RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13776
(539 letters)
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 282 bits (722), Expect = 2e-92
Identities = 213/331 (64%), Positives = 225/331 (67%), Gaps = 90/331 (27%)
Query: 183 RLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLA 242
R+ + GIKAVDSLVPIGRGQRELIIGDRQTGKT++AIDTIINQK
Sbjct: 45 RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG------ 98
Query: 243 PYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKR 302
DEKKKLYCIYVAIGQKRSTVAQ+VKR
Sbjct: 99 ---------------------------------TDEKKKLYCIYVAIGQKRSTVAQLVKR 125
Query: 303 LTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYR 362
LTD+ AM YTI+VSATASDAAPLQYLAPYSGC+MGE+FRDNGKHALIIYDDLSKQAVAYR
Sbjct: 126 LTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYR 185
Query: 363 QMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIP 422
QMSLLLRRPPGREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQAGDVSAYIP
Sbjct: 186 QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIP 245
Query: 423 TNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVG 482
TNVISITDGQIFLETELFYK
Sbjct: 246 TNVISITDGQIFLETELFYK---------------------------------------- 265
Query: 483 EDLLGRVVDALGIRPAINVGLSVSRVGSAAQ 513
GIRPAINVGLSVSRVGSAAQ
Sbjct: 266 -----------GIRPAINVGLSVSRVGSAAQ 285
Score = 124 bits (314), Expect = 8e-33
Identities = 84/93 (90%), Positives = 89/93 (95%)
Query: 60 KAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGD 119
+AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AKM++A GGGSLTALPVIETQAGD
Sbjct: 180 QAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGD 239
Query: 120 VSAYIPTNVISITDGQIFLETELFYKVDRGSIN 152
VSAYIPTNVISITDGQIFLETELFYK R +IN
Sbjct: 240 VSAYIPTNVISITDGQIFLETELFYKGIRPAIN 272
Score = 40.6 bits (95), Expect = 3e-04
Identities = 17/18 (94%), Positives = 18/18 (100%)
Query: 477 VDVPVGEDLLGRVVDALG 494
VDVPVGE+LLGRVVDALG
Sbjct: 1 VDVPVGEELLGRVVDALG 18
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 236 bits (603), Expect = 9e-75
Identities = 55/334 (16%), Positives = 98/334 (29%), Gaps = 108/334 (32%)
Query: 182 RRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYL 241
++ +L GIK VD L P +G + + G GKT L ++ I N +
Sbjct: 44 EMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG----- 98
Query: 242 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVK 301
Y ++ +G++ +
Sbjct: 99 -----------------------------------------YSVFAGVGERTREGNDLYH 117
Query: 302 RLTDSG------AMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN-GKHALIIYDDL 354
+ +SG A +V ++ + +G + E+FRD G+ L+ D++
Sbjct: 118 EMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 177
Query: 355 SKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQA 414
+ A ++S LL R P Y + + ER GS+T++ I A
Sbjct: 178 FRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT----KKGSITSVQAIYVPA 233
Query: 415 GDVSAYIPTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTG 474
D++ P + D L +
Sbjct: 234 DDLTDPAPATTFAHLDATTVLSRAIAEL-------------------------------- 261
Query: 475 AIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRV 508
GI PA++ S SR+
Sbjct: 262 -------------------GIYPAVDPLDSTSRI 276
Score = 109 bits (275), Expect = 1e-27
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A ++S LL R P Y + + ER GS+T++ I A D+
Sbjct: 181 TQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT----KKGSITSVQAIYVPADDL 236
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSIN 152
+ P + D L + +++
