BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13779
(692 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1
pdb|3E6U|C Chain C, Crystal Structure Of Human Lancl1
pdb|3E6U|B Chain B, Crystal Structure Of Human Lancl1
pdb|3E6U|D Chain D, Crystal Structure Of Human Lancl1
pdb|3E73|A Chain A, Crystal Structure Of Human Lancl1 Complexed With Gsh
pdb|3E73|B Chain B, Crystal Structure Of Human Lancl1 Complexed With Gsh
Length = 411
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 183/329 (55%), Gaps = 20/329 (6%)
Query: 205 LHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKY 264
L P F ++ + L++ ++ +++D D + Y G +G A+ Y Y D Y
Sbjct: 40 LTPEFSQRLTNKIRELLQQMERGLKSADP---RDGTGYTGWAGIAVLYLHLYDVFGDPAY 96
Query: 265 LDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALAPHL 324
L A +++SL L R +FL GDAGP+AV+A++Y + +++ E + +L HL
Sbjct: 97 LQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLI----HL 152
Query: 325 VDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKK-- 382
+ P+E+LYGR GY+Y+LLFVNK+ I S I+Q+ ++IL SG+NL ARK+
Sbjct: 153 NKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENL-ARKRNF 211
Query: 383 -SRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNV-LTDKERDTLVKPTLDALLHETFPSG 440
++ PL YEW+ + Y GAAHG+ GI + L++ ++ ++ + +LVKP++D + FPSG
Sbjct: 212 TAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSG 271
Query: 441 NLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEY 500
N G + D LV WCHG+PG +L AY+ + ++KYL + +D V W +G
Sbjct: 272 NYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCAD--VIWQYGLL-- 327
Query: 501 EWHDKNYYGAAHGVTGILFTLLKSNVLTD 529
K YG HG G + L LT
Sbjct: 328 ----KKGYGLCHGSAGNAYAFLTLYNLTQ 352
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 125/192 (65%), Gaps = 1/192 (0%)
Query: 500 YEWHDKNYYGAAHGVTGILFTLLKSNV-LTDKERDTLVKPTLDALLDETFPSGNLKSSHG 558
YEW+ + Y GAAHG+ GI + L++ ++ ++ + +LVKP++D + FPSGN G
Sbjct: 219 YEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIG 278
Query: 559 SDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVS 618
+ D LV WCHG+PG I +L AY+ + ++KYL + +D +W GLL+KGY LCHG +
Sbjct: 279 DNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSA 338
Query: 619 GNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDI 678
GNAYAFLT Y+ T + +YRA FA W Y +H TPD P+SL+EG G +FL D+
Sbjct: 339 GNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADL 398
Query: 679 LKPTNAKFPGYE 690
L PT A+FP +E
Sbjct: 399 LVPTKARFPAFE 410
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 83/125 (66%)
Query: 1 DRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNA 60
D LV WCHG+PG I +L AY+ + ++KYL + +D +W GLL+KGY LCHG AGNA
Sbjct: 282 DLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNA 341
Query: 61 YAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKP 120
YAFLT Y+ T + +YRA FA W Y +H TPD P+SL+EG G +FL D+L P
Sbjct: 342 YAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVP 401
Query: 121 TNAKW 125
T A++
Sbjct: 402 TKARF 406
>pdb|2G02|A Chain A, Nisin Cyclase
pdb|2G0D|A Chain A, Nisin Cyclase
Length = 409
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 567 WCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSG 619
WC+G PG L ++ ++D K ++ L Y +CHG SG
Sbjct: 277 WCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDSYMICHGYSG 329
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 6 WCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAG 58
WC+G PG L ++ ++D K ++ L Y +CHG +G
Sbjct: 277 WCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDSYMICHGYSG 329
>pdb|1TXJ|A Chain A, Crystal Structure Of Translationally Controlled Tumour-
Associated Protein (Tctp) From Plasmodium Knowlesi
Length = 171
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 215 ATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSK-YLDKAQKLIE 273
A + ++I+ +DS TS +YSVY+ Q + Y+ ++ + KAQ LI+
Sbjct: 63 ADVEQVIDIVDSFQLTSTSLSKKEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIK 122
Query: 274 RSLKNLKNRRFSF---LNGDAG 292
L N + F L+ DAG
Sbjct: 123 HILTNFDDFEFYMGESLDMDAG 144
>pdb|3L0M|A Chain A, Crystal Structure Of Rab1-Activation Domain And P4m Domain
Of SidmDRRA FROM LEGIONELLA
pdb|3L0M|B Chain B, Crystal Structure Of Rab1-Activation Domain And P4m Domain
Of SidmDRRA FROM LEGIONELLA
Length = 336
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 22/150 (14%)
Query: 48 KGYSLCHGVAGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNK------------HEDT 95
KGY++ + G A + A T + + V+ NK +E
Sbjct: 90 KGYAILQSLWGAASDYSRAAAT------LTESTVEPGLVSAVNKXSAFFXDCKLSPNERA 143
Query: 96 TPDRPYSLYEGK--VGVAFFLLDILKPTNAKWNQEYPNINIENLIAHLMRERTD--YDTD 151
TPD + + + K VG+ F+ D+ PT+ W + + A ER++ D
Sbjct: 144 TPDPDFKVGKSKILVGIXQFIKDVADPTSKIWXHNTKALXNHKIAAIQKLERSNNVNDET 203
Query: 152 YKSLMLFHSYEIKTARSVKMETKHSSRHHQ 181
+S++ + S K TK R H+
Sbjct: 204 LESVLSSKGENLSEYLSYKYATKDEGREHR 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,414,139
Number of Sequences: 62578
Number of extensions: 973620
Number of successful extensions: 2590
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2564
Number of HSP's gapped (non-prelim): 32
length of query: 692
length of database: 14,973,337
effective HSP length: 106
effective length of query: 586
effective length of database: 8,340,069
effective search space: 4887280434
effective search space used: 4887280434
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)