Query psy13779
Match_columns 692
No_of_seqs 471 out of 1167
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 20:17:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2787|consensus 100.0 4.6E-77 1E-81 590.3 33.7 400 175-691 1-403 (403)
2 KOG2787|consensus 100.0 1.2E-52 2.7E-57 416.4 9.7 130 1-134 273-403 (403)
3 cd04794 euk_LANCL eukaryotic L 100.0 5E-47 1.1E-51 408.9 33.9 335 242-687 1-343 (343)
4 PF05147 LANC_like: Lanthionin 100.0 1.6E-40 3.4E-45 360.0 16.5 340 236-689 2-353 (355)
5 cd04434 LanC_like LanC-like pr 100.0 1.8E-36 3.9E-41 326.0 33.0 325 242-681 1-336 (343)
6 cd04793 LanC LanC is the cycla 100.0 3.1E-35 6.8E-40 322.0 31.9 335 242-682 1-373 (382)
7 cd04792 LanM-like LanM-like pr 100.0 1.9E-34 4.1E-39 345.3 33.0 325 235-684 483-821 (825)
8 COG4403 LcnDR2 Lantibiotic mod 100.0 6.3E-34 1.4E-38 316.3 22.8 311 235-683 639-955 (963)
9 cd04791 LanC_SerThrkinase Lant 100.0 1.2E-32 2.6E-37 294.5 28.5 311 242-688 1-321 (321)
10 cd04794 euk_LANCL eukaryotic L 99.9 5.3E-28 1.1E-32 261.0 12.6 124 2-125 218-342 (343)
11 cd04434 LanC_like LanC-like pr 99.9 9.6E-25 2.1E-29 234.8 26.8 278 237-630 44-336 (343)
12 cd04792 LanM-like LanM-like pr 99.9 8.5E-24 1.8E-28 253.6 29.4 264 237-631 535-819 (825)
13 cd04793 LanC LanC is the cycla 99.9 2.3E-22 5E-27 220.3 27.1 299 237-631 43-373 (382)
14 cd04791 LanC_SerThrkinase Lant 99.9 9.7E-22 2.1E-26 210.3 24.6 255 236-629 37-313 (321)
15 PF05147 LANC_like: Lanthionin 99.9 9.1E-22 2E-26 213.2 18.3 285 217-632 34-347 (355)
16 COG4403 LcnDR2 Lantibiotic mod 99.8 2.6E-19 5.7E-24 200.4 20.8 303 236-635 643-958 (963)
17 COG1331 Highly conserved prote 97.5 0.05 1.1E-06 62.2 26.2 296 11-359 212-557 (667)
18 COG1331 Highly conserved prote 97.3 0.0058 1.3E-07 69.6 16.0 73 13-88 416-502 (667)
19 cd00249 AGE AGE domain; N-acyl 97.1 0.022 4.9E-07 62.4 17.5 249 402-650 54-337 (384)
20 cd00249 AGE AGE domain; N-acyl 96.8 0.25 5.4E-06 54.1 23.3 78 13-90 58-151 (384)
21 PF07470 Glyco_hydro_88: Glyco 96.3 0.3 6.6E-06 52.6 19.2 240 340-604 27-287 (336)
22 COG4225 Predicted unsaturated 96.1 0.24 5.3E-06 52.0 15.9 234 343-602 42-301 (357)
23 COG4225 Predicted unsaturated 96.0 0.24 5.3E-06 52.0 15.5 253 5-280 33-305 (357)
24 PF09492 Pec_lyase: Pectic aci 94.4 0.13 2.8E-06 53.6 7.7 134 514-649 41-212 (289)
25 PF07944 DUF1680: Putative gly 94.3 0.088 1.9E-06 60.3 7.1 73 13-85 130-206 (520)
26 PF07944 DUF1680: Putative gly 94.3 0.4 8.7E-06 55.0 12.4 118 527-646 75-206 (520)
27 PF00759 Glyco_hydro_9: Glycos 93.9 1.2 2.7E-05 49.8 15.2 72 13-86 159-247 (444)
28 TIGR02474 pec_lyase pectate ly 93.7 0.86 1.9E-05 47.6 12.1 134 514-649 46-217 (290)
29 PF07470 Glyco_hydro_88: Glyco 93.4 12 0.00027 40.1 21.3 111 250-363 32-150 (336)
30 PF03663 Glyco_hydro_76: Glyco 92.8 0.24 5.1E-06 54.3 6.9 77 13-89 160-256 (370)
31 COG3533 Uncharacterized protei 88.7 5.2 0.00011 44.5 12.0 136 508-647 66-210 (589)
32 PF03663 Glyco_hydro_76: Glyco 88.6 1.1 2.4E-05 49.0 7.3 75 13-88 93-189 (370)
33 PF07221 GlcNAc_2-epim: N-acyl 88.0 1 2.2E-05 48.7 6.4 77 13-90 86-175 (346)
34 TIGR02474 pec_lyase pectate ly 86.1 6.2 0.00013 41.3 10.5 138 459-599 45-213 (290)
35 COG3533 Uncharacterized protei 85.6 2.4 5.1E-05 47.0 7.3 82 4-86 124-210 (589)
36 PLN00119 endoglucanase 83.3 2.8 6E-05 47.3 7.0 68 12-81 181-264 (489)
37 PLN02345 endoglucanase 83.2 3.1 6.7E-05 46.8 7.3 66 13-80 147-228 (469)
38 PLN02266 endoglucanase 82.5 4.1 8.9E-05 46.2 7.9 70 13-84 195-282 (510)
39 PLN02308 endoglucanase 81.8 4.1 9E-05 46.1 7.6 73 12-84 176-264 (492)
40 PF07221 GlcNAc_2-epim: N-acyl 80.6 5.5 0.00012 43.0 8.0 77 13-90 26-116 (346)
41 PLN02420 endoglucanase 80.2 5.9 0.00013 45.1 8.2 72 13-84 192-278 (525)
42 PLN02613 endoglucanase 79.7 6.4 0.00014 44.6 8.2 68 13-82 177-257 (498)
43 PLN02993 lupeol synthase 74.1 69 0.0015 38.4 14.9 74 508-587 560-637 (763)
44 PLN02171 endoglucanase 71.5 14 0.0003 43.2 8.3 71 13-85 181-268 (629)
45 PLN03009 cellulase 71.4 10 0.00023 43.0 7.2 71 12-82 177-265 (495)
46 PLN02909 Endoglucanase 71.2 12 0.00026 42.3 7.5 67 13-81 185-264 (486)
47 PLN02340 endoglucanase 70.4 14 0.0003 43.0 8.0 71 12-84 180-266 (614)
48 PTZ00470 glycoside hydrolase f 68.7 17 0.00036 41.6 8.1 75 14-88 161-256 (522)
49 KOG2430|consensus 65.3 15 0.00033 38.6 6.2 83 7-89 183-283 (587)
50 PTZ00470 glycoside hydrolase f 63.0 8.2 0.00018 44.1 4.2 42 62-103 163-204 (522)
51 PLN02175 endoglucanase 62.5 23 0.00049 40.1 7.5 69 13-81 174-258 (484)
52 PF09492 Pec_lyase: Pectic aci 62.4 35 0.00076 35.9 8.4 147 402-549 40-216 (289)
53 PLN03012 Camelliol C synthase 61.9 87 0.0019 37.5 12.4 58 531-594 587-645 (759)
54 PF01532 Glyco_hydro_47: Glyco 61.1 16 0.00035 41.2 6.1 77 13-89 82-179 (452)
55 PF06662 C5-epim_C: D-glucuron 58.7 1.1E+02 0.0024 30.2 10.6 136 506-643 22-187 (189)
56 PLN02993 lupeol synthase 56.8 1.3E+02 0.0027 36.3 12.6 96 334-443 561-659 (763)
57 PF06662 C5-epim_C: D-glucuron 56.5 13 0.00029 36.4 3.9 27 14-40 36-62 (189)
58 KOG2431|consensus 53.1 12 0.00026 40.7 3.1 46 62-107 183-228 (546)
59 TIGR01787 squalene_cyclas squa 51.0 4.8E+02 0.01 30.8 18.7 26 530-555 456-481 (621)
60 KOG2244|consensus 49.4 37 0.00081 38.2 6.2 72 13-86 510-609 (786)
61 PRK11097 endo-1,4-D-glucanase; 47.8 67 0.0015 35.1 7.9 76 13-88 121-213 (376)
62 PF01532 Glyco_hydro_47: Glyco 47.7 13 0.00029 41.8 2.7 37 62-98 85-123 (452)
63 PF06917 Pectate_lyase_2: Peri 45.0 59 0.0013 36.4 6.9 93 12-106 388-492 (557)
64 cd02892 SQCY_1 Squalene cyclas 44.5 6E+02 0.013 30.0 18.8 40 516-555 455-497 (634)
65 PF13243 Prenyltrans_1: Prenyl 44.0 20 0.00043 31.2 2.7 20 536-555 1-20 (109)
66 KOG2429|consensus 43.4 46 0.00099 37.7 5.8 182 63-293 205-416 (622)
67 PLN03012 Camelliol C synthase 43.1 2.7E+02 0.0059 33.5 12.5 93 339-445 566-661 (759)
68 COG4833 Predicted glycosyl hyd 42.0 67 0.0014 33.1 6.2 91 27-119 165-279 (377)
69 TIGR03463 osq_cycl 2,3-oxidosq 37.0 3.6E+02 0.0079 31.8 12.4 144 401-556 451-605 (634)
70 KOG2430|consensus 36.9 1.4E+02 0.0031 31.6 7.9 84 568-651 183-284 (587)
71 KOG1157|consensus 36.2 40 0.00087 36.6 3.9 96 53-156 380-515 (543)
72 cd02892 SQCY_1 Squalene cyclas 33.8 6.5E+02 0.014 29.7 13.9 41 515-555 378-421 (634)
73 PF01270 Glyco_hydro_8: Glycos 31.6 1.4E+02 0.003 32.2 7.4 73 13-88 118-209 (342)
74 TIGR01507 hopene_cyclase squal 31.6 3.7E+02 0.008 31.8 11.3 141 403-555 383-540 (635)
75 cd02889 SQCY Squalene cyclase 30.2 6.8E+02 0.015 26.5 18.3 41 515-555 95-138 (348)
76 PF13249 Prenyltrans_2: Prenyl 29.1 88 0.0019 27.1 4.5 21 533-553 91-111 (113)
77 TIGR03463 osq_cycl 2,3-oxidosq 28.8 1E+03 0.022 28.1 20.4 47 510-556 449-499 (634)
78 COG5029 CAL1 Prenyltransferase 28.1 3.7E+02 0.0081 28.6 9.2 197 403-623 104-314 (342)
79 PF09986 DUF2225: Uncharacteri 28.1 3E+02 0.0065 27.6 8.5 71 245-317 117-191 (214)
80 PF00432 Prenyltrans: Prenyltr 26.1 42 0.00091 24.3 1.5 34 535-568 2-35 (44)
81 COG3531 Predicted protein-disu 21.7 48 0.001 32.6 1.3 11 1-11 9-19 (212)
82 PRK11097 endo-1,4-D-glucanase; 20.6 3.9E+02 0.0085 29.3 8.1 76 569-644 116-208 (376)
83 PF12060 DUF3541: Domain of un 20.3 97 0.0021 30.8 3.1 27 60-86 30-56 (227)
No 1
>KOG2787|consensus
Probab=100.00 E-value=4.6e-77 Score=590.28 Aligned_cols=400 Identities=39% Similarity=0.711 Sum_probs=350.3
Q ss_pred ccCCCCCCCCCCCCCCcccccccc-cccccccCchHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccccccHHHHHHHH
Q psy13779 175 HSSRHHQNKYKYGEGEKSKLFTVE-NKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYY 253 (692)
Q Consensus 175 ~~~r~~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sLY~G~aGIal~l~ 253 (692)
|+.|+|+|||||........+..+ ++...++-.++...+..+|++.+++...+ .+.-.+.|.++|+|++|||++++
T Consensus 1 me~r~~~np~pd~a~G~~e~~~~~~~e~~~~~~~e~~~r~~~~ikd~~~~~~~~---~S~d~~~d~tlYtG~~GiAfl~~ 77 (403)
T KOG2787|consen 1 MERRAFVNPFPDDASGENETVGSEPDEPTGKLFTEFIKRLATKIKDLVVEMTWG---KSGDEVRDGTLYTGWLGIAFLYL 77 (403)
T ss_pred CcccccCCCCcccccCCCccccCCCcccccccHHHHHHHHHHHHHHHHHHHHhc---ccCCCCcCCceeechHHHHHHHH
Confidence 788999999999654322221100 11011333456666666666666554444 22334889999999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHHH-HhhccCCcccccCChHHHHHHHHHHHHhCChHHHHHHHHHHHhhhhhhhcCCCCCC
Q psy13779 254 IYYQRTHDSKYLDKAQKLIERSL-KNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIP 332 (692)
Q Consensus 254 ~L~~~t~~~~yl~~A~~~i~~~l-~~~~~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 332 (692)
+++++|.|..++..+.++|++|. +..+.++++|+||.||++++.+++++.+++++.++.++.+++++.. .+++.|
T Consensus 78 kly~vTrd~~~L~~~~e~Vk~~~~~~~s~~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~----~~~dlp 153 (403)
T KOG2787|consen 78 KLYEVTRDLYDLLLCLEIVKACLVASRSSRRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRL----CSSDLP 153 (403)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhccccCceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhccc----CCcccc
Confidence 99999999999999999999998 5566789999999999999999999999999999999999987663 257889
Q ss_pred cccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcccccccCCccchhHHHHHHHh
Q psy13779 333 DEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLK 412 (692)
Q Consensus 333 ~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~~~lG~ahG~aGIl~~Ll~ 412 (692)
++++||++||+|+++++++.++.+++.++.|..|++.|+.+++.+++++.+++||||+||++.|+|++||++||+++|++
T Consensus 154 ~ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~ 233 (403)
T KOG2787|consen 154 DELLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMD 233 (403)
T ss_pred HHHHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998888899999999999999999999999999988
Q ss_pred hcccCchhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHhhcCcHHHHHHHHhccCCCcc
Q psy13779 413 SNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVS 492 (692)
Q Consensus 413 l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~~~~~~l~~~~~~~~~~~~ 492 (692)
..-
T Consensus 234 ~~L----------------------------------------------------------------------------- 236 (403)
T KOG2787|consen 234 PTL----------------------------------------------------------------------------- 236 (403)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 411
Q ss_pred cccCcccccccCCCccCcccchhHHHHHHHHcccCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCCch
Q psy13779 493 WSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHGSP 572 (692)
Q Consensus 493 w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~wCHG~~ 572 (692)
++..+...++++.+++|+++.++++||+|++.+++.|.+++||||+|
T Consensus 237 ---------------------------------~~d~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~drLVhWcHGAp 283 (403)
T KOG2787|consen 237 ---------------------------------KVDQPALLKDVKGSLDYMIQNRFPSGNYPSSEGNKRDRLVHWCHGAP 283 (403)
T ss_pred ---------------------------------CCcchhHHHhhhhHHHHHHHccCCCCCCCcccCCCcceeeeeccCCc
Confidence 11112346789999999999999999999999888899999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHcCCCCCCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-
Q psy13779 573 GFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYN- 651 (692)
Q Consensus 573 Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~g~~~~~~gLChG~aGi~~~ll~l~~~t~d~~~l~~a~~~~~~l~~~~- 651 (692)
|++++|.+++++|++++|++.+.++++.+|++|++++++|+|||+|||+|+||.+|+.|+|.+|++||++|++|++++.
