RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13776
(539 letters)
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 507 bits (1307), Expect = e-177
Identities = 219/336 (65%), Positives = 232/336 (69%), Gaps = 91/336 (27%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
+ GIKAVDSLVPIGRGQRELIIGDRQTGKT++AIDTIINQK
Sbjct: 146 MQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG------------- 192
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM 309
DEKKKLYCIYVAIGQKRSTVAQ+VKRLTD+ AM
Sbjct: 193 --------------------------TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM 226
Query: 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369
YTI+VSATASDAAPLQYLAPYSGC+MGE+FRDNGKHALIIYDDLSKQAVAYRQMSLLLR
Sbjct: 227 KYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 286
Query: 370 RPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
RPPGREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQAGDVSAYIPTNVISIT
Sbjct: 287 RPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISIT 346
Query: 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRV 489
DGQIFLETELFYK
Sbjct: 347 DGQIFLETELFYK----------------------------------------------- 359
Query: 490 VDALGIRPAINVGLSVSRVGSAAQTRAMKQ-TGKIR 524
GIRPAINVGLSVSRVGSAAQTRAMKQ G ++
Sbjct: 360 ----GIRPAINVGLSVSRVGSAAQTRAMKQVAGTMK 391
Score = 220 bits (563), Expect = 1e-65
Identities = 85/94 (90%), Positives = 89/94 (94%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQAGDV
Sbjct: 275 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDV 334
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
SAYIPTNVISITDGQIFLETELFYK R +IN G
Sbjct: 335 SAYIPTNVISITDGQIFLETELFYKGIRPAINVG 368
Score = 109 bits (275), Expect = 1e-25
Identities = 50/53 (94%), Positives = 53/53 (100%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KGM+LNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE+LLGRVVDALG
Sbjct: 60 KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALG 112
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 497 bits (1282), Expect = e-173
Identities = 172/336 (51%), Positives = 207/336 (61%), Gaps = 99/336 (29%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
L GIKA+DS++PIGRGQRELIIGDRQTGKTA+AIDTIINQK
Sbjct: 159 LQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK------------------ 200
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM 309
+ +YCIYVAIGQK+S +A+I+ +L GAM
Sbjct: 201 -----------------------------GQGVYCIYVAIGQKKSAIARIIDKLRQYGAM 231
Query: 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369
YT +V A+ASD A LQY+APY+GCAMGE+F +G+ AL++YDDLSK AVAYRQ+SLL+R
Sbjct: 232 EYTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLMR 291
Query: 370 RPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
RPPGREAYPGD+FYLHSRLLER+ ++++ GGGSLTALP++ETQA D+SAYIPTNVISIT
Sbjct: 292 RPPGREAYPGDIFYLHSRLLERAVRLNDKLGGGSLTALPIVETQANDISAYIPTNVISIT 351
Query: 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRV 489
DGQI+LE LFY
Sbjct: 352 DGQIYLEPGLFYA----------------------------------------------- 364
Query: 490 VDALGIRPAINVGLSVSRVGSAAQTRAMKQ-TGKIR 524
G RPAINVGLSVSRVG +AQ +AMKQ G +R
Sbjct: 365 ----GQRPAINVGLSVSRVGGSAQIKAMKQVAGMLR 396
Score = 219 bits (559), Expect = 5e-65
Identities = 70/94 (74%), Positives = 83/94 (88%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
AVAYRQ+SLL+RRPPGREAYPGD+FYLHSRLLER+ ++++ GGGSLTALP++ETQA D+
Sbjct: 280 AVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLNDKLGGGSLTALPIVETQANDI 339
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
SAYIPTNVISITDGQI+LE LFY R +IN G
Sbjct: 340 SAYIPTNVISITDGQIYLEPGLFYAGQRPAINVG 373
Score = 145 bits (367), Expect = 6e-38
Identities = 59/130 (45%), Positives = 77/130 (59%), Gaps = 26/130 (20%)
Query: 154 GQ--LIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELI 211
GQ LIIGDRQTGKTA+AIDTIINQK + + + V I GQ++
Sbjct: 175 GQRELIIGDRQTGKTAIAIDTIINQKGQG-------------VYCI--YVAI--GQKKSA 217
Query: 212 IGDRQTGKT-----ALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDD 266
I + A+ T++ + A LQY+APY+GCAMGE+F +G+ AL++YDD
Sbjct: 218 I--ARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDD 275
Query: 267 LSKQAVAYRQ 276
LSK AVAYRQ
Sbjct: 276 LSKHAVAYRQ 285
Score = 108 bits (272), Expect = 2e-25
Identities = 31/53 (58%), Positives = 41/53 (77%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
KG+A NLE DNVG+++ G + IKEG V+R I++VPVGE+LLGRVV+ LG
Sbjct: 73 KGVAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLG 125
Score = 30.0 bits (68), Expect = 2.4
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 30 IASRKFNVSASS---RAAEISSILEERILGSAPKA 61
+ S K + EI+ +LEE+I K
Sbjct: 1 MGSDKIHHHHHHLRINPGEITKVLEEKIKSFEEKI 35
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 497 bits (1281), Expect = e-173
Identities = 175/347 (50%), Positives = 208/347 (59%), Gaps = 110/347 (31%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
+ G KAVDS++PIGRGQRELIIGDRQTGKTALAID IINQ+
Sbjct: 146 VQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR------------------ 187
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM 309
+ CIYVAIGQK ST++ +V++L + GA+
Sbjct: 188 -----------------------------DSGIKCIYVAIGQKASTISNVVRKLEEHGAL 218
Query: 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369
TI+V ATAS++A LQYLAPY+GCAMGE+FRD G+ ALIIYDDLSKQAVAYRQ+SLLLR
