Query psy13777
Match_columns 121
No_of_seqs 132 out of 1038
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 20:14:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oaa_A ATP synthase subunit al 100.0 3.3E-30 1.1E-34 217.8 12.9 121 1-121 393-513 (513)
2 2r9v_A ATP synthase subunit al 99.9 4.3E-27 1.5E-31 199.0 14.3 120 1-120 395-514 (515)
3 1fx0_A ATP synthase alpha chai 99.9 3.7E-27 1.3E-31 199.2 13.8 121 1-121 383-503 (507)
4 2ck3_A ATP synthase subunit al 99.9 3.7E-27 1.3E-31 199.3 13.2 120 1-120 390-509 (510)
5 2qe7_A ATP synthase subunit al 99.9 2.7E-26 9.1E-31 193.8 5.4 117 1-119 382-498 (502)
6 2c61_A A-type ATP synthase non 99.1 5.9E-11 2E-15 99.6 4.8 80 1-84 380-462 (469)
7 3vr4_D V-type sodium ATPase su 98.9 1.1E-09 3.6E-14 91.9 4.5 77 1-81 379-458 (465)
8 2obl_A ESCN; ATPase, hydrolase 98.7 9.3E-09 3.2E-13 82.6 4.7 59 1-59 284-345 (347)
9 2ck3_D ATP synthase subunit be 98.6 1.2E-07 4.2E-12 79.8 7.7 71 1-71 378-460 (482)
10 1sky_E F1-ATPase, F1-ATP synth 98.5 2.5E-07 8.5E-12 77.7 8.0 71 1-71 370-452 (473)
11 2dpy_A FLII, flagellum-specifi 98.5 5.9E-08 2E-12 80.2 4.1 60 1-60 373-435 (438)
12 3gqb_B V-type ATP synthase bet 98.5 3.4E-08 1.2E-12 82.8 2.2 76 1-81 382-460 (464)
13 1fx0_B ATP synthase beta chain 98.5 1.8E-07 6.3E-12 79.0 5.9 71 1-71 391-473 (498)
14 3vr4_A V-type sodium ATPase ca 98.1 6.2E-06 2.1E-10 71.0 7.4 80 4-83 470-563 (600)
15 3mfy_A V-type ATP synthase alp 97.8 3.4E-05 1.2E-09 66.3 7.4 71 4-74 465-549 (588)
16 3gqb_A V-type ATP synthase alp 97.6 0.00015 5E-09 62.3 7.6 57 3-59 456-519 (578)
17 1cg5_B Protein (hemoglobin); o 80.7 5 0.00017 27.5 6.2 91 13-117 41-134 (141)
18 1spg_A Hemoglobin; carbon mono 76.6 9.8 0.00033 25.8 6.7 95 13-117 43-137 (144)
19 3d1k_A Hemoglobin subunit alph 65.7 19 0.00065 24.1 6.1 90 14-117 43-135 (142)
20 3bom_A Hemoglobin subunit alph 65.5 21 0.0007 24.0 6.3 90 14-117 44-136 (143)
21 1cg5_A Protein (hemoglobin); o 65.2 28 0.00096 23.3 7.3 89 14-117 43-134 (141)
22 1xq5_A Hemoglobin alpha-1 chai 60.5 35 0.0012 22.8 6.9 90 14-117 44-136 (143)
23 2lhb_A Hemoglobin V (cyano Met 59.5 19 0.00066 24.2 5.2 72 13-89 51-133 (149)
24 1out_A Hemoglobin I; heme, oxy 59.5 21 0.00073 24.0 5.5 90 14-117 44-136 (143)
25 1h3o_B Transcription initiatio 59.1 13 0.00045 23.5 3.9 31 88-118 12-42 (76)
26 3mkb_B Hemoglobin subunit beta 57.2 42 0.0014 22.7 6.8 87 14-116 42-128 (136)
27 2nrl_A Myoglobin; transport pr 56.9 30 0.001 23.2 5.9 87 14-116 40-133 (147)
28 2r80_B Hemoglobin subunit beta 54.5 45 0.0016 22.3 7.6 91 13-117 41-139 (146)
29 1sct_B Hemoglobin II (carbonmo 52.3 26 0.00087 23.6 4.9 92 13-116 52-148 (151)
30 1lhs_A Myoglobin; oxygen stora 51.5 29 0.001 23.5 5.1 89 14-116 43-139 (153)
31 2w72_C Human hemoglobin A; iro 50.1 36 0.0012 22.6 5.3 89 14-117 43-134 (141)
32 1gcv_B Hemoglobin; oxygen stor 49.4 56 0.0019 21.8 6.8 85 14-117 42-129 (136)
33 1eca_A Erythrocruorin (AQUO Me 49.1 33 0.0011 22.9 5.0 68 14-87 38-112 (136)
34 1x9f_A Globin IV, extracellula 49.0 15 0.0005 25.1 3.2 71 14-85 53-125 (151)
35 1sct_A Hemoglobin II (carbonmo 48.5 24 0.00083 23.8 4.3 91 14-116 52-147 (150)
36 1ghh_A DINI, DNA-damage-induci 45.8 8.3 0.00029 24.7 1.4 52 65-117 11-72 (81)
37 1h97_A Globin-3; HET: HEM; 1.1 44.7 69 0.0024 21.5 8.9 90 13-116 45-140 (147)
38 4hrt_B Hemoglobin B chain; oxy 42.0 77 0.0026 21.3 7.0 92 13-116 53-149 (152)
39 2dc3_A Cytoglobin; myoglobin, 41.9 57 0.002 23.0 5.6 83 24-115 77-161 (193)
40 1yhu_C Hemoglobin B1A chain; g 41.8 14 0.00048 25.0 2.1 72 13-85 50-123 (148)
41 2vyw_A Hemoglobin; trematode, 41.6 75 0.0026 21.4 5.9 90 14-117 47-142 (148)
42 1yhu_A Hemoglobin A1 chain; gl 41.3 38 0.0013 22.7 4.4 71 14-86 46-118 (145)
43 3mkb_A Hemoglobin subunit alph 40.7 44 0.0015 22.5 4.6 91 14-117 43-133 (140)
44 1out_B Hemoglobin I; heme, oxy 39.4 84 0.0029 21.0 7.5 90 14-117 42-139 (146)
45 1a6m_A Myoglobin; heme protein 38.6 62 0.0021 21.7 5.1 79 25-116 58-139 (151)
46 2w72_B Human hemoglobin A; iro 38.2 87 0.003 20.8 8.4 93 14-117 42-139 (146)
47 1mba_A Myoglobin; oxygen stora 36.8 90 0.0031 20.6 5.8 87 14-117 44-140 (147)
48 1jeb_A Hemoglobin zeta chain; 36.6 90 0.0031 20.5 6.0 89 14-117 44-135 (142)
49 1wmu_A Hemoglobin D alpha chai 36.2 91 0.0031 20.5 6.5 89 14-117 43-134 (141)
50 2aa1_B Hemoglobin beta-C chain 35.8 97 0.0033 20.7 8.0 90 14-117 42-139 (146)
51 1zv1_A Doublesex protein; UBA 35.7 22 0.00074 21.9 2.0 20 18-38 38-57 (65)
52 1hlb_A Hemoglobin (deoxy); oxy 35.4 99 0.0034 20.7 7.0 91 13-118 53-152 (158)
53 2r80_A Hemoglobin subunit alph 34.2 70 0.0024 21.2 4.8 43 66-117 92-134 (141)
54 1it2_A Hemoglobin; hagfish, de 32.9 70 0.0024 21.4 4.6 70 14-87 52-129 (146)
55 2zs0_D Extracellular giant hem 30.9 42 0.0014 22.8 3.2 70 13-86 49-121 (145)
56 3vi8_A Peroxisome proliferator 30.0 36 0.0012 25.5 3.0 44 10-59 74-117 (273)
57 1x9f_D Globin C, hemoglobin ch 29.7 62 0.0021 21.3 3.9 71 14-87 46-119 (140)
58 2zs0_B Extracellular giant hem 29.1 1.2E+02 0.0042 19.9 5.3 72 13-87 45-119 (142)
59 1x9f_C Erythrocruorin, globin 28.1 49 0.0017 22.3 3.1 72 13-86 53-127 (153)
60 2oif_A Horvu GLB1, non-legume 27.3 1.4E+02 0.0047 19.8 6.1 91 14-117 51-152 (162)
61 1c7c_A Protein (deoxyhemoglobi 25.8 1.6E+02 0.0056 21.8 6.0 90 13-117 184-276 (283)
62 2zs0_A Extracellular giant hem 25.5 74 0.0025 21.0 3.6 72 13-87 45-119 (140)
63 1x9f_B Erythrocruorin, globin 25.5 93 0.0032 20.6 4.2 70 14-86 48-120 (145)
64 2c0k_A Hemoglobin; oxygen tran 24.9 1.6E+02 0.0053 19.6 8.7 90 14-117 42-141 (151)
65 3bzc_A TEX; helix-turn-helix, 24.8 76 0.0026 28.0 4.4 48 63-111 51-98 (785)
66 3g46_A Globin-1; oxygen transp 24.4 1.6E+02 0.0054 19.5 6.5 39 66-116 105-143 (146)
67 4dbg_B Ring finger protein 31; 24.1 1.7E+02 0.0059 20.9 5.5 45 26-74 8-52 (162)
68 1ois_A DNA topoisomerase I; DN 23.5 2.4E+02 0.0081 21.2 7.5 70 49-119 40-130 (223)
69 3pt8_A Hemoglobin II; oxygen c 23.4 1.6E+02 0.0056 19.3 9.0 86 13-115 44-140 (152)
70 4h3z_A TRNA (guanine-N(1)-)-me 22.3 1.8E+02 0.0062 22.5 5.6 48 70-117 227-275 (276)
71 2p7v_A Regulator of sigma D; R 22.3 2.1E+02 0.0073 20.3 8.9 56 52-108 28-89 (158)
72 2bf9_A Pancreatic hormone; tur 22.1 1E+02 0.0035 16.7 3.0 20 65-84 10-29 (36)
73 1bba_A Bovine pancreatic polyp 21.9 98 0.0034 16.8 2.9 20 65-84 10-29 (36)
74 4f43_A Protelomerase; recombin 20.4 19 0.00066 28.6 -0.3 20 28-47 148-167 (320)
75 3sjd_D Golgi to ER traffic pro 20.2 65 0.0022 18.4 2.0 22 17-38 10-31 (46)
76 2zs0_C Extracellular giant hem 20.2 97 0.0033 20.6 3.4 73 13-87 49-124 (147)
No 1
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=99.97 E-value=3.3e-30 Score=217.80 Aligned_cols=121 Identities=40% Similarity=0.658 Sum_probs=116.7
Q ss_pred ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL 80 (121)
Q Consensus 1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~ 80 (121)
+|..||||+||++|++||+|||++|+.+|+||+||+++|||++|+|+++++|+++|||+++||+|+||+++|..|+.+++
T Consensus 393 lr~~la~y~el~~~~~~g~~ld~~~~~~l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~a~~~g~ld~~~~~~~~~~~~~~~ 472 (513)
T 3oaa_A 393 IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALL 472 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHTCCCSSCCCCTTHHHHHHHHHHSCTTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCccCCHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhccC
Q psy13777 81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG 121 (121)
Q Consensus 81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~~ 121 (121)
+|+++++|++++.|+.++.+++++++.|++++++|++...|
T Consensus 473 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 513 (513)
T 3oaa_A 473 AYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFKATQSW 513 (513)
T ss_dssp HHHTGGGCHHHHHHHHHCCCCHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999887655
No 2
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=99.95 E-value=4.3e-27 Score=198.96 Aligned_cols=120 Identities=46% Similarity=0.796 Sum_probs=117.4
Q ss_pred ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL 80 (121)
Q Consensus 1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~ 80 (121)
+|..||||+|+++|++||+|||++++.++++|++|+++|+|++|+|+++++|+..||++.+|++|++|+++|..|+..++
T Consensus 395 lr~~la~y~el~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~~~~~g~ld~i~~~~i~~~~~~~~ 474 (515)
T 2r9v_A 395 LRIDLAQYRELETFAQFATELDPATRAQIIRGQRLMELLKQEQYSPMPVEEQVVVLFAGVRGYLDDLPVEEVRRFEKEFL 474 (515)
T ss_dssp HHHHHHHHHHHHTTGGGCSCCCHHHHHHHHHHHHHHHHTCCCTTCCCCHHHHHHHHHHHHTTTTTTSCGGGHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcc
Q psy13777 81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120 (121)
Q Consensus 81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~ 120 (121)
+|+++++|++++.|..++.++++.++.|++++++|++.|.
T Consensus 475 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 514 (515)
T 2r9v_A 475 RFMHEKHQDILDDIKTKKELTSETEEKLKKAIEEFKTTFR 514 (515)
T ss_dssp HHHHHHCHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998774
No 3
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=99.95 E-value=3.7e-27 Score=199.16 Aligned_cols=121 Identities=43% Similarity=0.618 Sum_probs=117.0
Q ss_pred ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL 80 (121)
Q Consensus 1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~ 80 (121)
+|..||||+|+++|++||+|||++++.+++||+||+++|||++|+|+++++|+..+|++.+|++|++|+++|..|+..++
T Consensus 383 lr~~la~y~el~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~~~~~g~l~~i~~~~i~~~~~~~~ 462 (507)
T 1fx0_A 383 LKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELR 462 (507)
T ss_dssp HHHHHHHHHHHTTTGGGCSSCCHHHHHHHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHHHTTSSSSSCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhhchhcCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhccC
Q psy13777 81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG 121 (121)
Q Consensus 81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~~ 121 (121)
+|+++++|++++.|..++.++++.++.|++++++|++.|.|
T Consensus 463 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 503 (507)
T 1fx0_A 463 TYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERFLL 503 (507)
T ss_dssp HHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999988743
No 4
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=99.94 E-value=3.7e-27 Score=199.30 Aligned_cols=120 Identities=77% Similarity=1.118 Sum_probs=117.4
Q ss_pred ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL 80 (121)
Q Consensus 1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~ 80 (121)
+|..||||+|+++|++||+|||++++.+++||++|+++|+|++|+|+++++|+..||++.+|++|++|+++|..|+..++
T Consensus 390 lr~~la~y~el~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~l~~i~~~~i~~~~~~~~ 469 (510)
T 2ck3_A 390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFL 469 (510)
T ss_dssp HHHHHHHHHHHGGGSSSCSSSCHHHHHHHHHHHHHHHTTCCCSSCCCCHHHHHHHHHHHHTTSSTTSCGGGHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcc
Q psy13777 81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120 (121)
Q Consensus 81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~ 120 (121)
+|+++++|++++.|..++.++++.++.|++++++|++.|.
