Query psy13778
Match_columns 295
No_of_seqs 277 out of 3082
Neff 7.4
Searched_HMMs 13730
Date Fri Aug 16 20:16:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13778.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13778hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kcpa_ g.3.6.1 (A:) Conotoxin 5.6 1E+02 0.0074 15.3 0.9 13 4-16 13-25 (27)
2 d1t61a1 d.169.1.6 (A:6-114) No 5.1 47 0.0034 23.3 -1.0 41 255-295 39-79 (109)
3 d1a6bb_ g.40.1.1 (B:) Zinc fin 3.3 1.8E+02 0.013 16.1 0.8 15 2-16 9-24 (40)
4 d1t61c1 d.169.1.6 (C:6-114) No 3.1 84 0.0061 21.9 -1.0 40 256-295 39-78 (109)
5 d1t61a2 d.169.1.6 (A:115-225) 2.2 1.3E+02 0.0097 20.8 -0.8 39 256-295 42-80 (111)
6 d2dlba1 b.174.1.1 (A:2002-2071 1.9 4.7E+02 0.034 15.4 1.5 27 266-292 26-52 (70)
7 d1t61c2 d.169.1.6 (C:115-225) 1.7 2E+02 0.014 19.9 -0.7 39 256-295 39-78 (111)
8 d1fmka1 b.34.2.1 (A:82-145) c- 1.6 4.8E+02 0.035 15.1 1.2 18 277-294 22-39 (64)
9 d1awwa_ b.34.2.1 (A:) Bruton's 1.6 4.9E+02 0.036 15.2 1.2 13 281-293 32-44 (67)
10 d2rn8a1 b.34.2.1 (A:176-228) B 1.3 5.2E+02 0.038 14.3 0.9 12 282-293 23-34 (53)
No 1
>d1kcpa_ g.3.6.1 (A:) Conotoxin {Conus purpurascens, kappa-pVIIa [TaxId: 41690]}
Probab=5.63 E-value=1e+02 Score=15.35 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=9.4
Q ss_pred cCccccccccccc
Q psy13778 4 DQCYYRVRCRYTR 16 (295)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (295)
|+|..|..++|..
T Consensus 13 ddccsrkcnrfnk 25 (27)
T d1kcpa_ 13 DDCCSRKCNRFNK 25 (27)
T ss_dssp CCBTTSCBCTTSB
T ss_pred HHHHHHHhhhhhc
Confidence 6788888877653
No 2
>d1t61a1 d.169.1.6 (A:6-114) Noncollagenous (NC1) domain of collagen IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.10 E-value=47 Score=23.33 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=24.4
Q ss_pred ccCCCCCCCCccccchHHHhhhhccccccCCCCCCCCeEeC
Q psy13778 255 SEDLPGPSHSKRMRGTRELLTMKLDSCLHFPRQRGSPWTVS 295 (295)
Q Consensus 255 ~~~~~~~~~~~r~~~~r~~~~~~~~s~~~~~~~~~~~~~~~ 295 (295)
.++|..+..--+.+.+..++.+.....+++..+++..||||
T Consensus 39 GQdLgspGSCL~~F~~~PFi~C~~~~~C~~~~~n~~S~WLs 79 (109)
T d1t61a1 39 GQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLS 79 (109)
T ss_dssp ECCTTSGGGEESSCCSCCEEEECTTSEEEESCSSCEEEEEB
T ss_pred CcccCCCccchhhccCCCcEEECCCCccccccCCCceEEee
Confidence 34444433333455566666666677777777777666664
No 3
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=3.27 E-value=1.8e+02 Score=16.12 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=7.4
Q ss_pred CCcCccccc-cccccc
Q psy13778 2 SSDQCYYRV-RCRYTR 16 (295)
Q Consensus 2 ~~~~~~~~~-~~~~~~ 16 (295)
.+|||-|+. .+.|.+
T Consensus 9 ~kDQCAyCke~GHW~~ 24 (40)
T d1a6bb_ 9 DRDQCAYCKEKGHWAK 24 (40)
T ss_dssp CSSSCSSSCCTTCCTT
T ss_pred cchhhHHHhhcCchhh
Confidence 456665543 334443
No 4
>d1t61c1 d.169.1.6 (C:6-114) Noncollagenous (NC1) domain of collagen IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.06 E-value=84 Score=21.89 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=22.9
Q ss_pred cCCCCCCCCccccchHHHhhhhccccccCCCCCCCCeEeC
Q psy13778 256 EDLPGPSHSKRMRGTRELLTMKLDSCLHFPRQRGSPWTVS 295 (295)
Q Consensus 256 ~~~~~~~~~~r~~~~r~~~~~~~~s~~~~~~~~~~~~~~~ 295 (295)
++|..+..--+.+.+..++.+.....+++..+++..||||
T Consensus 39 QdLgspGSCL~~Fr~~PfieC~~~~~C~~~~~n~~SyWLs 78 (109)
T d1t61c1 39 QDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLS 78 (109)
T ss_dssp CCTTSGGGEESSCCSCCEEEEETTTEEEESCSSCEEEEEB
T ss_pred cccCCCccccccccCCCcEEECCCCccccccCCCccEeee
