.8 20 209-229 3-22 (197)
404 1sxj_C Activator 1 40 kDa subu 72.8 1.7 5.8E-05 43.4 2.7 21 209-230 49-69 (340)
405 1ex7_A Guanylate kinase; subst 72.8 1.8 6.3E-05 40.5 2.8 22 209-231 4-25 (186)
406 3tqf_A HPR(Ser) kinase; transf 72.7 1.8 6.2E-05 41.0 2.7 24 205-228 15-38 (181)
407 3k1j_A LON protease, ATP-depen 72.6 1.7 5.7E-05 47.6 2.8 28 202-230 56-83 (604)
408 3iby_A Ferrous iron transport 72.6 16 0.00054 35.3 9.5 22 208-230 3-24 (256)
409 3ozx_A RNAse L inhibitor; ATP 72.5 1.5 5.1E-05 47.7 2.4 28 200-228 19-46 (538)
410 2h57_A ADP-ribosylation factor 72.5 1.2 3.9E-05 40.0 1.3 22 208-230 23-44 (190)
411 2fv8_A H6, RHO-related GTP-bin 72.5 1.7 5.9E-05 39.6 2.5 22 208-230 27-48 (207)
412 3euj_A Chromosome partition pr 72.5 2.2 7.6E-05 46.0 3.7 29 199-229 23-51 (483)
413 3sr0_A Adenylate kinase; phosp 72.5 1.9 6.5E-05 40.9 2.8 21 208-229 2-22 (206)
414 2f7s_A C25KG, RAS-related prot 72.4 1.5 5E-05 40.2 2.0 22 208-230 27-48 (217)
415 2ze6_A Isopentenyl transferase 72.4 1.8 6.3E-05 41.8 2.8 21 209-230 4-24 (253)
416 4aby_A DNA repair protein RECN 72.3 0.85 2.9E-05 46.7 0.4 29 198-228 53-81 (415)
417 2qen_A Walker-type ATPase; unk 72.3 2 7E-05 41.8 3.1 24 206-230 31-54 (350)
418 2f1r_A Molybdopterin-guanine d 72.2 1.1 3.6E-05 41.5 0.9 23 207-230 3-25 (171)
419 1moz_A ARL1, ADP-ribosylation 72.2 1.4 4.8E-05 38.8 1.7 22 206-228 18-39 (183)
420 2oap_1 GSPE-2, type II secreti 71.9 1.4 4.9E-05 47.6 2.0 28 201-229 255-282 (511)
421 2gco_A H9, RHO-related GTP-bin 71.7 1.9 6.4E-05 39.2 2.5 22 208-230 27-48 (201)
422 1um8_A ATP-dependent CLP prote 71.7 2 6.7E-05 43.6 2.9 24 207-231 73-96 (376)
423 2il1_A RAB12; G-protein, GDP, 71.7 1.4 4.6E-05 39.9 1.5 21 208-229 28-48 (192)
424 1ypw_A Transitional endoplasmi 71.6 1.8 6E-05 49.4 2.8 28 203-231 235-262 (806)
425 2zan_A Vacuolar protein sortin 71.5 1.9 6.4E-05 45.4 2.8 24 207-231 168-191 (444)
426 2chq_A Replication factor C sm 71.4 2.1 7.3E-05 41.3 3.0 25 205-230 37-61 (319)
427 1gwn_A RHO-related GTP-binding 71.4 2 6.7E-05 39.7 2.6 22 208-230 30-51 (205)
428 1p9r_A General secretion pathw 71.3 2.1 7.2E-05 45.1 3.1 28 203-231 164-191 (418)
429 3q3j_B RHO-related GTP-binding 71.3 1.9 6.6E-05 39.9 2.5 22 208-230 29-50 (214)
430 2j1l_A RHO-related GTP-binding 71.2 1.8 6.1E-05 40.0 2.3 22 208-230 36-57 (214)
431 2c9o_A RUVB-like 1; hexameric 71.2 2.1 7.2E-05 45.0 3.1 26 206-232 63-88 (456)
432 1qf9_A UMP/CMP kinase, protein 71.1 2.4 8.3E-05 37.7 3.1 22 207-229 7-28 (194)
433 3vfd_A Spastin; ATPase, microt 71.0 2.2 7.4E-05 43.7 3.1 26 206-232 148-173 (389)
434 2j0v_A RAC-like GTP-binding pr 70.9 2 6.7E-05 39.1 2.5 22 208-230 11-32 (212)
435 3llu_A RAS-related GTP-binding 70.8 1.8 6E-05 39.2 2.1 22 208-230 22-43 (196)
436 3cbq_A GTP-binding protein REM 70.8 1.7 5.8E-05 39.7 2.0 16 208-223 25-40 (195)
437 1uj2_A Uridine-cytidine kinase 70.7 2.3 7.7E-05 40.8 3.0 21 208-229 24-44 (252)
438 4gzl_A RAS-related C3 botulinu 70.4 2 7E-05 39.2 2.5 23 207-230 31-53 (204)
439 1fzq_A ADP-ribosylation factor 70.3 1.7 6E-05 38.8 1.9 20 208-228 18-37 (181)
440 3tqc_A Pantothenate kinase; bi 69.9 2.2 7.5E-05 43.5 2.8 21 208-229 94-114 (321)
441 3ake_A Cytidylate kinase; CMP 69.6 2.6 8.8E-05 38.2 3.0 21 208-229 4-24 (208)
442 2qu8_A Putative nucleolar GTP- 69.5 1.8 6.3E-05 40.3 2.0 22 208-230 31-52 (228)
443 2xtp_A GTPase IMAP family memb 69.4 1.9 6.6E-05 41.1 2.1 24 207-231 23-46 (260)
444 3j16_B RLI1P; ribosome recycli 69.3 2.2 7.6E-05 47.2 2.8 29 200-229 367-400 (608)
445 2hf9_A Probable hydrogenase ni 68.9 2.6 9E-05 38.8 2.9 23 207-230 39-61 (226)
446 2grj_A Dephospho-COA kinase; T 68.6 2.7 9.4E-05 39.3 3.0 21 208-229 14-34 (192)
447 1sxj_B Activator 1 37 kDa subu 68.5 2.7 9.2E-05 40.6 3.0 25 205-230 41-65 (323)
448 1f2t_A RAD50 ABC-ATPase; DNA d 68.3 2.3 8E-05 37.9 2.3 20 208-228 25-44 (149)
449 1f6b_A SAR1; gtpases, N-termin 68.2 1.9 6.4E-05 39.4 1.7 20 208-228 27-46 (198)
450 2yc2_C IFT27, small RAB-relate 68.2 1.4 4.6E-05 39.6 0.7 22 208-230 22-43 (208)
451 3nbx_X ATPase RAVA; AAA+ ATPas 68.1 1.9 6.6E-05 46.5 2.0 27 203-230 38-64 (500)
452 3g5u_A MCG1178, multidrug resi 68.0 2.3 7.9E-05 50.9 2.9 29 199-228 1052-1080(1284)
453 2fna_A Conserved hypothetical 68.0 2.6 8.8E-05 41.1 2.7 24 207-231 31-54 (357)
454 3cpj_B GTP-binding protein YPT 67.9 2.6 8.8E-05 39.0 2.6 22 208-230 15-36 (223)
455 3g5u_A MCG1178, multidrug resi 67.9 2.4 8.3E-05 50.7 3.0 30 198-228 408-437 (1284)
456 2qnr_A Septin-2, protein NEDD5 67.9 2.3 7.9E-05 42.4 2.4 20 209-229 21-40 (301)
457 3gmt_A Adenylate kinase; ssgci 67.8 2.7 9.2E-05 41.0 2.8 21 208-229 10-30 (230)
458 3k53_A Ferrous iron transport 67.6 2.4 8.1E-05 41.1 2.4 22 208-230 5-26 (271)
459 3pxg_A Negative regulator of g 67.6 2.9 0.0001 44.2 3.3 25 206-231 201-225 (468)
460 3p32_A Probable GTPase RV1496/ 67.4 8.4 0.00029 39.0 6.5 25 204-229 77-101 (355)
461 3a4m_A L-seryl-tRNA(SEC) kinas 67.3 3.1 0.00011 40.2 3.1 24 205-229 3-26 (260)
462 1ojl_A Transcriptional regulat 67.2 2.7 9.2E-05 41.8 2.8 25 206-231 25-49 (304)
463 2ffh_A Protein (FFH); SRP54, s 67.2 17 0.00059 38.3 9.1 23 205-228 97-119 (425)
464 1jal_A YCHF protein; nucleotid 67.1 3.3 0.00011 43.0 3.4 25 206-231 2-26 (363)
465 2b6h_A ADP-ribosylation factor 67.0 2.2 7.6E-05 38.6 1.9 21 207-228 30-50 (192)
466 2p67_A LAO/AO transport system 66.9 3 0.0001 42.1 3.1 28 201-229 51-78 (341)
467 2xb4_A Adenylate kinase; ATP-b 66.7 3.1 0.00011 39.1 2.9 21 208-229 2-22 (223)
468 2ohf_A Protein OLA1, GTP-bindi 66.7 2.4 8.1E-05 44.6 2.3 28 202-230 18-45 (396)
469 1vht_A Dephospho-COA kinase; s 66.5 3.2 0.00011 38.4 3.0 22 206-228 4-25 (218)
470 1sxj_A Activator 1 95 kDa subu 66.5 3.1 0.0001 44.5 3.2 25 206-231 77-101 (516)
471 2xxa_A Signal recognition part 66.3 9.8 0.00033 40.2 7.0 18 207-224 101-118 (433)
472 4djt_A GTP-binding nuclear pro 66.3 2.4 8.1E-05 38.8 2.0 20 208-228 13-32 (218)
473 3cr8_A Sulfate adenylyltranfer 66.1 2.3 7.7E-05 46.6 2.1 28 202-230 365-392 (552)
474 2x77_A ADP-ribosylation factor 65.9 2.2 7.7E-05 37.9 1.7 21 207-228 23-43 (189)
475 2g3y_A GTP-binding protein GEM 65.8 2.4 8.3E-05 39.9 2.0 20 208-228 39-58 (211)
476 1ko7_A HPR kinase/phosphatase; 65.7 3.7 0.00013 41.9 3.5 24 205-228 143-166 (314)
477 2www_A Methylmalonic aciduria 65.7 3.2 0.00011 42.3 3.0 24 206-230 74-97 (349)
478 4f4c_A Multidrug resistance pr 65.6 2.8 9.5E-05 50.4 2.9 31 198-229 436-466 (1321)
479 3gj0_A GTP-binding nuclear pro 65.4 2.5 8.4E-05 38.9 1.9 18 208-226 17-34 (221)
480 3zvl_A Bifunctional polynucleo 65.3 14 0.00048 38.3 7.9 22 206-228 258-279 (416)
481 3umf_A Adenylate kinase; rossm 65.3 3.2 0.00011 39.8 2.7 21 209-230 32-52 (217)
482 3qf7_A RAD50; ABC-ATPase, ATPa 65.2 3.8 0.00013 42.0 3.5 25 202-228 20-44 (365)
483 4b3f_X DNA-binding protein smu 65.0 2.8 9.7E-05 46.1 2.6 21 208-228 207-227 (646)
484 2ga8_A Hypothetical 39.9 kDa p 65.0 3.4 0.00012 43.0 3.0 27 204-231 20-48 (359)
485 1a5t_A Delta prime, HOLB; zinc 64.8 23 0.0008 35.2 9.2 21 209-230 27-47 (334)
486 1w1w_A Structural maintenance 64.6 3.7 0.00013 42.7 3.3 26 203-229 23-48 (430)
487 3hu3_A Transitional endoplasmi 64.4 3.2 0.00011 44.6 2.8 24 207-231 239-262 (489)
488 1wf3_A GTP-binding protein; GT 64.3 2.7 9.2E-05 41.9 2.1 24 207-231 8-31 (301)
489 4akg_A Glutathione S-transfera 64.0 7.5 0.00026 50.1 6.4 22 204-225 1265-1286(2695)
490 2j37_W Signal recognition part 64.0 19 0.00065 38.9 8.8 23 206-229 101-123 (504)
491 2aka_B Dynamin-1; fusion prote 63.5 2.9 9.9E-05 40.3 2.1 24 207-231 27-50 (299)
492 1ypw_A Transitional endoplasmi 63.4 2.8 9.6E-05 47.7 2.3 29 203-232 508-536 (806)
493 1a7j_A Phosphoribulokinase; tr 63.4 3.2 0.00011 41.2 2.4 23 206-229 5-27 (290)
494 2wsm_A Hydrogenase expression/ 63.3 3.9 0.00013 37.4 2.9 23 207-230 31-53 (221)
495 1gtv_A TMK, thymidylate kinase 62.9 2 6.7E-05 39.3 0.7 21 209-230 3-23 (214)
496 3th5_A RAS-related C3 botulinu 66.8 1.6 5.3E-05 39.7 0.0 24 205-229 29-52 (204)
497 2olr_A Phosphoenolpyruvate car 62.6 4.5 0.00015 44.3 3.6 19 205-223 240-258 (540)
498 1np6_A Molybdopterin-guanine d 62.4 4.3 0.00015 37.4 3.0 22 208-230 8-29 (174)
499 1u0j_A DNA replication protein 62.1 4.5 0.00015 40.4 3.2 22 208-230 106-127 (267)
500 4dhe_A Probable GTP-binding pr 61.5 1.6 5.5E-05 40.0 -0.2 23 207-230 30-52 (223)
No 1
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=6.8e-107 Score=872.47 Aligned_cols=382 Identities=53% Similarity=0.774 Sum_probs=335.5
Q ss_pred CCChHHHHHHHHHHHhcCcchhhhhhhhcccccccCceeeecCCe----eEEccchhhhhcccccccCCeEEEEEecccc
Q psy13776 40 SSRAAEISSILEERILGSAPKAVAYRQMSLLLRRPPGREAYPGDV----FYLHSRLLERSAKMSEAHGGGSLTALPVIET 115 (539)
Q Consensus 40 ~~~~~ei~~~l~~~i~~~~~~~~~~~ei~g~~~e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~ 115 (539)
+++++||+++++++|.+|++.+.. ++.|++.+|+++ +|+.++ .++|++.|+++..|+|+++++
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~~---------~~~G~V~~v~g~i~~v~Gl~~~---~~gElv~~~~~~~g~v~~l~~- 68 (513)
T 3oaa_A 2 QLNSTEISELIKQRIAQFNVVSEA---------HNEGTIVSVSDGVIRIHGLADC---MQGEMISLPGNRYAIALNLER- 68 (513)
T ss_dssp ----------------------CC---------TTEEEEEEEETTEEEEEECTTC---BTTCEEEETTTEEEEEEEECS-
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCc---------eeEEEEEEEECcEEEEECCccC---CcCCEEEECCCCEEEEEEeeC-
Confidence 567899999999999999988877 889999999999 677777 999999999999999999999
Q ss_pred CCCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccc
Q psy13776 116 QAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLL 190 (539)
Q Consensus 116 ~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl 190 (539)
|++++++|+++.|+++|++|++||++++||||++|||||+ +|+||||++++..+...+ .+|++..|.++++||
T Consensus 69 --d~v~~~~~~~~~gi~~G~~V~~tg~~~~VpvG~~lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epl 146 (513)
T 3oaa_A 69 --DSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPV 146 (513)
T ss_dssp --SCEEEEESSCCSSCCTTCEEECCSCSSEEECSGGGTTCEEETTSCBTTCSCSCCCSCEEESSCCCCCSSSCCCCCCBC
T ss_pred --CEEEEEEeCCccCCCCCCEEEEcCCCCeEeeCHHHhccchhhcCcCccCCCCCCccceeecccCCCCccccCCcCccc
Confidence 9999999999999999999999999999999999999999 999999999987665432 234444454559999
Q ss_pred cccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhH
Q psy13776 191 SAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQ 270 (539)
Q Consensus 191 ~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~ 270 (539)
+||||+||+|+|||||||++|||++|||||+|++++|+||+..
T Consensus 147 ~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~------------------------------------- 189 (513)
T 3oaa_A 147 QTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDS------------------------------------- 189 (513)
T ss_dssp CCSCHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTSSS-------------------------------------
T ss_pred ccceeeeccccccccCCEEEeecCCCCCcchHHHHHHHhhccC-------------------------------------
Confidence 9999999999999999999999999999999999999998643
Q ss_pred HHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEE
Q psy13776 271 AVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALII 350 (539)
Q Consensus 271 a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli 350 (539)
+++|||++||||++||++|+++++++|+|+||++|++|+|+||.+|+++||+|||+||||||+|+|||++
T Consensus 190 ----------dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli 259 (513)
T 3oaa_A 190 ----------GIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALII 259 (513)
T ss_dssp ----------SCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------CceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCC----------CC-CccceeeeEEEeeCCCcCC
Q psy13776 351 YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEA----------HG-GGSLTALPVIETQAGDVSA 419 (539)
Q Consensus 351 ~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~----------~g-~GSITal~~v~~~~~D~s~ 419 (539)
|||+||||+||||||+++||||+++|||||+||+||||+||||++++. .| +||||+||+|++|+||++|
T Consensus 260 ~Dsltr~A~A~REisl~lgepP~r~gYP~~vf~~~srLlERAg~~~~~~~~~~~~~~~~g~~GSITal~~V~~~~dD~s~ 339 (513)
T 3oaa_A 260 YDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSA 339 (513)
T ss_dssp EETHHHHHHHHHHHHHHTTCCBCTTSCBTTHHHHHHHHHTTCSEECHHHHHHHHTTSCCSCCEEEEECCEEECGGGCCSS
T ss_pred ecChHHHHHHHHHHHHhcCCCCcccCCCchhhhhcchHHHHHhhcccccchhccccccCCCCcceEEEEEEEcCCCCccC
Confidence 999999999999999999999999999999999999999999998632 35 8999999999999999999
Q ss_pred ccccccccccceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 420 YIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 420 pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
|||||++|||||||||||+||++| +||||
T Consensus 340 pIp~~~~si~DGqIvLsr~La~~g---------------------------------------------------iyPAI 368 (513)
T 3oaa_A 340 FVPTNVISITDGQIFLETNLFNAG---------------------------------------------------IRPAV 368 (513)
T ss_dssp HHHHHHHHHSSEEEEECHHHHTTS---------------------------------------------------CCSCB
T ss_pred cchHhhhccCCeEEEEehhHHhCC---------------------------------------------------CCCcc
Confidence 999999999999999999999999 79999
Q ss_pred cccccccccCchhhhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 500 NVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 500 ~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
|++.|+||+|+++|+++| +.+.++|+ +|+.|+|+.
T Consensus 369 dvl~SvSRv~~~~~~~~~~~va~~lr~---~la~y~el~ 404 (513)
T 3oaa_A 369 NPGISVSRVGGAAQTKIMKKLSGGIRT---ALAQYRELA 404 (513)
T ss_dssp CTTTCEESSGGGGSCHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CccccccccCcccccHHHHHHHHHHHH---HHHHHHHHH
Confidence 999999999999999999 45666777 899999873
No 2
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=1e-103 Score=849.14 Aligned_cols=382 Identities=54% Similarity=0.802 Sum_probs=333.5
Q ss_pred CCChHHHHHHHHHHHhcCcchhhhhhhhcccccccCceeeecCCe----eEEccchhhhhcccccccCCeEEEEEecccc
Q psy13776 40 SSRAAEISSILEERILGSAPKAVAYRQMSLLLRRPPGREAYPGDV----FYLHSRLLERSAKMSEAHGGGSLTALPVIET 115 (539)
Q Consensus 40 ~~~~~ei~~~l~~~i~~~~~~~~~~~ei~g~~~e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~ 115 (539)
+++++|++++++++|++|+..++. +..|.+.+|+++ .|++++ .++|++.|+++..|+|+++++
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~~---------~~~G~V~~v~g~iv~v~gl~~~---~~ge~~~i~~g~~g~v~~l~~- 68 (502)
T 2qe7_A 2 SIRPEEISALIKKQIENYEADLEV---------VEVGTVIQVGDGIARVHGLEKV---MAGELLEFENGVMGMAQNLEE- 68 (502)
T ss_dssp ----------------------------------CEEEEEEEETTEEEEECCTTC---BTTEEEEETTSCEEEEEEEET-
T ss_pred CCCHHHHHHHHHHHHHhcCCCcce---------eEEEEEEEecCcEEEEEECCCC---CCCCEEEECCCCEEEEEEecC-
Confidence 457889999999999999998887 789999999998 566666 899999998777899999999
Q ss_pred CCCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccc
Q psy13776 116 QAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLL 190 (539)
Q Consensus 116 ~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl 190 (539)
|++++++|+++.|+++|+.|++||++++||||++|||||+ +|+||||++++.....++ .+|++..|.++++||
T Consensus 69 --~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl 146 (502)
T 2qe7_A 69 --DNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPL 146 (502)
T ss_dssp --TEEEEEECSCCSSCCTTCEEEEEEEESEEECSGGGTTCEECTTCCBSSCSCCCCCCCEEESSCCCCCTTSBCCCCSBC
T ss_pred --CeEEEEEecCccCCcCCCEEEEeCCcceEEcccccceEEEccCCCCCCCCCCCCCCceeeccCCCCCcccccCCCCcc
Confidence 9999999999999999999999999999999999999999 999999999987654332 234444454559999
Q ss_pred cccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhH
Q psy13776 191 SAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQ 270 (539)
Q Consensus 191 ~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~ 270 (539)
+||||+||+|+|||||||++|||++|+|||+|++++|+||+..
T Consensus 147 ~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~------------------------------------- 189 (502)
T 2qe7_A 147 QTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKGQ------------------------------------- 189 (502)
T ss_dssp CCSCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGSC-------------------------------------
T ss_pred ccceeecccccccccCCEEEEECCCCCCchHHHHHHHHHhhcC-------------------------------------
Confidence 9999999999999999999999999999999999999999742
Q ss_pred HHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEE
Q psy13776 271 AVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALII 350 (539)
Q Consensus 271 a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli 350 (539)
+++|||++||||++||++|+++++++++|+||++|++|+|+||.+|+++||+|||+||||||+|+|||++
T Consensus 190 ----------dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~ 259 (502)
T 2qe7_A 190 ----------DVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVV 259 (502)
T ss_dssp ----------SEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred ----------CcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccc
Q psy13776 351 YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD 430 (539)
Q Consensus 351 ~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitD 430 (539)
|||+||||+||||||+++||||+++||||++||+|+||+||||++++..++||||++|+|++|+||++||||||++||||
T Consensus 260 ~Dsltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~~~~~~~~GSITal~~v~~~~dD~s~pI~~~~~si~D 339 (502)
T 2qe7_A 260 YDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGSLTALPFIETQAGDVSAYIPTNVISITD 339 (502)
T ss_dssp EECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCBBCTTTTCCEEEEEEEEECSTTCCSSHHHHHHHTTSS
T ss_pred EecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhcccccCCCcceeEEEEEEccCCCcccchhHHHhhhcC
Confidence 99999999999999999999999999999999999999999999987657899999999999999999999999999999
Q ss_pred eeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCc
Q psy13776 431 GQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGS 510 (539)
Q Consensus 431 GqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~ 510 (539)
|||||||+||++| +|||||++.|+||+|+
T Consensus 340 gqI~Lsr~La~~g---------------------------------------------------~~PAIdvl~S~SRv~~ 368 (502)
T 2qe7_A 340 GQIFLESDLFYSG---------------------------------------------------VRPAVNVGISVSRVGG 368 (502)
T ss_dssp EEEEECHHHHTTT---------------------------------------------------CSSCBCTTTCEESSGG
T ss_pred cEEEEehhHhhCC---------------------------------------------------CCceeCcccccccCCC
Confidence 9999999999999 7999999999999999
Q ss_pred hhhhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 511 AAQTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 511 ~~~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
+++.++| +.+.++|+ .|+.|+++.
T Consensus 369 ~~~~~~~~~~a~~lr~---~la~y~el~ 393 (502)
T 2qe7_A 369 AAQIKAMKKVAGTLRL---DLAQYRELQ 393 (502)
T ss_dssp GGSCHHHHHHHHHHHH---HHHHHHHGG
T ss_pred ccCCHHHHHHHHHHHH---HHhhhHHHH
Confidence 9999999 55677777 899999874
No 3
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1e-103 Score=849.86 Aligned_cols=382 Identities=52% Similarity=0.799 Sum_probs=342.3
Q ss_pred CCChHHHHHHHHHHHhcCcchhhhhhhhcccccccCceeeecCCe----eEEccchhhhhcccccc-cCCeEEEEEeccc
Q psy13776 40 SSRAAEISSILEERILGSAPKAVAYRQMSLLLRRPPGREAYPGDV----FYLHSRLLERSAKMSEA-HGGGSLTALPVIE 114 (539)
Q Consensus 40 ~~~~~ei~~~l~~~i~~~~~~~~~~~ei~g~~~e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f-~~g~~G~vl~l~~ 114 (539)
.++++|++++++++|++|+..++. +..|.+.+|+++ .|++++ .++|++.| +++..|+|+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~G~V~~V~g~iv~v~gl~~~---~~gEl~~i~~~g~~g~v~~l~~ 81 (515)
T 2r9v_A 14 RINPGEITKVLEEKIKSFEEKIDL---------EDTGKVIQVGDGIARAYGLNKV---MVSELVEFVETGVKGVAFNLEE 81 (515)
T ss_dssp ---------------CTTCCCSCT---------TTEEEEEEEETTEEEEEECTTC---CTTEEEEETTTCCEEEEEECCT
T ss_pred ccCHHHHHHHHHHHHHhcCCCCcc---------eeeeEEEEEECcEEEEecCCCC---CCCCEEEEecCCeEEEEEEecC
Confidence 678999999999999999999887 789999999998 677777 89999999 6667899999999
Q ss_pred cCCCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhcc---cccccccccccccc
Q psy13776 115 TQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNL 189 (539)
Q Consensus 115 ~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~ep 189 (539)
|++++++|+++.|+++|+.|++||++++||||++|||||+ +|+|+||++++.....++ .+|++..|.++++|
T Consensus 82 ---~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~P~~~~R~~v~ep 158 (515)
T 2r9v_A 82 ---DNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTP 158 (515)
T ss_dssp ---TCEEEEEESCCTTCCTTCEEEEEEEECEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESCCCCCCGGGBCCCCSE
T ss_pred ---CeEEEEEecCcccccCCCEEEEeCCcceeecCccceeeEEcCCCCCcCCCCCCCccceeecccCCCCcccccCCCcc
Confidence 9999999999999999999999999999999999999999 999999999987654332 23444455555999
Q ss_pred ccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhh
Q psy13776 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSK 269 (539)
Q Consensus 190 l~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~ 269 (539)
|+||||+||+|+|||||||++|||++|+|||+|++++|+||+..
T Consensus 159 l~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~------------------------------------ 202 (515)
T 2r9v_A 159 LQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQ------------------------------------ 202 (515)
T ss_dssp ECCSCHHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTTT------------------------------------
T ss_pred hhcCccccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhcC------------------------------------
Confidence 99999999999999999999999999999999999999999743
Q ss_pred HHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEE
Q psy13776 270 QAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALI 349 (539)
Q Consensus 270 ~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLl 349 (539)
+++|||++||||++||++|+++++++++|+||+||++|+|+||.+|+++||+|||+||||||+|+|||+
T Consensus 203 -----------dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl 271 (515)
T 2r9v_A 203 -----------GVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALV 271 (515)
T ss_dssp -----------TEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred -----------CcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCcccccccccc
Q psy13776 350 IYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429 (539)
Q Consensus 350 i~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sit 429 (539)
+|||+||||+||||||+++||||+++||||++||+|+||+||||++++..++||||+||+|++|+||++||||||++|||
T Consensus 272 i~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLlERAg~~~~~~~~GSITal~~v~~~~~D~s~pI~~~~~si~ 351 (515)
T 2r9v_A 272 VYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLNDKLGGGSLTALPIVETQANDISAYIPTNVISIT 351 (515)
T ss_dssp EEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHHTTCEEBCTTTTSCEEEEEEEEEESTTCTTSHHHHHHHHTS
T ss_pred EeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHHHHHhhccccCCCcceEEeeeeeccCCCccccchhhhcccc
Confidence 99999999999999999999999999999999999999999999998766789999999999999999999999999999
Q ss_pred ceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccC
Q psy13776 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVG 509 (539)
Q Consensus 430 DGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~ 509 (539)
||||||||+||++| +|||||++.|+||+|
T Consensus 352 DGqI~Lsr~La~~g---------------------------------------------------~yPAIdvl~SvSRv~ 380 (515)
T 2r9v_A 352 DGQIYLEPGLFYAG---------------------------------------------------QRPAINVGLSVSRVG 380 (515)
T ss_dssp SEEEEBCHHHHHHT---------------------------------------------------CSSCBCTTTCEEGGG
T ss_pred ceEEEEchHHHhCC---------------------------------------------------CCCeeccccccccCC
Confidence 99999999999999 799999999999999
Q ss_pred chhhhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 510 SAAQTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 510 ~~~~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
+++|+++| +.+.++|+ +|+.|+|+.
T Consensus 381 ~~~~~~~~~~~a~~lr~---~la~y~el~ 406 (515)
T 2r9v_A 381 GSAQIKAMKQVAGMLRI---DLAQYRELE 406 (515)
T ss_dssp TTTSCHHHHHHHHHHHH---HHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH---HHhhhhHHH
Confidence 99999999 55667788 889998864
No 4
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=8.7e-104 Score=851.05 Aligned_cols=390 Identities=65% Similarity=0.910 Sum_probs=338.4
Q ss_pred CCChHHHHHHHHHHHhcCcchhhhhhhhcccccccCceeeecCCe----eEEccchhhhhcccccccCCeEEEEEecccc
Q psy13776 40 SSRAAEISSILEERILGSAPKAVAYRQMSLLLRRPPGREAYPGDV----FYLHSRLLERSAKMSEAHGGGSLTALPVIET 115 (539)
Q Consensus 40 ~~~~~ei~~~l~~~i~~~~~~~~~~~ei~g~~~e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~ 115 (539)
+++++|++++++++|++|+.+++. +..|.+.+|+++ .|++++ .++|++.|+++..|+|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~G~V~~v~g~iv~v~gl~~~---~~ge~~~i~~g~~g~v~~l~~- 68 (510)
T 2ck3_A 2 KTGTAEVSSILEERILGADTSVDL---------EETGRVLSIGDGIARVHGLRNV---QAEEMVEFSSGLKGMSLNLEP- 68 (510)
T ss_dssp ----------------------CC---------SSEEEEEEEETTEEEEEECTTC---BTTCEEEETTSCEEEEEEECS-
T ss_pred CCCHHHHHHHHHHHHHhcCCCcce---------eEEeEEEEEECcEEEEeeCCCC---CCCCEEEECCCCeEEEEeccC-
Confidence 467899999999999999998887 789999999998 677777 899999998777899999999
Q ss_pred CCCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccc
Q psy13776 116 QAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLL 190 (539)
Q Consensus 116 ~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl 190 (539)
|++++++|+++.||++|+.|++||++++||||++|||||+ +|+||||++++......+ .+|++..|.++++||
T Consensus 69 --~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl 146 (510)
T 2ck3_A 69 --DNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPM 146 (510)
T ss_dssp --SCEEEEESSCGGGCCTTCEEEECCCCCEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBC
T ss_pred --CeEEEEEECCcccccCCCEEEEeCCcceeecCccceeeEEccCCcCcCCCCCCCccceeecccCCCCcccccccCccc
Confidence 9999999999999999999999999999999999999999 999999999987554332 234444455559999
Q ss_pred cccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhH
Q psy13776 191 SAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQ 270 (539)
Q Consensus 191 ~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~ 270 (539)
+||||+||+|+|||||||++|||++|+|||+|++++|+||+..+ .
T Consensus 147 ~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~----------~------------------------- 191 (510)
T 2ck3_A 147 QTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN----------D------------------------- 191 (510)
T ss_dssp CCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHH----------T-------------------------
T ss_pred cccceeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhc----------c-------------------------
Confidence 99999999999999999999999999999999999999998631 0
Q ss_pred HHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEE
Q psy13776 271 AVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALII 350 (539)
Q Consensus 271 a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli 350 (539)
.++++++++|||++||||++||++|+++++++++|+||+||++|+|+||.+|+++||+|||+||||||+|+|||++
T Consensus 192 ----~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli 267 (510)
T 2ck3_A 192 ----GTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALII 267 (510)
T ss_dssp ----SCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred ----ccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 0112346899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccc
Q psy13776 351 YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD 430 (539)
Q Consensus 351 ~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitD 430 (539)
||||||||+||||||+++||||+++||||++||+|+||+||||++++..++||||+||+|++|+||++||||||++||||
T Consensus 268 ~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLlERAg~~~~~~~~GSITal~~v~~~~dD~s~pI~~~~~si~D 347 (510)
T 2ck3_A 268 YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITD 347 (510)
T ss_dssp EETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHHTTCEEBCGGGTSCEEEEEEEEECSTTCTTSHHHHHHHHHSS
T ss_pred EcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHHHhhhcccccCCCcceeEeeeeccCCCCccccchHhhhcccc
Confidence 99999999999999999999999999999999999999999999976557899999999999999999999999999999
Q ss_pred eeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCc
Q psy13776 431 GQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGS 510 (539)
Q Consensus 431 GqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~ 510 (539)
|||||||+||++| +|||||++.|+||+|+
T Consensus 348 gqI~Lsr~La~~g---------------------------------------------------i~PAIdvl~SvSRv~~ 376 (510)
T 2ck3_A 348 GQIFLETELFYKG---------------------------------------------------IRPAINVGLSVSRVGS 376 (510)
T ss_dssp EEEEBCHHHHHHT---------------------------------------------------CSSCBCTTTCEESSGG
T ss_pred eEEEEehhHhhCC---------------------------------------------------CCCcccchhccccccc
Confidence 9999999999999 7999999999999999
Q ss_pred hhhhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 511 AAQTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 511 ~~~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
++|.++| +.+.++|+ .|+.|+++.
T Consensus 377 ~~~~~~~~~~a~~lr~---~la~y~el~ 401 (510)
T 2ck3_A 377 AAQTRAMKQVAGTMKL---ELAQYREVA 401 (510)
T ss_dssp GGSCHHHHHHHHHHHH---HHHHHHHHG
T ss_pred ccCCHHHHHHHHHHHH---HHHhhhHHH
Confidence 9999999 55667787 899998864
No 5
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=1.1e-103 Score=849.63 Aligned_cols=382 Identities=52% Similarity=0.757 Sum_probs=336.2
Q ss_pred CCChHHHHHHHHHHHhcCcchhhhhhhhcccccccCceeeecCCe----eEEccchhhhhcccccccCCeEEEEEecccc
Q psy13776 40 SSRAAEISSILEERILGSAPKAVAYRQMSLLLRRPPGREAYPGDV----FYLHSRLLERSAKMSEAHGGGSLTALPVIET 115 (539)
Q Consensus 40 ~~~~~ei~~~l~~~i~~~~~~~~~~~ei~g~~~e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~ 115 (539)
+++++|++++++++|++|+..++. +..|.+.+|+++ .|++++ .++|++.|+++..|+|+++++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~~~---------~~~G~V~~v~g~iv~v~gl~~~---~~ge~~~i~~g~~g~v~~l~~- 69 (507)
T 1fx0_A 3 TIRADEISKIIRERIEGYNREVKV---------VNTGTVLQVGDGIARIHGLDEV---MAGELVEFEEGTIGIALNLES- 69 (507)
T ss_dssp ----------------------CT---------TTEEEECCCCSSEEEEEECTTC---CTTCCEEETTCCEEEEEEECS-
T ss_pred CCCHHHHHHHHHHHHHhccCCcce---------eEEEEEEEEeCCEEEEEECCCc---cCCCEEEECCCceEEEEeccC-
Confidence 567899999999999999998887 789999999998 677777 899999998777899999999
Q ss_pred CCCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccc
Q psy13776 116 QAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLL 190 (539)
Q Consensus 116 ~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl 190 (539)
|++++++|+++.|+++|+.|++||++++||||++|||||+ +|+||||++++......+ .+|++..|.++++||
T Consensus 70 --~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl 147 (507)
T 1fx0_A 70 --NNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPL 147 (507)
T ss_dssp --SEEEEEECSCGGGCCTTCEEECCCCCCEEEESSSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBC
T ss_pred --CeEEEEEecCccCCcCCCEEEEeCCcceeecCccceeEEEccCCcCCCCCCCCCCCceeeccCCCCCcccccccCCcc
Confidence 9999999999999999999999999999999999999999 999999999987654332 234444555559999
Q ss_pred cccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhH
Q psy13776 191 SAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQ 270 (539)
Q Consensus 191 ~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~ 270 (539)
+||||+||+|+|||||||++|||++|+|||+|++++|+||+..
