RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13776
(539 letters)
>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 520 bits (1343), Expect = 0.0
Identities = 191/336 (56%), Positives = 217/336 (64%), Gaps = 99/336 (29%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
L GIKA+D+++PIGRGQRELIIGDRQTGKTA+AIDTIINQK
Sbjct: 146 LQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK------------------ 187
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM 309
K + CIYVAIGQK STVAQ+V++L + GAM
Sbjct: 188 -----------------------------GKDVICIYVAIGQKASTVAQVVRKLEEHGAM 218
Query: 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369
YTI+V+ATASD APLQYLAPY+GCAMGE+F DNGK ALI+YDDLSKQAVAYRQ+SLLLR
Sbjct: 219 EYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLR 278
Query: 370 RPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
RPPGREAYPGDVFYLHSRLLER+AK+S+ GGGSLTALP+IETQAGDVSAYIPTNVISIT
Sbjct: 279 RPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQAGDVSAYIPTNVISIT 338
Query: 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRV 489
DGQIFLE++LF
Sbjct: 339 DGQIFLESDLFNA----------------------------------------------- 351
Query: 490 VDALGIRPAINVGLSVSRVGSAAQTRAMKQ-TGKIR 524
GIRPAINVG+SVSRVG AAQ +AMK+ G +R
Sbjct: 352 ----GIRPAINVGISVSRVGGAAQIKAMKKVAGTLR 383
Score = 227 bits (581), Expect = 6e-68
Identities = 78/94 (82%), Positives = 86/94 (91%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
AVAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLER+AK+S+ GGGSLTALP+IETQAGDV
Sbjct: 267 AVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQAGDV 326
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
SAYIPTNVISITDGQIFLE++LF R +IN G
Sbjct: 327 SAYIPTNVISITDGQIFLESDLFNAGIRPAINVG 360
Score = 151 bits (384), Expect = 6e-40
Identities = 64/127 (50%), Positives = 78/127 (61%), Gaps = 24/127 (18%)
Query: 155 QLIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGD 214
+LIIGDRQTGKTA+AIDTIINQK K + + V I GQ+ +
Sbjct: 165 ELIIGDRQTGKTAIAIDTIINQKGK-------------DVICI--YVAI--GQKASTVAQ 207
Query: 215 -----RQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSK 269
+ G A+ ++ + APLQYLAPY+GCAMGE+F DNGK ALI+YDDLSK
Sbjct: 208 VVRKLEEHG--AMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSK 265
Query: 270 QAVAYRQ 276
QAVAYRQ
Sbjct: 266 QAVAYRQ 272
Score = 110 bits (277), Expect = 1e-25
Identities = 36/53 (67%), Positives = 42/53 (79%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G+ALNLE DNVG V+ G+ IKEGD VKRTG I++VPVGE LLGRVV+ LG
Sbjct: 60 YGIALNLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLG 112
>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy
production and conversion].
Length = 504
Score = 466 bits (1202), Expect = e-161
Identities = 189/336 (56%), Positives = 215/336 (63%), Gaps = 99/336 (29%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
L GIKA+D+L+PIGRGQRELIIGDRQTGKTA+AIDTIINQK
Sbjct: 146 LQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQK------------------ 187
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM 309
+ CIYVAIGQKRSTVA +V+ L + GAM
Sbjct: 188 -----------------------------GSGVKCIYVAIGQKRSTVANVVRTLEEHGAM 218
Query: 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369
YTI+V+A+ASD+APLQYLAPY+GCAM E+FRDNGK LI+YDDLSK AVAYR++SLLLR
Sbjct: 219 DYTIVVAASASDSAPLQYLAPYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLR 278
Query: 370 RPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
RPPGREAYPGDVFYLHSRLLER+AK+S+ GGGS+TALP+IETQAGDVSAYIPTNVISIT
Sbjct: 279 RPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQAGDVSAYIPTNVISIT 338
Query: 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRV 489
DGQIFLET+LF
Sbjct: 339 DGQIFLETDLFNA----------------------------------------------- 351
Query: 490 VDALGIRPAINVGLSVSRVGSAAQTRAMKQ-TGKIR 524
GIRPAINVGLSVSRVGSAAQ +AMK+ G +R
Sbjct: 352 ----GIRPAINVGLSVSRVGSAAQIKAMKKVAGSLR 383
Score = 205 bits (524), Expect = 7e-60
Identities = 77/94 (81%), Positives = 86/94 (91%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
AVAYR++SLLLRRPPGREAYPGDVFYLHSRLLER+AK+S+ GGGS+TALP+IETQAGDV
Sbjct: 267 AVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQAGDV 326
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
SAYIPTNVISITDGQIFLET+LF R +IN G
Sbjct: 327 SAYIPTNVISITDGQIFLETDLFNAGIRPAINVG 360
Score = 100 bits (251), Expect = 2e-22
Identities = 46/82 (56%), Positives = 54/82 (65%), Gaps = 12/82 (14%)
Query: 425 VISITDGQI-------FLETELF-----YKGMALNLEPDNVGVVVFGNDRLIKEGDIVKR 472
VIS+ DG + EL KGMALNLE D+VG V+ G+ IKEGD VKR
Sbjct: 31 VISVGDGIARVSGLENVMAGELVEFPGGVKGMALNLEEDSVGAVILGDYSDIKEGDEVKR 90
Query: 473 TGAIVDVPVGEDLLGRVVDALG 494
TG I++VPVGE+LLGRVVDALG
Sbjct: 91 TGRILEVPVGEELLGRVVDALG 112
>gnl|CDD|238552 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta and
epsilon subunits with a stoichiometry of 3:3:1:1:1. The
alpha subunit of the F1 ATP synthase can bind
nucleotides, but is non-catalytic.
Length = 274
Score = 447 bits (1152), Expect = e-156
Identities = 191/320 (59%), Positives = 209/320 (65%), Gaps = 98/320 (30%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
L GIKA+D+++PIGRGQRELIIGDRQTGKTA+AIDTIINQK
Sbjct: 53 LQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG----------------- 95
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM 309
KK+YCIYVAIGQK STVAQ+VK L + GAM
Sbjct: 96 ------------------------------KKVYCIYVAIGQKASTVAQVVKTLEEHGAM 125
Query: 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369
YTI+V+ATASD APLQYLAPY+GCAMGE+F DNGKHALIIYDDLSKQAVAYRQMSLLLR
Sbjct: 126 EYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLLR 185
Query: 370 RPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
RPPGREAYPGDVFYLHSRLLER+AK+++ GGGSLTALP+IETQAGDVSAYIPTNVISIT
Sbjct: 186 RPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQAGDVSAYIPTNVISIT 245
Query: 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRV 489
DGQIFLET+LF K
Sbjct: 246 DGQIFLETDLFNK----------------------------------------------- 258
Query: 490 VDALGIRPAINVGLSVSRVG 509
GIRPAINVGLSVSRVG
Sbjct: 259 ----GIRPAINVGLSVSRVG 274
Score = 208 bits (531), Expect = 2e-63
Identities = 80/94 (85%), Positives = 87/94 (92%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AK+++ GGGSLTALP+IETQAGDV
Sbjct: 174 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQAGDV 233
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
SAYIPTNVISITDGQIFLET+LF K R +IN G
Sbjct: 234 SAYIPTNVISITDGQIFLETDLFNKGIRPAINVG 267
Score = 142 bits (359), Expect = 1e-38
Identities = 65/125 (52%), Positives = 77/125 (61%), Gaps = 20/125 (16%)
Query: 155 QLIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIG- 213
+LIIGDRQTGKTA+AIDTIINQK K + + V I GQ+ +
Sbjct: 72 ELIIGDRQTGKTAIAIDTIINQKGK-------------KVYCI--YVAI--GQKASTVAQ 114
Query: 214 --DRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
A+ ++ + APLQYLAPY+GCAMGE+F DNGKHALIIYDDLSKQA
Sbjct: 115 VVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQA 174
Query: 272 VAYRQ 276
VAYRQ
Sbjct: 175 VAYRQ 179
Score = 40.7 bits (96), Expect = 0.001
Identities = 17/19 (89%), Positives = 17/19 (89%)
Query: 476 IVDVPVGEDLLGRVVDALG 494
I DVPVGE LLGRVVDALG
Sbjct: 1 IADVPVGEALLGRVVDALG 19
>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha
subunit. The sequences of ATP synthase F1 alpha and
beta subunits are related and both contain a
nucleotide-binding site for ATP and ADP. They have a
common amino terminal domain but vary at the C-terminus.
The beta chain has catalytic activity, while the alpha
chain is a regulatory subunit. The alpha-subunit
contains a highly conserved adenine-specific
noncatalytic nucleotide-binding domain. The conserved
amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton
translocating ATP synthase F1, alpha subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), B subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 501
Score = 435 bits (1120), Expect = e-148
Identities = 192/336 (57%), Positives = 218/336 (64%), Gaps = 99/336 (29%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
L GIKA+D+++PIGRGQRELIIGDRQTGKTA+AIDTIINQK
Sbjct: 145 LQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDTIINQKD----------------- 187
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM 309
+YCIYVAIGQK STVAQ+V++L + GAM
Sbjct: 188 ------------------------------SDVYCIYVAIGQKASTVAQVVRKLEEHGAM 217
Query: 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369
YTI+V+ATASD+A LQYLAPY+GC MGE+FRDNGKHALIIYDDLSKQAVAYRQ+SLLLR
Sbjct: 218 AYTIVVAATASDSASLQYLAPYTGCTMGEYFRDNGKHALIIYDDLSKQAVAYRQISLLLR 277
Query: 370 RPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
RPPGREA+PGDVFYLHSRLLER+AK+++ GGGSLTALP+IETQAGDVSAYIPTNVISIT
Sbjct: 278 RPPGREAFPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTNVISIT 337
Query: 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRV 489
DGQIFLE++LF
Sbjct: 338 DGQIFLESDLFNS----------------------------------------------- 350
Query: 490 VDALGIRPAINVGLSVSRVGSAAQTRAMKQ-TGKIR 524
GIRPAINVGLSVSRVG AAQ +AMKQ G +R
Sbjct: 351 ----GIRPAINVGLSVSRVGGAAQIKAMKQVAGSLR 382
Score = 195 bits (498), Expect = 3e-56
Identities = 76/94 (80%), Positives = 86/94 (91%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
AVAYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER+AK+++ GGGSLTALP+IETQAGDV
Sbjct: 266 AVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAAKLNDEKGGGSLTALPIIETQAGDV 325
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
SAYIPTNVISITDGQIFLE++LF R +IN G
Sbjct: 326 SAYIPTNVISITDGQIFLESDLFNSGIRPAINVG 359
Score = 82.8 bits (205), Expect = 9e-17
Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 12/82 (14%)
Query: 425 VISITDG------------QIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKR 472
V+S+ DG +E E +G+ALNLE D+VG V+ G+ I+EG VKR
Sbjct: 30 VVSVGDGIARVYGLENVMSGELIEFEGGVQGIALNLEEDSVGAVIMGDYSDIREGSTVKR 89
Query: 473 TGAIVDVPVGEDLLGRVVDALG 494
TG I++VPVG+ LLGRVV+ALG
Sbjct: 90 TGRILEVPVGDGLLGRVVNALG 111
>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit.