Sbjct: 219 ANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLR 278
Query: 370 RPPGREAYPGDVFYLHSRLLERSAKMSEAH-----------GGGSLTALPVIETQAGDVS 418
RPPGREA+PGDVFYLHSRLLER+A+++ + GSLTALP+IETQAGDVS
Sbjct: 279 RPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVS 338
Query: 419 AYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVD 478
A++PTNVISITDGQIFLET LF
Sbjct: 339 AFVPTNVISITDGQIFLETNLFNA------------------------------------ 362
Query: 479 VPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAMKQ-TGKIR 524
GIRPA+N G+SVSRVG AAQT+ MK+ +G IR
Sbjct: 363 ---------------GIRPAVNPGISVSRVGGAAQTKIMKKLSGGIR 394
Score = 213 bits (544), Expect = 7e-63
Identities = 71/105 (67%), Positives = 83/105 (79%), Gaps = 11/105 (10%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAH-----------GGGSLTA 109
AVAYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER+A+++ + GSLTA
Sbjct: 267 AVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTA 326
Query: 110 LPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
LP+IETQAGDVSA++PTNVISITDGQIFLET LF R ++N G
Sbjct: 327 LPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPG 371
Score = 147 bits (374), Expect = 7e-39
Identities = 68/130 (52%), Positives = 79/130 (60%), Gaps = 26/130 (20%)
Query: 154 GQ--LIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELI 211
GQ LIIGDRQTGKTALAID IINQ+ GIK + V I GQ+
Sbjct: 162 GQRELIIGDRQTGKTALAIDAIINQRDS-------------GIKCI--YVAI--GQKAST 204
Query: 212 IGDRQTGKT-----ALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDD 266
I + ALA ++ + +A LQYLAPY+GCAMGE+FRD G+ ALIIYDD
Sbjct: 205 I--SNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDD 262
Query: 267 LSKQAVAYRQ 276
LSKQAVAYRQ
Sbjct: 263 LSKQAVAYRQ 272
Score = 109 bits (275), Expect = 8e-26
Identities = 30/53 (56%), Positives = 36/53 (67%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
+ALNLE D+VG VV G + EG VK TG I++VPVG LLGRVV+ LG
Sbjct: 60 YAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLG 112
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 496 bits (1279), Expect = e-172
Identities = 179/336 (53%), Positives = 210/336 (62%), Gaps = 99/336 (29%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
L GIKA+DS++PIGRGQRELIIGDRQTGKT +AIDTIINQK
Sbjct: 146 LQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK------------------ 187
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM 309
+ + CIYVAIGQK+STVA +V+ L A+
Sbjct: 188 -----------------------------GQDVICIYVAIGQKQSTVAGVVETLRQHDAL 218
Query: 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369
YTI+V+A+AS+ APL YLAPY+GCAMGE+F GKHAL++YDDLSKQA AYR++SLLLR
Sbjct: 219 DYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLR 278
Query: 370 RPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
RPPGREAYPGDVFYLHSRLLER+AK+S+ GGGSLTALP IETQAGDVSAYIPTNVISIT
Sbjct: 279 RPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGSLTALPFIETQAGDVSAYIPTNVISIT 338
Query: 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRV 489
DGQIFLE++LFY
Sbjct: 339 DGQIFLESDLFYS----------------------------------------------- 351
Query: 490 VDALGIRPAINVGLSVSRVGSAAQTRAMKQ-TGKIR 524
G+RPA+NVG+SVSRVG AAQ +AMK+ G +R
Sbjct: 352 ----GVRPAVNVGISVSRVGGAAQIKAMKKVAGTLR 383
Score = 219 bits (559), Expect = 4e-65
Identities = 76/94 (80%), Positives = 85/94 (90%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A AYR++SLLLRRPPGREAYPGDVFYLHSRLLER+AK+S+ GGGSLTALP IETQAGDV
Sbjct: 267 AAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGSLTALPFIETQAGDV 326
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
SAYIPTNVISITDGQIFLE++LFY R ++N G
Sbjct: 327 SAYIPTNVISITDGQIFLESDLFYSGVRPAVNVG 360
Score = 144 bits (366), Expect = 8e-38
Identities = 58/124 (46%), Positives = 78/124 (62%), Gaps = 18/124 (14%)
Query: 155 QLIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGD 214
+LIIGDRQTGKT +AIDTIINQK + + + V IG+ ++ + G
Sbjct: 165 ELIIGDRQTGKTTIAIDTIINQKGQD-------------VICI--YVAIGQ-KQSTVAGV 208
Query: 215 RQTGKTALAID--TIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 272
+T + A+D ++ + APL YLAPY+GCAMGE+F GKHAL++YDDLSKQA
Sbjct: 209 VETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAA 268
Query: 273 AYRQ 276
AYR+
Sbjct: 269 AYRE 272
Score = 107 bits (270), Expect = 3e-25
Identities = 35/53 (66%), Positives = 40/53 (75%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
GMA NLE DNVGVV+ G I+EG VKRTG I++VPVGE LLGRVV+ LG
Sbjct: 60 MGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLG 112
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 496 bits (1278), Expect = e-172
Identities = 168/336 (50%), Positives = 200/336 (59%), Gaps = 99/336 (29%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
L G+ A+D+++P+GRGQRELIIGDRQTGKTA+A DTI+NQ+
Sbjct: 147 LQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQG----------------- 189
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM 309
+ + C+YVAIGQK S+VAQ+V + GAM
Sbjct: 190 ------------------------------QNVICVYVAIGQKASSVAQVVTNFQERGAM 219
Query: 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLR 369
YTI+V+ TA A LQYLAPY+G A+ E+F +H LIIYDDLSKQA AYRQMSLLLR
Sbjct: 220 EYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLR 279
Query: 370 RPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISIT 429
RPPGREAYPGDVFYLHSRLLER+AK+S G GS+TALP++ETQAGDVSAYIPTNVISIT
