RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13778
         (295 letters)



>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 143

 Score = 29.4 bits (66), Expect = 0.22
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 210 RYKEKELVERSAYGETEDEEEESDTEDIRDDDDDDMEI--VVCTSQDSEDL 258
           +Y   E     AYGE  +  + ++T+     DDD+++   +    +D +D+
Sbjct: 93  KYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDDI 143


>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 26.7 bits (59), Expect = 1.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 227 DEEEESDTEDIRDDDDDD 244
           D E+  D +D  D ++D+
Sbjct: 3   DNEDNFDGDDFDDVEEDE 20


>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit
           {Methylococcus capsulatus [TaxId: 414]}
          Length = 384

 Score = 26.7 bits (59), Expect = 3.5
 Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 2/38 (5%)

Query: 14  YTRYPPPHPMWYAATAARRMSAW--FLAARELWNQIYW 49
             ++    P W   T   R   W         W+  Y 
Sbjct: 68  TQKFHGGRPSWGNETTELRTVDWFKHRDPLRRWHAPYV 105


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.137    0.435 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,103,583
Number of extensions: 51480
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 3
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)