T Consensus 470 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 509 (510)
T 2ck3_A 470 SHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFE 509 (510)
T ss_dssp HHHHHHCHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998774
No 5
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=99.92 E-value=2.7e-26 Score=193.76 Aligned_cols=117 Identities=43% Similarity=0.744 Sum_probs=113.6
Q ss_pred ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL 80 (121)
Q Consensus 1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~ 80 (121)
+|..||||+|+++|++||+|||++++.+++||++|+++|+|++|+|+++++|+..||++.+|++|++|+++|..|++.++
T Consensus 382 lr~~la~y~el~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~l~~i~~~~i~~~~~~~~ 461 (502)
T 2qe7_A 382 LRLDLAQYRELQAFAQFGSDLDKATQAKLNRGERTVEILKQDEHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELL 461 (502)
T ss_dssp HHHHHHHHHHGGGSTTCCCCTTTTTTTTHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHHHTTTTTSSCSTTHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q psy13777 81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119 (121)
Q Consensus 81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f 119 (121)
+|+++++|++++.|..++.++++ +.|++++++|++.|
T Consensus 462 ~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~ 498 (502)
T 2qe7_A 462 SFMRANKDSLLDHIRQTGELPDT--KELDAAIEEFKKGF 498 (502)
T ss_dssp HHHHHTTHHHHHHHHSSCCCCCT--THHHHHHHTTCSCS
T ss_pred HHHHhhhHHHHHHHHhcCCCCHH--HHHHHHHHHHHHhh
Confidence 99999999999999999999999 99999999987766
No 6
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=99.09 E-value=5.9e-11 Score=99.61 Aligned_cols=80 Identities=14% Similarity=0.260 Sum_probs=74.9
Q ss_pred ChhhhhhhHHHHHHHhhc--CCccHHHHHHHHhHHHHHH-HhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHH
Q psy13777 1 MKLELAQYREVAAFAQFG--SDLDAATQQLLNRGVRLTE-LLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEK 77 (121)
Q Consensus 1 LkL~LAQyrELeaFaqFg--SdLD~~Tk~~L~rG~rl~e-lLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~ 77 (121)
++..|+||+||+.|.+|+ ++|++.++..+++|++|.+ .|+|+.|+|+++++++..+|++ ++.+|.+.+..+..
T Consensus 380 l~~~l~~~~eL~~i~~~~G~~~l~d~~~~~l~~~~~i~~~fL~Q~~~~~~~~~et~~~l~~~----l~~~~~~~~~~~~~ 455 (469)
T 2c61_A 380 MYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIGWQI----LTHLPENQLGRIDN 455 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHHH----HTTSCGGGCTTSCH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----HHhCCHHHHHHHHH
Confidence 367899999999999997 7999999999999999997 9999999999999999999994 78999999999999
Q ss_pred HHHHHHH
Q psy13777 78 EFLAHIK 84 (121)
Q Consensus 78 ~l~~~l~ 84 (121)
++++++.
T Consensus 456 ~~~~~~~ 462 (469)
T 2c61_A 456 KYIQKYH 462 (469)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 9998874
No 7
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=98.88 E-value=1.1e-09 Score=91.94 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=71.3
Q ss_pred ChhhhhhhHHHHHHHhhc--CCccHHHHHHHHhHHHH-HHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHH
Q psy13777 1 MKLELAQYREVAAFAQFG--SDLDAATQQLLNRGVRL-TELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEK 77 (121)
Q Consensus 1 LkL~LAQyrELeaFaqFg--SdLD~~Tk~~L~rG~rl-~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~ 77 (121)
+|..|++|+||+.|.+++ ++|++.++..+.+|+++ .+.|+|+.++|.+.++++.++++ +++.+|.+.+.+|+.
T Consensus 379 l~~~~~~~~el~~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~~~e~~~~~~~~~~l~~----~l~~~p~~~~~~~~~ 454 (465)
T 3vr4_D 379 LFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAERFENEYVNQGFYTNRTITETLDLGWE----LLAMLPRTELKRIKD 454 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHH----HHTTSCTTTCTTSCH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhHHHHHHHhCCCCCCCCCHHHHHHHHHH----HHhhCCHHHHHHHHH
Confidence 367899999999999996 68999999999999998 79999999999999999999998 678999999999999
Q ss_pred HHHH
Q psy13777 78 EFLA 81 (121)
Q Consensus 78 ~l~~ 81 (121)
++++
T Consensus 455 ~~~~ 458 (465)
T 3vr4_D 455 DLLD 458 (465)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 8
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.71 E-value=9.3e-09 Score=82.61 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=55.8
Q ss_pred ChhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777 1 MKLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG 59 (121)
Q Consensus 1 LkL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~ 59 (121)
+|..||+|+|++.|.+||+ +.|+.|+..+++|+++.+.|+|+.++|+++++|+..+..+
T Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~Q~~~~~~~~~~~~~~~~~~ 345 (347)
T 2obl_A 284 CKKLIATYKNPELLIRIGEYTMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKV 345 (347)
T ss_dssp HHHHHHHCCCTHHHHTTTCCCCCSCHHHHHHHHTHHHHHHHHCCCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3678999999999999998 9999999999999999999999999999999999998875
No 9
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=98.57 E-value=1.2e-07 Score=79.77 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=64.0
Q ss_pred ChhhhhhhHHHHHH-HhhcCC-ccHHHHHHHHhHHHHHHHhhcCCC----------CCCCHHHHHHHHHHHhhCCCCCCC
Q psy13777 1 MKLELAQYREVAAF-AQFGSD-LDAATQQLLNRGVRLTELLKQGQY----------VPMAIEEQVAVIYCGVRGHLDKLD 68 (121)
Q Consensus 1 LkL~LAQyrELeaF-aqFgSd-LD~~Tk~~L~rG~rl~elLKQ~q~----------~P~~~~eQv~~L~a~~~g~ld~i~ 68 (121)
+|..||+|+|++.+ +.+|+| |++.++..+++|++|.+.|+|+.| .+.+.++-+--|..+.+|-.|++|
T Consensus 378 lr~~la~y~el~~li~i~G~~~l~~~d~~~l~~~~~i~~fL~Q~~~v~~~f~~~~g~~~~~~~t~~~l~~il~g~~d~~p 457 (482)
T 2ck3_D 378 VQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLP 457 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHTCCCCGGGHHHHSSCCCCCCHHHHHHHHHHHHTTTTTTSC
T ss_pred HHHHHHhhhHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHcCCchHHHHhhcCccccCCHHHHHHHHHHHhcccccCCC
Confidence 47789999999997 789986 999999999999999999999965 888999999999999899999998
Q ss_pred hhH
Q psy13777 69 PAK 71 (121)
Q Consensus 69 ~~~ 71 (121)
...
T Consensus 458 e~~ 460 (482)
T 2ck3_D 458 EQA 460 (482)
T ss_dssp GGG
T ss_pred HHH
Confidence 864
No 10
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=98.51 E-value=2.5e-07 Score=77.70 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=64.6
Q ss_pred ChhhhhhhHHHHH-HHhhcC-CccHHHHHHHHhHHHHHHHhhcCCC----------CCCCHHHHHHHHHHHhhCCCCCCC
Q psy13777 1 MKLELAQYREVAA-FAQFGS-DLDAATQQLLNRGVRLTELLKQGQY----------VPMAIEEQVAVIYCGVRGHLDKLD 68 (121)
Q Consensus 1 LkL~LAQyrELea-FaqFgS-dLD~~Tk~~L~rG~rl~elLKQ~q~----------~P~~~~eQv~~L~a~~~g~ld~i~ 68 (121)
+|..||+|+|++. |+.+|. +|++.++..+++|++|.+.|+|+.+ ...+.++.+-.|..+-+|-+|++|
T Consensus 370 lr~~la~y~e~~~li~i~g~~~ls~~d~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~~~~~~~t~~~l~~i~~~~~~~~~ 449 (473)
T 1sky_E 370 VQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILEGKYDHLP 449 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCTTHHHHHHHHHHHHHHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHTTTTTTSC
T ss_pred HHHHHHhHHHHHHHHHhhCcccCCHHHHHHHHHHHHHHHHHcCCchHhhhhhccCCccCCHHHHHHHHHHHhcccccCCC
Confidence 4778999999999 799996 8999999999999999999999976 678999999999999999999998
Q ss_pred hhH
Q psy13777 69 PAK 71 (121)
Q Consensus 69 ~~~ 71 (121)
.+.
T Consensus 450 ~~~ 452 (473)
T 1sky_E 450 EDR 452 (473)
T ss_dssp GGG
T ss_pred HHH
Confidence 865
No 11
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.51 E-value=5.9e-08 Score=80.19 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=56.4
Q ss_pred ChhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Q psy13777 1 MKLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60 (121)
Q Consensus 1 LkL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~ 60 (121)
+|..|++|+|++.|.+||+ ..|+.|+..+.+|+++.+.|+|+.++|++.++|+..|+.+-
T Consensus 373 l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~fl~Q~~~~~~~~~~~~~~~~~~~ 435 (438)
T 2dpy_A 373 FKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLEAFLQQGIFERADWEDSLQALDLIF 435 (438)
T ss_dssp HHHHHHHHHHGGGTSSSSCCCTTSCHHHHHHHTTHHHHHHHHCCCTTCCCCHHHHHHHHHHHS
T ss_pred HHHHHHhhHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 3567999999999999998 89999999999999999999999999999999999999873
No 12
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=98.49 E-value=3.4e-08 Score=82.84 Aligned_cols=76 Identities=13% Similarity=0.206 Sum_probs=64.9
Q ss_pred ChhhhhhhHHHHHHHhhc--CCccHHHHHHHHhHHHH-HHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHH
Q psy13777 1 MKLELAQYREVAAFAQFG--SDLDAATQQLLNRGVRL-TELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEK 77 (121)
Q Consensus 1 LkL~LAQyrELeaFaqFg--SdLD~~Tk~~L~rG~rl-~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~ 77 (121)
+|..|++|+||+.|.+++ ++|++.++..+.+|+++ .+.|+|+ ++|.+.++++..+|.+. ..+|.+.+..+..
T Consensus 382 l~~~~~~~~el~~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~-~e~~~~~~s~~~l~~ll----~~~p~~~~~~~~~ 456 (464)
T 3gqb_B 382 LYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQG-QQNRSIEESLQIAWALL----SMLPQGELKRISK 456 (464)
T ss_dssp HHHHHHHHHHHHHHTSSSCSCCCCSHHHHTTHHHHHHHHTTTCCT-TCCCCHHHHHHHHHHHH----TTSCGGGCTTSCH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhHHHHHHhcCCC-CCCCCHHHHHHHHHHHH----HhCCHHHHhcCCH
Confidence 467899999999999997 68999999999999998 5899999 99999999999999965 4567776666666
Q ss_pred HHHH
Q psy13777 78 EFLA 81 (121)
Q Consensus 78 ~l~~ 81 (121)
++++
T Consensus 457 ~~~~ 460 (464)
T 3gqb_B 457 DHIG 460 (464)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 13
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=98.46 E-value=1.8e-07 Score=78.98 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=65.0
Q ss_pred ChhhhhhhHHHHHH-HhhcCC-ccHHHHHHHHhHHHHHHHhhcCCC----------CCCCHHHHHHHHHHHhhCCCCCCC
Q psy13777 1 MKLELAQYREVAAF-AQFGSD-LDAATQQLLNRGVRLTELLKQGQY----------VPMAIEEQVAVIYCGVRGHLDKLD 68 (121)
Q Consensus 1 LkL~LAQyrELeaF-aqFgSd-LD~~Tk~~L~rG~rl~elLKQ~q~----------~P~~~~eQv~~L~a~~~g~ld~i~ 68 (121)
+|..||+|+|++.+ +.+|+| |++.++..+++|++|.+.|+|+.+ ...+.++-+-.+..+.+|-.|++|
T Consensus 391 lr~~la~y~el~~li~i~G~d~ls~~d~~~l~~~~~i~~fL~Q~~~v~e~ft~~~g~~v~~~~t~~~l~~il~g~~d~~p 470 (498)
T 1fx0_B 391 VKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLP 470 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTSCTTTHHHHHHHHHHHHHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTTTTTTSSSC
T ss_pred HHHHHHhhHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHcCCchHHHHhhcCCCcccCHHHHHHHHHHHhcCcccCCC
Confidence 46789999999998 679987 999999999999999999999965 899999999999999999999999
Q ss_pred hhH
Q psy13777 69 PAK 71 (121)
Q Consensus 69 ~~~ 71 (121)
...
T Consensus 471 e~~ 473 (498)
T 1fx0_B 471 EQA 473 (498)
T ss_dssp GGG
T ss_pred HHH
Confidence 864
No 14
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=98.10 E-value=6.2e-06 Score=71.00 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=64.2
Q ss_pred hhhhhHHHHHHHh-hcCC-ccHHHHHHHHhHHHHHH-HhhcCCCCC----CCHHHHHHHHHHHh------hCCCC-CCCh
Q psy13777 4 ELAQYREVAAFAQ-FGSD-LDAATQQLLNRGVRLTE-LLKQGQYVP----MAIEEQVAVIYCGV------RGHLD-KLDP 69 (121)
Q Consensus 4 ~LAQyrELeaFaq-FgSd-LD~~Tk~~L~rG~rl~e-lLKQ~q~~P----~~~~eQv~~L~a~~------~g~ld-~i~~ 69 (121)
-||+|+|++.+.+ +|.| |.+..+..+++|+++.+ .|+|+.|+| .|+++|+.+|..+. ..+++ .+|.