Sbjct: 280 RPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDVSAYIPTNVISIT 339
Query: 430 DGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRV 489
DGQIFL +LF
Sbjct: 340 DGQIFLSADLFNA----------------------------------------------- 352
Query: 490 VDALGIRPAINVGLSVSRVGSAAQTRAMKQ-TGKIR 524
GIRPAINVG+SVSRVGSAAQ +AMK+ GK++
Sbjct: 353 ----GIRPAINVGISVSRVGSAAQIKAMKKVAGKLK 384
Score = 219 bits (559), Expect = 5e-65
Identities = 74/94 (78%), Positives = 81/94 (86%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A AYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AK+S G GS+TALP++ETQAGDV
Sbjct: 268 AQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDV 327
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCG 154
SAYIPTNVISITDGQIFL +LF R +IN G
Sbjct: 328 SAYIPTNVISITDGQIFLSADLFNAGIRPAINVG 361
Score = 145 bits (368), Expect = 4e-38
Identities = 53/127 (41%), Positives = 70/127 (55%), Gaps = 24/127 (18%)
Query: 155 QLIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGD 214
+LIIGDRQTGKTA+A DTI+NQ+ + + V V I GQ+ +
Sbjct: 166 ELIIGDRQTGKTAVATDTILNQQGQ-------------NVICV--YVAI--GQKASSV-- 206
Query: 215 RQTGKT-----ALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSK 269
Q A+ ++ + + A LQYLAPY+G A+ E+F +H LIIYDDLSK
Sbjct: 207 AQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSK 266
Query: 270 QAVAYRQ 276
QA AYRQ
Sbjct: 267 QAQAYRQ 273
Score = 108 bits (272), Expect = 2e-25
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G+ALNLE +NVGVV+ G+ +I+EG VK TG I +PV E LGRV++AL
Sbjct: 61 IGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALA 113
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 120 bits (304), Expect = 9e-30
Identities = 50/263 (19%), Positives = 96/263 (36%), Gaps = 39/263 (14%)
Query: 182 RRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYL 241
R + GI +D + + RGQ+ I +A +
Sbjct: 123 ARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIA---------------AQI 167
Query: 242 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVK 301
A + + + ++ A+G + ++ ++
Sbjct: 168 ARQATVRPDLSGEGEKEEPFAV---------------------VFAAMGITQRELSYFIQ 206
Query: 302 RLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVA 360
+GA+ +++ A D + L P + E+ ++ H L+I D++ + A
Sbjct: 207 EFERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEA 266
Query: 361 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAY 420
R++ PGR YPG ++ + + ER+ + GS+T +P++ D +
Sbjct: 267 LREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVE--GKKGSVTQIPILSMPDDDRTHP 324
Query: 421 IPTNVISITDGQIFLETELFYKG 443
IP IT+GQI L EL KG
Sbjct: 325 IPDLTGYITEGQIQLSRELHRKG 347
Score = 67.8 bits (166), Expect = 3e-12
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
+ A R++ PGR YPG ++ + + ER+ + GS+T +P++ D
Sbjct: 264 SEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVE--GKKGSVTQIPILSMPDDDR 321
Query: 121 SAYIPTNVISITDGQIFLETELFYK 145
+ IP IT+GQI L EL K
Sbjct: 322 THPIPDLTGYITEGQIQLSRELHRK 346
Score = 44.3 bits (105), Expect = 7e-05
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 12/95 (12%)
Query: 451 DNVGVVVFGNDRLIKEGD-IVKRTGAIVDVPVGEDLLGRVVDALGI----RPAINVGLSV 505
+ + VF + V + + V +++LGR + +G P I +
Sbjct: 53 EYAVIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRL 112
Query: 506 SRVGSA------AQTRAMKQTGKIRSWNGWLSLLK 534
G + QTG I + + +L++
Sbjct: 113 PITGLPLNPVARRKPEQFIQTG-ISTIDVMNTLVR 146
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 113 bits (284), Expect = 4e-27
Identities = 54/255 (21%), Positives = 92/255 (36%), Gaps = 46/255 (18%)
Query: 190 LSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAM 249
+ GI +D + RGQ+ I +A
Sbjct: 136 IQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIA------------------------LQ 171
Query: 250 GEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAM 309
+++QA + ++ A+G + +GA+
Sbjct: 172 -----------------IARQASVPGSESA--FAVVFAAMGITNEEAQYFMSDFEKTGAL 212
Query: 310 GYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLL 368
++ A D A + + P E+ ++G H L+I D++ A A RQM
Sbjct: 213 ERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAAR 272
Query: 369 RRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISI 428
PGR YPG ++ + L ER+ + GS+T +P++ D++ IP I
Sbjct: 273 NEVPGRRGYPGYMYTDLATLYERAGIVK--GAKGSVTQIPILSMPGDDITHPIPDLSGYI 330
Query: 429 TDGQIFLETELFYKG 443
T+GQI + EL KG
Sbjct: 331 TEGQIVVARELHRKG 345
Score = 66.2 bits (162), Expect = 9e-12
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A RQM PGR YPG ++ + L ER+ + GS+T +P++ D+
Sbjct: 262 AEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVK--GAKGSVTQIPILSMPGDDI 319
Query: 121 SAYIPTNVISITDGQIFLETELFYK 145
+ IP IT+GQI + EL K
Sbjct: 320 THPIPDLSGYITEGQIVVARELHRK 344
Score = 47.4 bits (113), Expect = 8e-06
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGI----RP 497
+G L+ D V V VF + + V TG + +P DLLGR++ G P
Sbjct: 50 RGQVLDSSADIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGP 109
Query: 498 AINVGLSVSRVGSA------AQTRAMKQTGKIRSWNGWLSLLK 534
I + G+A + QTG I + +G +L++
Sbjct: 110 RIVPDQLLDINGAAMNPYARLPPKDFIQTG-ISTIDGTNTLVR 151
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 85.5 bits (212), Expect = 6e-18
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 2/155 (1%)
Query: 289 IGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHAL 348