T Consensus 148 ~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~------------------------------------- 190 (507)
T 1fx0_A 148 QTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQ------------------------------------- 190 (507)
T ss_dssp CCSCTTTTTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTT-------------------------------------
T ss_pred cccceecccccccccCCEEEEecCCCCCccHHHHHHHHHhhcC-------------------------------------
Confidence 9999999999999999999999999999999999999998743
Q ss_pred HHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEE
Q psy13776 271 AVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALII 350 (539)
Q Consensus 271 a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli 350 (539)
+++|||++||||++||++|+++++++++|+||++|++|+|+||.+|+++||+|||+||||||+|+|||++
T Consensus 191 ----------dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli 260 (507)
T 1fx0_A 191 ----------NVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLII 260 (507)
T ss_dssp ----------TCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------CcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccc
Q psy13776 351 YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITD 430 (539)
Q Consensus 351 ~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitD 430 (539)
|||+||||+||||||+++||||+++||||++||+|+||+||||++++..++||||++|+|++|+||++||||||++||||
T Consensus 261 ~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~~~~~~~~GSITal~~v~~~~~D~s~pI~~~~~si~D 340 (507)
T 1fx0_A 261 YDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDVSAYIPTNVISITD 340 (507)
T ss_dssp EECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCBBCTTTTSCEEEECCEEECSTTCTTSHHHHHHHTTSS
T ss_pred EecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhhccccCCCcceeeeeeeeccCCCcccchHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999987657899999999999999999999999999999
Q ss_pred eeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCc
Q psy13776 431 GQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGS 510 (539)
Q Consensus 431 GqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~ 510 (539)
|||||||+||++| +|||||++.|+||+|+
T Consensus 341 gqIvLsr~La~~g---------------------------------------------------~yPAIdvl~S~SR~~~ 369 (507)
T 1fx0_A 341 GQIFLSADLFNAG---------------------------------------------------IRPAINVGISVSRVGS 369 (507)
T ss_dssp CBCCCCSSSSSSS---------------------------------------------------CSSCCCTTTCCCTTGG
T ss_pred cEEEEehhHhhCC---------------------------------------------------CCCccchhhhhccccc
Confidence 9999999999999 7999999999999999
Q ss_pred hhhhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 511 AAQTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 511 ~~~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
+++.++| +.+.++|+ +|+.|+++.
T Consensus 370 ~~~~~~~~~~a~~lr~---~la~y~el~ 394 (507)
T 1fx0_A 370 AAQIKAMKKVAGKLKL---ELAQFAELE 394 (507)
T ss_dssp GGSCHHHHHHHHHHHH---HHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHH---HHHhhhHHH
Confidence 9999999 55667888 889998864
No 6
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=7.3e-95 Score=773.56 Aligned_cols=368 Identities=19% Similarity=0.267 Sum_probs=324.8
Q ss_pred ccccCceeeecCCe----eEEccchhhhhcccccc--cCCe--EEEEEeccccCCCcEEEEcccCCcCCC-CCCEEEEec
Q psy13776 71 LRRPPGREAYPGDV----FYLHSRLLERSAKMSEA--HGGG--SLTALPVIETQAGDVSAYIPTNVISIT-DGQIFLETE 141 (539)
Q Consensus 71 ~~e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f--~~g~--~G~vl~l~~~~~d~v~l~~~g~~~gi~-~G~~V~~tg 141 (539)
+..+.|.+.+|.+. .|+.++ .++|++.| +++. .|+|+++++ |++.+++|+++.|++ .|+.|++||
T Consensus 4 ~~~~~g~V~~v~g~~v~v~gl~~~---~~ge~v~i~~~~g~~~~geVv~~~~---~~~~~~~~~~~~gl~~~g~~V~~tg 77 (464)
T 3gqb_B 4 LKKEYTGITYISGPLLFVENAKDL---AYGAIVDIKDGTGRVRGGQVIEVSE---EYAVIQVFEETTGLDLATTSVSLVE 77 (464)
T ss_dssp -CCCBCCEEEEETTEEEEESCTTS---CTTCEEEEECTTSCEEEEEEEEEES---SEEEEEESSCCTTCCSSSCEEEEEE
T ss_pred ccceeeEEEEEECCEEEEecCCCC---CcCCEEEEEcCCCCEEEEEEEEEeC---CeEEEEEecCccccccCCCEEEECC
Confidence 44677888888776 445555 88999988 3443 899999999 999999999999999 999999999
Q ss_pred ccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCC
Q psy13776 142 LFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQ 216 (539)
Q Consensus 142 ~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~g 216 (539)
++++||||++|||||+ +|+|+||++++..+...+ .++++..|.++++||+||||+||+|+|||||||++|||++|
T Consensus 78 ~~~~vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G 157 (464)
T 3gqb_B 78 DVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSG 157 (464)
T ss_dssp SSCEEEECSTTTTEEEETTCCBCSSSCCCCCSEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETT
T ss_pred CCcEEEeChHhcCCEeccCCcccCCCccccCcceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEecCCC
Confidence 9999999999999999 999999999886654322 23445555556999999999999999999999999999999
Q ss_pred CCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhc-ccCceEEEEEeeccchhH
Q psy13776 217 TGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQD-EKKKLYCIYVAIGQKRST 295 (539)
Q Consensus 217 tGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~-~~~~~~~Vy~~IGer~~e 295 (539)
+|||+|+ .+|+||+.. +. .+ ...+ .+++++|||++||||++|
T Consensus 158 ~GKt~L~-~~Ia~~~~a--------------------~~----------~~------~~~~~d~~~~~~V~~~iGeR~~E 200 (464)
T 3gqb_B 158 LPANEIA-AQIARQATV--------------------RP----------DL------SGEGEKEEPFAVVFAAMGITQRE 200 (464)
T ss_dssp SCHHHHH-HHHHHHCBC--------------------CH----------HH------HCCCSTTCCEEEEEEEEEECHHH
T ss_pred CCchHHH-HHHHHHHHh--------------------cc----------cc------cccccCCCceEEEEEEecCchHH
Confidence 9999998 689988753 00 00 0000 146789999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHH-CCCcEEEEecChhHHHHHhHHhhhccCCCCCC
Q psy13776 296 VAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 374 (539)
Q Consensus 296 v~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd-~GkdVLli~DslTr~A~A~Reisl~lgepP~r 374 (539)
|++|+++++++|+|+||++|++|+|+||.+|+++||+|||+|||||| +|+|||++|||+||||+||||||+++||||++
T Consensus 201 v~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~ 280 (464)
T 3gqb_B 201 LSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGR 280 (464)
T ss_dssp HHHHHHHHHHTSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCG
T ss_pred HHHHHHHhhhcccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999999999999999999999998 69999999999999999999999999999999
Q ss_pred CCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcc
Q psy13776 375 EAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVG 454 (539)
Q Consensus 375 ~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~ 454 (539)
+||||++|+.|++|+||||+++. ++||||++|+|++|+||++|||||+++|||||||||||+||++|
T Consensus 281 ~GYp~~~f~~l~~l~ERag~~~~--~~GSIT~l~~v~~~~dD~~~pi~~~~~~i~dg~ivLsr~La~~g----------- 347 (464)
T 3gqb_B 281 RGYPGYMYTDLATIYERAGVVEG--KKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKG----------- 347 (464)
T ss_dssp GGSBTTHHHHHHHHHTSCBCBTT--CSCEEEEEEEEEETTSCTTSHHHHHHHHHSSEEEEBCHHHHHTT-----------
T ss_pred ccCCchHHHHhHHHHHhhcccCC--CCCcEEEEEEEEccCCCccCchhHHHhhhcCeEEEEcHHHHhCC-----------
Confidence 99999999999999999999863 48999999999999999999999999999999999999999999
Q ss_pred cEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhh-----HHH-HHhhhhhhHHH
Q psy13776 455 VVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQT-----RAM-KQTGKIRSWNG 528 (539)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~-----~~~-~~~~~~r~~~~ 528 (539)
+|||||++.|+||+++.... ++| +.+.++++
T Consensus 348 ----------------------------------------~yPAIdvl~S~SR~m~~~ig~~~~~~~h~~~a~~l~~--- 384 (464)
T 3gqb_B 348 ----------------------------------------IYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQLYS--- 384 (464)
T ss_dssp ----------------------------------------CSSCBCTTTCEETTGGGTSSTTTSCTTHHHHHHHHHH---
T ss_pred ----------------------------------------CCCCcCcccchhhcchhhcCcccCcHHHHHHHHHHHH---
Confidence 79999999999999777644 788 55555555
Q ss_pred HHHHhhhhh
Q psy13776 529 WLSLLKQLY 537 (539)
Q Consensus 529 ~~~~~~~~~ 537 (539)
.|++|+++.
T Consensus 385 ~~~~~~el~ 393 (464)
T 3gqb_B 385 AYANGVDIR 393 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
No 7
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=9.6e-95 Score=772.81 Aligned_cols=360 Identities=21% Similarity=0.286 Sum_probs=320.9
Q ss_pred ccCceeeecCCe----eEEccchhhhhcccccc--cCCe--EEEEEeccccCCCcEEEEcccCCcCCC-CCCEEEEeccc
Q psy13776 73 RPPGREAYPGDV----FYLHSRLLERSAKMSEA--HGGG--SLTALPVIETQAGDVSAYIPTNVISIT-DGQIFLETELF 143 (539)
Q Consensus 73 e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f--~~g~--~G~vl~l~~~~~d~v~l~~~g~~~gi~-~G~~V~~tg~~ 143 (539)
.+.|.+.+|.+. .|+.++ .++|++.| +++. .|+|+++++ |++.+++|+++.|++ .|++|++||++
T Consensus 10 ~~~g~v~~v~g~~v~v~gl~~~---~~ge~v~i~~~~g~~~~geVv~~~~---~~~~~~~~~~~~gl~~~g~~V~~tg~~ 83 (465)
T 3vr4_D 10 KEYRTIKEVVGPLMAVEKVSGV---KYEELIEVRMQNGEIRRGQVLEVQE---DKAMVQIFEGTSGINLKNSSVRFLGHP 83 (465)
T ss_dssp -CBCCEEEEETTEEEEESCCSC---CTTCEEEEECTTSCEEEEEEEEEES---SEEEEEETTCCTTCCTTTCEEEECSSC
T ss_pred ceEEEEEEEECCEEEEecCCCC---CcCCEEEEEcCCCCEEEEEEEEEeC---CeEEEEEecCccccccCCCEEEECCCc
Confidence 567777777766 445555 78888888 3443 899999999 999999999999999 89999999999
Q ss_pred ccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCCC
Q psy13776 144 YKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTG 218 (539)
Q Consensus 144 ~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtG 218 (539)
++||||++|||||+ +|+|+||++++..+...+ .++++..|..+++||+||||+||+|+|||||||++|||++|+|
T Consensus 84 ~~vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~G 163 (465)
T 3vr4_D 84 LQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLP 163 (465)
T ss_dssp CEEEECGGGTTEEEETTSCBCSCCCCCCCSEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSC
T ss_pred ceeecchhhccceeccCCcccCCCCCCcccceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCCCCcC
Confidence 99999999999999 999999999886654332 2344445555599999999999999999999999999999999
Q ss_pred chHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHH
Q psy13776 219 KTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQ 298 (539)
Q Consensus 219 KTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e 298 (539)
||+|+ .+|+||+.. + .++++++|||++||||++||++
T Consensus 164 Kt~L~-~~Ia~~~~~--------------------~----------------------~d~~~~~~V~~~iGeR~~Ev~e 200 (465)
T 3vr4_D 164 HKELA-AQIARQATV--------------------L----------------------DSSDDFAVVFAAIGITFEEAEF 200 (465)
T ss_dssp HHHHH-HHHHHHCBC--------------------S----------------------SCSSCEEEEEEEEEECHHHHHH
T ss_pred hHHHH-HHHHHHHHh--------------------c----------------------cCCCceEEEEEEecCCcHHHHH
Confidence 99998 689988753 0 0135789999999999999999
Q ss_pred HHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHH-CCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCC
Q psy13776 299 IVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 377 (539)
Q Consensus 299 ~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd-~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gy 377 (539)
|+++++++++|+||++|++|+|+||.+|+++||+|||+|||||| +|+|||++|||+||||+||||||+++||||+++||
T Consensus 201 ~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~A~A~REisl~lge~P~~~GY 280 (465)
T 3vr4_D 201 FMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGY 280 (465)
T ss_dssp HHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGS
T ss_pred HHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHhhcCCCCccccC
Confidence 99999999999999999999999999999999999999999999 69999999999999999999999999999999999
Q ss_pred CCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEE
Q psy13776 378 PGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVV 457 (539)
Q Consensus 378 Pg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~ 457 (539)
||++|+.|++|+||||+++. ++||||+||+|++|+||++|||||+++|||||||||||+||++|
T Consensus 281 p~~vf~~l~~l~ERAg~~~~--~~GSIT~i~tv~~~~dD~~~pI~~~~~~i~dg~ivLsr~La~~g-------------- 344 (465)
T 3vr4_D 281 PGYLYTNLATLFERAGRIRG--LKGSVTQIPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSG-------------- 344 (465)
T ss_dssp CTTHHHHHHHHHTSCEEETT--CSCEEEEEEEEECGGGCTTSHHHHHHHHHSSEEEEBCHHHHHTT--------------
T ss_pred CchHHHHhHHHHHhhhccCC--CCCcEEEEEEEEecCCCcccchhHHHhhhcCeEEEEcHHHHhCC--------------
Confidence 99999999999999999863 48999999999999999999999999999999999999999999
Q ss_pred ecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhh-----HHH-HHhhhhhhHHHHHH
Q psy13776 458 FGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQT-----RAM-KQTGKIRSWNGWLS 531 (539)
Q Consensus 458 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~-----~~~-~~~~~~r~~~~~~~ 531 (539)
+|||||++.|+||+++.... ++| +.+.++|+ .|+
T Consensus 345 -------------------------------------~yPAIdvl~S~SR~m~~~ig~~~~~~~h~~~a~~l~~---~~~ 384 (465)
T 3vr4_D 345 -------------------------------------IQPPIDVLPSLSRLKDKGTGAGKTREDHAATMNQLFA---AYA 384 (465)
T ss_dssp -------------------------------------CSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHH---HHH
T ss_pred -------------------------------------CCCCCCccccchhcchhhcCcccCCHHHHHHHHHHHH---HHH
Confidence 79999999999999876544 788 55565555 899
Q ss_pred Hhhhhh
Q psy13776 532 LLKQLY 537 (539)
Q Consensus 532 ~~~~~~ 537 (539)
+|+++.
T Consensus 385 ~~~el~ 390 (465)
T 3vr4_D 385 QGKQAK 390 (465)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
No 8
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=2.6e-93 Score=764.76 Aligned_cols=360 Identities=21% Similarity=0.286 Sum_probs=300.3
Q ss_pred ccCceeeecCCe----eEEccchhhhhccccccc--CC--eEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccc
Q psy13776 73 RPPGREAYPGDV----FYLHSRLLERSAKMSEAH--GG--GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFY 144 (539)
Q Consensus 73 e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~--~g--~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~ 144 (539)
...|.+.+|++. .++.++ ..+|++.|. ++ ..|+|+++++ |++.+++|+++.||++|++|++||+++
T Consensus 12 ~~~g~V~~V~g~vv~v~g~~~~---~~ge~v~i~~~~g~~~~geV~~~~~---~~v~~~~~~~t~gl~~G~~V~~tg~~l 85 (469)
T 2c61_A 12 KEYKTITQIAGPLIFVEKTEPV---GYNEIVNIKMGDGTVRRGQVLDSSA---DIVVVQVFEGTGGLDKDCGVIFTGETL 85 (469)
T ss_dssp ----------CCEEEEECCSCC---CTTCEEEEECTTSCEEEEEEEEECS---SEEEEEEC-------------CEEEBC
T ss_pred ccccEEEEEECcEEEEeeCCCC---CcCCEEEEEeCCCCEEEEEEEEEeC---CEEEEEEeCCCcCCCCCCEEEEcCCCc
Confidence 556777777666 344444 788888883 33 4589999999 999999999999999999999999999
Q ss_pred cccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCCCc
Q psy13776 145 KVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGK 219 (539)
Q Consensus 145 ~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGK 219 (539)
+||||++|||||+ +|+||||++++..+...+ .+|++..|..+++||+||||+||+|+|||||||++|||++|+||
T Consensus 86 ~vpvg~~lLGRV~d~lG~PiDg~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GK 165 (469)
T 2c61_A 86 KLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPH 165 (469)
T ss_dssp EEEECGGGTTCEEETTSCBSSSCCCCCCSEEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCH
T ss_pred EEEccccceeeEEcccCCCCCCCCCCCccccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECCCCCCH
Confidence 9999999999999 999999999886554322 23444455556999999999999999999999999999999999
Q ss_pred hHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHH
Q psy13776 220 TALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQI 299 (539)
Q Consensus 220 TtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~ 299 (539)
|+|+ .+|++++.. |. .+++++|||++||||++||++|
T Consensus 166 t~Ll-~~Ia~~~~~--------------------n~----------------------~~~~~~~V~~~iGER~~Ev~e~ 202 (469)
T 2c61_A 166 NEIA-LQIARQASV--------------------PG----------------------SESAFAVVFAAMGITNEEAQYF 202 (469)
T ss_dssp HHHH-HHHHHHCBC--------------------TT----------------------CSSCEEEEEEEEEECHHHHHHH
T ss_pred HHHH-HHHHHHHhh--------------------cc----------------------CCCCcEEEEEEccCCcHHHHHH
Confidence 9998 688877653 00 1235799999999999999999
Q ss_pred HHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHH-HCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCC
Q psy13776 300 VKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYP 378 (539)
Q Consensus 300 ~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFr-d~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyP 378 (539)
+++++++++|+||++|++|+|+||.+|+++||+|||+||||| |+|+|||++|||+||||+||||||+++||||+++|||
T Consensus 203 ~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp 282 (469)
T 2c61_A 203 MSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYP 282 (469)
T ss_dssp HHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCC
T ss_pred HHHHHhccCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcC
Confidence 999999999999999999999999999999999999999999 5999999999999999999999999999999999999
Q ss_pred CchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEe
Q psy13776 379 GDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVF 458 (539)
Q Consensus 379 g~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~ 458 (539)
|++|+.|++|+||||+++. .+||||++|+|++|+||++|||||+++|||||||||||+||++|
T Consensus 283 ~~l~~~l~~l~ERAg~~~~--~~GSIT~i~~v~~~~dD~~dPI~~~~~~i~dg~ivLsr~La~~g--------------- 345 (469)
T 2c61_A 283 GYMYTDLATLYERAGIVKG--AKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKG--------------- 345 (469)
T ss_dssp THHHHHHHHHHTSCEEBTT--SSCEEEEEEEEECCSCTTTSCCCCCGGGGTTEEEEBCHHHHHTT---------------
T ss_pred chhhhhhhhHHhhccccCC--CCCceeeeeeeecCCCCcCcchHHHHhhccCcEEEEcHHHHhCC---------------
Confidence 9999999999999999864 37999999999999999999999999999999999999999999
Q ss_pred cccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchh-----hhHHHH-HhhhhhhHHHHHHH
Q psy13776 459 GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAA-----QTRAMK-QTGKIRSWNGWLSL 532 (539)
Q Consensus 459 ~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~-----~~~~~~-~~~~~r~~~~~~~~ 532 (539)
+|||||++.|+||+++.+ +.++|+ .+.++++ .|+.
T Consensus 346 ------------------------------------~yPAIdvl~S~SR~~~~~ig~~~~~~~~~~~a~~l~~---~l~~ 386 (469)
T 2c61_A 346 ------------------------------------IYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYA---GYAE 386 (469)
T ss_dssp ------------------------------------CSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHH---HHHH
T ss_pred ------------------------------------CCCccCccccccccchhhcccccCCHHHHHHHHHHHH---HHHH
Confidence 799999999999999998 899994 4555555 8888
Q ss_pred hhhhh
Q psy13776 533 LKQLY 537 (539)
Q Consensus 533 ~~~~~ 537 (539)
|++|.
T Consensus 387 ~~eL~ 391 (469)
T 2c61_A 387 GRDLR 391 (469)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88863
No 9
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=8e-90 Score=738.22 Aligned_cols=355 Identities=19% Similarity=0.259 Sum_probs=306.5
Q ss_pred hhcccccccCce--eeecCCeeEEccchhhhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEeccc
Q psy13776 66 QMSLLLRRPPGR--EAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELF 143 (539)
Q Consensus 66 ei~g~~~e~~G~--v~~IGDg~gL~~~~~~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~ 143 (539)
+|.|.++++.|+ .+.+++.|.+........+||++ ++++ +.+.+++|+++.|+++|++|++||++
T Consensus 19 ~v~G~vv~v~~~~~~~~i~~~~~i~~~~~~~~~eV~~----------~~~~---~~v~~~~~~~t~Gl~~G~~V~~tg~~ 85 (482)
T 2ck3_D 19 AVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQ----------HLGE---STVRTIAMDGTEGLVRGQKVLDSGAP 85 (482)
T ss_dssp EEETTEEEEEESSCCCCTTCEEEESSCSSCCEEEEEE----------EEET---TEEEEEESSCCTTCBTTCEEEECSSS
T ss_pred EEEccEEEEEecCccCcccceEEEeeCCCcEEEEEeE----------EecC---CeEEEEeccCccCCCCCCEEEEcCCc
Confidence 455666665554 44555555543110013344443 3444 77999999999999999999999999
Q ss_pred ccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeeeeccCCCC
Q psy13776 144 YKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTG 218 (539)
Q Consensus 144 ~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtG 218 (539)
++||||++|||||+ +|+|+||++++..+..++ .+|++..|..+++||+||||+||+|+|||||||++|||++|+|
T Consensus 86 ~~vpvG~~lLGRV~d~lG~PiDg~~~~~~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~G 165 (482)
T 2ck3_D 86 IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG 165 (482)
T ss_dssp CEEECSGGGBTCEECTTSCBCSSSCSCCCCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSS
T ss_pred ceeeccccccCCEEcccCcCcCCcCCCCccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecCCCCC
Confidence 99999999999999 999999999886554332 2344444444599999999999999999999999999999999
Q ss_pred chHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHH
Q psy13776 219 KTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQ 298 (539)
Q Consensus 219 KTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e 298 (539)
||+|+.+++.|++.. +..+|||++||||++||++
T Consensus 166 KT~L~~~i~~~~~~~----------------------------------------------~~~v~V~~~iGER~rEv~e 199 (482)
T 2ck3_D 166 KTVLIMELINNVAKA----------------------------------------------HGGYSVFAGVGERTREGND 199 (482)
T ss_dssp HHHHHHHHHHHTTTT----------------------------------------------CSSEEEEEEESCCHHHHHH
T ss_pred hHHHHHHHHHhhHhh----------------------------------------------CCCEEEEEECCCcchHHHH
Confidence 999997766665532 1237999999999999999
Q ss_pred HHHHHhcCCCCc------eEEEEEecCCCChhhhhhhhHHHHHHHHHHHH-CCCcEEEEecChhHHHHHhHHhhhccCCC
Q psy13776 299 IVKRLTDSGAMG------YTIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRP 371 (539)
Q Consensus 299 ~~~~l~~~~~~~------~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd-~GkdVLli~DslTr~A~A~Reisl~lgep 371 (539)
|++++++.++++ ||++|++|+|+||.+|+++||+|||+|||||| +|+|||+++||+||||+||||||+++|||
T Consensus 200 ~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~A~rEis~~lge~ 279 (482)
T 2ck3_D 200 LYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRI 279 (482)
T ss_dssp HHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHHHHGGGTCC
T ss_pred HHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHhhhhcCCC
Confidence 999999999998 99999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCC
Q psy13776 372 PGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPD 451 (539)
Q Consensus 372 P~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~ 451 (539)
|+++||||++|+.|++|+|||++ .++||||++|+|++|+||++|||||++++|+||||+|||+||++|
T Consensus 280 P~~~GYpp~l~~~l~~l~ERag~----~~~GSIT~i~tv~v~~dD~tdPi~d~~~~i~dG~ivLsr~La~~g-------- 347 (482)
T 2ck3_D 280 PSAVGYQPTLATDMGTMQERITT----TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELG-------- 347 (482)
T ss_dssp CCGGGCCTTHHHHHHHHHTTSSC----CSSCCEEEEEEEECGGGCTTSHHHHHHGGGCSEEEEBCHHHHTTT--------
T ss_pred CccccCchhHHHHhHHHHHhhcC----CCCCceeeeEEEEecCCCCCCccHHHHHHhcCeEEEEcHHHHhCC--------
Confidence 99999999999999999999986 357999999999999999999999999999999999999999999
Q ss_pred CcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCch-hhhHHH-HHhhhhhhHHHH
Q psy13776 452 NVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSA-AQTRAM-KQTGKIRSWNGW 529 (539)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~-~~~~~~-~~~~~~r~~~~~ 529 (539)
+|||||++.|+||+++. ..+++| +.+.++|+ +
T Consensus 348 -------------------------------------------iyPAIDvl~S~SR~~~~~i~~~~~~~~a~~lr~---~ 381 (482)
T 2ck3_D 348 -------------------------------------------IYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQK---I 381 (482)
T ss_dssp -------------------------------------------CSSCBCTTSCEETTCSHHHHCHHHHHHHHHHHH---H
T ss_pred -------------------------------------------CCCccCcccccccCCCcccCCHHHHHHHHHHHH---H
Confidence 79999999999999955 788889 66778888 8
Q ss_pred HHHhhhhh
Q psy13776 530 LSLLKQLY 537 (539)
Q Consensus 530 ~~~~~~~~ 537 (539)
|++|+++.
T Consensus 382 la~y~el~ 389 (482)
T 2ck3_D 382 LQDYKSLQ 389 (482)
T ss_dssp HHHHHHHH
T ss_pred HHhhhHHH
Confidence 88888863
No 10
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=7.8e-90 Score=740.74 Aligned_cols=356 Identities=19% Similarity=0.238 Sum_probs=311.9
Q ss_pred hhhcccccccCcee---eecCCeeEEccch---h--hhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCCE
Q psy13776 65 RQMSLLLRRPPGRE---AYPGDVFYLHSRL---L--ERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 136 (539)
Q Consensus 65 ~ei~g~~~e~~G~v---~~IGDg~gL~~~~---~--~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~ 136 (539)
.+|.|++++..|.. ..+++.|.+.... . ...+||++ ++++ +.+.+++|+++.|+++|++
T Consensus 24 ~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~----------~~~~---~~v~~~~~~~t~Gl~~G~~ 90 (498)
T 1fx0_B 24 AQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQ----------LLGN---NRVRAVAMSATDGLTRGME 90 (498)
T ss_dssp EEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEE----------CCSS---SCEEEEESSCCTTCCTTCE
T ss_pred EEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEE----------EecC---CeEEEEEecCccCCCCCCE
Confidence 45677777777763 5677778774211 0 13455555 2333 7799999999999999999
Q ss_pred EEEecccccccCCCcccceeE--eeeccCCCCCcccchhcc---ccccccccccccccccccceeeeeeeeccccceeee
Q psy13776 137 FLETELFYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELI 211 (539)
Q Consensus 137 V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI 211 (539)
|++||++++||||++|||||+ +|+|+||++++..+..++ .+|++..|..+++||+||||+||+|+|||||||++|
T Consensus 91 V~~tg~~~~vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gI 170 (498)
T 1fx0_B 91 VIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGL 170 (498)
T ss_dssp EEECSSSCEEEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEE
T ss_pred EEecCCcceEecCccceeeEEcccccCCCCcCCcCCCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEe
Confidence 999999999999999999999 999999999886554332 234444554559999999999999999999999999
Q ss_pred eccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeecc
Q psy13776 212 IGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQ 291 (539)
Q Consensus 212 ~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGe 291 (539)
||++|+|||+|+++++.|++.. ++.+|||++|||
T Consensus 171 fgg~GvGKT~L~~~l~~~~a~~----------------------------------------------~~~v~V~~~iGE 204 (498)
T 1fx0_B 171 FGGAGVGKTVLIMELINNIAKA----------------------------------------------HGGVSVFGGVGE 204 (498)
T ss_dssp EECSSSSHHHHHHHHHHHTTTT----------------------------------------------CSSCEEEEEESC
T ss_pred ecCCCCCchHHHHHHHHHHHhh----------------------------------------------CCCEEEEEEccc
Confidence 9999999999997766665532 123799999999
Q ss_pred chhHHHHHHHHHhcCCCCc-------eEEEEEecCCCChhhhhhhhHHHHHHHHHHHH-CCCcEEEEecChhHHHHHhHH
Q psy13776 292 KRSTVAQIVKRLTDSGAMG-------YTIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQ 363 (539)
Q Consensus 292 r~~ev~e~~~~l~~~~~~~-------~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd-~GkdVLli~DslTr~A~A~Re 363 (539)
|++||++|++++++.++|+ ||++|++|+|+||.+|+++||+|+|+|||||| +|+|||+++||+||||+|+||
T Consensus 205 R~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A~A~rE 284 (498)
T 1fx0_B 205 RTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSE 284 (498)
T ss_dssp CSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHHHHHHH
T ss_pred CcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHH
Confidence 9999999999999999998 99999999999999999999999999999999 999999999999999999999
Q ss_pred hhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhcc
Q psy13776 364 MSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 443 (539)
Q Consensus 364 isl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g 443 (539)
||+++||||+++||||++|+.|++|+|||++ .++||||++|+|++|+||++|||||++++|+||||+|||+||++|
T Consensus 285 vs~~lge~Ps~~GYpp~l~~~l~~L~ERag~----~~~GSIT~i~tV~v~~dD~tdPi~d~~~~ilDG~ivLsR~La~~g 360 (498)
T 1fx0_B 285 VSALLGRMPSAVGYQPTLSTEMGSLQERITS----TKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKG 360 (498)
T ss_dssp HHHHHTCCCCGGGCCTTHHHHHHHTSSSSSC----CTTCEECCEEEEECGGGCSSSHHHHHHHTTCSEEEEBCSTTTTTT
T ss_pred HHhhcCCCCccccCCchhhhHHHHHHHhccC----CCCCceeeeEEEEccCCCcCCcchHHHHHhhCceEEehhhHHhCC
Confidence 9999999999999999999999999999996 357999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCch-hhhHHH-HHhh
Q psy13776 444 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSA-AQTRAM-KQTG 521 (539)
Q Consensus 444 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~-~~~~~~-~~~~ 521 (539)
+|||||++.|+||+++. ..+++| +.+.
T Consensus 361 ---------------------------------------------------iyPAID~l~S~SR~~~~~i~~~~h~~~a~ 389 (498)
T 1fx0_B 361 ---------------------------------------------------IYPAVDPLDSTSTMLQPRIVGEEHYEIAQ 389 (498)
T ss_dssp ---------------------------------------------------CSSCBCSSSCCBTTCSTTTTCHHHHHHHH
T ss_pred ---------------------------------------------------CCceeccccccccCCCcccCCHHHHHHHH
Confidence 79999999999999866 667889 6677
Q ss_pred hhhhHHHHHHHhhhhh
Q psy13776 522 KIRSWNGWLSLLKQLY 537 (539)
Q Consensus 522 ~~r~~~~~~~~~~~~~ 537 (539)
++|+ +|++|+++.