T Consensus 284 Gv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLkkg~GichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae~lld~~~ 363 (403)
T KOG2787|consen 284 GVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLKKGVGICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAEWLLDYGF 363 (403)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccccCchhhhHhHHHHcCcHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCccccchHHHHHHHHHhhCCCCCCCCCccC
Q psy13779 652 KHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKFPGYED 691 (692)
Q Consensus 652 ~~~~~~p~~~~sL~~G~AGi~~~Ll~l~~p~~~~fp~~~~ 691 (692)
...++.||+|+|||+|+||.+|+|++++.|++++||+||+
T Consensus 364 ~~g~r~pDrpySLfeG~AG~v~~l~Dll~P~~arFP~~El 403 (403)
T KOG2787|consen 364 SHGCRTPDRPYSLFEGVAGTVYLLLDLLDPEQARFPGYEL 403 (403)
T ss_pred hccCCCCCCChhHHhcccchhhHhhhhcChhhccCCcCcC
Confidence 6678899999999999999999999999999999999985
No 2
>KOG2787|consensus
Probab=100.00 E-value=1.2e-52 Score=416.45 Aligned_cols=130 Identities=49% Similarity=1.014 Sum_probs=126.4
Q ss_pred CCccccccCchhHHHHHHHHHHHcCCHHHHHHHHHhhHHHHHhcccccCCcccccccchHHHHHHHHhhcCchhHHHHHH
Q psy13779 1 DRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNAYAFLTAYHTTHAEEQMYRAL 80 (692)
Q Consensus 1 ~~l~~wchgapg~~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~g~l~kg~~lchG~ag~~~~~l~~~~~t~~~~~l~ra~ 80 (692)
|+||||||||||++++|++|++||++++|+++|.+|+|+||++|||+||+|||||||||||+||.|||+|+|.+|||||+
T Consensus 273 drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLkkg~GichGvaGNaYvFLsLyRLT~d~kYlyRA~ 352 (403)
T KOG2787|consen 273 DRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLKKGVGICHGVAGNAYVFLSLYRLTGDMKYLYRAK 352 (403)
T ss_pred ceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccccCchhhhHhHHHHcCcHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC-CCCCCCCCCCCccccchHHHHHHHHhhcCCCcccccccCCCccH
Q psy13779 81 CFANWVTGYN-KHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKWNQEYPNINI 134 (692)
Q Consensus 81 ~~a~~~~~~~-~~~~~~~~~p~sl~eG~~G~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (692)
+||+||+++. .+++++||||||||||+||++|+|.|++.|++| .||++++
T Consensus 353 kFae~lld~~~~~g~r~pDrpySLfeG~AG~v~~l~Dll~P~~a----rFP~~El 403 (403)
T KOG2787|consen 353 KFAEWLLDYGFSHGCRTPDRPYSLFEGVAGTVYLLLDLLDPEQA----RFPGYEL 403 (403)
T ss_pred HHHHHHHhhhhhccCCCCCCChhHHhcccchhhHhhhhcChhhc----cCCcCcC
Confidence 9999999986 788999999999999999999999999999999 6798874
No 3
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=100.00 E-value=5e-47 Score=408.93 Aligned_cols=335 Identities=45% Similarity=0.824 Sum_probs=271.1
Q ss_pred ccccHHHHHHHHHHHhc----cCChHHHHHHHHHHHHHHHhhc-cCCcccccCChHHHHHHHHHHHHhCChHHHHHHHHH
Q psy13779 242 YVGTSGQAMFYYIYYQR----THDSKYLDKAQKLIERSLKNLK-NRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQK 316 (692)
Q Consensus 242 Y~G~aGIal~l~~L~~~----t~~~~yl~~A~~~i~~~l~~~~-~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l~~ 316 (692)
|+|.+||+++|++|++. +++++|++.|.++++.+.+.+. ...+|+++|.+|+++++..+++.+++++.++..++.
T Consensus 1 Y~G~~Gi~~~l~~l~~~~~~~~~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~G~aGi~~~l~~l~~~~~d~~~~~~~~~~ 80 (343)
T cd04794 1 YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPDDRRISFLCGNAGVYAVGAAVYHYLKDEDEVDEFLSK 80 (343)
T ss_pred CcChHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHhhcccccCCCccCCcHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 79999999999999999 9999999999999988876654 457899999999999999999999998877777666
Q ss_pred HHhhhhhhhcCCCCCCcccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcccccc
Q psy13779 317 LKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNY 396 (692)
Q Consensus 317 ~~~~~~~~~~~~~~~~~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~~~ 396 (692)
+..+.+..+......+.|+++|+||++++|+.+++.+++++...+.++++++.+++..+..........|.+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---- 156 (343)
T cd04794 81 FLQLLESVVSPDSGLPDELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWH---- 156 (343)
T ss_pred HHHHHHHHhhcccCCchhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc----
Confidence 6655543222123346799999999999999999998755444467788888888765432211111112222222
Q ss_pred cCCccchhHHHHHHHhhcccCchhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHhhcCc
Q psy13779 397 YGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYND 476 (692)
Q Consensus 397 lG~ahG~aGIl~~Ll~l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~~~ 476 (692)
T Consensus 157 -------------------------------------------------------------------------------- 156 (343)
T cd04794 157 -------------------------------------------------------------------------------- 156 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhccCCCcccccCcccccccCCCccCcccchhHHHHHHHHcccCCh-HHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy13779 477 KKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTD-KERDTLVKPTLDALLDETFPSGNLKS 555 (692)
Q Consensus 477 ~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~~-~~~~~~i~~~l~~l~~~~~~~g~w~~ 555 (692)
...++|||||++||+++|++++..++ +++.+.++++++++.+...++|+||+
T Consensus 157 ---------------------------~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~ 209 (343)
T cd04794 157 ---------------------------GKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPS 209 (343)
T ss_pred ---------------------------CceecchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCC
Confidence 22345777777777777776665544 36788999999999988766899998
Q ss_pred CCCCC-CCccccccCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHcCCCCCCCccccchHHHHHHHHHHHHhcCCH
Q psy13779 556 SHGSD-SDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAE 634 (692)
Q Consensus 556 ~~~~~-~~~~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~g~~~~~~gLChG~aGi~~~ll~l~~~t~d~ 634 (692)
..+.. .+..++||||++||+.+++.++++++|+++.+.+.++.+.+|++|+..+++|||||++|++++|+++++.++++
T Consensus 210 ~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~ 289 (343)
T cd04794 210 SLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLLYRLTGDL 289 (343)
T ss_pred ccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCccCCCccccCccchHHHHHHHHHHhCcH
Confidence 65432 34567999999999999999999999999999999999999999987667999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccC-CCCCCCCCCCccccchHHHHHHHHHhhCCCCCCCC
Q psy13779 635 EQMYRALCFANWVTGYNK-HEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKFP 687 (692)
Q Consensus 635 ~~l~~a~~~~~~l~~~~~-~~~~~p~~~~sL~~G~AGi~~~Ll~l~~p~~~~fp 687 (692)
+|+++|..+++.+.+... ...+.|+.++|||+|+|||+|+|+++.+|+++.||
T Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~G~aG~~~~ll~~~~p~~~~f~ 343 (343)
T cd04794 290 KYLYRACKFAEFLINYGFKNGARIPDRPFSLFEGLAGTACFLADLLQPRQAGFP 343 (343)
T ss_pred HHHHHHHHHHHHHhcchhhhccCCCCCCchhhccHHhHHHHHHHHcCcccccCC
Confidence 999999999998877542 23678899999999999999999999999999999
No 4
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=100.00 E-value=1.6e-40 Score=359.97 Aligned_cols=340 Identities=27% Similarity=0.437 Sum_probs=250.7
Q ss_pred CCCCccccccHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccC---CcccccCChHHHHHHHHHHHHhCChHHHHH
Q psy13779 236 DHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNR---RFSFLNGDAGPIAVSALIYKALGKQEKLES 312 (692)
Q Consensus 236 ~~~~sLY~G~aGIal~l~~L~~~t~~~~yl~~A~~~i~~~l~~~~~~---~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~ 312 (692)
|.+.+||+|.+||++||.++++.+++++|.+.++++++.+...++.. .+|+++|.+|+++++..+++..++.+..++
T Consensus 2 ~~~~sly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~G~~Gi~~~l~~~~~~~~~~~~~~~ 81 (355)
T PF05147_consen 2 PLDYSLYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFSGLAGIAYALSYLSKRLGDEKYIEE 81 (355)
T ss_dssp CCGGSTTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTTSCHHHHHHHHHHCCCTCHHHHHHH
T ss_pred CCCCcCCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccCChHHHHHHHHHHHHhccchHHHHH
Confidence 78999999999999999999999999999999999999987777633 899999999999999999988777766666
Q ss_pred HHHHHHhhhhhhhcCCCCCCcccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcc
Q psy13779 313 SVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWH 392 (692)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~ 392 (692)
.++++.+.+......+...+.|+++|.+|++++++.+++.++++.+. +.+.++++.|++...... ....+.+..|.
T Consensus 82 ~l~~~~~~i~~~~~~~~~~~~D~l~G~aGi~~~ll~~~~~~~~~~~l-~~i~~~~~~l~~~~~~~~---~~~~~~~~~~~ 157 (355)
T PF05147_consen 82 LLKRILNIIENSISNDSNNDYDLLSGLAGIGLYLLSLYEKTKDPKYL-DIIEKILEKLLESIINDD---PSENQIGSEWK 157 (355)
T ss_dssp HHHHHHHCHHHHHHCT--GGCSTTTSHHHHHHHHCCHHHHHCCHHS--HHHHHHHHHCCCHHCCCH---TCCGSSSHHCH
T ss_pred HHHHHHHHHHHhhhhcccccchhhcccHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHhhcc---cccCCCccccC
Confidence 66666655543322222222899999999999999999888777666 566777777766543211 00111111120
Q ss_pred cccccCCccchhHHHHHHHhhcccCchhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHh
Q psy13779 393 DKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYE 472 (692)
Q Consensus 393 ~~~~lG~ahG~aGIl~~Ll~l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~ 472 (692)
T Consensus 158 -------------------------------------------------------------------------------- 157 (355)
T PF05147_consen 158 -------------------------------------------------------------------------------- 157 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCcHHHHHHHHhccCCCcccccCcccccccCCCccCcccchhHHHHHHHHcc-cCCh-HHHHHHHHHHHHHHHHhcCC-
Q psy13779 473 TYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSN-VLTD-KERDTLVKPTLDALLDETFP- 549 (692)
Q Consensus 473 ~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~-~~~~-~~~~~~i~~~l~~l~~~~~~- 549 (692)
....++|++||.+||+++|++++ +.+. +++.+.|+++++++.+...+
T Consensus 158 ------------------------------~~~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 207 (355)
T PF05147_consen 158 ------------------------------EGFINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTD 207 (355)
T ss_dssp ------------------------------TTBEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TG
T ss_pred ------------------------------CCCccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcc
Confidence 13345677777777777777776 3554 46888999999999998754
Q ss_pred CCCCCCCCCCCCCc-cccccCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHcCCCCCCCccccchHHHHHHHHHHH
Q psy13779 550 SGNLKSSHGSDSDR-LVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAY 628 (692)
Q Consensus 550 ~g~w~~~~~~~~~~-~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~g~~~~~~gLChG~aGi~~~ll~l~ 628 (692)
+++||+....+... .++||||++||+.+++.+.+.++++++.+.+.++.+.+++++....+++||||.+|++++|+.++
T Consensus 208 ~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~l~~~~ 287 (355)
T PF05147_consen 208 DGGWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQALESILQKGLFLNNPSLCHGTAGILEILLDLY 287 (355)
T ss_dssp CCT--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-TCTTSS-STTSHHHHHHHHHHHH
T ss_pred cCCCCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccccCCCCceeCchHHhHHHHHHHH
Confidence 57799865433111 68999999999999999999999999999999999888887744589999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccCCC-----CCCCCCCCccccchHHHHHHHHHhhCCCCCCCCCc
Q psy13779 629 HTTHAEEQMYRALCFANWVTGYNKHE-----DTTPDRPYSLYEGKVGVAFFLLDILKPTNAKFPGY 689 (692)
Q Consensus 629 ~~t~d~~~l~~a~~~~~~l~~~~~~~-----~~~p~~~~sL~~G~AGi~~~Ll~l~~p~~~~fp~~ 689 (692)
+.+++++|.+++.++.+.+++..... ...+..++|||+|.|||+++|+++.+|++++||-+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~Gi~~~ll~~~~~~~~~~~~~ 353 (355)
T PF05147_consen 288 KYTGDEEYKELANKLIQKLLSYYDENGYFPGEPRYRISFGLMTGIAGILYALLRLLNPDKPNWPSI 353 (355)
T ss_dssp HHH--HCCHHHHHHHHHHHCTTCCC---HHHTS-STTTTSTTTSHHHHHHHHHHHCSGGGS--TTT
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCccccHHHHHHHHHHhcCCCCCCCCcc
Confidence 99999999999999887776654331 22235689999999999999999999999999854
No 5
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=100.00 E-value=1.8e-36 Score=326.04 Aligned_cols=325 Identities=33% Similarity=0.477 Sum_probs=249.8
Q ss_pred ccccHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhcc---CCcccccCChHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy13779 242 YVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN---RRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLK 318 (692)
Q Consensus 242 Y~G~aGIal~l~~L~~~t~~~~yl~~A~~~i~~~l~~~~~---~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l~~~~ 318 (692)
|+|.+||++||.++++.+++++|.+.+.+.++.+...++. ...|+++|.+|+++++..+++..++++..+...+.+.
T Consensus 1 y~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~ 80 (343)
T cd04434 1 YHGAAGIALLLLELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSGLAGIAYALAALSKGLGDQELLKELLELLL 80 (343)
T ss_pred CCChHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHhCCCCCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7899999999999999999999999999999988776653 3789999999999999999999888876554444444
Q ss_pred hhhhhhhcCCCCCCcccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcccccccC
Q psy13779 319 ALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYG 398 (692)
Q Consensus 319 ~~~~~~~~~~~~~~~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~~~lG 398 (692)
.+.+.+.......+.|+++|.+|++++|+.+++.++++.+. +.+.++++.+++..+... ..
T Consensus 81 ~~~~~~~~~~~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~---~~--------------- 141 (343)
T cd04434 81 LLVELILEDLKDLNYDLLSGLAGLLLALLLLYKTFGEEIFL-ELIRKILDYLLELGKNGD---GK--------------- 141 (343)
T ss_pred HhhhhhhcccCCCCcceeechHHHHHHHHHHHHhcCCcCHH-HHHHHHHHHHHHhhhhcc---CC---------------
Confidence 44433221124567899999999999999999988777665 566677777666432100 00
Q ss_pred CccchhHHHHHHHhhcccCchhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHhhcCcHH
Q psy13779 399 AAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKK 478 (692)
Q Consensus 399 ~ahG~aGIl~~Ll~l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~~~~~ 478 (692)
T Consensus 142 -------------------------------------------------------------------------------- 141 (343)
T cd04434 142 -------------------------------------------------------------------------------- 141 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccCCCcccccCcccccccCCCccCcccchhHHHHHHHHcccCChH-HHHHHHHHHHHHHHHhcCC-CCCCCCC
Q psy13779 479 YLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDK-ERDTLVKPTLDALLDETFP-SGNLKSS 556 (692)
Q Consensus 479 ~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~~~-~~~~~i~~~l~~l~~~~~~-~g~w~~~ 556 (692)
..|+. .......+.|||||.+||+++|+++++.+++ .+.+.+++++.++.+.... .++|+..
T Consensus 142 ------------~~~~~----~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (343)
T cd04434 142 ------------IRWPM----YFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPS 205 (343)
T ss_pred ------------Cceee----eccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCCCCCCCCCC
Confidence 00000 0012345679999999999999999887654 5777888888888776544 3556532
Q ss_pred C-CCCCCccccccCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHcCCC-CCCCccccchHHHHHHHHHHHHhcCCH
Q psy13779 557 H-GSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLL-RKGYSLCHGVSGNAYAFLTAYHTTHAE 634 (692)
Q Consensus 557 ~-~~~~~~~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~g~~-~~~~gLChG~aGi~~~ll~l~~~t~d~ 634 (692)
. .......++||||++||+.+++.+++.++++++.+.+.+..+.+++.... ..++++|||.+|++++|+++++.++++
T Consensus 206 ~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~ll~l~~~~~~~ 285 (343)
T cd04434 206 RSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGNLLILLLLYKLTGDL 285 (343)
T ss_pred CCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhccCCCCCcCcCccchHHHHHHHHHHhCCH
Confidence 1 12234578999999999999999999999999999999988888877653 479999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCC-CC---CCCCCCCccccchHHHHHHHHHhhCC
Q psy13779 635 EQMYRALCFANWVTGYNKH-ED---TTPDRPYSLYEGKVGVAFFLLDILKP 681 (692)
Q Consensus 635 ~~l~~a~~~~~~l~~~~~~-~~---~~p~~~~sL~~G~AGi~~~Ll~l~~p 681 (692)
++.+++..++..+...... .. .....++|||+|+|||+++|+++.+|
T Consensus 286 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~ll~~~~~ 336 (343)
T cd04434 286 KFLARALALALLLISHANGWLCGGDSTGDRSPGLMTGLAGIALALLRLLNP 336 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCcCCCCCCchHHhhHHHHHHHHHHHhCC
Confidence 9999999887776543221 11 12356899999999999999999998
No 6
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=100.00 E-value=3.1e-35 Score=321.98 Aligned_cols=335 Identities=19% Similarity=0.209 Sum_probs=221.0
Q ss_pred ccccHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccCCcccccCChHHHHHHHHHHHHhCChHHHHHHHHHHHhhh
Q psy13779 242 YVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALA 321 (692)
Q Consensus 242 Y~G~aGIal~l~~L~~~t~~~~yl~~A~~~i~~~l~~~~~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 321 (692)
|+|.+||++||.+|+++|++++|.+.|+++++++.+.+++.