IG++ V ++ + +++++A A + L+ + E FRD G+H L
Sbjct: 191 IGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVL 250
Query: 349 IIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALP 408
+I D L++ A+A R+++L + PP + YP VF L+ER+ HGGGS+TA
Sbjct: 251 LIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGN--GIHGGGSITAFY 308
Query: 409 VIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 443
+ T+ D I + +I DG I L L G
Sbjct: 309 TVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAG 343
Score = 48.9 bits (117), Expect = 3e-06
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A+A R+++L + PP + YP VF L+ER+ HGGGS+TA + T+ D
Sbjct: 260 AMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGN--GIHGGGSITAFYTVLTEGDDQ 317
Query: 121 SAYIPTNVISITDGQIFLETEL 142
I + +I DG I L L
Sbjct: 318 QDPIADSARAILDGHIVLSRRL 339
Score = 45.8 bits (109), Expect = 3e-05
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 40/135 (29%)
Query: 180 KRRRLLKYNLLSAGIKAVDSLVPIGRGQRELI---------------------------- 211
+R + +L G++A+++L+ +GRGQR +
Sbjct: 133 QRTPIEH--VLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGL 190
Query: 212 IGDR----------QTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHAL 261
IG+R G A +I + + L+ + E FRD G+H L
Sbjct: 191 IGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVL 250
Query: 262 IIYDDLSKQAVAYRQ 276
+I D L++ A+A R+
Sbjct: 251 LIMDSLTRYAMAQRE 265
Score = 42.0 bits (99), Expect = 4e-04
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 410 IETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDI 469
IE Q G + + + V+ ++FL M L + G++ R+
Sbjct: 36 IERQDGPETKEVESEVVGFNGQRLFL--------MPLE---EVEGILP--GARVYARNGH 82
Query: 470 VKRTGAIVDVPVGEDLLGRVVDALGIRP 497
+ +P+G LLGRV+D G +P
Sbjct: 83 GDGLQSGKQLPLGPALLGRVLDGGG-KP 109
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 81.9 bits (203), Expect = 3e-17
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 5/155 (3%)
Query: 289 IGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHAL 348
IG++ V + + L S + ++V T+ A + A ++ + E+FRD GK+ L
Sbjct: 105 IGERGREVNEFLALLPQST-LSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVL 163
Query: 349 IIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALP 408
++ D +++ A A R + L P R +P VF +LLER+ GS+TA+
Sbjct: 164 LMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGP----APKGSITAIY 219
Query: 409 VIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 443
+ ++ +V+ I V SI DG I L EL +
Sbjct: 220 TVLLESDNVNDPIGDEVRSILDGHIVLTRELAEEN 254
Score = 46.5 bits (111), Expect = 1e-05
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 37/123 (30%)
Query: 190 LSAGIKAVDSLVPIGRGQRELI----------------------------IGDR------ 215
G++A+D L+ G GQR I IG+R
Sbjct: 55 FILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNE 114
Query: 216 ---QTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV 272
++ L+ ++ S A + A ++ + E+FRD GK+ L++ D +++ A
Sbjct: 115 FLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYAR 174
Query: 273 AYR 275
A R
Sbjct: 175 AAR 177
Score = 44.6 bits (106), Expect = 5e-05
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A A R + L P R +P VF +LLER+ GS+TA+ + ++ +V
Sbjct: 173 ARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGP----APKGSITAIYTVLLESDNV 228
Query: 121 SAYIPTNVISITDGQIFLETEL 142
+ I V SI DG I L EL
Sbjct: 229 NDPIGDEVRSILDGHIVLTREL 250
Score = 34.6 bits (80), Expect = 0.065
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 479 VPVGEDLLGRVVDALG 494
+ VG+ LLGR++D +G
Sbjct: 5 IRVGDALLGRLIDGIG 20
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 83.6 bits (207), Expect = 4e-17
Identities = 56/274 (20%), Positives = 101/274 (36%), Gaps = 49/274 (17%)
Query: 174 INQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSI 233
+ + R +R+L G++ +D L P+ G I G +GK+ +
Sbjct: 189 VRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSNAD 248
Query: 234 YAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKR 293
Y G GE R +E + + + +
Sbjct: 249 VVV-------YVGS--GE-----------------------RGNEMTDVLVEFPELTDPK 276
Query: 294 STVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDD 353
T M T++++ T++ + + Y G + E+FRD G ++ D
Sbjct: 277 ----------TGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADS 326
Query: 354 LSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSAKMSEAHGG-GSLTALPV 409
S+ A A R++S L P E YP YL +RL ER+ K+ G G++T +
Sbjct: 327 TSRWAEALREISSRLEEMPAEEGYPP---YLAARLAAFYERAGKVITLGGEEGAVTIVGA 383
Query: 410 IETQAGDVSAYIPTNVISITDGQIFLETELFYKG 443
+ GD+S + + + I L+ L ++
Sbjct: 384 VSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRR 417
Score = 39.7 bits (93), Expect = 0.002
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSAKMSEAHGG-GSLTALPVIETQ 116
A A R++S L P E YP YL +RL ER+ K+ G G++T + +
Sbjct: 331 AEALREISSRLEEMPAEEGYPP---YLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPP 387
Query: 117 AGDVSAYIPTNVISITDGQIFLETELFYK 145
GD+S + + + I L+ L ++
Sbjct: 388 GGDMSEPVTQSTLRIVGAFWRLDASLAFR 416
Score = 34.7 bits (80), Expect = 0.078
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 448 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDAL 493
L+ D V V+ + +K G+ V TG + V +G +L + D +
Sbjct: 42 LDGDTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGMLNGIYDGI 87
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 75.2 bits (185), Expect = 2e-14