Length = 485
Score = 411 bits (1059), Expect = e-139
Identities = 175/339 (51%), Positives = 203/339 (59%), Gaps = 99/339 (29%)
Query: 187 YNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSG 246
Y L G+ A+DS++PIGRGQRELIIGDRQTGKTA+A DTI+NQK
Sbjct: 122 YEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKG-------------- 167
Query: 247 CAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDS 306
+ + C+YVAIGQK S+VAQ+V L +
Sbjct: 168 ---------------------------------QNVICVYVAIGQKASSVAQVVTTLQER 194
Query: 307 GAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSL 366
GAM YTI+V+ TA A LQYLAPY+G A+ E+F G+H LIIYDDLSKQA AYRQMSL
Sbjct: 195 GAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSL 254
Query: 367 LLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVI 426
LLRRPPGREAYPGDVFYLHSRLLER+AK+S G GS+TALP++ETQAGDVSAYIPTNVI
Sbjct: 255 LLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVI 314
Query: 427 SITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLL 486
SITDGQIFL +LF G
Sbjct: 315 SITDGQIFLSADLFNAG------------------------------------------- 331
Query: 487 GRVVDALGIRPAINVGLSVSRVGSAAQTRAMKQT-GKIR 524
IRPAINVG+SVSRVGSAAQ +AMKQ GK++
Sbjct: 332 --------IRPAINVGISVSRVGSAAQIKAMKQVAGKLK 362
Score = 192 bits (491), Expect = 3e-55
Identities = 74/94 (78%), Positives = 81/94 (86%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A AYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AK+S G GS+TALP++ETQAGDV
Sbjct: 246 AQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDV 305
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
SAYIPTNVISITDGQIFL +LF R +IN G
Sbjct: 306 SAYIPTNVISITDGQIFLSADLFNAGIRPAINVG 339
Score = 114 bits (287), Expect = 4e-27
Identities = 57/128 (44%), Positives = 72/128 (56%), Gaps = 22/128 (17%)
Query: 154 GQ--LIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELI 211
GQ LIIGDRQTGKTA+A DTI+NQK G + V I GQ+
Sbjct: 141 GQRELIIGDRQTGKTAVATDTILNQK---------------GQNVICVYVAI--GQKASS 183
Query: 212 IGDRQTG---KTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLS 268
+ T + A+ ++ + + A LQYLAPY+G A+ E+F G+H LIIYDDLS
Sbjct: 184 VAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLS 243
Query: 269 KQAVAYRQ 276
KQA AYRQ
Sbjct: 244 KQAQAYRQ 251
Score = 80.8 bits (200), Expect = 3e-16
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 435 LETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
+E E G+ALNLE +NVGVV+ G+ +I+EG VK TG I +PV E LGRVV+AL
Sbjct: 32 VEFEDGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVVNALA 91
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 408 bits (1051), Expect = e-138
Identities = 163/336 (48%), Positives = 202/336 (60%), Gaps = 99/336 (29%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
L GIK VD+L+PIGRGQRELIIGDRQTGKTA+AID IINQK
Sbjct: 146 LQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAIINQKD----------------- 188
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM 309
+ C+YVAIGQK S VA++++ L + GA+
Sbjct: 189 ------------------------------SDVICVYVAIGQKASAVARVIETLREHGAL 218
Query: 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369
YT +V A ASD LQYLAP++GCA+ E+FRD G+ ALI+YDDLSK A AYR++SLLLR
Sbjct: 219 EYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLR 278
Query: 370 RPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
RPPGREAYPGD+FYLHSRLLER+AK+S GGGSLTALP+IET AG++SAYIPTN+ISIT
Sbjct: 279 RPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSLTALPIIETLAGELSAYIPTNLISIT 338
Query: 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRV 489
DGQI+L+++LF
Sbjct: 339 DGQIYLDSDLF------------------------------------------------- 349
Query: 490 VDALGIRPAINVGLSVSRVGSAAQTRAMKQ-TGKIR 524
A G RPA++VGLSVSRVG AQ A+++ +G++R
Sbjct: 350 --AAGQRPAVDVGLSVSRVGGKAQHPAIRKESGRLR 383
Score = 190 bits (485), Expect = 3e-54
Identities = 67/94 (71%), Positives = 83/94 (88%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A AYR++SLLLRRPPGREAYPGD+FYLHSRLLER+AK+S GGGSLTALP+IET AG++
Sbjct: 267 AAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSLTALPIIETLAGEL 326
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
SAYIPTN+ISITDGQI+L+++LF R +++ G
Sbjct: 327 SAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVG 360
Score = 75.7 bits (187), Expect = 1e-14
Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 13/85 (15%)
Query: 425 VISITDGQIF------------LETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKR 472
V S+ DG F L E +G A NLE + VG V+ + I G V+R
Sbjct: 31 VESVGDGIAFVSGLPDAALDELLRFEGGSRGFAFNLEEELVGAVLLDDTADILAGTEVRR 90
Query: 473 TGAIVDVPVGEDLLGRVVDALGIRP 497
TG +++VPVG+ LLGRV+D LG RP
Sbjct: 91 TGRVLEVPVGDGLLGRVIDPLG-RP 114
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha.
A small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F1 alpha subunit of this apparent
second ATP synthase.
Length = 497
Score = 295 bits (757), Expect = 4e-94
Identities = 145/336 (43%), Positives = 188/336 (55%), Gaps = 99/336 (29%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
L G+K +D+L+PIGRGQRELI+GDRQTGKTA+AIDTI+NQK
Sbjct: 146 LQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQKG----------------- 188
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM 309
+ + CIY AIGQ+ S VA++V L + GAM
Sbjct: 189 ------------------------------RNVLCIYCAIGQRASAVAKVVANLREHGAM 218
Query: 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369
YTI+V +D LQY+APY+ ++GE F + G+ LI+YDDL++ A AYR++SLLLR
Sbjct: 219 DYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLR 278
Query: 370 RPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
RPPGREA+PGD+FY+HSRLLERS ++E GGGSLTALP+IET+A ++SAYIPTN+ISIT
Sbjct: 279 RPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQNISAYIPTNLISIT 338
Query: 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRV 489
DGQI+L LF
Sbjct: 339 DGQIYLSPTLF------------------------------------------------- 349
Query: 490 VDALGIRPAINVGLSVSRVGSAAQTRAMKQ-TGKIR 524
LG+ PA++VG SVSRVG AQ A + G ++
Sbjct: 350 --ELGVLPAVDVGKSVSRVGGKAQLAAYRAVAGDLK 383
Score = 157 bits (398), Expect = 5e-42
Identities = 67/109 (61%), Positives = 85/109 (77%), Gaps = 2/109 (1%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A AYR++SLLLRRPPGREA+PGD+FY+HSRLLERS ++E GGGSLTALP+IET+A ++
Sbjct: 267 ARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPIIETEAQNI 326
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLIIGDRQTGKTALA 169
SAYIPTN+ISITDGQI+L LF +++ G+ + R GK LA
Sbjct: 327 SAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSV--SRVGGKAQLA 373
Score = 79.4 bits (196), Expect = 9e-16
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 14/122 (11%)
Query: 155 QLIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGD 214
+LI+GDRQTGKTA+AIDTI+NQ K R L Y + AV +V R
Sbjct: 165 ELILGDRQTGKTAIAIDTILNQ--KGRNVLCIYCAIGQRASAVAKVVANLR--------- 213
Query: 215 RQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAY 274
A+ ++ + LQY+APY+ ++GE F + G+ LI+YDDL++ A AY
Sbjct: 214 ---EHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAY 270
Query: 275 RQ 276
R+
Sbjct: 271 RE 272
Score = 69.4 bits (170), Expect = 1e-12
Identities = 31/55 (56%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRP 497
G+A N++ D VGVV+ G ++ GD V+RTG ++DVPVG+ LLGRVVD LG RP
Sbjct: 61 GIAFNVDEDEVGVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLG-RP 114
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 290 bits (742), Expect = 4e-91
Identities = 171/344 (49%), Positives = 211/344 (61%), Gaps = 92/344 (26%)
Query: 182 RRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYL 241
R + YNLL+ G KAVD+++PIGRGQRELI+GDRQTGKT++A+ TIINQ
Sbjct: 166 RSPVNYNLLT-GFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQ----------- 213
Query: 242 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVK 301
R N + LSK AV IYV+IGQ+ S VA+I +
Sbjct: 214 -----------VRINQQ-------ILSKNAVI----------SIYVSIGQRCSNVARIHR 245
Query: 302 RLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAY 361
L GA+ YT +++ATA++ A LQYLAPYSG MGE+F + G+H L +YDDLSKQAVAY
Sbjct: 246 LLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAY 305
Query: 362 RQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYI 421
RQ+SLLLRRPPGREAYPGDVFYLHSRLLER+A +S GGGS+TALP++ET + DV+AYI
Sbjct: 306 RQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSNDVTAYI 365
Query: 422 PTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPV 481
TNVISITDGQI+L+T+LF TG
Sbjct: 366 VTNVISITDGQIYLDTKLF--------------------------------TG------- 386
Query: 482 GEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAMKQ-TGKIR 524
G RPA+N+GLSVSRVGS+AQ AMK GK++
Sbjct: 387 ------------GQRPAVNIGLSVSRVGSSAQNVAMKAVAGKLK 418
Score = 144 bits (364), Expect = 4e-37
Identities = 68/95 (71%), Positives = 82/95 (86%)
Query: 60 KAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGD 119
+AVAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLER+A +S GGGS+TALP++ET + D
Sbjct: 301 QAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSND 360
Query: 120 VSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
V+AYI TNVISITDGQI+L+T+LF R ++N G
Sbjct: 361 VTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIG 395
Score = 42.7 bits (100), Expect = 4e-04
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 432 QIFLETELFYKGMALNLEPDN-VGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVV 490
I + F G+ NLE D +G+++ N ++ G V TG ++ +PVG +LG+VV
Sbjct: 69 MIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVV 128
Query: 491 DALGIRPAINVGLSVSRVGSAAQTRAMKQTG 521
+ LG + + + + QT G
Sbjct: 129 NPLGHEVPVGLLTRSRALLESEQTLGKVDAG 159
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 263 bits (676), Expect = 9e-86
Identities = 94/251 (37%), Positives = 129/251 (51%), Gaps = 51/251 (20%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GI+A+D L+PIG+GQR I G TGKT L N K
Sbjct: 2 GIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAK--------------------- 40
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
+ +YV IG++ VA+ ++ L GA+ T
Sbjct: 41 ---------------------------ADVVEVYVLIGERGREVAEFIEELLGEGALKRT 73
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
++V+AT+ + +YLAPY+ + E+FRD GK L++ D L++ A A R++SLLL PP
Sbjct: 74 VVVAATSDEPPAERYLAPYTALTIAEYFRDQGKDVLLLLDSLTRFARALREISLLLGEPP 133
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
GRE YPG +F +RLLER+ K GGGS+TALP + GD++ IP N ISITDGQ
Sbjct: 134 GREGYPGSLFSDLARLLERAGK---VEGGGSITALPTVLVPGGDITDPIPDNTISITDGQ 190
Query: 433 IFLETELFYKG 443
I L EL +G
Sbjct: 191 IVLSRELAERG 201
Score = 126 bits (319), Expect = 1e-33
Identities = 47/92 (51%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R++SLLL PPGRE YPG +F +RLLER+ K GGGS+TALP + GD+
Sbjct: 119 ARALREISLLLGEPPGREGYPGSLFSDLARLLERAGK---VEGGGSITALPTVLVPGGDI 175
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSIN 152
+ IP N ISITDGQI L EL + +I+
Sbjct: 176 TDPIPDNTISITDGQIVLSRELAERGIYPAID 207
>gnl|CDD|235951 PRK07165, PRK07165, F0F1 ATP synthase subunit alpha; Validated.
Length = 507
Score = 244 bits (625), Expect = 2e-74
Identities = 118/346 (34%), Positives = 167/346 (48%), Gaps = 113/346 (32%)
Query: 184 LLKYNLLS----AGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQ 239
L+ L+ GI A+D L+PIG+GQRELIIGDRQTGKT +A++TIINQK
Sbjct: 117 LMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIALNTIINQK-------- 168
Query: 240 YLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQI 299
N K CIYVAIGQKR +++I
Sbjct: 169 --------------NTNVK-------------------------CIYVAIGQKRENLSRI 189
Query: 300 VKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGE---FFRDNGKHALIIYDDLSK 356
+ L + A+ TII+ A S + QYLAPY A E + D LI++DDL+K
Sbjct: 190 YETLKEHDALKNTIIIDA-PSTSPYEQYLAPYVAMAHAENISYNDD----VLIVFDDLTK 244
Query: 357 QAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGD 416
A YR+++LL +P G+EA+PGD+F+ HS+LLER+ K ++TALP+++T D
Sbjct: 245 HANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFK---NRKTITALPILQTVDND 301
Query: 417 VSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAI 476
+++ I +N+ISITDGQI ++LF
Sbjct: 302 ITSLISSNIISITDGQIVTSSDLF------------------------------------ 325
Query: 477 VDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAMKQTGK 522
A G PAI++ LSVSR GS+ Q++ + +
Sbjct: 326 ---------------ASGKLPAIDIDLSVSRTGSSVQSKTITKVAG 356
Score = 105 bits (263), Expect = 5e-24
Identities = 37/80 (46%), Positives = 59/80 (73%), Gaps = 3/80 (3%)
Query: 64 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAY 123
YR+++LL +P G+EA+PGD+F+ HS+LLER+ K ++TALP+++T D+++
Sbjct: 249 YREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFK---NRKTITALPILQTVDNDITSL 305
Query: 124 IPTNVISITDGQIFLETELF 143
I +N+ISITDGQI ++LF
Sbjct: 306 ISSNIISITDGQIVTSSDLF 325
Score = 77.7 bits (192), Expect = 4e-15
Identities = 48/126 (38%), Positives = 65/126 (51%), Gaps = 24/126 (19%)
Query: 155 QLIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGD 214
+LIIGDRQTGKT +A++TIINQK +K + V IG+ +RE +
Sbjct: 146 ELIIGDRQTGKTHIALNTIINQKNT-------------NVKCI--YVAIGQ-KRENLSRI 189
Query: 215 RQTGKTALAID-TIINQKSIYAAPLQYLAPYSGCAMGE---FFRDNGKHALIIYDDLSKQ 270
+T K A+ TII + QYLAPY A E + D LI++DDL+K
Sbjct: 190 YETLKEHDALKNTIIIDAPSTSPYEQYLAPYVAMAHAENISYNDD----VLIVFDDLTKH 245
Query: 271 AVAYRQ 276
A YR+
Sbjct: 246 ANIYRE 251
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 92.0 bits (229), Expect = 6e-20
Identities = 67/250 (26%), Positives = 101/250 (40%), Gaps = 53/250 (21%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
L G++A+D L+ G GQR I GK+ L +
Sbjct: 129 LPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTL--------------------------L 162
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM 309
G R G A + + IG++ V + ++
Sbjct: 163 GMIAR--GASADV---------------------NVIALIGERGREVREFIEHHLGEEGR 199
Query: 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369
+++V +T+ + + A Y+ A+ E+FRD GK L++ D L++ A A R++ L
Sbjct: 200 KRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAG 259
Query: 370 RPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
PP R YP VF RLLER A E GS+TAL + + D++ I V SI
Sbjct: 260 EPPARGGYPPSVFSSLPRLLER-AGNGEK---GSITALYTVLVEGDDMNDPIADEVRSIL 315
Query: 430 DGQIFLETEL 439
DG I L L
Sbjct: 316 DGHIVLSRAL 325
Score = 49.2 bits (118), Expect = 3e-06
Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R++ L PP R YP VF RLLER A E GS+TAL + + D+
Sbjct: 248 ARALREIGLAAGEPPARGGYPPSVFSSLPRLLER-AGNGEK---GSITALYTVLVEGDDM 303
Query: 121 SAYIPTNVISITDGQIFLETEL 142
+ I V SI DG I L L
Sbjct: 304 NDPIADEVRSILDGHIVLSRAL 325
Score = 36.5 bits (85), Expect = 0.031
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 450 PDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRP 497
D + G I G V TG + + VGE LLGRV+D G RP
Sbjct: 49 GDEALLSPLGELHGISPGSEVIPTGRPLSIRVGEALLGRVLDGFG-RP 95
>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins [Energy metabolism, ATP-proton
motive force interconversion].
