BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13778
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P06914|CSP_PLAYO Circumsporozoite protein OS=Plasmodium yoelii yoelii PE=1 SV=1
Length = 367
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 58/101 (57%)
Query: 45 NQIYWTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPT 104
N++ ++ + QGP PQGP QGP QGP PQGP PQGP Q P PQGP
Sbjct: 125 NKLNQPVVADENVDQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPG 184
Query: 105 LLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGP 145
QGP PQGP PQGP PQGP PQGP QGP QGP
Sbjct: 185 APQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGP 225
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 52/90 (57%)
Query: 80 TLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGP 139
+ QGP PQGP Q P PQGP QGP PQGP PQGP PQGP PQGP QGP
Sbjct: 136 NVDQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGP 195
Query: 140 TLLQGPTLLQGPTLLQGPTLPQGPTLLQGP 169
QGP QGP QGP PQGP QGP
Sbjct: 196 GAPQGPGAPQGPGAPQGPGAPQGPGAPQGP 225
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 93 LLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPT 152
++ D + QGP QGP PQGP PQGP PQGP PQGP QGP QGP QGP
Sbjct: 131 VVADENVDQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPG 190
Query: 153 LLQGPTLPQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDP 203
QGP PQGP PQGP PQGP PQ P Q P
Sbjct: 191 APQGPGAPQGPGA----------------PQGPGAPQGPGAPQGPGAPQGP 225
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 104 TLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGP 163
+ QGP PQGP PQGP PQGP PQGP QGP QGP QGP QGP PQGP
Sbjct: 136 NVDQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGP 195
Query: 164 TLLQGPTLLQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQGP 209
PQGP PQGP PQ P Q P QGP
Sbjct: 196 GA----------------PQGPGAPQGPGAPQGPGAPQGPGAPQGP 225
>sp|P27951|BAG_STRAG IgA FC receptor OS=Streptococcus agalactiae GN=bag PE=1 SV=1
Length = 1164
Score = 75.5 bits (184), Expect = 4e-13, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 64 PQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTL 123
P+ P + P L Q P PQ P P P + P P+ P + + P P+ P +P+ P
Sbjct: 827 PETPDTPKIPELPQAPDTPQAPDTPHVP---ESPKAPEAPRVPESPKTPEAPHVPESPKA 883
Query: 124 PQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTLPQ 183
P+ P +P+ P + P + + P + P + + P P P L P L P+ LP
Sbjct: 884 PEAPRVPESPKTPEAPHVPESPKTPEAPKIPEPPKTPDVPKLPDVPKLPDVPK----LPD 939
Query: 184 GPTLPQG 190
P LP G
Sbjct: 940 APKLPDG 946
Score = 75.1 bits (183), Expect = 6e-13, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 53 QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP 112
+ P + P LPQ P Q P P +P+ P P+ P + + P P+ P + + P P
Sbjct: 828 ETPDTPKIPELPQAPDTPQAP---DTPHVPESPKAPEAPRVPESPKTPEAPHVPESPKAP 884