Identities = 57/276 (20%), Positives = 101/276 (36%), Gaps = 51/276 (18%)
Query: 174 INQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSI 233
+ KR + +L L G + +D+ P +G I G +GKT +
Sbjct: 195 VRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSDAQ 254
Query: 234 YAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKR 293
Y GC GE R +E + + + +
Sbjct: 255 VVI-------YIGC--GE-----------------------RGNEMTDVLEEFPKLKDPK 282
Query: 294 STVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDD 353
T M T++++ T++ + + Y+G + E+FRD G ++ D
Sbjct: 283 ----------TGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADS 332
Query: 354 LSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSAKMSEAHGG---GSLTAL 407
S+ A A R++S L PG E YP YL S+L ER+ ++ GS++ +
Sbjct: 333 TSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVI 389
Query: 408 PVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 443
+ GD S + N + + L+ +L +
Sbjct: 390 GAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRR 425
Score = 38.6 bits (90), Expect = 0.005
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERSAKMSEAHGG---GSLTALPVIE 114
A A R++S L PG E YP YL S+L ER+ ++ GS++ + +
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVS 393
Query: 115 TQAGDVSAYIPTNVISITDGQIFLETELFYK 145
GD S + N + + L+ +L +
Sbjct: 394 PPGGDFSEPVVQNTLRVVKVFWALDADLARR 424
Score = 38.6 bits (90), Expect = 0.005
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 448 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGIRP 497
LE D + V+ ++ G+ V TGA + V +G LL + D + RP
Sbjct: 43 LEGDKAVIQVYEETAGVRPGEPVVGTGASLSVELGPRLLTSIYDGIQ-RP 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.6 bits (175), Expect = 4e-13
Identities = 91/569 (15%), Positives = 162/569 (28%), Gaps = 204/569 (35%)
Query: 8 LAAALAKNIPSSLNQAN------WAATQIASRKFNVSASS---RAAEISSI--------- 49
LAA L + ++L + A +A R F+ ++S RA +
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 50 ------LEE-RILGSAPKA-------VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERS 95
EE R L + +S L+R E + L S
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 96 AKMSEAHGGGSLTALPVIE-TQAGDVSAYIPT-NVISITDGQIFLETELFYKVDRGSINC 153
+ + + P+I Q + Y+ T ++ T G+ +G+
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQL---AHYVVTAKLLGFTPGE-------LRSYLKGATGH 273
Query: 154 GQLIIGDRQTGKTALAI---DTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIG-RGQRE 209
Q ++ TA+AI D+ + + KA+ L IG R
Sbjct: 274 SQGLV-------TAVAIAETDS-------------WESFFVSVRKAITVLFFIGVRCYE- 312
Query: 210 LIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGK----HALIIYD 265
A P L P ++ E +N + L I
Sbjct: 313 -------------------------AYPNTSLPP----SILEDSLENNEGVPSPMLSI-S 342
Query: 266 DLSKQAV--------AYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSA 317
+L+++ V ++ K+ + ++ L + ++VS
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQ----VEIS--------------LVNGAKN---LVVSG 381
Query: 318 TASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 377
L L R K D S+ + + + R+ +
Sbjct: 382 PPQS---LYGLNLT--------LR---KAKAPSGLDQSR--IPFSE-----RKLKFSNRF 420
Query: 378 -----PGDVFYLHSRLLERSAKMSEAH--------GGGSLTALPVIETQAG----DVSAY 420
P F HS LL ++ + + +PV +T G +S
Sbjct: 421 LPVASP---F--HSHLLVPASDLINKDLVKNNVSFNAKDI-QIPVYDTFDGSDLRVLSGS 474
Query: 421 IPTNVI-SITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKR----TGA 475
I ++ I + ET + + ++ FG G + R TG
Sbjct: 475 ISERIVDCIIRLPVKWET-------TTQFKATH--ILDFGPGGASGLGVLTHRNKDGTGV 525
Query: 476 IVDVPVGEDLLGRVVDA--LGIRPAINVG 502
RV+ A L I P + G
Sbjct: 526 ------------RVIVAGTLDINPDDDYG 542
Score = 50.0 bits (119), Expect = 2e-06
Identities = 75/441 (17%), Positives = 130/441 (29%), Gaps = 153/441 (34%)
Query: 214 DRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAV- 272
++ T + +I K+ A + P+ + FR G+ + A+
Sbjct: 109 LQENDTTLVKTKELI--KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV------AIF 160
Query: 273 -------AYRQDEKKKLYCIY---VA--IGQKRSTVAQIVKRLTDSGAM---GYTIIVSA 317
Y +E + LY Y V I T++++++ D+ + G I+
Sbjct: 161 GGQGNTDDYF-EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 318 TASDAAP-LQYL--APYS-------------------GCAMGEFFRDNGKHALIIYDDL- 354
P YL P S G GE R K A L
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE-LRSYLKGATGHSQGLV 278
Query: 355 SKQAVA--------YRQMSLLLR-------RPPGREAYPGDVFYLHSRLLERSAKMSEAH 399
+ A+A + + + R EAYP L +LE S +
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVR--CYEAYP--NTSLPPSILED----SLEN 330
Query: 400 GGG------SLTALP--VIETQAGDVSAYIPTN---VISITDG-QIFLET----ELFYKG 443
G S++ L ++ ++++P IS+ +G + + + L+ G
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY--G 388
Query: 444 MALNLE----PDN-------------VGVVVF--------------GNDRLIKE--GDIV 470
+ L L P F +D + K+ + V
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 471 KRTGAIVDVPV-----GEDL-------LGRVVDALGIRP-----AINVGLS--------- 504
+ +PV G DL R+VD + P +
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 505 VSRVGSAAQTRAMKQ-TGKIR 524
S +G T K TG +R
Sbjct: 509 ASGLGVL--THRNKDGTG-VR 526
Score = 48.5 bits (115), Expect = 6e-06
Identities = 53/314 (16%), Positives = 96/314 (30%), Gaps = 115/314 (36%)
Query: 249 MGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIV----KRLT 304
MG K A +++ +A + +D Y ++ IV LT
Sbjct: 1631 MGMDLYKTSKAAQDVWN----RADNHFKDT----YGF---------SILDIVINNPVNLT 1673
