Query psy13778
Match_columns 295
No_of_seqs 277 out of 3082
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 20:15:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3546|consensus 99.7 4.5E-15 9.8E-20 144.2 18.6 16 51-66 432-447 (1167)
2 KOG3546|consensus 99.6 1.7E-14 3.7E-19 140.2 18.2 15 50-64 434-448 (1167)
3 KOG3544|consensus 99.6 3.3E-14 7.2E-19 133.2 19.0 18 4-21 53-70 (327)
4 KOG3544|consensus 99.6 1.1E-14 2.4E-19 136.4 15.7 23 49-71 109-131 (327)
5 smart00110 C1Q Complement comp 14.0 60 0.0013 26.4 0.0 72 222-293 32-108 (135)
6 KOG3086|consensus 10.6 1.7E+02 0.0037 26.7 1.8 21 1-21 184-204 (296)
7 PF08199 E2: Bacteriophage E2- 8.6 1.3E+02 0.0027 18.5 0.1 8 3-10 24-31 (37)
8 smart00111 C4 C-terminal tande 6.9 2.8E+02 0.006 22.1 1.4 56 240-295 25-80 (114)
9 PRK10692 hypothetical protein; 4.3 1.4E+02 0.003 22.6 -1.6 23 272-294 46-76 (92)
10 PF08949 DUF1860: Domain of un 4.2 2.9E+02 0.0063 23.1 0.0 18 55-72 1-18 (220)
No 1
>KOG3546|consensus
Probab=99.66 E-value=4.5e-15 Score=144.16 Aligned_cols=16 Identities=25% Similarity=0.108 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCCCCCC
Q psy13778 51 LLQGPTLLQGPTLPQG 66 (295)
Q Consensus 51 ~~~G~~G~~G~~G~~G 66 (295)
+++|++|++|.+|.+|
T Consensus 432 gppgppgppg~pg~pg 447 (1167)
T KOG3546|consen 432 GPPGPPGPPGVPGLPG 447 (1167)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 3444444444433333
No 2
>KOG3546|consensus
Probab=99.63 E-value=1.7e-14 Score=140.22 Aligned_cols=15 Identities=20% Similarity=0.095 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCCCC
Q psy13778 50 TLLQGPTLLQGPTLP 64 (295)
Q Consensus 50 ~~~~G~~G~~G~~G~ 64 (295)
.+++|++|.+|.+|.
T Consensus 434 pgppgppg~pg~pg~ 448 (1167)
T KOG3546|consen 434 PGPPGPPGVPGLPGE 448 (1167)
T ss_pred CCCCCCCCCCCCCCC
Confidence 444444444444443
No 3
>KOG3544|consensus
Probab=99.62 E-value=3.3e-14 Score=133.19 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=14.1
Q ss_pred cCcccccccccccCCCCC
Q psy13778 4 DQCYYRVRCRYTRYPPPH 21 (295)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (295)
++|+.+...+|.+++...
T Consensus 53 ~~~~~~~~~~~~~~~~~~ 70 (327)
T KOG3544|consen 53 GFFGERGDPGWPGPTGPP 70 (327)
T ss_pred cccccccccccccccccc
Confidence 578888889999877553
No 4
>KOG3544|consensus
Probab=99.62 E-value=1.1e-14 Score=136.39 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=12.7
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCC
Q psy13778 49 WTLLQGPTLLQGPTLPQGPTLLQ 71 (295)
Q Consensus 49 ~~~~~G~~G~~G~~G~~G~~G~~ 71 (295)
..|++|++|++|.+|..|.+|.+
T Consensus 109 ~~cp~GppGp~G~pG~~G~pG~~ 131 (327)
T KOG3544|consen 109 EKCPPGPPGPPGPPGPPGPPGVP 131 (327)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Confidence 35556666665555555555544
No 5
>smart00110 C1Q Complement component C1q domain. Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Probab=14.00 E-value=60 Score=26.37 Aligned_cols=72 Identities=10% Similarity=0.030 Sum_probs=40.2
Q ss_pred cCCCccccccCCcccccCCCCCCceEEEeecccccCCCCCCCCcccc-----chHHHhhhhccccccCCCCCCCCeE
Q psy13778 222 YGETEDEEEESDTEDIRDDDDDDMEIVVCTSQDSEDLPGPSHSKRMR-----GTRELLTMKLDSCLHFPRQRGSPWT 293 (295)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-----~~r~~~~~~~~s~~~~~~~~~~~~~ 293 (295)
.+.....+..+..|++...+.|.+...+......+.+........+. ......++...+.+..|...|.+|.