T Consensus 470 ~la~~~el~~ii~i~G~d~Ls~~dk~~l~~a~~i~e~fL~Q~~f~~~d~~~~~~kq~~~l~~i~~~~~~~~~~~~~~~~~ 549 (600)
T 3vr4_A 470 ILQEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGAYF 549 (600)
T ss_dssp HHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHhCCCCCcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 5899999999999 7999 99999999999999985 999999998 89999997766542 22322 5889
Q ss_pred hHHHHHHHHHHHHH
Q psy13777 70 AKITTFEKEFLAHI 83 (121)
Q Consensus 70 ~~v~~f~~~l~~~l 83 (121)
+.|..+...+...+
T Consensus 550 ~~i~~~~~~~~~~~ 563 (600)
T 3vr4_A 550 NEIMEGTVAVRERI 563 (600)
T ss_dssp HHHHHHCHHHHHHH
T ss_pred HHHHHHhHHHHHHH
Confidence 98887644444433
No 15
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=97.85 E-value=3.4e-05 Score=66.26 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=59.2
Q ss_pred hhhhhHHHHHHHh-hcCC-ccHHHHHHHHhHHHHH-HHhhcCCCCCC----CHHHHHHHHHHHh------hCCCC-CCCh
Q psy13777 4 ELAQYREVAAFAQ-FGSD-LDAATQQLLNRGVRLT-ELLKQGQYVPM----AIEEQVAVIYCGV------RGHLD-KLDP 69 (121)
Q Consensus 4 ~LAQyrELeaFaq-FgSd-LD~~Tk~~L~rG~rl~-elLKQ~q~~P~----~~~eQv~~L~a~~------~g~ld-~i~~ 69 (121)
-|++|+|++.+.+ +|.| |++..+..+++|+++. ..|+|+.|+|+ |+++|+.+|-.+. ..++. .+|.
T Consensus 465 ~La~~~el~~ii~i~G~d~Ls~~dk~~l~~ar~i~e~fL~Q~~f~~~d~~~~~~k~~~~l~~i~~~~~~~~~~~~~~~~~ 544 (588)
T 3mfy_A 465 LLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINRGVPL 544 (588)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 5899999999999 8999 9999999999999998 59999999999 9999997766542 11211 3677
Q ss_pred hHHHH
Q psy13777 70 AKITT 74 (121)
Q Consensus 70 ~~v~~ 74 (121)
+.|..
T Consensus 545 ~~i~~ 549 (588)
T 3mfy_A 545 EEIAK 549 (588)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77766
No 16
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=97.61 E-value=0.00015 Score=62.28 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=51.7
Q ss_pred hhhhhhHHHHHHHh-hcCC-ccHHHHHHHHhHHHHHH-HhhcCCCCC----CCHHHHHHHHHHH
Q psy13777 3 LELAQYREVAAFAQ-FGSD-LDAATQQLLNRGVRLTE-LLKQGQYVP----MAIEEQVAVIYCG 59 (121)
Q Consensus 3 L~LAQyrELeaFaq-FgSd-LD~~Tk~~L~rG~rl~e-lLKQ~q~~P----~~~~eQv~~L~a~ 59 (121)
=-|++|+|++.+.+ +|.| |.+..+..+++|+++.+ .|+|+.|+| .|+++|+.+|-.+
T Consensus 456 ~~l~~~~el~~ii~i~G~d~Ls~~dk~~l~~a~~i~~~fL~Q~~f~~~d~~~~~~kq~~~l~~i 519 (578)
T 3gqb_A 456 ELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMKMI 519 (578)
T ss_dssp HHHHHHHTTTTTTTTTTGGGCCHHHHHHHHHHHHHHHHHTCCCSSSTTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHhCCCCCCCCceecCCHHHHHHHHHHH
Confidence 35899999999999 8999 99999999999999985 999999998 8999999876654
No 17
>1cg5_B Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_B*
Probab=80.74 E-value=5 Score=27.47 Aligned_cols=91 Identities=7% Similarity=0.000 Sum_probs=54.5
Q ss_pred HHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCC---CCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhH
Q psy13777 13 AFAQFGSDLDAATQQLLNRGVRLTELLKQGQYV---PMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERG 89 (121)
Q Consensus 13 aFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~---P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~ 89 (121)
-|.+||.|++..+.+...+|+++...|-.---. .-+.-.++.-.++. -.|++++.+.+-..|+..|....
T Consensus 41 ~F~~~~~d~~~~~~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~-----~~V~p~~f~~~g~~Ll~~l~~~l-- 113 (141)
T 1cg5_B 41 LFSKLQGLFSANDIGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQE-----IGVDTQNFKLLGQTFMVELALHY-- 113 (141)
T ss_dssp TCGGGTTCCSTTSHHHHHHHHHHHHHHHHHHHTTTSHHHHTHHHHHHHHH-----HTCCTHHHHHHHHHHHHHHHHHH--
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHc--
Confidence 378887788887788889999987655321111 11122222223332 25677777777777776664332
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 90 LLESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 90 ~~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+..++++..+.-.++...+..
T Consensus 114 -------g~~~t~e~~~AW~k~~~~va~ 134 (141)
T 1cg5_B 114 -------KKTFRPKEHAAAYKFFRLVAE 134 (141)
T ss_dssp -------GGGCCHHHHHHHHHHHHHHHH
T ss_pred -------CCCCCHHHHHHHHHHHHHHHH
Confidence 234888887777776655443
No 18
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=76.62 E-value=9.8 Score=25.83 Aligned_cols=95 Identities=15% Similarity=0.232 Sum_probs=52.7
Q ss_pred HHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhHHHH
Q psy13777 13 AFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 92 (121)
Q Consensus 13 aFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~~~ 92 (121)
-|.+||.|++..+.+.-.+|.++...|-.---.-=.+...+. =.+-.+.---.|++++.+.+-..|+..+....
T Consensus 43 ~F~~~~~~~~~~~~~~~~h~~~v~~al~~~v~~ld~l~~~l~-~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~l----- 116 (144)
T 1spg_A 43 YFSEWGQDLGPQTPQVRNHGAVIMAAVGKAVKSIDNLVGGLS-QLSELHAFKLRVDPANFKILAHNIILVISMYF----- 116 (144)
T ss_dssp GGTTSCSCSSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHhHHhHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc-----
Confidence 367776578777777778888887655321110000111111 11111111136777777777777776664332
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 93 SIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 93 ~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+..++++..+.-.+++..+..
T Consensus 117 ----g~~~t~e~~~AW~k~~~~va~ 137 (144)
T 1spg_A 117 ----PGDFTPEVHLSVDKFLACLAL 137 (144)
T ss_dssp ----TTTCCHHHHHHHHHHHHHHHH
T ss_pred ----ccCCCHHHHHHHHHHHHHHHH
Confidence 345888888877777666544
No 19
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=65.69 E-value=19 Score=24.12 Aligned_cols=90 Identities=10% Similarity=0.118 Sum_probs=50.7
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcC---CCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhHH
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQG---QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL 90 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~---q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~ 90 (121)
|.+|+ |++..+.+.-.+|.+++..|-.- --...+.-.++.-.++. --.|++++.+.+-..|+..+....
T Consensus 43 F~~~~-~~~~~s~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~----~~~V~p~~f~~~~~~ll~~l~~~l--- 114 (142)
T 3d1k_A 43 FSHWP-DVTPGSPNIKAHGKKVMGGIALAVSKIDDLKTGLMELSEQHAY----KLRVDPSNFKILNHCILVVISTMF--- 114 (142)
T ss_dssp GTTSS-CCSTTCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----TSCCCGGGHHHHHHHHHHHHHHHC---
T ss_pred HHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----hcCCChHHHHHHHHHHHHHHHHHc---
Confidence 66665 67666666778888877654321 11111112222222222 125777777777777777665432
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 91 LESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 91 ~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+..++++..+.-.+++..+..
T Consensus 115 ------g~~~t~e~~~AW~~~~~~v~~ 135 (142)
T 3d1k_A 115 ------PKEFTPEAHVSLDKFLSGVAL 135 (142)
T ss_dssp ------TTTCCHHHHHHHHHHHHHHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHH
Confidence 345888887777777665544
No 20
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=65.51 E-value=21 Score=24.02 Aligned_cols=90 Identities=7% Similarity=0.198 Sum_probs=49.7
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcCC---CCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhHH
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQGQ---YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL 90 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q---~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~ 90 (121)
|.+|| |++..+.+.-.+|.++...|-.-- -...+.-.++.-.++. --.|++++.+.+-..|+..+....
T Consensus 44 F~~~~-~~~~~s~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~----~~~V~p~~f~~~~~~Ll~~l~~~l--- 115 (143)
T 3bom_A 44 FSHWA-SVAPGSAPVKKHGITIMNQIDDCVGHMDDLFGFLTKLSELHAT----KLRVDPTNFKILAHNLIVVIAAYF--- 115 (143)
T ss_dssp CTTSS-CCSTTCHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----TTCCCTTHHHHHHHHHHHHHHHHC---
T ss_pred HHHcC-CCCCCCHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH----HhCCCHhHHHHHHHHHHHHHHHHc---
Confidence 55665 666666666788888776553211 1111111222222222 125677777777777776664332
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 91 LESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 91 ~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+..++++..+.-.+++..+..
T Consensus 116 ------g~~~t~e~~~AW~~~~~~va~ 136 (143)
T 3bom_A 116 ------PAEFTPEIHLSVDKFLQQLAL 136 (143)
T ss_dssp ------TTTCCHHHHHHHHHHHHHHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHH
Confidence 345888887777776665543
No 21
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=65.25 E-value=28 Score=23.31 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=49.7
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCC---CCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhHH
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVP---MAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL 90 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P---~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~ 90 (121)
|.+|| |+++.+.+.-.+|.++...|-.---.- .+.-.++.-.++. --.|++++.+.+-..|+..+....
T Consensus 43 F~~f~-~~~~~n~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~----~~~V~p~~f~~~~~~ll~~l~~~l--- 114 (141)
T 1cg5_A 43 FSKFS-GFEACNEQVKKHGKRVMNALADATHHLDNLHLHLEDLARKHGE----NLLVDPHNFHLFADCIVVTLAVNL--- 114 (141)
T ss_dssp GTTCS-CCSTTSHHHHHHHHHHHHHHHHHTTCTTSHHHHHHHHHHHHHH----TTCCCTHHHHHHHHHHHHHHHHHS---
T ss_pred hHHhC-CCCCCCHhHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHHHHHHc---
Confidence 55665 666667777788888877665322111 1111111122221 125667777766666666554321
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 91 LESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 91 ~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+ .++++..+.-.++...+..
T Consensus 115 ------g-~~t~e~~~AW~k~~~~va~ 134 (141)
T 1cg5_A 115 ------Q-AFTPVTHCAVDKFLELVAY 134 (141)
T ss_dssp ------S-CCCHHHHHHHHHHHHHHHH
T ss_pred ------c-cCCHHHHHHHHHHHHHHHH
Confidence 3 5888887777777665544
No 22
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=60.50 E-value=35 Score=22.82 Aligned_cols=90 Identities=11% Similarity=0.104 Sum_probs=49.9
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcC---CCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhHH
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQG---QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL 90 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~---q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~ 90 (121)
|.+|| |+++.+.+.-.+|+++...|-.- --.+-+.-.++.-.++.. -.|++++.+.+-..|+..+....+
T Consensus 44 F~~~~-d~~~~n~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~~----~~V~p~~f~~~~~~ll~~l~~~lg-- 116 (143)
T 1xq5_A 44 FSHWK-DLSPGSAPVNKHGKTIMGGIVDAVASIDDLNAGLLALSELHAFT----LRVDPANFKILSHCILVLLAVKFP-- 116 (143)
T ss_dssp GTTCS-CCSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHTHHHHHHHHHT----SCCCTHHHHHHHHHHHHHHHHHCG--
T ss_pred HHHcC-CCCCCCHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHhh--
Confidence 56664 77766777788888887665421 111111112222222221 256777777777777766654332
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 91 LESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 91 ~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
..++++..+.-.+++..+..
T Consensus 117 -------~~~t~e~~~AW~k~~~~va~ 136 (143)
T 1xq5_A 117 -------KDFTPEVHISYDKFFSALAR 136 (143)
T ss_dssp -------GGCCHHHHHHHHHHHHHHHH
T ss_pred -------ccCCHHHHHHHHHHHHHHHH
Confidence 34788877776666655443
No 23
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=59.53 E-value=19 Score=24.24 Aligned_cols=72 Identities=10% Similarity=0.149 Sum_probs=40.5
Q ss_pred HHHhhcCCccH-----HHHHHHHhHHHHHHHhhcC---CCCCCCH---HHHHHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q psy13777 13 AFAQFGSDLDA-----ATQQLLNRGVRLTELLKQG---QYVPMAI---EEQVAVIYCGVRGHLDKLDPAKITTFEKEFLA 81 (121)
Q Consensus 13 aFaqFgSdLD~-----~Tk~~L~rG~rl~elLKQ~---q~~P~~~---~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~ 81 (121)
-|.+|+ |+++ .+.+.-.+|.++...|-.- --.|-.+ -.++.-.++.. -.|++++.+.+...|+.
T Consensus 51 ~F~~~~-~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ldd~~~l~~~l~~L~~~H~~~----~~V~p~~f~~~~~~Ll~ 125 (149)
T 2lhb_A 51 FFPKFK-GLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKS----FQVDPEYFKVLAAVIAD 125 (149)
T ss_dssp GCGGGT-TCCSHHHHHTCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT----SCCCGGGHHHHHHHHHH
T ss_pred Hhhhhc-CCCCHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc----cCCCHHHHHHHHHHHHH
Confidence 366665 6654 4556678888888744321 1111111 11122222221 36888888888888888
Q ss_pred HHHhchhH
Q psy13777 82 HIKSSERG 89 (121)
Q Consensus 82 ~l~~~~~~ 89 (121)
.+....++
T Consensus 126 ~l~~~lg~ 133 (149)
T 2lhb_A 126 TVAAGDAG 133 (149)
T ss_dssp HHHTTCHH
T ss_pred HHHHHcch
Confidence 88766554
No 24
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=59.49 E-value=21 Score=24.02 Aligned_cols=90 Identities=10% Similarity=0.149 Sum_probs=48.3
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcCC---CCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhHH
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQGQ---YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL 90 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q---~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~ 90 (121)
|.+|| |++..+.+.-.+|.++...|-.-- -...+.-.++.-.++.. -.|++++.+.+-..|+..+....
T Consensus 44 F~~f~-~~~~~~~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~~----~~V~p~~f~~~~~~Ll~~l~~~l--- 115 (143)
T 1out_A 44 FSHWA-DLSPGSGPVKKHGGIIMGAIGKAVGLMDDLVGGMSALSDLHAFK----LRVDPGNFKILSHNILVTLAIHF--- 115 (143)
T ss_dssp GTTSS-CCSTTCHHHHHHHHHHHHHHHHHHHTTTCHHHHTHHHHHHHHHT----TCCCTHHHHHHHHHHHHHHHHHC---
T ss_pred HHHcC-CCCCCCHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHHc---
Confidence 55665 666666677788888776553211 11111111111222211 25666776666666666554332
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 91 LESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 91 ~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+..++++..+.-.+++..+..