Length = 440
Score = 90.1 bits (224), Expect = 3e-19
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 4/132 (3%)
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 371
+++V AT+ + L+ Y A+ E+FRD GK L++ D +++ A+A R++ L P
Sbjct: 220 SVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEP 279
Query: 372 PGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDG 431
P + Y VF RLLER+ A G GS+TA + + D++ I +V I DG
Sbjct: 280 PATKGYTPSVFSTLPRLLERAG----ASGKGSITAFYTVLVEGDDMNEPIADSVRGILDG 335
Query: 432 QIFLETELFYKG 443
I L L +G
Sbjct: 336 HIVLSRALAQRG 347
Score = 52.8 bits (127), Expect = 3e-07
Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A+A R++ L PP + Y VF RLLER+ A G GS+TA + + D+
Sbjct: 266 AMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAG----ASGKGSITAFYTVLVEGDDM 321
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRG---SINCGQLIIGDRQTGKTALAIDTIINQK 177
+ I +V I DG I L L RG +I+ I + L + +
Sbjct: 322 NEPIADSVRGILDGHIVLSRALA---QRGHYPAIDVLASI--------SRLMTAIVSEEH 370
Query: 178 RKKRRRLLKYNLLSAGIKAVDSLVPIGRGQR 208
R+ R K+ L + K + L+ IG QR
Sbjct: 371 RRAAR---KFRELLSKYKDNEDLIRIGAYQR 398
Score = 42.7 bits (101), Expect = 4e-04
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 38/125 (30%)
Query: 190 LSAGIKAVDSLVPIGRGQRELI----------------------------IGDR------ 215
LS G++++D L+ +G+GQR I IG+R
Sbjct: 147 LSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVRE 206
Query: 216 ----QTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
G+ L ++ S + L+ Y A+ E+FRD GK L++ D +++ A
Sbjct: 207 FIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFA 266
Query: 272 VAYRQ 276
+A R+
Sbjct: 267 MAQRE 271
Score = 40.0 bits (94), Expect = 0.002
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINV 501
+ + V ++ + ++ G V TG + + VG+ LLGRV+D LG +P
Sbjct: 60 VAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGLLGRVLDGLG-KPIDGK 118
Query: 502 GLSVSRVGSAAQTRA 516
G + V + A
Sbjct: 119 GKFLDNVETEGLITA 133
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 81.0 bits (200), Expect = 5e-18
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 26/162 (16%)
Query: 279 KKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGE 338
K +YV I ++ + + + + GA+ IIV ATA D A + L + E
Sbjct: 25 TKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL------SKAE 78
Query: 339 FFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEA 398
R+ G LII D+L++ A R++ RE YPG++ LLER+ K
Sbjct: 79 RLRERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERARK---- 125
Query: 399 HGGGSLTALPVIETQAGDVSAY----IPTNVISITDGQIFLE 436
G +T + ++ +GD N+ I D I L
Sbjct: 126 ---GGVTVIFTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLS 164
Score = 41.3 bits (97), Expect = 3e-04
Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 28/163 (17%)
Query: 156 LIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDR 215
L+ G +GKT LA+ +N K +V + + + +R
Sbjct: 3 LVFGPTGSGKTTLALQLALNIATKG-----------------GKVVYVDIEEEIEELTER 45
Query: 216 QTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM-GEFFRDNGKHALIIYDDLSKQAVAY 274
G++ I + E R+ G LII D+L++ A
Sbjct: 46 LIGESL----KGALDNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRAL 101
Query: 275 RQDEKK----KLYCIY--VAIGQKRSTVAQIVKRLTDSGAMGY 311
R+ + + + +K ++
Sbjct: 102 REIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGDP 144
Score = 40.2 bits (94), Expect = 8e-04
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 43 AAEISSILEERILGSAPKAVAYRQMSLLLRR-PPGREAYPGDVFYLHSRLLERSAKMSEA 101
AA + S E + +++ L+R RE YPG++ LLER+ K
Sbjct: 70 AARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK---- 125
Query: 102 HGGGSLTALPVIETQAGDVSAY----IPTNVISITDGQIFLE 139
G +T + ++ +GD N+ I D I L
Sbjct: 126 ---GGVTVIFTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLS 164
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 84.2 bits (209), Expect = 2e-17
Identities = 56/216 (25%), Positives = 86/216 (39%), Gaps = 56/216 (25%)
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 371
+++V AT+ ++A ++ A ++ + E+FRD GK L+I D L++ A+A R++ L P
Sbjct: 220 SVVVVATSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEP 279
Query: 372 PGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDG 431
P + YP VF RLLER A + GS+TA + + D++ I V SI DG
Sbjct: 280 PATKGYPPSVFSELPRLLER-AGNGDK---GSITAFYTVLVEGDDMNDPIADEVRSILDG 335
Query: 432 QIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVD 491
I L L
Sbjct: 336 HIVLSRALA--------------------------------------------------- 344
Query: 492 ALGIRPAINVGLSVSRVGSAAQTRAM-KQTGKIRSW 526
G PAI+V S+SRV + K ++R
Sbjct: 345 EAGHYPAIDVLASISRVMPQIVSEEHRKAARRLRQL 380
Score = 44.1 bits (105), Expect = 1e-04
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A+A R++ L PP + YP VF RLLER A + GS+TA + + D+
Sbjct: 266 AMAQREIGLAAGEPPATKGYPPSVFSELPRLLER-AGNGDK---GSITAFYTVLVEGDDM 321
Query: 121 SAYIPTNVISITDGQIFLETEL 142
+ I V SI DG I L L
Sbjct: 322 NDPIADEVRSILDGHIVLSRAL 343
Score = 42.6 bits (101), Expect = 4e-04
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 38/124 (30%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTAL--------AIDTII------------- 228
L G++A+D L+ G+GQR I GK+ L D +
Sbjct: 147 LDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVRE 206
Query: 229 ----------NQKS-IYAAP------LQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
++S + A ++ A ++ + E+FRD GK L+I D L++ A
Sbjct: 207 FIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMDSLTRFA 266
Query: 272 VAYR 275
+A R
Sbjct: 267 MAQR 270
Score = 41.4 bits (98), Expect = 0.001
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 455 VVVFGNDRL----------IKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
VV F +R+ + G V TG + VPVG+ LLGRV+D LG
Sbjct: 64 VVGFNEERVLLMPFEPVEGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLG 113
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 80.4 bits (199), Expect = 2e-16
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 371
+++V AT+ ++ L+ A Y+ A+ E+FRD GK L++ D L++ A+A R++ L P
Sbjct: 126 SVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGLAAGEP 185
Query: 372 PGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDG 431
P + YP VF L RLLER+ + GS+TA + + D++ I V SI DG
Sbjct: 186 PTTKGYPPSVFALLPRLLERAGNSDK----GSITAFYTVLVEGDDLNEPIADAVRSILDG 241
Query: 432 QIFLETELFYKG 443
I L L G
Sbjct: 242 HIVLSRALAAAG 253
Score = 45.7 bits (109), Expect = 4e-05
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A+A R++ L PP + YP VF L RLLER+ + GS+TA + + D+
Sbjct: 172 AMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDK----GSITAFYTVLVEGDDL 227
Query: 121 SAYIPTNVISITDGQIFLETEL 142
+ I V SI DG I L L
Sbjct: 228 NEPIADAVRSILDGHIVLSRAL 249
Score = 40.7 bits (96), Expect = 0.001
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 60/178 (33%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALA-------------------------- 223
L G++A+D L+ +G+GQR I GK+ L
Sbjct: 53 LPTGVRAIDGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVRE 112
Query: 224 -IDTIIN----QKSIY-------AAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
I+ + ++S+ + L+ A Y+ A+ E+FRD GK L++ D L++ A
Sbjct: 113 FIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFA 172
Query: 272 VAYRQDEKKKLYCIYVAIGQKRST------VAQIVKRLTDSGAMG--------YTIIV 315
+A R+ I +A G+ +T V ++ RL + YT++V
Sbjct: 173 MAQRE--------IGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDKGSITAFYTVLV 222
Score = 29.9 bits (68), Expect = 2.9
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 477 VDVPVGEDLLGRVVDALG 494
+ VPVG+ LLGRV+DA G
Sbjct: 2 LSVPVGDALLGRVLDAFG 19
>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic)
subunit B. These ATPases couple ATP hydrolysis to the
build up of a H+ gradient, but V-type ATPases do not
catalyze the reverse reaction. The Vacuolar (V-type)
ATPase is found in the membranes of vacuoles, the golgi
apparatus and in other coated vesicles in eukaryotes.
Archaea have a protein which is similar in sequence to
V-ATPases, but functions like an F-ATPase (called
A-ATPase). A similar protein is also found in a few
bacteria. This subfamily consists of the non-catalytic
beta subunit.