T Consensus 390 ~lr~---~la~y~el~ 402 (498)
T 1fx0_B 390 RVKE---TLQRYKELQ 402 (498)
T ss_dssp HHHH---HHHHHHHHH
T ss_pred HHHH---HHHhhHHHH
Confidence 8888 889998864
No 11
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=5.2e-88 Score=731.96 Aligned_cols=354 Identities=19% Similarity=0.220 Sum_probs=251.7
Q ss_pred CceeeecCCe----eEEccchhhhhccccccc-CCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccccccCC
Q psy13776 75 PGREAYPGDV----FYLHSRLLERSAKMSEAH-GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKVDRG 149 (539)
Q Consensus 75 ~G~v~~IGDg----~gL~~~~~~~~gEVV~f~-~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG 149 (539)
.|.+.+|++. .|+.++ ..+|++.|. ++..|+|+++++ |++.+++|+++.||++|++|++||++++||+|
T Consensus 4 ~G~V~~V~G~iv~~~g~~~~---~~gElv~v~~~~l~geVi~l~~---d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG 77 (588)
T 3mfy_A 4 KGRIIRVTGPLVVADGMKGA---KMYEVVRVGELGLIGEIIRLEG---DKAVIQVYEETAGVRPGEPVVGTGASLSVELG 77 (588)
T ss_dssp ---------------------------------------------------------------CCCCCSSSSSCCEEEES
T ss_pred eeEEEEEECCEEEEEcCCCC---ccCCEEEEcCCceEEEEEEecC---CeEEEEEccCCCCCCCCCEEEEcCCCCEEEeC
Confidence 4555555544 344444 667776664 356777777777 99999999999999999999999999999999
Q ss_pred CcccceeE--eeeccCCCCCcccc--------------hh---------------------------c------c-----
Q psy13776 150 SINCGQLI--IGDRQTGKTALAID--------------TI---------------------------I------N----- 175 (539)
Q Consensus 150 ~~LLGRVv--lG~PiDgk~~i~~~--------------~~---------------------------~------~----- 175 (539)
++|||||+ +|+|||+++++... .. + +
T Consensus 78 ~gLLGrV~DglgrPLd~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g 157 (588)
T 3mfy_A 78 PRLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEG 157 (588)
T ss_dssp TTCTTCEEETTCCSSSSCCCCCSSSCCCCCCCCSSCSSCCEEEEECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCE
T ss_pred HHHHhhccCCCCCcccCcccccccccccccccCccccccccccccccccCcccccCceEEEEecccceeeeeecCCCCCc
Confidence 99999999 99999998542100 00 0 0
Q ss_pred ---------------------------------------ccccccccccccccccccceeeeeeeeccccceeeeeccCC
Q psy13776 176 ---------------------------------------QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQ 216 (539)
Q Consensus 176 ---------------------------------------~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~g 216 (539)
.+++...|..+++||+||||+||+|+|||||||++|||++|
T Consensus 158 ~v~~i~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~~~~p~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~g 237 (588)
T 3mfy_A 158 EIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAG 237 (588)
T ss_dssp EEEEECCSEEECTTSEEEEEECTTCCEEEEESCEEEETTSCCCCSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCCS
T ss_pred eEEEeccCCcccccceEEEEecCCCccccccccccccccCCCchhhhccCCcccccCcchhhccCCcccCCeEEeecCCC
Confidence 00011123345999999999999999999999999999999
Q ss_pred CCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHH
Q psy13776 217 TGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTV 296 (539)
Q Consensus 217 tGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev 296 (539)
+|||+|+ .+|+||+.. .+|||++||||++||
T Consensus 238 ~GKT~L~-~~ia~~~~~------------------------------------------------~~~V~~~iGER~~Ev 268 (588)
T 3mfy_A 238 SGKTVTQ-HQLAKWSDA------------------------------------------------QVVIYIGCGERGNEM 268 (588)
T ss_dssp HHHHHHH-HHHHHHSSC------------------------------------------------SEEEEEECCSSSSHH
T ss_pred CCHHHHH-HHHHhccCC------------------------------------------------CEEEEEEecccHHHH
Confidence 9999998 567776532 289999999999999
Q ss_pred HHHHHHHhc-------CCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccC
Q psy13776 297 AQIVKRLTD-------SGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369 (539)
Q Consensus 297 ~e~~~~l~~-------~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lg 369 (539)
++|++++.+ +++|+||++|++|+|+||.+|+++||+|+|+||||||+|+|||+++||+||||+||||||+++|
T Consensus 269 ~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~A~A~rEis~~lg 348 (588)
T 3mfy_A 269 TDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLE 348 (588)
T ss_dssp HHHHHHTTTCEETTTTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTCCCCC--------
T ss_pred HHHHHHHHHhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHHHHHHHHHHHhcc
Confidence 999999865 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchhhchhHHHHhhhcccCC---CCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcC
Q psy13776 370 RPPGREAYPGDVFYLHSRLLERSAKMSEA---HGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMAL 446 (539)
Q Consensus 370 epP~r~gyPg~vf~~~srLlERag~~~~~---~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~ 446 (539)
|||+++||||++|+.+++|+||||++++. .++||||++|+|++|+||++||||+++++|+||||+|||+||++|
T Consensus 349 e~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~~gdD~sdpi~~~~~~i~dg~i~Lsr~La~~g--- 425 (588)
T 3mfy_A 349 EMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRR--- 425 (588)
T ss_dssp --------CCHHHHHHHHHHTTCEEEECSSSSCCEEEEEEEEECCCTTSCSSCSHHHHHHHHCSEECCBCHHHHHTT---
T ss_pred CCCccccCCchhhhhhhHHHhccccccccCCCCCCcceEEEEEEECCCCCCCCcchHHHHHhccCeeecCHHHHhCC---
Confidence 99999999999999999999999998632 358999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchh-------hhHHH-H
Q psy13776 447 NLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAA-------QTRAM-K 518 (539)
Q Consensus 447 ~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~-------~~~~~-~ 518 (539)
+|||||++.|+||+++.+ ..+.| +
T Consensus 426 ------------------------------------------------~yPAId~l~S~SR~~~~i~~~~~~~~~~~h~~ 457 (588)
T 3mfy_A 426 ------------------------------------------------HFPAINWLTSYSLYVDAVKDWWHKNIDPEWKA 457 (588)
T ss_dssp ------------------------------------------------CSSCBCTTTCEETTHHHHHHHHHHHTCTTHHH
T ss_pred ------------------------------------------------CCCCcCcccchhhhcccccchhhccCCHHHHH
Confidence 799999999999999874 35667 6
Q ss_pred HhhhhhhHHHHHHHhhhhh
Q psy13776 519 QTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 519 ~~~~~r~~~~~~~~~~~~~ 537 (539)
.+.++|+ +|++|+++.
T Consensus 458 ~a~~~~~---~La~~~el~ 473 (588)
T 3mfy_A 458 MRDKAMA---LLQKESELQ 473 (588)
T ss_dssp HHHHHHH---HHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHH
Confidence 7777777 899998874
No 12
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=2.4e-86 Score=721.26 Aligned_cols=354 Identities=21% Similarity=0.240 Sum_probs=306.6
Q ss_pred CceeeecCCe----eEEccchhhhhccccccc-CCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccccccCC
Q psy13776 75 PGREAYPGDV----FYLHSRLLERSAKMSEAH-GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKVDRG 149 (539)
Q Consensus 75 ~G~v~~IGDg----~gL~~~~~~~~gEVV~f~-~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG 149 (539)
.|.+.+|.+. .++.++ ..+|++.+. ++..|+|+++++ |++.+++|+++.||++|++|++||++++||+|
T Consensus 10 ~G~V~~V~G~vv~v~g~~~~---~~gE~v~v~~~~l~gEVi~~~~---d~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG 83 (600)
T 3vr4_A 10 IGKIIKVSGPLVMAENMSEA---SIQDMCLVGDLGVIGEIIEMRQ---DVASIQVYEETSGIGPGEPVRSTGEALSVELG 83 (600)
T ss_dssp CEEEEEEETTEEEEESCTTS---CTTCEEEETTTTEEEEEEEEET---TEEEEEESSCCTTCCTTCEEEECSSSSEEEES
T ss_pred ceEEEEEECcEEEEEcCCCC---ccCCEEEECCCcEEEEEEEEcC---CcEEEEEccCCCCCCCCCEEEECCCCCEEEeC
Confidence 4666666554 333334 677887774 357888888888 99999999999999999999999999999999
Q ss_pred CcccceeE--eeeccCCC----C-----------Ccccchhc---------------------------------c----
Q psy13776 150 SINCGQLI--IGDRQTGK----T-----------ALAIDTII---------------------------------N---- 175 (539)
Q Consensus 150 ~~LLGRVv--lG~PiDgk----~-----------~i~~~~~~---------------------------------~---- 175 (539)
++|||||+ +|+|||++ + ++..++.+ +
T Consensus 84 ~~lLGrV~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~ 163 (600)
T 3vr4_A 84 PGIISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIK 163 (600)
T ss_dssp TTCTTCEECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEECSCTTCEECTTCEEEEEECSSSCEEEEECCTTCC
T ss_pred HHHHhhhhCcCCCcccccccccCccccccCCcCCCCCcccccccCcccccCCEecCCceEEEEecCCceeeeeecCCCCC
Confidence 99999999 99999987 4 12110000 0
Q ss_pred --------------------------------------ccccccccccccccccccceeeeeeeeccccceeeeeccCCC
Q psy13776 176 --------------------------------------QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQT 217 (539)
Q Consensus 176 --------------------------------------~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gt 217 (539)
.+++...|..+++||+||||+||+|+|||||||++|||++|+
T Consensus 164 g~v~~i~~g~~~v~~~v~~i~~~~g~~~i~~~~~wpv~~~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~ 243 (600)
T 3vr4_A 164 GTVQKIESGSFTIDDPICVIETEQGLKELTMMQKWPVRRGRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGA 243 (600)
T ss_dssp EEEEEECCEEECTTSCCEEEEETTEEEEECSCEEEETTSCCCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTS
T ss_pred ceEEEecCCcceeceeEEEEeccCCcccccccccccccCCCchhhccCCCceecccchhhhccCCccCCCEEeeecCCCc
Confidence 001111233559999999999999999999999999999999
Q ss_pred CchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHH
Q psy13776 218 GKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVA 297 (539)
Q Consensus 218 GKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~ 297 (539)
|||+|+ .+|+||+.. .+|||++||||++||+
T Consensus 244 GKT~L~-~~ia~~~~~------------------------------------------------~v~V~~~iGER~~Ev~ 274 (600)
T 3vr4_A 244 GKTVVQ-HQIAKWSDV------------------------------------------------DLVVYVGCGERGNEMT 274 (600)
T ss_dssp CHHHHH-HHHHHHSSC------------------------------------------------SEEEEEEEEECHHHHH
T ss_pred cHHHHH-HHHHhccCC------------------------------------------------CEEEEEEecccHHHHH
Confidence 999998 478887543 2799999999999999
Q ss_pred HHHHHHhc-------CCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCC
Q psy13776 298 QIVKRLTD-------SGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRR 370 (539)
Q Consensus 298 e~~~~l~~-------~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lge 370 (539)
+|++++++ +++|+||++|++|+|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||
T Consensus 275 e~~~~~~el~d~~~G~~~m~rtvvV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR~A~A~rEiS~~lge 354 (600)
T 3vr4_A 275 DVVNEFPELIDPNTGESLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSRWAEALREMSGRLEE 354 (600)
T ss_dssp HHHHHTTTCBCTTTCSBGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhccCC
Confidence 99999865 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhhchhHHHHhhhcccCC---CCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCC
Q psy13776 371 PPGREAYPGDVFYLHSRLLERSAKMSEA---HGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALN 447 (539)
Q Consensus 371 pP~r~gyPg~vf~~~srLlERag~~~~~---~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~ 447 (539)
||+++||||++|+.+++|+||||++++. .++||||++|+|++|+||++||||+++++|+||||+|||+||++|
T Consensus 355 ~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~~gdD~tdPi~~~t~~i~dg~ivLsr~La~~g---- 430 (600)
T 3vr4_A 355 MPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKR---- 430 (600)
T ss_dssp CBCGGGCBTTHHHHHHHHHTTSEEEECSSTTCCEEEEEEEEEECCSSSCTTSHHHHHHHTTCCEECCBCHHHHTTT----
T ss_pred CCccccCCchhhhHHHHHHHhhccccccCCCCCCcceEEEEEEECCCCCCCCcchhhhhhhccEEEEEhhhHHhCC----
Confidence 9999999999999999999999998632 358999999999999999999999999999999999999999999
Q ss_pred CCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchh-------hhHHH-HH
Q psy13776 448 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAA-------QTRAM-KQ 519 (539)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~-------~~~~~-~~ 519 (539)
+|||||++.|+||+++.+ ..+.| +.
T Consensus 431 -----------------------------------------------iyPAId~l~S~SR~~~~l~~~~~~~~~~~h~~~ 463 (600)
T 3vr4_A 431 -----------------------------------------------HFPSINWIQSYSLYSTEVGRYMDQILQQDWSDM 463 (600)
T ss_dssp -----------------------------------------------CSSCBCTTTCEETTHHHHHHHHHHHHTSCHHHH
T ss_pred -----------------------------------------------CCCccCcccchhhhcccccccccccCCHHHHHH
Confidence 799999999999999864 34566 66
Q ss_pred hhhhhhHHHHHHHhhhhh
Q psy13776 520 TGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 520 ~~~~r~~~~~~~~~~~~~ 537 (539)
+.++|+ +|++|+++.
T Consensus 464 a~~~~~---~la~~~el~ 478 (600)
T 3vr4_A 464 VTEGMR---ILQEEEQLN 478 (600)
T ss_dssp HHHHHH---HHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHH
Confidence 777777 899998874
No 13
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=2e-86 Score=719.41 Aligned_cols=338 Identities=20% Similarity=0.253 Sum_probs=297.2
Q ss_pred hhccccccc-CCeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCCC----C
Q psy13776 94 RSAKMSEAH-GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTGK----T 166 (539)
Q Consensus 94 ~~gEVV~f~-~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk----~ 166 (539)
..+|++.+. ++..|+|+++++ |++.+++|+++.|+++|++|++||++++||+|++|||||+ +|+|+|++ +
T Consensus 23 ~~gE~v~v~~~~l~gEVi~~~~---d~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~lLGrV~DglG~PlD~~~~~~g 99 (578)
T 3gqb_A 23 RMYDISKVGEEGLVGEIIRLDG---DTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTG 99 (578)
T ss_dssp CTTEEEEETTTTEEEEEEEEET---TEEEEEESSCCTTCCTTCEEEEEEEESEEEESTTCTTCEECTTSCBHHHHHHHHC
T ss_pred ccCCEEEECCCcEEEEEEEEcC---CcEEEEEcCCCCCCCCCCEEEECCCCCEEEeCHHHhhhhhCcCCCcccccccccC
Confidence 566666663 356778888777 9999999999999999999999999999999999999999 99999987 3
Q ss_pred C----------cccchhc---------------------------cc---c-----------------------------
Q psy13776 167 A----------LAIDTII---------------------------NQ---K----------------------------- 177 (539)
Q Consensus 167 ~----------i~~~~~~---------------------------~~---~----------------------------- 177 (539)
+ +..++.+ +. +
T Consensus 100 ~~~~~g~~~~~l~~~~~w~f~p~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i~~~G~~~v~~~i~~~~~g~ 179 (578)
T 3gqb_A 100 IYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKPAGEYTVEEPVVVLEDGT 179 (578)
T ss_dssp SBCCTTCCCCSSCSSSCEEEEECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEECCSEEECTTSCSEEETTCC
T ss_pred ccccccccCCCcCcccccccccccccCccccccceeeeecccccceecccCCCcCceeEEeccCCcccccceeEEeecCc
Confidence 2 1111000 00 0
Q ss_pred -------------ccccccccccccccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccc
Q psy13776 178 -------------RKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPY 244 (539)
Q Consensus 178 -------------~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~ 244 (539)
++...|..+++||+||||+||+|+|||||||++|||++|+|||+|+. +|+||+..
T Consensus 180 ~i~~~~~wPv~~~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l~~-~ia~~~~~----------- 247 (578)
T 3gqb_A 180 ELKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQQ-SLAKWSNA----------- 247 (578)
T ss_dssp EECSCEEEETTSCCCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHHHH-HHHHHSSC-----------
T ss_pred cccccccccccCCCChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHHHH-HHHhccCC-----------
Confidence 01112334599999999999999999999999999999999999984 78877543
Q ss_pred cCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhc-------CCCCceEEEEEe
Q psy13776 245 SGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTD-------SGAMGYTIIVSA 317 (539)
Q Consensus 245 ~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~-------~~~~~~tvvV~a 317 (539)
.+|||++||||++||++|++++++ +++|+||++|++
T Consensus 248 -------------------------------------~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtvvv~~ 290 (578)
T 3gqb_A 248 -------------------------------------DVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIAN 290 (578)
T ss_dssp -------------------------------------SEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEE
T ss_pred -------------------------------------CEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEE
Confidence 279999999999999999999865 679999999999
Q ss_pred cCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccC
Q psy13776 318 TASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSE 397 (539)
Q Consensus 318 tad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~ 397 (539)
|+|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||++++
T Consensus 291 tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR~A~A~rEis~~lge~P~~~GYp~~l~s~l~~l~ERAg~~~~ 370 (578)
T 3gqb_A 291 TSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVIT 370 (578)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHHTTCCCCSSSSCTTHHHHHHHHHTTCEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHhccCCCccccCCchhhhHHHHHHHhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred C-CCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccce
Q psy13776 398 A-HGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAI 476 (539)
Q Consensus 398 ~-~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 476 (539)
. .++||||++|+|++|+||++||||+++++|+||||+|||+||++|
T Consensus 371 ~~~~~GSIT~i~~v~~~gdD~tdPi~~~t~~i~dg~ivLsr~La~~g--------------------------------- 417 (578)
T 3gqb_A 371 LGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRR--------------------------------- 417 (578)
T ss_dssp TTSCEEEEEEEEECCCTTTCTTSHHHHHHHTTCSEECCBCHHHHHHT---------------------------------
T ss_pred CCCCCcceEEEEEEEcCCCCCCCcchHHHhhhcCceEEECHHHHhCC---------------------------------
Confidence 3 258999999999999999999999999999999999999999999
Q ss_pred eecccccccchhhccccCCCccccccccccccCchh-------hhHHH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 477 VDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAA-------QTRAM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 477 ~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~-------~~~~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
+|||||++.|+||+++.+ ..+.| +.+.++|+ +|++|+++.
T Consensus 418 ------------------~yPAId~l~S~SR~~~~v~~~~~~~~~~~h~~~a~~~~~---~l~~~~el~ 465 (578)
T 3gqb_A 418 ------------------HFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISE---LLQREAGLQ 465 (578)
T ss_dssp ------------------CSSCBCTTTCEESSHHHHHHHHHHHTCTTHHHHHHHHHH---HHHHHHTTT
T ss_pred ------------------CCCCcCcccchhhccccccccccccCCHHHHHHHHHHHH---HHHHHHHHH
Confidence 799999999999999863 35667 67777777 899999875
No 14
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=1.7e-83 Score=689.79 Aligned_cols=355 Identities=21% Similarity=0.256 Sum_probs=310.9
Q ss_pred hhcccccccCce---eeecCCeeEEccch---h----hhhcccccccCCeEEEEEeccccCCCcEEEEcccCCcCCCCCC
Q psy13776 66 QMSLLLRRPPGR---EAYPGDVFYLHSRL---L----ERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 135 (539)
Q Consensus 66 ei~g~~~e~~G~---v~~IGDg~gL~~~~---~----~~~gEVV~f~~g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~ 135 (539)
+|.|.+.++.|+ ...+|+.|.+.... . ...+||++ ++++ +.+.+++|+++.|+++|+
T Consensus 8 ~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~----------~~~~---~~v~~~~~~~t~gl~~G~ 74 (473)
T 1sky_E 8 QVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVAL----------HLGD---DTVRTIAMASTDGLIRGM 74 (473)
T ss_dssp EEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEE----------EEET---TEEEEEESSCCTTCCTTC
T ss_pred EEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeE----------EecC---CcEEEEEecCccCCCCCC
Confidence 456777788776 35899999885311 1 13455554 2333 779999999999999999
Q ss_pred EEEEecccccccCCCcccceeE--eeeccCCCCCcccc-hhcc---ccccccccccccccccccceeeeeeeecccccee
Q psy13776 136 IFLETELFYKVDRGSINCGQLI--IGDRQTGKTALAID-TIIN---QKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRE 209 (539)
Q Consensus 136 ~V~~tg~~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~-~~~~---~~~~~r~ri~~~epl~TGIraID~l~pIGrGQR~ 209 (539)
+|++||++++||||++|||||+ +|+|+||++++..+ ..++ .+|++..|..+++||+||||+||.|.|++||||+
T Consensus 75 ~V~~tg~~~~vpvg~~llGrv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~~ 154 (473)
T 1sky_E 75 EVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKI 154 (473)
T ss_dssp EEEEEEEECEEECSGGGTTCEECTTSCBCSSSCCCCTTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCEE
T ss_pred EEEEcCCcceeeccccceeeEEeecCCccCcccccCCCceeecccccCcchhhhcccCccccccchHHHHHhhhccCCEE
Confidence 9999999999999999999999 99999999988665 3322 2344444445599999999999999999999999
Q ss_pred eeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEee
Q psy13776 210 LIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAI 289 (539)
Q Consensus 210 lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~I 289 (539)
+|||++|+|||+|+.+.+.|++.. ...+|||++|
T Consensus 155 ~i~G~sGvGKTtL~~~l~~~~~~~----------------------------------------------~~~i~V~~~i 188 (473)
T 1sky_E 155 GLFGGAGVGKTVLIQELIHNIAQE----------------------------------------------HGGISVFAGV 188 (473)
T ss_dssp EEECCSSSCHHHHHHHHHHHHHHH----------------------------------------------TCCCEEEEEE
T ss_pred EEECCCCCCccHHHHHHHhhhhhc----------------------------------------------cCcEEEEeee
Confidence 999999999999995555554432 0236899999
Q ss_pred ccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHH-CCCcEEEEecChhHHHHHhHHhhhcc
Q psy13776 290 GQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLL 368 (539)
Q Consensus 290 Ger~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd-~GkdVLli~DslTr~A~A~Reisl~l 368 (539)
|||.+|+++|++++.+.++|+||++|+++++|||.+|++++++++++|||||| +|+|||+++||+||||+||||+|+++
T Consensus 189 Gerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR~a~A~reis~~~ 268 (473)
T 1sky_E 189 GERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALL 268 (473)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred CCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCC
Q psy13776 369 RRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNL 448 (539)
Q Consensus 369 gepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l 448 (539)
||||+++||||++|+.|++|+|||++ .++||||++|+|++|+||++|||||++++|+||||+|||+||++|
T Consensus 269 ge~P~~~GYp~~~~~~l~~l~ERa~~----~~~GSIT~i~tv~~~~dD~~dpi~~~~~~i~dg~ivLsr~La~~g----- 339 (473)
T 1sky_E 269 GRMPSAIGYQPTLATEMGQLQERITS----TAKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMG----- 339 (473)
T ss_dssp TCCCCGGGCCTTHHHHHHHHHTTSSC----BSSCEEEEEEECCCSTTCSSSHHHHHHHTTCSEEEEBCTTHHHHT-----
T ss_pred CCCCccccCCchhhhHHHHHHHHhcC----CCCCceEEEEEEEecCCCCCCcchHHHHhhcCceEEecHHHHhCC-----
Confidence 99999999999999999999999986 357999999999999999999999999999999999999999999
Q ss_pred CCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCch-hhhHHH-HHhhhhhhH
Q psy13776 449 EPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSA-AQTRAM-KQTGKIRSW 526 (539)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~-~~~~~~-~~~~~~r~~ 526 (539)
+|||||++.|+||+++. ..+++| +.+.++|+
T Consensus 340 ----------------------------------------------~yPAId~l~S~SR~~~~~~~~~~~~~~a~~lr~- 372 (473)
T 1sky_E 340 ----------------------------------------------IYPAVDPLVSTSRALAPEIVGEEHYQVARKVQQ- 372 (473)
T ss_dssp ----------------------------------------------CSSCBCTTTCCBTTCCHHHHHHHHHHHHHHHHH-
T ss_pred ----------------------------------------------CCCccccccccccccchhcCCHHHHHHHHHHHH-
Confidence 79999999999999977 566888 67778888
Q ss_pred HHHHHHhhhhh
Q psy13776 527 NGWLSLLKQLY 537 (539)
Q Consensus 527 ~~~~~~~~~~~ 537 (539)
+|+.|+++.
T Consensus 373 --~la~y~e~~ 381 (473)
T 1sky_E 373 --TLERYKELQ 381 (473)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHhHHHHH
Confidence 888888764
No 15
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-73 Score=595.22 Aligned_cols=308 Identities=18% Similarity=0.191 Sum_probs=262.6
Q ss_pred CcEEEEcc-cCCcCCCCCCEEEEecccccccCCCcccceeE--eeeccCC-CCCcccchhcccccccccccccccccccc
Q psy13776 118 GDVSAYIP-TNVISITDGQIFLETELFYKVDRGSINCGQLI--IGDRQTG-KTALAIDTIINQKRKKRRRLLKYNLLSAG 193 (539)
Q Consensus 118 d~v~l~~~-g~~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv--lG~PiDg-k~~i~~~~~~~~~~~~r~ri~~~epl~TG 193 (539)
|.+.+.+- =...+++.||.|...-++.+-.--..-|+||. .|.+.+. +....++.+.+..|..|.++ .++|++||
T Consensus 84 ~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~~~~~r~~fe~l~Pi~P~~R~~l-e~e~~~tG 162 (427)
T 3l0o_A 84 DDIYISPSQIRKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEAVNDRVNFDNLTPDYPRERFIL-ETDPKIYS 162 (427)
T ss_dssp SCEEECHHHHHHTTCCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC----CCCCGGGSCEECCCSBCCC-CCSTTCHH
T ss_pred CCeeeCHHHHHhcCCCCCCEEEEEEeCCCCCcccccceEEEecCCCChHHhccccccccCCCCCchhhccc-cccchhcc
Confidence 34544332 12468999999999887766443334567776 5554443 33344444433334444444 23999999
Q ss_pred ceeeeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHH
Q psy13776 194 IKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVA 273 (539)
Q Consensus 194 IraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~ 273 (539)
+|+||+|+|||||||++|||++|+|||+|+ .+|+||...
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll-~~Ia~~i~~---------------------------------------- 201 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTIL-KEIANGIAE---------------------------------------- 201 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHH-HHHHHHHHH----------------------------------------
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHH-HHHHHHHhh----------------------------------------
Confidence 999999999999999999999999999999 789988753
Q ss_pred hhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecC
Q psy13776 274 YRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDD 353 (539)
Q Consensus 274 ~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~Ds 353 (539)
++++++|||++||||++||++|++++++ +||++|+|+||.+|+++||+||++||||||+|+|||++|||
T Consensus 202 ----~~~dv~~V~~lIGER~~EV~d~~~~~~G-------~VV~atadep~~~r~~~a~~altiAEyfrd~G~dVLil~Ds 270 (427)
T 3l0o_A 202 ----NHPDTIRIILLIDERPEEVTDIRESTNA-------IVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDS 270 (427)
T ss_dssp ----HCTTSEEEEEECSCCHHHHSSSSSSCCS-------EEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ----cCCCeEEEEEEeccCcchHHHHHHHhCC-------eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 1235789999999999999999999972 89999999999999999999999999999999999999999
Q ss_pred hhHHHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEee-CCCcCCcccccccccccee
Q psy13776 354 LSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQ-AGDVSAYIPTNVISITDGQ 432 (539)
Q Consensus 354 lTr~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~-~~D~s~pIp~~~~sitDGq 432 (539)
+||||+||||+|+++||||+ .||||++|+.+++++|||++++ ++||||++|||+++ +||++|||||++++|+|||
T Consensus 271 lTR~A~A~rEvs~~~Ge~~s-~Gypp~~~~~~~~~~erA~~ie---~~GSIT~i~tvlvetgdd~~dpI~d~~~~i~dg~ 346 (427)
T 3l0o_A 271 LTRLARVYNIVVPPSGKLLT-GGVDPAALYKPKRFFGAARNTR---EGGSLTIIATALVETGSKMDEVIFEEFKGTGNME 346 (427)
T ss_dssp HHHHHHHHHHHSCCCSCCCS-SSCCSSCSHHHHHHHHTCEEES---SSCEEEEEEEEECSSSCSHHHHHHHHTTTCCSEE
T ss_pred chHHHHHHHHHHHhcCCCCC-CCcCchhhcchHHHHHhhcccC---CCcceeEEEEEEecCCCCcCCcchHHhcccCCce
Confidence 99999999999999999999 6999999999999999999975 58999999999999 8999999999999999999
Q ss_pred EEeehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchh
Q psy13776 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAA 512 (539)
Q Consensus 433 IvLsr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~ 512 (539)
|+|||+||++| +|||||++.|+||+++.+
T Consensus 347 IvLsR~La~~g---------------------------------------------------iyPAIDvl~S~SR~~~~l 375 (427)
T 3l0o_A 347 LVLSRQLANKR---------------------------------------------------IFPAINLLLSGTRREELL 375 (427)
T ss_dssp EEBCHHHHTTT---------------------------------------------------CSSCBCSTTCEETTGGGT
T ss_pred EEEeHHHHhCC---------------------------------------------------CCCccCcccccccccccc
Confidence 99999999999 799999999999999999
Q ss_pred hhHHH-HHhhhhhhHHHHHHHhhhh
Q psy13776 513 QTRAM-KQTGKIRSWNGWLSLLKQL 536 (539)
Q Consensus 513 ~~~~~-~~~~~~r~~~~~~~~~~~~ 536 (539)
++++| +.+..+|+ +|+.|++.
T Consensus 376 ~~~~h~~~a~~lr~---~la~y~e~ 397 (427)
T 3l0o_A 376 LDEETLKKVWLLRR---MLSAMTEE 397 (427)
T ss_dssp SCHHHHHHHHHHHH---HHTTSCHH
T ss_pred CCHHHHHHHHHHHH---HHHhcchH
Confidence 99999 77888999 88888765
No 16
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=1.7e-69 Score=568.63 Aligned_cols=294 Identities=16% Similarity=0.206 Sum_probs=248.0
Q ss_pred CcCCCCCCEEEEecccccccCCCcccceeE-ee--eccCCC------CCcccchhcccccccccccc--cccccccccee
Q psy13776 128 VISITDGQIFLETELFYKVDRGSINCGQLI-IG--DRQTGK------TALAIDTIINQKRKKRRRLL--KYNLLSAGIKA 196 (539)
Q Consensus 128 ~~gi~~G~~V~~tg~~~~VpVG~~LLGRVv-lG--~PiDgk------~~i~~~~~~~~~~~~r~ri~--~~epl~TGIra 196 (539)
..+++.||.|...-++.+ -++ |++ +- +++++. +.+.++...+..|..+..+. ..+|++||+|+
T Consensus 91 ~~~lr~gd~v~g~~r~~~--~~E----R~faLl~v~~vn~~~pe~~~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGira 164 (422)
T 3ice_A 91 RFNLRTGDTISGKIRPPK--EGE----RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARV 164 (422)
T ss_dssp HHTCCTTCEEEEEEECCC--SSC----CSEEEEEEEEESSSCHHHHTTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHH
T ss_pred hcCCCCCCEEEEEEeCCC--ccc----hHHHHhccCcccCCChhhhcCCceeccccccCCCCccccccCCCCccccccee
Confidence 468899999988766543 223 333 11 233332 22223222222233333331 01899999999
Q ss_pred eeeeeeccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhh
Q psy13776 197 VDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276 (539)
Q Consensus 197 ID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~ 276 (539)
||.++|||+|||++|||++|+|||+|+ .+|+++...
T Consensus 165 ID~~~pi~rGQr~~IvG~sG~GKTtLl-~~Iar~i~~------------------------------------------- 200 (422)
T 3ice_A 165 LDLASPIGRGQRGLIVAPPKAGKTMLL-QNIAQSIAY------------------------------------------- 200 (422)
T ss_dssp HHHHSCCBTTCEEEEECCSSSSHHHHH-HHHHHHHHH-------------------------------------------
T ss_pred eeeeeeecCCcEEEEecCCCCChhHHH-HHHHHHHhh-------------------------------------------
Confidence 999999999999999999999999998 456655432
Q ss_pred cccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhH
Q psy13776 277 DEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSK 356 (539)
Q Consensus 277 ~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr 356 (539)
++++++|||++||||++||++|++.++ ++||++|+|+||.+|+++|++|+++||||||+|+|||+++||+||
T Consensus 201 -~~~~v~~I~~lIGER~~Ev~~~~~~~~-------~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 201 -NHPDCVLMVLLIDERPEEVTEMQRLVK-------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp -HCTTSEEEEEEESSCHHHHHHHHTTCS-------SEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred -cCCCeeEEEEEecCChHHHHHHHHHhC-------eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 123578999999999999999998883 699999999999999999999999999999999999999999999
Q ss_pred HHHHhHHhhhccCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEee-CCCcCCccccccccccceeEEe
Q psy13776 357 QAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQ-AGDVSAYIPTNVISITDGQIFL 435 (539)
Q Consensus 357 ~A~A~Reisl~lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~-~~D~s~pIp~~~~sitDGqIvL 435 (539)
||+||||+|+++||||+ +||||++|+.++||+|||+++. ++||||++|||++| +||++|||||++++|+||||+|
T Consensus 273 ~A~A~revs~~~Ge~ps-~Gyp~~~~~~~~rl~erA~~~~---~~GSIT~i~tvlv~tgdd~~dpI~d~~~~i~dg~ivL 348 (422)
T 3ice_A 273 LARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 348 (422)
T ss_dssp HHHHHHHHSCCSSCBCS-SSCBHHHHHHHHHHHTTCEEES---SSCEEEEEEEECCSSSCHHHHHHHHHHHHHCSEEEEB
T ss_pred HHHHHHHHHHhcCCCCC-CCcCHHHHhhhHHHHHhccccC---CCcceeEEEEEEecCCCcccchHHHHhcccCCceEEE
Confidence 99999999999999998 9999999999999999999974 58999999999999 8899999999999999999999
Q ss_pred ehhHHhccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhH
Q psy13776 436 ETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTR 515 (539)
Q Consensus 436 sr~La~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~ 515 (539)
||+||++| +|||||++.|+||+++.++++
T Consensus 349 sR~La~~g---------------------------------------------------iyPAIDvl~S~SR~~~~~~~~ 377 (422)
T 3ice_A 349 SRKIAEKR---------------------------------------------------VFPAIDYNRSGTRKEELLTTQ 377 (422)
T ss_dssp CHHHHHTT---------------------------------------------------CSSCBCTTTCEESSGGGSSCH
T ss_pred cHHHHhcC---------------------------------------------------CCCccCccccccccchhhCCH
Confidence 99999999 799999999999999999999
Q ss_pred HH-HHhhhhhhHHHHHHHhhhhh
Q psy13776 516 AM-KQTGKIRSWNGWLSLLKQLY 537 (539)
Q Consensus 516 ~~-~~~~~~r~~~~~~~~~~~~~ 537 (539)
+| +.+..+|+ +|+.|+++.
T Consensus 378 ~~~~~a~~lr~---~la~~~e~~ 397 (422)
T 3ice_A 378 EELQKMWILRK---IIHPMGEID 397 (422)
T ss_dssp HHHHHHHHHHH---HHTTSCHHH
T ss_pred HHHHHHHHHHH---HHHhCchHH
Confidence 99 77888999 888887753
No 17
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=4e-55 Score=467.36 Aligned_cols=351 Identities=23% Similarity=0.306 Sum_probs=299.5
Q ss_pred ccCceeeecCCe----eEEccchhhhhcccccccC-------CeEEEEEeccccCCCcEEEEcccCCcCCCCCCEEEEec
Q psy13776 73 RPPGREAYPGDV----FYLHSRLLERSAKMSEAHG-------GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETE 141 (539)
Q Consensus 73 e~~G~v~~IGDg----~gL~~~~~~~~gEVV~f~~-------g~~G~vl~l~~~~~d~v~l~~~g~~~gi~~G~~V~~tg 141 (539)
...|.+.+|.+. .++ ++ ..+|++.|.. ...|+|+++++ |.+.+++|+++.|+++|+.|++|+
T Consensus 8 ~~~g~v~~v~g~~~~~~~~-~~---~~~e~~~~~~~~~~~~~~~~~ev~~~~~---~~~~~~~~~~~~gl~~g~~v~~~~ 80 (438)
T 2dpy_A 8 RRYGRLTRATGLVLEATGL-QL---PLGATCIIERQDGPETKEVESEVVGFNG---QRLFLMPLEEVEGILPGARVYARN 80 (438)
T ss_dssp CCCEEEEECSSSSEEEESC-CC---CSSCEEEEEECSTTSCEEEEEEEEECCT---TCEEEEESSCCTTCCTTEEEEEC-
T ss_pred ceeeEEEEEECcEEEEEeC-CC---CCCCEEEEecCCCCccccEEEEEEEEcC---CEEEEEEccCCCCCCCCCEEEECC
Confidence 345666666555 222 23 5666666632 25688888777 999999999999999999999999
Q ss_pred c-------cccccCCCcccceeE--eeeccCCCCCcccchhcc---cc--ccccccccccccccccceeeeeeeeccccc
Q psy13776 142 L-------FYKVDRGSINCGQLI--IGDRQTGKTALAIDTIIN---QK--RKKRRRLLKYNLLSAGIKAVDSLVPIGRGQ 207 (539)
Q Consensus 142 ~-------~~~VpVG~~LLGRVv--lG~PiDgk~~i~~~~~~~---~~--~~~r~ri~~~epl~TGIraID~l~pIGrGQ 207 (539)
+ ++++|+|+++||||+ +|+|+|+++++......+ .+ +..+..+ +.++.||+++||.++||++||
T Consensus 81 ~~~~~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~~l~~~~v--~~~~~tg~~vld~vl~i~~Gq 158 (438)
T 2dpy_A 81 GHGDGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPI--EHVLDTGVRAINALLTVGRGQ 158 (438)
T ss_dssp ---------CEEECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCCTTTSCCC--CSBCCCSCHHHHHHSCCBTTC
T ss_pred CccccccccEEEEcchhhhhhhhhccCCccCCCCCccccccccccCCCCCceEEecc--ceecCCCceEEeeeEEecCCC
Confidence 9 999999999999999 999999988875443222 11 2223333 889999999999999999999
Q ss_pred eeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEE
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYV 287 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~ 287 (539)
+++|+|++|+|||||+ .+|+++... + ..+|.