T Consensus 116 ------g~~~t~e~~~AW~k~~~~va~ 136 (143)
T 1out_A 116 ------PSDFTPEVHIAVDKFLAAVSA 136 (143)
T ss_dssp ------TTTCCHHHHHHHHHHHHHHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHH
Confidence 345888887777777665543
No 25
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=59.10 E-value=13 Score=23.46 Aligned_cols=31 Identities=16% Similarity=0.463 Sum_probs=26.9
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q psy13777 88 RGLLESIKKEGKITEDTDAKLKTVVTNFLAN 118 (121)
Q Consensus 88 ~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~ 118 (121)
.++++.|..+..++++.++.|.+...+|...
T Consensus 12 ~~Lv~~idp~~~ld~~vee~ll~lADdFV~~ 42 (76)
T 1h3o_B 12 QDLVREVDPNEQLDEDVEEMLLQIADDFIES 42 (76)
T ss_dssp HHHHHHHCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999998764
No 26
>3mkb_B Hemoglobin subunit beta; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2
Probab=57.15 E-value=42 Score=22.69 Aligned_cols=87 Identities=11% Similarity=0.086 Sum_probs=41.2
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhHHHHH
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLES 93 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~~~~ 93 (121)
|.+|| |+.. -.+|.|++..|-.---..=.+.. ++.-.+-....--.|++++.+.+-.-++..|....
T Consensus 42 F~~f~-dl~~-----~~hg~kv~~al~~~v~~lddl~~-~l~~L~~~H~~~l~V~p~~f~~lg~~Ll~~l~~~l------ 108 (136)
T 3mkb_B 42 FAKXX-XFSA-----SIHAAIVVGALQDAVKHEDDVKA-EFVNISKAHADKLHIDPGSFHLLTDSFIVELAHLK------ 108 (136)
T ss_dssp TCC----CCH-----HHHHHHHHHHHHHHHTTTTCHHH-HSHHHHHHHHHTSCCCGGGHHHHHHHHHHHHHHHH------
T ss_pred HHhhh-hhhh-----HHHHHHHHHHHHHHHhccchhhh-hhhhhhhhcccccccCCCceeeehhHHHHHHHHHH------
Confidence 55665 6665 56788776654322111111111 11111111111125666666666666666554332
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHH
Q psy13777 94 IKKEGKITEDTDAKLKTVVTNFL 116 (121)
Q Consensus 94 i~~~~~l~~~~~~~l~~~~~~~~ 116 (121)
+..++++..+...+++....
T Consensus 109 ---g~~ft~e~~~AW~k~~~~va 128 (136)
T 3mkb_B 109 ---KVAFTPFVFAVWIKFFQVVI 128 (136)
T ss_dssp ---GGGSCHHHHHHHHHHHHHHH
T ss_pred ---hhccchhHHHHHHHHHHHHH
Confidence 24488887777766665543
No 27
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=56.95 E-value=30 Score=23.25 Aligned_cols=87 Identities=11% Similarity=0.173 Sum_probs=49.8
Q ss_pred HHhhcCCccH----HHHHHHHhHHHHHHHhhcC---CCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhc
Q psy13777 14 FAQFGSDLDA----ATQQLLNRGVRLTELLKQG---QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 86 (121)
Q Consensus 14 FaqFgSdLD~----~Tk~~L~rG~rl~elLKQ~---q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~ 86 (121)
|.+|| |+++ .+.+.-.+|.++...|-.- --.|-+.-.++.-.++.. -.|+++..+.+...|+..+...
T Consensus 40 F~~f~-~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~~l~~L~~~H~~k----~~V~p~~f~~~~~~Ll~~l~~~ 114 (147)
T 2nrl_A 40 FPKFA-GIAQADIAGNAAVSAHGATVLKKLGELLKAKGSHAAILKPLANSHATK----HKIPINNFKLISEVLVKVMQEK 114 (147)
T ss_dssp CTTTT-TCCGGGTTTCHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHT----TCCCTHHHHHHHHHHHHHHHHH
T ss_pred hhhhc-CCCHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHh
Confidence 55664 5565 5666778888887655331 111212222222333321 2578888888888887766422
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy13777 87 ERGLLESIKKEGKITEDTDAKLKTVVTNFL 116 (121)
Q Consensus 87 ~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~ 116 (121)
..++++..+.-.+++..+.
T Consensus 115 -----------~~~t~e~~~AW~~~~~~v~ 133 (147)
T 2nrl_A 115 -----------AGLDAGGQTALRNVMGIII 133 (147)
T ss_dssp -----------SCCCHHHHHHHHHHHHHHH
T ss_pred -----------ccCCHHHHHHHHHHHHHHH
Confidence 4588887776666655443
No 28
>2r80_B Hemoglobin subunit beta; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3dhr_B* 3mju_B* 1faw_B* 3k8b_B* 2qmb_B* 3eok_B* 1a4f_B* 1c40_B* 1hv4_B* 2zfb_B* 3mjp_B* 1hbr_B* 3fs4_B* 3a59_B* 1wmu_B* 1v75_B* 2z6n_B* 3at5_B* 3at6_B*
Probab=54.49 E-value=45 Score=22.27 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=53.4
Q ss_pred HHHhhcCCccH-----HHHHHHHhHHHHHHHhhcC---CCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHH
Q psy13777 13 AFAQFGSDLDA-----ATQQLLNRGVRLTELLKQG---QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIK 84 (121)
Q Consensus 13 aFaqFgSdLD~-----~Tk~~L~rG~rl~elLKQ~---q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~ 84 (121)
-|.+|| |+++ .+.+.-.+|.+++..|-.- --.+-+.-.++.-.++.. -.|++++.+.+...++..+.
T Consensus 41 ~F~~f~-~~~~~~~l~~n~~~~~h~~~v~~~l~~~v~~ld~l~~~l~~L~~~H~~~----~~V~p~~f~~~~~~ll~~l~ 115 (146)
T 2r80_B 41 FFSSFG-NLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDK----LHVDPENFRLLGDILVIILA 115 (146)
T ss_dssp GGGGGC-CCSSHHHHHHCHHHHHHHHHHHHHHHHHHHTTTCHHHHTHHHHHHHHHT----SCCCTHHHHHHHHHHHHHHH
T ss_pred HHHHhc-CCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHH
Confidence 377775 7765 6677788999887665421 111111112222222221 36778888888888877765
Q ss_pred hchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 85 SSERGLLESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 85 ~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
... +..++++..+.-.+++..+..
T Consensus 116 ~~l---------g~~~t~e~~~AW~~~~~~va~ 139 (146)
T 2r80_B 116 AHF---------GKDFTPECQAAWQKLVRVVAH 139 (146)
T ss_dssp HHH---------GGGSCHHHHHHHHHHHHHHHH
T ss_pred HHc---------cccCCHHHHHHHHHHHHHHHH
Confidence 432 234788877777777665544
No 29
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=52.34 E-value=26 Score=23.61 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=51.1
Q ss_pred HHHhhcCCccH--HHHHHHHhHHHHHHHhhcCC---CCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhch
Q psy13777 13 AFAQFGSDLDA--ATQQLLNRGVRLTELLKQGQ---YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSE 87 (121)
Q Consensus 13 aFaqFgSdLD~--~Tk~~L~rG~rl~elLKQ~q---~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~ 87 (121)
-|.+|| |++. .+.+.-.+|+++...|-.-- -.|-.+... +-=.+-.+.- -.|++++...+...|+..+....
T Consensus 52 ~F~~f~-~~~~~~~n~~~~~h~~~v~~al~~~v~~ld~~~~l~~~-l~~L~~~H~~-~~V~p~~f~~~~~~Ll~~l~~~l 128 (151)
T 1sct_B 52 KFARLG-DVSAGKDNSKLRGHSITLMYALQNFVDALDDVERLKCV-VEKFAVNHIN-RQISADEFGEIVGPLRQTLKARM 128 (151)
T ss_dssp HTGGGC-CGGGGGGCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH-HHHHHHHHHH-TTCCHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHhC-CCCCccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHh
Confidence 466665 6664 66777788888887664321 111111111 1111111111 36777877777777777665432
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy13777 88 RGLLESIKKEGKITEDTDAKLKTVVTNFL 116 (121)
Q Consensus 88 ~~~~~~i~~~~~l~~~~~~~l~~~~~~~~ 116 (121)
+..++++..+.-.+++..+.
T Consensus 129 ---------g~~~t~e~~~AW~~~~~~va 148 (151)
T 1sct_B 129 ---------GNYFDEDTVAAWASLVAVVQ 148 (151)
T ss_dssp ---------GGGCCHHHHHHHHHHHHHHH
T ss_pred ---------cccCCHHHHHHHHHHHHHHH
Confidence 23478888777777766554
No 30
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=51.53 E-value=29 Score=23.50 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=49.0
Q ss_pred HHhhcCCccH-----HHHHHHHhHHHHHHHhhc---CCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHh
Q psy13777 14 FAQFGSDLDA-----ATQQLLNRGVRLTELLKQ---GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKS 85 (121)
Q Consensus 14 FaqFgSdLD~-----~Tk~~L~rG~rl~elLKQ---~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~ 85 (121)
|.+|| |+++ .+.+.-.+|.+++..|-. .--.|-+.-.++.-.++.. -.|++++.+.+...|+..+..
T Consensus 43 F~~f~-~~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~~l~~L~~~H~~k----~~V~p~~f~~~~~~Ll~~l~~ 117 (153)
T 1lhs_A 43 FAKFK-NLTTIDALKSSEEVKKHGTTVLTALGRILKQKNNHEQELKPLAESHATK----HKIPVKYLEFICEIIVKVIAE 117 (153)
T ss_dssp CGGGT-TCCSHHHHHTCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHH
T ss_pred hHhhc-CCCcHHHHcCCHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhhhc----cCCCHHHHHHHHHHHHHHHHH
Confidence 56664 4422 456667888888766532 1122223333333333321 256777777777777776654
Q ss_pred chhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy13777 86 SERGLLESIKKEGKITEDTDAKLKTVVTNFL 116 (121)
Q Consensus 86 ~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~ 116 (121)
.. +..++++..+.-.+++..+.
T Consensus 118 ~l---------g~~~t~e~~~AW~k~~~~va 139 (153)
T 1lhs_A 118 KH---------PSDFGADSQAAMKKALELFR 139 (153)
T ss_dssp HC---------TTTSCHHHHHHHHHHHHHHH
T ss_pred Hc---------cccCCHHHHHHHHHHHHHHH
Confidence 32 24578877776666655443
No 31
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=50.06 E-value=36 Score=22.57 Aligned_cols=89 Identities=15% Similarity=0.234 Sum_probs=49.2
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcC---CCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhHH
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQG---QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL 90 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~---q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~ 90 (121)
|.+| |++..+...-.+|+++...|-.- .-.+-+.-.++.-.++.. -.|+++..+.+...|+..+....
T Consensus 43 F~~~--d~~~~~~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~~----~gV~p~~f~~~~~~Ll~~l~~~l--- 113 (141)
T 2w72_C 43 FPHF--DLSHGSAQVKGQGKKVADALTNAVAHVDDMPNALSALSDLHAHK----LRVDPVNFKLLSHCLLVTLAAHL--- 113 (141)
T ss_dssp CTTS--CCSTTCHHHHHHHHHHHHHHHHHHHTTTSHHHHTHHHHHHHHHT----TCCCTHHHHHHHHHHHHHHHHHC---
T ss_pred HHhC--CCCCCCHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHhHHh----cCCCHHHHHHHHHHHHHHHHHHc---
Confidence 4444 66666667778888877665432 111111112222222221 25777777777777777664332
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 91 LESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 91 ~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+..++++..+.-.++...+..
T Consensus 114 ------g~~~t~e~~~AW~~~~~~i~~ 134 (141)
T 2w72_C 114 ------PAEFTPAVHASLDKFLASVST 134 (141)
T ss_dssp ------TTTCCHHHHHHHHHHHHHHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHH
Confidence 345888877777766665543
No 32
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=49.41 E-value=56 Score=21.83 Aligned_cols=85 Identities=7% Similarity=0.064 Sum_probs=44.8
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHH---HHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhHH
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIE---EQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL 90 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~---eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~ 90 (121)
|.+|| |++.. .+|+++...|-.---..=.+. .++.-.++.. -.|++++.+.+-..|+..|....
T Consensus 42 F~~f~-d~~~~-----~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~k----~~V~p~~f~~~~~~Ll~~l~~~l--- 108 (136)
T 1gcv_B 42 FQKRT-DFRSS-----IHAGIVVGALQDAVKHMDDVKTLFKDLSKKHADD----LHVDPGSFHLLTDCIIVELAYLR--- 108 (136)
T ss_dssp TTTCT-TCCHH-----HHHHHHHHHHHHHHHTTTCHHHHTHHHHHHHHHT----TCCCGGGHHHHHHHHHHHHHHHH---
T ss_pred hhccc-CCCcc-----HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhHHh----hCCCHHHHHHHHHHHHHHHHHHc---
Confidence 56665 77653 788887765532111110111 1112222221 25677777777777766654332
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 91 LESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 91 ~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+..++++..+.-.++...+..
T Consensus 109 ------g~~~t~e~~~AW~k~~~~va~ 129 (136)
T 1gcv_B 109 ------KDCFTPHIQGIWDKFFEVVID 129 (136)
T ss_dssp ------GGGSCHHHHHHHHHHHHHHHH
T ss_pred ------ccCCCHHHHHHHHHHHHHHHH
Confidence 234888887777776665543
No 33
>1eca_A Erythrocruorin (AQUO Met); oxygen transport; HET: HEM; 1.40A {Chironomus thummi thummi} SCOP: a.1.1.2 PDB: 1ecd_A* 1ecn_A* 1eco_A*
Probab=49.09 E-value=33 Score=22.92 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=39.7
Q ss_pred HHhhcC-CccH--HHHHHHHhHHHHHHHh----hcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhc
Q psy13777 14 FAQFGS-DLDA--ATQQLLNRGVRLTELL----KQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 86 (121)
Q Consensus 14 FaqFgS-dLD~--~Tk~~L~rG~rl~elL----KQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~ 86 (121)
|.+||. |+++ .+.+.-.||.|++..| ++- -...+.-.+..-.++ . -.|+++..+.+...++..+...