Length = 276
Score = 78.1 bits (193), Expect = 4e-16
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 7/195 (3%)
Query: 252 FFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGY 311
F +G + +++QA ++E + ++ A+G ++GA+
Sbjct: 74 IFSGSGLPHNELAAQIARQAGVVGEEENFAV--VFAAMGITMEDARFFKDDFEETGALER 131
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRR 370
++ A+D + + P E+ + GKH L+I D++ A A R++S
Sbjct: 132 VVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISAAREE 191
Query: 371 PPGREAYPGDVFYLHSRLLERSAKMSEAHG-GGSLTALPVIETQAGDVSAYIPTNVISIT 429
PGR YPG Y+++ L + G GS+T +P++ D++ IP IT
Sbjct: 192 VPGRRGYPG---YMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYIT 248
Query: 430 DGQIFLETELFYKGM 444
+GQI L+ +L +G+
Sbjct: 249 EGQIVLDRQLHNRGI 263
Score = 51.1 bits (123), Expect = 5e-07
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHG-GGSLTALPVIETQAGD 119
A A R++S PGR YPG Y+++ L + G GS+T +P++ D
Sbjct: 179 AEALREISAAREEVPGRRGYPG---YMYTDLATIYERAGRVEGRNGSITQIPILTMPNDD 235
Query: 120 VSAYIPTNVISITDGQIFLETELFYK 145
++ IP IT+GQI L+ +L +
Sbjct: 236 ITHPIPDLTGYITEGQIVLDRQLHNR 261
Score = 28.4 bits (64), Expect = 9.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 479 VPVGEDLLGRVVDALG 494
VPV ED+LGR+ + G
Sbjct: 4 VPVSEDMLGRIFNGSG 19
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 79.7 bits (197), Expect = 7e-16
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 309 MGYTIIVSATASDAAPL-QYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLL 367
+ +++V AT SD +PL + A Y+ A+ E+FRD GK L++ D +++ A+A R++ L
Sbjct: 194 LKRSVVVVAT-SDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLA 252
Query: 368 LRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVIS 427
PP Y VF RLLER+ +E G GS+T + + D + + V
Sbjct: 253 AGEPPVARGYTPSVFSELPRLLERAGPGAE--GKGSITGIFTVLVDGDDHNEPVADAVRG 310
Query: 428 ITDGQIFLETELFYKG 443
I DG I L+ + +G
Sbjct: 311 ILDGHIVLDRAIAERG 326
Score = 41.9 bits (99), Expect = 6e-04
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A+A R++ L PP Y VF RLLER+ +E G GS+T + + D
Sbjct: 243 AMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAE--GKGSITGIFTVLVDGDDH 300
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRG 149
+ + V I DG I L+ + +RG
Sbjct: 301 NEPVADAVRGILDGHIVLDRAIA---ERG 326
Score = 38.1 bits (89), Expect = 0.012
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 38/122 (31%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTAL--------AIDTII---------------- 228
G++ +D+ +P+ RGQR I GK+ L D ++
Sbjct: 127 GVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGREVREFLE 186
Query: 229 -------NQKSIY-------AAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAY 274
++S+ + ++ A Y+ A+ E+FRD GK L++ D +++ A+A
Sbjct: 187 DDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQ 246
Query: 275 RQ 276
R+
Sbjct: 247 RE 248
Score = 33.4 bits (77), Expect = 0.28
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 448 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
D V ++ F + G V + V LGRV++ALG
Sbjct: 43 FNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSWLGRVINALG 89
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 78.0 bits (192), Expect = 3e-15
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 289 IGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHAL 348
IG++ V + ++ M ++IV +T+ ++ L+ A Y G A+ E+FRD GK +
Sbjct: 199 IGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVV 258
Query: 349 IIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALP 408
++ D +++ A A R++ L PP R Y VF +LLERS A G++TA
Sbjct: 259 LMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSG----ASDKGTITAFY 314
Query: 409 VIETQAGDVSAYIPTNVISITDGQIFLETEL 439
+ D++ + V SI DG I L L
Sbjct: 315 TVLVAGDDMNEPVADEVKSILDGHIVLSNAL 345
Score = 44.1 bits (104), Expect = 1e-04
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R++ L PP R Y VF +LLERS A G++TA + D+
Sbjct: 268 ARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSG----ASDKGTITAFYTVLVAGDDM 323
Query: 121 SAYIPTNVISITDGQIFLETEL 142
+ + V SI DG I L L
Sbjct: 324 NEPVADEVKSILDGHIVLSNAL 345
Score = 41.4 bits (97), Expect = 0.001
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 204 GRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALII 263
GR RE I GD G+ + I+ S ++ L+ A Y G A+ E+FRD GK +++
Sbjct: 203 GREVREFIEGD--LGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLM 260
Query: 264 YDDLSKQAVAYRQ 276
D +++ A A R+
Sbjct: 261 MDSVTRFARALRE 273
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 413
Score = 77.4 bits (191), Expect = 3e-15
Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 5/145 (3%)
Query: 299 IVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 358
I K L + G + +++V AT+ A ++ A ++ A+ E+FRD GK L++ D +++ A
Sbjct: 182 IEKDLGEEG-LKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTRFA 240
Query: 359 VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVS 418
+A R++ L + PP Y VF L +LLERS GS+T + D++
Sbjct: 241 MAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN----SQKGSITGFYTVLVDGDDMN 296
Query: 419 AYIPTNVISITDGQIFLETELFYKG 443
I V I DG I L EL K
Sbjct: 297 EPIADAVRGILDGHIVLSRELAAKN 321
Score = 45.8 bits (109), Expect = 3e-05
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A+A R++ L + PP Y VF L +LLERS GS+T + D+
Sbjct: 240 AMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN----SQKGSITGFYTVLVDGDDM 295
Query: 121 SAYIPTNVISITDGQIFLETEL 142
+ I V I DG I L EL
Sbjct: 296 NEPIADAVRGILDGHIVLSREL 317
Score = 43.5 bits (103), Expect = 2e-04
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 40/135 (29%)
Query: 180 KRRRLLKYNLLSAGIKAVDSLVPIGRGQRELI---------------------------- 211
KR R+ + L GIKA+D L+ IG+GQR I
Sbjct: 113 KRPRI--RDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIAL 170
Query: 212 IGDR----------QTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHAL 261
IG+R G+ L ++ S A ++ A ++ A+ E+FRD GK L
Sbjct: 171 IGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVL 230
Query: 262 IIYDDLSKQAVAYRQ 276
++ D +++ A+A R+
Sbjct: 231 LMMDSVTRFAMAQRE 245
Score = 36.9 bits (86), Expect = 0.024
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 464 IKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
I G +V TG + + VG+ LLGRV+D LG
Sbjct: 57 IGPGSLVIATGRPLAIKVGKGLLGRVLDGLG 87
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 76.0 bits (187), Expect = 1e-14
Identities = 69/259 (26%), Positives = 105/259 (40%), Gaps = 54/259 (20%)
Query: 181 RRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQY 240
RR+++ L G++ VD L+ +G GQR I GK+ L
Sbjct: 139 SRRMVEAPL-PTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTL------------------ 179
Query: 241 LAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIV 300
MG F R +I IG++ V + +
Sbjct: 180 --------MGMFARGTQCDVNVI-----------------------ALIGERGREVREFI 208
Query: 301 KRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVA 360
+ + M +++V AT+ ++ + A Y A+ E+FRD G L++ D L++ A A
Sbjct: 209 ELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFARA 268
Query: 361 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAY 420
R++ L PP R +P VF RLLER A M E GS+TAL + + S
Sbjct: 269 QREIGLAAGEPPARRGFPPSVFAELPRLLER-AGMGET---GSITALYTVLAEDESGSDP 324
Query: 421 IPTNVISITDGQIFLETEL 439
I V I DG + L E+
Sbjct: 325 IAEEVRGILDGHMILSREI 343
Score = 40.1 bits (94), Expect = 0.003
Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R++ L PP R +P VF RLLER A M E GS+TAL + +
Sbjct: 266 ARAQREIGLAAGEPPARRGFPPSVFAELPRLLER-AGMGET---GSITALYTVLAEDESG 321
Query: 121 SAYIPTNVISITDGQIFLETEL 142
S I V I DG + L E+
Sbjct: 322 SDPIAEEVRGILDGHMILSREI 343
Score = 29.7 bits (67), Expect = 4.7
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 479 VPVGEDLLGRVVDALGIRPA 498
VPVG LLGRV+D LG P
Sbjct: 98 VPVGPALLGRVIDGLG-EPI 116
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 74.7 bits (184), Expect = 2e-14
Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 371
T+IV AT+ D+ ++ + ++ E+F++ G L I D +++ A+A R++ L L P
Sbjct: 213 TVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEP 272
Query: 372 PGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDG 431
P + YP V L +L+ER+ K G GS+TA + + D+S I SI DG
Sbjct: 273 PTSKGYPPSVLSLLPQLMERAGK---EEGKGSITAFFTVLVEGDDMSDPIADQSRSILDG 329
Query: 432 QIFLETEL 439
I L EL
Sbjct: 330 HIVLSREL 337
Score = 45.8 bits (109), Expect = 4e-05
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A+A R++ L L PP + YP V L +L+ER+ K G GS+TA + + D+
Sbjct: 259 AMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGK---EEGKGSITAFFTVLVEGDDM 315
Query: 121 SAYIPTNVISITDGQIFLETEL 142
S I SI DG I L EL
Sbjct: 316 SDPIADQSRSILDGHIVLSREL 337
Score = 39.3 bits (92), Expect = 0.005
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRP 497
GM + +E + G+ F K GD V + +++PVG +LLGRVVD LG RP
Sbjct: 56 GMVVVIEKEQFGISPFSFIEGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLG-RP 109
Score = 30.0 bits (68), Expect = 3.8
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 39/124 (31%)
Query: 191 SAGIKAVDSLVPIGRGQRELIIGDRQTGKTAL---------------AI----------- 224
S G+K++D L+ G+GQ+ I GK+ L A+
Sbjct: 142 SVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEF 201
Query: 225 ----------DTIINQKSIYAAPL--QYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 272
+T+I + +PL +Y A + ++ E+F++ G L I D +++ A+
Sbjct: 202 IEKNLGGDLENTVIVVATSDDSPLMRKYGA-FCAMSVAEYFKNQGLDVLFIMDSVTRFAM 260
Query: 273 AYRQ 276
A R+
Sbjct: 261 AQRE 264
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 73.2 bits (180), Expect = 8e-14
Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 8/157 (5%)
Query: 289 IGQKRSTVAQIVKRLTDSGAMGY--TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKH 346
IG++ V + ++R D G G +I+V AT+ A ++ Y+ A+ E+FRD G +
Sbjct: 192 IGERGREVREFIER--DLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLN 249
Query: 347 ALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTA 406
+++ D +++ A+A R++ L + PP + Y VF + +LLER+ + GS+TA
Sbjct: 250 VMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTG----TNASGSITA 305
Query: 407 LPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 443
+ D++ I V I DG L+ +L KG
Sbjct: 306 FYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKG 342
Score = 41.6 bits (98), Expect = 8e-04
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A+A R++ L + PP + Y VF + +LLER+ + GS+TA + D+
Sbjct: 261 AMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTG----TNASGSITAFYTVLVDGDDM 316
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSIN 152
+ I V I DG L+ +L K +IN
Sbjct: 317 NEPIADTVRGILDGHFVLDRQLANKGQYPAIN 348
Score = 33.2 bits (76), Expect = 0.37
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 464 IKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
I G +V+ TG ++V VG L+G+V+DALG
Sbjct: 78 IAPGCLVEATGKPLEVKVGSGLIGQVLDALG 108
>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy
production and conversion].
Length = 463
Score = 72.7 bits (179), Expect = 1e-13
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 13/186 (6%)
Query: 285 IYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-DN 343
++ A+G + ++GA+ ++ A D A + + P + E+ +
Sbjct: 182 VFAAMGITHEEALFFMDEFEETGALDRAVLFLNLADDPAVERIITPRMALTVAEYLAFEK 241
Query: 344 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHG-GG 402
H L+I D++ A R++S PGR YPG Y+++ L + G G
Sbjct: 242 DMHVLVILTDMTNYCEALREISAAREEVPGRRGYPG---YMYTDLATIYERAGRIRGRKG 298
Query: 403 SLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGN-D 461
S+T +P++ D++ IP IT+GQI L +L KG + P + V +
Sbjct: 299 SITQIPILTMPGDDITHPIPDLTGYITEGQIVLSRDLHRKG----IYP---PINVLPSLS 351
Query: 462 RLIKEG 467
RL+K+G
Sbjct: 352 RLMKDG 357
Score = 48.9 bits (117), Expect = 4e-06
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 63 AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHG-GGSLTALPVIETQAGDVS 121
A R++S PGR YPG Y+++ L + G GS+T +P++ D++
Sbjct: 258 ALREISAAREEVPGRRGYPG---YMYTDLATIYERAGRIRGRKGSITQIPILTMPGDDIT 314
Query: 122 AYIPTNVISITDGQIFLETELFYK 145
IP IT+GQI L +L K
Sbjct: 315 HPIPDLTGYITEGQIVLSRDLHRK 338
Score = 37.3 bits (87), Expect = 0.018
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 442 KGMALNLEPDNVGVVVFGNDR-LIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
+G L + D V VF L +G V+ TG + +PV EDLLGR+ + G
Sbjct: 43 RGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPVSEDLLGRIFNGSG 96
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated.
Length = 440
Score = 71.8 bits (176), Expect = 2e-13
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
Query: 289 IGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYL-APYSGCAMGEFFRDNGKHA 347
IG++ V + ++++ A T++V AT SD L+ L + + E+FRD GK
Sbjct: 197 IGERGREVREFLEQVLTPEARARTVVVVAT-SDRPALERLKGLSTATTIAEYFRDRGKKV 255
Query: 348 LIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTAL 407
L++ D L++ A A R++ L PP ++P VF RLLER+ GS+TA
Sbjct: 256 LLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDR----GSITAF 311
Query: 408 PVIETQAGDVSAYIPTNVISITDGQIFLETEL 439
+ + D++ + V S+ DG I L L
Sbjct: 312 YTVLVEGDDMNEPVADEVRSLLDGHIVLSRRL 343
Score = 39.0 bits (91), Expect = 0.005
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R++ L PP ++P VF RLLER+ GS+TA + + D+
Sbjct: 266 ARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDR----GSITAFYTVLVEGDDM 321
Query: 121 SAYIPTNVISITDGQIFLETEL 142
+ + V S+ DG I L L
Sbjct: 322 NEPVADEVRSLLDGHIVLSRRL 343
Score = 34.0 bits (78), Expect = 0.18
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 38/125 (30%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTAL--------AIDTII------------- 228
L+ GI+A+D ++ G GQR I GK+ L A D ++
Sbjct: 147 LTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGERGREVRE 206
Query: 229 ----------NQKSIYAA------PLQYL-APYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
+++ L+ L + + E+FRD GK L++ D L++ A
Sbjct: 207 FLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYA 266
Query: 272 VAYRQ 276
A R+
Sbjct: 267 RAARE 271
Score = 31.7 bits (72), Expect = 1.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 467 GDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G V G + V VG DL GR++D LG
Sbjct: 87 GQWVTPLGHMHQVQVGADLAGRILDGLG 114
>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated.