Query: 113 QGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLL 172
+ P +P+ P P+ P +P+ P + P + + P P L P LP P L P L
Sbjct: 885 EAPRVPESPKTPEAPHVPESPKTPEAPKIPEPPKTPDVPKLPDVPKLPDVPKLPDAPKLP 944
Query: 173 QGPRK 177
G K
Sbjct: 945 DGLNK 949
Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 82 PQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTL 141
P+ P P+ P L Q P PQ P P +P+ P P+ P +P+ P P+ P + + P
Sbjct: 827 PETPDTPKIPELPQAPDTPQAP---DTPHVPESPKAPEAPRVPESPKTPEAPHVPESPKA 883
Query: 142 LQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPTLPQDPTLLQ 201
+ P + + P + P +P+ P + P + P+ P P P LP P L
Sbjct: 884 PEAPRVPESPKTPEAPHVPESPKTPEAPKI----------PEPPKTPDVPKLPDVPKLPD 933
Query: 202 DPTLLQGPR 210
P L P+
Sbjct: 934 VPKLPDAPK 942
>sp|Q6PCZ4|MAGE1_MOUSE Melanoma-associated antigen E1 OS=Mus musculus GN=Magee1 PE=1 SV=1
Length = 918
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 7/166 (4%)
Query: 55 PTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQG 114
P +LQG +GP PT +GP+ PT +G + + + QGP + PT +G
Sbjct: 42 PKILQGLRASEGPGTSMLPTPREGPSASVPPTASEGSSAPRQFIISQGPNTSEMPTSRKG 101
Query: 115 PTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQG 174
+ P + G T +GP PT +G + + +G + + G
Sbjct: 102 RGASRPPAVSAGLNTAMSITASEGPNSPVPPTAPKGSKAYEHLPVSEGLAISEQRHSDGG 161
Query: 175 PRKGPTLPQGPTLPQGPTLPQDP-------TLLQDPTLLQGPRYKE 213
P PTL +GP + PT ++ ++ P + +GP E
Sbjct: 162 PNMEPTLGEGPGISVPPTFSEESGISDEGLSIFMSPNISEGPGINE 207
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 23/175 (13%)
Query: 51 LLQGPTLLQGP---TLP---QGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQG-- 102
+LQG +GP LP +GP+ PT +G + P+ + QGP + PT +G
Sbjct: 44 ILQGLRASEGPGTSMLPTPREGPSASVPPTASEGSSAPRQFIISQGPNTSEMPTSRKGRG 103
Query: 103 ----PTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQ------GPT 152
P + G T +GP P PT P+G + + +G + + GP
Sbjct: 104 ASRPPAVSAGLNTAMSITASEGPNSPVPPTAPKGSKAYEHLPVSEGLAISEQRHSDGGPN 163
Query: 153 LLQGPTLPQGPTLLQGPTLLQG---PRKGPTLPQGPTLPQGPTLPQDPTLLQDPT 204
+ PTL +GP + PT + +G ++ P + +GP + + ++ +DP+
Sbjct: 164 M--EPTLGEGPGISVPPTFSEESGISDEGLSIFMSPNISEGPGINEPYSVSEDPS 216
>sp|Q9ES73|MAGD1_RAT Melanoma-associated antigen D1 OS=Rattus norvegicus GN=Maged1 PE=1
SV=3
Length = 775
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 41/108 (37%)
Query: 68 TLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGP 127
L Q P Q P+ Q T Q P Q P Q P+ Q P Q P + P + Q P
Sbjct: 291 VLWQTPLAWQNPSGWQNQTARQTPPARQSPPARQTPSAWQNPVAWQNPVIWPNPVIWQNP 350
Query: 128 TLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGP 175
+ P + GP + P Q Q P Q P Q P QGP
Sbjct: 351 VIWPNPIVWPGPIVWPNPMAWQSTPGWQSPPSWQAPPSWQSPQDWQGP 398
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 62/180 (34%), Gaps = 27/180 (15%)