T Consensus 1 y~G~~GIalf~~~l~~~~~~~~~~~~a~~~l~~~~~~l~~~--------------------------------------- 41 (382)
T cd04793 1 SHGAPGIALLLSELAKHTKDEGYWERVHQYLSKALNYLLSL--------------------------------------- 41 (382)
T ss_pred CCcHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHhC---------------------------------------
Confidence 78999999999999999999999999999998877655421
Q ss_pred hhhhcCCCCCCcccccCchHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcccccccCCc
Q psy13779 322 PHLVDLRSDIPDEILYGRAGYLYSLLFVNK-HIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAA 400 (692)
Q Consensus 322 ~~~~~~~~~~~~dll~G~AG~l~~L~~l~~-~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~~~lG~a 400 (692)
. .+.++++|.+|+++++..+.+ ...++.+. +.++++...+++......+.+ ++ ......++.
T Consensus 42 -------~-~~~s~f~G~~Gi~~al~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~----~~----~~~~~yD~i 104 (382)
T cd04793 42 -------G-YSSSLFSGAAGVAFALLILSDNGKRYQELL-ESLDELIKAIVRRRLEDAKSG----EP----PTPTNYDVI 104 (382)
T ss_pred -------C-CCCcccccHHHHHHHHHHHccCcHhHHHHH-HHHHHHHHHHHHHHHHHHhcC----CC----CCCCCCcee
Confidence 0 123444555555555554443 11121111 112222222222111000000 00 011346899
Q ss_pred cchhHHHHHHHhhcccCchhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHhhcCcHHHH
Q psy13779 401 HGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYL 480 (692)
Q Consensus 401 hG~aGIl~~Ll~l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~~~~~~l 480 (692)
||.+||+.+|+.+++. ..+....+.+.++.+.+.... +++.
T Consensus 105 ~G~aGi~~~Ll~~~~~-~~~~~~~~~~~~~~l~~~~~~--~~~~------------------------------------ 145 (382)
T cd04793 105 SGLSGIGRYLLLRHEP-DSELLREILDYLVYLTEPLNQ--DITL------------------------------------ 145 (382)
T ss_pred echHHHHHHHHhccCc-chhHHHHHHHHHHHHHHHHhc--CCCC------------------------------------
Confidence 9999999999988721 111222344444444332100 0000
Q ss_pred HHHHhccCCCcccccCcc------cccccCCCccCcccchhHHHHHHHHcccCC--hHHHHHHHHHHHHHHHHhcCC--C
Q psy13779 481 DALLKSSDNFVSWSFGEC------EYEWHDKNYYGAAHGVTGILFTLLKSNVLT--DKERDTLVKPTLDALLDETFP--S 550 (692)
Q Consensus 481 ~~~~~~~~~~~~w~~~~~------~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~--~~~~~~~i~~~l~~l~~~~~~--~ 550 (692)
.|+..+. ........++|||||++||+++|++++... .+.+.+.++++++++.+.... .
T Consensus 146 -----------~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 214 (382)
T cd04793 146 -----------YIWSENQPSETESKEFPEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRK 214 (382)
T ss_pred -----------ccCcCcCCCccccccCCCccccccchhcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCC
Confidence 1111000 001123457899999999999999998755 357889999999999887654 3
Q ss_pred CCCCCCC-C----------CCCCccccccCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHcCCC---CCCCccccc
Q psy13779 551 GNLKSSH-G----------SDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLL---RKGYSLCHG 616 (692)
Q Consensus 551 g~w~~~~-~----------~~~~~~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~g~~---~~~~gLChG 616 (692)
++|+... . .......+||||++||+++++.+++.++|+++.+.+.++.+.+++.... ..+++||||
T Consensus 215 ~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lChG 294 (382)
T cd04793 215 GPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQLSKLISPTLCHG 294 (382)
T ss_pred CCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhhccCCCCCcCcc
Confidence 4665432 1 1122467999999999999999999999999999999988877654321 268999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCC--C-----------CCCCCCCccccchHHHHHHHHHhhCCC
Q psy13779 617 VSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHE--D-----------TTPDRPYSLYEGKVGVAFFLLDILKPT 682 (692)
Q Consensus 617 ~aGi~~~ll~l~~~t~d~~~l~~a~~~~~~l~~~~~~~--~-----------~~p~~~~sL~~G~AGi~~~Ll~l~~p~ 682 (692)
.+|++++|+++++.++++++++++.++.+.+++..... . .....++|||+|.|||+++|+++.+|+
T Consensus 295 ~~G~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~l~LL~~~~~~ 373 (382)
T cd04793 295 LAGLLFIFYLLYKDTNTNEFKSALEYLLNQIISSYSEEEPFGFKDIEETTGSIEWLDDSGLLEGAAGIALTLLSYYNGE 373 (382)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcccccccccchhhhcccccccCCceeecCHHHHHHHHHHhhhCC
Confidence 99999999999999999999999998877776543211 1 112468999999999999999999988
No 7
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=100.00 E-value=1.9e-34 Score=345.29 Aligned_cols=325 Identities=22% Similarity=0.257 Sum_probs=251.8
Q ss_pred CCCCCccccccHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhcc-----CCcccccCChHHHHHHHHHHHHhCChHH
Q psy13779 235 RDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN-----RRFSFLNGDAGPIAVSALIYKALGKQEK 309 (692)
Q Consensus 235 ~~~~~sLY~G~aGIal~l~~L~~~t~~~~yl~~A~~~i~~~l~~~~~-----~~~s~~~G~aGi~~~~~~l~~~~~~~~~ 309 (692)
+|.+.+||+|.+||++||.+|++.|++++|.+.|.++++.+...++. .+.++++|.+|+++++..+++.+++++.
T Consensus 483 ~~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~aGi~~~L~~l~~~~~~~~~ 562 (825)
T cd04792 483 SPLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGLGGILYALTHLGKLLKDDRL 562 (825)
T ss_pred ecCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEechhHHHHHHHHHHHHcCCHHH
Confidence 58999999999999999999999999999999999999988776652 4789999999999999999999888774
Q ss_pred HHHHHHHHHhhhhhhhcCCCCCCcccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcch
Q psy13779 310 LESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEY 389 (692)
Q Consensus 310 ~~~~l~~~~~~~~~~~~~~~~~~~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~ 389 (692)
.+ .+.++.+...... .+....|+++|.||++++|+.+++.++++.+. +.+.++++.+++..... .
T Consensus 563 ~~-~a~~~~~~l~~~~--~~~~~~D~~~G~aGii~~Ll~l~~~~~~~~~l-~~a~~~~~~l~~~~~~~----~------- 627 (825)
T cd04792 563 LN-LAKEILDLIDELI--EKDEKLDFISGAAGLILVLLSLYELFLSERFL-DLALKCGDHLLENASNE----D------- 627 (825)
T ss_pred HH-HHHHHHHHHHHhh--ccccCCCEeeecHHHHHHHHHHHhccCChHHH-HHHHHHHHHHHHhhhhc----c-------
Confidence 33 3333322221111 23456799999999999999999998877665 45555555555432100 0
Q ss_pred hcccccccCCccchhHHHHHHHhhcccCchhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHH
Q psy13779 390 EWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQV 469 (692)
Q Consensus 390 ~w~~~~~lG~ahG~aGIl~~Ll~l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ 469 (692)
..
T Consensus 628 ------~~------------------------------------------------------------------------ 629 (825)
T cd04792 628 ------GG------------------------------------------------------------------------ 629 (825)
T ss_pred ------CC------------------------------------------------------------------------
Confidence 00
Q ss_pred HHhhcCcHHHHHHHHhccCCCcccccCcccccccCCCccCcccchhHHHHHHHHcccCChH-HHHHHHHHHHHHHHHhcC
Q psy13779 470 AYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDK-ERDTLVKPTLDALLDETF 548 (692)
Q Consensus 470 ly~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~~~-~~~~~i~~~l~~l~~~~~ 548 (692)
.| ........|||||.+||+++|+.+++.+++ ++.+.++++++++.+...
T Consensus 630 ----------------------~~-------~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~ 680 (825)
T cd04792 630 ----------------------IG-------PAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFS 680 (825)
T ss_pred ----------------------cc-------cccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcC
Confidence 00 001234569999999999999999887775 688999999998877654
Q ss_pred C-CCCCCCCCCCCCCccccccCCchHHHHHHHHHHHh--cCCHHHHHHHHHHhHHHHHcCCCCCCCccccchHHHHHHHH
Q psy13779 549 P-SGNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYET--YNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFL 625 (692)
Q Consensus 549 ~-~g~w~~~~~~~~~~~~~wCHG~~Gi~~~l~~~~~~--~~d~~~~~~a~~~~~~i~~~g~~~~~~gLChG~aGi~~~ll 625 (692)
+ .++||.. .......+||||++||+++++.+.+. .+++.+.+.+.++.+.+++.+. ..+++||||.+|++.+|+
T Consensus 681 ~~~~~w~~~--~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~~-~~~~slCHG~~Gil~~ll 757 (825)
T cd04792 681 EEGWNWPRK--DGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKEGF-GNNHSLCHGDLGNLEILL 757 (825)
T ss_pred HhhcCCCCc--CcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhcC-CCCCeecCCCcchHHHHH
Confidence 4 4789832 22335679999999999999999999 7888999999998888887775 478999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhcc---CCCCCCC--CCCCccccchHHHHHHHHHhhCCCCC
Q psy13779 626 TAYHTTHAEEQMYRALCFANWVTGYN---KHEDTTP--DRPYSLYEGKVGVAFFLLDILKPTNA 684 (692)
Q Consensus 626 ~l~~~t~d~~~l~~a~~~~~~l~~~~---~~~~~~p--~~~~sL~~G~AGi~~~Ll~l~~p~~~ 684 (692)
.+++.++++++.+.+.+.+..+.... .+....| ..++|||+|+|||+++|+|+.+|+..
T Consensus 758 ~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~g~~~~~~~~glm~G~aGIgy~LLrl~~p~~v 821 (825)
T cd04792 758 YAAKAFGDEKLQELANSLAIKVLSQGKKNGWLCGLPRGFESPGLMTGLAGIGYGLLRLAAPDRV 821 (825)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhcCccCCCCCCCCCchhhhhHHHHHHHHHhhhCCCCC
Confidence 99999999999999998877665432 2334444 36899999999999999999998643
No 8
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=100.00 E-value=6.3e-34 Score=316.28 Aligned_cols=311 Identities=22% Similarity=0.325 Sum_probs=246.0
Q ss_pred CCCCCccccccHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccCCcccccCChHHHHHHHHHHHHhCChHHHHHHH
Q psy13779 235 RDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSV 314 (692)
Q Consensus 235 ~~~~~sLY~G~aGIal~l~~L~~~t~~~~yl~~A~~~i~~~l~~~~~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l 314 (692)
+|.+.+||+|.+||||||++|+++|++..|.+.|.++++.+.+.++.
T Consensus 639 sp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~~L~~~~~sv~~--------------------------------- 685 (963)
T COG4403 639 SPLGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIKALQDSRKSVNN--------------------------------- 685 (963)
T ss_pred ecCCchhhcCcchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhhh---------------------------------
Confidence 58999999999999999999999999999999999999877665431
Q ss_pred HHHHhhhhhhhcCCCCCCcccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcccc
Q psy13779 315 QKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDK 394 (692)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~ 394 (692)
++.+ .+.+.+.|.+|++|+|..++..+.|.... ..+.+.+...
T Consensus 686 -----------~~~~-~~iga~~G~~g~~yal~~I~~~~~~~~l~----~~~~~~i~~l--------------------- 728 (963)
T COG4403 686 -----------NLNP-INIGAFTGLSGYFYALWKIYSVTRDNYLI----QSAENSIRHL--------------------- 728 (963)
T ss_pred -----------ccCC-cccccccccchhhhhhHHHHHhcccHHHH----HHHHHHHHHH---------------------
Confidence 0112 56788899999999999999888765322 1211111100
Q ss_pred cccCCccchhHHHHHHHhhcccCchhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHhhc
Q psy13779 395 NYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETY 474 (692)
Q Consensus 395 ~~lG~ahG~aGIl~~Ll~l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~ 474 (692)
..+ ...+..+|+++|++|++.+|+++|+.+
T Consensus 729 -----------------------------------e~~---------------v~~~~~~d~i~Gl~g~i~~L~~iYk~~ 758 (963)
T COG4403 729 -----------------------------------EIL---------------VQKSKDPDFINGLAGVICVLVSIYKLT 758 (963)
T ss_pred -----------------------------------HHH---------------HhhccCcchhhccHHHHHHHHHHHhhc
Confidence 000 011334789999999999999999999
Q ss_pred CcHHHHHHHHhccCCCcccccCcccccccCCCccCcccchhHHHHHHHHcccCChH-HHHHHHHHHHHHHHHhcCCCCCC
Q psy13779 475 NDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDK-ERDTLVKPTLDALLDETFPSGNL 553 (692)
Q Consensus 475 ~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~~~-~~~~~i~~~l~~l~~~~~~~g~w 553 (692)
+++++++.+....+....-... ...+. ...+||+||++||+++|+++++.|++ .+.+.|++++.++.....
T Consensus 759 ~epk~l~~ais~~~~l~~~~v~--~d~s~-~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~~~~Er~~f~----- 830 (963)
T COG4403 759 DEPKFLELAISLGRILMEKIVG--NDSSE-TVLLGFSHGASGIILTLLKLYEATGEESLLKKIKELLSYERMKFS----- 830 (963)
T ss_pred cchHHHHHHHHHHHHHHHHhhc--ccccc-ceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH-----
Confidence 9999999887765432110000 00122 67899999999999999999999996 699999999999988642
Q ss_pred CCCCCCCCCccccccCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHcCCCCCCCccccchHHHHHHHHHHHHhcCC
Q psy13779 554 KSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHA 633 (692)
Q Consensus 554 ~~~~~~~~~~~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~g~~~~~~gLChG~aGi~~~ll~l~~~t~d 633 (692)
+...-||||.+|++..++...+.+.|+.+.+.++.+...+++.|+. +.++|||..|++.+|+.+++.++|
T Consensus 831 --------~~~~~Wc~g~~gilv~rl~l~~~~~de~i~~Ei~~~l~~~i~~glg--n~~~Chgdfg~ie~l~~~a~~l~~ 900 (963)
T COG4403 831 --------DKFTRWCSGAPGILVSRLLLKKIYDDESIDREIQQALKTIINNGLG--NDSLCHGDFGIIEVLLHYAKILSD 900 (963)
T ss_pred --------HHHHHHhcCCcceeechhhhhhhcchHHHHHHHHHHHHHHHhccCC--CccccccchHHHHHHHHHHHHhCC
Confidence 1245899999999999999999999999999999999999999993 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccC-----CCCCCCCCCCccccchHHHHHHHHHhhCCCC
Q psy13779 634 EEQMYRALCFANWVTGYNK-----HEDTTPDRPYSLYEGKVGVAFFLLDILKPTN 683 (692)
Q Consensus 634 ~~~l~~a~~~~~~l~~~~~-----~~~~~p~~~~sL~~G~AGi~~~Ll~l~~p~~ 683 (692)
++.++.|.+.+.-+.+... +....++.++|||+|++||||.|+|+..|..
T Consensus 901 ~~l~es~~~~~~~~~~k~~~~g~~~~~~~~~~~~glm~GvtGigY~lLR~~~p~~ 955 (963)
T COG4403 901 SELLESANKLANELVSKAITYGINQGLNHANESFGLMNGVTGIGYSLLRISSPKF 955 (963)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCCCccchhHHHhhhHHHHHHHHHHhCccc
Confidence 9999999987766655432 2334557799999999999999999999954
No 9
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=100.00 E-value=1.2e-32 Score=294.50 Aligned_cols=311 Identities=18% Similarity=0.184 Sum_probs=227.1
Q ss_pred ccccHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhc-cCCcccccCChHHHHHHHHHHHHhCChHHHHHHHHHHHhh
Q psy13779 242 YVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLK-NRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKAL 320 (692)
Q Consensus 242 Y~G~aGIal~l~~L~~~t~~~~yl~~A~~~i~~~l~~~~-~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l~~~~~~ 320 (692)
|+|.+||++++.+++. ..+.+.+.+.|+.+..... ...+++++|.+|+++++..+. +.+..++.++.+.+.
