Query psy13778
Match_columns 295
No_of_seqs 277 out of 3082
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 20:16:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wck_A BCLA protein; collagen- 98.9 1.3E-10 4.4E-15 102.1 -1.9 21 231-251 122-142 (220)
2 1o91_A Collagen alpha 1(VIII) 87.5 0.02 6.8E-07 48.1 -4.6 67 227-293 79-150 (178)
3 4ae2_A Procollagen III, collag 47.8 7.9 0.00027 33.8 2.0 33 255-293 37-69 (256)
4 1t60_A Type IV collagen; basem 7.2 68 0.0023 27.5 -0.9 51 245-295 34-84 (229)
5 1buu_A Protein (mannose-bindin 7.1 96 0.0033 24.3 0.0 16 53-68 3-18 (168)
6 1av3_A Kappa-PVIIA; kappa-cono 5.6 2.2E+02 0.0074 15.3 0.9 13 4-16 13-25 (27)
7 1t60_C Type IV collagen; basem 4.1 1.3E+02 0.0045 25.7 -1.0 51 245-295 33-83 (227)
8 1gr3_A Collagen X; extracellul 3.7 64 0.0022 25.8 -3.2 78 216-293 50-132 (160)
9 2wnv_C C1Q chain C, complement 2.8 1.1E+02 0.0039 23.2 -2.6 77 216-293 25-105 (131)
10 4dou_A Adiponectin; single-cha 1.7 2.3E+02 0.0079 26.5 -2.8 78 216-293 186-268 (442)
No 1
>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis}
Probab=98.86 E-value=1.3e-10 Score=102.07 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=13.3
Q ss_pred cCCcccccCCCCCCceEEEee
Q psy13778 231 ESDTEDIRDDDDDDMEIVVCT 251 (295)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~ 251 (295)
..+.+++...++|.+.+.+++
T Consensus 122 ~~~~f~~~~~G~Y~is~~~~t 142 (220)
T 1wck_A 122 DADTFVISETGFYKITVIANT 142 (220)
T ss_dssp ETTEEEECSCEEEEEEEEEEB
T ss_pred cccceEEecCcEEEEEEEEec
Confidence 345666777777766665554
No 2
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=87.46 E-value=0.02 Score=48.07 Aligned_cols=67 Identities=7% Similarity=-0.068 Sum_probs=32.9
Q ss_pred cccccCCcccccCCCCCCceEEEeecccccCCCCCCCCccccc-----hHHHhhhhccccccCCCCCCCCeE
Q psy13778 227 DEEEESDTEDIRDDDDDDMEIVVCTSQDSEDLPGPSHSKRMRG-----TRELLTMKLDSCLHFPRQRGSPWT 293 (295)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~r~~~~~~~~s~~~~~~~~~~~~~ 293 (295)
.....+..|++...+.|.+.+.+......+.+........+.. .....++...+.+..|...|.+|.
T Consensus 79 ~Yn~~TG~FTaPv~GvY~Fsft~~~~~~~~~v~L~~Ng~~i~~~~~~~~~~~~~~~S~s~vL~L~~GD~Vwl 150 (178)
T 1o91_A 79 NYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPMMYTYDEYKKGFLDQASGSAVLLLRPGDQVFL 150 (178)
T ss_dssp CEETTTTEEECCSCEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEECCBTTBCEEEEEEEEEEECTTCEEEE
T ss_pred ceeCCCCEEEcccCeEEEEEEEEEeccceEEEEEEECCEEEEEEEcccCCCcceEEeEEEEEEECCCCEEEE
Confidence 3345667788888888877665443211111111111111100 111223344466677778888886
No 3
>4ae2_A Procollagen III, collagen alpha-1(III) chain; structural protein, fibrillar collagen, extracellular matrix fibrosis; 1.68A {Homo sapiens} PDB: 4aej_A* 4ak3_A
Probab=47.75 E-value=7.9 Score=33.83 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=16.3
Q ss_pred ccCCCCCCCCccccchHHHhhhhccccccCCCCCCCCeE
Q psy13778 255 SEDLPGPSHSKRMRGTRELLTMKLDSCLHFPRQRGSPWT 293 (295)
Q Consensus 255 ~~~~~~~~~~~r~~~~r~~~~~~~~s~~~~~~~~~~~~~ 293 (295)
.+..+...+.+.+|+|++++.+ +.-..+|.|||
T Consensus 37 ~~~~P~Gt~~nPARtC~dl~~~------~p~~~sG~YwI 69 (256)
T 4ae2_A 37 SLISPDGSRKNPARNCRDLKFC------HPELKSGEYWV 69 (256)