Query: 50 TLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGP 109
L Q P Q P+ Q T Q P Q P Q P+ Q P Q+P + P + Q P
Sbjct: 291 VLWQTPLAWQNPSGWQNQTARQTPPARQSPPARQTPSAWQNPVAWQNPVIWPNPVIWQNP 350
Query: 110 TLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGP------------ 157
+ P + GP + P Q Q P Q P Q P QGP
Sbjct: 351 VIWPNPIVWPGPIVWPNPMAWQSTPGWQSPPSWQAPPSWQSPQDWQGPPDWQLPPDWSMP 410
Query: 158 ---TLPQG--------PTLLQGPTLLQGPRKGPTLPQGP----TLPQGPTLPQDPTLLQD 202
+ P P P Q R P L P + QGP P+D LLQ+
Sbjct: 411 PDWSFPSDWPFPPDWIPADWPIPPDWQNLRPSPNLRSSPNSRASQNQGPPQPRDVALLQE 470
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 134 TLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPTL 193
L Q P Q P+ Q T Q P Q P Q P+ Q P Q P + P +
Sbjct: 291 VLWQTPLAWQNPSGWQNQTARQTPPARQSPPARQTPSAWQNP----VAWQNPVIWPNPVI 346
Query: 194 PQDPTLLQDPTLLQGP 209
Q+P + +P + GP
Sbjct: 347 WQNPVIWPNPIVWPGP 362
>sp|Q9ULD5|ZN777_HUMAN Zinc finger protein 777 OS=Homo sapiens GN=ZNF777 PE=1 SV=2
Length = 760
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 69/155 (44%), Gaps = 30/155 (19%)
Query: 76 LQGPTLPQGPTLPQGP------TLLQDPTLP--QGPTLLQGPTLPQGPTLPQGPTLPQGP 127
L P++PQ TL Q P TL Q LP + P+L PT+P+ +LPQ + P+
Sbjct: 9 LSFPSVPQEETLRQAPAGLPRETLFQSRVLPPKEIPSL--SPTIPRQGSLPQTSSAPKQE 66
Query: 128 TLPQGPTLLQ-GPTLLQGPTLLQGPTLLQGPTLPQGPT--------------LLQGPTLL 172
T + P +LQ GP+LL Q T LQGP Q T L P
Sbjct: 67 TSGRMPHVLQKGPSLLCSAASEQ-ETSLQGPLASQEGTQYPPPAAAEQEVSLLSHSPHHQ 125
Query: 173 QGPRKGPTLPQGPTLPQGPTLPQ---DPTLLQDPT 204
+ P P P+ L PT+P+ DP LLQ P
Sbjct: 126 EAPVHSPEAPEKDPLTLSPTVPETDMDP-LLQSPV 159
>sp|Q9Y5V3|MAGD1_HUMAN Melanoma-associated antigen D1 OS=Homo sapiens GN=MAGED1 PE=1 SV=3
Length = 778
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 41/107 (38%)
Query: 68 TLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGP 127
L Q P Q P+ Q T Q P Q P Q P Q P Q P + P + Q P
Sbjct: 294 VLWQTPLAWQNPSGWQNQTARQTPPARQSPPARQTPPAWQNPVAWQNPVIWPNPVIWQNP 353
Query: 128 TLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQG 174
+ P + GP + P Q P Q P Q P QGP QG
Sbjct: 354 VIWPNPIVWPGPVVWPNPLAWQNPPGWQTPPGWQTPPGWQGPPDWQG 400
>sp|Q9QYH6|MAGD1_MOUSE Melanoma-associated antigen D1 OS=Mus musculus GN=Maged1 PE=1 SV=1
Length = 775
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 44/120 (36%), Gaps = 5/120 (4%)
Query: 56 TLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGP 115
+ Q P Q P+ Q T Q P P Q P Q P+ Q P Q P + P
Sbjct: 290 VVWQTPLAWQNPSGWQNQTARQTP-----PAARQSPPARQTPSAWQNPVAWQNPVIWPNP 344
Query: 116 TLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGP 175
+ Q P + P + GP + P Q Q P Q P Q P QGP Q P
Sbjct: 345 VIWQNPVIWPNPIVWPGPIVWPNPMAWQSTPGWQSPPSWQAPPSWQSPQDWQGPPDWQVP 404
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 45/120 (37%), Gaps = 5/120 (4%)