T Consensus 38 F~~f~~~~~~~~~~~~~~~~Hg~~V~~~l~~~v~~l-~~l~~~l~~L~~~H~----~-~~V~p~~F~~l~~~ll~~l~~~ 111 (136)
T 1eca_A 38 FTQFAGKDLESIKGTAPFETHANRIVGFFSKIIGEL-PNIEADVNTFVASHK----P-RGVTHDQLNNFRAGFVSYMKAH 111 (136)
T ss_dssp CTTTTTSCHHHHTTSHHHHHHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHG----G-GTCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhhh----c-CCCCHHHHHHHHHHHHHHHHHH
Confidence 677753 5554 4467788999987654 422 111112222222232 2 2588898888888888877654
Q ss_pred h
Q psy13777 87 E 87 (121)
Q Consensus 87 ~ 87 (121)
.
T Consensus 112 ~ 112 (136)
T 1eca_A 112 T 112 (136)
T ss_dssp S
T ss_pred c
Confidence 3
No 34
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=49.00 E-value=15 Score=25.10 Aligned_cols=71 Identities=8% Similarity=-0.043 Sum_probs=37.3
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHH-HhhCCC-CCCChhHHHHHHHHHHHHHHh
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYC-GVRGHL-DKLDPAKITTFEKEFLAHIKS 85 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a-~~~g~l-d~i~~~~v~~f~~~l~~~l~~ 85 (121)
|.+|+ |+++.+.+.-.+|.|++..|-.---.-=..+.-...|-- +....- -.|++++.+.+...|+..|..
T Consensus 53 F~~~~-~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~lgV~p~~f~~~~~~ll~~l~~ 125 (151)
T 1x9f_A 53 FERVK-IDEPESGEFKSHLVRVANGLKLLINLLDDTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFARVLPQ 125 (151)
T ss_dssp GTTTT-TTSTTSSHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhccc-CCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHH
Confidence 55554 676666677788888876665422211111111111111 112222 267777777777777776643
No 35
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=48.53 E-value=24 Score=23.75 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=48.3
Q ss_pred HHhhcCCccH--HHHHHHHhHHHHHHHhhcCC---CCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchh
Q psy13777 14 FAQFGSDLDA--ATQQLLNRGVRLTELLKQGQ---YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSER 88 (121)
Q Consensus 14 FaqFgSdLD~--~Tk~~L~rG~rl~elLKQ~q---~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~ 88 (121)
|.+|| |++. .+.+.-.+|+++...|-.-- -.|-.+... +-=.+-.+.- -.|+++..+.+...|+..+....
T Consensus 52 F~~~~-d~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~-l~~L~~~H~~-~gV~p~~f~~~~~~ll~~l~~~l- 127 (150)
T 1sct_A 52 FTRLG-DVQKGKANSKLRGHAITLTYALNNFVDSLDDPSRLKCV-VEKFAVNHIN-RKISGDAFGAIVEPMKETLKARM- 127 (150)
T ss_dssp GCTTC-CGGGGGGSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH-HHHHHHHHHH-TTCCHHHHGGGHHHHHHHHHHHH-
T ss_pred HHHhC-CCCCcccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHh-
Confidence 55554 4543 56677778888876654321 111111111 1111111111 26777777777777777665432
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy13777 89 GLLESIKKEGKITEDTDAKLKTVVTNFL 116 (121)
Q Consensus 89 ~~~~~i~~~~~l~~~~~~~l~~~~~~~~ 116 (121)
+..++++..+.-.+++..+.
T Consensus 128 --------g~~~t~e~~~AW~k~~~~va 147 (150)
T 1sct_A 128 --------GNYYSDDVAGAWAALVGVVQ 147 (150)
T ss_dssp --------GGGCCHHHHHHHHHHHHHHH
T ss_pred --------cccCCHHHHHHHHHHHHHHH
Confidence 23478888777777766554
No 36
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=45.83 E-value=8.3 Score=24.73 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=39.6
Q ss_pred CCCChhHHHHHHHHHHHHHHhchhHH----------HHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 65 DKLDPAKITTFEKEFLAHIKSSERGL----------LESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 65 d~i~~~~v~~f~~~l~~~l~~~~~~~----------~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
..+|...+...+.+|.+++...+|+. ...++-.+ .+++.++.+.+++++..+
T Consensus 11 ~~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr~~s~n~lsV~g-~~k~dKe~i~eiLqE~we 72 (81)
T 1ghh_A 11 SPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIG-ATKEDKQRISEILQETWE 72 (81)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEEEESSCEEEEES-CCHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHhhCCCCCceEEEeecCCCceeecC-CChhHHHHHHHHHHHHHh
Confidence 47888999999999999999999986 22333233 345678888888888755
No 37
>1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2 PDB: 1kfr_A*
Probab=44.66 E-value=69 Score=21.52 Aligned_cols=90 Identities=11% Similarity=0.077 Sum_probs=52.7
Q ss_pred HHHhhcCCccH----HHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHH--HHHhhCCCCCCChhHHHHHHHHHHHHHHhc
Q psy13777 13 AFAQFGSDLDA----ATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVI--YCGVRGHLDKLDPAKITTFEKEFLAHIKSS 86 (121)
Q Consensus 13 aFaqFgSdLD~----~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L--~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~ 86 (121)
-|.+|| |++. .+.+.-.+|+|+...|-.---.-=..+.-...| .+-.+-- -.|++++.+.+-..|+..|...
T Consensus 45 ~F~~~~-~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~-~~V~p~~f~~~~~~Ll~~l~~~ 122 (147)
T 1h97_A 45 HFSRLE-GHTIENVMQSEGIKHYARTLTEAIVHMLKEISNDAEVKKIAAQYGKDHTS-RKVTKDEFMSGEPIFTKYFQNL 122 (147)
T ss_dssp GSGGGT-TCCTTTGGGSHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHTTTT-SSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhc-CCCHHHHhcCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHc
Confidence 366774 4444 356677899998876655322211211111111 2222222 3789999888888888777432
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy13777 87 ERGLLESIKKEGKITEDTDAKLKTVVTNFL 116 (121)
Q Consensus 87 ~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~ 116 (121)
.++++..+.-.++...+.
T Consensus 123 ------------~~t~e~~~AW~k~~~~va 140 (147)
T 1h97_A 123 ------------VKDAEGKAAVEKFLKHVF 140 (147)
T ss_dssp ------------SSSHHHHHHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHHH
Confidence 478888777777665543
No 38
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=42.01 E-value=77 Score=21.28 Aligned_cols=92 Identities=15% Similarity=0.127 Sum_probs=46.0
Q ss_pred HHHhhcCCccH--HHHHHHHhHHHHHHHhhcC---CCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhch
Q psy13777 13 AFAQFGSDLDA--ATQQLLNRGVRLTELLKQG---QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSE 87 (121)
Q Consensus 13 aFaqFgSdLD~--~Tk~~L~rG~rl~elLKQ~---q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~ 87 (121)
-|.+|| |++. .+.+...||.+++..|-.- --.|-.+... +--.+-.+ .--.|+++..+.+...|+..+....
T Consensus 53 ~F~~f~-~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd~~~l~~~-l~~L~~~H-~~~gV~p~~f~~~~~~Ll~~l~~~l 129 (152)
T 4hrt_B 53 KFARLG-DVSAGKDNSKLRGHSITLMYALQNFVDALDDVERLKCV-VEKFAVNH-INRQISADEFGEIVGPLRQTLKARM 129 (152)
T ss_dssp HTGGGC-CCC---CCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH-HHHHHHHH-HC-CCCHHHHGGGHHHHHHHHHHHH
T ss_pred hhHHhC-CCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHH-hhCCCCHHHHHHHHHHHHHHHHHHh
Confidence 355564 5555 5566778888887766422 1111111111 11111112 2225666666666666666554332
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy13777 88 RGLLESIKKEGKITEDTDAKLKTVVTNFL 116 (121)
Q Consensus 88 ~~~~~~i~~~~~l~~~~~~~l~~~~~~~~ 116 (121)
+..++++..+.-.++...+.
T Consensus 130 ---------g~~~t~e~~~AW~k~~~~va 149 (152)
T 4hrt_B 130 ---------GNYFDEDTVAAWASLVAVVQ 149 (152)
T ss_dssp ---------GGGCCHHHHHHHHHHHHHHH
T ss_pred ---------cccCCHHHHHHHHHHHHHHH
Confidence 23478887777766665443
No 39
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=41.88 E-value=57 Score=23.05 Aligned_cols=83 Identities=11% Similarity=0.052 Sum_probs=43.1
Q ss_pred HHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHh--hCCCCCCChhHHHHHHHHHHHHHHhchhHHHHHHHhcCCCC
Q psy13777 24 ATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV--RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKIT 101 (121)
Q Consensus 24 ~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~--~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~~~~i~~~~~l~ 101 (121)
.+.+.-.+|.++...|-.---.-=..+.-...|--+. +..--.|+++....+...|+..|....+ ..++
T Consensus 77 ~n~~~~~h~~~v~~al~~~v~~Ldd~~~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~~lg---------~~~t 147 (193)
T 2dc3_A 77 RSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFA---------SDFP 147 (193)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHTG---------GGCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh---------ccCC
Confidence 4566677888887665432111111111111111111 1112367888888888888877755432 2367
Q ss_pred HHHHHHHHHHHHHH
Q psy13777 102 EDTDAKLKTVVTNF 115 (121)
Q Consensus 102 ~~~~~~l~~~~~~~ 115 (121)
++..+.-.+++..+
T Consensus 148 ~e~~~AW~k~~~~v 161 (193)
T 2dc3_A 148 PETQRAWAKLRGLI 161 (193)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77666555554443
No 40
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=41.84 E-value=14 Score=25.00 Aligned_cols=72 Identities=11% Similarity=0.043 Sum_probs=38.1
Q ss_pred HHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH-hhCCC-CCCChhHHHHHHHHHHHHHHh
Q psy13777 13 AFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG-VRGHL-DKLDPAKITTFEKEFLAHIKS 85 (121)
Q Consensus 13 aFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~-~~g~l-d~i~~~~v~~f~~~l~~~l~~ 85 (121)
-|.+|+ |+++.+.+.-.+|++++..|-.---.-=..+.-...|--+ ....- -.|+++..+.+...|+..+..
T Consensus 50 ~F~~~~-~~~~~~~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~ 123 (148)
T 1yhu_C 50 LFTRVN-VADINSPEFQGHVVRVMGGLDILINALDDIPTLESMLDHLAGQHAVRDGVTGAGFQLMATVLMESLPQ 123 (148)
T ss_dssp GSGGGT-GGGTTSHHHHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHTSTTCCTTHHHHHHHHHHHHHHH
T ss_pred hccccC-CCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHH
Confidence 366665 6666677778888888766543211100111111111111 11111 267888888888888777654
No 41
>2vyw_A Hemoglobin; trematode, oxygen binding; HET: HEM; 1.8A {Fasciola hepatica}
Probab=41.59 E-value=75 Score=21.36 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=49.4
Q ss_pred HHhhcCCccH----HHHHHHHhHHHHHHHhhcCCCCCCCHHH--HHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhch
Q psy13777 14 FAQFGSDLDA----ATQQLLNRGVRLTELLKQGQYVPMAIEE--QVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSE 87 (121)
Q Consensus 14 FaqFgSdLD~----~Tk~~L~rG~rl~elLKQ~q~~P~~~~e--Qv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~ 87 (121)
|.+|+ |++. .+.+.-.+|+|+...|-.---.-=..+. -.+-=.+-.+-- -.|++++.+.+-..|+..|...
T Consensus 47 F~~~~-~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~-~~V~p~~f~~~~~~Ll~~l~~~- 123 (148)
T 2vyw_A 47 FSKLQ-GLTKDNVGQSEGIRYYGRTLGEELIRLLKAASNPSVLEERIVQGAKDHKA-RPVTKDQFTGAAPIFIKFFQGL- 123 (148)
T ss_dssp SGGGT-TCCTTTGGGCSHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-SSCCHHHHHHTHHHHHHHHHHH-
T ss_pred hhhhc-CCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHc-
Confidence 66664 4443 4455667888887655432111111111 111112222223 3788888888888887766432
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 88 RGLLESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 88 ~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
.++++..+.-.++...+..
T Consensus 124 -----------~~t~e~~~AW~k~~~~va~ 142 (148)
T 2vyw_A 124 -----------LKKQEDKDAIEKFLLHVMQ 142 (148)
T ss_dssp -----------CCSHHHHHHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHHHH
Confidence 5788887777777665543
No 42
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=41.28 E-value=38 Score=22.73 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHH--HHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhc
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQ--VAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 86 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQ--v~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~ 86 (121)
|.+|+ |+++.+.+.-.+|.|++..|-.---.-=....- .+-=.+-.+-- -.|++++.+.+-..|+..|...
T Consensus 46 F~~~~-~~~~~s~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~-~gV~p~~f~~~~~~ll~~l~~~ 118 (145)
T 1yhu_A 46 FESVN-SKDMASPEFKAHIARVLGGLDRVISMLDNQATLDADLAHLKSQHDP-RTIDPVNFVVFRKALIATVAGT 118 (145)
T ss_dssp GGGGT-TTSTTSHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHGG-GCCCTHHHHHHHHHHHHHHHHH
T ss_pred hhhcc-cCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHH
Confidence 66665 566666777788888887664322111111111 11111222222 3788888888888888777543
No 43
>3mkb_A Hemoglobin subunit alpha; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2 PDB: 1gcv_A* 1gcw_A*
Probab=40.66 E-value=44 Score=22.55 Aligned_cols=91 Identities=11% Similarity=0.170 Sum_probs=47.3
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhHHHHH
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLES 93 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~~~~ 93 (121)
|.+| |+++.+.+.-.||.|++..|-.---..=.+. -++-=.+-....--.|++++.+.+-..|+..|....
T Consensus 43 F~~~--~~~~~s~~~~aHg~~v~~al~~~v~~ld~l~-~~l~~L~~~H~~~l~V~p~~f~~l~~~Ll~~l~~~l------ 113 (140)
T 3mkb_A 43 FDYA--DYSAAGAKVQLHGGKVIRAVVSAAEHDDDLH-AHLMVLAVTHGKKLLVDPSNFPMLSECILVTLATHL------ 113 (140)
T ss_dssp CCCS--CCSTTCHHHHHHHHHHHHHHHHHHTTTTTHH-HHTHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHC------
T ss_pred Cccc--cCCCCCHHHHHHHHHHHHHHHHHHHChhhHH-HHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHc------
Confidence 5566 7777777778888888766543111111111 111111111111124556666655555555443221
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 94 IKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 94 i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+ .++++..+.-.+++..+..