T Consensus 1 ~~G~aGi~~~l~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~gl~~G~~Gi~~~l~~~~----~~~~~~~~~~~~~~~ 72 (321)
T cd04791 1 AHGAAGVLMALLRSGF----GDYAENALDWIEEAATRELSGSPPGLYDGRAGIAWVLIELG----HPARAKALFDTLLDE 72 (321)
T ss_pred CchHHHHHHHHHHhcC----CCCCchHHHHHHHHhhccCCCCCCccccChhhHHHHHHHcC----CHHHHHHHHHHHhcc
Confidence 7899999999999981 1133445566655544322 247899999999999877643 333333333222211
Q ss_pred hhhhhcCCCCCCcccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcccccccCCc
Q psy13779 321 APHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAA 400 (692)
Q Consensus 321 ~~~~~~~~~~~~~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~~~lG~a 400 (692)
..+..+.|+++|.+|++++++.+++. +++.+. +.++++++.+.+.... .... +
T Consensus 73 ------~~~~~~~dl~~G~aG~~~~ll~l~~~-~~~~~l-~~a~~~~~~l~~~~~~----~~~~-~-------------- 125 (321)
T cd04791 73 ------PSANLNIDLASGLAGIGLALLYFART-GDPALL-EAAAKIAELLAEALER----GDPA-L-------------- 125 (321)
T ss_pred ------cccccCCccccchHHHHHHHHHHHhc-CChHHH-HHHHHHHHHHHHHhhc----cccc-c--------------
Confidence 12335779999999999999999999 888877 5667777777654211 0000 0
Q ss_pred cchhHHHHHHHhhcccCchhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHhhcCcHHHH
Q psy13779 401 HGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYL 480 (692)
Q Consensus 401 hG~aGIl~~Ll~l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~~~~~~l 480 (692)
T Consensus 126 -------------------------------------------------------------------------------- 125 (321)
T cd04791 126 -------------------------------------------------------------------------------- 125 (321)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhccCCCcccccCcccccccCCCccCcccchhHHHHHHHHcccCChH-HHHHHHHHHHHHHHHhcCC-CCCCCCCCC
Q psy13779 481 DALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDK-ERDTLVKPTLDALLDETFP-SGNLKSSHG 558 (692)
Q Consensus 481 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~~~-~~~~~i~~~l~~l~~~~~~-~g~w~~~~~ 558 (692)
.|. .......||+||.|||+++|+++++.+++ ++.+.++++++++.+...+ +++|....
T Consensus 126 -----------~~~-------~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~- 186 (321)
T cd04791 126 -----------LWP-------DFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVD- 186 (321)
T ss_pred -----------ccc-------cCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceEcC-
Confidence 000 01123457888888888888888777765 6888889999998887544 35554322
Q ss_pred CCCCccccccCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHcCCCCCCCccccchHHHHHHHHHHHHhcCCHHHHH
Q psy13779 559 SDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMY 638 (692)
Q Consensus 559 ~~~~~~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~g~~~~~~gLChG~aGi~~~ll~l~~~t~d~~~l~ 638 (692)
+..+..++||||++|++++++++++.++|+++.+.++++.+.+++.+. .++++|||.+|++.+|+.+++.++|++|.+
T Consensus 187 ~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~--~~~~lchG~~G~~~~l~~~~~~~~~~~~~~ 264 (321)
T cd04791 187 EGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSCY--ANPGLFSGTAGLGAHLNDLAAEGDNALYKA 264 (321)
T ss_pred CCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc--cCccccCCcHhHHHHHHhhcccccChHHHH
Confidence 222356799999999999999999999999999999999988776653 789999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCC--CCC-----CCCCccccchHHHHHHHHHhhCCCCCCCCC
Q psy13779 639 RALCFANWVTGYNKHED--TTP-----DRPYSLYEGKVGVAFFLLDILKPTNAKFPG 688 (692)
Q Consensus 639 ~a~~~~~~l~~~~~~~~--~~p-----~~~~sL~~G~AGi~~~Ll~l~~p~~~~fp~ 688 (692)
.+.++++++++...... .+| ..++|||+|.|||+++|+++.+++...||.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~ll~l~~~~~~~~p~ 321 (321)
T cd04791 265 AAERLALYLIATADEIEGPVFPGDQGLRISTDLATGTAGILLFLLRLLTRARSWLPF 321 (321)
T ss_pred HHHHHHHHhccccCCccccccCCccceeeccccccchHHHHHHHHHHhcCCcccCCC
Confidence 99999998876543211 122 247899999999999999999998888985
No 10
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=99.95 E-value=5.3e-28 Score=260.97 Aligned_cols=124 Identities=49% Similarity=0.971 Sum_probs=117.7
Q ss_pred CccccccCchhHHHHHHHHHHHcCCHHHHHHHHHhhHHHHHhcccccCCcccccccchHHHHHHHHhhcCchhHHHHHHH
Q psy13779 2 RLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNAYAFLTAYHTTHAEEQMYRALC 81 (692)
Q Consensus 2 ~l~~wchgapg~~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~g~l~kg~~lchG~ag~~~~~l~~~~~t~~~~~l~ra~~ 81 (692)
.+++||||+||++.++..|++++++++|.+.+.++++.+|++|++.|++|||||++||+|+||++|+.|++++|++||.+
T Consensus 218 ~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~ 297 (343)
T cd04794 218 RLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACK 297 (343)
T ss_pred ccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCccCCCccccCccchHHHHHHHHHHhCcHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC-CCCCCCCCCCCccccchHHHHHHHHhhcCCCcccc
Q psy13779 82 FANWVTGYN-KHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKW 125 (692)
Q Consensus 82 ~a~~~~~~~-~~~~~~~~~p~sl~eG~~G~~~~l~~~~~~~~~~~ 125 (692)
+++++.... ...+++||+|||||+|+||++|+|+++++|++++|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~l~~G~aG~~~~ll~~~~p~~~~f 342 (343)
T cd04794 298 FAEFLINYGFKNGARIPDRPFSLFEGLAGTACFLADLLQPRQAGF 342 (343)
T ss_pred HHHHHhcchhhhccCCCCCCchhhccHHhHHHHHHHHcCcccccC
Confidence 999998764 34478999999999999999999999999999954
No 11
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=99.94 E-value=9.6e-25 Score=234.83 Aligned_cols=278 Identities=22% Similarity=0.255 Sum_probs=190.1
Q ss_pred CCCccccccHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhh----ccCCcccccCChHHHHHHHHHHHHhCChHHHHH
Q psy13779 237 HDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNL----KNRRFSFLNGDAGPIAVSALIYKALGKQEKLES 312 (692)
Q Consensus 237 ~~~sLY~G~aGIal~l~~L~~~t~~~~yl~~A~~~i~~~l~~~----~~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~ 312 (692)
.+.|+|+|.+|+++++.++++.++++++++.+.++++.+.+.. +....++++|.+|++.++..+++.++++...+
T Consensus 44 ~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~~~- 122 (343)
T cd04434 44 TDISLFSGLAGIAYALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGLAGLLLALLLLYKTFGEEIFLE- 122 (343)
T ss_pred CCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeechHHHHHHHHHHHHhcCCcCHHH-
Confidence 5779999999999999999999999999999999998877664 34588999999999999999999886655332
Q ss_pred HHHHHHhhhhhhhcCCCCCCcccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcc
Q psy13779 313 SVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWH 392 (692)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~ 392 (692)
.+.+ +.+.+.+ ...+......+... ...
T Consensus 123 ~~~~---~~~~l~~------------------------------------------~~~~~~~~~~~~~~-------~~~ 150 (343)
T cd04434 123 LIRK---ILDYLLE------------------------------------------LGKNGDGKIRWPMY-------FPE 150 (343)
T ss_pred HHHH---HHHHHHH------------------------------------------hhhhccCCCceeee-------ccC
Confidence 2222 2211110 00000000000000 001
Q ss_pred cccccCCccchhHHHHHHHhhcccCchh-HhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHH
Q psy13779 393 DKNYYGAAHGVTGILFTLLKSNVLTDKE-RDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAY 471 (692)
Q Consensus 393 ~~~~lG~ahG~aGIl~~Ll~l~~~~~~~-~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly 471 (692)
+..+.|++||.+||+++|+.+++.++++ ..+.++.....+.+...+.
T Consensus 151 ~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 198 (343)
T cd04434 151 GRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDDS-------------------------------- 198 (343)
T ss_pred CccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCCC--------------------------------
Confidence 2246899999999999999998877444 3333333333332211110
Q ss_pred hhcCcHHHHHHHHhccCCCcccccCcccccccCCCccCcccchhHHHHHHHHcccCChH-HHHHHHHHHHHHHHHhcCCC
Q psy13779 472 ETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDK-ERDTLVKPTLDALLDETFPS 550 (692)
Q Consensus 472 ~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~~~-~~~~~i~~~l~~l~~~~~~~ 550 (692)
...|... ..........+||||.+||+++++++++.+++ ++.+.+++.++...+....+
T Consensus 199 ------------------~~~~~~~--~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (343)
T cd04434 199 ------------------GGFWWPS--RSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLE 258 (343)
T ss_pred ------------------CCCCCCC--CCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhcc
Confidence 0111100 00112345689999999999999999988774 67778888777776653210
Q ss_pred CCCCCCCCCCCCccccccCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHH------cC---CCCCCCccccchHHHH
Q psy13779 551 GNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWH------AG---LLRKGYSLCHGVSGNA 621 (692)
Q Consensus 551 g~w~~~~~~~~~~~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~------~g---~~~~~~gLChG~aGi~ 621 (692)
....+||||.+|++.+++.+++.++++++.+.+.+....+.. .. ....++|||+|.+|++
T Consensus 259 -----------~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~ 327 (343)
T cd04434 259 -----------LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALALLLISHANGWLCGGDSTGDRSPGLMTGLAGIA 327 (343)
T ss_pred -----------CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhcccCcCCCCCCchHHhhHHHHH
Confidence 235699999999999999999999999999888877653332 11 1146899999999999
Q ss_pred HHHHHHHHh
Q psy13779 622 YAFLTAYHT 630 (692)
Q Consensus 622 ~~ll~l~~~ 630 (692)
++|+++.+.
T Consensus 328 ~~ll~~~~~ 336 (343)
T cd04434 328 LALLRLLNP 336 (343)
T ss_pred HHHHHHhCC
Confidence 999999765
No 12
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=99.92 E-value=8.5e-24 Score=253.56 Aligned_cols=264 Identities=19% Similarity=0.247 Sum_probs=188.2
Q ss_pred CCCccccccHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhc-cCCcccccCChHHHHHHHHHHHHhCChHHHHHHHH
Q psy13779 237 HDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLK-NRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQ 315 (692)
Q Consensus 237 ~~~sLY~G~aGIal~l~~L~~~t~~~~yl~~A~~~i~~~l~~~~-~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l~ 315 (692)
.+.|+|+|.+||++++.++++.++++.|++.|.+.++.+.+... ....++++|.||+++++..+++.+++++..+...+
T Consensus 535 ~~~gl~~G~aGi~~~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~ 614 (825)
T cd04792 535 TGIGAFSGLGGILYALTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGAAGLILVLLSLYELFLSERFLDLALK 614 (825)
T ss_pred cCceeEechhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeeecHHHHHHHHHHHhccCChHHHHHHHH
Confidence 57899999999999999999999999999999998887655443 44789999999999999999998887764443222
Q ss_pred HHHhhhhhhhcCC-------CCCCcccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcc
Q psy13779 316 KLKALAPHLVDLR-------SDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLE 388 (692)
Q Consensus 316 ~~~~~~~~~~~~~-------~~~~~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~ 388 (692)
-+..+.....+.+ .....++.+|.+|++++|..+++.++++.+. +.+.++++..... +..
T Consensus 615 ~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~-~~a~~~l~~~~~~---~~~--------- 681 (825)
T cd04792 615 CGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYL-KLAHKALKYERRL---FSE--------- 681 (825)
T ss_pred HHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHHHHcCcHHHH-HHHHHHHHHHHHh---cCH---------
Confidence 2222222111111 1235689999999999999999999887654 2222222211100 000
Q ss_pred hhcccccccCCccchhHHHHHHHhhcccCchhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHH
Q psy13779 389 YEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQ 468 (692)
Q Consensus 389 ~~w~~~~~lG~ahG~aGIl~~Ll~l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll 468 (692)
...
T Consensus 682 -------------------------------------------------~~~---------------------------- 684 (825)
T cd04792 682 -------------------------------------------------EGW---------------------------- 684 (825)
T ss_pred -------------------------------------------------hhc----------------------------
Confidence 000
Q ss_pred HHHhhcCcHHHHHHHHhccCCCcccccCcccccccCCCccCcccchhHHHHHHHHcccC--Ch-HHHHHHHHHHHHHHHH
Q psy13779 469 VAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVL--TD-KERDTLVKPTLDALLD 545 (692)
Q Consensus 469 ~ly~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~--~~-~~~~~~i~~~l~~l~~ 545 (692)
.|+. ........+||||++||+++++.+++. .+ +.+.+.++.+++.+.+
T Consensus 685 -----------------------~w~~-----~~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~ 736 (825)
T cd04792 685 -----------------------NWPR-----KDGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLK 736 (825)
T ss_pred -----------------------CCCC-----cCcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH
Confidence 1210 011234568999999999999999887 34 4688888888888776
Q ss_pred hcCCCCCCCCCCCCCCCccccccCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHHH--------HcCCC--CCCCcccc
Q psy13779 546 ETFPSGNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVW--------HAGLL--RKGYSLCH 615 (692)
Q Consensus 546 ~~~~~g~w~~~~~~~~~~~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~--------~~g~~--~~~~gLCh 615 (692)
..+ ....+||||.+|++.+++.+++.++|+++.+.+.+.++.+. ..|.. ..++|||+
T Consensus 737 ~~~-------------~~~~slCHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~g~~~~~~~~glm~ 803 (825)
T cd04792 737 EGF-------------GNNHSLCHGDLGNLEILLYAAKAFGDEKLQELANSLAIKVLSQGKKNGWLCGLPRGFESPGLMT 803 (825)
T ss_pred hcC-------------CCCCeecCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCccCCCCCCCCCchhhh
Confidence 431 12358999999999999999999999999988887765432 22222 26799999
Q ss_pred chHHHHHHHHHHHHhc
Q psy13779 616 GVSGNAYAFLTAYHTT 631 (692)
Q Consensus 616 G~aGi~~~ll~l~~~t 631 (692)
|.||+++.|++++.+.
T Consensus 804 G~aGIgy~LLrl~~p~ 819 (825)
T cd04792 804 GLAGIGYGLLRLAAPD 819 (825)
T ss_pred hHHHHHHHHHhhhCCC
Confidence 9999999999998754
No 13
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=99.91 E-value=2.3e-22 Score=220.35 Aligned_cols=299 Identities=15% Similarity=0.143 Sum_probs=184.4
Q ss_pred CCCccccccHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHhhccCCcccccCChHHHHHHHHHHHHhCChHHHHHHHH
Q psy13779 237 HDYSVYVGTSGQAMFYYIYYQ-RTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQ 315 (692)
Q Consensus 237 ~~~sLY~G~aGIal~l~~L~~-~t~~~~yl~~A~~~i~~~l~~~~~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l~ 315 (692)
.+.|+|+|.+|+++.+.++++ ...++++++.+.+.+..+.+.. ++
T Consensus 43 ~~~s~f~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------------------~~ 88 (382)
T cd04793 43 YSSSLFSGAAGVAFALLILSDNGKRYQELLESLDELIKAIVRRR----------------------------------LE 88 (382)
T ss_pred CCCcccccHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHH----------------------------------HH
Confidence 477999999999999999988 3345566666666655432210 00
Q ss_pred HHHhhhhhhhcCCCCCCcccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhh---h---h--hcCCCCc
Q psy13779 316 KLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLS---A---R--KKSRVPL 387 (692)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~---~---~--~~~~~pL 387 (692)
..+. .....+.+.|+++|.||++.+|+.+++ .+.... ..+.++++.+.+...... + . .....+.
T Consensus 89 ~~~~-----~~~~~~~~yD~i~G~aGi~~~Ll~~~~--~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T cd04793 89 DAKS-----GEPPTPTNYDVISGLSGIGRYLLLRHE--PDSELL-REILDYLVYLTEPLNQDITLYIWSENQPSETESKE 160 (382)
T ss_pred HHhc-----CCCCCCCCCceeechHHHHHHHHhccC--cchhHH-HHHHHHHHHHHHHHhcCCCCccCcCcCCCcccccc
Confidence 0000 001234567999999999999998861 111111 234555555544321100 0 0 0000000
Q ss_pred chhcccccccCCccchhHHHHHHHhhcccC-ch-hHhhhHHHHHHHHhhccCC--CCCCCCCCCCCCCcccccccCchhH
Q psy13779 388 EYEWHDKNYYGAAHGVTGILFTLLKSNVLT-DK-ERDTLVKPTLDALLHETFP--SGNLKSSHGSDSDRLVQWCHGSPGF 463 (692)
Q Consensus 388 ~~~w~~~~~lG~ahG~aGIl~~Ll~l~~~~-~~-~~~~~i~~~i~~l~~~~~~--~~n~~~~~~~~~~~~~d~~~G~aGi 463 (692)
+ ..+..++|++||++||+++|..+++.. .. ...+.+++.++++.+...+ .+||...+....