Length = 428
Score = 70.8 bits (174), Expect = 5e-13
Identities = 66/256 (25%), Positives = 103/256 (40%), Gaps = 57/256 (22%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
L G++A+D L+ G GQR I GKT+L M
Sbjct: 135 LITGVRAIDGLLTCGVGQRMGIFASAGCGKTSL--------------------------M 168
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVA--IGQKRSTVAQIVKRLTDSG 307
+ LI + + A D ++V IG++ V + V+ L S
Sbjct: 169 ---------NMLI------EHSEA---D-------VFVIGLIGERGREVTEFVESLRASS 203
Query: 308 AMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLL 367
++V AT+ ++ + A + E+FRD GK ++ D +++ A A R ++L
Sbjct: 204 RREKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALA 263
Query: 368 LRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVIS 427
P R YP VF RLLER GS+TA + ++ + I + S
Sbjct: 264 AGELPARRGYPASVFDSLPRLLERPGATLA----GSITAFYTVLLESEEEPDPIGDEIRS 319
Query: 428 ITDGQIFLETELFYKG 443
I DG I+L +L KG
Sbjct: 320 ILDGHIYLSRKLAAKG 335
Score = 40.4 bits (95), Expect = 0.002
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R ++L P R YP VF RLLER GS+TA + ++ +
Sbjct: 254 ARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATLA----GSITAFYTVLLESEEE 309
Query: 121 SAYIPTNVISITDGQIFLETEL 142
I + SI DG I+L +L
Sbjct: 310 PDPIGDEIRSILDGHIYLSRKL 331
Score = 29.6 bits (67), Expect = 4.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 469 IVKRTGAIVDVPVGEDLLGRVVDALG 494
++K TG + V VGE LLG V+D G
Sbjct: 72 VLKPTGKPLSVWVGEALLGAVLDPTG 97
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 71.0 bits (174), Expect = 5e-13
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 6/153 (3%)
Query: 289 IGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYL--APYSGCAMGEFFRDNGKH 346
IG++ V ++ + + +++++A A D +PL + A Y+ + E FRD G+H
Sbjct: 209 IGERGREVKDFIENILGAEGRARSVVIAAPA-DVSPLLRMQGAAYA-TRIAEDFRDRGQH 266
Query: 347 ALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTA 406
L+I D L++ A+A R+++L + PP + YP VF L+ER+ + GGGS+TA
Sbjct: 267 VLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAG--NGISGGGSITA 324
Query: 407 LPVIETQAGDVSAYIPTNVISITDGQIFLETEL 439
+ T+ D I + +I DG I L L
Sbjct: 325 FYTVLTEGDDQQDPIADSARAILDGHIVLSRRL 357
Score = 44.0 bits (104), Expect = 1e-04
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A+A R+++L + PP + YP VF L+ER+ + GGGS+TA + T+ D
Sbjct: 278 AMAQREIALAIGEPPATKGYPPSVFAKLPALVERAG--NGISGGGSITAFYTVLTEGDDQ 335
Query: 121 SAYIPTNVISITDGQIFLETEL 142
I + +I DG I L L
Sbjct: 336 QDPIADSARAILDGHIVLSRRL 357
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 70.2 bits (173), Expect = 6e-13
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 312 TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 371
+++V+ATA ++ ++ A + A+ E+FRD GK L++ D L++ A+A R+++L + P
Sbjct: 194 SVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEP 253
Query: 372 PGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDG 431
P + YP VF +L+ER+ E G GS+TA + + D I +I DG
Sbjct: 254 PATKGYPPSVFAKLPQLVERAGNGEE--GKGSITAFYTVLVEGDDQQDPIADAARAILDG 311
Query: 432 QIFLETEL 439
I L EL
Sbjct: 312 HIVLSREL 319
Score = 40.5 bits (96), Expect = 0.002
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 38/124 (30%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTAL--------AIDTI-------------- 227
L G++A++ L+ +GRGQR I GK+ L D +
Sbjct: 121 LDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGERGREVKE 180
Query: 228 -INQ--------KSI-YAAP------LQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQA 271
I +S+ AA ++ A + A+ E+FRD GK L++ D L++ A
Sbjct: 181 FIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFA 240
Query: 272 VAYR 275
+A R
Sbjct: 241 MAQR 244
Score = 38.6 bits (91), Expect = 0.008
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
Query: 455 VVVFGNDRL----------IKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRP 497
VV F DR+ ++ G V + +PVG+ LLGRV+D LG RP
Sbjct: 38 VVGFRGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLLGRVIDGLG-RP 89
Score = 37.5 bits (88), Expect = 0.017
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A+A R+++L + PP + YP VF +L+ER+ E G GS+TA + + D
Sbjct: 240 AMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEE--GKGSITAFYTVLVEGDDQ 297
Query: 121 SAYIPTNVISITDGQIFLETEL 142
I +I DG I L EL
Sbjct: 298 QDPIADAARAILDGHIVLSREL 319
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 70.2 bits (172), Expect = 8e-13
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 4/156 (2%)
Query: 284 CIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN 343
+ IG++ V + ++ + ++V AT+ + + A + ++ E+FRD
Sbjct: 191 TVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQ 250
Query: 344 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGS 403
GK L++ D +++ A A R++ L PP R YP VF RL+ER A S+ GS
Sbjct: 251 GKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMER-AGQSDK---GS 306
Query: 404 LTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 439
+TAL + + D++ + SI DG I L +L
Sbjct: 307 ITALYTVLVEGDDMTEPVADETRSILDGHIILSRKL 342
Score = 44.4 bits (105), Expect = 1e-04
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R++ L PP R YP VF RL+ER A S+ GS+TAL + + D+
Sbjct: 265 ARAQREIGLAAGEPPTRRGYPPSVFAALPRLMER-AGQSDK---GSITALYTVLVEGDDM 320
Query: 121 SAYIPTNVISITDGQIFLETEL 142
+ + SI DG I L +L
Sbjct: 321 TEPVADETRSILDGHIILSRKL 342
Score = 35.5 bits (82), Expect = 0.061
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 470 VKRTGAIVDVPVGEDLLGRVVDALG 494
V TG + V VGE LLGRV+D LG
Sbjct: 88 VSPTGTMHQVGVGEHLLGRVLDGLG 112
Score = 32.4 bits (74), Expect = 0.56
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 186 KYNLLSAGIKAVDSLVPI-------GRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPL 238
K LL++ I++ + V + GR RE I + G+ L ++ S +
Sbjct: 175 KSTLLASLIRSAEVDVTVLALIGERGREVREFI--ESDLGEEGLRKAVLVVATSDRPSME 232
Query: 239 QYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276
+ A + ++ E+FRD GK L++ D +++ A A R+
Sbjct: 233 RAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQRE 270
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 69.5 bits (170), Expect = 1e-12
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 5/156 (3%)
Query: 289 IGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGC-AMGEFFRDNGKHA 347
IG++ V + ++ + M +++V+A A D +PL + C A+ ++RD G
Sbjct: 189 IGERGREVKEFIEHSLQAAGMAKSVVVAAPA-DESPLMRIKATELCHAIATYYRDKGHDV 247
Query: 348 LIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTAL 407
L++ D L++ A+A R+++L L PP + YP F + RL E SA S G G++TA+
Sbjct: 248 LLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAE-SAGNSS--GNGTMTAI 304
Query: 408 PVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 443
+ + D I ++ DG I L +L G
Sbjct: 305 YTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAG 340
Score = 41.8 bits (98), Expect = 8e-04
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A+A R+++L L PP + YP F + RL E SA S G G++TA+ + + D
Sbjct: 258 AMAQREIALSLGEPPATKGYPPSAFSIIPRLAE-SAGNSS--GNGTMTAIYTVLAEGDDQ 314
Query: 121 SAYIPTNVISITDGQIFLETEL 142
I ++ DG I L +L
Sbjct: 315 QDPIVDCARAVLDGHIVLSRKL 336
Score = 30.6 bits (69), Expect = 2.3
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 43/161 (26%)
Query: 158 IGDRQTGKTALAIDTIINQKRKK----RRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIG 213
+G+ GK L T + Q+ + +RR + L G+ A++ L+ IG+GQR ++
Sbjct: 104 LGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVD-TPLDVGVNAINGLLTIGKGQRVGLMA 162
Query: 214 DRQTGKTAL------------AIDTIINQ-------------------KSIYAA------ 236
GK+ L + +I + KS+ A
Sbjct: 163 GSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222
Query: 237 PLQYLAPYSGC-AMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276
PL + C A+ ++RD G L++ D L++ A+A R+
Sbjct: 223 PLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQRE 263
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 69.0 bits (169), Expect = 2e-12
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 289 IGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCA-MGEFFRDNGKHA 347
IG++ V + ++ + + +++V++ A DA PL L C + E+FRD GK+
Sbjct: 202 IGERGREVKEFIEHILGEEGLKRSVVVASPADDA-PLMRLRAAMYCTRIAEYFRDKGKNV 260
Query: 348 LIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTAL 407
L++ D L++ A A R+++L + PP + YP VF +L+ER+ GGGS+TA
Sbjct: 261 LLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEP--GGGSITAF 318
Query: 408 PVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 443
+ ++ D I + + DG I L L +G
Sbjct: 319 YTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEG 354
Score = 41.6 bits (98), Expect = 0.001
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R+++L + PP + YP VF +L+ER+ GGGS+TA + ++ D
Sbjct: 271 AQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEP--GGGSITAFYTVLSEGDDQ 328
Query: 121 SAYIPTNVISITDGQIFLETEL 142
I + + DG I L L
Sbjct: 329 QDPIADSARGVLDGHIVLSRRL 350
Score = 37.8 bits (88), Expect = 0.014
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 46/144 (31%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALA-------------------------- 223
L GI++++ L+ +GRGQR + GK+ L
Sbjct: 152 LDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKE 211
Query: 224 -IDTIINQKSIYA----------APLQYLAPYSGCA-MGEFFRDNGKHALIIYDDLSKQA 271
I+ I+ ++ + APL L C + E+FRD GK+ L++ D L++ A
Sbjct: 212 FIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFA 271
Query: 272 VAYRQDEKKKLYCIYVAIGQKRST 295
A R+ I +AIG+ +T
Sbjct: 272 QAQRE--------IALAIGEPPAT 287
>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 458
Score = 66.3 bits (162), Expect = 1e-11
Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 278 EKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMG 337
E+ + ++ A+G +K ++GA+ ++ A D A + + P
Sbjct: 170 EESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAA 229
Query: 338 EFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMS 396
E+ + H L+I D++ A R++S PGR YPG ++ + + ER+ ++
Sbjct: 230 EYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVK 289
Query: 397 EAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGM 444
GS+T +P++ D++ IP IT+GQI L EL KG+
Sbjct: 290 GKK--GSITQMPILTMPGDDITHPIPDLTGYITEGQIVLSRELHRKGI 335
Score = 45.9 bits (109), Expect = 4e-05
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 63 AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSA 122
A R++S PGR YPG ++ + + ER+ ++ G S+T +P++ D++
Sbjct: 253 ALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVKGKKG--SITQMPILTMPGDDITH 310
Query: 123 YIPTNVISITDGQIFLETELFYK 145
IP IT+GQI L EL K
Sbjct: 311 PIPDLTGYITEGQIVLSRELHRK 333
Score = 37.0 bits (86), Expect = 0.022
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 442 KGMALNLEPDNVGVVVF-GNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
+G L+ V VF G L G V+ TG + +PV ED+LGR+++ G
Sbjct: 38 RGQVLDSSEGIAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSEDMLGRILNGSG 91
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional.