T ss_dssp ----CCSSSSSCBSCHHHHHHH------CTTCCSEEEEE
T ss_pred hccCCCCCCCCccccHHHHHHc------CCCCCCCCEEE
Confidence 3344444455555555555433 44456788886
No 4
>1t60_A Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} SCOP: d.169.1.6 d.169.1.6 PDB: 1m3d_A 1t61_A 1li1_A
Probab=7.22 E-value=68 Score=27.49 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred ceEEEeecccccCCCCCCCCccccchHHHhhhhccccccCCCCCCCCeEeC
Q psy13778 245 MEIVVCTSQDSEDLPGPSHSKRMRGTRELLTMKLDSCLHFPRQRGSPWTVS 295 (295)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~r~~~~r~~~~~~~~s~~~~~~~~~~~~~~~ 295 (295)
+.+.-+.....++|.....--+.+.+..++.+.++..+++..++|..||||
T Consensus 34 l~~~g~~~~~gQDLG~~gSCl~rFstmPf~~C~~~~vC~~a~rnd~SyWLs 84 (229)
T 1t60_A 34 LYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLS 84 (229)
T ss_dssp EEEEETTEEEECCTTSGGGEESSCCSCCEEEECTTSCEEESCSCCEEEEEB
T ss_pred EEeecCCcccCcccCCCcchhccccCCCceEeCCCCeecccccCCcceeec
No 5
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=7.06 E-value=96 Score=24.31 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q psy13778 53 QGPTLLQGPTLPQGPT 68 (295)
Q Consensus 53 ~G~~G~~G~~G~~G~~ 68 (295)
.|++|++|.+|.+|.+
T Consensus 3 ~~~~g~~g~~g~~g~~ 18 (168)
T 1buu_A 3 EVSQGPKGQKGDRGDS 18 (168)
T ss_dssp ----------------
T ss_pred CCCCCCCCCCCCCCCc
No 6
>1av3_A Kappa-PVIIA; kappa-conotoxin, potassium channel blocker, cystine knot; HET: HYP; NMR {Conus purpurascens} SCOP: g.3.6.1 PDB: 1kcp_A*
Probab=5.60 E-value=2.2e+02 Score=15.35 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=0.0
Q ss_pred cCccccccccccc
Q psy13778 4 DQCYYRVRCRYTR 16 (295)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (295)
|+|..|..++|..
T Consensus 13 ddccsrkcnrfnk 25 (27)
T 1av3_A 13 DDCCSRKCNRFNK 25 (27)
T ss_dssp CCBSSCCBCTTSB
T ss_pred HHHHHHHhhhhhc
No 7
>1t60_C Type IV collagen; basement membrane, NC1 domain, structural protein; 1.50A {Bos taurus} PDB: 1m3d_C 1t61_C 1li1_C
Probab=4.08 E-value=1.3e+02 Score=25.66 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=0.0
Q ss_pred ceEEEeecccccCCCCCCCCccccchHHHhhhhccccccCCCCCCCCeEeC
Q psy13778 245 MEIVVCTSQDSEDLPGPSHSKRMRGTRELLTMKLDSCLHFPRQRGSPWTVS 295 (295)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~r~~~~r~~~~~~~~s~~~~~~~~~~~~~~~ 295 (295)
+.+..+.....++|...-.--+.+.+..++.+..+..+++..+++..||||
T Consensus 33 l~~~g~~~~~gQdLgs~GSCL~~Fst~Pf~~C~~~~~C~yasrnd~SyWLs 83 (227)
T 1t60_C 33 LYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLS 83 (227)
T ss_dssp EEEEETTEEEECCTTSGGGEESSCCSCCEEEEETTTEEEESCSSCEEEEEB
T ss_pred eeeccCCcccCCcCCCCcchhhhhcCCCceEeCCCCeecccccCCcceecc
No 8
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=3.68 E-value=64 Score=25.78 Aligned_cols=78 Identities=8% Similarity=-0.037 Sum_probs=0.0
Q ss_pred cccccccCCCccccccCCcccccCCCCCCceEEEeecccccCCCCCCCCccccchHH-----HhhhhccccccCCCCCCC
Q psy13778 216 LVERSAYGETEDEEEESDTEDIRDDDDDDMEIVVCTSQDSEDLPGPSHSKRMRGTRE-----LLTMKLDSCLHFPRQRGS 290 (295)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~r~-----~~~~~~~s~~~~~~~~~~ 290 (295)
.++....+........+..|++...+.|.+.+.+......+.+........+....+ ..++...+.+..|...|.