T Consensus 161 -~-~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~------------- 225 (382)
T cd04793 161 -F-PEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNR------------- 225 (382)
T ss_pred -C-CCccccccchhcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHH-------------
Confidence 0 012347899999999999999988765 33 3566777777666553221 223321100000
Q ss_pred HHHHHHHHhhcCcHHHHHHHHhccCCCcccccCcccccccCCCccCcccchhHHHHHHHHcccCChH-HHHHHHHHHHHH
Q psy13779 464 TSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDK-ERDTLVKPTLDA 542 (692)
Q Consensus 464 i~~Ll~ly~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~~~-~~~~~i~~~l~~ 542 (692)
. .+. ...........+||||.+||+++++.+++.+++ .+.+.+.++++.
T Consensus 226 --------------------~-------~~~---~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~ 275 (382)
T cd04793 226 --------------------E-------QIG---GRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKA 275 (382)
T ss_pred --------------------H-------Hhc---cccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 0 000 000112334679999999999999999886664 677777777776
Q ss_pred HHHhcCCCCCCCCCCCCCCCccccccCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHc----C---C---------
Q psy13779 543 LLDETFPSGNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHA----G---L--------- 606 (692)
Q Consensus 543 l~~~~~~~g~w~~~~~~~~~~~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~----g---~--------- 606 (692)
..+... ++| .-..++||||.+|++.+++.+++.++++++.+.+.+..+.+++. + +
T Consensus 276 ~~~~~~--~~~-------~~~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (382)
T cd04793 276 ALKDKK--QLS-------KLISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLNQIISSYSEEEPFGFKDIEETTGS 346 (382)
T ss_pred HHhChh--hhc-------cCCCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcccccccccchhhhccc
Confidence 654321 111 01356999999999999999999999999999888876544321 1 1
Q ss_pred --CCCCCccccchHHHHHHHHHHHHhc
Q psy13779 607 --LRKGYSLCHGVSGNAYAFLTAYHTT 631 (692)
Q Consensus 607 --~~~~~gLChG~aGi~~~ll~l~~~t 631 (692)
...++|||.|.+|++++|+++++..
T Consensus 347 ~~~~~~~gl~~G~aGI~l~LL~~~~~~ 373 (382)
T cd04793 347 IEWLDDSGLLEGAAGIALTLLSYYNGE 373 (382)
T ss_pred ccccCCceeecCHHHHHHHHHHhhhCC
Confidence 1367999999999999999998754
No 14
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=99.89 E-value=9.7e-22 Score=210.28 Aligned_cols=255 Identities=18% Similarity=0.142 Sum_probs=176.9
Q ss_pred CCCCccccccHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhc-cCCcccccCChHHHHHHHHHHHHhCChHHHHHHH
Q psy13779 236 DHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLK-NRRFSFLNGDAGPIAVSALIYKALGKQEKLESSV 314 (692)
Q Consensus 236 ~~~~sLY~G~aGIal~l~~L~~~t~~~~yl~~A~~~i~~~l~~~~-~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l 314 (692)
..+.++|+|.+||++++.++++. +.++++++.+.+... ..+.++++|.+|++.++..+++. ++++..+...
T Consensus 37 ~~~~gl~~G~~Gi~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~dl~~G~aG~~~~ll~l~~~-~~~~~l~~a~ 108 (321)
T cd04791 37 GSPPGLYDGRAGIAWVLIELGHP-------ARAKALFDTLLDEPSANLNIDLASGLAGIGLALLYFART-GDPALLEAAA 108 (321)
T ss_pred CCCCccccChhhHHHHHHHcCCH-------HHHHHHHHHHhcccccccCCccccchHHHHHHHHHHHhc-CChHHHHHHH
Confidence 35789999999999999987642 345555554443332 35789999999999999999998 8877554222
Q ss_pred HHHHhhhhhhhcC--------CCCCCcccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCC
Q psy13779 315 QKLKALAPHLVDL--------RSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVP 386 (692)
Q Consensus 315 ~~~~~~~~~~~~~--------~~~~~~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~p 386 (692)
+-...+.+...+. ......++.+|.||++++|..+++.++|+++. +.+++.++.+.+.... ++.
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l-~~A~~~~~~~~~~~~~---~~~---- 180 (321)
T cd04791 109 KIAELLAEALERGDPALLWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYL-ELAEEALDKELARAVV---DDG---- 180 (321)
T ss_pred HHHHHHHHHhhccccccccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHhhcc---CCC----
Confidence 2222222221111 11224588999999999999999999998776 3444544444332110 000
Q ss_pred cchhcccccccCCccchhHHHHHHHhhcccCchhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHH
Q psy13779 387 LEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSL 466 (692)
Q Consensus 387 L~~~w~~~~~lG~ahG~aGIl~~Ll~l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~ 466 (692)
+|
T Consensus 181 ------------------------------------------------------g~------------------------ 182 (321)
T cd04791 181 ------------------------------------------------------GL------------------------ 182 (321)
T ss_pred ------------------------------------------------------Cc------------------------
Confidence 00
Q ss_pred HHHHHhhcCcHHHHHHHHhccCCCcccccCcccccccCCCccCcccchhHHHHHHHHcccCChH-HHHHHHHHHHHHHHH
Q psy13779 467 LQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDK-ERDTLVKPTLDALLD 545 (692)
Q Consensus 467 Ll~ly~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~~~-~~~~~i~~~l~~l~~ 545 (692)
.|. .......++||||++||+++++++++++++ ++.+.++++++.+.+
T Consensus 183 -------------------------~~~------~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~ 231 (321)
T cd04791 183 -------------------------LQV------DEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALS 231 (321)
T ss_pred -------------------------eEc------CCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 000 001123458999999999999999887775 688888888888775
Q ss_pred hcCCCCCCCCCCCCCCCccccccCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHc----------CC--CCCCCcc
Q psy13779 546 ETFPSGNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHA----------GL--LRKGYSL 613 (692)
Q Consensus 546 ~~~~~g~w~~~~~~~~~~~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~----------g~--~~~~~gL 613 (692)
.. | ..++||||.+|++.++..+++.++|+++.+.+.++.+.+.+. +. .+.+++|
T Consensus 232 ~~-----~---------~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl 297 (321)
T cd04791 232 SC-----Y---------ANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIATADEIEGPVFPGDQGLRISTDL 297 (321)
T ss_pred hh-----c---------cCccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhccccCCccccccCCccceeecccc
Confidence 42 1 235999999999999999999999999999999887654421 11 1356899
Q ss_pred ccchHHHHHHHHHHHH
Q psy13779 614 CHGVSGNAYAFLTAYH 629 (692)
Q Consensus 614 ChG~aGi~~~ll~l~~ 629 (692)
|+|.||++++|+++.+
T Consensus 298 ~~G~aGi~~~ll~l~~ 313 (321)
T cd04791 298 ATGTAGILLFLLRLLT 313 (321)
T ss_pred ccchHHHHHHHHHHhc
Confidence 9999999999999875
No 15
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=99.88 E-value=9.1e-22 Score=213.16 Aligned_cols=285 Identities=22% Similarity=0.317 Sum_probs=174.0
Q ss_pred HHHHHHHHHhhccccCCCCCCCCccccccHHHHHHHHHHHhccCChHHH-HHHHHHHHHHHHhhcc-CC--cccccCChH
Q psy13779 217 LTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYL-DKAQKLIERSLKNLKN-RR--FSFLNGDAG 292 (692)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~sLY~G~aGIal~l~~L~~~t~~~~yl-~~A~~~i~~~l~~~~~-~~--~s~~~G~aG 292 (692)
..++++.+.+.+.... ..+.++|+|.+|+++++..+++.++++.+. +....+.+.+.+.... .. .++++|.+|
T Consensus 34 ~~~~l~~~~~~~~~~~---~~~~gl~~G~~Gi~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~D~l~G~aG 110 (355)
T PF05147_consen 34 AEKLLEKLINYIENNP---YDSIGLFSGLAGIAYALSYLSKRLGDEKYIEELLKRILNIIENSISNDSNNDYDLLSGLAG 110 (355)
T ss_dssp HHHHHHHHCCCHHCC-----S--STTTSCHHHHHHHHHHCCCTCHHHHHHHHHHHHHHCHHHHHHCT--GGCSTTTSHHH
T ss_pred HHHHHHHHHHHHHhcc---CcCCcccCChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhcccccchhhcccHH
Confidence 4444445545444321 238999999999999999999998876655 2333333222222221 22 899999999
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhhhhhhhcC------------CCCCCcccccCchHHHHHHHHHH-HHhccccch
Q psy13779 293 PIAVSALIYKALGKQEKLESSVQKLKALAPHLVDL------------RSDIPDEILYGRAGYLYSLLFVN-KHIKSVNIE 359 (692)
Q Consensus 293 i~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~dll~G~AG~l~~L~~l~-~~~~d~~~~ 359 (692)
++.++..+++..++++.++...+.+..+.+...+. ......++.+|.+|++++|..++ +.++++.+.
T Consensus 111 i~~~ll~~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~ 190 (355)
T PF05147_consen 111 IGLYLLSLYEKTKDPKYLDIIEKILEKLLESIINDDPSENQIGSEWKEGFINLGFAHGIAGILYALLRLYKKGTKDPEYL 190 (355)
T ss_dssp HHHHHCCHHHHHCCHHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCHTTBEE-STTTSHHHHHHHHCHCCHHT--HHHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcccccCCCccccCCCCccCCccccHHHHHHHHHHhhhcccCchhHH
Confidence 99999999988877775544333344444333221 01123477788888888888887 466554443
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcccccccCCccchhHHHHHHHhhcccCchhHhhhHHHHHHHHhhccCCC
Q psy13779 360 ASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPS 439 (692)
Q Consensus 360 ~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~~~lG~ahG~aGIl~~Ll~l~~~~~~~~~~~i~~~i~~l~~~~~~~ 439 (692)
+.++++++.+.+.... .+
T Consensus 191 -~~i~~~~~~~~~~~~~-------------------------------------------------------------~~ 208 (355)
T PF05147_consen 191 -KLIEQILNFLLKHFNT-------------------------------------------------------------DD 208 (355)
T ss_dssp -HCHHHHHHHHHHC--T-------------------------------------------------------------GC
T ss_pred -HHHHHHHHHHHHhcCc-------------------------------------------------------------cc
Confidence 2333333333322110 00
Q ss_pred CCCCCCCCCCCCcccccccCchhHHHHHHHHHhhcCcHHHHHHHHhccCCCcccccCcccccccCC-CccCcccchhHHH
Q psy13779 440 GNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDK-NYYGAAHGVTGIL 518 (692)
Q Consensus 440 ~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~-~~~G~~HG~sGI~ 518 (692)
++ |+.... .... ...+||||.+||+
T Consensus 209 ~~---------------------------------------------------~~~~~~---~~~~~~~~~WC~G~~Gi~ 234 (355)
T PF05147_consen 209 GG---------------------------------------------------WPDNRN---NSNYKSRPSWCYGSPGIL 234 (355)
T ss_dssp CT-----------------------------------------------------SECT---HHHHHC--SSSSSHHHHH
T ss_pred CC---------------------------------------------------CCCCCC---ccccccccccccCcHHHH
Confidence 01 111000 0000 0579999999999
Q ss_pred HHHHHcccCChH-HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy13779 519 FTLLKSNVLTDK-ERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKS 597 (692)
Q Consensus 519 ~~Ll~~~~~~~~-~~~~~i~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~ 597 (692)
+++.++.+..++ .+.+.++++++.+.+... ....+++|||.+|++.++..+++.++++++.+.+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~ 302 (355)
T PF05147_consen 235 LALLKAYKILDDEEYDEEAEQALESILQKGL------------FLNNPSLCHGTAGILEILLDLYKYTGDEEYKELANKL 302 (355)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHHH-T------------CTTSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHccc------------cCCCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998876664 688888888887776431 0124699999999999999999999999888888877
Q ss_pred hHHHHHcCC----------CCCCCccccchHHHHHHHHHHHHhcC
Q psy13779 598 SDNVWHAGL----------LRKGYSLCHGVSGNAYAFLTAYHTTH 632 (692)
Q Consensus 598 ~~~i~~~g~----------~~~~~gLChG~aGi~~~ll~l~~~t~ 632 (692)
.+.+.+... ...+.+++.|.+|++++++++.+.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~Gi~~~ll~~~~~~~ 347 (355)
T PF05147_consen 303 IQKLLSYYDENGYFPGEPRYRISFGLMTGIAGILYALLRLLNPDK 347 (355)
T ss_dssp HHHHCTTCCC---HHHTS-STTTTSTTTSHHHHHHHHHHHCSGGG
T ss_pred HHHHHHHhhccccccCCCCCCCCCCccccHHHHHHHHHHhcCCCC
Confidence 654432211 14779999999999999999876543
No 16
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=99.83 E-value=2.6e-19 Score=200.40 Aligned_cols=303 Identities=20% Similarity=0.267 Sum_probs=205.6
Q ss_pred CCCCccccccHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHhhccCCcccccCChHHHHHHHHHHHHhCChHHHHHHH
Q psy13779 236 DHDYSVYVGTSGQAMFYYIYYQRTH-DSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSV 314 (692)
Q Consensus 236 ~~~~sLY~G~aGIal~l~~L~~~t~-~~~yl~~A~~~i~~~l~~~~~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l 314 (692)
+.=++--.|.+=....+...--.+. .+-+...-....+.+..++...+++.++|.+|.+|++..++...+|....+++.
T Consensus 643 ~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~~L~~~~~sv~~~~~~~~iga~~G~~g~~yal~~I~~~~~~~~l~~~~~ 722 (963)
T COG4403 643 NDLYDGSAGIALFFAYLALVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAFTGLSGYFYALWKIYSVTRDNYLIQSAE 722 (963)
T ss_pred chhhcCcchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhccCCcccccccccchhhhhhHHHHHhcccHHHHHHHH
Confidence 4444444566655444443322211 122333333333333334445689999999999999999999988877555444
Q ss_pred HHHHhhhhhhhcCCCCCCcccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcccc
Q psy13779 315 QKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDK 394 (692)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~ 394 (692)
+.+..+.. ++. .+...|++.|.+|+++.|..+|+.+.++++. +.+....+.+.+......+ |. +
T Consensus 723 ~~i~~le~-~v~--~~~~~d~i~Gl~g~i~~L~~iYk~~~epk~l-~~ais~~~~l~~~~v~~d~-----------s~-~ 786 (963)
T COG4403 723 NSIRHLEI-LVQ--KSKDPDFINGLAGVICVLVSIYKLTDEPKFL-ELAISLGRILMEKIVGNDS-----------SE-T 786 (963)
T ss_pred HHHHHHHH-HHh--hccCcchhhccHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHhhcccc-----------cc-c
Confidence 44443222 121 2335789999999999999999999888776 4566666666654432111 11 2
Q ss_pred cccCCccchhHHHHHHHhhcccCchh-HhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHhh
Q psy13779 395 NYYGAAHGVTGILFTLLKSNVLTDKE-RDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYET 473 (692)
Q Consensus 395 ~~lG~ahG~aGIl~~Ll~l~~~~~~~-~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~ 473 (692)
-.+|+.||++||+++|+++++.|+++ ..+.+++.+-. ++.