Query: 50 TLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGP 109
+ Q P Q P+ Q T Q P P Q P Q P+ Q+P Q P + P
Sbjct: 290 VVWQTPLAWQNPSGWQNQTARQTP-----PAARQSPPARQTPSAWQNPVAWQNPVIWPNP 344
Query: 110 TLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGP 169
+ Q P + P + GP + P Q Q P Q P Q P QGP Q P
Sbjct: 345 VIWQNPVIWPNPIVWPGPIVWPNPMAWQSTPGWQSPPSWQAPPSWQSPQDWQGPPDWQVP 404
>sp|P18856|CAF1_EPHMU Collagen EMF1-alpha (Fragment) OS=Ephydatia muelleri GN=COLF1 PE=3
SV=2
Length = 547
Score = 38.9 bits (89), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 34/75 (45%)
Query: 88 PQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTL 147
PQGP L+ +G +G P G P G + GP P G +QGP GPT
Sbjct: 210 PQGPAGLKGVKGEKGEVGDKGILGPDGDKGPTGMSGDAGPAGPIGDAGIQGPPGQDGPTG 269
Query: 148 LQGPTLLQGPTLPQG 162
QGP QGP P G
Sbjct: 270 AQGPRGGQGPKGPAG 284
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 52 LQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQG---PTLPQGPTLLQDPTLPQGP---TL 105
+G L G PQGP L+G +G +G P +GPT + P GP
Sbjct: 198 AKGTVGLPGNQGPQGPAGLKGVKGEKGEVGDKGILGPDGDKGPTGMSGDAGPAGPIGDAG 257
Query: 106 LQGPTLPQGPTLPQGPTLPQGPTLPQG 132
+QGP GPT QGP QGP P G
Sbjct: 258 IQGPPGQDGPTGAQGPRGGQGPKGPAG 284
>sp|Q9HCI5|MAGE1_HUMAN Melanoma-associated antigen E1 OS=Homo sapiens GN=MAGEE1 PE=1 SV=2
Length = 957
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 11/182 (6%)
Query: 39 AARELWNQIYWTLLQGPTL------LQGPTLPQGPT---LLQGPTLLQGPTLPQGPTLPQ 89
A+ + W +Q P + G +PQGP+ +LQG +GP+ PT +
Sbjct: 15 VAKATAHNSSWGEMQAPNAPGLPADVPGSDVPQGPSDSQILQGLCASEGPSTSVLPTSAE 74
Query: 90 GPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQ 149
GP+ PT+ + + PT+ +GP PT +G + PT+ +G +
Sbjct: 75 GPSTFVPPTISEASSASGQPTISEGPGTSVLPTPSEGLSTSGPPTISKGLCTSVTLAASE 134
Query: 150 GPTLLQGPTLPQGPTLLQGPTLLQGPRKG--PTLPQGPTLPQGPTLPQDPTLLQDPTLLQ 207
G + PT + P+ PT + P PT +G + PT + P+ PT +
Sbjct: 135 GRNTSRPPTSSEEPSTSVPPTASEVPSTSLPPTPGEGTSTSVPPTAYEGPSTSVVPTPDE 194
Query: 208 GP 209
GP
Sbjct: 195 GP 196
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 51 LLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQG------PTLPQGPTLLQDPTLPQG-- 102
+LQG +GP+ PT +GP+ PT+ + PT+ +GP PT +G
Sbjct: 54 ILQGLCASEGPSTSVLPTSAEGPSTFVPPTISEASSASGQPTISEGPGTSVLPTPSEGLS 113
Query: 103 ----PTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPT 158
PT+ +G +G + PT + P+ PT + P+ PT +G +
Sbjct: 114 TSGPPTISKGLCTSVTLAASEGRNTSRPPTSSEEPSTSVPPTASEVPSTSLPPTPGEGTS 173
Query: 159 LPQGPTLLQGP--TLLQGPRKGPTLPQGPTLPQGP 191
PT +GP +++ P +GP+ PT +GP
Sbjct: 174 TSVPPTAYEGPSTSVVPTPDEGPSTSVLPTPGEGP 208
>sp|O42350|CO1A2_LITCT Collagen alpha-2(I) chain OS=Lithobates catesbeiana GN=COL1A2 PE=2
SV=1
Length = 1355
Score = 38.1 bits (87), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%)
