RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13777
(121 letters)
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain
3 {Cow (Bos taurus) [TaxId: 9913]}
Length = 131
Score = 132 bits (333), Expect = 9e-42
Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 11 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 70
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
RG+LDKL+P+KIT FE FL+H+ S + LL I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 71 RGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 129
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain
3 {Spinach (Spinacia oleracea), chloroplast [TaxId:
3562]}
Length = 129
Score = 126 bits (319), Expect = 1e-39
Identities = 52/119 (43%), Positives = 71/119 (59%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
+KLELAQ+ E+ AFAQF SDLD ATQ L RG RL ELLKQ Q P+ +EEQV IY G
Sbjct: 11 LKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGT 70
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
G+LD L+ ++ + E ++K+++ E I TE+ +A LK + + F
Sbjct: 71 NGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERF 129
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain
3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 131
Score = 119 bits (300), Expect = 1e-36
Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
++L+LA YRE+ AFAQFGSDLD ATQ + RG R E+LKQ + P+ +E+QV +IY
Sbjct: 11 LRLDLAAYRELEAFAQFGSDLDKATQANVARGARTVEVLKQDLHQPIPVEKQVLIIYALT 70
Query: 61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
RG LD + + FEKEF + + + LLE I+ + + L + F F
Sbjct: 71 RGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTKDLPN--EDDLNQAIEAFKKTFV 128
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human
(Homo sapiens) [TaxId: 9606]}
Length = 243
Score = 25.5 bits (55), Expect = 1.7
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 60 VRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIK 95
VR L+KL P K+ +E L I
Sbjct: 15 VRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVID 50
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 232
Score = 25.7 bits (55), Expect = 1.7
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 84 KSSERGL--LES-IKKEGKITEDTDAKLKTVVTN 114
KS + GL +E+ +K++ + A+ K ++ N
Sbjct: 199 KSGKAGLNVIENFLKQQSPPIPNYSAEEKELLMN 232
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA
{Staphylococcus aureus [TaxId: 1280]}
Length = 94
Score = 23.5 bits (51), Expect = 4.6
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 33 VRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKE 78
+R+ ELL + I Q+ + V L L + +++
Sbjct: 21 IRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 66
>d1swya_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId:
10665]}
Length = 164
Score = 23.5 bits (50), Expect = 8.1
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 27 QLLNRGVRLTELLKQGQYVP 46
Q NR R+ + G +
Sbjct: 141 QTPNRAKRVITTFRTGTWDA 160
>d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic
domain {Bacteriophage T4 [TaxId: 10665]}
Length = 216
Score = 23.4 bits (50), Expect = 8.8
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 26 QQLLNRGVRLTELLKQGQYVPMAI 49
QQ R R+T ++ G +
Sbjct: 189 QQTKGRASRVTMIILTGNLESYGV 212
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.363
Gapped
Lambda K H
0.267 0.0532 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 410,013
Number of extensions: 16701
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 14
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)