T Consensus 159 ~~~IvG~sGsGKSTLl-~~Iag~~~~---------------------~---------------------------~G~i~ 189 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLL-GMMARYTRA---------------------D---------------------------VIVVG 189 (438)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHHSCC---------------------S---------------------------EEEEE
T ss_pred EEEEECCCCCCHHHHH-HHHhcccCC---------------------C---------------------------eEEEE
Confidence 9999999999999996 888877532 1 35778
Q ss_pred eeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhc
Q psy13776 288 AIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLL 367 (539)
Q Consensus 288 ~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~ 367 (539)
++|+|+++++++.+++.+.+.+++++.+++++++++..++.+++.++++||||++++++|+.++|++++|+.++|+++++
T Consensus 190 ~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA 269 (438)
T 2dpy_A 190 LIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA 269 (438)
T ss_dssp EESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH
T ss_pred EeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH
Confidence 89999999999998776666788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCC
Q psy13776 368 LRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALN 447 (539)
Q Consensus 368 lgepP~r~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~ 447 (539)
+++||.+.|||++.|+.+.+++||+++.. ..+||||++++|++.++|+++|++|++++++||||++++++++.+
T Consensus 270 l~~p~~t~glD~~~~~~l~~ll~r~~~~~--~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~---- 343 (438)
T 2dpy_A 270 IGEPPATKGYPPSVFAKLPALVERAGNGI--HGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAG---- 343 (438)
T ss_dssp TTCCCCSSSCCTTHHHHHHHHHTTCSCCS--TTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHHHHHTT----
T ss_pred hCCCcccccCCHHHHHHHHHHHHHHHhcc--CCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCCHHHcc----
Confidence 99999999999999999999999998721 125999999999999999999999999999999999999999999
Q ss_pred CCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhH
Q psy13776 448 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSW 526 (539)
Q Consensus 448 l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~ 526 (539)
+|||||+..|+||+++.+++++| +.+.++|+
T Consensus 344 -----------------------------------------------~~Paidv~~s~sR~~~~~~~~~~~~~~~~l~~- 375 (438)
T 2dpy_A 344 -----------------------------------------------HYPAIDIEASISRAMTALITEQHYARVRLFKQ- 375 (438)
T ss_dssp -----------------------------------------------CSSCEEEEEEEETTHHHHSCHHHHHHHHHHHH-
T ss_pred -----------------------------------------------CCCCcCCcccccccccccCCHHHHHHHHHHHH-
Confidence 79999999999999999999999 77888888
Q ss_pred HHHHHHhhhhh
Q psy13776 527 NGWLSLLKQLY 537 (539)
Q Consensus 527 ~~~~~~~~~~~ 537 (539)
.|+.|+++.
T Consensus 376 --~l~~~~~~~ 384 (438)
T 2dpy_A 376 --LLSSFQRNR 384 (438)
T ss_dssp --HHHHHHHGG
T ss_pred --HHHhhHHHH
Confidence 777777753
No 18
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=1.4e-54 Score=450.59 Aligned_cols=284 Identities=27% Similarity=0.374 Sum_probs=254.8
Q ss_pred cccccCCCcccceeE--eeeccCCCC-Ccccchhccc---c--ccccccccccccccccceeeeeeeeccccceeeeecc
Q psy13776 143 FYKVDRGSINCGQLI--IGDRQTGKT-ALAIDTIINQ---K--RKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGD 214 (539)
Q Consensus 143 ~~~VpVG~~LLGRVv--lG~PiDgk~-~i~~~~~~~~---~--~~~r~ri~~~epl~TGIraID~l~pIGrGQR~lI~g~ 214 (539)
+++||||++|||||+ +|+|+||++ ++......+. + +..+..+ ++++.||+++||.++||++||+++|||+
T Consensus 2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l--~~~~~tg~~ald~ll~i~~Gq~~gIiG~ 79 (347)
T 2obl_A 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVI--DQPFILGVRAIDGLLTCGIGQRIGIFAG 79 (347)
T ss_dssp CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCC--CSEECCSCHHHHHHSCEETTCEEEEEEC
T ss_pred CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeeccc--ceecCCCCEEEEeeeeecCCCEEEEECC
Confidence 578999999999999 999999998 7765443321 1 2233333 8899999999999999999999999999
Q ss_pred CCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhhcccCceEEEEEeeccchh
Q psy13776 215 RQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRS 294 (539)
Q Consensus 215 ~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ 294 (539)
+|+|||||+ .+|+++... ...+|.++||+.+
T Consensus 80 nGaGKTTLl-~~I~g~~~~------------------------------------------------~~g~i~~~G~~~~ 110 (347)
T 2obl_A 80 SGVGKSTLL-GMICNGASA------------------------------------------------DIIVLALIGERGR 110 (347)
T ss_dssp TTSSHHHHH-HHHHHHSCC------------------------------------------------SEEEEEEESCCHH
T ss_pred CCCCHHHHH-HHHhcCCCC------------------------------------------------CEEEEEEecccHH
Confidence 999999996 888877532 1467888999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHCCCcEEEEecChhHHHHHhHHhhhccCCCCCC
Q psy13776 295 TVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 374 (539)
Q Consensus 295 ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~GkdVLli~DslTr~A~A~Reisl~lgepP~r 374 (539)
|+++++.. .+.+.+++++++++++++|+..|+.+++.++++||||+++|+||++++|++++|+.++|++++++++||.+
T Consensus 111 ev~~~i~~-~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t 189 (347)
T 2obl_A 111 EVNEFLAL-LPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDVR 189 (347)
T ss_dssp HHHHHHTT-SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCB
T ss_pred HHHHHHHh-hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHcCCCCcc
Confidence 99999877 33356889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhchhHHHHhhhcccCCCCCccceeeeEEEeeCCCcCCccccccccccceeEEeehhHHhccCcCCCCCCCcc
Q psy13776 375 EAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVG 454 (539)
Q Consensus 375 ~gyPg~vf~~~srLlERag~~~~~~g~GSITal~~v~~~~~D~s~pIp~~~~sitDGqIvLsr~La~~g~~~~l~~~~~~ 454 (539)
.||||++|+.+.+|+||+++. ++||||++++|+++++|+++||+|++++|+||||+|++++++.+
T Consensus 190 ~Gldp~~~~~l~~ller~~~~----~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Ivl~~~l~~~~----------- 254 (347)
T 2obl_A 190 GGFPPSVFSSLPKLLERAGPA----PKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTRELAEEN----------- 254 (347)
T ss_dssp TTBCHHHHHHHHHHHTTCEEC----SSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEEBCHHHHTTT-----------
T ss_pred cCCCHHHHHHHHHHHHHHhCC----CCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEEEeCCHHHcC-----------
Confidence 999999999999999999862 36999999999999999999999999999999999999999999
Q ss_pred cEEecccccccccceeeeccceeecccccccchhhccccCCCccccccccccccCchhhhHHH-HHhhhhhhHHHHHHHh
Q psy13776 455 VVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSWNGWLSLL 533 (539)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~v~~s~sr~~~~~~~~~~-~~~~~~r~~~~~~~~~ 533 (539)
+|||||++.|+||+++.+++++| +.+.++|+ +|+.|
T Consensus 255 ----------------------------------------~~Paid~~~S~sr~~~~~~~~~~~~~~~~~~~---~l~~~ 291 (347)
T 2obl_A 255 ----------------------------------------HFPAIDIGLSASRVMHNVVTSEHLRAAAECKK---LIATY 291 (347)
T ss_dssp ----------------------------------------CSSCBCGGGCEETTHHHHSCHHHHHHHHHHHH---HHHHC
T ss_pred ----------------------------------------CCCCcCccccccccccccCCHHHHHHHHHHHH---HHHcc
Confidence 79999999999999999999999 67888888 78888
Q ss_pred hhh
Q psy13776 534 KQL 536 (539)
Q Consensus 534 ~~~ 536 (539)
+++
T Consensus 292 ~~~ 294 (347)
T 2obl_A 292 KNP 294 (347)
T ss_dssp CCT
T ss_pred HHH
Confidence 775
No 19
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=98.51 E-value=2e-08 Score=108.78 Aligned_cols=55 Identities=56% Similarity=0.831 Sum_probs=53.2
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRP 497 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~P 497 (539)
.|.++||+.+++++++||+.+.|++|+.|++||++++||||+++||||+|+|| .|
T Consensus 60 ~g~v~~l~~d~v~~~~~~~~~gi~~G~~V~~tg~~~~VpvG~~lLGRV~d~lG-~P 114 (513)
T 3oaa_A 60 YAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLG-AP 114 (513)
T ss_dssp EEEEEEECSSCEEEEESSCCSSCCTTCEEECCSCSSEEECSGGGTTCEEETTS-CB
T ss_pred EEEEEEeeCCEEEEEEeCCccCCCCCCEEEEcCCCCeEeeCHHHhccchhhcC-cC
Confidence 58999999999999999999999999999999999999999999999999999 44
No 20
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=98.39 E-value=7.6e-08 Score=104.48 Aligned_cols=55 Identities=91% Similarity=1.382 Sum_probs=53.0
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRP 497 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~P 497 (539)
.|.++||+.+++++++||+...|++||.|++||++++||||+++||||+|+|| .|
T Consensus 60 ~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLGRVvd~lG-~P 114 (510)
T 2ck3_A 60 KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALG-NA 114 (510)
T ss_dssp EEEEEEECSSCEEEEESSCGGGCCTTCEEEECCCCCEEEESGGGTTCEECTTS-CB
T ss_pred eEEEEeccCCeEEEEEECCcccccCCCEEEEeCCcceeecCccceeeEEccCC-cC
Confidence 48899999999999999999999999999999999999999999999999999 55
No 21
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=98.36 E-value=1.2e-07 Score=103.03 Aligned_cols=55 Identities=58% Similarity=1.025 Sum_probs=52.9
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRP 497 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~P 497 (539)
.|.++||+.+++++++||+...+++||.|++||++++||||+++||||+|+|| .|
T Consensus 73 ~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG-~P 127 (515)
T 2r9v_A 73 KGVAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLG-EP 127 (515)
T ss_dssp EEEEEECCTTCEEEEEESCCTTCCTTCEEEEEEEECEEEESGGGTTCEECTTS-CB
T ss_pred EEEEEEecCCeEEEEEecCcccccCCCEEEEeCCcceeecCccceeeEEcCCC-CC
Confidence 48899999999999999999999999999999999999999999999999999 44
No 22
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=98.35 E-value=8.6e-08 Score=104.01 Aligned_cols=55 Identities=55% Similarity=0.932 Sum_probs=53.0
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRP 497 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~P 497 (539)
.|.++||+.+++++++||+...+++|+.|++||++++||||+++||||+|+|| .|
T Consensus 61 ~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG-~P 115 (507)
T 1fx0_A 61 IGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALA-KP 115 (507)
T ss_dssp EEEEEEECSSEEEEEECSCGGGCCTTCEEECCCCCCEEEESSSCSSCCCCSSS-CC
T ss_pred eEEEEeccCCeEEEEEecCccCCcCCCEEEEeCCcceeecCccceeEEEccCC-cC
Confidence 48899999999999999999999999999999999999999999999999999 55
No 23
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=98.33 E-value=1e-07 Score=103.32 Aligned_cols=55 Identities=65% Similarity=1.012 Sum_probs=53.0
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRP 497 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~P 497 (539)
.|.++||+.+++++++||+...+++||.|++||++++||||+++||||+|+|| .|
T Consensus 60 ~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG-~P 114 (502)
T 2qe7_A 60 MGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLG-QP 114 (502)
T ss_dssp EEEEEEEETTEEEEEECSCCSSCCTTCEEEEEEEESEEECSGGGTTCEECTTC-CB
T ss_pred EEEEEEecCCeEEEEEecCccCCcCCCEEEEeCCcceEEcccccceEEEccCC-CC
Confidence 48899999999999999999999999999999999999999999999999999 55
No 24
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=97.98 E-value=1.2e-06 Score=94.14 Aligned_cols=55 Identities=18% Similarity=0.398 Sum_probs=52.7
Q ss_pred ccCcCCCCCCCcccEEeccccccc-ccceeeeccceeecccccccchhhccccCCCc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIK-EGDIVKRTGAIVDVPVGEDLLGRVVDALGIRP 497 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~P 497 (539)
.|.+++++.+++++++||+...++ +|+.|+.||+.++||||+++||||+|+|| .|
T Consensus 44 ~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg~~lLGRV~d~lG-~P 99 (464)
T 3gqb_B 44 GGQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIG-KP 99 (464)
T ss_dssp EEEEEEEESSEEEEEESSCCTTCCSSSCEEEEEESSCEEEECSTTTTEEEETTC-CB
T ss_pred EEEEEEEeCCeEEEEEecCccccccCCCEEEECCCCcEEEeChHhcCCEeccCC-cc
Confidence 588999999999999999999999 99999999999999999999999999999 54
No 25
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=97.95 E-value=1.6e-06 Score=93.20 Aligned_cols=56 Identities=34% Similarity=0.586 Sum_probs=53.0
Q ss_pred ccCcCCCCCCCcccEEeccccccc-ccceeeeccceeecccccccchhhccccCCCcc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIK-EGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPA 498 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pa 498 (539)
.|.+++++.+++++.+||+...+. +|+.|++||+.++||||+++||||+|+|| .|-
T Consensus 48 ~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg~~lLGRV~d~lG-~Pi 104 (465)
T 3vr4_D 48 RGQVLEVQEDKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLG-RPK 104 (465)
T ss_dssp EEEEEEEESSEEEEEETTCCTTCCTTTCEEEECSSCCEEEECGGGTTEEEETTS-CBC
T ss_pred EEEEEEEeCCeEEEEEecCccccccCCCEEEECCCcceeecchhhccceeccCC-ccc
Confidence 588899999999999999999999 99999999999999999999999999999 553
No 26
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=97.90 E-value=1.9e-06 Score=92.86 Aligned_cols=56 Identities=32% Similarity=0.460 Sum_probs=40.3
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPA 498 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pa 498 (539)
.|.+++++.+++.+++|++...+.+|+.|++||+.++||||+++||||+|+|| .|-
T Consensus 50 ~geV~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~vpvg~~lLGRV~d~lG-~Pi 105 (469)
T 2c61_A 50 RGQVLDSSADIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSG-EPR 105 (469)
T ss_dssp EEEEEEECSSEEEEEEC-------------CEEEBCEEEECGGGTTCEEETTS-CBS
T ss_pred EEEEEEEeCCEEEEEEeCCCcCCCCCCEEEEcCCCcEEEccccceeeEEcccC-CCC
Confidence 47889999999999999999999999999999999999999999999999999 554
No 27
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=97.88 E-value=2.3e-06 Score=93.89 Aligned_cols=59 Identities=29% Similarity=0.427 Sum_probs=31.3
Q ss_pred hccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 441 YKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 441 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
-.|.+++++.|++++.++++.+.+++||.|++||+.++||||+++||||+|+|| +|--+
T Consensus 36 l~geVi~l~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG~gLLGrV~Dglg-rPLd~ 94 (588)
T 3mfy_A 36 LIGEIIRLEGDKAVIQVYEETAGVRPGEPVVGTGASLSVELGPRLLTSIYDGIQ-RPLEV 94 (588)
T ss_dssp -------------------------CCCCCSSSSSCCEEEESTTCTTCEEETTC-CSSSS
T ss_pred eEEEEEEecCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeCHHHHhhccCCCC-CcccC
Confidence 358899999999999999999999999999999999999999999999999999 66433
No 28
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.59 E-value=1.6e-05 Score=85.96 Aligned_cols=56 Identities=27% Similarity=0.510 Sum_probs=50.4
Q ss_pred cCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 443 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
.+..|++.+.+..++|++...++.|+.|+.||+.++||||+++||||+|+|| .|--
T Consensus 52 eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpvG~~lLGRV~d~lG-~PiD 107 (482)
T 2ck3_D 52 EVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIG-EPID 107 (482)
T ss_dssp EEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCEEECSGGGBTCEECTTS-CBCS
T ss_pred EEeEEecCCeEEEEeccCccCCCCCCEEEEcCCcceeeccccccCCEEcccC-cCcC
Confidence 3455678889999999999999999999999999999999999999999999 5543
No 29
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.59 E-value=1.6e-05 Score=85.72 Aligned_cols=56 Identities=38% Similarity=0.531 Sum_probs=50.4
Q ss_pred cCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCccc
Q psy13776 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAI 499 (539)
Q Consensus 443 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai 499 (539)
.+..|++.+.+.+++|++...++.||.|+.||+.++||||+++||||+|+|| .|--
T Consensus 49 ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~~~vpvg~~llGrv~d~lG-~piD 104 (473)
T 1sky_E 49 EVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLG-EPID 104 (473)
T ss_dssp EEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEECEEECSGGGTTCEECTTS-CBCS
T ss_pred EEeEEecCCcEEEEEecCccCCCCCCEEEEcCCcceeeccccceeeEEeecC-CccC
Confidence 3445678889999999999999999999999999999999999999999999 5543
No 30
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=97.59 E-value=2.1e-05 Score=85.25 Aligned_cols=55 Identities=33% Similarity=0.473 Sum_probs=50.8
Q ss_pred cCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcc
Q psy13776 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPA 498 (539)
Q Consensus 443 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pa 498 (539)
.++.+++.+.+..++|++...+..|+.|+.||+.++||||+++||||+|+|| .|-
T Consensus 64 eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpvG~~lLGRV~d~lG-~Pi 118 (498)
T 1fx0_B 64 EVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLG-EPV 118 (498)
T ss_dssp EEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSCEEEESSTTTTCEECTTS-CBC
T ss_pred EEEEEecCCeEEEEEecCccCCCCCCEEEecCCcceEecCccceeeEEcccc-cCC
Confidence 4556789999999999999999999999999999999999999999999999 553
No 31
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=97.51 E-value=1.9e-05 Score=86.56 Aligned_cols=58 Identities=28% Similarity=0.412 Sum_probs=53.7
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.|.+++++.|++.+.++++.+.+..|+.|++||+.++||||+++||||+|+|| +|--+
T Consensus 36 ~gEVi~~~~d~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~lLGrV~DglG-~PlD~ 93 (578)
T 3gqb_A 36 VGEIIRLDGDTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGMLNGIYDGIQ-RPLER 93 (578)
T ss_dssp EEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEESEEEESTTCTTCEECTTS-CBHHH
T ss_pred EEEEEEEcCCcEEEEEcCCCCCCCCCCEEEECCCCCEEEeCHHHhhhhhCcCC-Ccccc
Confidence 47788999999999999999999999999999999999999999999999999 66433
No 32
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=97.50 E-value=1.9e-05 Score=86.89 Aligned_cols=58 Identities=22% Similarity=0.446 Sum_probs=53.6
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccceeecccccccchhhccccCCCcccc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAIN 500 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~v~~~lg~~Pai~ 500 (539)
.|.+++++.|++.+.+|++.+.+..|+.|++||+.++||||+++||||+|+|| +|--+
T Consensus 43 ~gEVi~~~~d~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~~lLGrV~DglG-rPlD~ 100 (600)
T 3vr4_A 43 IGEIIEMRQDVASIQVYEETSGIGPGEPVRSTGEALSVELGPGIISQMFDGIQ-RPLDT 100 (600)
T ss_dssp EEEEEEEETTEEEEEESSCCTTCCTTCEEEECSSSSEEEESTTCTTCEECTTC-CBHHH
T ss_pred EEEEEEEcCCcEEEEEccCCCCCCCCCEEEECCCCCEEEeCHHHHhhhhCcCC-Ccccc
Confidence 47788999999999999999999999999999999999999999999999999 66433
No 33
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.48 E-value=0.0006 Score=64.44 Aligned_cols=44 Identities=30% Similarity=0.447 Sum_probs=38.0
Q ss_pred cccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 187 YNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 187 ~epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-+-+.||+..+|-++. +-+|+-..|.|++|+|||++++..+.|.
T Consensus 9 i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 9 VRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp CCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3457899999999996 8899999999999999999997666554
No 34
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.21 E-value=0.0001 Score=78.53 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=49.4
Q ss_pred ccCcCCCCCCCcccEEecccccccccceeeeccc-------eeecccccccchhhccccCCCcc
Q psy13776 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGA-------IVDVPVGEDLLGRVVDALGIRPA 498 (539)
Q Consensus 442 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~-------~~~~~~~~~~l~~v~~~lg~~Pa 498 (539)
.|.+++++.+++.+++||+...+..|+.|+.||. .++||+|+++||||+|+|| .|.
T Consensus 48 ~~ev~~~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~~~~~~~~~v~~g~~~lgrv~~~lg-~p~ 110 (438)
T 2dpy_A 48 ESEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVLDGGG-KPL 110 (438)
T ss_dssp EEEEEECCTTCEEEEESSCCTTCCTTEEEEEC----------CEEECSGGGTTEEECTTC-CBS
T ss_pred EEEEEEEcCCEEEEEEccCCCCCCCCCEEEECCCccccccccEEEEcchhhhhhhhhccC-Ccc
Confidence 4677889999999999999999999999999999 9999999999999999999 553
No 35
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.03 E-value=0.00099 Score=68.86 Aligned_cols=42 Identities=10% Similarity=0.252 Sum_probs=35.8
Q ss_pred ccccccceeeeeeee------ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 188 NLLSAGIKAVDSLVP------IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 188 epl~TGIraID~l~p------IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.+.||+..+|.++. +-+| +..|+|++|+|||+|++..+.+.
T Consensus 5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999988 7789 99999999999999998666543
No 36
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.71 E-value=0.0014 Score=60.97 Aligned_cols=38 Identities=37% Similarity=0.497 Sum_probs=33.7
Q ss_pred ccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHH
Q psy13776 190 LSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 190 l~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+.||+..+|-++. +-+|+-.+|.|++|+||||++. .++
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~-~l~ 41 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL-QTG 41 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH-HHH
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH-HHH
Confidence 5799999999985 8999999999999999999984 444
No 37
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.66 E-value=0.0024 Score=66.00 Aligned_cols=43 Identities=26% Similarity=0.458 Sum_probs=36.3
Q ss_pred cccccccceeeeeeee---ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLVP---IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~p---IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.+.||+..+|.++. +-+|.-..|+|++|+|||||++..+.+
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999886 558999999999999999999654443
No 38
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.56 E-value=0.0022 Score=66.77 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=35.9
Q ss_pred cccccccceeeeeeee---ccccceeeeeccCCCCchHhHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLVP---IGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 187 ~epl~TGIraID~l~p---IGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.+.+.||+..+|-++. +-+|.-..|+|++|+|||||++..+.
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999987 67899999999999999999964443
No 39
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.41 E-value=0.014 Score=59.66 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=36.9
Q ss_pred cccccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.+.||+..+|-++ -+-+|+-..|+|++|+|||++++....+
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 567889999999998 4779999999999999999999654443
No 40
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.38 E-value=0.016 Score=58.14 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=36.6
Q ss_pred cccccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
...+.||+..+|-++ -+-+|+-..|+|++|+|||++++....+
T Consensus 77 ~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999998 5778999999999999999999755543
No 41
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.38 E-value=0.0037 Score=64.81 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=36.7
Q ss_pred cccccccceeeeeeee---ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLVP---IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~p---IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.+.||+..+|-++. +-+|+-+.|.|++|+|||+|++..+.+
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999986 669999999999999999999654443
No 42
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.33 E-value=0.0044 Score=62.72 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=36.7
Q ss_pred cccccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
...+.||+..+|.++ -+-+|+-..|+|++|+|||++++....+
T Consensus 86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 567889999999998 5778999999999999999999654443
No 43
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.29 E-value=0.0045 Score=64.50 Aligned_cols=43 Identities=30% Similarity=0.435 Sum_probs=36.8
Q ss_pred cccccccceeeeeeee---ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLVP---IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~p---IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+|++..+.+
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 5678999999999986 558999999999999999999765544
No 44
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.18 E-value=0.0012 Score=61.77 Aligned_cols=42 Identities=31% Similarity=0.409 Sum_probs=36.0
Q ss_pred cccccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
-+.+.||+..+|-++ .+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 4 ~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll-~~l~g 47 (231)
T 4a74_A 4 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAV 47 (231)
T ss_dssp CCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHH-HHHHH
T ss_pred CCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH-HHHHH
Confidence 356889999999877 6889999999999999999998 45553
No 45
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.11 E-value=0.0017 Score=61.39 Aligned_cols=41 Identities=32% Similarity=0.501 Sum_probs=35.9
Q ss_pred cccccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 187 ~epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
-+.+.||+..+|-++ .+-+|+-.+|+|++|+|||||+ .+|+
T Consensus 9 ~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl-~~i~ 51 (251)
T 2ehv_A 9 VRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFA-AQFI 51 (251)
T ss_dssp CCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHH-HHHH
T ss_pred cceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHH-HHHH
Confidence 456789999999988 6899999999999999999998 5555
No 46
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.07 E-value=0.0038 Score=58.84 Aligned_cols=42 Identities=29% Similarity=0.394 Sum_probs=34.8
Q ss_pred ccccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 188 NLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 188 epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.+.||++.+|-++ -+-+|+-.+|.|++|+|||++++..+.+
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999986 4678999999999999999998654443
No 47
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.04 E-value=0.0049 Score=57.22 Aligned_cols=40 Identities=35% Similarity=0.449 Sum_probs=34.8
Q ss_pred ccccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHH
Q psy13776 188 NLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 188 epl~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+.+.||++.+|-++. +-+|+-.+|.|++|+|||||+ ..++
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~-~~l~ 44 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFS-LHFI 44 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHH-HHHH
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH-HHHH
Confidence 457899999999984 889999999999999999998 4444
No 48
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.63 E-value=0.03 Score=59.02 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=36.4
Q ss_pred cccccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 187 ~epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
...+.||+..+|-++ -|-+|+-..|+|++|+|||||+...++
T Consensus 157 ~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 157 LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 567899999999998 678999999999999999999954333
No 49
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.59 E-value=0.0035 Score=59.03 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=36.2
Q ss_pred cccccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.+.||+..+|-++ .+-+|+-.+|+|++|+|||||+. +++.
T Consensus 3 ~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~-~l~~ 46 (243)
T 1n0w_A 3 IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICH-TLAV 46 (243)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH-HHHH
T ss_pred ceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH-HHHH
Confidence 456889999999998 58899999999999999999984 4443
No 50
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.03 Score=59.76 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=20.8
Q ss_pred eeeeccCCCCchHhHHHHHHHhhhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKSI 233 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~~ 233 (539)
++++||+|||||.|| ..|++....
T Consensus 218 vLL~GPPGtGKTllA-kAiA~e~~~ 241 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLA-KAVAATIGA 241 (437)
T ss_dssp EEEESCTTSSHHHHH-HHHHHHHTC
T ss_pred EEEECCCCCcHHHHH-HHHHHHhCC
Confidence 689999999999999 788887654
No 51
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.33 E-value=0.065 Score=53.98 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=35.8
Q ss_pred cccccccceeeeeeee-ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLVP-IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~p-IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
...+.||++.+|-++. +-+|+-..|.|.+|+|||++++....+
T Consensus 48 ~~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 48 ITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CCSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3567899999998874 668999999999999999999654444
No 52
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.31 E-value=0.00086 Score=71.12 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=39.9
Q ss_pred ccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhh
Q psy13776 234 YAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276 (539)
Q Consensus 234 ~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~ 276 (539)
+++..++.++|+++++||||+|+|+|+|+++||++++|.||+.
T Consensus 238 ep~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A~A~rE 280 (427)
T 3l0o_A 238 MPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNI 280 (427)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHH
Confidence 5677788899999999999999999999999999999999875
No 53
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.31 E-value=0.015 Score=71.31 Aligned_cols=114 Identities=15% Similarity=0.241 Sum_probs=72.7
Q ss_pred cccccccceeeeeeee---ccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhh
Q psy13776 187 YNLLSAGIKAVDSLVP---IGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALII 263 (539)
Q Consensus 187 ~epl~TGIraID~l~p---IGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i 263 (539)
.+.+.||+..+|-++. +-+|+-.+|+|++|+|||+|++....+....
T Consensus 12 ~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~------------------------------ 61 (1706)
T 3cmw_A 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------------------------------ 61 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT------------------------------
T ss_pred CcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC------------------------------
Confidence 5678999999999975 8889999999999999999996544433211
Q ss_pred hhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHC
Q psy13776 264 YDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN 343 (539)
Q Consensus 264 ~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~ 343 (539)
+-.|+|+..-+..++.. .+.+. . .+++-. +... ...+ ....+.+.+.+.
T Consensus 62 -----------------G~~vlYI~te~~~~~l~--~~~lg-~-dl~~i~-i~~p---~t~e------~l~~ll~~L~~~ 110 (1706)
T 3cmw_A 62 -----------------GKTCAFIDAEHALDPIY--ARKLG-V-DIDNLL-CSQP---DTGE------QALEICDALARS 110 (1706)
T ss_dssp -----------------TCCEEEECTTSCCCHHH--HHHTT-C-CGGGCE-EECC---SSHH------HHHHHHHHHHHH
T ss_pred -----------------CCceEEEEecCccHHHH--HHhhc-c-Ccccee-eecc---CcHH------HHHHHHHHHHhc
Confidence 11477777766555543 22221 0 122222 2221 1111 233455666666
Q ss_pred CCcEEEEecChhHHHHHh
Q psy13776 344 GKHALIIYDDLSKQAVAY 361 (539)
Q Consensus 344 GkdVLli~DslTr~A~A~ 361 (539)
++.-+||+||+|-+....
T Consensus 111 ~~~~LVVIDSLt~L~~~~ 128 (1706)
T 3cmw_A 111 GAVDVIVVDSVAALTPKA 128 (1706)
T ss_dssp TCCSEEEESCSTTCCCHH
T ss_pred cCCCEEEEcchhhhcccc
Confidence 777799999999877643
No 54
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.039 Score=58.90 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=20.9
Q ss_pred eeeeccCCCCchHhHHHHHHHhhhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKSI 233 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~~ 233 (539)
++++||+|||||.|| ..++++...
T Consensus 218 vLLyGPPGTGKTllA-kAiA~e~~~ 241 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLA-RACAAQTNA 241 (434)
T ss_dssp EEEESCTTSSHHHHH-HHHHHHHTC
T ss_pred eEEECcCCCCHHHHH-HHHHHHhCC
Confidence 689999999999999 788887653
No 55
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.79 E-value=0.094 Score=52.15 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=21.8
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.+++-++|.|++|+|||+|+ ..++++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~-~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV-KFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 45778999999999999998 5566543
No 56
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.79 E-value=0.081 Score=52.74 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=21.9
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+.++.++|.|++|+|||+++ ..++++.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~-~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA-RLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH-HHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 56778999999999999998 5566543
No 57
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.73 E-value=0.14 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.++|.|++|+|||+++ ..++++.
T Consensus 46 ~~li~G~~G~GKTtl~-~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL-RKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHH
Confidence 6899999999999998 5566543
No 58
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.086 Score=55.82 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.9
Q ss_pred eeeeccCCCCchHhHHHHHHHhhhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKSI 233 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~~ 233 (539)
++++||+|||||.|| ..++++...
T Consensus 185 vLL~GPPGTGKTllA-kAiA~e~~~ 208 (405)
T 4b4t_J 185 VILYGPPGTGKTLLA-RAVAHHTDC 208 (405)
T ss_dssp EEEESCSSSSHHHHH-HHHHHHHTC
T ss_pred eEEeCCCCCCHHHHH-HHHHHhhCC
Confidence 789999999999999 788887654
No 59
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.58 E-value=0.93 Score=43.12 Aligned_cols=29 Identities=14% Similarity=0.384 Sum_probs=22.7
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+|.-+|.-+.|.|++|+|||||+ ..++..
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~-~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIK-NALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHH-HHHHhh
Confidence 34557889999999999999998 666644
No 60
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.57 E-value=0.12 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=19.3
Q ss_pred ccceeee--eccCCCCchHhHHHHHHHh
Q psy13776 205 RGQRELI--IGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 205 rGQR~lI--~g~~gtGKTtLa~~~I~nq 230 (539)
.++.+.| .|++|+|||+|+ ..++++
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~-~~~~~~ 75 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLA-KFTVKR 75 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHH-HHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHH-HHHHHH
Confidence 4566777 899999999998 555544
No 61
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.52 E-value=0.033 Score=69.28 Aligned_cols=114 Identities=15% Similarity=0.247 Sum_probs=75.6
Q ss_pred cccccccceeeeeeee---ccccceeeeeccCCCCchHhHHHHHHHhhhhccccccccccccCCCccccccccCcchhhh
Q psy13776 187 YNLLSAGIKAVDSLVP---IGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALII 263 (539)
Q Consensus 187 ~epl~TGIraID~l~p---IGrGQR~lI~g~~gtGKTtLa~~~I~nq~~~~~~~~~~la~~~g~~~~e~~~d~~~~~~~i 263 (539)
.+.+.||+..+|-++. +-+|.-..|.|++|+|||++++..+.+....
T Consensus 12 ~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~~~------------------------------ 61 (2050)
T 3cmu_A 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------------------------------ 61 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT------------------------------
T ss_pred CCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhhcc------------------------------
Confidence 5678999999999874 6789999999999999999997655544321
Q ss_pred hhhhhhHHHHhhhcccCceEEEEEeeccchhHHHHHHHHHhcCCCCceEEEEEecCCCChhhhhhhhHHHHHHHHHHHHC
Q psy13776 264 YDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN 343 (539)
Q Consensus 264 ~d~~~~~a~~~~~~~~~~~~~Vy~~IGer~~ev~e~~~~l~~~~~~~~tvvV~atad~~a~~r~~ap~~a~tiAEyFrd~ 343 (539)
+-.|+|+..-+..++.. .+.+ +- .+++-. +..+ + ..+ ....+-+++.+.
T Consensus 62 -----------------Ge~vlYI~tEes~~~~r--a~~l-G~-dl~~i~-v~~p-~--~~e------~ll~il~~L~~~ 110 (2050)
T 3cmu_A 62 -----------------GKTCAFIDAEHALDPIY--ARKL-GV-DIDNLL-CSQP-D--TGE------QALEICDALARS 110 (2050)
T ss_dssp -----------------TCCEEEECTTSCCCHHH--HHHT-TC-CTTTCE-EECC-S--SHH------HHHHHHHHHHHH
T ss_pred -----------------CCceEEEEccCcchhhH--Hhhh-cc-Ccccce-ecCC-C--cHH------HHHHHHHHHHhc
Confidence 12478887776666654 2333 11 123322 3321 1 112 234566677766
Q ss_pred CCcEEEEecChhHHHHHh
Q psy13776 344 GKHALIIYDDLSKQAVAY 361 (539)
Q Consensus 344 GkdVLli~DslTr~A~A~ 361 (539)
+.--+||+||+|-+....
T Consensus 111 ~~~~lVVIDSISaL~~~~ 128 (2050)
T 3cmu_A 111 GAVDVIVVDSVAALTPKA 128 (2050)
T ss_dssp TCCSEEEESCGGGCCCHH
T ss_pred cCCcEEEEcChHHhhhhc
Confidence 777899999999876653
No 62
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.084 Score=56.17 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=20.9
Q ss_pred eeeeccCCCCchHhHHHHHHHhhhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKSI 233 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~~ 233 (539)
+++.||+|||||.|| ..|+++...