Length = 436
Score = 65.4 bits (160), Expect = 3e-11
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 300 VKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQA 358
++GA+ T++ TASD L P A+ E F + K L++ D++ A
Sbjct: 185 KDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMTNFA 244
Query: 359 VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVS 418
A +++S+ + + P YPG L+S L R K + GGS+T + V DV+
Sbjct: 245 DALKEISITMDQIPSNRGYPGS---LYSDLASRYEKAVDFEDGGSITIIAVTTMPGDDVT 301
Query: 419 AYIPTNVISITDGQIFL 435
+P N IT+GQ +L
Sbjct: 302 HPVPDNTGYITEGQFYL 318
Score = 47.3 bits (113), Expect = 1e-05
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A +++S+ + + P YPG L+S L R K + GGS+T + V DV
Sbjct: 244 ADALKEISITMDQIPSNRGYPGS---LYSDLASRYEKAVDFEDGGSITIIAVTTMPGDDV 300
Query: 121 SAYIPTNVISITDGQIFL 138
+ +P N IT+GQ +L
Sbjct: 301 THPVPDNTGYITEGQFYL 318
Score = 36.6 bits (85), Expect = 0.035
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 446 LNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
+ L+ D V + VFG R I GD V G + V E LLGR + G
Sbjct: 43 IRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSG 91
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 64.6 bits (157), Expect = 4e-11
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Query: 285 IYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNG 344
+ V IG++ V + + +IV AT+ A + A + + EFFRDNG
Sbjct: 185 VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNG 244
Query: 345 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSL 404
K +++ D L++ A A R+++L YP VF RLLER+ M E GS+
Sbjct: 245 KRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEK---GSI 300
Query: 405 TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 443
TA + + D++ + V S+ DG I L L +G
Sbjct: 301 TAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERG 339
Score = 33.4 bits (76), Expect = 0.29
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R+++L YP VF RLLER+ M E GS+TA + + D+
Sbjct: 258 ARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEK---GSITAFYTVLVEGDDM 313
Query: 121 SAYIPTNVISITDGQIFLETEL 142
+ + V S+ DG I L L
Sbjct: 314 NEPLADEVRSLLDGHIVLSRRL 335
Score = 30.3 bits (68), Expect = 2.7
Identities = 14/19 (73%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 479 VPVGEDLLGRVVDALGIRP 497
VPVGE LLGRV+D G RP
Sbjct: 91 VPVGEALLGRVIDGFG-RP 108
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 63.2 bits (154), Expect = 1e-10
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 314 IVSATASDAAPLQYLAPYSGC----AMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369
+V A +D +PL L GC + E+FRD G + L++ D L++ A A R+++L +
Sbjct: 220 VVVAAPADTSPLMRL---KGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVG 276
Query: 370 RPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
PP + YP VF L+ER+ G GS+TA + T+ D+ I +I
Sbjct: 277 EPPATKGYPPSVFAKLPALVERAGNGGP--GQGSITAFYTVLTEGDDLQDPIADASRAIL 334
Query: 430 DGQIFLETEL 439
DG I L EL
Sbjct: 335 DGHIVLSREL 344
Score = 40.5 bits (95), Expect = 0.002
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R+++L + PP + YP VF L+ER+ G GS+TA + T+ D+
Sbjct: 265 AQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGP--GQGSITAFYTVLTEGDDL 322
Query: 121 SAYIPTNVISITDGQIFLETEL 142
I +I DG I L EL
Sbjct: 323 QDPIADASRAILDGHIVLSREL 344
Score = 29.7 bits (67), Expect = 4.2
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 44/128 (34%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALA-------------------------- 223
L G++A+++++ +G+GQR + GK+ L
Sbjct: 146 LDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVKE 205
Query: 224 -IDTIIN----QKSIYAA------PLQYLAPYSGC----AMGEFFRDNGKHALIIYDDLS 268
I+ I+ +S+ A PL L GC + E+FRD G + L++ D L+
Sbjct: 206 FIEEILGEEGRARSVVVAAPADTSPLMRL---KGCETATTIAEYFRDQGLNVLLLMDSLT 262
Query: 269 KQAVAYRQ 276
+ A A R+
Sbjct: 263 RYAQAQRE 270
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 62.3 bits (152), Expect = 2e-10
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 307 GAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSL 366
+ + V AT+ ++ ++ LAP + A+ E+FRD G++ L+I D +++ A A R+++L
Sbjct: 216 DNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVAL 275
Query: 367 LLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVI 426
PP YP VF RLLER+ +E GGGS+T + + D + + ++
Sbjct: 276 AAGEPPVARGYPPSVFSELPRLLERAGPGAE--GGGSITGIFSVLVDGDDHNDPVADSIR 333
Query: 427 SITDGQIFLETEL 439
DG I L+ +
Sbjct: 334 GTLDGHIVLDRAI 346
Score = 31.9 bits (73), Expect = 0.84
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R+++L PP YP VF RLLER+ +E GGGS+T + + D
Sbjct: 267 AHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAE--GGGSITGIFSVLVDGDDH 324
Query: 121 SAYIPTNVISITDGQIFLETEL 142
+ + ++ DG I L+ +
Sbjct: 325 NDPVADSIRGTLDGHIVLDRAI 346
Score = 30.4 bits (69), Expect = 2.8
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 241 LAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276
LAP + A+ E+FRD G++ L+I D +++ A A R+
Sbjct: 237 LAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAARE 272
>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 59.2 bits (144), Expect = 2e-09
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
++V AT+ + A ++ A Y A+ E+FRD GK L + D +++ A+A R++ L PP
Sbjct: 216 VVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPP 275
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
+ Y VF RLLER+ G G++T L + D + + V I DG
Sbjct: 276 TTKGYTPTVFAELPRLLERAGPGPI--GEGTITGLFTVLVDGDDHNEPVADAVRGILDGH 333
Query: 433 IFLE 436
I +E
Sbjct: 334 IVME 337
Score = 32.6 bits (75), Expect = 0.56
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A+A R++ L PP + Y VF RLLER+ G G++T L + D
Sbjct: 261 AMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGPI--GEGTITGLFTVLVDGDDH 318
Query: 121 SAYIPTNVISITDGQIFLE 139
+ + V I DG I +E
Sbjct: 319 NEPVADAVRGILDGHIVME 337
Score = 31.1 bits (71), Expect = 1.5
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 204 GRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALII 263
GR +E + D G LA ++ S A ++ A Y A+ E+FRD GK L +
Sbjct: 196 GREVQEFLQDD--LGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCL 253
Query: 264 YDDLSKQAVAYRQ 276
D +++ A+A R+
Sbjct: 254 MDSVTRFAMAQRE 266
>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 466
Score = 59.0 bits (143), Expect = 3e-09
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 5/162 (3%)
Query: 285 IYVAIGQKRSTVAQIVKR-LTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-D 342
++ A+G T A+ K+ ++G+M + A+D + + P E+
Sbjct: 186 VFAAMGVNMET-ARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEYLAYQ 244
Query: 343 NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGG 402
KH L+I D+S A A R++S PGR +PG ++ + + ER+ ++ G
Sbjct: 245 CEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NG 302
Query: 403 SLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGM 444
S+T +P++ D++ IP IT+GQI+++ +L + +
Sbjct: 303 SITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQI 344
Score = 42.0 bits (99), Expect = 6e-04
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R++S PGR +PG ++ + + ER+ ++ GS+T +P++ D+
Sbjct: 260 ADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSITQIPILTMPNDDI 317
Query: 121 SAYIPTNVISITDGQIFLETEL 142
+ IP IT+GQI+++ +L
Sbjct: 318 THPIPDLTGYITEGQIYVDRQL 339
Score = 28.9 bits (65), Expect = 6.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 473 TGAIVDVPVGEDLLGRVVDALGI 495
TG I+ PV ED+LGRV + G
Sbjct: 70 TGDILRTPVSEDMLGRVFNGSGK 92
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 57.7 bits (139), Expect = 7e-09
Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 289 IGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHAL 348
+G++ V +++ M +++V AT+ ++ +Q A ++ E+FRD G + L
Sbjct: 190 VGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVL 249
Query: 349 IIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHS---RLLERSAKMSEAHGGGSLT 405
++ D +++ A A R + + ++ P G + S +LLERS K + GS+T
Sbjct: 250 LMMDSVTRFADARRSVDIAVKELP----IGGKTLLMESYMKKLLERSGKTQK----GSIT 301
Query: 406 ALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 439
+ + D++ +P I DG I L+ EL
Sbjct: 302 GIYTVLVDGDDLNGPVPDLARGILDGHIVLKREL 335
Score = 32.3 bits (73), Expect = 0.60
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 38/126 (30%)
Query: 188 NLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTAL---------AIDTIIN--------- 229
++ GIK++DS++ IG GQ+ I GK+ L A +I+
Sbjct: 138 DVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREV 197
Query: 230 -------------QKSIYAAP-------LQYLAPYSGCAMGEFFRDNGKHALIIYDDLSK 269
+KS+ +Q A ++ E+FRD G + L++ D +++
Sbjct: 198 KDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTR 257
Query: 270 QAVAYR 275
A A R
Sbjct: 258 FADARR 263
Score = 30.3 bits (68), Expect = 3.0
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 90 RLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 142
+LLERS K + GS+T + + D++ +P I DG I L+ EL
Sbjct: 287 KLLERSGKTQK----GSITGIYTVLVDGDDLNGPVPDLARGILDGHIVLKREL 335
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 57.6 bits (139), Expect = 8e-09
Identities = 57/243 (23%), Positives = 97/243 (39%), Gaps = 54/243 (22%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
GIKA+D+ + +G+GQR + + +GK++L S A G
Sbjct: 144 GIKAIDAFLTLGKGQRIGVFSEPGSGKSSL---------------------LSTIAKG-- 180
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
SK + + IG++ V + +++ + A T
Sbjct: 181 ---------------SKSTIN-----------VIALIGERGREVREYIEQHKEGLAAQRT 214
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
II+++ A + AP + +A + + E+FRD G L I D LS+ A ++++L
Sbjct: 215 IIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETL 274
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
Y VF+ S ER+ + GS+TAL I + + S+ DG
Sbjct: 275 SAHHYAASVFHHVSEFTERAGNNDK----GSITALYAILHYPNHPDIFTDY-LKSLLDGH 329
Query: 433 IFL 435
FL
Sbjct: 330 FFL 332
>gnl|CDD|217261 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family,
beta-barrel domain. This family includes the ATP
synthase alpha and beta subunits the ATP synthase
associated with flagella.
Length = 69
Score = 50.6 bits (122), Expect = 2e-08
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 408 PVIETQAGDVSAYIP--TNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIK 465
PV++ +P N + + +E G LNL D V VVV G +
Sbjct: 7 PVVD--VEFGIGRLPGLYNALEVE----LVEFGNGLLGEVLNLGGDKVRVVVMGGTDGLS 60
Query: 466 EGDIVKRTG 474
GD VKRTG
Sbjct: 61 RGDEVKRTG 69
>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 56.0 bits (136), Expect = 3e-08
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 285 IYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-DN 343
++ A+G ++ ++GA+ +++ A D A + L P E+ +
Sbjct: 179 VFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAEYLAFEK 238
Query: 344 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSAKMSEAHG 400
G H L+I D++ A R++S PGR YPG Y+++ L ER+ ++ G
Sbjct: 239 GMHVLVILTDMTNYCEALREISAAREEVPGRRGYPG---YMYTDLATIYERAGRIKGKKG 295
Query: 401 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 443
S+T +P++ D++ IP IT+GQI L EL KG
Sbjct: 296 --SITQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKG 336
Score = 39.0 bits (92), Expect = 0.006
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 63 AYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSAKMSEAHGGGSLTALPVIETQAGD 119
A R++S PGR YPG Y+++ L ER+ ++ G S+T +P++ D
Sbjct: 255 ALREISAAREEVPGRRGYPG---YMYTDLATIYERAGRIKGKKG--SITQIPILTMPDDD 309
Query: 120 VSAYIPTNVISITDGQIFLETELFYK 145
++ IP IT+GQI L EL K
Sbjct: 310 ITHPIPDLTGYITEGQIVLSRELHRK 335
Score = 35.2 bits (82), Expect = 0.092
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDI-VKRTGAIVDVPVGEDLLGRVVDALGIRP 497
+G L + D V VF + D V+ TG + +PV ED+LGR+ D LG RP
Sbjct: 40 RGQVLEVSEDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVSEDMLGRIFDGLG-RP 95
>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional.