Query: 72 GPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQ 131
GP+ L G P G P G + + P GP + GP+ P+GP PQG +G +
Sbjct: 946 GPSGLAGAPGPAGSAGPAGKSGNRGEGGPSGPAGITGPSGPRGPAGPQGVRGDKGEAGER 1005
Query: 132 GPTLLQGPTLLQGPTLLQGPTLLQGPTLPQG 162
G L G G + L GP+ G T P G
Sbjct: 1006 GARGLDGRKGHNGLSGLPGPSGTPGETGPSG 1036
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 39/110 (35%), Gaps = 6/110 (5%)
Query: 59 QGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLP 118
+G P+G GP G P GP P G T + P G T GP G P
Sbjct: 732 RGAKGPKGEAGSPGPLGAHGSAGPAGPNGPAGSTGARGDAGPSGATGFPGPAGRAGAPGP 791
Query: 119 QGPTLPQGPTLPQGPTLLQGPTLLQGPTLL------QGPTLLQGPTLPQG 162
G P GPT G +GP GP GP L G P G
Sbjct: 792 PGNVGPSGPTGHPGKDGSRGPRGDSGPVGRPGEQGQHGPVGLAGDKGPSG 841
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 43/119 (36%), Gaps = 7/119 (5%)
Query: 77 QGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQG---P 133
GP P G P+G + P GPT GP G T +G +GP G P
Sbjct: 687 SGPAGPSGVAGPRGAPGERGEAGPAGPTGFAGPPGAAGHTGAKGDRGAKGPKGEAGSPGP 746
Query: 134 TLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPT 192
G GP G T +G P G T GP R G P G P GPT
Sbjct: 747 LGAHGSAGPAGPNGPAGSTGARGDAGPSGATGFPGPAG----RAGAPGPPGNVGPSGPT 801
>sp|Q8K4P0|WDR33_MOUSE pre-mRNA 3' end processing protein WDR33 OS=Mus musculus GN=Wdr33
PE=2 SV=1
Length = 1330
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 65/143 (45%), Gaps = 28/143 (19%)
Query: 53 QGPTLLQGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTL- 111
QGP QG PQGP QG +QGP P+G P P +Q QG +QGP +
Sbjct: 719 QGPPASQGHMGPQGPPGTQG---MQGPPGPRGMQGPPHPHGIQGGPASQG---IQGPLMG 772
Query: 112 --PQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPT-----LLQGPTLLQGPTL----- 159
P+G P GP QGP PQG + P ++GP L GP ++GP
Sbjct: 773 LNPRGMQGPPGPRENQGPA-PQGLMIGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQ 831
Query: 160 ---PQG-----PTLLQGPTLLQG 174
PQG P L+GP+ QG
Sbjct: 832 GPPPQGSMLGPPQELRGPSGSQG 854
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 100 PQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTL 159
PQGP QG PQGP QG P GP QGP P +QG QG +QGP +
Sbjct: 718 PQGPPASQGHMGPQGPPGTQGMQGPPGPRGMQGPPH---PHGIQGGPASQG---IQGPLM 771
Query: 160 PQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDP 203
P +QGP GP QGP PQG + P ++ P
Sbjct: 772 GLNPRGMQGPP-------GPRENQGPA-PQGLMIGHPPQEMRGP 807
>sp|Q6ITT4|MAGD1_PIG Melanoma-associated antigen D1 OS=Sus scrofa GN=MAGED1 PE=2 SV=1
Length = 784
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 40/107 (37%)
Query: 68 TLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGP 127
L Q P Q P+ Q Q P Q P Q P Q P Q P + P + Q P
Sbjct: 300 VLWQTPLAWQNPSGWQNQPARQTPPARQSPPARQTPPAWQNPVAWQNPVIWPNPVIWQNP 359
Query: 128 TLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQG 174
+ P + GP + P Q P Q P Q P QGP QG
