RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13777
(121 letters)
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 195 bits (499), Expect = 6e-62
Identities = 48/120 (40%), Positives = 79/120 (65%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
++ LAQYRE+AAF+QF SDLD AT++ L+ G ++TELLKQ QY PM++ +Q V++
Sbjct: 393 IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAE 452
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
RG+L ++ +KI +FE LA++ L++ I + G ++ + KLK ++ +F A +
Sbjct: 453 RGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFKATQS 512
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 194 bits (496), Expect = 1e-61
Identities = 92/120 (76%), Positives = 105/120 (87%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 449
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
RG+LDKL+P+KIT FE FL+H+ S + LL I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 450 RGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFE 509
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 193 bits (492), Expect = 8e-61
Identities = 55/119 (46%), Positives = 80/119 (67%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
++++LAQYRE+ FAQF ++LD AT+ + RG RL ELLKQ QY PM +EEQV V++ GV
Sbjct: 395 LRIDLAQYRELETFAQFATELDPATRAQIIRGQRLMELLKQEQYSPMPVEEQVVVLFAGV 454
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
RG+LD L ++ FEKEFL + + +L+ IK + ++T +T+ KLK + F F
Sbjct: 455 RGYLDDLPVEEVRRFEKEFLRFMHEKHQDILDDIKTKKELTSETEEKLKKAIEEFKTTF 513
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 192 bits (489), Expect = 2e-60
Identities = 52/120 (43%), Positives = 71/120 (59%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
+KLELAQ+ E+ AFAQF SDLD ATQ L RG RL ELLKQ Q P+ +EEQV IY G
Sbjct: 383 LKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGT 442
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
G+LD L+ ++ + E ++K+++ E I TE+ +A LK + + F
Sbjct: 443 NGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERFL 502
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 185 bits (471), Expect = 7e-58
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 2/120 (1%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
++L+LAQYRE+ AFAQFGSDLD ATQ LNRG R E+LKQ ++ PM +EEQV IY
Sbjct: 382 LRLDLAQYRELQAFAQFGSDLDKATQAKLNRGERTVEILKQDEHKPMPVEEQVISIYAVT 441
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
G +D + + FE+E L+ +++++ LL+ I++ G++ + +L + F FT
Sbjct: 442 NGFMDDIPVEDVRRFEEELLSFMRANKDSLLDHIRQTGELPD--TKELDAAIEEFKKGFT 499
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.002
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 26/117 (22%)
Query: 7 QYREVAAFAQFGSDLDAATQQLL--NRGVRLTELLKQ--GQYVPMAIEEQVAVIYCGVRG 62
Q +E QF L T+ + EL+ + G YV +E G
Sbjct: 32 QLQE-----QFNKILPEPTEGFAADDEPTTPAELVGKFLG-YVSSLVEPSKV-------G 78
Query: 63 HLDKLDPAKITTFEKEFLAH--IKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLA 117
D++ +T FE +L I + LL+ + T K K ++ N++
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE-------NDTTLVKTKELIKNYIT 128
Score = 30.8 bits (69), Expect = 0.089
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 39/134 (29%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNR-GVRLTELLK-------------QGQ--- 43
M ++L Y+ A + A + G + +++ +G+
Sbjct: 1631 MGMDL--YKTSKAAQDV---WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 44 --YVPMAIEEQVAVIYCGVRGHLDKLDPAKIT--TFE--KEFL--------AHIKSSERG 89
Y M I E + +++ T TF K L A + E+
Sbjct: 1686 ENYSAM-IFETIVDGKLKTEKIFKEINE-HSTSYTFRSEKGLLSATQFTQPA-LTLMEKA 1742
Query: 90 LLESIKKEGKITED 103
E +K +G I D
Sbjct: 1743 AFEDLKSKGLIPAD 1756
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural
genomics, PSI-biology; 2.70A {Synechocystis SP}
Length = 148
Score = 25.9 bits (57), Expect = 3.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 75 FEKEFLAHIKSSERGLLESIKKEGKIT 101
FE++ +I +SE LES +I
Sbjct: 37 FERDLEPYIINSEFTALESKLSNNEIN 63
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics
consortium, GTPase-activating protein, SGC, alternative
splicing, anti-oncogene; 2.80A {Homo sapiens}
Length = 246
Score = 25.4 bits (56), Expect = 5.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 32 GVRLTELLKQGQYVPMAIEEQVAVI 56
GV LT ++ + +P+ IE + I
Sbjct: 55 GVPLTTVVTPEKPIPIFIERCIEYI 79
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold,
transferase; 2.10A {Corynebacterium glutamicum}
Length = 360
Score = 25.2 bits (55), Expect = 7.3
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 12 AAFAQFGSDLDAATQQLLNRGVR 34
+ G DL Q L GV
Sbjct: 320 SQLEALGVDLADVFQVLETEGVD 342
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP:
a.118.1.14
Length = 260
Score = 25.1 bits (54), Expect = 7.3
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 60 VRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIK 95
VR L+KL P K+ +E L I
Sbjct: 15 VRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVID 50
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein,
GTPase-activating protein for RHO family members,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2ee5_A
Length = 209
Score = 24.9 bits (55), Expect = 8.8
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 32 GVRLTELLKQGQYVPMAIEEQVAVI 56
G+ L +L+ + +P+ +E+ V I
Sbjct: 14 GMPLQDLVTAEKPIPLFVEKCVEFI 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.363
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,770,355
Number of extensions: 96022
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 21
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)