T Consensus 50 ~Fd~v~~N~Gn~yn~~TG~FtaPv~GvY~Fsft~~~~~~~~~v~L~~Ng~~i~~~~~~~~~~~~~~~S~s~vL~L~~GD~ 129 (160)
T 1gr3_A 50 PFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKNGTPVMYTYDEYTKGYLDQASGSAIIDLTENDQ 129 (160)
T ss_dssp CCCEEEECTTCCEETTTTEEECSSCEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEECCBTTBCEEEEEEEEEEECTTCE
T ss_pred EcCEEEECCCCceeCCCCEEEcccCCEEEEEEEEEeCCCeEEEEEEECCEEEEEEeeccCCCcccEEeEEEEEEECCCCE
Q ss_pred CeE
Q psy13778 291 PWT 293 (295)
Q Consensus 291 ~~~ 293 (295)
+|.
T Consensus 130 Vwv 132 (160)
T 1gr3_A 130 VWL 132 (160)
T ss_dssp EEE
T ss_pred EEE
No 9
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=2.75 E-value=1.1e+02 Score=23.21 Aligned_cols=77 Identities=4% Similarity=-0.143 Sum_probs=0.0
Q ss_pred cccccccCCCccccccCCcccccCCCCCCceEEEeecccccCCCCCCCCccccchHH----HhhhhccccccCCCCCCCC
Q psy13778 216 LVERSAYGETEDEEEESDTEDIRDDDDDDMEIVVCTSQDSEDLPGPSHSKRMRGTRE----LLTMKLDSCLHFPRQRGSP 291 (295)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~r~----~~~~~~~s~~~~~~~~~~~ 291 (295)
.++....+........+..|++...+.|.+...+.... .+.+.............+ ..++...+.+..|...|.+
T Consensus 25 ~Fd~v~~N~G~~yn~~TG~Ftap~~G~Y~Fs~~~~~~~-~~~v~L~~Ng~~~~~~~~~~~~~~~~~S~~~~L~L~~GD~V 103 (131)
T 2wnv_C 25 RFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTA-NLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEV 103 (131)
T ss_dssp CCCEEEECTTCCEETTTTEEECSSCEEEEEEEEEEESS-CEEEEEEETTEEEEEEEECCSSSCEEEEEEEEEEECTTCEE
T ss_pred EeCeEEECCCCCccCCCCEEEcccCCEEEEEEEEEECC-eEEEEEEECCeEEEEEEecCCCcccEEeeeEEEEECCCCEE
Q ss_pred eE
Q psy13778 292 WT 293 (295)
Q Consensus 292 ~~ 293 (295)
|.
T Consensus 104 ~v 105 (131)
T 2wnv_C 104 WL 105 (131)
T ss_dssp EE
T ss_pred EE
No 10
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=1.66 E-value=2.3e+02 Score=26.47 Aligned_cols=78 Identities=9% Similarity=-0.024 Sum_probs=0.0
Q ss_pred cccccccCCCccccccCCcccccCCCCCCceEEEeecccccCCCCCCCCccccch-----HHHhhhhccccccCCCCCCC
Q psy13778 216 LVERSAYGETEDEEEESDTEDIRDDDDDDMEIVVCTSQDSEDLPGPSHSKRMRGT-----RELLTMKLDSCLHFPRQRGS 290 (295)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----r~~~~~~~~s~~~~~~~~~~ 290 (295)
.+.....+........+..|++...+.|.+.+.+......+.+........+... ....++...+.+.-|...|.
T Consensus 186 ~Fd~v~~N~g~~Yn~~TG~Ftcpv~GvY~Fs~~~~~~~~~~~v~L~~Ng~~~~~~~~~~~~~~~~~aS~s~vL~L~~GD~ 265 (442)
T 4dou_A 186 RFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDKAMLFTYDQYQENNVDQASGSVLLHLEVGDQ 265 (442)
T ss_dssp CCCEEEECTTCCEETTTTEEECCSCEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEECCBTTBCEEEEEEEEEEECTTCE
T ss_pred EeCeEEECCCCCccCCCCeEeCccceEEEEEEEEEECCCEEEEEEEECCEEEEEEEccCCCCccccccceEEEEECCCCE
Q ss_pred CeE
Q psy13778 291 PWT 293 (295)
Q Consensus 291 ~~~ 293 (295)
+|.
T Consensus 266 Vwl 268 (442)
T 4dou_A 266 VWL 268 (442)
T ss_dssp EEE
T ss_pred EEE
Done!