Sbjct: 360 VIWPNPIVWPGPVVWPNPLAWQNPPGWQTPPGWQTPPGWQGPPDWQG 406
>sp|Q9BE18|MAGE1_MACFA Melanoma-associated antigen E1 OS=Macaca fascicularis GN=MAGEE1
PE=2 SV=1
Length = 957
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 11/182 (6%)
Query: 39 AARELWNQIYWTLLQGPTL------LQGPTLPQGPT---LLQGPTLLQGPTLPQGPTLPQ 89
A+ + W +Q P + G +PQGP+ +LQG +GP+ PT +
Sbjct: 15 VAKATAHNSSWDEMQAPNAPGFPADMPGSDVPQGPSDSQILQGLCASEGPSTSVLPTSAE 74
Query: 90 GPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQ 149
GP+ PT+ + + PT+ +GP T +G + PT+ +G +
Sbjct: 75 GPSTFVPPTISEASSASGQPTVSEGPGTSLLATPSEGLSTSGPPTISKGLCTSVTLAASE 134
Query: 150 GPTLLQGPTLPQGPTLLQGPTLLQGPRKG--PTLPQGPTLPQGPTLPQDPTLLQDPTLLQ 207
G + PT + P+ T +G PT +GP+ PT + P+ T +
Sbjct: 135 GRNTSRPPTSSEEPSTSVPATPGEGTSTSVPPTASEGPSTSVVPTPDEGPSTSVQSTAGE 194
Query: 208 GP 209
GP
Sbjct: 195 GP 196
>sp|Q9P7E8|APP1_SCHPO Protein app1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=app1 PE=2 SV=1
Length = 857
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 89 QGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLL 136
+ P++ Q P P P + P P P +P+ P++PQ P +P P L
Sbjct: 525 EAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEAL 572
>sp|Q63560|MAP6_RAT Microtubule-associated protein 6 OS=Rattus norvegicus GN=Map6 PE=1
SV=1
Length = 952
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 104 TLLQGPTLPQGPTLPQGPTLPQGPTLP-----QGPTLLQGPTLLQGPTLLQGPTLLQGPT 158
++ P QGP +P+ PT Q P +P QGP L + P QGP ++ GP Q P
Sbjct: 834 SVFVAPVKSQGPVVPE-PTKGQDPIIPALAKDQGPILPE-PPKNQGPPVVLGPIKNQDPV 891
Query: 159 LPQGPTLLQGPTLLQGPRK--GPTLPQGPTLPQGPTLPQDPTLLQDPTLL 206
+P P Q P ++ P K GPT P P QGP PQ PT+ P ++
Sbjct: 892 IPV-PLKGQDP-VVPAPTKDPGPTAPD-PLKSQGPRGPQLPTVSPSPPVM 938
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 31/130 (23%)
Query: 48 YWTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPTLP-----QGPTLPQGPTLLQDPTLPQG 102
+ ++ P QGP +P+ PT Q P +P QGP LP+ P QG
Sbjct: 832 HGSVFVAPVKSQGPVVPE-------PTKGQDPIIPALAKDQGPILPEPPKN-------QG 877
Query: 103 PTLLQGPTLPQGPTLP-----QGPTLPQ-----GPTLPQGPTLLQGPTLLQGPTLLQGPT 152
P ++ GP Q P +P Q P +P GPT P P QGP Q PT+ P
Sbjct: 878 PPVVLGPIKNQDPVIPVPLKGQDPVVPAPTKDPGPTAPD-PLKSQGPRGPQLPTVSPSPP 936
Query: 153 LLQGPTLPQG 162
++ PT+P
Sbjct: 937 VMI-PTVPHA 945
>sp|P35248|SFTPD_RAT Pulmonary surfactant-associated protein D OS=Rattus norvegicus
GN=Sftpd PE=1 SV=1
Length = 374
Score = 34.3 bits (77), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 59 QGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLP---QGP 115
+GP +G L GP L G P+GP P+G P+G L GP GP
Sbjct: 56 EGPRGEKGDPGLPGPMGLSGLPGPRGPVGPKGENGSAGEPGPKGERGLVGPPGSPGISGP 115
Query: 116 TLPQGPTLPQGPTLPQ---GPTLLQGPTLLQGPTLLQGPTLLQGPTLPQG 162
+GP+ QG PQ GP GP G +QG +GP P+G
Sbjct: 116 AGKEGPSGKQGNIGPQGKPGPKGEAGPKGEVGAPGMQGSAGAKGPAGPKG 165