T Consensus 787 ~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~~~~---Er~------------------------------------ 827 (963)
T COG4403 787 VLLGFSHGASGIILTLLKLYEATGEESLLKKIKELLSY---ERM------------------------------------ 827 (963)
T ss_pred eecccccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---HHH------------------------------------
Confidence 45899999999999999999988776 23333332211 100
Q ss_pred cCcHHHHHHHHhccCCCcccccCcccccccCCCccCcccchhHHHHHHHHcccC-ChHHHHHHHHHHHHHHHHhcCCCCC
Q psy13779 474 YNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVL-TDKERDTLVKPTLDALLDETFPSGN 552 (692)
Q Consensus 474 ~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~-~~~~~~~~i~~~l~~l~~~~~~~g~ 552 (692)
. ++ ...+-||||+.||+.+.+.+.+. .++.+.+.+++++.+.....+
T Consensus 828 ----~-----------------------f~-~~~~~Wc~g~~gilv~rl~l~~~~~de~i~~Ei~~~l~~~i~~gl---- 875 (963)
T COG4403 828 ----K-----------------------FS-DKFTRWCSGAPGILVSRLLLKKIYDDESIDREIQQALKTIINNGL---- 875 (963)
T ss_pred ----H-----------------------HH-HHHHHHhcCCcceeechhhhhhhcchHHHHHHHHHHHHHHHhccC----
Confidence 0 00 01357999999999998777654 446799999999999988754
Q ss_pred CCCCCCCCCCccccccCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHH--------HHcCCC--CCCCccccchHHHHH
Q psy13779 553 LKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNV--------WHAGLL--RKGYSLCHGVSGNAY 622 (692)
Q Consensus 553 w~~~~~~~~~~~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i--------~~~g~~--~~~~gLChG~aGi~~ 622 (692)
+ +.+.|||+.|++.+++.+++.++|++.++.|.+.+... |+.|+. ..+.|||.|++|++|
T Consensus 876 -----g-----n~~~Chgdfg~ie~l~~~a~~l~~~~l~es~~~~~~~~~~k~~~~g~~~~~~~~~~~~glm~GvtGigY 945 (963)
T COG4403 876 -----G-----NDSLCHGDFGIIEVLLHYAKILSDSELLESANKLANELVSKAITYGINQGLNHANESFGLMNGVTGIGY 945 (963)
T ss_pred -----C-----CccccccchHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccccccccCCCccchhHHHhhhHHHHH
Confidence 2 23899999999999999999999999999988876433 223332 357899999999999
Q ss_pred HHHHHHHhcCCHH
Q psy13779 623 AFLTAYHTTHAEE 635 (692)
Q Consensus 623 ~ll~l~~~t~d~~ 635 (692)
.|||+..+.-.|+
T Consensus 946 ~lLR~~~p~~vps 958 (963)
T COG4403 946 SLLRISSPKFVPS 958 (963)
T ss_pred HHHHHhCcccCCc
Confidence 9999987754443
No 17
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.05 Score=62.20 Aligned_cols=296 Identities=17% Similarity=0.151 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhhHHHHHhccccc-CCccccc-----------------ccchHHHHHHHHhhcCc
Q psy13779 11 PGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRK-GYSLCHG-----------------VAGNAYAFLTAYHTTHA 72 (692)
Q Consensus 11 pg~~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~g~l~k-g~~lchG-----------------~ag~~~~~l~~~~~t~~ 72 (692)
|..+..|.+.+...+|+..++.+.+..+.+-..|+=.. |.|++-= =|...+++...|+.|||
T Consensus 212 ~~~l~~Llr~~~~~~d~~~~~~~~~TL~~ma~GGIyDhlgGGF~RYStD~~WlvPHFEKMLyDnA~l~~~y~~ay~~tgd 291 (667)
T COG1331 212 PHLLLFLLRYSLRTGDERALDMVLRTLDAMARGGIYDHLGGGFFRYSTDREWLVPHFEKMLYDNALLLRAYAEAYRATGD 291 (667)
T ss_pred hHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCCccccCCceeeeecCCceechhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45667777777778899999999999888877776643 4444321 15677888999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCCCCCC-CccccchHHHHHHHHhhcCCCcccccccCCCccHHHHHHHHhhhcccCcch
Q psy13779 73 EEQMYRALCFANWVTGYNKHEDTTPDRP-YSLYEGKVGVAFFLLDILKPTNAKWNQEYPNINIENLIAHLMRERTDYDTD 151 (692)
Q Consensus 73 ~~~l~ra~~~a~~~~~~~~~~~~~~~~p-~sl~eG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (692)
+.|...|.....|+.... ..|+.- ||-..+.+.. ++ -.|.....+++ ...+. +|
T Consensus 292 ~~y~~~a~~i~~~l~rel----~sp~ggFyss~DAD~~g----------~E----G~~Y~Ws~eEi-~~~Lg------~d 346 (667)
T COG1331 292 DLYRRAAEGILDYLLREL----YSPEGGFYSSLDADSDG----------EE----GKYYTWSVEEL-KEVLG------ED 346 (667)
T ss_pred HHHHHHHHHHHHHHHHHh----cCCCCceeecccccCcc----------cC----CCeeecCHHHH-HHHhc------cc
Confidence 999999999999987632 223321 1111111110 11 13444444432 22332 12
Q ss_pred hhhhhhhhhhhhhhhhcccccccccCCCCCCCCCCCCCCcccccccccccccccCchHHHHHHHHHHHHHHHHHhhcccc
Q psy13779 152 YKSLMLFHSYEIKTARSVKMETKHSSRHHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETS 231 (692)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (692)
+.- ..-.|.|. +.. .|+|.+--... .... ...++..++++..-+.++..=++..+
T Consensus 347 ~~~--~~~~f~vs-----------~~G-------nfeGrnvL~~~--~~~~-~~~~~~~~~l~~~r~kL~~~R~~R~~-- 401 (667)
T COG1331 347 AEL--ACKYFDVS-----------EEG-------NFEGRNVLHVP--GPLE-EAIEEAEEKLERAREKLLAAREKRKQ-- 401 (667)
T ss_pred HHH--HHHHcccC-----------CCC-------CcCCceeeccc--Cchh-hhhhhhHHHHHHHHHHHHHHHHhCCC--
Confidence 111 11112222 011 11111000000 0000 00123333443333322221122211
Q ss_pred CCCCCCCCccccccHHHHH-HHHHHHhccCChHHHHHHHHHHHHHHHhhccC--CcccccCChHH----------HHHHH
Q psy13779 232 DKFRDHDYSVYVGTSGQAM-FYYIYYQRTHDSKYLDKAQKLIERSLKNLKNR--RFSFLNGDAGP----------IAVSA 298 (692)
Q Consensus 232 ~~~~~~~~sLY~G~aGIal-~l~~L~~~t~~~~yl~~A~~~i~~~l~~~~~~--~~s~~~G~aGi----------~~~~~ 298 (692)
...|.-++|++-|.+. .|.+.++++++++|++.|++..+-+.+++... ...++.|.+.+ +..+.
T Consensus 402 ---P~~Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leDYA~~i~gll 478 (667)
T COG1331 402 ---PSRDDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLEDYAFLILGLL 478 (667)
T ss_pred ---CCCCcceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCcccccccchhHHHHHHHHH
Confidence 1468899999999865 47889999999999999999998887776421 34455555422 23456
Q ss_pred HHHHHhCChHHHHHHHHHHHhhhhhhhcCC------------------CCCCcccccCchHHHHHHHHHHHHhccccch
Q psy13779 299 LIYKALGKQEKLESSVQKLKALAPHLVDLR------------------SDIPDEILYGRAGYLYSLLFVNKHIKSVNIE 359 (692)
Q Consensus 299 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~~~~dll~G~AG~l~~L~~l~~~~~d~~~~ 359 (692)
.+|+.+++.+.++..++-..+++..+-+.. +.......+|.|=++..|..|...+++..|.
T Consensus 479 ~lye~t~d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~ 557 (667)
T COG1331 479 ALYEATGDLAYLEKAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYL 557 (667)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHH
Confidence 678899998877655443333332221110 1112344467788999999999999998876
No 18
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0058 Score=69.58 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhHHHHHhcccccCCcccccc-cch-------------HHHHHHHHhhcCchhHHHH
Q psy13779 13 FISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGV-AGN-------------AYAFLTAYHTTHAEEQMYR 78 (692)
Q Consensus 13 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~g~l~kg~~lchG~-ag~-------------~~~~l~~~~~t~~~~~l~r 78 (692)
++.+|+.|++++++|+|+++|++|++-|-+. +.++ -|||+. .|. ..+++.||..|+|.+||..
T Consensus 416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~--l~~~-rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~ 492 (667)
T COG1331 416 MIAALAEAGRVLGDPEYLEAAERAADFILDN--LYVD-RLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEK 492 (667)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHh--hccc-chheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHH
Confidence 5789999999999999999999999876544 2333 677764 222 2456679999999999999
Q ss_pred HHHHHHHhhc
Q psy13779 79 ALCFANWVTG 88 (692)
Q Consensus 79 a~~~a~~~~~ 88 (692)
|.++++-+..
T Consensus 493 A~~L~~~~i~ 502 (667)
T COG1331 493 AIELADEAIA 502 (667)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 19
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.05 E-value=0.022 Score=62.37 Aligned_cols=249 Identities=11% Similarity=-0.109 Sum_probs=141.7
Q ss_pred chhHHHHHHHhhcccCch-hHhhhHHHHHHHHhhccCC-C-CCCCCCCC-CCCCccccc-ccCchhHHHHHHHHHhhcCc
Q psy13779 402 GVTGILFTLLKSNVLTDK-ERDTLVKPTLDALLHETFP-S-GNLKSSHG-SDSDRLVQW-CHGSPGFTSLLQVAYETYND 476 (692)
Q Consensus 402 G~aGIl~~Ll~l~~~~~~-~~~~~i~~~i~~l~~~~~~-~-~n~~~~~~-~~~~~~~d~-~~G~aGii~~Ll~ly~~~~~ 476 (692)
..+=.++++...+..+++ ++.+.+++.++.+.+.... . |.+-.+.. ......... +...+=++..+..+|+.+++
T Consensus 54 ~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d 133 (384)
T cd00249 54 LQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGD 133 (384)
T ss_pred EecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCC
Confidence 455678888888887744 4788889999998875432 2 43322211 111111122 34456677788899999999
Q ss_pred HHHHHHHHhccCCCcccc-cCcccccccCCCccCcccchhHH---HHHHHHcccCChH-HHHHHHHHHHHHHHHhcCC--
Q psy13779 477 KKYLDALLKSSDNFVSWS-FGECEYEWHDKNYYGAAHGVTGI---LFTLLKSNVLTDK-ERDTLVKPTLDALLDETFP-- 549 (692)
Q Consensus 477 ~~~l~~~~~~~~~~~~w~-~~~~~~~~~~~~~~G~~HG~sGI---~~~Ll~~~~~~~~-~~~~~i~~~l~~l~~~~~~-- 549 (692)
+++++.+++..+...... ..............+-.++..+. +.+++.++.++++ ++.+.++++++.+.+....
T Consensus 134 ~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~ 213 (384)
T cd00249 134 PEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFIDAE 213 (384)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcc
Confidence 999998777543221110 00000000000000011112222 2346666777775 6888899888888876542
Q ss_pred CCCCCCCCCCC------CCccccccCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHcCCCCCCCcccc-c------
Q psy13779 550 SGNLKSSHGSD------SDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCH-G------ 616 (692)
Q Consensus 550 ~g~w~~~~~~~------~~~~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~g~~~~~~gLCh-G------ 616 (692)
+|.++.....+ ......+-.+..=.+..++.+++.++++++.+.+.++.+.+.+.+.-...-+++. .
T Consensus 214 ~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~~~~~ 293 (384)
T cd00249 214 SGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYYSFLDDGGL 293 (384)
T ss_pred cCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEEeeECCCCC
Confidence 34332211110 0011122222222445677888889999999999999887777664211123333 1
Q ss_pred ----------hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q psy13779 617 ----------VSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGY 650 (692)
Q Consensus 617 ----------~aGi~~~ll~l~~~t~d~~~l~~a~~~~~~l~~~ 650 (692)
.+=.+.+++.+++.++|++|++.+.++.+++...
T Consensus 294 ~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~ 337 (384)
T cd00249 294 LEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRH 337 (384)
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 1123455778899999999999999888777553
No 20
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=96.83 E-value=0.25 Score=54.11 Aligned_cols=78 Identities=14% Similarity=-0.042 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhHHHHHhcccccCCcccccc-----------cchHHHH-----HHHHhhcCchhHH
Q psy13779 13 FISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGV-----------AGNAYAF-----LTAYHTTHAEEQM 76 (692)
Q Consensus 13 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~g~l~kg~~lchG~-----------ag~~~~~-----l~~~~~t~~~~~l 76 (692)
+|.+++.|+.++++++|++.|+++.+-+.+...=....|+.|-+ .-+.|+| ..+|+.|+|++|+
T Consensus 58 ~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l 137 (384)
T cd00249 58 QVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEAR 137 (384)
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHH
Confidence 68899999999999999999999988776642211112344433 2334444 4589999999999
Q ss_pred HHHHHHHHHhhcCC
Q psy13779 77 YRALCFANWVTGYN 90 (692)
Q Consensus 77 ~ra~~~a~~~~~~~ 90 (692)
.+|.+.++++...+
T Consensus 138 ~~A~~~~~~l~~~~ 151 (384)
T cd00249 138 ALAEETIDLLERRF 151 (384)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
No 21
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.29 E-value=0.3 Score=52.60 Aligned_cols=240 Identities=16% Similarity=0.071 Sum_probs=129.1
Q ss_pred hH-HHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcccccccCCccchhHHHHHHHhhcccCc
Q psy13779 340 AG-YLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTD 418 (692)
Q Consensus 340 AG-~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~~~lG~ahG~aGIl~~Ll~l~~~~~ 418 (692)
.| +..++..+++.++|+.+. +.+++..+..++.... ... + -+= .+...++.+++.++
T Consensus 27 ~G~~~~gl~~~~~~tgd~~~~-~~a~~~~~~~~~~~~~-------~~~----------~--d~~--~~g~~~~~~y~~t~ 84 (336)
T PF07470_consen 27 NGVFWYGLLEAYEYTGDERYL-DYAERWADRFIEEDGS-------DYN----------L--DDH--DIGFLLLDLYERTG 84 (336)
T ss_dssp HHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHT-------TTS----------C--CGT--THHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHhccCC-------ccC----------C--chh--hhHHHHHHHHHHhC
Confidence 44 666778889999998876 4555555555544321 000 1 111 22334455666665
Q ss_pred hh-HhhhHHHHHHHHhhccC--CCCCCCCCCCCCCCcccccccCchhHHHHHHHHHhhcCcHHHHHHHHhccC-------
Q psy13779 419 KE-RDTLVKPTLDALLHETF--PSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSD------- 488 (692)
Q Consensus 419 ~~-~~~~i~~~i~~l~~~~~--~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~~~~~~l~~~~~~~~------- 488 (692)
++ +++.+.+..+.++.... +.|.+. .......--|+.+..=....|...++.++++++++.+.+...
T Consensus 85 d~~y~~~~~~~a~~~l~~~~~~~~G~~~---~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~ 161 (336)
T PF07470_consen 85 DEKYKDAAIQAADWLLARRPRTSDGGFW---HNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLY 161 (336)
T ss_dssp THHHHHHHHHHHHHHHHTSCBECTGCBE---CTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCCccc---cCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcc
Confidence 44 77778888886655332 233221 112233444677776677888899999999999997766321
Q ss_pred -CCc-ccccCcccccccCCCccCcccchhHHHHHHHHcccCCh------HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy13779 489 -NFV-SWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTD------KERDTLVKPTLDALLDETFPSGNLKSSHGSD 560 (692)
Q Consensus 489 -~~~-~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~~------~~~~~~i~~~l~~l~~~~~~~g~w~~~~~~~ 560 (692)
... .|................|+-|.+=.++++...++..+ +.+.+.+++.++.+.+.+.++|.|+..+.+.
T Consensus 162 d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~ 241 (336)
T PF07470_consen 162 DPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDP 241 (336)
T ss_dssp -TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTT
T ss_pred CCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCC
Confidence 110 11100000000001113477666555555555554321 2577778888888887766678886544332
Q ss_pred CCccccccCCchHHHHHHHHHH-Hh-cCCHHHHHHHHHHhHHHHHc
Q psy13779 561 SDRLVQWCHGSPGFISLLQVAY-ET-YNDKKYLDALLKSSDNVWHA 604 (692)
Q Consensus 561 ~~~~~~wCHG~~Gi~~~l~~~~-~~-~~d~~~~~~a~~~~~~i~~~ 604 (692)
.....-=--|++.++.++++.. .- .++++|.+.+.++.+.+.++
T Consensus 242 ~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 242 DPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSN 287 (336)
T ss_dssp TTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHC
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhC
Confidence 1001111124455555565532 22 34678999999988877665
No 22
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=96.06 E-value=0.24 Score=52.04 Aligned_cols=234 Identities=18% Similarity=0.115 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcccccccCCccchhHHHHHHHhhcccCchh-H
Q psy13779 343 LYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKE-R 421 (692)
Q Consensus 343 l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~~~lG~ahG~aGIl~~Ll~l~~~~~~~-~ 421 (692)
++.+..+++.|+|++|. +.++...+..+..+ . .|.+ ++ -|=.+ ...|+-+++.++++ +
T Consensus 42 lyGv~~~~eAT~d~~yl-~~l~~~~d~~i~~~--------g-~~~~-------~i--d~i~~--g~~L~~L~e~T~~~~Y 100 (357)
T COG4225 42 LYGVARAYEATGDAEYL-DYLKTWFDEQIDEG--------G-LPPR-------NI--DHIAA--GLTLLPLYEQTGDPRY 100 (357)
T ss_pred HHHHHHHHHHcCcHHHH-HHHHHHHHhhhccC--------C-CCcc-------ch--hhhcc--CceeeehhhhhCCHHH
Confidence 45667888889999887 34444444333322 0 1111 11 11111 24566677777655 7
Q ss_pred hhhHHHHHHHHhhcc-CCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHhhcCcHHHHHHHHhc--------cCCC--
Q psy13779 422 DTLVKPTLDALLHET-FPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKS--------SDNF-- 490 (692)
Q Consensus 422 ~~~i~~~i~~l~~~~-~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~~~~~~l~~~~~~--------~~~~-- 490 (692)
++.+++..+++.... ...|.+ |.......--|+.|+-=-.+.++++.+.++++++++.+... .+..