T Consensus 114 ---g-~ft~ev~~AW~k~~~~va~ 133 (140)
T 3mkb_A 114 ---A-EFSPATHCAVDKLLSAISS 133 (140)
T ss_dssp ---S-CCCHHHHHHHHHHHHHHHH
T ss_pred ---C-cCCHHHHHHHHHHHHHHHH
Confidence 3 6888888877777665543
No 44
>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_B*
Probab=39.43 E-value=84 Score=21.01 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=50.8
Q ss_pred HHhhcCCccH-----HHHHHHHhHHHHHHHhhcC---CCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHh
Q psy13777 14 FAQFGSDLDA-----ATQQLLNRGVRLTELLKQG---QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKS 85 (121)
Q Consensus 14 FaqFgSdLD~-----~Tk~~L~rG~rl~elLKQ~---q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~ 85 (121)
|.+|| |+++ .+.+.-.+|.++...|-.- --...+.-.++.-.++.. -.|++++.+.+-..|+..+..
T Consensus 42 F~~f~-d~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~k----~~V~p~~f~~~~~~Ll~~l~~ 116 (146)
T 1out_B 42 FGSFG-NVSTPAAIMGNPKVAAHGKVVCGALDKAVKNMGNILATYKSLSETHANK----LFVDPDNFRVLADVLTIVIAA 116 (146)
T ss_dssp CGGGC-CCSSHHHHHHCHHHHHHHHHHHHTHHHHHHTTTCHHHHTHHHHHHHHHT----TCCCTHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCCcHHHhccCHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHh----cCCCHHHHHHHHHHHHHHHHH
Confidence 77776 5542 4566788898887654321 111111111222222221 257778888777777776654
Q ss_pred chhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 86 SERGLLESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 86 ~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
.. +..++++..+.-.+++..+..
T Consensus 117 ~l---------g~~~t~e~~~AW~k~~~~va~ 139 (146)
T 1out_B 117 KF---------GASFTPEIQATWQKFMKVVVA 139 (146)
T ss_dssp HH---------GGGSCHHHHHHHHHHHHHHHH
T ss_pred Hh---------hccCCHHHHHHHHHHHHHHHH
Confidence 32 234888887777777665544
No 45
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=38.62 E-value=62 Score=21.73 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=42.9
Q ss_pred HHHHHHhHHHHHHHhhcC---CCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhHHHHHHHhcCCCC
Q psy13777 25 TQQLLNRGVRLTELLKQG---QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKIT 101 (121)
Q Consensus 25 Tk~~L~rG~rl~elLKQ~---q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~~~~i~~~~~l~ 101 (121)
+.+.-.+|.+++..|-.- --.|-+.-.++.-.++.. -.|++++.+.+...|+..+....+ ..++
T Consensus 58 ~~~~~~h~~~v~~al~~~v~~ld~~~~~l~~L~~~H~~~----~~V~p~~f~~~~~~Ll~~l~~~lg---------~~~t 124 (151)
T 1a6m_A 58 SEDLKKHGVTVLTALGAILKKKGHHEAELKPLAQSHATK----HKIPIKYLEFISEAIIHVLHSRHP---------GDFG 124 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHCG---------GGCS
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHcc---------ccCC
Confidence 345567788777654321 112213333333333321 257788888777777776654432 2477
Q ss_pred HHHHHHHHHHHHHHH
Q psy13777 102 EDTDAKLKTVVTNFL 116 (121)
Q Consensus 102 ~~~~~~l~~~~~~~~ 116 (121)
++..+.-.+++..+.
T Consensus 125 ~e~~~AW~k~~~~v~ 139 (151)
T 1a6m_A 125 ADAQGAMNKALELFR 139 (151)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666666555443
No 46
>2w72_B Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7w_B* 1qi8_B* 1j7y_B* 1dxu_B* 1a0u_B* 1a0z_B* 1gli_B* 1j7s_B* 1o1l_B* 1o1n_B* 1y0t_B* 1y0w_B* 1o1o_B* 1ye2_B* 1y35_B* 1y22_B* 1ye0_B* 1dxt_B* 1y5f_B* 1ird_B* ...
Probab=38.18 E-value=87 Score=20.80 Aligned_cols=93 Identities=15% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHhhcCCccH-----HHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchh
Q psy13777 14 FAQFGSDLDA-----ATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSER 88 (121)
Q Consensus 14 FaqFgSdLD~-----~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~ 88 (121)
|.+|| |+++ .+.+.-.+|.++...|-.---..=.+...+.- .+-.+.---.|++++.+.+-..|+..+....
T Consensus 42 F~~f~-~~~~~~~l~~n~~~~~h~~~v~~~l~~~v~~ld~l~~~l~~-L~~~H~~k~~V~p~~f~~~~~~Ll~~l~~~l- 118 (146)
T 2w72_B 42 FESFG-DLSTPDAVMGNPKVKAQGKKVLGAFSDGLAHLDNLKGTFAT-LSELHCDKLHVDPENFRLLGNVLVCVLAHHF- 118 (146)
T ss_dssp CTTSC-CCSSHHHHHHCHHHHHHHHHHHHHHHHHTTCTTCHHHHHHH-HHHHHHHTSCCCTHHHHHHHHHHHHHHHHHH-
T ss_pred hHhhc-CCCcHHHHccCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHhhhccCCChHHHHHHHHHHHHHHHHHc-
Confidence 55554 5542 56677889999887665333222222221111 1111111136788888888887777665432
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 89 GLLESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 89 ~~~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+..++++..+.-.+++..+..
T Consensus 119 --------g~~~t~e~~~AW~~~~~~va~ 139 (146)
T 2w72_B 119 --------GKEFTPPVQAAYQKVVAGVAN 139 (146)
T ss_dssp --------GGGSCHHHHHHHHHHHHHHHH
T ss_pred --------cccCCHHHHHHHHHHHHHHHH
Confidence 234788877777666655443
No 47
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=36.78 E-value=90 Score=20.56 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=49.7
Q ss_pred HHhhcCCccHH----HHHHHHhHHHHHHHhh---cCCCCC---CCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHH
Q psy13777 14 FAQFGSDLDAA----TQQLLNRGVRLTELLK---QGQYVP---MAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHI 83 (121)
Q Consensus 14 FaqFgSdLD~~----Tk~~L~rG~rl~elLK---Q~q~~P---~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l 83 (121)
|.+|+ +++.. +...-.+|.|+...|- ..--.| .+.-.++.-.++ .. .|+++..+.+...|+..+
T Consensus 44 F~~~~-~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~~H~-~~----gV~p~~f~~~~~~ll~~l 117 (147)
T 1mba_A 44 FADFK-GKSVADIKASPKLRDVSSRIFTRLNEFVNNAANAGKMSAMLSQFAKEHV-GF----GVGSAQFENVRSMFPGFV 117 (147)
T ss_dssp CTTTT-TCCHHHHHTCTTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HT----TCCHHHHHHHHHHHHHHH
T ss_pred hHhhc-CCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh-cC----CCCHHHHHHHHHHHHHHH
Confidence 55554 44542 2345678888777652 222233 233333344444 22 478888888888887766
Q ss_pred HhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 84 KSSERGLLESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 84 ~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
... ..++++..+.-.+++..+..
T Consensus 118 ~~~-----------~~~t~e~~~AW~~~~~~va~ 140 (147)
T 1mba_A 118 ASV-----------AAPPAGADAAWTKLFGLIID 140 (147)
T ss_dssp HTT-----------SCCCTTHHHHHHHHHHHHHH
T ss_pred HHh-----------cCCCHHHHHHHHHHHHHHHH
Confidence 432 45788777776666655543
No 48
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=36.58 E-value=90 Score=20.52 Aligned_cols=89 Identities=13% Similarity=0.216 Sum_probs=49.1
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcCC---CCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhHH
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQGQ---YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL 90 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q---~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~ 90 (121)
|.+| |+++.+...-.+|+++...|-.-- -.+-+.-.++.-.++. --.|+++..+.+...|+..+....
T Consensus 44 F~~~--~~~~~s~~~~~h~~~v~~~l~~~v~~ld~l~~~l~~L~~~H~~----k~~V~p~~f~~~~~~ll~~l~~~l--- 114 (142)
T 1jeb_A 44 FPHF--DLHPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAY----ILRVDPVNFKLLSHCLLVTLAARF--- 114 (142)
T ss_dssp CTTS--CCSTTCHHHHHHHHHHHHHHHHHHHTTTCHHHHTHHHHHHHHH----TSCCCTHHHHHHHHHHHHHHHHHC---
T ss_pred HHHC--CCCCCCHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHhhhh----ccCCCHHHHHHHHHHHHHHHHHHc---
Confidence 5555 666655667778888776553311 1111111122222221 135777777777777777665432
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 91 LESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 91 ~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+..++++..+.-.+++..+..
T Consensus 115 ------g~~~t~e~~~AW~~~~~~v~~ 135 (142)
T 1jeb_A 115 ------PADFTAEAHAAWDKFLSVVSS 135 (142)
T ss_dssp ------TTTCCHHHHHHHHHHHHHHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHH
Confidence 345788877776666655443
No 49
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=36.22 E-value=91 Score=20.50 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=49.8
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcCC---CCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhHH
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQGQ---YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL 90 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q---~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~~ 90 (121)
|.+| |+++.+...-.+|+++...|-.-- -.+-+.-.++.-.++.. -.|+++..+.+...|+..+....
T Consensus 43 F~~~--~~~~~s~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~~----~~V~p~~f~~~~~~ll~~l~~~l--- 113 (141)
T 1wmu_A 43 FPHF--DLHHDSEQIRHHGKKVVGALGDAVKHIDNLSATLSELSNLHAYN----LRVDPVNFKLLSHCFQVVLGAHL--- 113 (141)
T ss_dssp CTTS--CCSTTCHHHHHHHHHHHHHHHHHHHTTTSHHHHTHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred HHhC--CCCCCCHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHHc---
Confidence 4555 676666677788888776554311 11111111222222221 35778888877777777665432
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 91 LESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 91 ~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+..++++..+.-.+++..+..
T Consensus 114 ------g~~~t~e~~~AW~~~~~~v~~ 134 (141)
T 1wmu_A 114 ------GREYTPQVQVAYDKFLAAVSA 134 (141)
T ss_dssp ------GGGCCHHHHHHHHHHHHHHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHH
Confidence 234788877777766665543
No 50
>2aa1_B Hemoglobin beta-C chain; ROOT effect, cooperativity, antarctic FISH, oxygen storage/transport complex; HET: HEM; 1.80A {Trematomus newnesi} SCOP: a.1.1.2 PDB: 1xq5_B* 3bj1_B* 3bj2_B* 3bj3_B*
Probab=35.79 E-value=97 Score=20.68 Aligned_cols=90 Identities=12% Similarity=0.193 Sum_probs=50.9
Q ss_pred HHhhcCCccH-----HHHHHHHhHHHHHHHhhcC---CCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHh
Q psy13777 14 FAQFGSDLDA-----ATQQLLNRGVRLTELLKQG---QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKS 85 (121)
Q Consensus 14 FaqFgSdLD~-----~Tk~~L~rG~rl~elLKQ~---q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~ 85 (121)
|.+|| |+++ .+.+.-.+|.++...|-.- --...+.-.++.-.++.. -.|++++.+.+-..|+..+..
T Consensus 42 F~~f~-~~~~~~~l~~~~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~~----~~V~p~~f~~~~~~Ll~~l~~ 116 (146)
T 2aa1_B 42 FGKFG-NLYNAAAIAQNAMVSKHGTTILNGLDRAVKNMDDITNTYAELSVLHSEK----LHVDPDNFKLLADCLTIVVAA 116 (146)
T ss_dssp CGGGC-CCSSHHHHHHCHHHHHHHHHHHHTTHHHHHCTTCHHHHHHHHHHHHHHT----SCCCTHHHHHHHHHHHHHHHH
T ss_pred HHHhc-CCCcHHHHhcCHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhHh----cCCCHHHHHHHHHHHHHHHHH
Confidence 66775 5542 4566678898887654321 111112222222223221 357788888888888777754
Q ss_pred chhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 86 SERGLLESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 86 ~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
..+ ..++++..+.-.+++..+..
T Consensus 117 ~lg---------~~~t~e~~~AW~k~~~~va~ 139 (146)
T 2aa1_B 117 RFG---------SAFTGEVQAAFQKFMAVVVS 139 (146)
T ss_dssp HHG---------GGSCHHHHHHHHHHHHHHHH
T ss_pred Hcc---------ccCCHHHHHHHHHHHHHHHH
Confidence 432 34788877777766655443
No 51
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=35.74 E-value=22 Score=21.91 Aligned_cols=20 Identities=10% Similarity=0.386 Sum_probs=15.9
Q ss_pred cCCccHHHHHHHHhHHHHHHH
Q psy13777 18 GSDLDAATQQLLNRGVRLTEL 38 (121)
Q Consensus 18 gSdLD~~Tk~~L~rG~rl~el 38 (121)
|+|+++++++ ++-|++++.-
T Consensus 38 ~~d~eeAsrr-I~Eg~~~v~~ 57 (65)
T 1zv1_A 38 DANIEEASRR-IEEGQYVVNE 57 (65)
T ss_dssp TTCHHHHHHH-HHHHHHHHHH
T ss_pred CCCHHHHHHH-HHHHHHHHHH
Confidence 6899999988 7888887653
No 52
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=35.43 E-value=99 Score=20.66 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=54.3
Q ss_pred HHHhhcCCccH----HHHHHHHhHHHHHHHhhcCC---CC--CCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHH
Q psy13777 13 AFAQFGSDLDA----ATQQLLNRGVRLTELLKQGQ---YV--PMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHI 83 (121)
Q Consensus 13 aFaqFgSdLD~----~Tk~~L~rG~rl~elLKQ~q---~~--P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l 83 (121)
-|.+|+ |++. .+.+.-.+|.++...|-.-- -. ..+.-.++.-.++. -.|+++....+...++..+
T Consensus 53 ~F~~~~-~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ld~~~l~~~l~~L~~~H~~-----~gV~p~~f~~~~~~ll~~l 126 (158)
T 1hlb_A 53 KFPQMA-GMSASQLRSSRQMQAHAIRVSSIMSEYVEELDSDILPELLATLARTHDL-----NKVGADHYNLFAKVLMEAL 126 (158)
T ss_dssp TSGGGT-TCCHHHHTTCHHHHHHHHHHHHHHHHHHTTCCTTSHHHHTHHHHHHHHH-----TTCCHHHHHHHHHHHHHHH
T ss_pred Hhhhhc-CCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhhc-----cCCCHHHHHHHHHHHHHHH
Confidence 355664 6665 45666788888877665311 11 11112222223333 2688888888888888777
Q ss_pred HhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q psy13777 84 KSSERGLLESIKKEGKITEDTDAKLKTVVTNFLAN 118 (121)
Q Consensus 84 ~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~ 118 (121)
.... +..++++..+.-.+++..+...