Sbjct: 237 TDPAPATTFAHLDATTVLSRAIAELGIYPAVD 268
Score = 37.8 bits (88), Expect = 0.002
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 479 VPVGEDLLGRVVDALG 494
+PVG + LGR+++ +G
Sbjct: 3 IPVGPETLGRIMNVIG 18
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 229 bits (584), Expect = 5e-72
Identities = 165/332 (49%), Positives = 193/332 (58%), Gaps = 98/332 (29%)
Query: 182 RRLLKYNLLSAGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYL 241
R Y L G+ A+D+++P+GRGQRELIIGDRQTGKTA+A DTI+NQ+
Sbjct: 43 SRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQG--------- 93
Query: 242 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVK 301
+ + C+YVAIGQK S+VAQ+V
Sbjct: 94 --------------------------------------QNVICVYVAIGQKASSVAQVVT 115
Query: 302 RLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAY 361
+ GAM YTI+V+ TA A LQYLAPY+G A+ E+F +H LIIYDDLSKQA AY
Sbjct: 116 NFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAY 175
Query: 362 RQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYI 421
RQMSLLLRRPPGREAYPGDVFYLHSRLLER+AK+S G GS+TALP++ETQAGDVSAYI
Sbjct: 176 RQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDVSAYI 235
Query: 422 PTNVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPV 481
PTNVISITDGQIFL +LF
Sbjct: 236 PTNVISITDGQIFLSADLFNA--------------------------------------- 256
Query: 482 GEDLLGRVVDALGIRPAINVGLSVSRVGSAAQ 513
GIRPAINVG+SVSRVGSAAQ
Sbjct: 257 ------------GIRPAINVGISVSRVGSAAQ 276
Score = 121 bits (304), Expect = 1e-31
Identities = 73/92 (79%), Positives = 80/92 (86%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A AYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AK+S G GS+TALP++ETQAGDV
Sbjct: 172 AQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDV 231
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSIN 152
SAYIPTNVISITDGQIFL +LF R +IN
Sbjct: 232 SAYIPTNVISITDGQIFLSADLFNAGIRPAIN 263
Score = 39.1 bits (91), Expect = 9e-04
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 479 VPVGEDLLGRVVDALG 494
+PV E LGRV++AL
Sbjct: 2 IPVSEAYLGRVINALA 17
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 140 bits (355), Expect = 1e-38
Identities = 33/252 (13%), Positives = 72/252 (28%), Gaps = 55/252 (21%)
Query: 193 GIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEF 252
+ +D PIGRGQR LI+ + GKT L + +
Sbjct: 30 TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA--------------------- 68
Query: 253 FRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYT 312
+ + I ++ V ++ + +
Sbjct: 69 ------------------------YNHPDCVLMVLLIDERPEEVTEMQRLV-------KG 97
Query: 313 IIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 372
+V++T + A + ++ K +I+ D +++ A AY + +
Sbjct: 98 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 157
Query: 373 GREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDVSAYIPTNVISITDGQ 432
+ + R A+ E GG + + I + +
Sbjct: 158 -TGGVDANALHRPKRFFGA-ARNVE-EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 214
Query: 433 IFLETELFYKGM 444
+ L ++ K +
Sbjct: 215 LHLSRKIAEKRV 226
Score = 65.0 bits (158), Expect = 3e-12
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 8/125 (6%)
Query: 61 AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMSEAHGGGSLTALPVIETQAGDV 120
A AY + + + + R A+ E GG + +
Sbjct: 143 ARAYNTVVPASGKVL-TGGVDANALHRPKRFFGA-ARNVE-EGGSLTIIATALIDTGSKM 199
Query: 121 SAYIPTNVISITDGQIFLETELFYKVDRGSINCGQLIIGDRQTGKTALAIDTIINQKRKK 180
I + ++ L ++ K +I+ T K L QK
Sbjct: 200 DEVIYEEFKGTGNMELHLSRKIAEKRVFPAID-----YNRSGTRKEELLTTQEELQKMWI 254