T Consensus 209 iLL~GPPGtGKT~la-kAiA~~~~~ 232 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLV-KAVANSTKA 232 (428)
T ss_dssp EEEESCTTTTHHHHH-HHHHHHHTC
T ss_pred EEEECCCCCCHHHHH-HHHHHHhCC
Confidence 789999999999999 788887653
No 63
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.11 Score=55.55 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.0
Q ss_pred eeeeccCCCCchHhHHHHHHHhhhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKSI 233 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~~ 233 (539)
++++|++|||||.|| ..|+++...
T Consensus 219 vLLyGPPGTGKTlLA-kAiA~e~~~ 242 (437)
T 4b4t_I 219 VILYGAPGTGKTLLA-KAVANQTSA 242 (437)
T ss_dssp EEEESSTTTTHHHHH-HHHHHHHTC
T ss_pred CceECCCCchHHHHH-HHHHHHhCC
Confidence 789999999999999 788887654
No 64
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.34 E-value=0.037 Score=67.91 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=38.6
Q ss_pred cccccccceeeeeeee---ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 187 YNLLSAGIKAVDSLVP---IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 187 ~epl~TGIraID~l~p---IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+.+.||+..+|.++. +-+|.-..|.|++|+|||+|++..+.+.
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5678999999999987 7799999999999999999997665544
No 65
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.07 E-value=0.099 Score=55.26 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=36.2
Q ss_pred cccccccceeeeeeee-ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 187 YNLLSAGIKAVDSLVP-IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 187 ~epl~TGIraID~l~p-IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
...+.||+..+|-++. +-+|+-+.|.|++|+|||++++....+.
T Consensus 183 ~~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 183 ITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CCSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999998873 6689999999999999999996544443
No 66
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.83 E-value=0.028 Score=51.10 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=22.4
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.++.+|+.++|+|++|+|||||+ ..++
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~-~~La 30 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIA-EALA 30 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHH-HHHH
T ss_pred ccCCCCCeEEEEECCCCCCHHHHH-HHHH
Confidence 567889999999999999999998 5554
No 67
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.80 E-value=0.15 Score=54.89 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHhhhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQKSI 233 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~~~ 233 (539)
-+++.|++|||||.|| ..|++....
T Consensus 245 GILLyGPPGTGKTlLA-kAiA~e~~~ 269 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCA-RAVANRTDA 269 (467)
T ss_dssp EEEECSCTTSSHHHHH-HHHHHHHTC
T ss_pred ceEeeCCCCCcHHHHH-HHHHhccCC
Confidence 3789999999999999 788887653
No 68
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.70 E-value=0.03 Score=54.85 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=32.7
Q ss_pred cccccccceeeeeeee-ccccceeeeeccCCCCchHhHHH
Q psy13776 187 YNLLSAGIKAVDSLVP-IGRGQRELIIGDRQTGKTALAID 225 (539)
Q Consensus 187 ~epl~TGIraID~l~p-IGrGQR~lI~g~~gtGKTtLa~~ 225 (539)
.+.+.||+..+|-+++ +-+|+-.+|+|++|+|||||+..
T Consensus 10 ~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 10 LEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp HHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHH
T ss_pred HHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHH
Confidence 5667899988887764 44889999999999999999953
No 69
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=93.64 E-value=0.32 Score=48.33 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=33.2
Q ss_pred ccccceeeeeeee--ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 190 LSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 190 l~TGIraID~l~p--IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+.|||..+|-++. +-+|--.+|.|++++|||++++..+.+..
T Consensus 3 i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~ 46 (260)
T 3bs4_A 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKL 46 (260)
T ss_dssp BCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHH
T ss_pred CccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHH
Confidence 5799999999874 33778889999999999999865555443
No 70
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.49 E-value=0.004 Score=66.10 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=39.1
Q ss_pred ccccccccccccCCCccccccccCcchhhhhhhhhhHHHHhhh
Q psy13776 234 YAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276 (539)
Q Consensus 234 ~~~~~~~la~~~g~~~~e~~~d~~~~~~~i~d~~~~~a~~~~~ 276 (539)
+++..++.++++++++||+|+|+|+|+|+++||+.++|.||+.
T Consensus 237 ep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~re 279 (422)
T 3ice_A 237 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT 279 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHH
Confidence 5666777888999999999999999999999999999999875
No 71
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.47 E-value=0.064 Score=66.78 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=38.2
Q ss_pred cccccccceeeeeeee---ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 187 YNLLSAGIKAVDSLVP---IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 187 ~epl~TGIraID~l~p---IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|++..+.+.
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5669999999999987 7899999999999999999997655543
No 72
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.47 E-value=0.04 Score=49.97 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=24.1
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.+.+|+.++|+|++|+|||||+ ..|++..
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~-~~i~~~~ 62 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLA-VATLKAI 62 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHH-HHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4567899999999999999998 6676654
No 73
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.44 E-value=0.13 Score=54.79 Aligned_cols=44 Identities=7% Similarity=0.013 Sum_probs=35.6
Q ss_pred cccccc-cceeeeeeee-ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 187 YNLLSA-GIKAVDSLVP-IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 187 ~epl~T-GIraID~l~p-IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
...+.| |+..+|-++- +-+|+=..|.|++|+|||++++....+.
T Consensus 221 ~~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 221 SVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp TTCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cCCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 346788 9999998874 5578899999999999999997655543
No 74
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.42 E-value=0.2 Score=52.72 Aligned_cols=43 Identities=30% Similarity=0.475 Sum_probs=34.7
Q ss_pred ccccccceeeeeeee-ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 188 NLLSAGIKAVDSLVP-IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 188 epl~TGIraID~l~p-IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
..+.||+..+|-++. +-+|+-..|.|++|+|||++++....|.
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467899999998873 6689999999999999999997655543
No 75
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.97 E-value=0.051 Score=50.41 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=21.2
Q ss_pred ccccceeeeeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 190 l~TGIraID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
++++--..+.+.+..+|+.++|+|++|+||||++ ..+..
T Consensus 13 ~~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~-~~L~~ 51 (200)
T 4eun_A 13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIA-HGVAD 51 (200)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHH-HHHHH
T ss_pred cCchhhHHHhhhcCCCCcEEEEECCCCCCHHHHH-HHHHH
Confidence 4444455677777788999999999999999998 55554
No 76
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.73 E-value=0.034 Score=54.71 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=33.4
Q ss_pred cccccc-cceeeeeee-eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSA-GIKAVDSLV-PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~T-GIraID~l~-pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
..-+.| |+.++|.+. .+-+|+-.+|.|++|+|||||+. .|+.
T Consensus 14 ~~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~-~ia~ 57 (296)
T 1cr0_A 14 SVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVR-QQAL 57 (296)
T ss_dssp CCCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHH-HHHH
T ss_pred cCCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHH-HHHH
Confidence 344668 888888654 67899999999999999999984 4443
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.69 E-value=0.057 Score=50.45 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=22.3
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
++-+|+..+|+|++|+|||||+ .+|+..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl-~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV-RCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 7889999999999999999998 666654
No 78
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.50 E-value=0.036 Score=56.94 Aligned_cols=41 Identities=32% Similarity=0.416 Sum_probs=35.2
Q ss_pred cccccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 187 ~epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.+.+.||+..+|.++ .+-+|+-.+|+|++|+|||||+. +++
T Consensus 110 ~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~-~l~ 152 (349)
T 1pzn_A 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAH-TLA 152 (349)
T ss_dssp CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHH-HHH
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH-HHH
Confidence 467889999999985 57799999999999999999984 444
No 79
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.45 E-value=0.06 Score=51.16 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=21.7
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
=+.+-+|+.++|+|++|+|||||+ .+|+.
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl-~~L~g 45 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLI-KKLLN 45 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHH-HHHHH
T ss_pred ceecCCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 456779999999999999999998 66664
No 80
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.41 E-value=0.062 Score=48.93 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.5
Q ss_pred eeccccceeeeeccCCCCchHhH
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALA 223 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa 223 (539)
+.+.+|+..+|+|++|+|||||+
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHH
Confidence 57789999999999999999998
No 81
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.34 E-value=0.068 Score=48.97 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.2
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+-+|+.++|+|++|+|||||+ .++...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~-~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLV-RALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHH-HHHHhh
Confidence 457999999999999999998 666643
No 82
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.30 E-value=0.39 Score=49.45 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=36.0
Q ss_pred cccccccceeeeeeee-ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLVP-IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~p-IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
-..+.||+..+|-++. +-+|+-+.|.|.+|+|||++++....+
T Consensus 26 ~~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CCSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3567899999998874 778999999999999999999754444
No 83
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.11 E-value=0.077 Score=51.40 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=25.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|.
T Consensus 23 ~isl~i~~Ge~~~iiG~nGsGKSTLl-~~l~ 52 (235)
T 3tif_A 23 NVNLNIKEGEFVSIMGPSGSGKSTML-NIIG 52 (235)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHH-HHHT
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHH-HHHh
Confidence 34578899999999999999999997 5554
No 84
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.90 E-value=0.41 Score=47.96 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=20.6
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.+.-++|.|++|+|||+++ ..++++.
T Consensus 44 ~~~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 3556899999999999998 5666543
No 85
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.88 E-value=0.65 Score=43.94 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=20.4
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
.-++|.|++|||||+++ ..++++..
T Consensus 40 ~~vll~G~~GtGKT~la-~~la~~~~ 64 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLA-KAVATEAQ 64 (262)
T ss_dssp CEEEEESCTTSSHHHHH-HHHHHHHT
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHhC
Confidence 44789999999999998 67776653
No 86
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.85 E-value=0.085 Score=51.14 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=25.5
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 23 ~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 52 (237)
T 2cbz_A 23 GITFSIPEGALVAVVGQVGCGKSSLL-SALL 52 (237)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHH-HHHT
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHH-HHHh
Confidence 34567889999999999999999998 5555
No 87
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.85 E-value=0.083 Score=50.71 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=25.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl-~~l~ 51 (224)
T 2pcj_A 22 GISLSVKKGEFVSIIGASGSGKSTLL-YILG 51 (224)
T ss_dssp EEEEEEETTCEEEEEECTTSCHHHHH-HHHT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 34567889999999999999999997 5554
No 88
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.75 E-value=0.093 Score=49.03 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=22.7
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
..+|+.++|+|++|+|||||+ ..|...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~-~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLS-NPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHH-HHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH-HHHHHH
Confidence 468999999999999999998 556543
No 89
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.73 E-value=0.089 Score=48.16 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=21.8
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.+|..++|.|++|+||||++ ..+..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~-~~L~~ 28 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVR-KRIFE 28 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHH-HHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH-HHHHH
Confidence 3568999999999999999998 66654
No 90
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.62 E-value=0.11 Score=50.71 Aligned_cols=31 Identities=16% Similarity=0.384 Sum_probs=26.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|+.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl-k~l~G 51 (250)
T 2d2e_A 21 GVNLVVPKGEVHALMGPNGAGKSTLG-KILAG 51 (250)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHH-HHHHT
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 34578899999999999999999997 66664
No 91
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.62 E-value=0.093 Score=51.26 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=25.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 27 ~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 56 (247)
T 2ff7_A 27 NINLSIKQGEVIGIVGRSGSGKSTLT-KLIQ 56 (247)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHH-HHHT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 34567889999999999999999997 5554
No 92
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.51 E-value=0.27 Score=49.11 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=20.6
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
..+++.|++|||||+|| ..+++...
T Consensus 52 ~~vLl~GppGtGKT~la-~aia~~~~ 76 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA-KAVATEAN 76 (322)
T ss_dssp CEEEEECSSSSCHHHHH-HHHHHHHT
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHC
Confidence 34799999999999999 67777653
No 93
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.43 E-value=0.098 Score=51.79 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.9
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 30 vsl~i~~Ge~~~liG~nGsGKSTLl-~~l~ 58 (266)
T 4g1u_C 30 VSLHIASGEMVAIIGPNGAGKSTLL-RLLT 58 (266)
T ss_dssp EEEEEETTCEEEEECCTTSCHHHHH-HHHT
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHH-HHHh
Confidence 3478889999999999999999998 5554
No 94
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.42 E-value=0.64 Score=44.81 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=21.6
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
.+..++|.|++|||||+++ ..+++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la-~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA-KAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH-HHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHhC
Confidence 3455899999999999999 67776643
No 95
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.39 E-value=0.1 Score=50.26 Aligned_cols=31 Identities=35% Similarity=0.417 Sum_probs=25.8
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|+.
T Consensus 26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G 56 (229)
T 2pze_A 26 DINFKIERGQLLAVAGSTGAGKTSLL-MMIMG 56 (229)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHH-HHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 34567889999999999999999997 55553
No 96
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.38 E-value=0.1 Score=51.45 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 24 ~vsl~i~~Ge~~~liG~nGsGKSTLl-k~l~ 53 (262)
T 1b0u_A 24 GVSLQARAGDVISIIGSSGSGKSTFL-RCIN 53 (262)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHH-HHHT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 34567889999999999999999997 5554
No 97
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.33 E-value=0.12 Score=51.02 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=25.7
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ ..|+.
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLl-k~l~G 68 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLS-ATLAG 68 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHH-HHHHT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999997 66654
No 98
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.24 E-value=0.41 Score=48.92 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=23.3
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
-+++..+.|.|++|||||+++ ..++++-
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v-~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLV-NDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHH-HHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 467888999999999999998 6666554
No 99
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.23 E-value=0.11 Score=50.50 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=25.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 49 (243)
T 1mv5_A 20 DISFEAQPNSIIAFAGPSGGGKSTIF-SLLE 49 (243)
T ss_dssp EEEEEECTTEEEEEECCTTSSHHHHH-HHHT
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 34467889999999999999999998 5554
No 100
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.23 E-value=0.11 Score=51.95 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=25.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 26 ~isl~i~~Ge~~~iiGpnGsGKSTLl-~~l~ 55 (275)
T 3gfo_A 26 GINMNIKRGEVTAILGGNGVGKSTLF-QNFN 55 (275)
T ss_dssp EEEEEEETTSEEEEECCTTSSHHHHH-HHHT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH-HHHH
Confidence 34578899999999999999999998 5554
No 101
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.22 E-value=0.11 Score=51.52 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=25.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+
T Consensus 42 ~vsl~i~~Gei~~liG~NGsGKSTLl-k~l~ 71 (263)
T 2olj_A 42 GINVHIREGEVVVVIGPSGSGKSTFL-RCLN 71 (263)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHH-HHHT
T ss_pred eeEEEEcCCCEEEEEcCCCCcHHHHH-HHHH
Confidence 34567889999999999999999998 5554
No 102
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.16 E-value=0.2 Score=49.76 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=20.9
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.+.-++|.|++|||||+|+ ..|+++.
T Consensus 36 ~~~~lll~G~~GtGKT~la-~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLL-QAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 4567889999999999998 5666554
No 103
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.16 E-value=0.1 Score=47.70 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=24.3
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.+.+|+.++|+|+.|+|||||+ ..|+..
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLl-r~l~g~ 56 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLT-RGMLQG 56 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHH-HHHHHh
Confidence 46689999999999999999998 666543
No 104
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.15 E-value=0.11 Score=51.17 Aligned_cols=29 Identities=28% Similarity=0.245 Sum_probs=25.0
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+.+|+..+|+|++|+|||||+ .+|+
T Consensus 34 vsl~i~~Gei~~l~G~NGsGKSTLl-k~l~ 62 (256)
T 1vpl_A 34 ISFEIEEGEIFGLIGPNGAGKTTTL-RIIS 62 (256)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHH-HHHT
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHH-HHHh
Confidence 3467889999999999999999998 5554
No 105
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.13 E-value=0.11 Score=51.48 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=25.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 37 ~vsl~i~~Ge~~~i~G~nGsGKSTLl-k~l~ 66 (271)
T 2ixe_A 37 GLTFTLYPGKVTALVGPNGSGKSTVA-ALLQ 66 (271)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHH-HHHT
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHH-HHHh
Confidence 34567889999999999999999998 5554
No 106
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.09 E-value=0.11 Score=49.92 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=24.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 28 vsl~i~~Ge~~~iiG~NGsGKSTLl-k~l~ 56 (214)
T 1sgw_A 28 ITMTIEKGNVVNFHGPNGIGKTTLL-KTIS 56 (214)
T ss_dssp EEEEEETTCCEEEECCTTSSHHHHH-HHHT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 3467889999999999999999997 5554
No 107
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.05 E-value=0.12 Score=50.25 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=24.8
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~ 53 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTL-SAIA 53 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHH-HHHT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 3467889999999999999999997 5554
No 108
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.05 E-value=0.11 Score=51.75 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=25.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLl-k~l~ 68 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLL-NILN 68 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHH-HHHT
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHH-HHHh
Confidence 34567889999999999999999997 5554
No 109
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.05 E-value=0.11 Score=50.99 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=24.8
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~ 67 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIA-KLLY 67 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHH-HHHT
T ss_pred eEEEECCCCEEEEECCCCCCHHHHH-HHHh
Confidence 3467889999999999999999998 5554
No 110
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.03 E-value=0.11 Score=49.85 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=22.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
-+.+.+|..++|.|++|+|||||+ ..|..
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~-k~L~~ 47 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVC-EKIME 47 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHH-HHHHH
T ss_pred eccCCCCEEEEEECCCCCCHHHHH-HHHHH
Confidence 357889999999999999999998 66654
No 111
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.00 E-value=0.1 Score=51.10 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=24.9
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl-k~l~ 54 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLI-NVIT 54 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHH-HHHT
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHH-HHHh
Confidence 3467889999999999999999998 5554
No 112
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.90 E-value=0.18 Score=52.03 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=33.3
Q ss_pred cccccccceeeeeee-eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 187 YNLLSAGIKAVDSLV-PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 187 ~epl~TGIraID~l~-pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
...+.||+..+|-++ .+-+|.-.+|.|++|+|||+|++. ++++
T Consensus 103 ~~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlq-lA~~ 146 (331)
T 2vhj_A 103 TGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHA-LGEA 146 (331)
T ss_dssp STTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHH-HHHH
T ss_pred hhccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHH-HHHh
Confidence 445679999999987 233677789999999999999953 4433
No 113
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.90 E-value=0.12 Score=50.69 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=25.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+|+..+|+|++|+|||||+ ..|+
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLl-k~l~ 47 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLL-ARMA 47 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHH-HHHT
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHH-HHHh
Confidence 34567889999999999999999998 5554
No 114
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.76 E-value=0.13 Score=50.80 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=24.9
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.+-+|+..+|+|++|+|||||+ ..|+
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl-~~i~ 54 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLL-QIVA 54 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHH-HHHT
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHH-HHHh
Confidence 3478899999999999999999997 5554
No 115
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.73 E-value=0.12 Score=50.58 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=25.3
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ ..|+.
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G 53 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLL-DLLLG 53 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHH-HHHTT
T ss_pred EEEEECCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3467889999999999999999997 55553
No 116
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.48 E-value=0.1 Score=49.38 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=19.0
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+.+-+|+.++|+|++|+|||||+ .++.
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~-~~L~ 48 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVA-NKLL 48 (231)
T ss_dssp CCEECCCEEEEECSCC----CHH-HHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHH-HHHH
Confidence 34668999999999999999998 6665
No 117
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.37 E-value=0.15 Score=46.56 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=21.2
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+|+.++|+|++|+|||||+ ..+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~-~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK-NTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 5788999999999999998 666654
No 118
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.23 E-value=0.15 Score=47.10 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=21.3
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-+.+-+|..+.|+|++|+||||++ ..++..
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~-~~La~~ 48 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLG-KAFARK 48 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHH-HHHHHH
T ss_pred eEecCCCCEEEEEcCCCCCHHHHH-HHHHHH
Confidence 345668999999999999999998 555543
No 119
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.22 E-value=0.17 Score=52.70 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=26.9
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaG 52 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLL-RCLAG 52 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHH-HHHHT
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHH-HHHhc
Confidence 45678999999999999999999998 66664
No 120
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.21 E-value=0.15 Score=47.23 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=21.5
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.-+|..++|.|++|+|||||+ ..|...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~-~~l~~~ 29 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLA-QALART 29 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHH-HHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHH-HHHHHH
Confidence 457889999999999999998 666543
No 121
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.21 E-value=0.68 Score=46.54 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.2
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.-+++.|++|||||+|| ..+++..
T Consensus 46 ~~iLL~GppGtGKT~la-~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA-KAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHH-HHHHHHT
T ss_pred ceEEEECCCCccHHHHH-HHHHHHc
Confidence 45789999999999999 6777664
No 122
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.18 E-value=2.5 Score=40.78 Aligned_cols=27 Identities=33% Similarity=0.282 Sum_probs=21.5
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+|+-+.|.|+.|+||||+++..+.+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 467888999999999999997665544
No 123
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.16 E-value=0.089 Score=48.14 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=25.6
Q ss_pred eeeeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 196 AVDSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 196 aID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+++. +++.+|.+++|+|++|+|||||+ ..++
T Consensus 17 ~l~~-~~~~~~~~v~lvG~~g~GKSTLl-~~l~ 47 (210)
T 1pui_A 17 DIRH-LPSDTGIEVAFAGRSNAGKSSAL-NTLT 47 (210)
T ss_dssp SGGG-SSCSCSEEEEEEECTTSSHHHHH-TTTC
T ss_pred CHhH-CCCCCCcEEEEECCCCCCHHHHH-HHHh
Confidence 4444 88999999999999999999997 4443
No 124
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.05 E-value=0.7 Score=49.69 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.1
Q ss_pred eeeeccCCCCchHhHHHHHHHhhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
++|.|++|||||+|+ ..|+++..
T Consensus 52 vLL~GppGtGKT~La-raia~~~~ 74 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLA-RAVAGEAN 74 (476)
T ss_dssp EEEECCTTSSHHHHH-HHHHHHHT
T ss_pred EEEECCCCCCHHHHH-HHHHHHcC
Confidence 899999999999998 77887654
No 125
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.04 E-value=1.3 Score=42.57 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=20.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|.+|+|||||+ .+|.++.
T Consensus 23 ~I~lvG~~g~GKSSli-n~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATG-NSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHH-HHHHTSC
T ss_pred EEEEECCCCCcHHHHH-HHHhCCC
Confidence 7889999999999997 8888655
No 126
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.03 E-value=0.17 Score=45.53 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.8
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+|+.++|+|++|+|||+|+ ..|++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~-~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL-QAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 8999999999999999998 6677654
No 127
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.01 E-value=0.15 Score=47.61 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=20.1
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+|+.++|+|++|+|||||+ ..+...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl-~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL-KKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 6889999999999999998 666654
No 128
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.00 E-value=0.57 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=19.2
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.-++|.|++|||||+++ ..|.+..
T Consensus 51 ~~vLL~GppGtGKTtlA-r~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA-EVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHT
T ss_pred cEEEEECCCCCcHHHHH-HHHHHHh
Confidence 45799999999999998 5666543
No 129
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.94 E-value=0.45 Score=50.16 Aligned_cols=25 Identities=32% Similarity=0.232 Sum_probs=20.5
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+.-++|.|++|+|||+|+ ..|.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa-~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL-QSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 456889999999999998 6676654
No 130
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.87 E-value=0.1 Score=53.00 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=25.5
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.-+.|-+|++++|+|++|+|||||+ ..|+.
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl-~lL~g 148 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLC-NSLIH 148 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHH-HHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHHH-HHHhh
Confidence 3567889999999999999999998 55553
No 131
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=89.84 E-value=0.59 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=17.5
Q ss_pred cceeeeeccCCCCchHhHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.+-++|.|++|+|||+||. .++
T Consensus 147 ~~~v~I~G~~GiGKTtLa~-~~~ 168 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAA-EAV 168 (591)
T ss_dssp CEEEEEECCTTSSHHHHHH-HHH
T ss_pred CceEEEEcCCCCCHHHHHH-HHH
Confidence 4567899999999999983 344
No 132
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.84 E-value=0.19 Score=52.15 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=26.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaG 63 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTIL-RLIAG 63 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHH-HHHHT
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHH-HHHhC
Confidence 45677889999999999999999998 66663
No 133
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.71 E-value=0.15 Score=48.66 Aligned_cols=27 Identities=30% Similarity=0.222 Sum_probs=23.4
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+-+|+..+|+|++|+|||||+ ..|+..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl-~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLA-MAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHH-HHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH-HHHhcC
Confidence 478999999999999999998 666654
No 134
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.69 E-value=0.2 Score=52.06 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=26.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaG 51 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTL-LMLAG 51 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHH-HHHHT
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHH-HHHHC
Confidence 45678889999999999999999998 66663
No 135
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.69 E-value=0.2 Score=53.15 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=37.0
Q ss_pred cccccccceeeeeeee-ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 187 YNLLSAGIKAVDSLVP-IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 187 ~epl~TGIraID~l~p-IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
..-+.||+..+|-++. +-+|+-+.|.|.+|+|||++++....|..
T Consensus 177 ~~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 177 ITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp CCSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence 4567899999998874 66899999999999999999976555443
No 136
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.57 E-value=0.2 Score=52.21 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=26.5
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaG 59 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTL-RMIAG 59 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHH-HHHHT
T ss_pred eeEEEECCCCEEEEECCCCChHHHHH-HHHHc
Confidence 44578889999999999999999998 66663
No 137
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.57 E-value=0.2 Score=52.01 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=26.5
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaG 51 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLL-YTIAG 51 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHH-HHHHT
T ss_pred eeEEEECCCCEEEEECCCCchHHHHH-HHHhc
Confidence 44578889999999999999999998 66663
No 138
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.46 E-value=0.21 Score=52.39 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=26.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaG 51 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLL-RMIAG 51 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHH-HHHHT
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHH-HHHHc
Confidence 44578899999999999999999998 66653
No 139
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.40 E-value=0.21 Score=51.99 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=26.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaG 51 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTL-RMIAG 51 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHH-HHHHT
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHH-HHHHc
Confidence 45578889999999999999999997 66663
No 140
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.35 E-value=0.17 Score=46.84 Aligned_cols=28 Identities=25% Similarity=0.152 Sum_probs=23.2
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
-.+.+|+.++|.|++|+||||++ ..+..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~-~~L~~ 43 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLA-KNLQK 43 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHH-HHHHT
T ss_pred ccCCCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 35677889999999999999998 55654
No 141
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.32 E-value=0.19 Score=50.50 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=25.3
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ ..|+.
T Consensus 57 isl~i~~Ge~~~i~G~NGsGKSTLl-k~l~G 86 (290)
T 2bbs_A 57 INFKIERGQLLAVAGSTGAGKTSLL-MMIMG 86 (290)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHH-HHHTT
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHH-HHHhc
Confidence 3467889999999999999999997 65553
No 142
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.29 E-value=0.17 Score=49.98 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=21.8
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.+.+| ++++|++|||||+|+ ..|++..
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLa-kala~~~ 68 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLA-KAVANES 68 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHH-HHHHHHT
T ss_pred CCCCe--EEEECCCCCcHHHHH-HHHHHHc
Confidence 34466 999999999999998 7777654
No 143
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.27 E-value=0.17 Score=48.29 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=20.8
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+.+| ++|+|++|+|||+|+ ..|++..
T Consensus 48 ~~~g--~ll~G~~G~GKTtl~-~~i~~~~ 73 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHLA-RAVAGEA 73 (254)
T ss_dssp CCSE--EEEECCTTSSHHHHH-HHHHHHT
T ss_pred CCCe--EEEECCCCCCHHHHH-HHHHHHh
Confidence 4455 899999999999998 6676543
No 144
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.20 E-value=0.22 Score=45.58 Aligned_cols=28 Identities=36% Similarity=0.488 Sum_probs=22.7
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+..+|.+++|+|++|+||||++ ..+...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~-~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMA-EMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH-HHHHHh
Confidence 4557889999999999999998 555543
No 145
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.01 E-value=0.24 Score=51.73 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=26.9
Q ss_pred eee-eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 195 KAV-DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 195 raI-D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.++ |.=+.|-+|+..+|+|++|+|||||+ .+|.
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLl-r~i~ 75 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLI-RCVN 75 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHH
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHH-HHHh
Confidence 344 44578999999999999999999997 5554
No 146
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.90 E-value=0.47 Score=47.07 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=17.8
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.++|.|++|||||++| ..|++.
T Consensus 57 ~vll~G~~GtGKT~la-~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLA-NIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHH-HHHHHH
T ss_pred eEEEECcCCCCHHHHH-HHHHHH
Confidence 5789999999999998 455443
No 147
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.82 E-value=0.24 Score=51.94 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=25.7
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.|-+|+..+|+|++|+|||||+ .+|+.
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaG 69 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLL-SAFLR 69 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHH-HHHHT
T ss_pred eeEEEcCCCEEEEECCCCChHHHHH-HHHhC
Confidence 3468899999999999999999998 66663
No 148
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.80 E-value=0.21 Score=46.88 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.1
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|+|++|+|||||+ .+|+...
T Consensus 1 G~~i~i~G~nG~GKTTll-~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI-HKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHH-HHHHHHH
T ss_pred CCEEEEECCCCChHHHHH-HHHHhhc
Confidence 789999999999999997 6666543
No 149
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.77 E-value=0.23 Score=45.82 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=23.1
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
-++++.++|.|++|+|||+++ ..++++..
T Consensus 49 ~~~~~~~ll~G~~G~GKT~la-~~l~~~~~ 77 (242)
T 3bos_A 49 GDGVQAIYLWGPVKSGRTHLI-HAACARAN 77 (242)
T ss_dssp TCSCSEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 346788999999999999998 56665543
No 150
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.76 E-value=0.18 Score=52.18 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=26.4
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+.+|+..+|+|++|+|||||+ .+|+.
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaG 48 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFL-ELIAG 48 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHH-HHHHT
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHH-HHHHc
Confidence 44578899999999999999999998 66663
No 151
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.75 E-value=0.22 Score=49.22 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=23.1
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
=+.+- |+..+|+|++|+|||||+ ..|+
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLl-k~l~ 51 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLL-RAIS 51 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHH-HHHT
T ss_pred eEEEC-CEEEEEECCCCCCHHHHH-HHHh
Confidence 45677 999999999999999998 5554
No 152
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.66 E-value=0.62 Score=47.52 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
-++|.|++|||||+|| ..+++...
T Consensus 86 ~iLL~GppGtGKT~la-~ala~~~~ 109 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLA-KAVATEAN 109 (355)
T ss_dssp CEEEECSTTSCHHHHH-HHHHHHHT
T ss_pred eEEEECCCCCcHHHHH-HHHHHHhC
Confidence 4789999999999999 67776653
No 153
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.54 E-value=0.16 Score=51.56 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=25.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.|-+|++++|+|++|+|||||+ ..|.
T Consensus 72 ~isl~i~~Ge~vaivG~sGsGKSTLl-~ll~ 101 (306)
T 3nh6_A 72 DVSFTVMPGQTLALVGPSGAGKSTIL-RLLF 101 (306)
T ss_dssp EEEEEECTTCEEEEESSSCHHHHHHH-HHHT
T ss_pred eeeEEEcCCCEEEEECCCCchHHHHH-HHHH
Confidence 33468899999999999999999998 5554
No 154
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.45 E-value=0.26 Score=43.29 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=21.2
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+.+..++|.|++|+|||+++ ..++++.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHH-HHHHHHH
Confidence 44567899999999999998 5566544
No 155
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.16 E-value=0.27 Score=43.98 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.1
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+|..++|+|++|+||||++ ..+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~-~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA-SEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH-HHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH-HHHHH
Confidence 5788999999999999998 55543
No 156
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.12 E-value=0.26 Score=43.87 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=19.6
Q ss_pred cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|..++|.|++|+||||++ ..+...
T Consensus 4 ~~~i~l~G~~GsGKSTl~-~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG-RQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHH
Confidence 567899999999999998 555543
No 157
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.95 E-value=0.25 Score=50.03 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=23.8
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+.+|+.++|.|++|+|||||+ ..|...
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~-~~L~gl 113 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTA-RVLQAL 113 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHH-HHHHhh
Confidence 3788999999999999999998 666543
No 158
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.92 E-value=0.24 Score=48.23 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=20.8
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+.+| ++|+|++|+|||||+ ..|++..
T Consensus 72 ~~~g--vll~Gp~GtGKTtl~-~~i~~~~ 97 (278)
T 1iy2_A 72 IPKG--VLLVGPPGVGKTHLA-RAVAGEA 97 (278)
T ss_dssp CCCE--EEEECCTTSSHHHHH-HHHHHHT
T ss_pred CCCe--EEEECCCcChHHHHH-HHHHHHc
Confidence 4455 899999999999998 6676543
No 159
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=87.84 E-value=0.28 Score=45.44 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=19.2
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+++|+|++|+|||||+ ..|+...
T Consensus 2 ~i~l~G~nGsGKTTLl-~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV-KKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 6899999999999998 6666543
No 160
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.73 E-value=0.18 Score=52.11 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=26.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaG 53 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFM-RIIAG 53 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHH-HHHHT
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHH-HHHhC
Confidence 44567889999999999999999998 66663
No 161
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.73 E-value=0.27 Score=47.08 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=21.4
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-+|+.++|+|++|+|||||+ ..+...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLl-k~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLI-QALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHhcc
Confidence 46889999999999999997 666644
No 162
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.64 E-value=0.17 Score=54.41 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=31.1
Q ss_pred ccccccceeeeeee--eccccceeeeeccCCCCchHhHH
Q psy13776 188 NLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAI 224 (539)
Q Consensus 188 epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~ 224 (539)
+.+.||+.++|.+. .+-+|+..+|+|++|+|||||+.
T Consensus 19 ~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~ 57 (525)
T 1tf7_A 19 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSI 57 (525)
T ss_dssp CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHH
T ss_pred ccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHH
Confidence 34568888887654 67899999999999999999983
No 163
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.59 E-value=3.6 Score=36.27 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=19.2
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|+.++|++|+|||||+ ..+.+..
T Consensus 25 ~i~v~G~~~~GKSsli-~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLL-NALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHH-HHHHTSC
T ss_pred EEEEECCCCCCHHHHH-HHHHcCc
Confidence 7889999999999997 6676543
No 164
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.48 E-value=1.4 Score=39.59 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=19.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++|+|++|+|||+|+ ..+.+..
T Consensus 25 ki~v~G~~~~GKSsli-~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFL-FRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHT
T ss_pred EEEEECCCCcCHHHHH-HHHhcCC
Confidence 6789999999999997 6777654
No 165
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.48 E-value=0.14 Score=52.78 Aligned_cols=21 Identities=48% Similarity=1.007 Sum_probs=18.8
Q ss_pred eecccccccchhhccccCCCcc
Q psy13776 477 VDVPVGEDLLGRVVDALGIRPA 498 (539)
Q Consensus 477 ~~~~~~~~~l~~v~~~lg~~Pa 498 (539)
++||||+++||||+|+|| .|-
T Consensus 3 ~~~~vg~~~lGrv~~~~g-~p~ 23 (347)
T 2obl_A 3 HKIRVGDALLGRLIDGIG-RPM 23 (347)
T ss_dssp CEEEECGGGTTCEECTTS-CBC
T ss_pred ceeecCccccCCEECCCC-CcC
Confidence 689999999999999999 453
No 166
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=87.43 E-value=0.29 Score=44.79 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=19.5
Q ss_pred cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+-++|+|++|+|||||+ .++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~-~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL-KKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHH-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHH-HHHHhh
Confidence 355789999999999998 667654
No 167
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=87.34 E-value=1.7 Score=46.84 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=17.6
Q ss_pred ceeeeeccCCCCchHhHHHHHHH
Q psy13776 207 QRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.-+.|.|..|+|||||| ..+.|
T Consensus 153 ~vv~I~G~gGvGKTtLA-~~v~~ 174 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIA-SQALS 174 (549)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHH
T ss_pred eEEEEEcCCCCCHHHHH-HHHHH
Confidence 45689999999999999 35554
No 168
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.06 E-value=0.32 Score=48.69 Aligned_cols=28 Identities=18% Similarity=0.031 Sum_probs=23.2
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+..+|..++|.|++|+|||||+ ..|...