T Consensus 127 ~~~l---------g~~~t~e~~~AW~~~~~~v~~~ 152 (158)
T 1hlb_A 127 QAEL---------GSDFNEKTRDAWAKAFSVVQAV 152 (158)
T ss_dssp HHHH---------TTCCCTHHHHHHHHHHHHHHHT
T ss_pred HHHh---------ccCCCHHHHHHHHHHHHHHHHH
Confidence 5432 2458888888888777766543
No 53
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=34.16 E-value=70 Score=21.23 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=26.4
Q ss_pred CCChhHHHHHHHHHHHHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 66 KLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 66 ~i~~~~v~~f~~~l~~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
.|++++.+.+-..|+..+.... +..++++..+.-.+++..+..
T Consensus 92 ~V~p~~f~~~~~~Ll~~l~~~l---------g~~~t~e~~~AW~~~~~~va~ 134 (141)
T 2r80_A 92 RVDPVNFKLLGHCFLVVVAVHF---------PSLLTPEVHASLDKFVLAVGT 134 (141)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHC---------TTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHc---------cccCCHHHHHHHHHHHHHHHH
Confidence 4666666666666665554322 345888888777777665544
No 54
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=32.91 E-value=70 Score=21.38 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHhhcCCccH--HHHHHHHhHHHHHHHhhcCCCCCCC------HHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHh
Q psy13777 14 FAQFGSDLDA--ATQQLLNRGVRLTELLKQGQYVPMA------IEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKS 85 (121)
Q Consensus 14 FaqFgSdLD~--~Tk~~L~rG~rl~elLKQ~q~~P~~------~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~ 85 (121)
|.+||++.|+ .+.+.-.+|+++...|-.---.-=. .-.++.-.++.. -.|++++.+.+...|+..+..
T Consensus 52 F~~f~~~~~~l~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~----~~V~p~~f~~~~~~Ll~~l~~ 127 (146)
T 1it2_A 52 FPKFSTKKSNLEQDPEVKHQAVVIFNKVNEIINSMDNQEEIIKSLKDLSQKHKTV----FKVDSIWFKELSSIFVSTIDG 127 (146)
T ss_dssp CTTTTTCCSCGGGCHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHT----SCCCTTHHHHHHHHHHHHTTC
T ss_pred ccccCCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhh----cCCCHHHHHHHHHHHHHHHHH
Confidence 6666633221 4455667777776655432111111 111111122211 246666666666666666654
Q ss_pred ch
Q psy13777 86 SE 87 (121)
Q Consensus 86 ~~ 87 (121)
..
T Consensus 128 ~l 129 (146)
T 1it2_A 128 GA 129 (146)
T ss_dssp CH
T ss_pred hC
Confidence 43
No 55
>2zs0_D Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2zfo_D* 2zs1_D* 2d2m_D* 2d2n_D*
Probab=30.89 E-value=42 Score=22.75 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=40.2
Q ss_pred HHHhhcCCccHHHHHHHHhHHHHHHHhhcC---CCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhc
Q psy13777 13 AFAQFGSDLDAATQQLLNRGVRLTELLKQG---QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 86 (121)
Q Consensus 13 aFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~---q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~ 86 (121)
-|.+|| |..+.+...||.|++..|--- --.|=.+... +-=.+..+-..-.|++++.+.+...|+..|...
T Consensus 49 ~F~~~~---~~~~~~~~aH~~~v~~~l~~~v~~ldd~~~l~~~-l~~L~~~H~~~~gV~p~~F~~~~~~ll~~l~~~ 121 (145)
T 2zs0_D 49 MFPGGG---DSSSAEFLAQVSRVISGADIAINSLTNRATCDSL-LSHLNAQHKAISGVTGAAVTHLSEAISSVVAQV 121 (145)
T ss_dssp GSGGGG---CTTSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHH-HHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hcccCC---CCCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 388888 445667889999998754321 1121111111 111122222222789999999999988877544
No 56
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=30.03 E-value=36 Score=25.55 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777 10 EVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG 59 (121)
Q Consensus 10 ELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~ 59 (121)
|+..|.+|+.-.|.+-++.++.-++| |-|.-++.++|+++|=++
T Consensus 74 ~~~~~~~~~~~~~~~v~~iVewAK~i------PgF~~L~~~DQi~LLk~~ 117 (273)
T 3vi8_A 74 EVRIFHCCQCTSVETVTELTEFAKAI------PGFANLDLNDQVTLLKYG 117 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGS------TTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC------cCcccCCHHHHHHHHHHH
Confidence 55678888888888888888887776 789999999999886544
No 57
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=29.74 E-value=62 Score=21.29 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=40.0
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcCC---CCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhch
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQGQ---YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSE 87 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q---~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~ 87 (121)
|.+|+ +++..+...-.+|.+++..|-.-- -.|-.+... +-=.+-.+.-. .|+++..+.+-..|+..+....
T Consensus 46 F~~~~-~~~~~s~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~-l~~L~~~H~~~-gV~p~~f~~~~~~Ll~~l~~~l 119 (140)
T 1x9f_D 46 FSRVR-GDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQ-LAHLKVQHVER-NLKPEFFDIFLKHLLHVLGDRL 119 (140)
T ss_dssp GGGGT-TTCTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH-HHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 66665 456666667788888776654321 121111111 11122222223 7888998888888888876543
No 58
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=29.15 E-value=1.2e+02 Score=19.87 Aligned_cols=72 Identities=8% Similarity=0.101 Sum_probs=41.9
Q ss_pred HHHhhcCCccHHHHHHHHhHHHHHHHhh---cCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhch
Q psy13777 13 AFAQFGSDLDAATQQLLNRGVRLTELLK---QGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSE 87 (121)
Q Consensus 13 aFaqFgSdLD~~Tk~~L~rG~rl~elLK---Q~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~ 87 (121)
-|.+|+ +.+..+.+.-.+|.|++..|- ..--.|-.+.. .+-=.+-.+--. .|++++.+.+-..|+..|....
T Consensus 45 ~F~~~~-~~~~~s~~~~~h~~~v~~~l~~~v~~ldd~~~l~~-~l~~L~~~H~~~-gV~p~~f~~~~~~Ll~~l~~~l 119 (142)
T 2zs0_B 45 LFSRVN-GNDIDSSEFQAHSLRVLGGLDMCVASLDDVPVLNA-LLARLNSQHDSR-GIPAAGYPAFVASAISAVRATV 119 (142)
T ss_dssp GGGGGT-TTSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHTTS-CCCTTHHHHHHHHHHHHHHHHH
T ss_pred hhhhcc-CCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHc
Confidence 366665 345556667788988776652 22222211211 222223333333 8999999999999998886543
No 59
>1x9f_C Erythrocruorin, globin III, extracellular, globin C; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_C*
Probab=28.12 E-value=49 Score=22.29 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=38.5
Q ss_pred HHHhhcCCccHHHHHHHHhHHHHHHHhhcC---CCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhc
Q psy13777 13 AFAQFGSDLDAATQQLLNRGVRLTELLKQG---QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 86 (121)
Q Consensus 13 aFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~---q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~ 86 (121)
-|.+|+ +.|..+.+...+|.|++..|-.- --.|-.+...+ -=.+-.+--.-.|++++.+.+...|+..+...
T Consensus 53 ~F~~~~-~~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~~l~~~l-~~L~~~H~~~lgV~p~~f~~~~~~Ll~~l~~~ 127 (153)
T 1x9f_C 53 LFKRVD-IEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAAL-DHLAHQHEVREGVQKAHFKKFGEILATGLPQV 127 (153)
T ss_dssp HTGGGT-GGGTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH-HHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcC-ccCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHhhccccCCCHHHHHHHHHHHHHHHHHH
Confidence 466665 44556667788998877643321 11211111111 11111111113688888888888888877544
No 60
>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin, barley, ligand binding, non- symbiotic, symbiotic, evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB: 2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* 3qqq_A* 3qqr_A*
Probab=27.31 E-value=1.4e+02 Score=19.83 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=55.3
Q ss_pred HHhhcC-Ccc-HHHHHHHHhHHHHHHHh----hc-CCCCCC----CHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHH
Q psy13777 14 FAQFGS-DLD-AATQQLLNRGVRLTELL----KQ-GQYVPM----AIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAH 82 (121)
Q Consensus 14 FaqFgS-dLD-~~Tk~~L~rG~rl~elL----KQ-~q~~P~----~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~ 82 (121)
|.+|+. +.| ....+...||.++...| +. .....+ +.-.++.-.++. . .|+++....+...|+..
T Consensus 51 F~~~~~~~~~~~~~~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~~~~l~~Lg~~H~~-~----gV~p~~f~~~~~~Ll~~ 125 (162)
T 2oif_A 51 FPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLK-Y----GVADGHFEVTRFALLET 125 (162)
T ss_dssp CHHHHTCCSCGGGCHHHHHHHHHHHHHHHHHHHTHHHHTSCCCSSSCHHHHHHHHHH-T----TCCHHHHHHHHHHHHHH
T ss_pred cccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHcCCHHhhhhHHHHHHHHHHHHHh-c----CCCHHHHHHHHHHHHHH
Confidence 555531 222 46677888999987765 21 011112 455666666665 2 58899999888888887
Q ss_pred HHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 83 IKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 83 l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+....+. ..++++..+.-.+++..+..
T Consensus 126 l~~~lg~--------~~~t~e~~~AW~~~~~~i~~ 152 (162)
T 2oif_A 126 IKEALPA--------DMWGPEMRNAWGEAYDQLVA 152 (162)
T ss_dssp HHHHSCG--------GGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCc--------ccCCHHHHHHHHHHHHHHHH
Confidence 7544220 34778777776666655443
No 61
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=25.79 E-value=1.6e+02 Score=21.76 Aligned_cols=90 Identities=14% Similarity=0.218 Sum_probs=50.5
Q ss_pred HHHhhcCCccHHHHHHHHhHHHHHHHhhcC---CCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhH
Q psy13777 13 AFAQFGSDLDAATQQLLNRGVRLTELLKQG---QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERG 89 (121)
Q Consensus 13 aFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~---q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~ 89 (121)
-|.+| |+++.+.+.-.+|+++...|-.- --.+-+.-.++.-.++. --.|++++.+.+-..|+..+....
T Consensus 184 ~F~~f--d~~~~n~~~~~h~~~v~~al~~~v~~lddl~~~l~~L~~~H~~----~~~V~p~~f~~~~~~ll~~l~~~l-- 255 (283)
T 1c7c_A 184 YFPHF--DLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAH----KLRVDPVNFKLLSHCLLVTLAAHL-- 255 (283)
T ss_dssp GCTTS--CCSTTCHHHHHHHHHHHHHHHHHHHTTTSHHHHTHHHHHHHHH----TTCCCTHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhC--CCCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh----ccCCCHHHHHHHHHHHHHHHHHHc--
Confidence 36666 77766677788888877655321 11111111222222221 135677777777777776664432
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 90 LLESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 90 ~~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
+..++++..+.-.+++..+..
T Consensus 256 -------g~~~t~e~~~AW~~~~~~va~ 276 (283)
T 1c7c_A 256 -------PAEFTPAVHASLDKFLASVST 276 (283)
T ss_dssp -------TTTCCHHHHHHHHHHHHHHHH
T ss_pred -------ccCCCHHHHHHHHHHHHHHHH
Confidence 345888887777776665543
No 62
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=25.54 E-value=74 Score=20.99 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=40.0
Q ss_pred HHHhhcCCccHHHHHHHHhHHHHHHHhhcC---CCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhch
Q psy13777 13 AFAQFGSDLDAATQQLLNRGVRLTELLKQG---QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSE 87 (121)
Q Consensus 13 aFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~---q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~ 87 (121)
-|.+|+ +.|..+.+...+|.|++..|-.- --.|-.+... +-=.+-.+--. .|++++.+.+...|+..+....
T Consensus 45 ~F~~~~-~~~~~~~~~~~h~~~v~~al~~~v~~ld~~~~l~~~-l~~L~~~H~~~-gV~p~~f~~~~~~Ll~~l~~~l 119 (140)
T 2zs0_A 45 LFSGVG-VDDMNSAAFTAHCLRVTGALNRLISQLDQQATINAD-LAHLAGQHASR-NLDASNFAAMGQAVMSVVPTHL 119 (140)
T ss_dssp GGGGGT-TTSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH-HHHHHHHHGGG-CCCHHHHHHHHHHHHHHGGGGC
T ss_pred hhhhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 366665 44555667788998876554321 1222111111 11122222223 7889999888888888776543
No 63
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=25.46 E-value=93 Score=20.57 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=40.9
Q ss_pred HHhhcCCccHHHHHHHHhHHHHHHHhhcCC---CCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhc
Q psy13777 14 FAQFGSDLDAATQQLLNRGVRLTELLKQGQ---YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 86 (121)
Q Consensus 14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q---~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~ 86 (121)
|.+|+ ++|..+...-.+|.+++..|-.-- -.|-.+. ..+-=.+-..--. .|+++..+.+...|+..|...