Query: 181 RRRLL 185
R+++
Sbjct: 255 LRKII 259
Score = 52.7 bits (126), Expect = 4e-08
Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 21/128 (16%)
Query: 151 INCGQ--LIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLVPIGRGQR 208
I GQ LI+ + GKT L + + V ++ I
Sbjct: 40 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN-------------HPDCVLMVLLIDERPE 86
Query: 209 ELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLS 268
E + + ++ A + ++ K +I+ D ++
Sbjct: 87 E----VTEMQRLVKGE--VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 140
Query: 269 KQAVAYRQ 276
+ A AY
Sbjct: 141 RLARAYNT 148
>d1skyb2 b.49.1.1 (B:21-95) F1 ATP synthase alpha subunit, domain 1
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 75
Score = 59.7 bits (145), Expect = 4e-12
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 442 KGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIV 477
GMALNLE +NVG+V+ G IKEGD V+RTG I+
Sbjct: 40 MGMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIM 75
>d2jdia2 b.49.1.1 (A:24-94) F1 ATP synthase alpha subunit, domain 1
{Cow (Bos taurus) [TaxId: 9913]}
Length = 71
Score = 58.9 bits (143), Expect = 5e-12
Identities = 39/64 (60%), Positives = 43/64 (67%), Gaps = 12/64 (18%)
Query: 425 VISITDGQI------------FLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKR 472
V+SI DG +E KGM+LNLEPDNVGVVVFGND+LIKEGDIVKR
Sbjct: 8 VLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKR 67
Query: 473 TGAI 476
TGAI
Sbjct: 68 TGAI 71
>d1fx0a2 b.49.1.1 (A:25-96) F1 ATP synthase alpha subunit, domain 1
{Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Length = 72
Score = 56.6 bits (137), Expect = 4e-11
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 443 GMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAI 476
G+ALNLE +NVGVV+ G+ +I+EG VK TG I
Sbjct: 38 GIALNLESNNVGVVLMGDGLMIQEGSSVKATGRI 71
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 32.4 bits (72), Expect = 0.12
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 179 KKRRRLLKYNLLSAGIKAVDSLVP--IGRGQRELIIGDRQTGKTALAIDTIINQ 230
+R L+ L+ G K +D+L+ + G + G+ +TGK+ L +
Sbjct: 8 MRRSELIC---LTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTC 58
Score = 26.2 bits (56), Expect = 8.6
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 127 NVISITDGQIFLETELFYKVDRGSINCGQLIIGDRQTGKTALAIDTIINQKRKKR 181
+I +T G L+T L V+ GSI + G+ +TGK+ L + +
Sbjct: 12 ELICLTTGSKNLDTLLGGGVETGSIT---ELFGEFRTGKSQLCHTLAVTCQIPLD 63
>d2glza1 d.81.3.1 (A:3-151) FwdE-like protein DSY1837 (Dhaf_2201)
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 149
Score = 31.0 bits (70), Expect = 0.16
Identities = 9/81 (11%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 284 CIYVAIGQKRSTVAQIVKRLTDSGAMG--YTIIVSATASDAAPLQYLAPYSGCAMGE--- 338
C +A+G + + +AQ + + A + + +Q L + +G
Sbjct: 17 CPDIALGYRIAQLAQ--REMGIRPAPDSECLVKAYTQSCALDAIQVL---NKATIGRHAL 71
Query: 339 FFRDNGKHALIIYDDLSKQAV 359
+ ++ + ++
Sbjct: 72 IIEETHRYMYQFHFTGTQDIH 92
Score = 26.3 bits (58), Expect = 5.7
Identities = 3/38 (7%), Positives = 12/38 (31%), Gaps = 6/38 (15%)
Query: 238 LQYLAPYSGCAMGE---FFRDNGKHALIIYDDLSKQAV 272
+Q L + +G + ++ + ++
Sbjct: 58 IQVL---NKATIGRHALIIEETHRYMYQFHFTGTQDIH 92
>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase,
C-terminal domain {Pseudomonas cepacia, db01 [TaxId:
292]}
Length = 98
Score = 29.5 bits (66), Expect = 0.28
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 470 VKRTGAIVDVPVGEDLLGRVVDALGIRPAINVGLSVSRVGSAAQTRAMKQTGKIRSWNGW 529
