BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13777
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 193 bits (490), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 433 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 492
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
RG+LDKL+P+KIT FE FL+H+ S + LL I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 493 RGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGF 551
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 192 bits (489), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 449
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
RG+LDKL+P+KIT FE FL+H+ S + LL I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 450 RGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGF 508
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 192 bits (488), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 449
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
RG+LDKL+P+KIT FE FL+H+ S + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 450 RGYLDKLEPSKITKFESAFLSHVVSQHQSLLGNIRSDGKISEQSDAKLKEIVTNFLAGF 508
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 192 bits (487), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 372 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 431
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
RG+LDKL+P+KIT FE FL+H+ S + LL I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 432 RGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 490
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 192 bits (487), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 449
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
RG+LDKL+P+KIT FE FL+H+ S + LL I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 450 RGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 508
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 192 bits (487), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 449
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
RG+LDKL+P+KIT FE FL+H+ S + LL I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 450 RGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 508
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 192 bits (487), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 449
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
RG+LDKL+P+KIT FE FL+H+ S + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 450 RGYLDKLEPSKITKFESAFLSHVVSQHQSLLGNIRTDGKISEQSDAKLKEIVTNFLAGF 508
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 167 bits (423), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 97/119 (81%), Gaps = 8/119 (6%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
MKLELAQYREVA LDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 367 MKLELAQYREVA--------LDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 418
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
RG+LDKL+P+KIT FE FL+H+ S + LL I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 419 RGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 477
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 91/119 (76%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
+KL LAQYREVAAFAQFGSDLDA+T+Q L RG RLT+LLKQ QY P+A EEQV +IY GV
Sbjct: 427 LKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGV 486
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
GHLD ++ ++I FE FL+++KS+ LL I+++G+++++ A LK+ +F+A F
Sbjct: 487 NGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 545
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 91/119 (76%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
+KL LAQYREVAAFAQFGSDLDA+T+Q L RG RLT+LLKQ QY P+A EEQV +IY GV
Sbjct: 392 LKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGV 451
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
GHLD ++ ++I FE FL+++KS+ LL I+++G+++++ A LK+ +F+A F
Sbjct: 452 NGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 91/119 (76%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
+KL LAQYREVAAFAQFGSDLDA+T+Q L RG RLT+LLKQ QY P+A EEQV +IY GV
Sbjct: 392 LKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGV 451
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
GHLD ++ ++I FE FL+++KS+ LL I+++G+++++ A LK+ +F+A F
Sbjct: 452 NGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 91/119 (76%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
+KL LAQYREVAAFAQFGSDLDA+T+Q L RG RLT+LLKQ QY P+A EEQV +IY GV
Sbjct: 367 LKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGV 426
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
GHLD ++ ++I FE FL+++KS+ LL I+++G+++++ A LK+ +F+A F
Sbjct: 427 NGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 485
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 91/119 (76%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
+KL LAQYREVAAFAQFGSDLDA+T+Q L RG RLT+LLKQ QY P+A EEQV +IY GV
Sbjct: 368 LKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGV 427