T Consensus 101 l~~a~~~a~~l~~~~Rt~eG~f---~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TG 177 (357)
T COG4225 101 LEAAIKLASWLVHEPRTKEGGF---QHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDPETG 177 (357)
T ss_pred HHHHHHHHHHHhhCcccCCCcc---ccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCCCcC
Confidence 888888888877643 122211 11112223347777766677888999999999999865442 2222
Q ss_pred ---cccccCcccccccCCC----ccCcccchhHHHHHHHHcccCCh----H--HHHHHHHHHHHHHHHhcCCCCCCCCCC
Q psy13779 491 ---VSWSFGECEYEWHDKN----YYGAAHGVTGILFTLLKSNVLTD----K--ERDTLVKPTLDALLDETFPSGNLKSSH 557 (692)
Q Consensus 491 ---~~w~~~~~~~~~~~~~----~~G~~HG~sGI~~~Ll~~~~~~~----~--~~~~~i~~~l~~l~~~~~~~g~w~~~~ 557 (692)
-.|..+. .-.| ... ..=|+-|++=+++++..+.+..+ + .+.+..+..++.+++.+.++|.|-..+
T Consensus 178 L~YH~wd~~~-~~~w-~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~tiL 255 (357)
T COG4225 178 LYYHGWDEDG-TMPW-ANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDESGLWHTIL 255 (357)
T ss_pred ceEEeeccCC-CCcc-ccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhccccchhhhh
Confidence 1232211 0011 112 23477777777777777665322 2 477778888899999888889998776
Q ss_pred CCCCCccccccCCchHHHHHHHHHHHh-cCCHHHHHHHHHHhHHHH
Q psy13779 558 GSDSDRLVQWCHGSPGFISLLQVAYET-YNDKKYLDALLKSSDNVW 602 (692)
Q Consensus 558 ~~~~~~~~~wCHG~~Gi~~~l~~~~~~-~~d~~~~~~a~~~~~~i~ 602 (692)
.+....+.-=-.|++|+++++++..+. .-++++...++++.+.+.
T Consensus 256 Dd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl 301 (357)
T COG4225 256 DDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALL 301 (357)
T ss_pred ccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Confidence 653222333346889999999987654 345566666666655443
No 23
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=95.99 E-value=0.24 Score=52.04 Aligned_cols=253 Identities=18% Similarity=0.199 Sum_probs=136.3
Q ss_pred ccccCchhHHHHHHHHHHHcCCHHHHHHHHHhhH-HHHHhcccccCCcccccccchHHHHHHHHhhcCchhHHHHHHHHH
Q psy13779 5 QWCHGSPGFISLLQVAYETYNDKKYLDALLKSSD-NVWHAGLLRKGYSLCHGVAGNAYAFLTAYHTTHAEEQMYRALCFA 83 (692)
Q Consensus 5 ~wchgapg~~~~~~~a~~~~~~~~~~~~~~~~~~-~~w~~g~l~kg~~lchG~ag~~~~~l~~~~~t~~~~~l~ra~~~a 83 (692)
.||.=.-=+.+-+++++++.+|++|++.++.-.+ .+=+-|+-.+ .|=|=.+| .+++-||..|+||+|+..|.+.|
T Consensus 33 ~Wdwe~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g~~~~--~id~i~~g--~~L~~L~e~T~~~~Yl~~a~~~a 108 (357)
T COG4225 33 RWDWEQGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDEGGLPPR--NIDHIAAG--LTLLPLYEQTGDPRYLEAAIKLA 108 (357)
T ss_pred cccccccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCCCCcc--chhhhccC--ceeeehhhhhCCHHHHHHHHHHH
Confidence 4665544456889999999999999999999444 5555555543 44444444 46777899999999999999999
Q ss_pred HHhhcCC--CCC--CCCCCCCCcc-ccchHHHHHHHHhhcCCCcccccccCCCccHHHHHHHHhhhcccCcchhhhhhhh
Q psy13779 84 NWVTGYN--KHE--DTTPDRPYSL-YEGKVGVAFFLLDILKPTNAKWNQEYPNINIENLIAHLMRERTDYDTDYKSLMLF 158 (692)
Q Consensus 84 ~~~~~~~--~~~--~~~~~~p~sl-~eG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (692)
.++.... ++. .+.--.|+-+ ..|+-=+..|++-. ++.+-.-+..+.+..-+.--.+|-.|-++=..+
T Consensus 109 ~~l~~~~Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~--------g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~Y 180 (357)
T COG4225 109 SWLVHEPRTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKY--------GQVTGRPEYFDEALYQFSLHEKYLRDPETGLYY 180 (357)
T ss_pred HHHhhCcccCCCccccccCchhHhhhcchhhhhHHHHHH--------HHHhCCHHHHHHHHHHHHHHHHHccCCCcCceE
Confidence 9987754 211 2233356543 12222223343333 333333344455555555455677777777788
Q ss_pred hhhhhhhhhccccccccc-CCCCCCCCCCC-CCCccccccccccccc----ccCchHHHHHHHHHHHHHHHH-----Hhh
Q psy13779 159 HSYEIKTARSVKMETKHS-SRHHQNKYKYG-EGEKSKLFTVENKEKI----VLHPSFETKVWATLTRLIEDI-----DSE 227 (692)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~-~r~~~n~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----~~~ 227 (692)
|.|.-+.- |. .+-+.+. |-| .-..++....-.. -+ ..++ -...+.+.+++++..| +.+
T Consensus 181 H~wd~~~~--------~~w~~~~sG~-~~fWaRg~gW~~mal~d-~le~lp~~~~-~r~~l~~~l~d~v~al~r~Qde~G 249 (357)
T COG4225 181 HGWDEDGT--------MPWANNESGE-PAFWARGNGWYAMALAD-LLELLPEDHP-DRRELLNVLRDLVDALIRYQDESG 249 (357)
T ss_pred EeeccCCC--------CccccccCCC-ceeeecccchHHHHHHH-HHHhCCCCCc-hHHHHHHHHHHHHHHHHHhhcccc
Confidence 88865531 11 1111121 111 1111211100000 00 0122 2233444444444443 223
Q ss_pred ccc--cCCCCCCCCccccccHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHhhc
Q psy13779 228 YET--SDKFRDHDYSVYVGTSGQAMFYYIYYQR-THDSKYLDKAQKLIERSLKNLK 280 (692)
Q Consensus 228 ~~~--~~~~~~~~~sLY~G~aGIal~l~~L~~~-t~~~~yl~~A~~~i~~~l~~~~ 280 (692)
+|- .|..++.+.==-+|++|||+.++.--+. .-+++|...|++.++.++..+.
T Consensus 250 lW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~ 305 (357)
T COG4225 250 LWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHID 305 (357)
T ss_pred chhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhcc
Confidence 332 2221233333336888888887762222 1245677888888888777765
No 24
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=94.36 E-value=0.13 Score=53.59 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=81.1
Q ss_pred hhHHHHHHHHcccCChH-HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCc--cccccCCch-HHHHHHHHHHHhcCCH-
Q psy13779 514 VTGILFTLLKSNVLTDK-ERDTLVKPTLDALLDETFPSGNLKSSHGSDSDR--LVQWCHGSP-GFISLLQVAYETYNDK- 588 (692)
Q Consensus 514 ~sGI~~~Ll~~~~~~~~-~~~~~i~~~l~~l~~~~~~~g~w~~~~~~~~~~--~~~wCHG~~-Gi~~~l~~~~~~~~d~- 588 (692)
+.--+.+|++++..+++ ++.+.+.++++|+++.++++|.||...+....+ ...+=-++. +++.+|..+....++.
T Consensus 41 T~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~ 120 (289)
T PF09492_consen 41 TTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFA 120 (289)
T ss_dssp THHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTST
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCcc
Confidence 34556778888887775 799999999999999999999999765533221 223333333 4555666666554433
Q ss_pred --------HHHHHHHHHhHHHHHcCC-----------------C-------CCCCccccc-hHHHHHHHHHHHHhcCCHH
Q psy13779 589 --------KYLDALLKSSDNVWHAGL-----------------L-------RKGYSLCHG-VSGNAYAFLTAYHTTHAEE 635 (692)
Q Consensus 589 --------~~~~~a~~~~~~i~~~g~-----------------~-------~~~~gLChG-~aGi~~~ll~l~~~t~d~~ 635 (692)
++.+.+.+.++++.+.-+ + ..-|+||-+ ++||..+|+++.+++ ++
T Consensus 121 ~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps--~~ 198 (289)
T PF09492_consen 121 FVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS--PE 198 (289)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS----HH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC--HH
Confidence 445555555555544221 0 256899966 568888888887776 88
Q ss_pred HHHHHHHHHHHHHh
Q psy13779 636 QMYRALCFANWVTG 649 (692)
Q Consensus 636 ~l~~a~~~~~~l~~ 649 (692)
++........|+..
T Consensus 199 v~~aI~~AvaWl~~ 212 (289)
T PF09492_consen 199 VLAAIEAAVAWLES 212 (289)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHh
Confidence 88887777777643
No 25
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=94.33 E-value=0.088 Score=60.33 Aligned_cols=73 Identities=22% Similarity=0.197 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhHHHHHh-cccccCCcccccccch---HHHHHHHHhhcCchhHHHHHHHHHHH
Q psy13779 13 FISLLQVAYETYNDKKYLDALLKSSDNVWHA-GLLRKGYSLCHGVAGN---AYAFLTAYHTTHAEEQMYRALCFANW 85 (692)
Q Consensus 13 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~-g~l~kg~~lchG~ag~---~~~~l~~~~~t~~~~~l~ra~~~a~~ 85 (692)
++..|..+|+..++++.++.+.+.++.+.++ ..+..+++-.+|..|. -.++..||+.|||++||.-|..|.+.
T Consensus 130 ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~ 206 (520)
T PF07944_consen 130 LLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQ 206 (520)
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5567778889999999999999999988333 2233333334444444 48999999999999999999999874
No 26
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=94.32 E-value=0.4 Score=54.97 Aligned_cols=118 Identities=21% Similarity=0.214 Sum_probs=81.3
Q ss_pred CCh-HHHHHHHHHHHHHHHHhcCCCCC---CCCCC--CCCCCccc----cccCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q psy13779 527 LTD-KERDTLVKPTLDALLDETFPSGN---LKSSH--GSDSDRLV----QWCHGSPGFISLLQVAYETYNDKKYLDALLK 596 (692)
Q Consensus 527 ~~~-~~~~~~i~~~l~~l~~~~~~~g~---w~~~~--~~~~~~~~----~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~ 596 (692)
.++ +++++.+...++.+.+.+.++|. ++... .....-.. -||.| -++.+++..++.+++++.++.+.+
T Consensus 75 ~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~--~ll~gl~~~y~~tG~~~~L~v~~k 152 (520)
T PF07944_consen 75 YTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLG--KLLEGLIDYYEATGNERALDVATK 152 (520)
T ss_pred HCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHh--HHHHHHHHHHHHHCcHHHHHHHHH
Confidence 344 47889999999999998877654 33322 00111112 34422 355678888999999999999999
Q ss_pred HhHHHHH--cCCCC--CCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy13779 597 SSDNVWH--AGLLR--KGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANW 646 (692)
Q Consensus 597 ~~~~i~~--~g~~~--~~~gLChG~aGi~~~ll~l~~~t~d~~~l~~a~~~~~~ 646 (692)
.++.+.+ ..+.. ...-+..|-.|+-..|.++|+.|+|++|++.|..|.+.
T Consensus 153 ~ad~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~ 206 (520)
T PF07944_consen 153 LADWVYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQ 206 (520)
T ss_pred HHHHHHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9886622 11210 01234557888889999999999999999999988653
No 27
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=93.93 E-value=1.2 Score=49.85 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhhHHHHHhcccccCCccccc----ccc-----------hHHHHHHHHhhcCchhH
Q psy13779 13 FISLLQVAYETYN--DKKYLDALLKSSDNVWHAGLLRKGYSLCHG----VAG-----------NAYAFLTAYHTTHAEEQ 75 (692)
Q Consensus 13 ~~~~~~~a~~~~~--~~~~~~~~~~~~~~~w~~g~l~kg~~lchG----~ag-----------~~~~~l~~~~~t~~~~~ 75 (692)
++.+|+.|+.+|+ ||+|-+.++++++..|.... +.++.++- .++ -.++=..||+.|||++|
T Consensus 159 ~AAalA~As~v~k~~d~~~A~~~L~~A~~~~~~a~--~~~~~~~~~~~~~~~~~Y~~~~~~De~~wAA~~Ly~aTg~~~Y 236 (444)
T PF00759_consen 159 FAAALAAASRVFKDFDPAYAAQCLKAAKEAYAFAK--KNPGVYSDNPQPNGGGFYNSSGYEDELAWAAAELYRATGDESY 236 (444)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHH--HSTTHGGGTSTCTTTTTSHCS-SHHHHHHHHHHHHHHHT-HHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH--hCCCcccCCcccccCCcccCCCcccHHHHHHHHHHHhcCcHHH
Confidence 5678899999997 49999999999999999742 22333221 111 26888999999999999
Q ss_pred HHHHHHHHHHh
Q psy13779 76 MYRALCFANWV 86 (692)
Q Consensus 76 l~ra~~~a~~~ 86 (692)
+..|.++....
T Consensus 237 ~~~a~~~~~~~ 247 (444)
T PF00759_consen 237 LDYAKEYYDDL 247 (444)
T ss_dssp HHHHHHHCCTS
T ss_pred HHHHHHhHHhh
Confidence 99999887543
No 28
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=93.68 E-value=0.86 Score=47.58 Aligned_cols=134 Identities=12% Similarity=0.093 Sum_probs=85.2
Q ss_pred hhHHHHHHHHcccCChH-HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCc--cccccCC-chHHHHHHHHHHHhcC---
Q psy13779 514 VTGILFTLLKSNVLTDK-ERDTLVKPTLDALLDETFPSGNLKSSHGSDSDR--LVQWCHG-SPGFISLLQVAYETYN--- 586 (692)
Q Consensus 514 ~sGI~~~Ll~~~~~~~~-~~~~~i~~~l~~l~~~~~~~g~w~~~~~~~~~~--~~~wCHG-~~Gi~~~l~~~~~~~~--- 586 (692)
+.--+.+|++++..+++ .+.+.+.++++|+++.+.++|.||...+..... ...+|-. ...++.+|..+++..+
T Consensus 46 T~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~ 125 (290)
T TIGR02474 46 TVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFD 125 (290)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcc
Confidence 44566778888887775 799999999999999999999999765433211 2233333 3455556666554322
Q ss_pred --C----HHHHHHHHHHhHHHHHcC-----CC-------------------CCCCccccc-hHHHHHHHHHHHHhcCCHH
Q psy13779 587 --D----KKYLDALLKSSDNVWHAG-----LL-------------------RKGYSLCHG-VSGNAYAFLTAYHTTHAEE 635 (692)
Q Consensus 587 --d----~~~~~~a~~~~~~i~~~g-----~~-------------------~~~~gLChG-~aGi~~~ll~l~~~t~d~~ 635 (692)
+ ++....+.+.++.+.+.- .. ..-++||-+ ++||..+|+.+.+ .+++
T Consensus 126 ~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~--ps~~ 203 (290)
T TIGR02474 126 VFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPN--PSAE 203 (290)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCC--CCHH
Confidence 1 355555555555443311 10 145788865 5677777777654 4568
Q ss_pred HHHHHHHHHHHHHh
Q psy13779 636 QMYRALCFANWVTG 649 (692)
Q Consensus 636 ~l~~a~~~~~~l~~ 649 (692)
++........|+..
T Consensus 204 i~~ai~~A~~W~~~ 217 (290)
T TIGR02474 204 IKEAIRAGVAWFDT 217 (290)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777776777643
No 29
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=93.41 E-value=12 Score=40.09 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=61.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHhhccCCcccccCChHHHHHHHHHHHHhCChHHHHHHHHHHHhhhhhhhcC--
Q psy13779 250 MFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALAPHLVDL-- 327 (692)
Q Consensus 250 l~l~~L~~~t~~~~yl~~A~~~i~~~l~~~~~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-- 327 (692)
.-++.+++.|+|++|++.+.+..+..++.... ...... ..+..++..+|+.++|++..+..++.+..+.......