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~-~~L~~~ 103 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTA-RVLQAL 103 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHH-HHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHH-HHHHHH
Confidence 4588999999999999999998 666543
No 169
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.00 E-value=1.1 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=18.3
Q ss_pred ccceeeeeccCCCCchHhHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
++..+++.|++|+||||++ ..++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~-~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTA-GKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHH-HHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHH
Confidence 4667789999999999998 3444
No 170
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.98 E-value=0.36 Score=43.46 Aligned_cols=28 Identities=29% Similarity=0.694 Sum_probs=22.6
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.-+.+..| ..+|+|++|+|||||+ +.|.
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll-~ai~ 47 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIG-DAIL 47 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHH-HHHH
T ss_pred EEEecCCC-cEEEECCCCCCHHHHH-HHHH
Confidence 34566677 7899999999999998 6665
No 171
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=86.93 E-value=0.44 Score=54.86 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=15.1
Q ss_pred eeeeeccCCCCchHhHH
Q psy13776 208 RELIIGDRQTGKTALAI 224 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~ 224 (539)
.+.|.|..|+||||||.
T Consensus 149 ~v~i~G~gG~GKTtLa~ 165 (1249)
T 3sfz_A 149 WVTIYGMAGCGKSVLAA 165 (1249)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 46899999999999993
No 172
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.91 E-value=0.39 Score=46.67 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=24.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+ +..+|+|++|+|||||+ ..|+
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl-~~l~ 45 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFL-ELIA 45 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHH-HHHH
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHH-HHHh
Confidence 34567889 99999999999999998 5555
No 173
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.76 E-value=0.36 Score=44.59 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=20.7
Q ss_pred cccceeeeeccCCCCchHhHHHHHHH
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
-+|+.+.|.|++|+||||++ ..+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~-~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA-CALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 46888999999999999998 55543
No 174
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=86.50 E-value=0.36 Score=45.13 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=21.5
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-+|.-++|.|++|+|||||+ ..++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~-~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVR-EAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHH-HHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHH-HHHHhh
Confidence 36888999999999999998 666643
No 175
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.41 E-value=0.27 Score=52.60 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=25.2
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+.+-+|++++|+|++|+|||||+ .+|++-.
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLl-r~L~Gl~ 162 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLS-RTLCSYA 162 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHH-HHHHHTT
T ss_pred eEeCCCCEEEEECCCCCCHHHHH-HHHhCcc
Confidence 44569999999999999999998 7777643
No 176
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.09 E-value=0.36 Score=43.80 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=18.7
Q ss_pred cceeeeeccCCCCchHhHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|+.++|+|++|+||||++ ..+.
T Consensus 2 g~ii~l~G~~GaGKSTl~-~~L~ 23 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTC-KRLA 23 (189)
T ss_dssp EEEEEEECSTTSSHHHHH-HHHH
T ss_pred CeEEEEECCCCCcHHHHH-HHHh
Confidence 567899999999999998 5565
No 177
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.07 E-value=0.93 Score=51.92 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=21.6
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhhhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQKSI 233 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~~~ 233 (539)
..++++|++|||||.+| ..++++...
T Consensus 512 ~gvLl~GPPGtGKT~lA-kaiA~e~~~ 537 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLA-KAIANECQA 537 (806)
T ss_dssp SCCEEESSTTSSHHHHH-HHHHHTTTC
T ss_pred ceEEEecCCCCCchHHH-HHHHHHhCC
Confidence 35899999999999998 788877643
No 178
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.07 E-value=0.33 Score=43.49 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=20.5
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+|.|++|+|++|+|||||+ ..+.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl-~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLL-NALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHH-HHHHTS
T ss_pred CCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 5789999999999999997 666643
No 179
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.06 E-value=0.39 Score=44.46 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=22.3
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.+|.-+.|.|++|+|||||+ ..+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~-~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI-KKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH-HHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH-HHHHHh
Confidence 457888999999999999998 666644
No 180
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.05 E-value=0.32 Score=42.84 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=20.8
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+....++|.|++|+|||+++ ..++++.
T Consensus 41 ~~~~~vll~G~~G~GKT~la-~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIV-EGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHH-HHHHHHH
Confidence 34567889999999999998 5565543
No 181
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=86.02 E-value=1.7 Score=39.21 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.0
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|++|+|||+|+ ..+.+..
T Consensus 10 ki~v~G~~~~GKSsli-~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFL-FRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHH-HHHHTCC
T ss_pred EEEEECCCCCCHHHHH-HHHhcCC
Confidence 6899999999999997 6666543
No 182
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=86.00 E-value=0.42 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=19.6
Q ss_pred cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.+++|.|++|+||||++ ..+...
T Consensus 5 ~~~i~i~G~~GsGKSTl~-~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC-KAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHH
Confidence 568999999999999998 555543
No 183
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=85.97 E-value=5 Score=40.60 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.3
Q ss_pred eccccceeeeeccCCCCchHhHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.+.+|+.++|.|++|+||||++ ..++
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~-~~LA 126 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSL-AKMA 126 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHH-HHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHH-HHHH
Confidence 4677889999999999999998 3444
No 184
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=85.87 E-value=0.38 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.8
Q ss_pred ccceeeeeccCCCCchHhHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
++..++|+|++|+||||++ ..|+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~-k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVC-QRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHH
Confidence 4688999999999999998 5555
No 185
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=85.87 E-value=0.4 Score=43.12 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.1
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+|..+.+.|++|+||||++ ..+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~-~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA-SRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 5778999999999999998 55543
No 186
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.87 E-value=0.32 Score=49.67 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=23.2
Q ss_pred eccc--cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 202 PIGR--GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 202 pIGr--GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
++-+ |++.+|+|++|+|||||+ ..|+..
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLl-k~L~gl 193 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLV-NKLAAV 193 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHH-HHHHHH
T ss_pred HHHHhhhCeEEEECCCCCCHHHHH-HHHHHH
Confidence 3456 999999999999999998 666654
No 187
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=85.82 E-value=1.1 Score=39.85 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=19.3
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++|+|++|+|||+|+ ..+.+..
T Consensus 18 ki~v~G~~~~GKSsli-~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLL-LRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHSC
T ss_pred EEEEECcCCCCHHHHH-HHHHcCC
Confidence 6889999999999997 6777543
No 188
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.71 E-value=0.41 Score=47.05 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.6
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+-+|+.++|.|++|+||||++ ..|+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll-~~l~g~ 48 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI-ASMIDY 48 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH-HHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH-HHHHHh
Confidence 789999999999999999998 666654
No 189
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.67 E-value=0.23 Score=53.40 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=33.6
Q ss_pred cccccccceeeeeee--eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 187 YNLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 187 ~epl~TGIraID~l~--pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.+.||+.-+|-++ .+-+|+..+|.|++|+|||||+ .+++.
T Consensus 260 ~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl-~~l~g 303 (525)
T 1tf7_A 260 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV-SRFVE 303 (525)
T ss_dssp CCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHH-HHHHH
T ss_pred cceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHH-HHHHH
Confidence 455678887777653 6889999999999999999998 45553
No 190
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.24 E-value=0.48 Score=43.95 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=22.2
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+..+|..++|.|++|+||||++ ..+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~-~~l~~ 44 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLA-NQLSQ 44 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHH-HHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 3567889999999999999998 55554
No 191
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=84.97 E-value=0.48 Score=51.49 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=25.8
Q ss_pred eeeeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 196 AVDSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 196 aID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+++.+..+.+|++.+|+|++|+|||||+ ..|.
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLl-k~l~ 68 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAV-KILA 68 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHH-HHHH
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHH-HHHh
Confidence 3444436899999999999999999998 5554
No 192
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=84.90 E-value=0.54 Score=44.29 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.5
Q ss_pred eeeeccCCCCchHhHH
Q psy13776 209 ELIIGDRQTGKTALAI 224 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~ 224 (539)
++|+|++|+|||++|.
T Consensus 2 ilV~Gg~~SGKS~~A~ 17 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE 17 (180)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEECCCCCcHHHHHH
Confidence 5799999999999993
No 193
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.80 E-value=0.45 Score=41.86 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=19.3
Q ss_pred cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.-++|.|++|||||++| ..|.+.
T Consensus 24 ~~~vll~G~~GtGKt~lA-~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGA-RYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHH-HHHHHS
T ss_pred CCCEEEECCCCCCHHHHH-HHHHHh
Confidence 456889999999999998 556544
No 194
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=84.70 E-value=0.15 Score=51.84 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=26.9
Q ss_pred eeeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 197 VDSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 197 ID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+|.|+++-+|+..+|+|++|+|||||+ ..|.
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLl-n~L~ 194 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLL-NAIS 194 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHH-HHHC
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHH-HHhc
Confidence 567788889999999999999999997 5554
No 195
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=84.42 E-value=0.38 Score=49.06 Aligned_cols=30 Identities=30% Similarity=0.308 Sum_probs=25.4
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-+.+.+|+.++|+|++|+|||||+ ..++..
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl-~~l~g~ 78 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTI-DALGSL 78 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CcccCCCeEEEEECCCCCCHHHHH-HHHHHh
Confidence 356889999999999999999997 666643
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.23 E-value=0.53 Score=46.59 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=21.5
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.+.-++|.|++|||||+|+ ..+++..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la-~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA-KAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH-HHHHHHT
T ss_pred CCceEEEECCCCcCHHHHH-HHHHHHh
Confidence 4566899999999999998 6777654
No 197
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=84.07 E-value=0.28 Score=49.13 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=27.6
Q ss_pred eeeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 197 VDSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 197 ID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
||-|+.+-+|+..+++|++|+|||||+ .+|.
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLl-n~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSIL-SRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHH-HHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHH-HHHH
Confidence 677888889999999999999999997 6665
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.07 E-value=0.58 Score=42.82 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=19.9
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+-++|.|++|||||+|+ ..|++..
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 67899999999999998 5666554
No 199
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.07 E-value=0.57 Score=42.12 Aligned_cols=24 Identities=33% Similarity=0.260 Sum_probs=19.2
Q ss_pred cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
...++|.|++|+|||+++ ..++++
T Consensus 38 ~~~~ll~G~~G~GKT~l~-~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATA-IALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHH
Confidence 345899999999999998 556654
No 200
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=83.89 E-value=0.56 Score=47.22 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=23.6
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+.+|+.++|+|++|+||||++ ..|+..
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll-~~Lag~ 123 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSL-GKLAHR 123 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHH-HHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHH-HHHHHH
Confidence 4678999999999999999998 566644
No 201
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=83.77 E-value=2.6 Score=36.87 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=18.6
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 14 ki~v~G~~~~GKSsli-~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLV-LRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHC
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 6899999999999997 666654
No 202
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=83.53 E-value=0.55 Score=45.39 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.7
Q ss_pred cccceeeeeccCCCCchHhHHHHHH
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
-+|..++|.|++|+||||++ ..++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~-k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLC-KALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHH-HHHH
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHH
Confidence 47889999999999999998 5555
No 203
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=83.45 E-value=0.6 Score=51.67 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=26.4
Q ss_pred eeeeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 196 AVDSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 196 aID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.++.+..+.+|+..+|+|++|+|||||+ ..|.
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLL-kiL~ 124 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTAL-KILA 124 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHH-HHHH
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHH-HHHh
Confidence 3455557889999999999999999997 5555
No 204
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=83.39 E-value=0.59 Score=51.10 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=25.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|.
T Consensus 362 ~isl~i~~G~~~~ivG~sGsGKSTLl-~~l~ 391 (595)
T 2yl4_A 362 DFSLSIPSGSVTALVGPSGSGKSTVL-SLLL 391 (595)
T ss_dssp EEEEEECTTCEEEEECCTTSSSTHHH-HHHT
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 34567889999999999999999998 5554
No 205
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=83.37 E-value=0.68 Score=42.40 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=21.0
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-+|..+.|.|++|+||||++ ..+...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~-~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQS-KLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHH-HHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHH-HHHHHH
Confidence 35778999999999999998 555543
No 206
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=83.34 E-value=0.57 Score=51.10 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=25.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|+..+|+|++|+|||||+ ..|.
T Consensus 361 ~v~~~i~~G~~~~ivG~sGsGKSTLl-~~l~ 390 (582)
T 3b60_A 361 NINLKIPAGKTVALVGRSGSGKSTIA-SLIT 390 (582)
T ss_dssp EEEEEECTTCEEEEEECTTSSHHHHH-HHHT
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 34567889999999999999999998 5554
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.33 E-value=0.6 Score=45.38 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=21.2
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+..++|.|++|||||+++ ..+++...
T Consensus 54 ~~~vll~Gp~GtGKT~la-~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA-RAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHH-HHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHH-HHHHHHhC
Confidence 567899999999999998 67776543
No 208
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=83.27 E-value=0.58 Score=50.84 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.6
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+-+|++.+|+|++|+|||||+ ..|+.
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLl-k~l~G 334 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFV-KMLAG 334 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHH-HHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 4679999999999999999998 66664
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.19 E-value=0.57 Score=44.75 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=18.9
Q ss_pred eeeeccCCCCchHhHHHHHHHhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
++|.|++|||||+++ ..|++..
T Consensus 48 vll~G~~GtGKT~la-~~la~~~ 69 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLA-KAIAGEA 69 (257)
T ss_dssp EEEECCTTSCHHHHH-HHHHHHH
T ss_pred EEEECcCCCCHHHHH-HHHHHHc
Confidence 899999999999998 6676654
No 210
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=83.06 E-value=0.6 Score=50.91 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=25.3
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+|+..+|+|++|+|||||+ ..|..
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll-~~l~g 391 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIA-NLFTR 391 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 3467889999999999999999998 66653
No 211
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=83.03 E-value=0.64 Score=41.80 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.2
Q ss_pred cccceeeeeccCCCCchHhHHHHHHH
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.++..+.|.|.+|+||||++ ..+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~-~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG-KELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH-HHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH-HHHHH
Confidence 35778999999999999998 45543
No 212
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=82.99 E-value=0.69 Score=41.39 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=19.2
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+|..+.|.|++|+||||++ ..+..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~-~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS-QLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 3567899999999999998 55554
No 213
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=82.95 E-value=0.58 Score=42.60 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=18.6
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++|+|++|+|||||+ ..+++.
T Consensus 31 kv~lvG~~g~GKSTLl-~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLL-SRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 6789999999999997 666654
No 214
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=82.85 E-value=0.63 Score=46.91 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.5
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
++|+.++|+|++|+||||++ ..|+..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll-~~Lagl 125 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTI-AKLGRY 125 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHH-HHHHHH
Confidence 57889999999999999998 555543
No 215
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=82.78 E-value=0.68 Score=40.68 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=17.6
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+.|.|++|+||||++ ..+...
T Consensus 3 ~i~l~G~~GsGKsT~~-~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA-AKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHH
Confidence 4679999999999998 555543
No 216
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.65 E-value=0.59 Score=46.32 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=18.7
Q ss_pred eeeeccCCCCchHhHHHHHHHhhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+++.|++|||||+|+ ..|+++..
T Consensus 39 lLl~GppGtGKT~la-~aiA~~l~ 61 (293)
T 3t15_A 39 LGIWGGKGQGKSFQC-ELVFRKMG 61 (293)
T ss_dssp EEEEECTTSCHHHHH-HHHHHHHT
T ss_pred EEEECCCCCCHHHHH-HHHHHHhC
Confidence 567799999999998 67776653
No 217
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.53 E-value=0.61 Score=46.94 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.4
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+.++|+|++|+|||||+ ..|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa-~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA-HIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHh
Confidence 56899999999999998 6777654
No 218
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=82.50 E-value=1.5 Score=43.22 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=16.1
Q ss_pred eeeeecc-CCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGD-RQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~-~gtGKTtLa~~~I~nq~ 231 (539)
...++++ +|||||+++ ..++++.
T Consensus 49 ~~~L~~G~~G~GKT~la-~~la~~l 72 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVA-KALCHDV 72 (324)
T ss_dssp SEEEECSSTTSSHHHHH-HHHHHHT
T ss_pred eEEEeeCcCCCCHHHHH-HHHHHHh
Confidence 4555555 999999998 5565443
No 219
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=82.49 E-value=2.3 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=17.3
Q ss_pred ceeeeeccCCCCchHhHHHHHHH
Q psy13776 207 QRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.-++|.|..|.||||||. .+.+
T Consensus 151 RVV~IvGmGGIGKTTLAk-~Vy~ 172 (1221)
T 1vt4_I 151 KNVLIDGVLGSGKTWVAL-DVCL 172 (1221)
T ss_dssp CEEEECCSTTSSHHHHHH-HHHH
T ss_pred eEEEEEcCCCccHHHHHH-HHHH
Confidence 356899999999999993 4443
No 220
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=82.37 E-value=0.68 Score=42.14 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=18.8
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++|+|++|+|||||+ ..+++.
T Consensus 7 kv~lvG~~g~GKSTLl-~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLL-SRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 6789999999999997 667654
No 221
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=82.31 E-value=0.76 Score=41.32 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=20.0
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+|..+.|.|.+|+||||++ ..+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~-~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS-MALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHH
Confidence 5788999999999999998 55543
No 222
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.25 E-value=7.1 Score=38.62 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
-.+|.|++|+|||+++ ..+++..
T Consensus 40 ~~ll~G~~G~GKT~la-~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA-RLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 3689999999999998 5666544
No 223
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=82.01 E-value=0.69 Score=39.89 Aligned_cols=22 Identities=14% Similarity=0.447 Sum_probs=18.6
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||||+ ..+.+.
T Consensus 7 ~i~v~G~~~~GKssl~-~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMI-QRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHC
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 6789999999999997 666654
No 224
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=82.00 E-value=0.67 Score=50.81 Aligned_cols=30 Identities=27% Similarity=0.508 Sum_probs=25.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|++.+|+|++|+|||||+ ..|.
T Consensus 373 ~isl~i~~G~~~~ivG~sGsGKSTll-~~l~ 402 (598)
T 3qf4_B 373 DITFHIKPGQKVALVGPTGSGKTTIV-NLLM 402 (598)
T ss_dssp SEEEECCTTCEEEEECCTTSSTTHHH-HHHT
T ss_pred ceEEEEcCCCEEEEECCCCCcHHHHH-HHHh
Confidence 34567889999999999999999997 5554
No 225
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=81.98 E-value=0.7 Score=39.68 Aligned_cols=22 Identities=23% Similarity=0.603 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 3 ki~v~G~~~~GKSsli-~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF-NRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHC
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 6889999999999997 666654
No 226
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=81.89 E-value=0.67 Score=50.52 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.2
Q ss_pred eeeeeccccceeeeeccCCCCchHhH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALA 223 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa 223 (539)
|.=+.+-+|++.+|+|++|+|||||+
T Consensus 359 ~isl~i~~G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 359 DINLSIEKGETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHH
T ss_pred eeEEEECCCCEEEEECCCCChHHHHH
Confidence 34567889999999999999999997
No 227
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=81.81 E-value=0.76 Score=39.65 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=18.8
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|++|+|||+|+ ..+.+..
T Consensus 2 ki~~~G~~~~GKssl~-~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTIL-YKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHC
T ss_pred EEEEECCCCCCHHHHH-HHHHcCC
Confidence 6789999999999997 6666543
No 228
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=81.80 E-value=0.81 Score=41.62 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=19.8
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+|..+.|.|.+|+||||++ ..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~-~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA-TLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH-HHHHH
Confidence 4678899999999999998 55554
No 229
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=81.80 E-value=0.62 Score=51.64 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=23.0
Q ss_pred eeeeeccccceeeeeccCCCCchHhH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALA 223 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa 223 (539)
|.=+.+-+|+..+|+|++|+|||||+
T Consensus 36 ~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 36 NIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp SEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ccEEEECCCCEEEEECCCCCCHHHHh
Confidence 33467889999999999999999996
No 230
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=81.72 E-value=0.7 Score=39.62 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++++|++|+|||+|+ ..+.++
T Consensus 5 ~i~v~G~~~~GKSsli-~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALT-VQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 7899999999999997 566644
No 231
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=81.68 E-value=0.73 Score=42.20 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.7
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
+++|.|++|+||||++ ..+..
T Consensus 3 ~i~i~G~~GsGKSTl~-~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA-QMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCcCHHHHH-HHHHH
Confidence 6889999999999998 55554
No 232
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=81.59 E-value=0.67 Score=51.22 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=25.8
Q ss_pred eeeeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 196 AVDSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 196 aID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+++.+..+-+|+..+|+|++|+|||||+ ..|.
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLl-kiL~ 138 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAV-KILA 138 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHH-HHHT
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHH-HHHh
Confidence 4455446789999999999999999998 5444
No 233
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=81.54 E-value=0.77 Score=44.72 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=19.9
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+..++|.|++|||||+++ ..+++..
T Consensus 67 ~~~vll~G~~GtGKT~la-~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA-LKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHH
Confidence 446899999999999998 5566544
No 234
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=81.50 E-value=0.87 Score=40.56 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=18.3
Q ss_pred cceeeeeccCCCCchHhHHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.-+.|.|.+|+||||++ ..+..
T Consensus 3 ~~~i~l~G~~GsGKST~a-~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV-RCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHH
Confidence 456789999999999998 55543
No 235
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=81.45 E-value=0.79 Score=42.44 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=17.4
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
+++|.|++|+||||++ ..+..
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG-ERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5789999999999998 55543
No 236
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.34 E-value=0.73 Score=39.72 Aligned_cols=23 Identities=13% Similarity=0.481 Sum_probs=18.9
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|++|+|||+|+ ..+.+..
T Consensus 5 ~i~v~G~~~~GKssli-~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIV-LRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHSC
T ss_pred EEEEECCCCCCHHHHH-HHHhcCC
Confidence 6889999999999997 6666543
No 237
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=81.25 E-value=0.39 Score=47.96 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=27.0
Q ss_pred eeeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 197 VDSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 197 ID~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
||-++.+-+|+..+|+|++|+|||||+ .+|.
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll-~~l~ 190 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLL-NAIN 190 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHH-HHHS
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHH-HHhc
Confidence 677788889999999999999999997 5554
No 238
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=81.24 E-value=0.85 Score=53.34 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=26.1
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+.+|++.+|+|++|+|||||+ .+|.+
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLL-k~Lag 483 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLM-RAIAN 483 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHH-HHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 4567889999999999999999998 67764
No 239
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=81.23 E-value=0.81 Score=42.26 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=17.4
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
+++|.|++|+||||++ ..+..
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA-EQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5789999999999998 55543
No 240
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=81.19 E-value=0.66 Score=50.50 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.5
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+.+-+|+..+|+|++|+|||||+ .+|+
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl-~~l~ 315 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFA-RILV 315 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHH-HHHT
T ss_pred ceECCCCEEEEECCCCCCHHHHH-HHHh
Confidence 35789999999999999999998 5555
No 241
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=81.16 E-value=0.74 Score=39.66 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=18.7
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|. ..+.+.
T Consensus 5 ki~v~G~~~~GKssli-~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALT-VQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHC
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 6889999999999997 666654
No 242
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=81.16 E-value=0.78 Score=41.55 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.0
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
-++|.|++|+|||+++ ..+++..
T Consensus 47 ~~ll~G~~G~GKT~l~-~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA-RLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 4789999999999998 6666554
No 243
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=81.13 E-value=0.89 Score=40.85 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=18.6
Q ss_pred cceeeeeccCCCCchHhHHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+..+.|+|++|+||||++ ..+..
T Consensus 5 ~~~i~l~G~~GsGKst~a-~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG-SQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHH
T ss_pred CCEEEEECCCCCCHHHHH-HHHHH
Confidence 457889999999999998 55553
No 244
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.11 E-value=0.51 Score=48.47 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=24.5
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
-+.+-+|+.++|.|++|+|||||+ ..|+.
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll-~~l~~ 197 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLM-KALMQ 197 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHH-HHHHT
T ss_pred HHHHhcCCEEEEECCCCCCHHHHH-HHHHh
Confidence 346779999999999999999998 66654
No 245
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=81.03 E-value=0.79 Score=39.12 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||||+ ..+.++
T Consensus 5 ~i~v~G~~~~GKssl~-~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT-IQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 6899999999999997 666644
No 246
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=80.97 E-value=0.79 Score=50.69 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=23.6
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+-+|+..+|+|++|+|||||+ .+|..
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLl-k~l~G 404 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFV-KMLAG 404 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHH-HHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHH-HHHhc
Confidence 4689999999999999999998 66664
No 247
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=80.91 E-value=0.75 Score=39.76 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 5 ~i~v~G~~~~GKssli-~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLL-VRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHC
T ss_pred EEEEECcCCCCHHHHH-HHHHhC
Confidence 6789999999999997 666644
No 248
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=80.91 E-value=0.83 Score=47.36 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=24.0
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+.+|+.++|+|++|+||||++ ..|+..
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll-~~Lag~ 180 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSL-GKLAHR 180 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHH-HHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHH-HHHHhh
Confidence 5778999999999999999998 566654
No 249
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=80.91 E-value=3.9 Score=43.65 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=18.4
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
++..+++.|.+|+||||++ ..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~-~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTV-AKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCeEEEEECcCCCCHHHHH-HHHHH
Confidence 4556789999999999998 34443
No 250
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=80.90 E-value=0.78 Score=39.36 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 6 ~i~v~G~~~~GKssl~-~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALT-LQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 6899999999999997 666644
No 251
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=80.88 E-value=0.89 Score=40.35 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=18.8
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|-++|.|.+|+||||++ ..+...
T Consensus 8 ~~i~l~G~~GsGKSTva-~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA-QELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHH-HHHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHHH
Confidence 67899999999999998 555543
No 252
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=80.63 E-value=0.7 Score=49.14 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=24.6
Q ss_pred eeeccccce--eeeeccCCCCchHhHHHHHHHh
Q psy13776 200 LVPIGRGQR--ELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 200 l~pIGrGQR--~lI~g~~gtGKTtLa~~~I~nq 230 (539)
=+.+-+|+. ++|+|++|+|||||+ .+|++.
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLl-n~L~G~ 65 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLM-DTLFNT 65 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHH-HHHHTS
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHH-HHHhCc
Confidence 356789999 999999999999997 777654
No 253
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=80.63 E-value=0.63 Score=44.56 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=19.5
Q ss_pred eeeeccCCCCchHhHHHHHHHhhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
++|.|++|||||+++ ..+++...
T Consensus 47 vll~G~~GtGKT~la-~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLA-KAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHH-HHHHHHHT
T ss_pred EEEECCCCCcHHHHH-HHHHHHhC
Confidence 789999999999998 67776553
No 254
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=80.63 E-value=3.2 Score=37.78 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++|+|++|+|||+|+ ..+.+.
T Consensus 31 ki~vvG~~~vGKSsli-~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVV-QRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHhhC
Confidence 6789999999999997 666654
No 255
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=80.56 E-value=0.78 Score=47.83 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=23.8
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.+.+|+.++|.|++|+|||||+ ..+++
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~-~~l~~ 191 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLA-AALLE 191 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHH-HHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 56778999999999999999998 55553
No 256
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=80.51 E-value=0.83 Score=39.58 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=18.6
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 8 ~i~v~G~~~~GKssli-~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLV-LRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHC
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 6889999999999997 666654
No 257
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=80.51 E-value=0.69 Score=40.29 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=18.3
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 6 ki~i~G~~~vGKSsl~-~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLA-SLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHH-HHHHCC
T ss_pred EEEEECCCCccHHHHH-HHHhcC
Confidence 6889999999999997 566543
No 258
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=80.50 E-value=0.8 Score=40.43 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=19.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++|+|++|+|||+|+ ..+.+..
T Consensus 13 ki~v~G~~~~GKSsli-~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVL-YQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHSC
T ss_pred EEEEECCCCCCHHHHH-HHHhcCC
Confidence 6889999999999997 6666543
No 259
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=80.48 E-value=0.95 Score=41.40 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=20.9
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-+|-.+.|.|.+|+||||++ ..+...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~-~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQS-RKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHH-HHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH-HHHHHH
Confidence 45778899999999999998 555543
No 260
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=80.46 E-value=0.82 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=19.8
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+++|+|++|+|||||+ .+|++..
T Consensus 4 ~v~lvG~nGaGKSTLl-n~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV-NTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhCCC
Confidence 4689999999999997 8888765
No 261
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=80.43 E-value=1.7 Score=49.67 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=19.7
Q ss_pred eeeeccCCCCchHhHHHHHHHhhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+++.|++|||||+|+ ..+++...
T Consensus 241 ILL~GPPGTGKT~LA-raiA~elg 263 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIA-RAVANETG 263 (806)
T ss_dssp EEEECCTTSCHHHHH-HHHHTTTT
T ss_pred EEEECCCCCCHHHHH-HHHHHHhC
Confidence 789999999999999 77876654
No 262
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.38 E-value=0.87 Score=45.51 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=20.6
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|.-++|.|++|||||+++ ..+++..
T Consensus 70 ~~~vLl~GppGtGKT~la-~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA-MGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHh
Confidence 467899999999999998 5666554
No 263
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=80.38 E-value=0.84 Score=40.74 Aligned_cols=23 Identities=35% Similarity=0.264 Sum_probs=14.7
Q ss_pred ccceeeeeccCCCCchHhHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
++..+.|.|.+|+||||++ ..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a-~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA-HTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHH-HHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHH
Confidence 5677899999999999998 5554
No 264
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=80.38 E-value=0.97 Score=41.86 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.0
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+|+-..|.|++|+||||+++..+.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 47778899999999999997655543
No 265
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=80.38 E-value=0.82 Score=39.50 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=19.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|++|+|||+|+ ..+++..
T Consensus 8 ~i~v~G~~~~GKSsli-~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIM-WRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHSC
T ss_pred EEEEECcCCCCHHHHH-HHHHcCC
Confidence 6789999999999997 6666543
No 266
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=80.27 E-value=0.84 Score=44.02 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=19.9
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
...++|.|++|||||++| ..++++.
T Consensus 64 ~~~vLl~G~~GtGKT~la-~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALA-AKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEEECCCCCcHHHHH-HHHHHHh
Confidence 346789999999999998 5666553
No 267
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=80.21 E-value=0.95 Score=41.15 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=19.9
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+|..+.|.|++|+||||++ ..+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~-~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC-MNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH-HHHHH
Confidence 5778899999999999998 55543
No 268
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.19 E-value=0.89 Score=43.89 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=20.3
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+..++|.|++|||||+++ ..+++..
T Consensus 50 ~~~vll~G~~GtGKT~la-~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA-RRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHh
Confidence 456899999999999998 5666554
No 269
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=80.18 E-value=0.96 Score=39.59 Aligned_cols=22 Identities=27% Similarity=0.598 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 8 ki~v~G~~~~GKssl~-~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLT-TCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHGG
T ss_pred EEEEECcCCCCHHHHH-HHHHhC
Confidence 6789999999999997 666644
No 270
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=80.09 E-value=0.46 Score=49.33 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=24.8
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.+...-+|+..+|+|++|+|||||+ ..|+.
T Consensus 207 ~~L~~~~~G~~~~lvG~sG~GKSTLl-n~L~g 237 (358)
T 2rcn_A 207 KPLEEALTGRISIFAGQSGVGKSSLL-NALLG 237 (358)
T ss_dssp HHHHHHHTTSEEEEECCTTSSHHHHH-HHHHC
T ss_pred HHHHHhcCCCEEEEECCCCccHHHHH-HHHhc
Confidence 44445568999999999999999997 66653
No 271
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=80.04 E-value=0.85 Score=39.90 Aligned_cols=22 Identities=23% Similarity=0.604 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++++|++|+|||+|+ ..+.+.
T Consensus 9 ~i~v~G~~~~GKSsli-~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLM-NRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 6789999999999997 666644
No 272
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=79.97 E-value=0.83 Score=40.57 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
++.++|++|+|||||+ ..+.+.
T Consensus 9 ~i~lvG~~gvGKStL~-~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIF-NALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 7899999999999997 666643
No 273
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=79.92 E-value=0.87 Score=39.22 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 8 ~i~v~G~~~~GKssli-~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLV-LRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 6789999999999997 666654
No 274
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=79.85 E-value=1 Score=40.24 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=18.6
Q ss_pred cceeeeeccCCCCchHhHHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+..+.|.|.+|+||||++ ..+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a-~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC-ARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHH
Confidence 456899999999999998 45543
No 275
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=79.82 E-value=0.81 Score=40.33 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=17.8
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
+++|+|++|+|||||+ ..+.+
T Consensus 5 ~v~lvG~~gvGKStL~-~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIF-NALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHH-HHHHC
T ss_pred EEEEECCCCCCHHHHH-HHHhC
Confidence 6899999999999997 55654
No 276
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=79.75 E-value=1.1 Score=40.59 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=22.3
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
...-+|..+.+.|.+|+||||++ ..+...
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~-~~L~~~ 36 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIA-TRLADL 36 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHH-HHHHHH
Confidence 33446788899999999999998 555544
No 277
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=79.71 E-value=0.91 Score=39.65 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=18.7
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 11 ~i~v~G~~~~GKssli-~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALT-IQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 7889999999999997 666654
No 278
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=79.69 E-value=0.8 Score=50.72 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=22.2
Q ss_pred eeeccccceeeeeccCCCCchHhH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALA 223 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa 223 (539)
=+.|-+|+..+|+|++|+|||||+
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl 365 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLV 365 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHH
T ss_pred eeEecCCCEEEEEeeCCCCHHHHH
Confidence 467889999999999999999997
No 279
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=79.64 E-value=0.76 Score=45.05 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=23.0
Q ss_pred eeccc---cceeeeeccCCCCchHhHHHHHHH
Q psy13776 201 VPIGR---GQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 201 ~pIGr---GQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.+-+ |+.+.|+|.+|+||||++ ..+..
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~-~~La~ 70 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVG-KIMAR 70 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHH-HHHHH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHH-HHHHH
Confidence 45556 999999999999999998 55554
No 280
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=79.64 E-value=0.9 Score=49.37 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=24.6
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.+.+|+.++|+|++|+|||||+ ..|+..
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl-~~LAgl 316 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTI-GKLARQ 316 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHH-HHHHHH
Confidence 56889999999999999999998 556543
No 281
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=79.60 E-value=0.99 Score=45.23 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=21.9
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
.++-+.|.|++|||||+|+ ..|+++..
T Consensus 151 ~~~~lll~G~~GtGKT~La-~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLL-AAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 3678899999999999998 56766543
No 282
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=79.53 E-value=0.89 Score=49.77 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=24.8
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|++.+|+|++|+|||||+ ..|.
T Consensus 361 ~isl~i~~Ge~~~ivG~sGsGKSTll-~~l~ 390 (587)
T 3qf4_A 361 GVNFSVKPGSLVAVLGETGSGKSTLM-NLIP 390 (587)
T ss_dssp EEEEEECTTCEEEEECSSSSSHHHHH-HTTT
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 33468889999999999999999997 4443
No 283
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=79.49 E-value=1.1 Score=40.40 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=20.2
Q ss_pred cccceeeeeccCCCCchHhHHHHHHH
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.++..+.|.|++|+||||++ ..+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~-~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC-EKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH-HHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH-HHHHH
Confidence 35678899999999999998 55543
No 284
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=79.41 E-value=1.1 Score=40.23 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=19.3
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
++..+.|.|.+|+||||++ ..+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~-~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLS-QALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 4667889999999999998 55543
No 285
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=79.37 E-value=0.92 Score=40.01 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=19.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|++|+|||+|+ ..+.+..