Confidence 3343333333455566666666667777776666666664
No 5
>d1t61a2 d.169.1.6 (A:115-225) Noncollagenous (NC1) domain of collagen IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.24 E-value=1.3e+02 Score=20.85 Aligned_cols=39 Identities=5% Similarity=0.083 Sum_probs=22.8
Q ss_pred cCCCCCCCCccccchHHHhhhhccccccCCCCCCCCeEeC
Q psy13778 256 EDLPGPSHSKRMRGTRELLTMKLDSCLHFPRQRGSPWTVS 295 (295)
Q Consensus 256 ~~~~~~~~~~r~~~~r~~~~~~~~s~~~~~~~~~~~~~~~ 295 (295)
++|..+..--+.+.+..++.+....++++.. ++..||||
T Consensus 42 QdLgspGSCL~~F~~~Pfi~C~~~g~C~y~~-n~~SyWLs 80 (111)
T d1t61a2 42 QALASPGSCLEEFRSAPFIECHGRGTCNYYA-NAYSFWLA 80 (111)
T ss_dssp CCTTSGGGEESSCCSSCEEEEETTSEEECCT-TCEEEEEB
T ss_pred cCCCCCcchHHhccCCCcEEECCCCcCCccC-CCCceEEe
Confidence 4444444334555666667766677788865 55555564
No 6
>d2dlba1 b.174.1.1 (A:2002-2071) Uncharacterized protein YopT {Bacillus subtilis [TaxId: 1423]}
Probab=1.89 E-value=4.7e+02 Score=15.45 Aligned_cols=27 Identities=22% Similarity=0.107 Sum_probs=21.2
Q ss_pred cccchHHHhhhhccccccCCCCCCCCe
Q psy13778 266 RMRGTRELLTMKLDSCLHFPRQRGSPW 292 (295)
Q Consensus 266 r~~~~r~~~~~~~~s~~~~~~~~~~~~ 292 (295)
....+|-|-+..+...+.|+..++|+-
T Consensus 26 etlvtricenlllskevsflkadgsve 52 (70)
T d2dlba1 26 ETLVTRICENLLLSKEVSFLKADGSVE 52 (70)
T ss_dssp HHHHHHHHHTTTTCSEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHhhhhhheeecCCcee
Confidence 345677788888888899998888864
No 7
>d1t61c2 d.169.1.6 (C:115-225) Noncollagenous (NC1) domain of collagen IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.67 E-value=2e+02 Score=19.87 Aligned_cols=39 Identities=8% Similarity=0.119 Sum_probs=20.7
Q ss_pred cCCCCCCCCccccchHHHhhhh-ccccccCCCCCCCCeEeC
Q psy13778 256 EDLPGPSHSKRMRGTRELLTMK-LDSCLHFPRQRGSPWTVS 295 (295)
Q Consensus 256 ~~~~~~~~~~r~~~~r~~~~~~-~~s~~~~~~~~~~~~~~~ 295 (295)
++|..+-.--+.+.+..++.+. ...++++.+ ++..||||
T Consensus 39 QdLgspGSCL~~F~~~Pfi~C~g~~g~C~y~~-n~~SyWLs 78 (111)
T d1t61c2 39 QSLVSPGSCLEDFRATPFIECNGARGTCHYYA-NKYSFWLT 78 (111)
T ss_dssp CCTTSGGGEESSCCSSCEEEECGGGCEEECCT-TCEEEEEB
T ss_pred cCCCCCcchHHhccCCCcEEECCCCCEecccC-CCCceEee
Confidence 4444433333455555666665 456777764 55555553
No 8
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.56 E-value=4.8e+02 Score=15.09 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=8.5
Q ss_pred hccccccCCCCCCCCeEe
Q psy13778 277 KLDSCLHFPRQRGSPWTV 294 (295)
Q Consensus 277 ~~~s~~~~~~~~~~~~~~ 294 (295)
..+..+.++.....-||+
T Consensus 22 ~~Gd~i~v~~~~~~~Ww~ 39 (64)
T d1fmka1 22 KKGERLQIVNNTEGDWWL 39 (64)
T ss_dssp CTTCEEEESCCCSSSEEE
T ss_pred CCCCEEEEEEEcCCCcEE
Confidence 333444445444455654
No 9
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.55 E-value=4.9e+02 Score=15.24 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=5.2
Q ss_pred cccCCCCCCCCeE
Q psy13778 281 CLHFPRQRGSPWT 293 (295)
Q Consensus 281 ~~~~~~~~~~~~~ 293 (295)
.+.++...+.-||
T Consensus 32 ~i~v~~~~~~~Ww 44 (67)
T d1awwa_ 32 EYFILEESNLPWW 44 (67)
T ss_dssp EEECCCCCSSSEE
T ss_pred EEEEEEEcCCCeE
Confidence 3333333344444
No 10
>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}
Probab=1.33 E-value=5.2e+02 Score=14.34 Aligned_cols=12 Identities=8% Similarity=0.119 Sum_probs=4.8
Q ss_pred ccCCCCCCCCeE
Q psy13778 282 LHFPRQRGSPWT 293 (295)
Q Consensus 282 ~~~~~~~~~~~~ 293 (295)
+.++...+.-||
T Consensus 23 ~~vl~~~~~~Ww 34 (53)
T d2rn8a1 23 YYLLDSSEIHWW 34 (53)
T ss_dssp EEECCCSCSSCE
T ss_pred EEEeEEcCCCeE
Confidence 333333344444
Done!