Query: 305 --DSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGE-FFRD-NGKHALIIY----DDLSK 356
G G I + + + + G E F++ N + LS
Sbjct: 1674 IHFGGEKGKRI-----RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 357 ----Q----AVAYRQMSLLLRRPPGREA--YPGDVFYL-HSRLL-ERSAKMSEAHGGGSL 404
Q + L + P D + HS L E +A L
Sbjct: 1729 TQFTQPALTLMEKAAFEDL------KSKGLIPADATFAGHS--LGEYAA----------L 1770
Query: 405 TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGMALN--LEPDNVG-------- 454
+L A V+SI + + +FY+GM + + D +G
Sbjct: 1771 ASL------AD---------VMSIESL-VEV---VFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 455 -----VVVFGNDRLIKE--GDIVKRTGAIVDV-----P----V--GE----DLLGRVVDA 492
V + ++ + KRTG +V++ V G+ D + V++
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 493 LGIRPAINVGLSVS 506
+ ++ + L S
Sbjct: 1872 IKLQKIDIIELQKS 1885
Score = 29.2 bits (65), Expect = 5.0
Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 29/151 (19%)
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
G + Y + R+ + G S+ D+ P N+ G+
Sbjct: 1632 GMDLY--KTSKAAQDVWNRADNHFKDTYGFSIL----------DIVINNPVNLTIHFGGE 1679
Query: 433 IFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA 492
Y A+ E G + +++ KE + T + LL
Sbjct: 1680 KGKRIRENY--SAMIFETIVDGKLKT--EKIFKEINE-HSTSYTFRSE--KGLLSATQFT 1732
Query: 493 LGIRPAINVGLSVSRVGSAAQTRAMKQTGKI 523
+PA+ + + A +K G I
Sbjct: 1733 ---QPAL---TLMEK----AAFEDLKSKGLI 1753
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 4e-10
Identities = 65/453 (14%), Positives = 141/453 (31%), Gaps = 135/453 (29%)
Query: 44 AEISSILEERILGSAPKAVAYRQMSLLLRRPP-GREAYPGDVF-----YLHSRLLERSAK 97
EI I+ + + R LL + + + +V +L S + +
Sbjct: 49 EEIDHIIMSK----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 98 MSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKVDRG-------- 149
P + T+ YI D Q+F + Y V R
Sbjct: 105 -------------PSMMTRM-----YIEQRDRLYNDNQVFAK----YNVSRLQPYLKLRQ 142
Query: 150 ---SINCGQLII--GDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIG 204
+ + ++ G +GKT +A+D ++ K + + + I ++ +
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK--------MDFKIFWLN----LK 190
Query: 205 RGQR-ELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNG-KHALI 262
E ++ Q ID +S +++ ++ + + ++ L+
Sbjct: 191 NCNSPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 263 IYDDL-SKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIV-----KRLTDSGAMGYTIIVS 316
+ ++ + +A L C +I+ K++TD + T +S
Sbjct: 249 VLLNVQNAKAW-----NAFNLSC-------------KILLTTRFKQVTDFLSAATTTHIS 290
Query: 317 -----ATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAY--RQMSL--- 366
T + L Y C DL ++ + R++S+
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRP---------------QDLPREVLTTNPRRLSIIAE 335
Query: 367 LLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAG-------DVSA 419
+R + H ++ + E+ SL L E + SA
Sbjct: 336 SIRDGLATWDN-----WKHVN-CDKLTTIIES----SLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 420 YIPTNVISI-------TDGQIFLETELFYKGMA 445
+IPT ++S+ +D + + +L +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVN-KLHKYSLV 417
Score = 56.4 bits (135), Expect = 2e-08
Identities = 66/513 (12%), Positives = 137/513 (26%), Gaps = 138/513 (26%)
Query: 24 NWAATQIASRKFNVSASSRAAEISSILEERILGSAPKAVAYRQMSLLLRRPPGREAYPGD 83
+ + I + + S + +R+ Y + R
Sbjct: 92 KFLMSPIKTEQ---RQPSMMTRMYIEQRDRLYNDNQVFAKYN-----VSRLQ-------P 136
Query: 84 VFYLHSRLLE-RSAKMSEAHG-GGS-LTALPVIET-QAGDVSAYIPTNVISITDGQIFLE 139
L LLE R AK G GS T + ++ + V + + +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 140 TELFYKVDRGSINCGQLIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDS 199
+ + + Q+ + I I+ + + RRLLK +
Sbjct: 196 ETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY------ENC 246
Query: 200 LVPIGRGQRELIIGDRQTGKTALAID----TII--NQKSI--YAAPLQYLAPYSGCAMGE 251
L L++ + Q K A + ++ K + + +
Sbjct: 247 L---------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 252 FFRDNGKHAL-----IIYDDLSKQAV-----------AYRQDEKKKL-YCIYVAIGQKRS 294
D K L DL ++ + +D +V + +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 295 TVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGK---HAL-II 350
+ + L P +Y + ++ F + L +I
Sbjct: 358 IIESSLNVLE-------------------PAEYRKMFDRLSV---FPPSAHIPTILLSLI 395
Query: 351 YDDLSKQAV-----AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLT 405
+ D+ K V + SL+ ++P + S LE K+
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKES------TISIPSIYLELKVKLEN------EY 443
Query: 406 AL--PVIE----TQAGDVSAYIPTNVISITDGQIFL-------------ETELFYKGMAL 446
AL +++ + D IP + D + LF + L
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYL----DQYFYSHIGHHLKNIEHPERMTLFRM-VFL 498
Query: 447 NLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDV 479
+ F ++ + +G+I++
Sbjct: 499 DFR--------FLEQKIRHDSTAWNASGSILNT 523
Score = 54.5 bits (130), Expect = 7e-08
Identities = 77/547 (14%), Positives = 151/547 (27%), Gaps = 172/547 (31%)
Query: 8 LAAALAK--NIPSS-----LNQAN--WAATQIASRKFNVSASSRAAEISSILEERILGSA 58
L + + PS + Q + + Q+ + K+NVS ++ L E L A
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLE--LRPA 150
Query: 59 PKAVAYRQM-----SLL----LRRPPGREAYPGDVFYLHSR-------LLERSAKMSEAH 102
+ + + + + +F+L+ + +LE K+
Sbjct: 151 KNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL---- 205
Query: 103 GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYK--------------VDR 148