T Consensus 6 ki~v~G~~~~GKSsli-~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALT-IQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHSS
T ss_pred EEEEECCCCCCHHHHH-HHHHhCC
Confidence 6789999999999997 6676543
No 286
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=79.36 E-value=0.92 Score=39.53 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=18.9
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|++|+|||+|+ ..+.+..
T Consensus 17 ~i~v~G~~~~GKSsli-~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLL-HQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHSC
T ss_pred EEEEECCCCCCHHHHH-HHHHcCC
Confidence 6789999999999997 6666543
No 287
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=79.27 E-value=0.99 Score=45.11 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=20.5
Q ss_pred cccceeeeeccCCCCchHhHHHHHHH
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+++..++|.|++|+|||||+ ..|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla-~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS-IQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 56778999999999999998 44543
No 288
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=79.25 E-value=0.92 Score=39.54 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+++.
T Consensus 16 ~i~v~G~~~~GKssli-~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLI-TRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 7889999999999997 666644
No 289
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=79.25 E-value=0.95 Score=39.23 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=19.0
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
=|++++|++|+|||+|+ ..+.+.
T Consensus 8 ~~i~v~G~~~~GKssl~-~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTIL-YRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHHS
T ss_pred cEEEEECCCCCCHHHHH-HHHhcC
Confidence 47899999999999997 666543
No 290
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=79.19 E-value=0.98 Score=39.47 Aligned_cols=22 Identities=36% Similarity=0.675 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++++|++|+|||+|+ ..+.+.
T Consensus 10 ~i~v~G~~~~GKSsli-~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLM-HRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 6889999999999997 666654
No 291
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=79.05 E-value=1.2 Score=41.75 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=19.6
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+|.++.|.|.+|+||||++ ..+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a-~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQC-EFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHH-HHHHH
T ss_pred CceEEEEECCCCCCHHHHH-HHHHH
Confidence 5678899999999999998 55543
No 292
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=78.98 E-value=6.4 Score=39.60 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=20.4
Q ss_pred ccccceeeeeccCCCCchHhHHHHHH
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
..+|+.++|.|++|+||||++ ..++
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~-~~LA 125 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSC-GKLA 125 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHH-HHHH
T ss_pred CCCCeEEEEEcCCCChHHHHH-HHHH
Confidence 456788899999999999998 4444
No 293
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=78.82 E-value=0.98 Score=38.96 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 5 ~i~v~G~~~~GKssli-~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLV-LRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHH-HHHHTC
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 7899999999999997 666643
No 294
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=78.79 E-value=1.1 Score=40.35 Aligned_cols=22 Identities=14% Similarity=0.454 Sum_probs=18.0
Q ss_pred ceeeeeccCCCCchHhHHHHHHH
Q psy13776 207 QRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.++.|.|.+|+||||++ ..+..
T Consensus 3 ~~I~l~G~~GsGKsT~a-~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG-RRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHH
Confidence 46889999999999998 55554
No 295
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=78.79 E-value=1 Score=40.30 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.7
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++++|++|+|||||+ ..+.+.
T Consensus 50 ~i~vvG~~g~GKSsll-~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLL-TLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 7899999999999997 666654
No 296
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=78.72 E-value=0.86 Score=39.54 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=17.2
Q ss_pred eeeeeccCCCCchHhHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~ 228 (539)
|+.++|++|+|||+|+ ..+.
T Consensus 4 ki~ivG~~~~GKSsli-~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLA-GTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHH-HHHH
Confidence 6889999999999997 5554
No 297
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=78.70 E-value=1.1 Score=40.44 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=19.6
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
++..+.|.|++|+||||++ ..+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a-~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC-EKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH-HHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHH
Confidence 4567899999999999998 55554
No 298
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=78.64 E-value=0.77 Score=39.92 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.0
Q ss_pred eeeeeccCCCCchHhHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTI 227 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I 227 (539)
.+.|.|++|+||||++ ..+
T Consensus 3 ~I~l~G~~GsGKsT~a-~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA-KLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHH-HHH
T ss_pred EEEEECCCCCCHHHHH-HHH
Confidence 3679999999999998 555
No 299
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=78.46 E-value=0.99 Score=40.74 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=18.2
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+.|+|++|+|||+|+ ..+++.
T Consensus 22 ki~ivG~~~vGKSsL~-~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALV-HRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 6789999999999997 556654
No 300
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=78.39 E-value=0.98 Score=41.48 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=16.5
Q ss_pred eeeeeccCCCCchHhHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~ 228 (539)
.++|.|++|+||||++ ..+.
T Consensus 4 ~i~l~G~~GsGKST~~-~~La 23 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA-NLFT 23 (206)
T ss_dssp EEEEECSTTSCHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHH-HHHH
Confidence 4789999999999998 5454
No 301
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=78.32 E-value=1.2 Score=40.27 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.4
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.|.|.+|+||||++ ..+..
T Consensus 2 ~I~i~G~~GsGKsT~~-~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS-AEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHH-HHHHH
T ss_pred EEEEECCCccCHHHHH-HHHHH
Confidence 5789999999999998 55554
No 302
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=78.17 E-value=1.2 Score=41.81 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=19.1
Q ss_pred cccceeeeeccCCCCchHhHHHHHHH
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
-++.++.|.|++|+||||++ ..+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a-~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVS-SRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHH-HHHHH
T ss_pred ccCcEEEEECCCCCCHHHHH-HHHHH
Confidence 35678899999999999998 55543
No 303
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=78.07 E-value=1 Score=39.74 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=19.0
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|++|+|||+|+ ..+.+..
T Consensus 12 ki~v~G~~~~GKSsli-~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLL-HQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHSS
T ss_pred EEEEECCCCCCHHHHH-HHHHcCC
Confidence 6889999999999997 6666543
No 304
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=78.05 E-value=1.1 Score=39.57 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=18.3
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 20 ki~v~G~~~~GKSsl~-~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALT-IQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 6789999999999997 666644
No 305
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=78.04 E-value=1.1 Score=40.04 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||||+ ..+++.
T Consensus 23 ki~vvG~~~~GKSsli-~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALT-IQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 6889999999999997 666654
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=77.99 E-value=1.1 Score=40.00 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.0
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
++.|.|++|+||||++ ..++..
T Consensus 6 ~i~i~G~~GsGKsTla-~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA-RALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHH-HHHHHH
T ss_pred EEEEEcCCCCCHHHHH-HHHHHH
Confidence 5789999999999998 555543
No 307
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=77.97 E-value=1.1 Score=40.27 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++|+|++|+|||+|+ ..+.+.
T Consensus 27 ki~v~G~~~~GKSsLi-~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLL-SRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 6789999999999997 666654
No 308
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=77.95 E-value=1.1 Score=39.59 Aligned_cols=22 Identities=14% Similarity=0.521 Sum_probs=18.9
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+++.
T Consensus 9 ki~v~G~~~~GKSsli-~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIV-LRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 6899999999999997 667654
No 309
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=77.94 E-value=1.3 Score=41.32 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=19.5
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+|-++.|.|.+|+||||++ ..+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a-~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA-PNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHH
Confidence 4667899999999999998 55543
No 310
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=77.85 E-value=1.1 Score=46.21 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=23.7
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+-+|+.++|.|++|+||||++ ..|++..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll-~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI-ASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH-HHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH-HHHHhhc
Confidence 678999999999999999998 6666543
No 311
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=77.79 E-value=1.1 Score=40.44 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=18.8
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|++|+|||+|+ ..+++..
T Consensus 23 ki~vvG~~~vGKTsLi-~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALT-VKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHSS
T ss_pred EEEEECCCCCcHHHHH-HHHHhCC
Confidence 6789999999999997 6666543
No 312
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=77.77 E-value=1.1 Score=39.28 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.0
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+++++|++|+|||+|+ ..+.+..
T Consensus 12 ~i~v~G~~~~GKssli-~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLL-VRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHSC
T ss_pred EEEEECcCCCCHHHHH-HHHHhCC
Confidence 6889999999999997 6666543
No 313
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=77.72 E-value=0.9 Score=40.78 Aligned_cols=21 Identities=29% Similarity=0.661 Sum_probs=17.6
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
|+.|+|++|+|||||+ ..+++
T Consensus 4 kv~ivG~~gvGKStLl-~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLL-QQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHH-HHHTC
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 6789999999999997 55554
No 314
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=77.68 E-value=1.1 Score=39.31 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 20 ki~v~G~~~~GKSsli-~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALT-LQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhhC
Confidence 6889999999999997 666654
No 315
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=77.61 E-value=1.1 Score=39.31 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|. ..+.+.
T Consensus 10 ki~v~G~~~~GKssl~-~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLL-ISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 7899999999999997 666644
No 316
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=77.60 E-value=0.95 Score=40.06 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=18.2
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|. ..+++.
T Consensus 3 ki~v~G~~~~GKSsli-~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLI-YRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHH-HHHHSC
T ss_pred EEEEECCCCCCHHHHH-HHHhCc
Confidence 6789999999999997 566643
No 317
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=77.54 E-value=1.2 Score=40.88 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=18.1
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-.+.|.|++|+||||++ ..+...
T Consensus 19 ~~I~l~G~~GsGKSTla-~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG-EAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHH
Confidence 35789999999999998 555543
No 318
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=77.49 E-value=1.3 Score=39.60 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=17.7
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+.|.|.+|+||||++ ..+...
T Consensus 3 ~I~i~G~~GsGKsT~~-~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL-AKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHH
Confidence 4679999999999998 555543
No 319
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.42 E-value=1 Score=44.72 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=21.8
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.-+++...+|.|++|+||||++ ..++++
T Consensus 32 ~~~~~~~~ll~Gp~G~GKTtl~-~~la~~ 59 (354)
T 1sxj_E 32 QPRDLPHLLLYGPNGTGKKTRC-MALLES 59 (354)
T ss_dssp CTTCCCCEEEECSTTSSHHHHH-HTHHHH
T ss_pred hCCCCCeEEEECCCCCCHHHHH-HHHHHH
Confidence 3456666999999999999998 566653
No 320
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=77.33 E-value=0.84 Score=40.05 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=15.9
Q ss_pred cceeeeeccCCCCchHhH
Q psy13776 206 GQRELIIGDRQTGKTALA 223 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa 223 (539)
+..++|.|++|||||++|
T Consensus 27 ~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp SSCEEEEEETTCCHHHHH
T ss_pred CCcEEEECCCCccHHHHH
Confidence 456889999999999998
No 321
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=77.28 E-value=0.62 Score=47.34 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=23.4
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.+-+|+.++|.|++|+|||||+ ..|+.
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll-~~l~g 193 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYI-KSIME 193 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHH-HHGGG
T ss_pred hhccCCCEEEEECCCCCCHHHHH-HHHhC
Confidence 45678999999999999999997 55553
No 322
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=77.27 E-value=0.85 Score=40.12 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+.++|++|+|||+|+ ..++++
T Consensus 9 ki~~vG~~~vGKTsli-~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLI-HRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 7889999999999997 566654
No 323
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=77.27 E-value=1 Score=40.22 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=19.1
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-+++++|++|+|||||+ ..++++
T Consensus 24 ~~i~v~G~~~~GKSsli-~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFI-NSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHH-HHHHTC
T ss_pred CEEEEECCCCCCHHHHH-HHHhCC
Confidence 36889999999999997 667654
No 324
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=77.22 E-value=3.7 Score=38.88 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=17.5
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
|+.++|++|+|||+|+ ..+++
T Consensus 15 KivlvGd~~VGKTsLi-~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLI-TRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCcCHHHHH-HHHHh
Confidence 7889999999999998 44554
No 325
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=77.14 E-value=1.2 Score=39.96 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=19.0
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|++|+|||+|+ ..+.++.
T Consensus 24 ki~vvG~~~~GKSsli-~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFL-FRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHSC
T ss_pred EEEEECCCCCCHHHHH-HHHHcCC
Confidence 6789999999999997 6666543
No 326
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=77.14 E-value=1.1 Score=39.24 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=19.5
Q ss_pred cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.-+++++|++|+|||+|+ ..+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~-~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLL-DAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHH-HHHHTT
T ss_pred CCEEEEECCCCCCHHHHH-HHHhCC
Confidence 457899999999999997 666643
No 327
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=77.13 E-value=1.1 Score=43.21 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=21.8
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+..++..+.|.|.+|+||||++ ..+..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla-~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIH-RIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHH-HHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 4556778999999999999998 55554
No 328
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=77.11 E-value=1.4 Score=40.33 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=18.8
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
++..+.|.|++|+||||++ ..+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a-~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQA-VKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 3456889999999999998 55543
No 329
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=77.10 E-value=1.2 Score=39.18 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 7 ~i~~~G~~~~GKssl~-~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLL-ISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 7899999999999997 566543
No 330
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=77.06 E-value=1.2 Score=48.26 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.4
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+|.-++++|++|||||+|+ ..|++..
T Consensus 107 ~g~~vll~Gp~GtGKTtla-r~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA-KSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHhc
Confidence 6889999999999999998 6676554
No 331
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=77.05 E-value=1.1 Score=43.70 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=19.9
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.-++|.|++|||||++| ..+.++.
T Consensus 39 ~~vll~G~~GtGKT~la-~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA-HVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHh
Confidence 56889999999999998 6676654
No 332
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=77.01 E-value=1.4 Score=41.77 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.0
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+|.+++|.|++|+||||++ ..+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~-~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA-KIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH-HHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHH
Confidence 5778999999999999998 55554
No 333
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=76.93 E-value=1.2 Score=39.25 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=17.1
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.|.|.+|+||||++ ..+..
T Consensus 4 ~I~i~G~~GsGKST~a-~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA-REFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEecCCCCCHHHHH-HHHHh
Confidence 4679999999999998 55554
No 334
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=76.70 E-value=1.2 Score=39.65 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+.++|++|+|||+|+ ..+.+.
T Consensus 9 ki~v~G~~~vGKSsli-~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALL-HVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 6789999999999997 666643
No 335
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=76.61 E-value=1.2 Score=39.78 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 22 ki~v~G~~~~GKSsli-~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLT-YRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 6789999999999997 666654
No 336
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=76.59 E-value=1.2 Score=40.06 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=18.9
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|++|+|||+|+ ..+++..
T Consensus 25 ki~vvG~~~~GKSsli-~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIV-CRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHCC
T ss_pred EEEEECcCCCCHHHHH-HHHhcCC
Confidence 6789999999999997 6666543
No 337
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=76.49 E-value=1 Score=38.91 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=16.9
Q ss_pred eeeeeccCCCCchHhHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~ 228 (539)
|+.++|++|+|||+|+ ..+.
T Consensus 4 ki~~vG~~~~GKSsli-~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALA-RIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHH-HHHC
T ss_pred EEEEECCCCCCHHHHH-HHHc
Confidence 6889999999999997 5554
No 338
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=76.48 E-value=1 Score=42.69 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=21.3
Q ss_pred eccccceeeeeccCCCCchHhHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+.-+|.-++|.|+.|+||||++ ..+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~-~~L~ 41 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYL-NHFE 41 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHH-HTTG
T ss_pred CCCCceEEEEECCCCCCHHHHH-HHHH
Confidence 4467889999999999999997 4443
No 339
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=76.48 E-value=0.8 Score=40.02 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=18.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+++.
T Consensus 11 ~i~v~G~~~~GKssl~-~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLL-LRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHH-HHHCSC
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 6789999999999997 566543
No 340
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=76.32 E-value=1.4 Score=39.05 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=18.3
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+.++|++|+|||+|+ ..+.+.
T Consensus 16 ki~vvG~~~~GKssL~-~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNL-KWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHT
T ss_pred EEEEECCCCCCHHHHH-HHHHhh
Confidence 6789999999999997 666544
No 341
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=76.30 E-value=1.3 Score=39.12 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 8 ki~~~G~~~~GKSsli-~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLT-IQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 7899999999999997 666643
No 342
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=76.25 E-value=1.4 Score=45.50 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=22.8
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.-+|+.++|.|++|+||||++ ..|++..
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL-~~l~g~~ 147 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTL-AAMLDYL 147 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHH-HHHHhcc
Confidence 456779999999999999998 6666544
No 343
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=76.24 E-value=1.3 Score=43.11 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=19.4
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
..+++.|++|||||++| ..|++..
T Consensus 48 ~~~ll~G~~GtGKt~la-~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA-KTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHH-HHHHHHH
T ss_pred eEEEEECCCCcCHHHHH-HHHHHHH
Confidence 35789999999999998 6666554
No 344
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=76.07 E-value=1.2 Score=48.14 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=20.8
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
-+| ++|+|++|||||+|+ ..|++..
T Consensus 64 p~G--vLL~GppGtGKTtLa-raIa~~~ 88 (499)
T 2dhr_A 64 PKG--VLLVGPPGVGKTHLA-RAVAGEA 88 (499)
T ss_dssp CSE--EEEECSSSSSHHHHH-HHHHHHT
T ss_pred Cce--EEEECCCCCCHHHHH-HHHHHHh
Confidence 345 899999999999998 6777654
No 345
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=76.00 E-value=1.4 Score=44.98 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.3
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-.+|+.++|+|++|+||||++ ..|+..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll-~~Lag~ 152 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTI-AKLANW 152 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH-HHHHHH
Confidence 367899999999999999997 556543
No 346
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=75.98 E-value=1.6 Score=40.57 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=21.1
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.+|..+.|.|.+|+||||++ ..+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~-~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLA-VELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH-HHHHH
Confidence 456788999999999999998 55554
No 347
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=75.97 E-value=1.3 Score=39.77 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.3
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 24 ki~v~G~~~~GKSsli-~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFV-NVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 6789999999999997 666654
No 348
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=75.95 E-value=1.3 Score=42.49 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=19.9
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+.-++|.|++|||||++| ..|.+..
T Consensus 29 ~~~vll~G~~GtGKt~la-~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIA-SRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHH-HHHHHTS
T ss_pred CCCEEEECCCCCcHHHHH-HHHHHhc
Confidence 356789999999999998 6666543
No 349
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=75.79 E-value=1.3 Score=39.92 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=19.0
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++|+|++|+|||+|+ ..+.+..
T Consensus 10 ki~v~G~~~~GKSsli-~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLM-NQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHSC
T ss_pred EEEEECcCCCCHHHHH-HHHHcCC
Confidence 6789999999999997 6666543
No 350
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=75.76 E-value=1.3 Score=39.74 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|++|+|||+|+ ..+.+..
T Consensus 25 ki~~vG~~~~GKSsl~-~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLL-LAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHSC
T ss_pred EEEEECcCCCCHHHHH-HHHhcCC
Confidence 7889999999999997 6666543
No 351
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=75.68 E-value=1.3 Score=39.25 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.0
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|++|+|||+|+ ..+.+..
T Consensus 17 ~i~v~G~~~~GKssli-~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLL-LRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHSC
T ss_pred EEEEECCCCCCHHHHH-HHHHcCC
Confidence 7889999999999997 6666543
No 352
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=75.68 E-value=1.1 Score=44.74 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.0
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|+.+++|+|.+|+|||||+ +.++.++
T Consensus 7 r~~~VaIvG~~nvGKSTLl-n~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLL-NKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHH-HHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHCCC
Confidence 4568999999999999997 7887654
No 353
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=75.67 E-value=1.4 Score=39.76 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.3
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
=|++++|++|+|||+|+ ..+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli-~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALV-VRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHHS
T ss_pred eEEEEECCCCCCHHHHH-HHHHhC
Confidence 47899999999999997 666654
No 354
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=75.67 E-value=1.3 Score=39.70 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 23 ki~v~G~~~~GKSsli-~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLL-LQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 6789999999999997 666654
No 355
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=75.64 E-value=1.3 Score=40.08 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.1
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-++.++|++|+|||+|+ ..+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli-~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLL-HMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHH-HHHHHS
T ss_pred cEEEEECCCCCCHHHHH-HHHhcC
Confidence 48899999999999997 666653
No 356
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=75.53 E-value=1.4 Score=39.57 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.2
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++|+|++|+|||+|+ ..+.+.
T Consensus 16 ki~v~G~~~~GKSsli-~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALT-LQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 6789999999999997 666644
No 357
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=75.48 E-value=1.2 Score=44.01 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=20.0
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
..-++|.|++|||||++| ..+.+..
T Consensus 45 ~~~vLl~G~~GtGKT~la-~~la~~~ 69 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV-RALAALL 69 (350)
T ss_dssp GCCEEEECCGGGCTTHHH-HHHHHHS
T ss_pred CceEEEECCCCccHHHHH-HHHHHhC
Confidence 345899999999999998 6666543
No 358
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=75.47 E-value=1.6 Score=39.78 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=18.6
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+...+.|.|++|+||||++ ..+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~-~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQC-EKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHH
Confidence 3446789999999999998 55553
No 359
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=75.45 E-value=1.5 Score=42.33 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.5
Q ss_pred ccceeeeeccCCCCchHhHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAID 225 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~ 225 (539)
.|..++|.|++|+|||+|+++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALE 53 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 477799999999999999954
No 360
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=75.37 E-value=1.3 Score=40.13 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=19.8
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
=|++++|++|+|||+|+ ..+.+..
T Consensus 25 ~ki~vvG~~~~GKSsli-~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLA-HQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHH-HHHHHSC
T ss_pred EEEEEECCCCcCHHHHH-HHHHhCC
Confidence 37889999999999997 6676543
No 361
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=75.21 E-value=1.2 Score=42.03 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=19.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|.+|+|||||+ ..|.+..
T Consensus 31 ~i~lvG~~g~GKStli-n~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATG-NSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHH-HHHHTSC
T ss_pred EEEEECCCCCCHHHHH-HHHcCCC
Confidence 7889999999999997 7777544
No 362
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=75.21 E-value=7.5 Score=37.03 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=21.5
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
..+.++.+.|.||||.|+.+.+....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g 54 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG 54 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999877775553
No 363
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=75.14 E-value=2.2 Score=46.65 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=20.2
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.++-..|.|++|||||+++ ..++...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i-~~l~~~l 228 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTT-KAVADLA 228 (574)
T ss_dssp TCSEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHH-HHHHHHH
Confidence 4567889999999999997 4555443
No 364
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=75.05 E-value=1.4 Score=39.82 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++|+|++|+|||+|+ ..+.+.
T Consensus 30 ki~v~G~~~~GKSsli-~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFL-MRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHC
T ss_pred EEEEECcCCCCHHHHH-HHHHhC
Confidence 6789999999999997 666644
No 365
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=75.03 E-value=1.4 Score=46.23 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=25.6
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|-.+.+|.+++|+|.+|+|||||. .++.++.
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~-n~Ltg~~ 44 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFF-RAITKSV 44 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHH-HHHHHST
T ss_pred hccccCCCEEEEECCCCCCHHHHH-HHHHCCC
Confidence 335678999999999999999997 7787643
No 366
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.00 E-value=1.5 Score=43.14 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.1
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
..++|.|++|+|||+++ ..+++.
T Consensus 59 ~~~ll~G~~G~GKT~la-~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI-LALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHH-HHHHHH
T ss_pred CEEEEECCCCCCHHHHH-HHHHHH
Confidence 44899999999999998 566655
No 367
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=74.98 E-value=1.7 Score=41.06 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=19.1
Q ss_pred cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.++.|.|.+|+||||++ ..+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a-~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA-PKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHH
Confidence 457889999999999998 555543
No 368
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=74.93 E-value=1.6 Score=39.64 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=18.2
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+.|+|++|+|||+|+ ..+++.
T Consensus 8 kv~lvG~~~vGKSsL~-~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLA-NIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 7889999999999997 556543
No 369
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=74.81 E-value=1.3 Score=40.34 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=18.0
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++|+|++|+|||+|+ ..+.+.
T Consensus 27 ki~v~G~~~~GKSsLi-~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLL-HQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHH-HHHHC-
T ss_pred EEEEECcCCCCHHHHH-HHHHhC
Confidence 7889999999999997 666644
No 370
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=74.76 E-value=1.6 Score=42.53 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=17.6
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.|.|++|+||||++ ..+..
T Consensus 11 ~i~i~G~~GsGKsTla-~~la~ 31 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVS-RGLAR 31 (233)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 6889999999999998 55553
No 371
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=74.74 E-value=1.5 Score=40.15 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=19.0
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+++++|++|+|||+|+ ..+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~-~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLL-TLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHSS
T ss_pred EEEEECCCCCCHHHHH-HHHhcCC
Confidence 6789999999999997 6666543
No 372
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=74.68 E-value=11 Score=37.70 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=18.6
Q ss_pred ccceeeeeccCCCCchHhHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+|+.+++.|.+|+||||++ ..++
T Consensus 97 ~~~vi~i~G~~G~GKTT~~-~~la 119 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTA-GKLA 119 (297)
T ss_dssp SSEEEEEECSSCSSTTHHH-HHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHH
Confidence 4778889999999999998 3344
No 373
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=74.64 E-value=1.1 Score=44.49 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=21.1
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.|..+++.|++|||||+|+ ..+.+..
T Consensus 45 ~~~~vll~G~pGtGKT~la-~~la~~~ 70 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSV-NTLAKTM 70 (331)
T ss_dssp HTCCEEEESCCCHHHHHHH-HHHHHHT
T ss_pred cCCeEEEECCCCCcHHHHH-HHHHHHh
Confidence 4678999999999999998 5666543
No 374
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=74.62 E-value=1.3 Score=39.36 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.3
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|. ..+.+.
T Consensus 23 ~i~v~G~~~~GKSsli-~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTIL-YQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 6789999999999997 666643
No 375
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=74.48 E-value=1.5 Score=52.68 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=25.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.|-+||+++|.|++|+|||||+ ..+.
T Consensus 1097 ~isl~I~~Ge~vaIVG~SGsGKSTL~-~lL~ 1126 (1321)
T 4f4c_A 1097 GLSFSVEPGQTLALVGPSGCGKSTVV-ALLE 1126 (1321)
T ss_dssp EEEEEECTTCEEEEECSTTSSTTSHH-HHHT
T ss_pred ceeEEECCCCEEEEECCCCChHHHHH-HHHh
Confidence 34577889999999999999999997 4444
No 376
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=74.47 E-value=1.7 Score=40.56 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=19.2
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
++..+.|+|++|+||||++ ..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~-~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQC-ELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 4567889999999999998 55553
No 377
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=74.44 E-value=1.6 Score=44.15 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=19.9
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+..+++.|++|||||++| ..|++..
T Consensus 51 ~~~vll~GppGtGKT~la-~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA-ETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHH-HHHHHHT
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHc
Confidence 346889999999999998 6666543
No 378
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.42 E-value=1.5 Score=44.57 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=20.5
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
..-++|.|++|||||+|| ..|+++.
T Consensus 117 ~~~vLl~GppGtGKT~la-~aia~~~ 141 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG-KCIASQS 141 (357)
T ss_dssp CSEEEEESSTTSSHHHHH-HHHHHHT
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHc
Confidence 346899999999999998 6777654
No 379
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=74.35 E-value=1.1 Score=52.55 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|++++|+|++|+|||||+ ..|.
T Consensus 691 dVSl~I~~GeivaIiGpNGSGKSTLL-klLa 720 (986)
T 2iw3_A 691 DINFQCSLSSRIAVIGPNGAGKSTLI-NVLT 720 (986)
T ss_dssp EEEEEEETTCEEEECSCCCHHHHHHH-HHHT
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 44567889999999999999999998 5555
No 380
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=74.27 E-value=1.1 Score=39.66 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=9.3
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++++|++|+|||+|+ ..+.+.
T Consensus 10 ki~v~G~~~~GKssl~-~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVL-FRFSED 31 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 6889999999999997 555543
No 381
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=74.23 E-value=1.8 Score=42.83 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=21.0
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+-.+|.-+.|.|++|+||||++ ..+..
T Consensus 29 ~~~~~~livl~G~sGsGKSTla-~~L~~ 55 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLR-SAIFE 55 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHH-HHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 3445667889999999999998 55554
No 382
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=74.21 E-value=1.8 Score=38.09 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=17.3
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
++.|.|.+|+||||++ ..+..
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG-SLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHH
Confidence 5789999999999998 55544
No 383
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=74.20 E-value=1.7 Score=39.21 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=18.2
Q ss_pred cceeeeeccCCCCchHhHHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
...++|.|++|+||||++ ..+..
T Consensus 8 ~~~I~i~G~~GsGKST~~-~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVA-ALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHH
Confidence 346789999999999998 55543
No 384
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=74.00 E-value=1.5 Score=39.20 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=18.8
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
=+++++|++|+|||+|. ..+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~-~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTIL-YQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHH-HHHHTT
T ss_pred cEEEEECCCCCCHHHHH-HHHhcC
Confidence 37899999999999997 666643
No 385
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=73.91 E-value=1.8 Score=41.92 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=20.4
Q ss_pred cccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
++...++|.|++|+|||+++ ..++++
T Consensus 44 ~~~~~~ll~G~~G~GKT~la-~~l~~~ 69 (327)
T 1iqp_A 44 GSMPHLLFAGPPGVGKTTAA-LALARE 69 (327)
T ss_dssp TCCCEEEEESCTTSSHHHHH-HHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH-HHHHHH
Confidence 34446899999999999998 566655
No 386
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=73.89 E-value=1.2 Score=39.60 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=19.1
Q ss_pred cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.=|++++|++|+|||+|. ..+.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~-~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTIL-KKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHTTC
T ss_pred eeEEEEECCCCCCHHHHH-HHHhcC
Confidence 347899999999999997 555543
No 387
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=73.84 E-value=1.8 Score=41.45 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=18.5
Q ss_pred cceeeeeccCCCCchHhHHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+-++.|+|++|+||||++ ..+.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a-~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS-LNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CcEEEEECCCCCCHHHHH-HHHHH
Confidence 446889999999999998 55553
No 388
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=73.75 E-value=1.1 Score=47.24 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.6
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.++|+|++|+|||||+ .+|...
T Consensus 71 ~valvG~nGaGKSTLl-n~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFI-NTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHH-HHHHTC
T ss_pred EEEEECCCCCcHHHHH-HHHhCC
Confidence 9999999999999997 777753
No 389
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=73.74 E-value=1.6 Score=40.25 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.5
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+++.
T Consensus 28 ki~lvG~~~vGKSsLi-~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLV-RRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHHhC
Confidence 6789999999999997 666654
No 390
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=73.68 E-value=1.5 Score=39.68 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=19.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|++++|++|+|||+|+ ..+.+..
T Consensus 10 ki~v~G~~~~GKSsli-~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLL-LRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHCC
T ss_pred EEEEECCCCCCHHHHH-HHHhcCC
Confidence 7889999999999997 6666543
No 391
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=73.66 E-value=1.5 Score=43.86 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=20.7
Q ss_pred cccceeeeeccCCCCchHhHHHHHHH
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+|+.++++|+.|+||||++ ..++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~-~~LA~ 127 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTL-AKLAA 127 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHH-HHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHH
Confidence 47889999999999999998 44443
No 392
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=73.56 E-value=1.7 Score=38.97 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.7
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++++|++|+|||+|+ ..+.+.
T Consensus 20 ki~v~G~~~~GKssli-~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLL-MSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 6789999999999997 666654
No 393
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=73.52 E-value=1.9 Score=41.18 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=22.4
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
...+|..+.|.|++|+||||++ ..+.+
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~-~~l~~ 48 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVI-NEVYH 48 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHH-HHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHH-HHHHH
Confidence 3568899999999999999998 55553
No 394
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=73.44 E-value=1.9 Score=38.54 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=17.4
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
.++|.|++|+||||++ ..+.+
T Consensus 2 ~I~l~G~~GsGKsT~~-~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA-KKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 3689999999999998 56654
No 395
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=73.40 E-value=1.1 Score=40.17 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHhh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|+.++|++|+|||+|+ ..+.++.
T Consensus 19 ki~v~G~~~~GKSsl~-~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTII-NQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHH-HHHSCCC
T ss_pred EEEEECCCCCCHHHHH-HHHhcCC
Confidence 6789999999999997 5665443
No 396
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=73.38 E-value=1.5 Score=39.46 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=17.9
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++++|++|+|||+|. ..+.+.
T Consensus 22 ki~~~G~~~~GKssl~-~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLV-VSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHH-HHHHC-
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 6789999999999997 566644
No 397
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=73.31 E-value=1.8 Score=40.10 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=17.4
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
++.|.|++|+||||++ ..+..
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA-QFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5789999999999998 55554
No 398
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=73.28 E-value=1.8 Score=38.12 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=17.3
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
.+.|.|.+|+||||++ ..+..
T Consensus 4 ~I~l~G~~GsGKsT~a-~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG-RELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHH
Confidence 5789999999999998 55554
No 399
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=73.24 E-value=1.7 Score=39.62 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
++.++|++|+|||+|+ ..+++.
T Consensus 9 ki~vvG~~~~GKTsli-~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLF-VRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 6789999999999997 566644
No 400
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=73.22 E-value=1.8 Score=38.58 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.0
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
=+++++|++|+|||+|. ..+.+.
T Consensus 9 ~ki~vvG~~~~GKSsli-~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLV-LRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHH-HHHHHS
T ss_pred eEEEEECCCCCcHHHHH-HHHHcC
Confidence 37899999999999997 666653
No 401
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=73.11 E-value=1.7 Score=39.41 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=18.6
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++++|++|+|||+|+ ..+++.
T Consensus 22 ~i~v~G~~~~GKSsli-~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLL-VRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHC
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 6789999999999997 666644
No 402
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.10 E-value=1.5 Score=42.45 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=19.3
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.-.++|.|++|||||+++ ..+++.
T Consensus 57 kkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp TCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred cccEEEEECCCCCCHHHHH-HHHHHH
Confidence 3345899999999999998 455554
No 403
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=72.89 E-value=1.9 Score=38.82 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=16.6
Q ss_pred eeeeccCCCCchHhHHHHHHH
Q psy13776 209 ELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.|.|++|+||||++ ..+.+
T Consensus 3 I~l~G~~GsGKsT~~-~~L~~ 22 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI-QLLAQ 22 (197)
T ss_dssp EEEECSTTSSHHHHH-HHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHH
Confidence 679999999999998 55554
No 404
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.77 E-value=1.7 Score=43.40 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=17.9
Q ss_pred eeeeccCCCCchHhHHHHHHHh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.++.|++|+||||++ ..+++.
T Consensus 49 ~ll~Gp~G~GKTtla-~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTI-VALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHH-HHHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHHH
Confidence 799999999999998 566654
No 405
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=72.75 E-value=1.8 Score=40.54 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=17.5
Q ss_pred eeeeccCCCCchHhHHHHHHHhh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+.|.||+|+|||||+ ..++.+.
T Consensus 4 IVi~GPSG~GK~Tl~-~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL-KKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHH-HHHHHHC
T ss_pred EEEECCCCCCHHHHH-HHHHHhC
Confidence 358899999999998 6666553
No 406
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=72.73 E-value=1.8 Score=41.02 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=19.9
Q ss_pred ccceeeeeccCCCCchHhHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
-|.-++|.|++|+||||+++..+-
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467789999999999999965544
No 407
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=72.62 E-value=1.7 Score=47.59 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=22.9
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+-.|+.++|+|++|||||||+ ..|++.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla-r~ia~~ 83 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG-QAMAEL 83 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH-HHHHHT
T ss_pred cccCCCEEEEEeCCCCCHHHHH-HHHhcc
Confidence 3456789999999999999998 666654
No 408
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=72.62 E-value=16 Score=35.33 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
++.++|.+|+|||||. ..+.+.