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
GHLD ++ ++I FE FL+++KS+ LL I+++G+++++ A LK+ +F+A F
Sbjct: 428 NGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 486
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 132 bits (333), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 90/119 (75%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
+KL LAQYREVAA AQFGSDLDA+T+Q L RG RLT+LLKQ QY P+A EEQV +IY GV
Sbjct: 392 LKLFLAQYREVAASAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGV 451
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
GHLD ++ ++I FE FL+++KS+ LL I+++G+++++ A LK+ +F+A F
Sbjct: 452 NGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 78/119 (65%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
++++LAQYRE+ FAQF ++LD AT+ + RG RL ELLKQ QY P +EEQV V++ GV
Sbjct: 395 LRIDLAQYRELETFAQFATELDPATRAQIIRGQRLXELLKQEQYSPXPVEEQVVVLFAGV 454
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
RG+LD L ++ FEKEFL + +L+ IK + ++T +T+ KLK + F F
Sbjct: 455 RGYLDDLPVEEVRRFEKEFLRFXHEKHQDILDDIKTKKELTSETEEKLKKAIEEFKTTF 513
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 2/120 (1%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
++L+LAQYRE+ AFAQFGSDLD ATQ LNRG R E+LKQ ++ PM +EEQV IY
Sbjct: 382 LRLDLAQYRELQAFAQFGSDLDKATQAKLNRGERTVEILKQDEHKPMPVEEQVISIYAVT 441
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
G +D + + FE+E L+ +++++ LL+ I++ G++ + + L + F FT
Sbjct: 442 NGFMDDIPVEDVRRFEEELLSFMRANKDSLLDHIRQTGELPDTKE--LDAAIEEFKKGFT 499
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 78/117 (66%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
++ LAQYRE+AAF+QF SDLD AT++ L+ G ++TELLKQ QY PM++ +Q V++
Sbjct: 393 IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAE 452
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLA 117
RG+L ++ +KI +FE LA++ L++ I + G ++ + KLK ++ +F A
Sbjct: 453 RGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFKA 509
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 71/119 (59%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
+KLELAQ+ E+ AFAQF SDLD ATQ L RG RL ELLKQ Q P+ +EEQV IY G
Sbjct: 383 LKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGT 442
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
G+LD L+ ++ + E ++K+++ E I TE+ +A LK + + F
Sbjct: 443 NGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERF 501
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 65/105 (61%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
++L+LA YRE+ AFAQFGSDLD ATQ + RG R E+LKQ + P+ +E+QV +IY
Sbjct: 382 LRLDLAAYRELEAFAQFGSDLDKATQANVARGARTVEVLKQDLHQPIPVEKQVLIIYALT 441
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTD 105
RG LD + + FEKEF + + + LLE I+ + + D
Sbjct: 442 RGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTKDLPNEDD 486
>pdb|3V03|A Chain A, Crystal Structure Of Bovine Serum Albumin
pdb|3V03|B Chain B, Crystal Structure Of Bovine Serum Albumin
pdb|4F5S|A Chain A, Crystal Structure Of Bovine Serum Albumin
pdb|4F5S|B Chain B, Crystal Structure Of Bovine Serum Albumin
Length = 583
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 23 AATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAH 82
T+ L+NR + L YVP A +E++ + D + EK+
Sbjct: 475 CCTESLVNRRPCFSALTPDETYVPKAFDEKLFTFH---------ADICTLPDTEKQI--- 522
Query: 83 IKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLA 117
+ L+E +K + K TE+ +LKTV+ NF+A
Sbjct: 523 --KKQTALVELLKHKPKATEE---QLKTVMENFVA 552
>pdb|4F5X|W Chain W, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1089
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 10 EVAAFAQFGSDLDAATQQLL-------NRGVRLTELLKQGQYVPMAIEEQVAVI 56
E+AA + F + + ++QLL +RG+ LTE K Y P+++E++ A I
Sbjct: 801 EIAASSTFKNYVTRLSEQLLFSKNNIVSRGIALTEKAKLNSYAPISLEKRRAQI 854
>pdb|2R7Q|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (C-
Terminal Hexahistidine-Tagged)
pdb|2R7R|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)
Complex
pdb|2R7S|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1 RNA (UGUGCC)
Complex
pdb|2R7T|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGAACC)
Complex
pdb|2R7U|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (AAAAGCC)
Complex
pdb|2R7V|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (GGCUUU)
COMPLEX
pdb|2R7W|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)MRNA
5'-Cap (M7gpppg) Complex
pdb|2R7X|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
pdb|2R7X|B Chain B, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
Length = 1095
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 10 EVAAFAQFGSDLDAATQQLL-------NRGVRLTELLKQGQYVPMAIEEQVAVI 56
E+AA + F + + ++QLL +RG+ LTE K Y P+++E++ A I
Sbjct: 801 EIAASSTFKNYVTRLSEQLLFSKNNIVSRGIALTEKAKLNSYAPISLEKRRAQI 854
>pdb|2R7O|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (N-
Terminal Hexahistidine-Tagged)
pdb|4AU6|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1095
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 10 EVAAFAQFGSDLDAATQQLL-------NRGVRLTELLKQGQYVPMAIEEQVAVI 56