L + T D S+ I + SI L Y+ +
Sbjct: 206 ----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 149 GSINCGQLIIGDRQTGKTALAIDTIINQKRKKRRR---------------LLKYNLLSAG 193
+++C L+ T + D + LLKY
Sbjct: 262 FNLSCKILLT----TRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKY----LD 312
Query: 194 IKAVD------SLVP-----IGRGQRELIIGDR-------QTGKTALAIDTIINQKSIYA 235
+ D + P I R+ + K I++ +N
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGL--ATWDNWKHVNCDKLTTIIESSLNVLE--- 367
Query: 236 APLQYLAPYSGCAMGEFFRDNGK---HALIIY-------------DDLSKQAVAYRQDEK 279
P +Y + ++ F + L + + L K ++ +Q ++
Sbjct: 368 -PAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 280 KK--LYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPL---QYLAPYSG- 333
+ IY+ + K + + + D Y I + + D P QY + G
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDH----YNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 334 ----CAMGE---FFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHS 386
E FR ++ D R + +R G +
Sbjct: 480 HLKNIEHPERMTLFRM-------VFLDF-------RFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 387 RLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIP-----------TNVISIT----DG 431
+L + + P E + ++P T+++ I D
Sbjct: 526 QLKFYKPYICDND--------PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 432 QIFLETE 438
IF E
Sbjct: 578 AIFEEAH 584
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 35.3 bits (82), Expect = 0.037
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 16/71 (22%)
Query: 459 GNDRLIKEGDIVK-RTGAIVD---------VPVG---EDLLGRVVDAL--GIRPAINVGL 503
G+ ++KEGD +K G +D V VG ++L+ +AL I G+
Sbjct: 68 GDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEAAKEALNAAIS-VARAGV 126
Query: 504 SVSRVGSAAQT 514
+ +G A +
Sbjct: 127 EIKELGKAIEN 137
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
capture mechanism, ATP-binding, hydrolase,
nucleotide-binding, RN binding; 2.35A {Thermotoga
maritima}
Length = 427
Score = 35.7 bits (83), Expect = 0.038
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 197 VDSLVPIGRGQRELIIGDRQTGKTAL 222
+D PIG+GQR +I+ + GKT +
Sbjct: 166 IDLFAPIGKGQRGMIVAPPKAGKTTI 191
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold ATP-binding,
hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 35.7 bits (83), Expect = 0.039
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 197 VDSLVPIGRGQRELIIGDRQTGKTAL 222
+D PIGRGQR LI+ + GKT L
Sbjct: 165 LDLASPIGRGQRGLIVAPPKAGKTML 190
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 35.4 bits (82), Expect = 0.045
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 467 GDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G V TGA + VPVG+ LGRV + LG
Sbjct: 73 GMEVIDTGAPISVPVGQVTLGRVFNVLG 100
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 35.0 bits (81), Expect = 0.064
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 467 GDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G V TGA + VPVG LGR+ + LG
Sbjct: 88 GMEVIDTGAPLSVPVGGPTLGRIFNVLG 115
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.075
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 15/39 (38%)
Query: 291 QKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLA 329
+K++ +K+L S + Y A D+AP LA
Sbjct: 18 EKQA-----LKKLQASLKL-Y-------ADDSAPA--LA 41
Score = 29.1 bits (64), Expect = 2.2
Identities = 15/55 (27%), Positives = 17/55 (30%), Gaps = 31/55 (56%)
Query: 176 QKRKKRRRLLKYNLLSAGIK--AVDSLVPIGRGQRELIIGDRQTGKTALAID-TI 227
Q KK L A +K A DS P ALAI T+
Sbjct: 20 QALKK---------LQASLKLYADDS-AP------------------ALAIKATM 46
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 34.5 bits (80), Expect = 0.082
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 467 GDIVKRTGAIVDVPVGEDLLGRVVDALG 494
G V +GA + +PVG + LGR+++ +G
Sbjct: 76 GQKVLDSGAPIRIPVGPETLGRIMNVIG 103
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.9 bits (80), Expect = 0.092
Identities = 30/184 (16%), Positives = 51/184 (27%), Gaps = 39/184 (21%)
Query: 307 GAMGYTIIV-SATASDAAPLQYLAPYSG--CAMGEFFRDNGKHALIIYDDLSKQAVAYRQ 363
G Y I+ +ATA+D AP G E K+A + + YR+
Sbjct: 1198 GVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSS-VKYASPNLN------MKYRK 1250
Query: 364 MSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHG----GGSLTALPVIETQAGDVSA 419
L+ R ++ ++ L + T+ A
Sbjct: 1251 RQLVTREAQIKDWVENELEALK------------LEAEEIPSEDQNEFLLERTREIHNEA 1298
Query: 420 YIPTNVISITDGQIFLETELFYKGMA-----LNLEPDNVGVVVF------GNDRLIKEGD 468
G F + + + L D++GV F ND+ E
Sbjct: 1299 ESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKN--ESA 1356
Query: 469 IVKR 472
+
Sbjct: 1357 TINE 1360
Score = 28.3 bits (63), Expect = 7.8
Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 21/63 (33%)
Query: 62 VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVS 121
+ YR+ L+ R ++ ++ L +P + D +
Sbjct: 1246 MKYRKRQLVTREAQIKDWVENELEALK------------LEA----EEIP-----SEDQN 1284
Query: 122 AYI 124
++
Sbjct: 1285 EFL 1287
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH
domain-like fold, structural genomics, joint CENT
structural genomics; HET: MSE; 1.90A {Syntrophus
aciditrophicus}
Length = 191
Score = 32.7 bits (74), Expect = 0.16
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 12/80 (15%)
Query: 284 CIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSAT-ASDAAPLQYLAPYSGCAMGE---F 339