T Consensus 3 kI~lvG~~n~GKSTL~-n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLF-NALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHH-HHHHCC
Confidence 6889999999999997 666644
No 409
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=72.53 E-value=1.5 Score=47.74 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=22.9
Q ss_pred eeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 200 LVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 200 l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|-..-+|+..+|+|++|+|||||+ ..|.
T Consensus 19 l~~~~~Gei~gLiGpNGaGKSTLl-kiL~ 46 (538)
T 3ozx_A 19 LPTPKNNTILGVLGKNGVGKTTVL-KILA 46 (538)
T ss_dssp CCCCCTTEEEEEECCTTSSHHHHH-HHHT
T ss_pred CCCCCCCCEEEEECCCCCcHHHHH-HHHh
Confidence 344568999999999999999997 5554
No 410
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=72.52 E-value=1.2 Score=39.99 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=18.0
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 23 ki~v~G~~~~GKSsli-~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTII-NKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHH-HHTSCG
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 7889999999999997 555544
No 411
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=72.50 E-value=1.7 Score=39.64 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.7
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 27 ki~vvG~~~~GKSsli-~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLL-IVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 7899999999999997 666654
No 412
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=72.48 E-value=2.2 Score=46.00 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=23.9
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
.=+.+-+ +..+|+|++|+|||||+ .+|+.
T Consensus 23 vsl~i~~-e~~~liG~nGsGKSTLl-~~l~G 51 (483)
T 3euj_A 23 RTFDFDE-LVTTLSGGNGAGKSTTM-AGFVT 51 (483)
T ss_dssp EEEECCS-SEEEEECCTTSSHHHHH-HHHHH
T ss_pred eEEEEcc-ceEEEECCCCCcHHHHH-HHHhc
Confidence 3456778 99999999999999998 66664
No 413
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=72.47 E-value=1.9 Score=40.85 Aligned_cols=21 Identities=19% Similarity=0.291 Sum_probs=17.1
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
++.|+|++|+||+|.+ ..|+.
T Consensus 2 ~Iil~GpPGsGKgTqa-~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA-KRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 4679999999999998 55553
No 414
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=72.43 E-value=1.5 Score=40.17 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=18.2
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++|+|++|+|||+|+ ..+.+.
T Consensus 27 ki~vvG~~~~GKSsLi-~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFL-YRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHH-HHHHCS
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 6789999999999997 566543
No 415
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=72.40 E-value=1.8 Score=41.81 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=17.1
Q ss_pred eeeeccCCCCchHhHHHHHHHh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.|.|++|+|||||+ ..++..
T Consensus 4 i~I~G~~GSGKSTla-~~La~~ 24 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA-IQIAQE 24 (253)
T ss_dssp EEEECCTTSSHHHHH-HHHHHH
T ss_pred EEEECCCCcCHHHHH-HHHHhc
Confidence 578999999999998 555543
No 416
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=72.32 E-value=0.85 Score=46.72 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=24.3
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+.+| +.+|+|+.|+|||||+ +.|.
T Consensus 53 ~v~l~~~~G-~~~lvG~NGaGKStLl-~aI~ 81 (415)
T 4aby_A 53 QLELELGGG-FCAFTGETGAGKSIIV-DALG 81 (415)
T ss_dssp EEEEECCSS-EEEEEESHHHHHHHHT-HHHH
T ss_pred eEEEecCCC-cEEEECCCCCCHHHHH-HHHH
Confidence 344688899 9999999999999997 6664
No 417
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=72.29 E-value=2 Score=41.83 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=19.3
Q ss_pred cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+-+.|.|++|+|||+|+ ..+.++
T Consensus 31 ~~~v~i~G~~G~GKT~Ll-~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLL-RAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCeEEEECCCcCCHHHHH-HHHHHH
Confidence 467899999999999998 455543
No 418
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=72.20 E-value=1.1 Score=41.47 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=19.0
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.++|.|++|+|||||+ ..|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~-~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLI-TRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHH
Confidence 46789999999999998 666644
No 419
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=72.16 E-value=1.4 Score=38.80 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=17.6
Q ss_pred cceeeeeccCCCCchHhHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+++++|++|+|||||+ ..+.
T Consensus 18 ~~~i~v~G~~~~GKssli-~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTIL-YRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHH-HHTC
T ss_pred ccEEEEECCCCCCHHHHH-HHHh
Confidence 347899999999999997 4443
No 420
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=71.93 E-value=1.4 Score=47.61 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=23.1
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.+-+|+.++|.|+.|+||||++ .++++
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL-~aL~~ 282 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTL-NAIMM 282 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHH-HHHGG
T ss_pred HHHhCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 34568999999999999999997 55554
No 421
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=71.73 E-value=1.9 Score=39.23 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 27 ki~vvG~~~~GKSsli-~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLL-IVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 7889999999999997 666654
No 422
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=71.69 E-value=2 Score=43.58 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=19.2
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
..+++.|++|||||++| ..+++..
T Consensus 73 ~~ill~Gp~GtGKT~la-~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMA-QTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHH-HHHHHHT
T ss_pred CCEEEECCCCCCHHHHH-HHHHHHh
Confidence 46889999999999998 5666543
No 423
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=71.65 E-value=1.4 Score=39.85 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=17.5
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
|++++|++|+|||+|+ ..+.+
T Consensus 28 ki~vvG~~~~GKSsLi-~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLM-ERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHH-HHHCC
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 6789999999999997 55553
No 424
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=71.60 E-value=1.8 Score=49.35 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=23.2
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+-.|..++|.|++|||||+|+ ..|++..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLa-rala~~l 262 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIA-RAVANET 262 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHH-HHHHHTT
T ss_pred CCCCCeEEEECcCCCCHHHHH-HHHHHHc
Confidence 456788999999999999998 6676553
No 425
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=71.50 E-value=1.9 Score=45.40 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.1
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.-++|.|++|||||+|| ..+++..
T Consensus 168 ~~vLL~GppGtGKT~lA-~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA-KAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHH-HHHHHHC
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHc
Confidence 45799999999999999 6777654
No 426
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=71.38 E-value=2.1 Score=41.30 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=19.9
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+....++.|++|+|||+++ ..++++
T Consensus 37 ~~~~~ll~G~~G~GKt~la-~~l~~~ 61 (319)
T 2chq_A 37 NIPHLLFSGPPGTGKTATA-IALARD 61 (319)
T ss_dssp CCCCEEEESSSSSSHHHHH-HHHHHH
T ss_pred CCCeEEEECcCCcCHHHHH-HHHHHH
Confidence 3345899999999999998 566655
No 427
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=71.37 E-value=2 Score=39.70 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 30 ki~vvG~~~vGKSsLi-~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALL-HVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 7889999999999997 566643
No 428
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=71.33 E-value=2.1 Score=45.14 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=23.3
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.-+|+-++|.|+.|+||||++ ..|++..
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL-~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTL-YAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHH-HHHHhhc
Confidence 367889999999999999998 6676544
No 429
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=71.30 E-value=1.9 Score=39.88 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=18.3
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+.++|++++|||+|+ ..+++.
T Consensus 29 ki~vvG~~~vGKSsL~-~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAML-QVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 6779999999999997 666654
No 430
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=71.20 E-value=1.8 Score=39.96 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=18.0
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|++++|++|+|||+|+ ..+.+.
T Consensus 36 ki~vvG~~~vGKSsli-~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLL-MVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHH-HHHHC-
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 6889999999999997 666643
No 431
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=71.17 E-value=2.1 Score=45.01 Aligned_cols=26 Identities=42% Similarity=0.510 Sum_probs=20.9
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+..+++.|++|||||++| ..+++...
T Consensus 63 ~~~iLl~GppGtGKT~la-~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA-LAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHH-HHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHH-HHHHHHhC
Confidence 346899999999999999 56776543
No 432
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=71.08 E-value=2.4 Score=37.67 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=17.7
Q ss_pred ceeeeeccCCCCchHhHHHHHHH
Q psy13776 207 QRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~n 229 (539)
..+.|.|++|+||||++ ..+..
T Consensus 7 ~~I~l~G~~GsGKsT~~-~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC-ANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHH-HHHHH
T ss_pred cEEEEECCCCCCHHHHH-HHHHH
Confidence 45789999999999998 45543
No 433
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=71.01 E-value=2.2 Score=43.69 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=21.1
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+.-++|.|++|||||+|| ..|++...
T Consensus 148 ~~~vLL~GppGtGKT~la-~aia~~~~ 173 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA-KAVAAESN 173 (389)
T ss_dssp CSEEEEESSTTSCHHHHH-HHHHHHTT
T ss_pred CceEEEECCCCCCHHHHH-HHHHHhhc
Confidence 456899999999999999 67776543
No 434
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=70.89 E-value=2 Score=39.14 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
++.++|++|+|||+|+ ..+.+.
T Consensus 11 ki~i~G~~~~GKTsli-~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCML-ICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 7889999999999997 566644
No 435
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=70.81 E-value=1.8 Score=39.23 Aligned_cols=22 Identities=27% Similarity=0.665 Sum_probs=17.9
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
|+.++|++|+|||+|+ ..+.++
T Consensus 22 ki~~vG~~~vGKTsLi-~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQ-KVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHH-HHHHSC
T ss_pred EEEEECCCCCCHHHHH-HHHHhc
Confidence 6789999999999996 555543
No 436
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=70.78 E-value=1.7 Score=39.65 Aligned_cols=16 Identities=31% Similarity=0.748 Sum_probs=14.9
Q ss_pred eeeeeccCCCCchHhH
Q psy13776 208 RELIIGDRQTGKTALA 223 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa 223 (539)
++.++|++|+|||+|+
T Consensus 25 ki~vvG~~~vGKSsLi 40 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLA 40 (195)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6789999999999997
No 437
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=70.74 E-value=2.3 Score=40.75 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=17.6
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
.++|.|++|+||||++ ..+..
T Consensus 24 iI~I~G~~GSGKST~a-~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC-AKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5789999999999998 55554
No 438
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=70.41 E-value=2 Score=39.22 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=18.7
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
=|++++|++|+|||+|+ ..+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi-~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLL-ISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEEECcCCCCHHHHH-HHHHhC
Confidence 37889999999999997 556543
No 439
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=70.32 E-value=1.7 Score=38.82 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=16.8
Q ss_pred eeeeeccCCCCchHhHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~ 228 (539)
++.++|++|+|||+|+ ..+.
T Consensus 18 ki~ivG~~~vGKSsL~-~~l~ 37 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLL-KQLA 37 (181)
T ss_dssp EEEEEESTTSSHHHHH-HHHC
T ss_pred EEEEECCCCCCHHHHH-HHHh
Confidence 7889999999999997 4444
No 440
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=69.91 E-value=2.2 Score=43.49 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=17.1
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
-++|.|++|+||||++ ..|..
T Consensus 94 iigI~GpsGSGKSTl~-~~L~~ 114 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS-RVLKA 114 (321)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 4689999999999998 55543
No 441
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=69.59 E-value=2.6 Score=38.22 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.6
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
.++|.|++|+||||++ ..+..
T Consensus 4 ~i~i~G~~GsGKst~~-~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA-RRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5789999999999998 55554
No 442
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=69.50 E-value=1.8 Score=40.28 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=18.1
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++++|++|+|||+|+ ..++++
T Consensus 31 kI~vvG~~~vGKSsLi-n~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFM-NIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHH-HHHTTT
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 6789999999999997 555543
No 443
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=69.38 E-value=1.9 Score=41.07 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=19.8
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
-+++|+|.+|+|||||. ..+++..
T Consensus 23 ~~I~lvG~~g~GKStl~-n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAG-NSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHH-HHHHTSC
T ss_pred eEEEEECCCCCCHHHHH-HHHhCCC
Confidence 37899999999999997 7777544
No 444
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=69.30 E-value=2.2 Score=47.18 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=22.8
Q ss_pred eeecccc-----ceeeeeccCCCCchHhHHHHHHH
Q psy13776 200 LVPIGRG-----QRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 200 l~pIGrG-----QR~lI~g~~gtGKTtLa~~~I~n 229 (539)
-+.+-+| +..+|+|++|+|||||+ .+|..
T Consensus 367 sl~v~~G~~~~GEiv~iiG~NGsGKSTLl-k~l~G 400 (608)
T 3j16_B 367 VLNVEEGEFSDSEILVMMGENGTGKTTLI-KLLAG 400 (608)
T ss_dssp EEEECCEECCTTCEEEEESCTTSSHHHHH-HHHHT
T ss_pred EEEEecCccccceEEEEECCCCCcHHHHH-HHHhc
Confidence 3555555 78999999999999998 66653
No 445
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=68.91 E-value=2.6 Score=38.78 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=18.1
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-++.|+|++|+|||||+ ..+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~-~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLI-EKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHH-HHHHHH
T ss_pred eEEEEEcCCCCCHHHHH-HHHHHH
Confidence 36789999999999998 455543
No 446
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=68.61 E-value=2.7 Score=39.26 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.3
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
.++|.|+.|+||||++ ..+..
T Consensus 14 iIgltG~~GSGKSTva-~~L~~ 34 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC-EILKN 34 (192)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5789999999999998 55543
No 447
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.48 E-value=2.7 Score=40.62 Aligned_cols=25 Identities=20% Similarity=0.229 Sum_probs=19.6
Q ss_pred ccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+....+|.|++|+|||+++ ..++++
T Consensus 41 ~~~~~ll~G~~G~GKt~la-~~l~~~ 65 (323)
T 1sxj_B 41 NMPHMIISGMPGIGKTTSV-HCLAHE 65 (323)
T ss_dssp CCCCEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH-HHHHHH
Confidence 3334899999999999998 566654
No 448
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=68.26 E-value=2.3 Score=37.86 Aligned_cols=20 Identities=45% Similarity=0.768 Sum_probs=17.2
Q ss_pred eeeeeccCCCCchHhHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~ 228 (539)
--+|+|+.|+|||+|+ +.|.
T Consensus 25 ~~~I~G~NGsGKStil-~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL-DAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHH-HHHH
T ss_pred eEEEECCCCCCHHHHH-HHHH
Confidence 4589999999999997 7775
No 449
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=68.20 E-value=1.9 Score=39.36 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=17.2
Q ss_pred eeeeeccCCCCchHhHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~ 228 (539)
+++++|++|+|||+|+ ..+.
T Consensus 27 ki~lvG~~~vGKSsLi-~~l~ 46 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLL-HMLK 46 (198)
T ss_dssp EEEEEEETTSSHHHHH-HHHS
T ss_pred EEEEECCCCCCHHHHH-HHHh
Confidence 7899999999999997 5554
No 450
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=68.18 E-value=1.4 Score=39.64 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=4.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++++|++|+|||+|+ ..+.+.
T Consensus 22 ~i~v~G~~~~GKssli-~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALI-SMFTSK 43 (208)
T ss_dssp EEEEC------------------
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 7889999999999997 556544
No 451
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=68.07 E-value=1.9 Score=46.50 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=21.5
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+-.|..++|.|++|||||+|| ..|.+.
T Consensus 38 l~~~~~VLL~GpPGtGKT~LA-raLa~~ 64 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIA-RRLKFA 64 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHH-HHGGGG
T ss_pred HhcCCeeEeecCchHHHHHHH-HHHHHH
Confidence 345678999999999999998 556543
No 452
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=68.01 E-value=2.3 Score=50.90 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=24.9
Q ss_pred eeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 199 SLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 199 ~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.=+.|-+|++++|.|++|+|||||+ ..|.
T Consensus 1052 vsl~i~~Ge~v~ivG~sGsGKSTl~-~~l~ 1080 (1284)
T 3g5u_A 1052 LSLEVKKGQTLALVGSSGCGKSTVV-QLLE 1080 (1284)
T ss_dssp CCEEECSSSEEEEECSSSTTHHHHH-HHHT
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 3467889999999999999999998 5555
No 453
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=67.96 E-value=2.6 Score=41.13 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=19.0
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+-+.|.|++|+|||+|+ ..+.++.
T Consensus 31 ~~v~i~G~~G~GKT~L~-~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII-KIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHHH-HHHHHhc
Confidence 46789999999999998 5555543
No 454
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=67.95 E-value=2.6 Score=39.03 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=18.6
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
++.|+|++++|||+|+ ..+.+.
T Consensus 15 ki~v~G~~~vGKSsli-~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLL-SRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHH-HHHHHC
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 6889999999999997 666654
No 455
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=67.88 E-value=2.4 Score=50.73 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=25.1
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
|.=+.+-+|++.+|+|++|+|||||+ ..|.
T Consensus 408 ~isl~i~~G~~~~ivG~sGsGKSTl~-~ll~ 437 (1284)
T 3g5u_A 408 GLNLKVKSGQTVALVGNSGCGKSTTV-QLMQ 437 (1284)
T ss_dssp EEEEEECTTCEEEEECCSSSSHHHHH-HHTT
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHH-HHHh
Confidence 34568889999999999999999997 4444
No 456
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=67.85 E-value=2.3 Score=42.40 Aligned_cols=20 Identities=20% Similarity=0.544 Sum_probs=16.7
Q ss_pred eeeeccCCCCchHhHHHHHHH
Q psy13776 209 ELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~n 229 (539)
++|+|++|+|||||+ .+|..
T Consensus 21 I~lvG~nG~GKSTLl-~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLI-NSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHH-HHHHC
T ss_pred EEEECCCCCCHHHHH-HHHhC
Confidence 389999999999997 66554
No 457
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=67.79 E-value=2.7 Score=40.98 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=17.9
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.+|+|++|+||||++ ..+.+
T Consensus 10 ~~~~~G~pGsGKsT~a-~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQA-NFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHH-HHHHH
T ss_pred ceeeECCCCCCHHHHH-HHHHH
Confidence 7899999999999998 55553
No 458
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=67.59 E-value=2.4 Score=41.08 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=18.4
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+++++|++|+|||||. ..+.+.
T Consensus 5 ~i~lvG~~g~GKTTL~-n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIF-NALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 6889999999999997 666543
No 459
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=67.58 E-value=2.9 Score=44.22 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=19.9
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
....+|+|++|||||+++ ..+++..
T Consensus 201 ~~~~LL~G~pG~GKT~la-~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA-EGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 345789999999999998 6666553
No 460
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=67.38 E-value=8.4 Score=39.04 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=19.4
Q ss_pred cccceeeeeccCCCCchHhHHHHHHH
Q psy13776 204 GRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
++.-+++|.|.+|+|||||+ ..++.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~-~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAI-EALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCceEEEEECCCCCCHHHHH-HHHHH
Confidence 34557899999999999998 44443
No 461
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=67.34 E-value=3.1 Score=40.20 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=19.1
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
++..+.|.|.+|+||||++ ..+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla-~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFS-KNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH-HHHHH
Confidence 4556889999999999998 55553
No 462
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=67.22 E-value=2.7 Score=41.83 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=20.3
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
+.-++|.|++|||||++| ..|.+..
T Consensus 25 ~~~vLi~Ge~GtGKt~lA-r~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVA-RALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHH-HHHHHHS
T ss_pred CCcEEEECCCCchHHHHH-HHHHHhC
Confidence 456789999999999998 6677643
No 463
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=67.20 E-value=17 Score=38.31 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.0
Q ss_pred ccceeeeeccCCCCchHhHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+|+.+++.|..|+||||++ ..++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~-~~LA 119 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTA-AKLA 119 (425)
T ss_dssp SSEEEEEECCTTSSHHHHH-HHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHH
Confidence 6788899999999999998 3444
No 464
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=67.06 E-value=3.3 Score=43.00 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=20.8
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
|-+++|+|.+++|||||. ..+.++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~-n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLF-NALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHH-HHHHHTC
T ss_pred CCEEEEECCCCCCHHHHH-HHHHCCC
Confidence 468899999999999997 7777644
No 465
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=67.03 E-value=2.2 Score=38.57 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.2
Q ss_pred ceeeeeccCCCCchHhHHHHHH
Q psy13776 207 QRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~ 228 (539)
=|++++|++|+|||+|+ ..+.
T Consensus 30 ~ki~v~G~~~vGKSsLi-~~l~ 50 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTIL-YKLK 50 (192)
T ss_dssp EEEEEEESTTSSHHHHH-HHHC
T ss_pred cEEEEECCCCCCHHHHH-HHHH
Confidence 36889999999999997 4444
No 466
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=66.90 E-value=3 Score=42.15 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=23.4
Q ss_pred eeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 201 VPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 201 ~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
..+++|..++|.|.+|+||||++ ..++.
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~-~~l~~ 78 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFL-EAFGM 78 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHH-HHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHH-HHHHH
Confidence 34688999999999999999997 55554
No 467
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=66.71 E-value=3.1 Score=39.09 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=17.0
Q ss_pred eeeeeccCCCCchHhHHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~n 229 (539)
++.|.|++|+||||++ ..+..
T Consensus 2 ~I~l~G~~GsGKsT~a-~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG-NLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 4689999999999998 55543
No 468
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=66.65 E-value=2.4 Score=44.61 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=23.0
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-+..|.+++|+|.+|+|||||. ..+.++
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~-n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFF-NVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHH-HHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHH-HHHHCC
Confidence 4567889999999999999997 677654
No 469
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=66.47 E-value=3.2 Score=38.35 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=17.6
Q ss_pred cceeeeeccCCCCchHhHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
+-.++|.|++|+||||++ ..+.
T Consensus 4 ~~~I~i~G~~GSGKST~~-~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVA-NAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHH
Confidence 346789999999999998 4444
No 470
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.46 E-value=3.1 Score=44.53 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=20.5
Q ss_pred cceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
..-++|.|++|||||++| ..++++.
T Consensus 77 ~~~lLL~GppGtGKTtla-~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA-HLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHH-HHHHHHT
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHc
Confidence 357899999999999998 6677654
No 471
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=66.31 E-value=9.8 Score=40.17 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=14.6
Q ss_pred ceeeeeccCCCCchHhHH
Q psy13776 207 QRELIIGDRQTGKTALAI 224 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~ 224 (539)
..+.+.|..|+||||++.
T Consensus 101 ~vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 355677889999999984
No 472
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=66.29 E-value=2.4 Score=38.78 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=16.6
Q ss_pred eeeeeccCCCCchHhHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~ 228 (539)
|++|+|++|+|||+|+ ..++
T Consensus 13 ki~vvG~~~~GKSsli-~~l~ 32 (218)
T 4djt_A 13 KICLIGDGGVGKTTYI-NRVL 32 (218)
T ss_dssp EEEEECCTTSSHHHHH-CBCT
T ss_pred EEEEECCCCCCHHHHH-HHHh
Confidence 6789999999999997 4444
No 473
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=66.11 E-value=2.3 Score=46.58 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=23.3
Q ss_pred eccccceeeeeccCCCCchHhHHHHHHHh
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+-+|+.+.|+|.+|+|||||+ ..+...
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLa-r~La~~ 392 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLA-RALAAR 392 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHH-HHHHHH
T ss_pred ccccceEEEEECCCCChHHHHH-HHHHHh
Confidence 4668999999999999999998 555543
No 474
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=65.94 E-value=2.2 Score=37.92 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.1
Q ss_pred ceeeeeccCCCCchHhHHHHHH
Q psy13776 207 QRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~ 228 (539)
=|++++|++++|||+|. ..+.
T Consensus 23 ~~i~v~G~~~~GKssli-~~l~ 43 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSIL-YRLH 43 (189)
T ss_dssp EEEEEEEETTSSHHHHH-HHTC
T ss_pred eEEEEECCCCCCHHHHH-HHHH
Confidence 37899999999999997 4443
No 475
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=65.83 E-value=2.4 Score=39.88 Aligned_cols=20 Identities=35% Similarity=0.689 Sum_probs=17.0
Q ss_pred eeeeeccCCCCchHhHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~ 228 (539)
|+.|+|++|+|||+|+ ..++
T Consensus 39 kVvlvG~~~vGKSSLl-~r~~ 58 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLA-NIFA 58 (211)
T ss_dssp EEEEECCTTSSHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHH-HHHH
Confidence 7889999999999997 4454
No 476
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=65.72 E-value=3.7 Score=41.86 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=20.3
Q ss_pred ccceeeeeccCCCCchHhHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.|.-++|.|++|+||||+++..+-
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 678899999999999999965443
No 477
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=65.72 E-value=3.2 Score=42.30 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=20.6
Q ss_pred cceeeeeccCCCCchHhHHHHHHHh
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.+++|+|.+|+|||||+ +.++..
T Consensus 74 ~~~v~lvG~pgaGKSTLl-n~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFI-EYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred ceEEEEEcCCCCCHHHHH-HHHHHH
Confidence 668899999999999997 777754
No 478
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=65.64 E-value=2.8 Score=50.36 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=25.6
Q ss_pred eeeeeccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 198 DSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 198 D~l~pIGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
|.=+.|-+|++.+|+|++|+|||||+ ..|..
T Consensus 436 ~isl~i~~G~~vaivG~sGsGKSTll-~ll~~ 466 (1321)
T 4f4c_A 436 GMNLRVNAGQTVALVGSSGCGKSTII-SLLLR 466 (1321)
T ss_dssp EEEEEECTTCEEEEEECSSSCHHHHH-HHHTT
T ss_pred ceEEeecCCcEEEEEecCCCcHHHHH-HHhcc
Confidence 33467889999999999999999998 55553
No 479
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=65.42 E-value=2.5 Score=38.92 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=15.8
Q ss_pred eeeeeccCCCCchHhHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDT 226 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~ 226 (539)
|++++|++|+|||+|+ ..
T Consensus 17 ki~v~G~~~~GKSsli-~~ 34 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFV-KR 34 (221)
T ss_dssp EEEEEECTTSSHHHHH-TT
T ss_pred EEEEECCCCCCHHHHH-HH
Confidence 6789999999999997 44
No 480
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=65.29 E-value=14 Score=38.34 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=17.0
Q ss_pred cceeeeeccCCCCchHhHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
..-+.|.|.+|+||||++ ..+.
T Consensus 258 ~~lIil~G~pGSGKSTla-~~L~ 279 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFI-QEHL 279 (416)
T ss_dssp CCEEEEESCTTSSHHHHH-HHHT
T ss_pred CEEEEEECCCCCCHHHHH-HHHH
Confidence 445678899999999998 4443
No 481
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=65.28 E-value=3.2 Score=39.85 Aligned_cols=21 Identities=14% Similarity=0.487 Sum_probs=16.7
Q ss_pred eeeeccCCCCchHhHHHHHHHh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.|+|++|+||+|.+ ..|+..
T Consensus 32 I~llGpPGsGKgTqa-~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQC-EKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHH-HHHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHHH
Confidence 468999999999998 556543
No 482
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=65.17 E-value=3.8 Score=41.96 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=20.2
Q ss_pred eccccceeeeeccCCCCchHhHHHHHH
Q psy13776 202 PIGRGQRELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 202 pIGrGQR~lI~g~~gtGKTtLa~~~I~ 228 (539)
.+..| -.+|+|+.|+|||||. ++|.
T Consensus 20 ~~~~g-~~~i~G~NGaGKTTll-~ai~ 44 (365)
T 3qf7_A 20 EFQSG-ITVVEGPNGAGKSSLF-EAIS 44 (365)
T ss_dssp ECCSE-EEEEECCTTSSHHHHH-HHHH
T ss_pred ecCCC-eEEEECCCCCCHHHHH-HHHH
Confidence 34456 5679999999999997 8776
No 483
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=64.99 E-value=2.8 Score=46.06 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=16.7
Q ss_pred eeeeeccCCCCchHhHHHHHH
Q psy13776 208 RELIIGDRQTGKTALAIDTII 228 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~ 228 (539)
=.+|.||||||||+.+...|.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~ 227 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIIL 227 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 358999999999988765554
No 484
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=64.98 E-value=3.4 Score=43.02 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=21.0
Q ss_pred cccce--eeeeccCCCCchHhHHHHHHHhh
Q psy13776 204 GRGQR--ELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 204 GrGQR--~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
-.|++ +.|+|.+|+||||++ ..+++..
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~-~~la~~l 48 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIA-EELCQII 48 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHH-HHHHHHh
Confidence 35666 899999999999998 5565543
No 485
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=64.76 E-value=23 Score=35.21 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=17.1
Q ss_pred eeeeccCCCCchHhHHHHHHHh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.++.|++|+|||+++ ..+++.
T Consensus 27 ~L~~G~~G~GKt~~a-~~la~~ 47 (334)
T 1a5t_A 27 LLIQALPGMGDDALI-YALSRY 47 (334)
T ss_dssp EEEECCTTSCHHHHH-HHHHHH
T ss_pred EEEECCCCchHHHHH-HHHHHH
Confidence 788999999999998 455544
No 486
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=64.57 E-value=3.7 Score=42.68 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.1
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHH
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+..|+-.+|+|++|+|||+|+ ++|.-
T Consensus 23 ~~~~~~~~i~G~nG~GKstll-~ai~~ 48 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMM-DAISF 48 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHH-HHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHH-HHHHh
Confidence 556888999999999999997 77763
No 487
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=64.45 E-value=3.2 Score=44.58 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=19.9
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.-++|.|++|||||++| ..|.+..
T Consensus 239 ~~vLL~GppGtGKT~lA-raia~~~ 262 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIA-RAVANET 262 (489)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHC
T ss_pred CcEEEECcCCCCHHHHH-HHHHHHh
Confidence 34899999999999998 6776654
No 488
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=64.30 E-value=2.7 Score=41.93 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.3
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
.++.|+|.+|+|||||+ ..+++++
T Consensus 8 g~V~ivG~~nvGKSTLl-n~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLL-NNLLGVK 31 (301)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHTSC
T ss_pred CEEEEECCCCCCHHHHH-HHHhCCc
Confidence 36899999999999997 7777654
No 489
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=64.03 E-value=7.5 Score=50.12 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=18.7
Q ss_pred cccceeeeeccCCCCchHhHHH
Q psy13776 204 GRGQRELIIGDRQTGKTALAID 225 (539)
Q Consensus 204 GrGQR~lI~g~~gtGKTtLa~~ 225 (539)
-.|..++++|++|||||+++-.
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~ 1286 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNN 1286 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHHHH
Confidence 3567899999999999999843
No 490
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=64.00 E-value=19 Score=38.89 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=17.5
Q ss_pred cceeeeeccCCCCchHhHHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
...+.|.|.+|+||||++ ..++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~-~kLA~ 123 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTC-SKLAY 123 (504)
T ss_dssp -EEEEEECSTTSSHHHHH-HHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHH
Confidence 446789999999999998 44553
No 491
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=63.46 E-value=2.9 Score=40.34 Aligned_cols=24 Identities=13% Similarity=0.491 Sum_probs=19.9
Q ss_pred ceeeeeccCCCCchHhHHHHHHHhh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQK 231 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq~ 231 (539)
-+++|+|++++|||||+ ..++++.
T Consensus 27 ~~i~vvG~~~~GKSSLl-n~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVL-ENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHH-HHHHTSC
T ss_pred CeEEEEeCCCCCHHHHH-HHHHCCC
Confidence 37899999999999997 7777543
No 492
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=63.43 E-value=2.8 Score=47.71 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=23.8
Q ss_pred ccccceeeeeccCCCCchHhHHHHHHHhhh
Q psy13776 203 IGRGQRELIIGDRQTGKTALAIDTIINQKS 232 (539)
Q Consensus 203 IGrGQR~lI~g~~gtGKTtLa~~~I~nq~~ 232 (539)
+-.|..++++|++|||||+|+ ..|++...
T Consensus 508 ~~~~~~vLL~GppGtGKT~La-kala~~~~ 536 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLA-KAIANECQ 536 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHH-HHHHHHHT
T ss_pred CCCCceeEEECCCCCCHHHHH-HHHHHHhC
Confidence 346778999999999999998 77776653
No 493
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=63.43 E-value=3.2 Score=41.22 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=15.5
Q ss_pred cceeeeeccCCCCchHhHHHHHHH
Q psy13776 206 GQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 206 GQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+-.++|.|++|+||||++ ..+.+
T Consensus 5 ~~iIgItG~sGSGKSTva-~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVK-HTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHH
Confidence 345799999999999998 55554
No 494
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=63.30 E-value=3.9 Score=37.45 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=18.4
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-++.|+|.+|+|||||+ ..+++.
T Consensus 31 ~~i~i~G~~g~GKTTl~-~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLI-ERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHH-HHHHHH
T ss_pred eEEEEEcCCCCCHHHHH-HHHHHH
Confidence 35789999999999998 556554
No 495
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=62.87 E-value=2 Score=39.30 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.0
Q ss_pred eeeeccCCCCchHhHHHHHHHh
Q psy13776 209 ELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 209 ~lI~g~~gtGKTtLa~~~I~nq 230 (539)
+.|.|.+|+||||++ ..+...
T Consensus 3 I~i~G~~GsGKsTl~-~~L~~~ 23 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV-EKLSGA 23 (214)
T ss_dssp EEEEEEEEEEHHHHH-HHHHHH
T ss_pred EEEEcCCCCCHHHHH-HHHHHH
Confidence 678999999999998 555543
No 496
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=66.75 E-value=1.6 Score=39.69 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=18.9
Q ss_pred ccceeeeeccCCCCchHhHHHHHHH
Q psy13776 205 RGQRELIIGDRQTGKTALAIDTIIN 229 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa~~~I~n 229 (539)
+.=|++++|++|+|||+|+ ..+.+
T Consensus 29 ~~~ki~v~G~~~~GKSsli-~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLL-ISYTT 52 (204)
Confidence 3447899999999999997 55553
No 497
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=62.58 E-value=4.5 Score=44.27 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=17.2
Q ss_pred ccceeeeeccCCCCchHhH
Q psy13776 205 RGQRELIIGDRQTGKTALA 223 (539)
Q Consensus 205 rGQR~lI~g~~gtGKTtLa 223 (539)
.|...++||++|||||||+
T Consensus 240 ~g~~~lffGlSGtGKTTLs 258 (540)
T 2olr_A 240 KGDVAVFFGLSGTGKTTLS 258 (540)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEccCCCCHHHHh
Confidence 5678899999999999997
No 498
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=62.38 E-value=4.3 Score=37.43 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=17.7
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.++|.|.+|+|||||+ ..++..
T Consensus 8 ~i~i~G~sGsGKTTl~-~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL-KKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHH
T ss_pred EEEEEeCCCCCHHHHH-HHHHHh
Confidence 5679999999999997 556544
No 499
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=62.06 E-value=4.5 Score=40.36 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=18.6
Q ss_pred eeeeeccCCCCchHhHHHHHHHh
Q psy13776 208 RELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 208 R~lI~g~~gtGKTtLa~~~I~nq 230 (539)
.+++.||+|||||.++ ..|++.
T Consensus 106 ~~~l~GppgtGKt~~a-~ala~~ 127 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIA-EAIAHT 127 (267)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHhh
Confidence 5789999999999999 567764
No 500
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=61.49 E-value=1.6 Score=40.01 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.1
Q ss_pred ceeeeeccCCCCchHhHHHHHHHh
Q psy13776 207 QRELIIGDRQTGKTALAIDTIINQ 230 (539)
Q Consensus 207 QR~lI~g~~gtGKTtLa~~~I~nq 230 (539)
-+++++|.+|+|||||+ ..++++
T Consensus 30 ~~i~v~G~~~~GKSsli-n~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAI-NVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHH-HHHTTC
T ss_pred CEEEEEcCCCCCHHHHH-HHHhCC
Confidence 47899999999999997 666654
Done!