T Consensus 48 F~~~~-~~~~~s~~~~~h~~~v~~~l~~~v~~ldd~~~l~-~~l~~L~~~H~~~-gV~p~~f~~~~~~Ll~~l~~~ 120 (145)
T 1x9f_B 48 FKRVH-GDDTSHPAFIAHADRVLGGLDIAISTLDQPATLK-EELDHLQVQHEGR-KIPDNYFDAFKTAILHVVAAQ 120 (145)
T ss_dssp GGGGT-TTCTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHH
Confidence 66665 456666677788888876654321 1211111 1112223333333 899999999998888887654
No 64
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=24.87 E-value=1.6e+02 Score=19.59 Aligned_cols=90 Identities=8% Similarity=0.113 Sum_probs=52.0
Q ss_pred HHhhcCCccH----HHHHHHHhHHHHHHHhhc---CCC---CCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHH
Q psy13777 14 FAQFGSDLDA----ATQQLLNRGVRLTELLKQ---GQY---VPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHI 83 (121)
Q Consensus 14 FaqFgSdLD~----~Tk~~L~rG~rl~elLKQ---~q~---~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l 83 (121)
|.+|| |++. .+.+.-.+|.+++..|-. .-- .|-.+... +-=.+-.+-- -.|++++.+.+...|+.++
T Consensus 42 F~~f~-~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~~~~~~l~~~-l~~L~~~H~~-~~V~p~~f~~~~~~Ll~~l 118 (151)
T 2c0k_A 42 FPWFK-EIPFDDLPENARFKTHGTRILRQVDEGVKALSVDFGDKKFDDV-WKKLAQTHHE-KKVERRSYNELKDIIIEVV 118 (151)
T ss_dssp CHHHH-TSCGGGGGGCHHHHHHHHHHHHHHHHHHHTCCGGGCCHHHHHH-HHHHHHHHTT-SCCCHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHH-HHHHHHHHhh-CCCCHHHHHHHHHHHHHHH
Confidence 66774 4554 556677889988874432 112 22222111 1112222222 5788999998888888877
Q ss_pred HhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 84 KSSERGLLESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 84 ~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
.... + ++++..+.-.+++..+..
T Consensus 119 ~~~l----------g-~t~e~~~AW~k~~~~va~ 141 (151)
T 2c0k_A 119 CSCV----------K-LNEKQVHAYHKFFDRAYD 141 (151)
T ss_dssp HHHS----------C-CCHHHHHHHHHHHHHHHH
T ss_pred HHHc----------C-CCHHHHHHHHHHHHHHHH
Confidence 5432 2 778777766666655543
No 65
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=24.82 E-value=76 Score=28.01 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=31.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhchhHHHHHHHhcCCCCHHHHHHHHHH
Q psy13777 63 HLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTV 111 (121)
Q Consensus 63 ~ld~i~~~~v~~f~~~l~~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~ 111 (121)
-||+..+-.|.+.-..+.+ |......+++.|.+-+++++++.+.|..+
T Consensus 51 ~Ld~~~lr~i~~~~~~~~~-L~~Rk~~il~~i~~qg~lt~~l~~~i~~a 98 (785)
T 3bzc_A 51 SLDDTQLRMLEERLRYLRE-LEERRGAILASIEEQGKLTPELARDIKLA 98 (785)
T ss_dssp SCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCHHHHHHHHhc
Confidence 4454444443333333333 45556679999999999999998887654
No 66
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=24.35 E-value=1.6e+02 Score=19.48 Aligned_cols=39 Identities=8% Similarity=0.113 Sum_probs=22.5
Q ss_pred CCChhHHHHHHHHHHHHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy13777 66 KLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFL 116 (121)
Q Consensus 66 ~i~~~~v~~f~~~l~~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~ 116 (121)
.|++++.+.+-..++..+ ... .++++..+.-.+++..+.
T Consensus 105 ~V~p~~f~~~~~~ll~~l-----------~~~-~~t~e~~~AW~k~~~~va 143 (146)
T 3g46_A 105 KISAAEFGKINGPIKKVL-----------ASK-NFGDKYANAWAKLVAVVQ 143 (146)
T ss_dssp TCCHHHHGGGHHHHHHHH-----------HHT-TCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH-----------HHc-CCCHHHHHHHHHHHHHHH
Confidence 445555544444444433 333 688888777777766543
No 67
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=24.15 E-value=1.7e+02 Score=20.91 Aligned_cols=45 Identities=13% Similarity=0.329 Sum_probs=32.8
Q ss_pred HHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHH
Q psy13777 26 QQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITT 74 (121)
Q Consensus 26 k~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~ 74 (121)
+...+.|.+++.+++-..-.-++++|=-+-|.. .| +..|++..+.
T Consensus 8 ~~mke~Gl~lV~liREaEk~GfspEEV~aAl~~--~g--~~~P~~WLk~ 52 (162)
T 4dbg_B 8 DKMREEGLQLVSMIREGEAAGACPEEIFSALQY--SG--TEVPLQWLRS 52 (162)
T ss_dssp CHHHHHHHHHHHTTSTTCCSCCCHHHHHHHHHH--HT--CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh--cC--CCCcHHHHHH
Confidence 356789999999999999999998875444422 34 5678876543
No 68
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1
Probab=23.49 E-value=2.4e+02 Score=21.21 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhCCCCCCChh-HHHHHHHHHHHHHHhc----------------hhHH----HHHHHhcCCCCHHHHHH
Q psy13777 49 IEEQVAVIYCGVRGHLDKLDPA-KITTFEKEFLAHIKSS----------------ERGL----LESIKKEGKITEDTDAK 107 (121)
Q Consensus 49 ~~eQv~~L~a~~~g~ld~i~~~-~v~~f~~~l~~~l~~~----------------~~~~----~~~i~~~~~l~~~~~~~ 107 (121)
.+|.|+.+||..-+- |-+.-+ =...|.+.+.+.|... ...+ .+.-...+.+|.+-+.+
T Consensus 40 ~~EEvAtf~a~ml~t-~y~~~~~F~kNFf~Df~~~l~~~~~~~~~~~I~~~~kcDFs~i~~~~~~~~e~kk~~skEEKk~ 118 (223)
T 1ois_A 40 QAEEVAGFFAALLES-DHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQ 118 (223)
T ss_dssp HHHHHHHHHHHTTTS-SGGGCHHHHHHHHHHHHHHHHHTTCCTTCCCCCCGGGEECHHHHHHHHHHHHHHTTC---CHHH
T ss_pred HHHHHHHHHHHhcCC-ccccCHHHHHHHHHHHHHHhhhccccccCcccCchhhCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 349999999997553 222111 1244555555555321 1111 22223355678887777
Q ss_pred HHHHHHHHHHhc
Q psy13777 108 LKTVVTNFLANF 119 (121)
Q Consensus 108 l~~~~~~~~~~f 119 (121)
+++.-.+..+.|
T Consensus 119 ~Keek~~~~~~y 130 (223)
T 1ois_A 119 IRLEREKFEEDY 130 (223)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 777666665554
No 69
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} SCOP: a.1.1.0 PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A* 3pt7_A* 3pi2_A*
Probab=23.40 E-value=1.6e+02 Score=19.35 Aligned_cols=86 Identities=8% Similarity=0.115 Sum_probs=49.7
Q ss_pred HHHh-hcCCccH----HHHHHHHhHHHHHHHhhcC---CCCCC---CHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q psy13777 13 AFAQ-FGSDLDA----ATQQLLNRGVRLTELLKQG---QYVPM---AIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLA 81 (121)
Q Consensus 13 aFaq-FgSdLD~----~Tk~~L~rG~rl~elLKQ~---q~~P~---~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~ 81 (121)
-|.+ |+ |++. .+...-.+|.++...|-.- --.|- +.-.++.-.++ ++ .|+++....+...|+.
T Consensus 44 ~F~~~f~-~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~~H~---~~--gV~p~~f~~~~~~ll~ 117 (152)
T 3pt8_A 44 PFKSLFG-GLTLAQLQDNPKMKAQSLVFCNGMSSFVDHLDDNDMLVVLIQKMAKLHN---NR--GIRASDLRTAYDILIH 117 (152)
T ss_dssp GGHHHHT-TSCHHHHTTCHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHH---TT--TCCHHHHHHHHHHHHH
T ss_pred HhHHHHc-CCCHHHHhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---cC--CCCHHHHHHHHHHHHH
Confidence 3666 75 4554 3456678899888666432 22221 11122222232 22 7888888888888877
Q ss_pred HHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy13777 82 HIKSSERGLLESIKKEGKITEDTDAKLKTVVTNF 115 (121)
Q Consensus 82 ~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~ 115 (121)
.+.. +..++++..+.-.+++..+
T Consensus 118 ~l~~-----------g~~~t~e~~~AW~~~~~~v 140 (152)
T 3pt8_A 118 YMED-----------HNHMVGGAKDAWEVFVGFI 140 (152)
T ss_dssp HHHH-----------TTCCCTTHHHHHHHHHHHH
T ss_pred HHHH-----------cCcCCHHHHHHHHHHHHHH
Confidence 6643 3457777776666655444
No 70
>4h3z_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SAH; 2.15A {Burkholderia phymatum} PDB: 4h3y_A*
Probab=22.31 E-value=1.8e+02 Score=22.54 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=34.9
Q ss_pred hHHHHHHHHH-HHHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777 70 AKITTFEKEF-LAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLA 117 (121)
Q Consensus 70 ~~v~~f~~~l-~~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~ 117 (121)
++|..|..+- +..-...-||+++....++.|+++..+.|.+..++..+
T Consensus 227 ~~I~~WR~~qsl~rT~~rRPDLl~~~~~~~~Ls~~d~~~L~~~~~e~~~ 275 (276)
T 4h3z_A 227 AEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRADEAWLASLAKDASK 275 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHhhhhcCCCCHHHHHHHHHHHHHhhc
Confidence 4566654432 23334557999999999999999999999888777654
No 71
>2p7v_A Regulator of sigma D; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli}
Probab=22.26 E-value=2.1e+02 Score=20.25 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=39.2
Q ss_pred HHHHHHHHhhCCCCC------CChhHHHHHHHHHHHHHHhchhHHHHHHHhcCCCCHHHHHHH
Q psy13777 52 QVAVIYCGVRGHLDK------LDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKL 108 (121)
Q Consensus 52 Qv~~L~a~~~g~ld~------i~~~~v~~f~~~l~~~l~~~~~~~~~~i~~~~~l~~~~~~~l 108 (121)
+.++.|+--.|+=.. ...+.+..|+..|++|+..-|-++.+.|...-+ .+...+..
T Consensus 28 ~Llv~Yc~L~gl~P~~~~~~~p~~~~l~~FCq~LVDYvS~GHFeIYd~li~e~e-g~~~l~la 89 (158)
T 2p7v_A 28 HLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLE-GNGQLARA 89 (158)
T ss_dssp HHHHHHHHHHSCCCC-------CCHHHHHHHHHHHHHHHHHHHTHHHHHHTTCC-SHHHHHHH
T ss_pred HHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHc-CCcHHHHH
Confidence 455566665555432 244789999999999999999999988887655 55543333
No 72
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=22.12 E-value=1e+02 Score=16.74 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=17.1
Q ss_pred CCCChhHHHHHHHHHHHHHH
Q psy13777 65 DKLDPAKITTFEKEFLAHIK 84 (121)
Q Consensus 65 d~i~~~~v~~f~~~l~~~l~ 84 (121)
|+-+++++..|...|..|++
T Consensus 10 ~dA~~Eela~Y~~~LrhYiN 29 (36)
T 2bf9_A 10 DDAPVEDLIRFYNDLQQYLN 29 (36)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 57789999999999998875
No 73
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=21.90 E-value=98 Score=16.80 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=17.3
Q ss_pred CCCChhHHHHHHHHHHHHHH
Q psy13777 65 DKLDPAKITTFEKEFLAHIK 84 (121)
Q Consensus 65 d~i~~~~v~~f~~~l~~~l~ 84 (121)
|+-+++++..|-..|..|++
T Consensus 10 ~dA~pEela~Y~~~Lr~YiN 29 (36)
T 1bba_A 10 DNATPEQMAQYAAELRRYIN 29 (36)
T ss_dssp SCSSTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 57789999999999998885
No 74
>4f43_A Protelomerase; recombination-DNA complex; HET: DNA; 2.35A {Agrobacterium tumefaciens} PDB: 4f41_A*
Probab=20.41 E-value=19 Score=28.65 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=17.7
Q ss_pred HHHhHHHHHHHhhcCCCCCC
Q psy13777 28 LLNRGVRLTELLKQGQYVPM 47 (121)
Q Consensus 28 ~L~rG~rl~elLKQ~q~~P~ 47 (121)
.+.-|+|..|+|+|+.+.|-
T Consensus 148 AlaTGRR~~EILktGeF~~s 167 (320)
T 4f43_A 148 IGMTGRAPYEVFTQAEFSPA 167 (320)
T ss_dssp HHHHCCCHHHHHHTCCCEEE
T ss_pred HHHhcccHHHHHhhceeeec
Confidence 57789999999999999873
No 75
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=20.23 E-value=65 Score=18.40 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=13.7
Q ss_pred hcCCccHHHHHHHHhHHHHHHH
Q psy13777 17 FGSDLDAATQQLLNRGVRLTEL 38 (121)
Q Consensus 17 FgSdLD~~Tk~~L~rG~rl~el 38 (121)
.||+|-++.|+.|-|-+|--.+
T Consensus 10 ~~~~lsa~EkaRLrRERR~aKi 31 (46)
T 3sjd_D 10 MGSELTEAEKRRLLRERRQKKF 31 (46)
T ss_dssp -----CHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHH
Confidence 5999999999999888775543
No 76
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=20.21 E-value=97 Score=20.56 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=41.5
Q ss_pred HHHhhcCCccHHHHHHHHhHHHHHHHhhc---CCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhch
Q psy13777 13 AFAQFGSDLDAATQQLLNRGVRLTELLKQ---GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSE 87 (121)
Q Consensus 13 aFaqFgSdLD~~Tk~~L~rG~rl~elLKQ---~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~ 87 (121)
-|.+|+. .+..+.+...+|.|++..|-. .--.|-.+...+ -=.+-.+--.-.|++++.+.+...|+..+....
T Consensus 49 ~F~~~~~-~~~~~~~~~~h~~~v~~~l~~~v~~ldd~~~l~~~l-~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~~l 124 (147)
T 2zs0_C 49 LFSGVSA-DNPDSADFRAHCVRVVNGLDVAINMLNDPAVLNEQL-AHLSAQHQARAGVAAAHFDVMAEAFAEVMPQVS 124 (147)
T ss_dssp GGGGGTT-TSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH-HHHHHHHHTSTTCCHHHHHHHHHHHHHHGGGTS
T ss_pred hccccCc-cCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHhccccCCCHHHHHHHHHHHHHHHHHHc
Confidence 3666653 455677788999888876522 222221111111 111222222237889999999888888876543
Done!