+ R+G ++P +L + L + V S G+ + +G+ +
Sbjct: 19 LSRSGTSFEIPANRSIL----EVL-RDANVRV-PSSCESGTCGSCKTALCSGEADHRDMV 72
Query: 530 LS 531
L
Sbjct: 73 LR 74
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 29.7 bits (65), Expect = 0.77
Identities = 31/210 (14%), Positives = 54/210 (25%), Gaps = 18/210 (8%)
Query: 156 LIIGDRQTGKTALAIDTIINQKRKKRRRLLKYNLLSAGIKAVDSLV---------PIGRG 206
L++G R+TGK+++ I IN+ L + + + R
Sbjct: 33 LVLGLRRTGKSSI-IKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRL 91
Query: 207 QRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDD 266
L G + + N L A + A +
Sbjct: 92 PSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 151
Query: 267 LSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDAAPLQ 326
+ L I + + R+ D + + S
Sbjct: 152 RGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTV-------- 203
Query: 327 YLAPYSGCAMGEFFRDNGKHALIIYDDLSK 356
L P+S EF R + A I + D
Sbjct: 204 ELKPFSREEAIEFLRRGFQEADIDFKDYEV 233
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 28.9 bits (64), Expect = 0.83
Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 12/133 (9%)
Query: 205 RGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCAMGEFFRDNGKHALIIY 264
RGQ ++I+G +GK+ + + + L F + +
Sbjct: 1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALP 60
Query: 265 DDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYTIIVSATASDA-- 322
L + E + I + GQ + + + + + G T+IV+A
Sbjct: 61 ACLLR----DVAQEALGVAVIGIDEGQFFPDIVEFCEAMAN---AGKTVIVAALDGTFQR 113
Query: 323 ---APLQYLAPYS 332
+ L P +
Sbjct: 114 KPFGAILNLVPLA 126
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 29.7 bits (65), Expect = 0.92
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 424 NVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIV 477
G++ + L+P G +G L ++G++ ++ I
Sbjct: 254 GEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDLARKGELGEKILFIH 307
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 29.0 bits (63), Expect = 1.1
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 9/26 (34%)
Query: 143 FYKVDRGSINCGQLIIGDRQTGKTAL 168
+Y+V ++IG++ GK+ L
Sbjct: 3 YYRV---------VLIGEQGVGKSTL 19
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 29.4 bits (64), Expect = 1.1
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 190 LSAGIKAVDSLVPIG--RGQRELIIGDRQTGKTALAIDTIIN 229
++ G K +D L+ G G + G+ +TGKT + +
Sbjct: 5 ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 46
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 29.3 bits (64), Expect = 1.1
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 5/78 (6%)
Query: 179 KKRRRLLKYNLLSAGIKAVDSLV--PIGRGQRELIIGDRQTGKTALAIDTIINQKSIYAA 236
K+R + K LS +DS++ + G +GKT + + +N ++
Sbjct: 8 KQRSTVWK---LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFL 64
Query: 237 PLQYLAPYSGCAMGEFFR 254
A G
Sbjct: 65 FYDEEAVSKGEVAQPKAV 82
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.1 bits (61), Expect = 2.7
Identities = 17/204 (8%), Positives = 48/204 (23%), Gaps = 15/204 (7%)
Query: 190 LSAGIKAVDSLVP-IGRGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGCA 248
L +G ++ G+ ++ GK+ + + +
Sbjct: 18 LFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVE 77
Query: 249 MG-------EFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVK 301
+ + + + DE ++ + +++
Sbjct: 78 ETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLA 137
Query: 302 RLTDSGAMGYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAY 361
+L + ++ + + SG + DN L + V