Length = 1017
Score = 55.8 bits (134), Expect = 4e-08
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 285 IYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMG 337
IY+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 686 IYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 745
Query: 338 EFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------R 391
E+FRD G ++ D S+ A A R++S L PG E YP YL S+L E R
Sbjct: 746 EYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGR 802
Query: 392 SAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISI 428
+ + GS++ + + GD S + N + +
Sbjct: 803 VVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRV 839
Score = 31.9 bits (72), Expect = 1.1
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE------RSAKMSEAHGGGSLTALPVIE 114
A A R++S L PG E YP YL S+L E R + + GS++ + +
Sbjct: 766 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 822
Query: 115 TQAGDVSAYIPTNVISI 131
GD S + N + +
Sbjct: 823 PPGGDFSEPVVQNTLRV 839
Score = 31.5 bits (71), Expect = 1.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 214 DRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVA 273
D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A A
Sbjct: 709 DPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEA 768
Query: 274 YRQ 276
R+
Sbjct: 769 LRE 771
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 55.0 bits (133), Expect = 6e-08
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 285 IYVAIGQKRSTVAQIVKR---LTDSGA----MGYTIIVSATASDAAPLQYLAPYSGCAMG 337
IYV G++ + + ++++ L D M T++++ T++ + + Y+G +
Sbjct: 254 IYVGCGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIA 313
Query: 338 EFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSAK 394
E++RD G ++ D S+ A A R++S L PG E YP YL SRL ER+ +
Sbjct: 314 EYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLGSRLAEFYERAGR 370
Query: 395 MSEAHGG----GSLTALPVIETQAGDVSAYIPTNVISIT 429
GS+T + + GD S + N + +
Sbjct: 371 -VRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVV 408
Score = 32.6 bits (75), Expect = 0.63
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 244 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276
Y+G + E++RD G ++ D S+ A A R+
Sbjct: 307 YTGITIAEYYRDMGYDVALMADSTSRWAEALRE 339
Score = 30.3 bits (69), Expect = 2.9
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSAKMSEAHGG----GSLTALPVI 113
A A R++S L PG E YP YL SRL ER+ + GS+T + +
Sbjct: 334 AEALREISGRLEEMPGEEGYPA---YLGSRLAEFYERAGR-VRLVSPEERFGSITVIGAV 389
Query: 114 ETQAGDVSAYIPTNVISIT 132
GD S + N + +
Sbjct: 390 SPPGGDFSEPVTQNTLRVV 408
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 52.1 bits (126), Expect = 5e-07
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 9/81 (11%)
Query: 331 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL-- 388
Y+G + E++RD G L++ D S+ A A R++S L PG E YP YL SRL
Sbjct: 310 YTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASRLAE 366
Query: 389 -LERSAKMSEAHGG--GSLTA 406
ER+ ++ + GG GS+T
Sbjct: 367 FYERAGRV-KTLGGEEGSVTI 386
Score = 30.5 bits (70), Expect = 2.5
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSAKMSEAHGG--GSLTA 109
A A R++S L PG E YP YL SRL ER+ ++ + GG GS+T
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASRLAEFYERAGRV-KTLGGEEGSVTI 386
Score = 29.7 bits (68), Expect = 4.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 244 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYR 275
Y+G + E++RD G L++ D S+ A A R
Sbjct: 310 YTGITIAEYYRDMGYDVLLMADSTSRWAEALR 341
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 578
Score = 50.9 bits (122), Expect = 1e-06
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 285 IYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMG 337
+Y+ G++ + + +++ T M T++++ T++ + + Y+G +
Sbjct: 252 VYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIA 311
Query: 338 EFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE--RSAKM 395
E+FRD G ++ D S+ A A R++S L PG E YP YL SRL E A
Sbjct: 312 EYFRDMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPA---YLASRLAEFYERAGR 368
Query: 396 SEAHGG----GSLTALPVIETQAGDVSAYIPTNVISI 428
+ GG GS+T + + GD S + N + I
Sbjct: 369 VKTLGGEERVGSVTVIGAVSPPGGDFSEPVTQNTLRI 405
Score = 30.1 bits (68), Expect = 3.3
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE--RSAKMSEAHGG----GSLTALPVIE 114
A A R++S L PG E YP YL SRL E A + GG GS+T + +
Sbjct: 332 AEAMREISGRLEEMPGEEGYPA---YLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVS 388
Query: 115 TQAGDVSAYIPTNVISI 131
GD S + N + I
Sbjct: 389 PPGGDFSEPVTQNTLRI 405
Score = 30.1 bits (68), Expect = 3.9
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 214 DRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVA 273
D +TGK + +I S + + Y+G + E+FRD G ++ D S+ A A
Sbjct: 275 DPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEA 334
Query: 274 YRQ 276
R+
Sbjct: 335 MRE 337
>gnl|CDD|238554 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A.
These ATPases couple ATP hydrolysis to the build up of a
H+ gradient, but V-type ATPases do not catalyze the
reverse reaction. The Vacuolar (V-type) ATPase is found
in the membranes of vacuoles, the golgi apparatus and in
other coated vesicles in eukaryotes. Archaea have a
protein which is similar in sequence to V-ATPases, but
functions like an F-ATPase (called A-ATPase). A similar
protein is also found in a few bacteria.
Length = 369
Score = 49.9 bits (120), Expect = 2e-06
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 20/118 (16%)
Query: 285 IYVAIGQKRSTVAQIVKRL-------TDSGAMGYTIIVSAT-----ASDAAPLQYLAPYS 332
IYV G++ + + ++++ T M T++++ T A+ A + Y+
Sbjct: 187 IYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASI-----YT 241
Query: 333 GCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 390
G + E+FRD G + ++ D S+ A A R++S L PG E YP YL +RL
Sbjct: 242 GITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLGARLAS 296
Score = 30.3 bits (69), Expect = 2.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 244 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276
Y+G + E+FRD G + ++ D S+ A A R+
Sbjct: 240 YTGITIAEYFRDMGYNVALMADSTSRWAEALRE 272
>gnl|CDD|233245 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 591
Score = 46.3 bits (110), Expect = 3e-05
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 22/166 (13%)
Query: 285 IYVAIGQKRSTVAQIVK---RLT------DSGAMGYTIIVSATASDAAPLQYLAPYSGCA 335
+YV G++ + +A+++ LT + M T +V+ T++ + + Y+G
Sbjct: 256 VYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGIT 315
Query: 336 MGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERS 392
+ E+FRD G + ++ D S+ A A R++S L P YP YL +RL ER+
Sbjct: 316 LAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERA 372
Query: 393 AKMSEAHGG----GSLTALPVIETQAGDVSAYIPTNVISITDGQIF 434
++ + G GS++ + + GD S + + + I Q+F
Sbjct: 373 GRV-KCLGSPEREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVF 415
Score = 30.9 bits (70), Expect = 2.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 244 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 276
Y+G + E+FRD G + ++ D S+ A A R+
Sbjct: 311 YTGITLAEYFRDMGYNVSMMADSTSRWAEALRE 343
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.
Length = 461
Score = 39.4 bits (93), Expect = 0.004
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 448 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
L+ V + G+ + GD V+ TG ++VPVGE +LGR++D LG
Sbjct: 47 LDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVGEAVLGRLLDVLG 93
Score = 31.7 bits (73), Expect = 1.0
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 170 IDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229
I + I + +L GIK +D L PI +G + + G GKT L ++ I N
Sbjct: 110 IHSTIP---PLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFN 166
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 39.4 bits (92), Expect = 0.004
Identities = 46/218 (21%), Positives = 86/218 (39%), Gaps = 47/218 (21%)
Query: 182 RRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYL 241
RR K + GIKA+D LVP+ RG + + G GKT L + I N
Sbjct: 114 RRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVG--------- 164
Query: 242 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVK 301
Q + ++C IG++ ++ +
Sbjct: 165 ----------------------------------QHQGVSIFC---GIGERCREGEELYR 187
Query: 302 RLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN-GKHALIIYDDLSKQAVA 360
+ ++G + T++V ++ ++ ++ M E+FRD+ + L++ D++ + A
Sbjct: 188 EMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQA 247
Query: 361 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEA 398
++S LL + P R Y + + L ER A S+
Sbjct: 248 GSEVSGLLGQMPSRLGYQPTLGTELAELEERIATTSDG 285
Score = 32.5 bits (74), Expect = 0.64
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 444 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
+ L+ +V + + + G V+ +G + PVG+ L R+ D G
Sbjct: 38 VLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTLSRMFDVFG 88
>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy
production and conversion].
Length = 468
Score = 39.1 bits (92), Expect = 0.005
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 464 IKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
+ G V TG + VPVG+ LGR+ + LG
Sbjct: 65 LVRGLEVIDTGKPISVPVGKGTLGRIFNVLG 95
Score = 29.9 bits (68), Expect = 3.7
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 189 LLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229
+L GIK +D L P +G + + G GKT L I +IN
Sbjct: 130 ILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL-IQELIN 169
>gnl|CDD|238548 cd01128, rho_factor, Transcription termination factor rho is a
bacterial ATP-dependent RNA/DNA helicase. It is a
homohexamer. Each monomer consists of an N-terminal
domain of the OB fold, which is responsible for binding
to cysteine rich nucleotides. This alignment is of the
C-terminal ATP binding domain.
Length = 249
Score = 35.8 bits (83), Expect = 0.033
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 195 KAVDSLVPIGRGQRELIIGDRQTGKTAL 222
+ VD PIG+GQR LI+ + GKT L
Sbjct: 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTL 32
>gnl|CDD|236447 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.
Length = 463
Score = 36.6 bits (86), Expect = 0.034
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 467 GDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G V TGA + VPVG+ LGR+ + LG
Sbjct: 67 GMEVIDTGAPISVPVGKATLGRIFNVLG 94
>gnl|CDD|217171 pfam02663, FmdE, FmdE, Molybdenum formylmethanofuran dehydrogenase
operon. This entry represents the FmdE protein that is
encode by the molybdenum formylmethanofuran
dehydrogenase operon. FmdE does not co-purify with the
molybdenum isozyme that is formed by FmdC and FmdB. The
domain is typically found as a single copy, but is
repeated in some sequence two to three times. It is also
common place to find this domain co-occurs with a
zinc-beta ribbon domain, suggesting that is may bind
nucleic acid and be involved in transcription
regulation.
Length = 126
Score = 33.9 bits (78), Expect = 0.063
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 284 CIYVAIGQKRSTVAQIVKRLTDSGAMG--YTIIVSATASDAAPLQYLAPYSGCAMGE--- 338
C +A+G + +A+ +IV + A +Q L +GC +G+
Sbjct: 7 CPGLALGYR---MAEYALEELGLDKDDEELVVIVETDSCLADAVQVL---TGCTLGKGNL 60
Query: 339 FFRDNGKHALIIYDDLSKQAV 359
+D GK A YD + + V
Sbjct: 61 IVKDYGKMAATFYDRGTGEGV 81
Score = 29.2 bits (66), Expect = 2.5
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 238 LQYLAPYSGCAMGE---FFRDNGKHALIIYDDLSKQAVAYRQDEKK 280
+Q L +GC +G+ +D GK A YD + + V D +K
Sbjct: 47 VQVL---TGCTLGKGNLIVKDYGKMAATFYDRGTGEGVRVVVDPEK 89
>gnl|CDD|236490 PRK09376, rho, transcription termination factor Rho; Provisional.
Length = 416
Score = 35.1 bits (82), Expect = 0.079
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 197 VDSLVPIGRGQRELIIGDRQTGKTAL 222
+D + PIG+GQR LI+ + GKT L
Sbjct: 160 IDLIAPIGKGQRGLIVAPPKAGKTVL 185
>gnl|CDD|224080 COG1158, Rho, Transcription termination factor [Transcription].
Length = 422
Score = 34.9 bits (81), Expect = 0.099
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 197 VDSLVPIGRGQRELIIGDRQTGKTAL 222
+D + PIG+GQR LI+ + GKT L
Sbjct: 164 IDLISPIGKGQRGLIVAPPKAGKTTL 189
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 461
Score = 34.7 bits (80), Expect = 0.13
Identities = 50/257 (19%), Positives = 90/257 (35%), Gaps = 51/257 (19%)
Query: 189 LLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCA 248
+L GIK +D L P +G + + G GKT L + I N
Sbjct: 126 ILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINN------------------- 166
Query: 249 MGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGA 308
+A Y ++ +G++ + + +SG
Sbjct: 167 -----------------------IAKEHGG----YSVFAGVGERTREGNDLYHEMKESGV 199
Query: 309 MGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLL 367
+ T +V ++ + +G M E+FRD G+ L+ D++ + A ++S L
Sbjct: 200 IDKTALVYGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSAL 259
Query: 368 LRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVIS 427
L R P Y + L ER GS+T++ + A D++ P +
Sbjct: 260 LGRMPSAVGYQPTLATEMGELQERITSTK----TGSITSVQAVYVPADDLTDPAPATTFA 315
Query: 428 ITDGQIFLETELFYKGM 444
D L ++ G+
Sbjct: 316 HLDATTVLSRKIAELGI 332
Score = 33.9 bits (78), Expect = 0.21
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRV 489
+ ++ LE +A +L D V + G+ + G V TGA + VPVG++ LGR+
Sbjct: 36 ESELTLE-------VAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVGKETLGRI 88
Query: 490 VDALG 494
+ LG
Sbjct: 89 FNVLG 93
>gnl|CDD|237150 PRK12608, PRK12608, transcription termination factor Rho;
Provisional.