E+AA + F + + ++QLL +RG+ LTE K Y P+++E++ A I
Sbjct: 807 EIAASSTFKNYVTRLSEQLLFSKNNIVSRGIALTEKAKLNSYAPISLEKRRAQI 860
>pdb|2GB5|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
pdb|2GB5|B Chain B, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
Length = 269
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 20 DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKE- 78
DLD QL RGV+L E + +Y YCG + K + A + + +E
Sbjct: 85 DLDVGLFQLAGRGVQLAEFYRSHKYCG----------YCGHEXYPSKTEWAXLCSHCRER 134
Query: 79 FLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
+ I ++ +I+++ I + + V LA F
Sbjct: 135 YYPQIAPC---IIVAIRRDDSILLAQHTRHRNGVHTVLAGFV 173
>pdb|1VK6|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (1790429) From
Escherichia Coli K12 At 2.20 A Resolution
Length = 269
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 20 DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKE- 78
DLD QL RGV+L E + +Y YCG + K + A + + +E
Sbjct: 85 DLDVGLFQLAGRGVQLAEFYRSHKYCG----------YCGHEXYPSKTEWAXLCSHCRER 134
Query: 79 FLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
+ I ++ +I+++ I + + V LA F
Sbjct: 135 YYPQIAPC---IIVAIRRDDSILLAQHTRHRNGVHTVLAGFV 173
>pdb|3D8R|A Chain A, Thermus Thermophilus Uroporphyrinogen Iii Synthase
pdb|3D8S|A Chain A, Thermus Thermophilus Uroporphyrinogen Iii Synthase
pdb|3D8N|A Chain A, Uroporphyrinogen Iii Synthase-uroporphyringen Iii Complex
pdb|3D8T|A Chain A, Thermus Thermophilus Uroporphyrinogen Iii Synthase
pdb|3D8T|B Chain B, Thermus Thermophilus Uroporphyrinogen Iii Synthase
Length = 286
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 20/111 (18%)
Query: 5 LAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVP-----MAIEEQVAVIYCG 59
L Q R VAA +G L L RG R+ L+ +++P + +EE V
Sbjct: 152 LPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMPY-RHLPDPEGILRLEEAV------ 204
Query: 60 VRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKE------GKITEDT 104
+RG +D L A + + EFL + L E++ G++T D
Sbjct: 205 LRGEVDAL--AFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADA 253
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 33 VRLTELLKQGQYVPMAIEEQVAVIY-----CGVRGHLDKLDPAKITTF-EKEFLAHIKSS 86
V +++L + QYVP+++ ++++ Y C V +I F K +A+I +
Sbjct: 84 VTVSKLAELNQYVPVSVVDELSTEYLKNFKCVVVTETSLTKQLEINDFTHKNHIAYIAAD 143
Query: 87 ERGLLESI---KKEGKITEDTDAK 107
RGL SI E I DTD
Sbjct: 144 SRGLFGSIFCDFGENFICTDTDGN 167
>pdb|1WD7|A Chain A, Crystal Structure Of Uroporphyrinogen Iii Synthase From An
Extremely Thermophilic Bacterium Thermus Thermophilus
Hb8 (Wild Type, Native, Form-2 Crystal)
pdb|1WD7|B Chain B, Crystal Structure Of Uroporphyrinogen Iii Synthase From An
Extremely Thermophilic Bacterium Thermus Thermophilus
Hb8 (Wild Type, Native, Form-2 Crystal)
pdb|1WCW|A Chain A, Crystal Structure Of Uroporphyrinogen Iii Synthase From An
Extremely Thermophilic Bacterium Thermus Thermophilus
Hb8 (Wild Type, Native, Form-1 Crystal)
Length = 261
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 20/111 (18%)
Query: 5 LAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVP-----MAIEEQVAVIYCG 59
L Q R VAA +G L L RG R+ L+ +++P + +EE +
Sbjct: 127 LPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMPY-RHLPDPEGILRLEEAL------ 179
Query: 60 VRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKE------GKITEDT 104
+RG +D L A + + EFL + L E++ G++T D
Sbjct: 180 LRGEVDAL--AFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADA 228
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 4 ELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELL 39
EL + +E+ F+Q G + A +QL+N G R L+
Sbjct: 520 ELPKDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLI 555
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 4 ELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELL 39
EL + +E+ F+Q G + A +QL+N G R L+
Sbjct: 520 ELPKDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLI 555
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 4 ELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELL 39
EL + +E+ F Q G + A +QL+N G R L+
Sbjct: 520 ELPKDKEIIIFCQVGLRGNVAYRQLVNNGYRARNLI 555
>pdb|1RI6|A Chain A, Structure Of A Putative Isomerase From E. Coli
Length = 343
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 44 YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHI 83
+VP ++++ + GHL DPA++TT E H+
Sbjct: 144 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 183
>pdb|3BM7|A Chain A, Crystal Structure Of A Putative Antibiotic Biosynthesis
Monooxygenase (Cc_2132) From Caulobacter Crescentus
Cb15 At 1.35 A Resolution
Length = 115
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 66 KLDPAKITTFEKEFL---AHIKSSERGLL 91
K+ PAK FEK FL A +K++E G L
Sbjct: 28 KVQPAKAAEFEKVFLDLAAKVKANEPGCL 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,081,132
Number of Sequences: 62578
Number of extensions: 107254
Number of successful extensions: 319
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 38
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)