T Consensus 32 ~N~g~~yd~~TG~Ftcpv~GvY~F~f~~~~~~~~~~v~L~~N~~~~~~~~~~~~~~~~~~~S~s~vL~L~~GD~Vwl 108 (135)
T smart00110 32 YNQQGHYDPRTGKFTCPVPGVYYFSYHVESKGRNVKVSLMKNGIQVMSTYDEYQKGLYDVASGGALLQLRQGDQVWL 108 (135)
T ss_pred ECCCCCccCCCCEEECeeceEEEEEEEEEEcCCEEEEEEEECCceeEEEEhhcCCCCceeecCcEEEEECCCCEEEE
Confidence 34444555677888999999987766654432222221111111111 0111345566788888889999995
No 6
>KOG3086|consensus
Probab=10.56 E-value=1.7e+02 Score=26.67 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.1
Q ss_pred CCCcCcccccccccccCCCCC
Q psy13778 1 MSSDQCYYRVRCRYTRYPPPH 21 (295)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (295)
+|||||-|-.+..++-|...+
T Consensus 184 vSSDFCHWG~RF~yt~Yd~s~ 204 (296)
T KOG3086|consen 184 VSSDFCHWGRRFSYTYYDHSQ 204 (296)
T ss_pred EeccccccccccccccccCCC
Confidence 589999999999999888664
No 7
>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage. The function of these proteins is unknown.
Probab=8.58 E-value=1.3e+02 Score=18.47 Aligned_cols=8 Identities=38% Similarity=0.804 Sum_probs=0.0
Q ss_pred CcCccccc
Q psy13778 3 SDQCYYRV 10 (295)
Q Consensus 3 ~~~~~~~~ 10 (295)
|+||+|.+
T Consensus 24 snfc~ynf 31 (37)
T PF08199_consen 24 SNFCHYNF 31 (37)
T ss_pred ccceeeee
No 8
>smart00111 C4 C-terminal tandem repeated domain in type 4 procollagens. Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Probab=6.91 E-value=2.8e+02 Score=22.08 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=0.0
Q ss_pred CCCCCceEEEeecccccCCCCCCCCccccchHHHhhhhccccccCCCCCCCCeEeC
Q psy13778 240 DDDDDMEIVVCTSQDSEDLPGPSHSKRMRGTRELLTMKLDSCLHFPRQRGSPWTVS 295 (295)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~r~~~~~~~~s~~~~~~~~~~~~~~~ 295 (295)
.++.-+.+..+.....++|..+-.--+.+.+..++.+....++++..+++..+|||
T Consensus 25 ~GyS~l~~tg~~~g~gQdL~spGSCL~~F~~~Pfi~C~~~~~C~y~~rn~~SfWLs 80 (114)
T smart00111 25 TGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80 (114)
T ss_pred cceeEEEecCCCCccCCCCCCCccchhhhccCCeEEECCCCeecccccCCcceEEe
No 9
>PRK10692 hypothetical protein; Provisional
Probab=4.31 E-value=1.4e+02 Score=22.63 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHhhhhccccccCCCCC--------CCCeEe
Q psy13778 272 ELLTMKLDSCLHFPRQR--------GSPWTV 294 (295)
Q Consensus 272 ~~~~~~~~s~~~~~~~~--------~~~~~~ 294 (295)
.++..+++..++++..+ |.||||
T Consensus 46 al~~IFiGAllWL~GArigGRE~VaDRYwwv 76 (92)
T PRK10692 46 ALLSIFVGALLWLAGARVGGREQVADRYWWV 76 (92)
T ss_pred HHHHHHHHHHHHHhcccccCcchhhhhHHHH
No 10
>PF08949 DUF1860: Domain of unknown function (DUF1860); InterPro: IPR015044 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the C terminus of bacteriophage spike proteins []. ; PDB: 1YQ8_A 1YQ5_A 1YQ6_B.
Probab=4.21 E-value=2.9e+02 Score=23.08 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q psy13778 55 PTLLQGPTLPQGPTLLQG 72 (295)
Q Consensus 55 ~~G~~G~~G~~G~~G~~G 72 (295)
|.|.+|.+|.+|++|+.|
T Consensus 1 psgikgdkgdpg~pgpag 18 (220)
T PF08949_consen 1 PSGIKGDKGDPGEPGPAG 18 (220)
T ss_dssp ------------------
T ss_pred CCCccCCCCCCCCCCCCC
Done!