Length = 380
Score = 34.3 bits (79), Expect = 0.15
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 195 KAVDSLVPIGRGQRELIIGDRQTGKTAL 222
+ VD + PIG+GQR LI+ + GKT L
Sbjct: 122 RVVDLVAPIGKGQRGLIVAPPRAGKTVL 149
>gnl|CDD|239113 cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleoside hydrolases
similar to the Inosine-adenosine-guanosine-preferring
nucleoside hydrolase from Trypanosoma vivax.
Nucleoside hydrolases cleave the N-glycosidic bond in
nucleosides generating ribose and the respective base.
Nucleoside hydrolases vary in their substrate
specificity. This group contains eukaryotic and
bacterial proteins similar to the purine specific
inosine-adenosine-guanosine-preferring nucleoside
hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is
of the order of a thousand to ten thousand fold more
specific towards the naturally occurring purine
nucleosides, than towards the pyrimidine nucleosides. .
Length = 312
Score = 33.5 bits (77), Expect = 0.21
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 423 TNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVG 482
NVI DG + L + N + D G+ V G D D V V
Sbjct: 1 KNVIFDHDGNVDDLVALLL--LLKNEKVDLKGIGVSGID-----ADCYVE----PAVSVT 49
Query: 483 EDLLGRVVDALGIRPAINVGLSVSR 507
L+ D LG R AI VG SR
Sbjct: 50 RKLI----DRLGQRDAIPVGKGGSR 70
>gnl|CDD|162030 TIGR00767, rho, transcription termination factor Rho. This RNA
helicase, the transcription termination factor Rho,
occurs in nearly all bacteria but is missing from the
Cyanobacteria, the Mollicutes (Mycoplasmas), and various
Lactobacillales including Streptococcus. It is also
missing, of course, from the Archaea, which also lack
Nus factors. Members of this family from Micrococcus
luteus, Mycobacterium tuberculosis, and related species
have a related but highly variable long, highly charged
insert near the amino end. Members of this family differ
in the specificity of RNA binding [Transcription,
Transcription factors].
Length = 415
Score = 33.5 bits (77), Expect = 0.29
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 197 VDSLVPIGRGQRELIIGDRQTGKTAL 222
+D PIG+GQR LI+ + GKT L
Sbjct: 159 LDLFAPIGKGQRGLIVAPPKAGKTVL 184
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 32.9 bits (76), Expect = 0.33
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 20/77 (25%)
Query: 459 GNDRLIKEGDIVKRT-GAIVD---------VPVGE-------DLLGRVVDAL--GIRPAI 499
G+ +++KEGDIVK GA +D VGE LL +AL GI A+
Sbjct: 82 GDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIE-AV 140
Query: 500 NVGLSVSRVGSAAQTRA 516
G + +G A Q A
Sbjct: 141 KPGARLGDIGRAIQEYA 157
>gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase;
Provisional.
Length = 380
Score = 33.1 bits (76), Expect = 0.34
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 238 LQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQDEKKKLY-CIYVAIGQKRST 295
+ +L PY A R +G+ A + +DL+K V R K+L I V++G+ T
Sbjct: 310 VPFLEPYPSDANFILCRVTSGRDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVGKPEHT 369
>gnl|CDD|225102 COG2191, COG2191, Formylmethanofuran dehydrogenase subunit E
[Energy production and conversion].
Length = 206
Score = 30.9 bits (70), Expect = 1.1
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 284 CIYVAIGQKRSTVAQIVKRLTDSGAMGYTI-IVSATASDAA-PLQYLAPYSGCAMGE--- 338
C +A+G + +A I ++ I + T S +Q GC +G
Sbjct: 26 CPGLALGYR---MALIAMEELGVRSVDEEILAIVETNSCFPDGVQVAT---GCTIGNGNL 79
Query: 339 FFRDNGKHALIIYDDLSKQAV 359
D GK AL + S +AV
Sbjct: 80 ILLDYGKLALTLVKRGSGKAV 100
Score = 28.9 bits (65), Expect = 5.6
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 17/89 (19%)
Query: 211 IIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGE---FFRDNGKHALIIYDDL 267
+G R + LAI + S + +Q GC +G D GK AL +
Sbjct: 42 ELGVRSVDEEILAI---VETNSCFPDGVQVAT---GCTIGNGNLILLDYGKLALTLVKRG 95
Query: 268 SKQAV--------AYRQDEKKKLYCIYVA 288
S +AV EK +L+ A
Sbjct: 96 SGKAVRVYVKREILDEDPEKTELFPKVRA 124
>gnl|CDD|218820 pfam05943, DUF877, Protein of unknown function (DUF877). This
family consists of a number of uncharacterized bacterial
proteins. The function of this family is unknown.
Length = 423
Score = 31.4 bits (72), Expect = 1.3
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 103 GGGSLTALPV--IETQAGDVSAYIPTNVISITDGQIF 137
GGG++ LPV ET GD+ A PT V ITD +
Sbjct: 239 GGGAVENLPVHTFETDDGDIQAKCPTEV-LITDRREA 274
Score = 31.4 bits (72), Expect = 1.3
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 400 GGGSLTALPV--IETQAGDVSAYIPTNVISITDGQIF 434
GGG++ LPV ET GD+ A PT V ITD +
Sbjct: 239 GGGAVENLPVHTFETDDGDIQAKCPTEV-LITDRREA 274
>gnl|CDD|199837 cd10279, PQQ_ADH_II, PQQ_like domain of the quinohemoprotein
alcohol dehydrogenase (type II). This family of
monomeric and soluble type II alcohol dehydrogenases
utilizes pyrroloquinoline quinone (PQQ) as a cofactor
and is related to ethanol, methanol, and membrane-bound
glucose dehydrogenases. The alignment model contains an
8-bladed beta-propeller.
Length = 549
Score = 31.5 bits (72), Expect = 1.3
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 20/83 (24%)
Query: 145 KVDRGSINCGQLIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIG 204
KV G++ G+LI D +TGK ++DTI +K Y + A + V IG
Sbjct: 104 KVFVGTL-DGRLIALDAKTGKEVWSVDTIDPRKP--------YTITGA-PRVAKGKVVIG 153
Query: 205 RGQRELIIG--------DRQTGK 219
G E G D +TGK
Sbjct: 154 NGGAEF--GVRGYVSAYDAETGK 174
>gnl|CDD|238553 cd01133, F1-ATPase_beta, F1 ATP synthase beta subunit,
nucleotide-binding domain. The F-ATPase is found in
bacterial plasma membranes, mitochondrial inner
membranes and in chloroplast thylakoid membranes. It has
also been found in the archaea Methanosarcina barkeri.
It uses a proton gradient to drive ATP synthesis and
hydrolyzes ATP to build the proton gradient. The
extrinisic membrane domain, F1, is composed of alpha,
beta, gamma, delta and epsilon subunits with a
stoichiometry of 3:3:1:1:1. The beta subunit of ATP
synthase is catalytic.
Length = 274
Score = 31.0 bits (71), Expect = 1.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 189 LLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIIN 229
+L GIK +D L P +G + + G GKT L ++ I N
Sbjct: 52 ILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 92
>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit.
Length = 494
Score = 31.2 bits (71), Expect = 1.5
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 464 IKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRPAINVG 502
+ G V TGA + VPVG LGR+ + LG P N+G
Sbjct: 81 LMRGMEVIDTGAPLSVPVGGATLGRIFNVLG-EPVDNLG 118
>gnl|CDD|217111 pfam02570, CbiC, Precorrin-8X methylmutase. This is a family
Precorrin-8X methylmutases also known as Precorrin
isomerase, CbiC/CobH, EC:5.4.1.2. This enzyme catalyzes
the reaction: Precorrin-8X <=> hydrogenobyrinate. This
enzyme is part of the Cobalamin (vitamin B12)
biosynthetic pathway and catalyzes a methyl
rearrangement.
Length = 198
Score = 30.1 bits (69), Expect = 2.1
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 443 GMALNLEPDNVGVVVFGND--------RLIKEGDIVKRTGAIVDVPVG 482
M L E +VV GN LI+EG I R ++ +PVG
Sbjct: 110 AMELAAERLPGAIVVIGNAPTALFELLELIEEGKI--RPALVIGMPVG 155
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 30.5 bits (69), Expect = 2.2
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 459 GNDRLIKEGDIVK-RTGAIVD---------VPVGE---DLLGRVVDAL--GIRPAINVGL 503
G+ + K+GD+VK GA VD V +G+ +L+ DAL I+ I G+
Sbjct: 70 GDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGDQYDNLVKAAKDALYTAIK-EIRAGV 128
Query: 504 SVSRVGSAAQ 513
V +G A Q
Sbjct: 129 RVGEIGKAIQ 138
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 29.8 bits (68), Expect = 2.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 203 IGRGQRELIIGDRQTGKTAL 222
I G R LI G TGK++L
Sbjct: 24 IKPGDRLLITGPSGTGKSSL 43
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 29.9 bits (68), Expect = 3.1
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 16/70 (22%)
Query: 459 GNDRLIKEGDIVK------RTGAIVDV-------PVGEDLLGRVVDAL--GIRPAINVGL 503
G+D ++KEGD+VK G I D P +DLL +AL I+ +
Sbjct: 66 GDDTVLKEGDVVKLDFGAHVDGYIADSAFTVDFDPKYDDLLEAAKEALNAAIK-EAGPDV 124
Query: 504 SVSRVGSAAQ 513
+ +G A +
Sbjct: 125 RLGEIGEAIE 134
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 29.9 bits (68), Expect = 3.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 202 PIGRGQRELIIGDRQTGKT 220
PIG+GQR LI+ + GKT
Sbjct: 412 PIGKGQRGLIVSPPKAGKT 430
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 29.7 bits (68), Expect = 3.7
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 21/85 (24%)
Query: 455 VVVFG--NDRLIKEGDIVK-RTGAIVD---------VPVGE--DLLGRVVDA------LG 494
VV G +D+++KEGDIV I D VGE R+ + LG
Sbjct: 75 VVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEALYLG 134
Query: 495 IRPAINVGLSVSRVGSAAQTRAMKQ 519
I A+ G + +G A Q A +
Sbjct: 135 IA-AVKPGARLGDIGHAIQKYAEAE 158
>gnl|CDD|213531 TIGR00447, pth, peptidyl-tRNA hydrolase. The natural substrate for
this enzyme may be peptidyl-tRNAs that drop off the
ribosome during protein synthesis. Peptidyl-tRNA
hydrolase is a bacterial protein; YHR189W from
Saccharomyces cerevisiae appears to be orthologous and
likely has the same function [Protein synthesis, Other].
Length = 188
Score = 29.2 bits (66), Expect = 3.8
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 192 AGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSG---CA 248
AG +D L R L + G T + + +K I PL Y+ SG A
Sbjct: 21 AGFWVLDLLAS--RLGLSLRTEKKFFGYTERGL--LSGKKVILLKPLTYMN-LSGEAVRA 75
Query: 249 MGEFFRDNGKHALIIYDDLS 268
+ F+R L+++D+L
Sbjct: 76 LASFYRIKPAELLVVHDELD 95
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific
[General function prediction only].
Length = 830
Score = 29.4 bits (66), Expect = 6.1
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 39 ASSRAAEISSILEERILGSAPKAVAYRQMSLLLRRPPGREAYPGDVF-YLHS--RLLERS 95
A R +E I+E RI G P Q+S +L + G +AYPGD+F +L + RLLE
Sbjct: 751 AEQRLSEK--IIELRIEGKDPS-----QISRILEKRYGIQAYPGDIFTWLDTLVRLLEAI 803
Query: 96 AKMSEAHG 103
+++
Sbjct: 804 GRIARVFK 811
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide
variety of presumed DNA repair proteins.
Length = 154
Score = 28.0 bits (63), Expect = 7.9
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 176 QKRKKRRRLLKYNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAID 225
L A + LV + RG L+ G TGK+ LA+D
Sbjct: 1 AAEPSELLPSSAEDLDAPPPPLRWLVKGLLPRGGLTLLAGAPGTGKSTLALD 52
>gnl|CDD|236481 PRK09360, lamB, maltoporin; Provisional.
Length = 415
Score = 28.8 bits (65), Expect = 8.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 15 NIPSSLNQAN-WAATQIASRKFNVSA 39
+ S+NQ N W +T A R+FNV A
Sbjct: 88 MVAYSVNQQNDWESTDPALREFNVQA 113
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,943,993
Number of extensions: 2825384
Number of successful extensions: 3032
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2961
Number of HSP's successfully gapped: 259
Length of query: 539
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 437
Effective length of database: 6,413,494
Effective search space: 2802696878
Effective search space used: 2802696878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)