V IG + + + G + I + T DA +Q L + C G
Sbjct: 27 APGVLIGGF---MVDLAVKNLPEGILYDAICETRTCLPDA--VQLL---TPCTFGNGWLT 78
Query: 340 FRDNGKHALIIYDDLSKQAV 359
G A+ +YD + + V
Sbjct: 79 VLPMGLFAVSLYDKFTGEGV 98
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 33.7 bits (77), Expect = 0.16
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 459 GNDRLIKEGDIVK-RTGAIVD---------VPVGE---DLLGRVVDAL--GIRPAINVGL 503
G+ +++ DI K G + V LL V DA GI+ + +
Sbjct: 237 GDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIK-CAGIDV 295
Query: 504 SVSRVGSAAQT 514
+ VG A Q
Sbjct: 296 RLCDVGEAIQE 306
>2glz_A Similar to formylmethanofuran dehydrogenase subun; structural
genomics, joint center for structural genomics; HET:
MSE; 1.45A {Desulfitobacterium hafniense} SCOP: d.81.3.1
Length = 153
Score = 30.8 bits (69), Expect = 0.53
Identities = 8/79 (10%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 284 CIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGE---FF 340
C +A+G + + +AQ + + + + +Q L + +G
Sbjct: 20 CPDIALGYRIAQLAQREMGIRPAPDSECLVKAYTQSCALDAIQVL---NKATIGRHALII 76
Query: 341 RDNGKHALIIYDDLSKQAV 359
+ ++ + ++
Sbjct: 77 EETHRYMYQFHFTGTQDIH 95
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO
structural genomics, PSI, protein structure initiative,
secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1
c.65.1.1
Length = 260
Score = 31.1 bits (71), Expect = 0.74
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 199 SLVPIGRG----QRELIIGDRQTGKTALAI----DT--IINQKSI 233
+ +P GRG Q + G ++T +A+ + DT I ++ +
Sbjct: 106 TDLPFGRGGSPLQNLIERGIKKTKISAIKVDGGIDTGDIFFKRDL 150
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 30.6 bits (70), Expect = 1.0
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 21/82 (25%)
Query: 455 VVVFG--NDRLIKEGDIVK-RTGAIVD---------VPVGE--DLLGRVVDA------LG 494
+ G +++K+GD++K + VGE + R+++ LG
Sbjct: 74 EICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEVTKKALYLG 133
Query: 495 IRPAINVGLSVSRVGSAAQTRA 516
I A VG + +G A QT
Sbjct: 134 IEQAQ-VGNRIGDIGHAIQTYV 154
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 30.7 bits (70), Expect = 1.1
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 482 GEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAMKQTGKIRS 525
+D+L V +AL ++ + VG SV ++++
Sbjct: 77 AQDVLD-VCEALDLKETVFVGHSVG--ALIGMLASIRRPELFSH 117
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 30.2 bits (69), Expect = 1.5
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 22/83 (26%)
Query: 455 VVVFG---NDRLIKEGDIVK-RTGAIVD---------VPVGE--DLLGRVVDA------L 493
VV G +++ KEGDIV GA+ VGE + +V
Sbjct: 86 EVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVRVTREVLEK 145
Query: 494 GIRPAINVGLSVSRVGSAAQTRA 516
I+ G+ + V Q
Sbjct: 146 AIKMIK-PGIRLGDVSHCIQETV 167
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 29.9 bits (68), Expect = 2.0
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 22/83 (26%)
Query: 455 VVVFG---NDRLIKEGDIVK-RTGAIVD---------VPVGE--DLLGRVVDA------L 493
VV G ++ +GD+V GAI+D VG + +A
Sbjct: 104 QVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSEATRLSMEA 163
Query: 494 GIRPAINVGLSVSRVGSAAQTRA 516
GI I G ++ V A +
Sbjct: 164 GIAAMI-PGNRLTDVSHAIELGT 185
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 29.1 bits (66), Expect = 3.5
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 482 GEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAMKQTGKIRS 525
+D+ ++ AL + +G SVS A + +I
Sbjct: 85 AKDVE-EILVALDLVNVSIIGHSVS--SIIAGIASTHVGDRISD 125
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 28.9 bits (65), Expect = 3.9
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 482 GEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAMKQTGKIRS 525
D +++ L I PA VG+S+ AQ + + S
Sbjct: 97 VADTAA-LIETLDIAPARVVGVSMG--AFIAQELMVVAPELVSS 137
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 28.7 bits (63), Expect = 5.0
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 210 LIIGDRQTGKTALAIDTIINQKS-IYAAPLQYLA 242
G +GKT AI + KS +Y PL+ LA
Sbjct: 159 FHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLA 192
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 28.2 bits (64), Expect = 6.6
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 22/83 (26%)
Query: 455 VVVFG--NDRLIKEGDIVK-RTGAIVD---------VPVGE---DLLGRVVDA------L 493
V G + R+I+EGD+V A+ + VGE + +V D
Sbjct: 73 EVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFEN 132
Query: 494 GIRPAINVGLSVSRVGSAAQTRA 516
I + G +S +G A A
Sbjct: 133 AIA-KVKPGTKLSNIGKAVHNTA 154
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 28.1 bits (62), Expect = 7.1
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 203 IGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFR 254
+ L++G R+ GK++L + + I + A E +
Sbjct: 28 LENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIK 79
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,309,275
Number of extensions: 532201
Number of successful extensions: 1480
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1455
Number of HSP's successfully gapped: 124
Length of query: 539
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 441
Effective length of database: 3,965,535
Effective search space: 1748800935
Effective search space used: 1748800935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.1 bits)