>sp|Q9C0J8|WDR33_HUMAN pre-mRNA 3' end processing protein WDR33 OS=Homo sapiens GN=WDR33
PE=1 SV=2
Length = 1336
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 118 PQGPTLPQGPTLPQGPTLLQGPTLLQGPTLLQGPTLLQGPTLPQGPTLLQGPTLLQGPRK 177
PQGP QG P GP +QGP G G +QGP + QGP + P +QGP
Sbjct: 731 PQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGP-VSQGPLMGLNPRGMQGP-P 788
Query: 178 GPTLPQGPTLPQGPTLPQDPTLLQDP 203
GP QGP PQG + P ++ P
Sbjct: 789 GPRENQGPA-PQGMIMGHPPQEMRGP 813
>sp|Q6P4Z2|CO2A1_XENTR Collagen alpha-1(II) chain OS=Xenopus tropicalis GN=col2a1 PE=2
SV=1
Length = 1492
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 68/175 (38%), Gaps = 19/175 (10%)
Query: 52 LQGPTLL---------QGPTLPQGPTLLQGPTLLQGPTLPQGPTLPQGPTLLQDPTLPQG 102
LQGP L +G T P GP QGP LQG +G GP + T +G
Sbjct: 720 LQGPRGLPGTPGTDGPKGATGPSGPNGAQGPPGLQGMPGERGAAGISGPKGDRGDTGEKG 779
Query: 103 PTLLQGPTLPQGPTLPQGPTLP---------QGPTLPQGPTLLQGPTLLQGPTLLQGPTL 153
P G +G T P GP P GP+ P G +G +G T GP
Sbjct: 780 PEGAPGKDGSRGLTGPIGPPGPSGPNGEKGESGPSGPAGIVGARGAPGDRGETGPPGPAG 839
Query: 154 LQGPTLPQGPTLLQGPTLLQGPRKGPTLPQGPTLPQGPTLPQDPTLLQDPTLLQG 208
GP G L+G G +KG GP P G PQ PT + P +G
Sbjct: 840 FAGPPGADGQAGLKGDQGESG-QKGDAGAPGPQGPSGAPGPQGPTGVNGPKGARG 893
>sp|Q58A44|PCOTH_HUMAN Protein PCOTH OS=Homo sapiens GN=PCOTH PE=2 SV=2
Length = 107
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 79 PTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPT 134
P +P+ P P GP P P GP GP P P P+GP LP GP+ P GPT
Sbjct: 47 PLIPRTPGSPWGPV---GPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPT 99
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 79 PTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQGPTLLQG 138
P P P P P + + P P GP GP P GP P GP P P P+GP L G
Sbjct: 35 PIFPFSPRSPFQPLIPRTPGSPWGPV---GPASPLGPGFPIGPMGPGKPVGPKGPMLPLG 91
Query: 139 PTLLQGPT 146
P+ GPT
Sbjct: 92 PSGPVGPT 99
>sp|P08123|CO1A2_HUMAN Collagen alpha-2(I) chain OS=Homo sapiens GN=COL1A2 PE=1 SV=7
Length = 1366
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 72 GPTLLQGPTLPQGPTLPQGPTLLQDPTLPQGPTLLQGPTLPQGPTLPQGPTLPQGPTLPQ 131
GP G P GP P G + T P GP G P+GP+ PQG +G +
Sbjct: 955 GPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEK 1014
Query: 132 GPTLL---QGPTLLQG-PTLLQ-----------GPTLLQGPTLPQGPTLLQGPT 170
GP L +G LQG P + GP +GP P GP G T
Sbjct: 1015 GPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRT 1068
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,617,260
Number of Sequences: 539616
Number of extensions: 6604277
Number of successful extensions: 64706
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 758
Number of HSP's that attempted gapping in prelim test: 35364
Number of HSP's gapped (non-prelim): 10198
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)