Sbjct: 138 KLAYMRSGLGCDVI-----ILDHISIVVSASGESDERKMIDNLMTKLKGFAK--STGVVL 190
Query: 362 RQMSLLLRRPPGREAYPGDVFYLH 385
+ L G+ G +
Sbjct: 191 VVICHLKNPDKGKAHEEGRPVSIT 214
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 28.1 bits (61), Expect = 2.8
Identities = 8/72 (11%), Positives = 15/72 (20%), Gaps = 7/72 (9%)
Query: 424 NVISITDGQIFLETELFYKGMALNLEPDNVGVVVFGNDRLIKEGDIVKR-------TGAI 476
+ + + + +P G + G LIKE G
Sbjct: 267 PCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHLGGA 326
Query: 477 VDVPVGEDLLGR 488
+
Sbjct: 327 PALSAYSSFFPT 338
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}
Length = 306
Score = 27.8 bits (60), Expect = 3.0
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 4 LSARLAAALAKN--IPSSLNQANWAATQIASRKFNVSASSRAAEISSILEER 53
+ L AL + +P ++ A+ AA +RK + EI + L+ +
Sbjct: 254 FNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDRQ 305
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.7 bits (60), Expect = 3.2
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 190 LSAGIKAVDSLVPIG--RGQRELIIGDRQTGKTALAIDTIIN 229
+ I+ D + G G+ L+ G TGKT +I + N
Sbjct: 8 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN 49
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 27.8 bits (60), Expect = 3.7
Identities = 13/52 (25%), Positives = 16/52 (30%), Gaps = 6/52 (11%)
Query: 123 YIPTNVISITDGQI-----FLETELFYKVDRGSINCGQLIIGDRQTGKTALA 169
YIP + G+ L +N IG GKT LA
Sbjct: 13 YIPPELRVR-RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 63
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus
subtilis [TaxId: 1423]}
Length = 63
Score = 25.4 bits (56), Expect = 3.8
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 288 AIGQKRSTVAQIVKRLTDSGAM-GYTIIVSATA 319
I +V + V++L G + YT+ V
Sbjct: 28 KIKLSPPSVTERVRQLESFGIIKQYTLEVDQKK 60
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.6 bits (60), Expect = 4.0
Identities = 20/149 (13%), Positives = 41/149 (27%), Gaps = 3/149 (2%)
Query: 190 LSAGIKAVDSLVPIG--RGQRELIIGDRQTGKTALAIDTIINQKSIYAAPLQYLAPYSGC 247
+S+G+ +D + G + L G TGKT L + N + + + S
Sbjct: 8 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA 67
Query: 248 AMGEFFRDNGKHALIIYDDLSKQAVAYRQDEKKKLYCIYVAIGQKRSTVAQIVKRLTDSG 307
+ G + + + E L I + + +
Sbjct: 68 QLLRNAYSWGMDFEEMERQ-NLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLS 126
Query: 308 AMGYTIIVSATASDAAPLQYLAPYSGCAM 336
A+ + +A + A
Sbjct: 127 ALARGVSNNAFRQFVIGVTGYAKQEEITG 155
>d2gvia1 d.81.3.1 (A:1-168) Uncharacterized protein Ta1109
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 168
Score = 26.4 bits (58), Expect = 7.1
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 322 AAPLQYLAPYSGCAMGE---FFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYP 378
Q +GC G+ GK ALI+Y K + + S + +
Sbjct: 63 NDGAQAA---TGCTYGKGLFSLLGYGKLALILYRPGRKAIRVHVRNSFMDELSTRASDFF 119
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 26.3 bits (56), Expect = 8.5
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 147 DRGSINCGQLIIGDRQTGKTALAIDTIINQKRKKRRRLLKYN 188
+ G ++G TGKT K K R + N
Sbjct: 38 NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,923,741
Number of extensions: 89416
Number of successful extensions: 388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 50
Length of query: 539
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 449
Effective length of database: 1,171,896
Effective search space: 526181304
Effective search space used: 526181304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)