T Consensus 32 ~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~--~~~~d~-~~~g~~~~~~y~~t~d~~y~~~~~~~a~~~l~~~~~~~~ 108 (336)
T PF07470_consen 32 YGLLEAYEYTGDERYLDYAERWADRFIEEDGS--DYNLDD-HDIGFLLLDLYERTGDEKYKDAAIQAADWLLARRPRTSD 108 (336)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT--TTSCCG-TTHHHHHHHHHHHH-THHHHHHHHHHHHHHHHTSCBECT
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhccCC--ccCCch-hhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34568899999999999999988877665432 111111 1233344568899998875544333333233211110
Q ss_pred -----CCCC-CcccccCchHHHHHHHHHHHHhccccchHHHH
Q psy13779 328 -----RSDI-PDEILYGRAGYLYSLLFVNKHIKSVNIEASLI 363 (692)
Q Consensus 328 -----~~~~-~~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i 363 (692)
.... .--++.+.-=.+-+|....+.++|+++.+..+
T Consensus 109 G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~ 150 (336)
T PF07470_consen 109 GGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAV 150 (336)
T ss_dssp GCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHH
T ss_pred CccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHH
Confidence 0011 11233455446788888899999987764333
No 30
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=92.81 E-value=0.24 Score=54.28 Aligned_cols=77 Identities=23% Similarity=0.193 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhHHHHHhccc-ccCCcccccccchH------------------HHHHHHHhhcCch
Q psy13779 13 FISLLQVAYETYNDKKYLDALLKSSDNVWHAGLL-RKGYSLCHGVAGNA------------------YAFLTAYHTTHAE 73 (692)
Q Consensus 13 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~g~l-~kg~~lchG~ag~~------------------~~~l~~~~~t~~~ 73 (692)
++.+.++.|++.+++.|++.|.++-+=+-+-+|+ .+..-++.|+..+. -++..||+.|+++
T Consensus 160 ~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~ 239 (370)
T PF03663_consen 160 AAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDE 239 (370)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCc
Confidence 3444556677789999999999997633333677 33367777774443 4667799999887
Q ss_pred -hHHHHHHHHHHHhhcC
Q psy13779 74 -EQMYRALCFANWVTGY 89 (692)
Q Consensus 74 -~~l~ra~~~a~~~~~~ 89 (692)
.||.+|++++..+...
T Consensus 240 ~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 240 QTYLDRAEKLADAAINH 256 (370)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 9999999999998664
No 31
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.73 E-value=5.2 Score=44.46 Aligned_cols=136 Identities=14% Similarity=0.111 Sum_probs=89.6
Q ss_pred cCcccchhHHHHHHHHcccCChHHHHHHHHHHHHHHHHhcCCCCC---CCCCCC-CCCCccccccCCc--hHHH-HHHHH
Q psy13779 508 YGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGN---LKSSHG-SDSDRLVQWCHGS--PGFI-SLLQV 580 (692)
Q Consensus 508 ~G~~HG~sGI~~~Ll~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~---w~~~~~-~~~~~~~~wCHG~--~Gi~-~~l~~ 580 (692)
..+.|=.+-++++|..- .+..+.+.|..+++-+.+.+.++|. |....- ...-.+..+||=. +|-+ .....
T Consensus 66 sdlgkwlea~A~~l~~~---~dp~Lekr~D~vi~~~a~~QdedGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~va 142 (589)
T COG3533 66 SDLGKWLEAAAYSLANK---GDPELEKRIDEVVEELARAQDEDGYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGGVA 142 (589)
T ss_pred ccHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhhccCCcccceeeccCchhhhhccccchHHHHhHHHHhhhhH
Confidence 34555555566555442 2346777888888888888766543 543221 1122357888863 2322 24566
Q ss_pred HHHhcCCHHHHHHHHHHhHHHHH-cCCC-CCCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy13779 581 AYETYNDKKYLDALLKSSDNVWH-AGLL-RKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWV 647 (692)
Q Consensus 581 ~~~~~~d~~~~~~a~~~~~~i~~-~g~~-~~~~gLChG~aGi~~~ll~l~~~t~d~~~l~~a~~~~~~l 647 (692)
+++.++..++++.+.+.++.+.+ .|.. .+-++.| |--|+-.+|.++|+.|++++|++.|..|..+-
T Consensus 143 ~~qaTGkr~lldV~~rlADhi~tvfgp~~~q~~g~~-gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~r 210 (589)
T COG3533 143 AHQATGKRRLLDVVCRLADHIATVFGPEEDQVPGYC-GHPEIELALAELYRLTGDQRYLDLARRFIHQR 210 (589)
T ss_pred HHHhhCcchHHHHHHHHHHhhhhhcCcccccccccc-CCCchhHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 67789999999999888876543 1111 2334554 77789999999999999999999999987654
No 32
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=88.65 E-value=1.1 Score=49.00 Aligned_cols=75 Identities=24% Similarity=0.253 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCH-----HHHHHHHHhhHHHHHhccccc--CCcc--cc----------cccchHHHHH---HHHhhc
Q psy13779 13 FISLLQVAYETYNDK-----KYLDALLKSSDNVWHAGLLRK--GYSL--CH----------GVAGNAYAFL---TAYHTT 70 (692)
Q Consensus 13 ~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~w~~g~l~k--g~~l--ch----------G~ag~~~~~l---~~~~~t 70 (692)
++.++..||++.+++ +||+.|++..+.++ .|.=.. |.|| .. -...|+-+++ +||+.|
T Consensus 93 ~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~-~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t 171 (370)
T PF03663_consen 93 WALALLRAYELTGDQPSDNPKYLDLAKEIFDFLI-SGWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRIT 171 (370)
T ss_dssp HHHHHHHHHHHH--H-----HHHHHHHHHHHHHH-HTB-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHH-HhcCCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHHhc
Confidence 457888999999999 99999999988887 444432 3344 21 1135665554 489999
Q ss_pred CchhHHHHHHHHHHHhhc
Q psy13779 71 HAEEQMYRALCFANWVTG 88 (692)
Q Consensus 71 ~~~~~l~ra~~~a~~~~~ 88 (692)
+|++||..|.+...|+.+
T Consensus 172 ~~~~Yl~~A~~~~~W~~~ 189 (370)
T PF03663_consen 172 GDQTYLDWAKKIYDWMRD 189 (370)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhhc
Confidence 999999999999999975
No 33
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=88.01 E-value=1 Score=48.75 Aligned_cols=77 Identities=16% Similarity=0.049 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhHHHHHhcccccCCcccccc--------cchHH-----HHHHHHhhcCchhHHHHH
Q psy13779 13 FISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGV--------AGNAY-----AFLTAYHTTHAEEQMYRA 79 (692)
Q Consensus 13 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~g~l~kg~~lchG~--------ag~~~-----~~l~~~~~t~~~~~l~ra 79 (692)
++.+++. +.+.+++++++.|+++.+.+=++-.-.++.+.-+.. ..|.+ ++|.+|+.|+|++|+.+|
T Consensus 86 ~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a 164 (346)
T PF07221_consen 86 ALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRA 164 (346)
T ss_dssp HHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHH
Confidence 3556666 567889999999999888774331111211222211 13443 678899999999999999
Q ss_pred HHHHHHhhcCC
Q psy13779 80 LCFANWVTGYN 90 (692)
Q Consensus 80 ~~~a~~~~~~~ 90 (692)
.++++.+...+
T Consensus 165 ~~l~~~~~~~f 175 (346)
T PF07221_consen 165 EELLDLFLDRF 175 (346)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHH
Confidence 99999988644
No 34
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=86.06 E-value=6.2 Score=41.31 Aligned_cols=138 Identities=14% Similarity=0.075 Sum_probs=82.0
Q ss_pred CchhHHHHHHHHHhhcCcHHHHHHHHhccCC-------CcccccCcccccccCCCccCccc-chhHHHHHHHHcccC---
Q psy13779 459 GSPGFTSLLQVAYETYNDKKYLDALLKSSDN-------FVSWSFGECEYEWHDKNYYGAAH-GVTGILFTLLKSNVL--- 527 (692)
Q Consensus 459 G~aGii~~Ll~ly~~~~~~~~l~~~~~~~~~-------~~~w~~~~~~~~~~~~~~~G~~H-G~sGI~~~Ll~~~~~--- 527 (692)
++.--+..|+.+|+.++++.+.+.+.+..+. ...|+.-..... .....+-|+- ++..++-+|..+...
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~-~Y~~~ITfND~am~~vl~lL~~i~~~~~~ 123 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG-GYSDAITYNDNAMVNVLTLLDDIANGKDP 123 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC-CcccccccCcHHHHHHHHHHHHHHhccCC
Confidence 4567788899999999999999887774322 235553211000 0111122222 245677777555431
Q ss_pred ----Ch---HHHHHHHHHHHHHHHHhcCCCCC----CCCCCCCC-------C-CccccccCCc-hHHHHHHHHHHHhcCC
Q psy13779 528 ----TD---KERDTLVKPTLDALLDETFPSGN----LKSSHGSD-------S-DRLVQWCHGS-PGFISLLQVAYETYND 587 (692)
Q Consensus 528 ----~~---~~~~~~i~~~l~~l~~~~~~~g~----w~~~~~~~-------~-~~~~~wCHG~-~Gi~~~l~~~~~~~~d 587 (692)
.. +++...++++++++++.+.+.+. |....... + -..+++|-+- .||+.+|+.+. -.+
T Consensus 124 ~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~--~ps 201 (290)
T TIGR02474 124 FDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQP--NPS 201 (290)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCC--CCC
Confidence 11 36788999999999999877543 43222211 0 1357888664 47777776654 356
Q ss_pred HHHHHHHHHHhH
Q psy13779 588 KKYLDALLKSSD 599 (692)
Q Consensus 588 ~~~~~~a~~~~~ 599 (692)
+++++.+..+++
T Consensus 202 ~~i~~ai~~A~~ 213 (290)
T TIGR02474 202 AEIKEAIRAGVA 213 (290)
T ss_pred HHHHHHHHHHHH
Confidence 788777766653
No 35
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.55 E-value=2.4 Score=47.00 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=58.3
Q ss_pred cccccCc--hhH-HHHHHHHHHHcCCHHHHHHHHHhhHHHHHh-ccc-ccCCcccccccchHHHHHHHHhhcCchhHHHH
Q psy13779 4 VQWCHGS--PGF-ISLLQVAYETYNDKKYLDALLKSSDNVWHA-GLL-RKGYSLCHGVAGNAYAFLTAYHTTHAEEQMYR 78 (692)
Q Consensus 4 ~~wchga--pg~-~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~-g~l-~kg~~lchG~ag~~~~~l~~~~~t~~~~~l~r 78 (692)
++|||== -|- +-.+..++++.+.+..++.+.+-++-+-+. |.+ .|-.|.| |=.|---|+..||++|||++||.-
T Consensus 124 lr~~HelY~aghLieg~va~~qaTGkr~lldV~~rlADhi~tvfgp~~~q~~g~~-gH~eielAl~~Ly~~Tg~~rYL~L 202 (589)
T COG3533 124 LRPNHELYCAGHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFGPEEDQVPGYC-GHPEIELALAELYRLTGDQRYLDL 202 (589)
T ss_pred cccchHHHHhHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcCcccccccccc-CCCchhHHHHHHHHHhcChHHHHH
Confidence 4678751 111 122233567889999999999988866655 665 3335555 455667899999999999999999
Q ss_pred HHHHHHHh
Q psy13779 79 ALCFANWV 86 (692)
Q Consensus 79 a~~~a~~~ 86 (692)
|+.|-.+-
T Consensus 203 A~~Fi~~r 210 (589)
T COG3533 203 ARRFIHQR 210 (589)
T ss_pred HHHHHHHh
Confidence 99998763
No 36
>PLN00119 endoglucanase
Probab=83.32 E-value=2.8 Score=47.31 Aligned_cols=68 Identities=10% Similarity=0.058 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHcC--CHHHHHHHHHhhHHHHHhcccccCCcccccccc--------------hHHHHHHHHhhcCchhH
Q psy13779 12 GFISLLQVAYETYN--DKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAG--------------NAYAFLTAYHTTHAEEQ 75 (692)
Q Consensus 12 g~~~~~~~a~~~~~--~~~~~~~~~~~~~~~w~~g~l~kg~~lchG~ag--------------~~~~~l~~~~~t~~~~~ 75 (692)
.++.+|+.|+.+|+ ||.|-+.++++++..|+...-. +|..+.... -.|+=..||+.|||++|
T Consensus 181 ~~AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~--~g~y~~~~~~~~g~Y~ss~~~DEl~WAAawLY~aTgd~~Y 258 (489)
T PLN00119 181 ETAAAMAAASIAFAPSDPAYASILIGHAKDLFEFAKAH--PGLYQNSIPNAGGFYASSGYEDELLWAAAWLHRATNDQTY 258 (489)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHhC--CCcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHhCCHHH
Confidence 37788999999997 6999999999999999986543 344432211 23777889999999999
Q ss_pred HHHHHH
Q psy13779 76 MYRALC 81 (692)
Q Consensus 76 l~ra~~ 81 (692)
+..+..
T Consensus 259 l~~~~~ 264 (489)
T PLN00119 259 LDYLTQ 264 (489)
T ss_pred HHHHHh
Confidence 987553
No 37
>PLN02345 endoglucanase
Probab=83.20 E-value=3.1 Score=46.79 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhhHHHHHhcccccCCcccccc---cc-----------hHHHHHHHHhhcCchhHH
Q psy13779 13 FISLLQVAYETYN--DKKYLDALLKSSDNVWHAGLLRKGYSLCHGV---AG-----------NAYAFLTAYHTTHAEEQM 76 (692)
Q Consensus 13 ~~~~~~~a~~~~~--~~~~~~~~~~~~~~~w~~g~l~kg~~lchG~---ag-----------~~~~~l~~~~~t~~~~~l 76 (692)
++.+|+.|+.+|+ ||+|-+.++++++.+|+..-=. +|.+... ++ ..|+=..||+.|||.+|+
T Consensus 147 ~AAAlA~as~vfk~~D~~YA~~lL~~Ak~ly~fa~~~--~g~y~~~~~~~~~~Y~s~~~~DEl~WAAawLy~ATgd~~Yl 224 (469)
T PLN02345 147 TAAAMAAASLVFKSSDSTYSDTLLKHAKQLFNFADKY--RGSYSESIPEVQDYYNSTGYGDELLWAASWLYHATGDKTYL 224 (469)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhC--CCcccCCCCccCCCCCCcccccHHHHHHHHHHHHhCCHHHH
Confidence 7788999999996 6999999999999999884433 3444321 11 267888999999999999
Q ss_pred HHHH
Q psy13779 77 YRAL 80 (692)
Q Consensus 77 ~ra~ 80 (692)
..+.
T Consensus 225 ~~~~ 228 (469)
T PLN02345 225 AYVT 228 (469)
T ss_pred HHHH
Confidence 9874
No 38
>PLN02266 endoglucanase
Probab=82.45 E-value=4.1 Score=46.21 Aligned_cols=70 Identities=10% Similarity=0.019 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhhHHHHHhcccccCCccccc-cc----------c-----hHHHHHHHHhhcCchh
Q psy13779 13 FISLLQVAYETYN--DKKYLDALLKSSDNVWHAGLLRKGYSLCHG-VA----------G-----NAYAFLTAYHTTHAEE 74 (692)
Q Consensus 13 ~~~~~~~a~~~~~--~~~~~~~~~~~~~~~w~~g~l~kg~~lchG-~a----------g-----~~~~~l~~~~~t~~~~ 74 (692)
++.+|+.|+.+|+ ||+|-+.+.++++.+|+..-=. +|.+.. +. + ..|+=..||+.|||++
T Consensus 195 ~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~fa~~~--~g~y~~~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~ 272 (510)
T PLN02266 195 TAAALAAASLVFRKSDPTYSKLLVRRAIRVFQFADKY--RGAYSNGLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPT 272 (510)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhC--CCCccCCCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHH
Confidence 5788999999996 6999999999999999985432 333322 10 1 1577789999999999
Q ss_pred HHHHHHHHHH
Q psy13779 75 QMYRALCFAN 84 (692)
Q Consensus 75 ~l~ra~~~a~ 84 (692)
|+..+.+...
T Consensus 273 Yl~~~~~~~~ 282 (510)
T PLN02266 273 YLNYIQVNGQ 282 (510)
T ss_pred HHHHHHHHHh
Confidence 9998876543
No 39
>PLN02308 endoglucanase
Probab=81.78 E-value=4.1 Score=46.07 Aligned_cols=73 Identities=18% Similarity=0.079 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHcC--CHHHHHHHHHhhHHHHHhcccccCC---cccccccc-----h------HHHHHHHHhhcCchhH
Q psy13779 12 GFISLLQVAYETYN--DKKYLDALLKSSDNVWHAGLLRKGY---SLCHGVAG-----N------AYAFLTAYHTTHAEEQ 75 (692)
Q Consensus 12 g~~~~~~~a~~~~~--~~~~~~~~~~~~~~~w~~g~l~kg~---~lchG~ag-----~------~~~~l~~~~~t~~~~~ 75 (692)
-++.+|+.|+.+|. ||+|-+.+.++++..|+...-.+|. ...-...+ + .|+=..||+.|||.+|
T Consensus 176 ~~AAAlA~as~vf~~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~~Y~~~s~~~DEl~WAAawLy~ATgd~~Y 255 (492)
T PLN02308 176 ETAAALAAASIVFRKRDPAYSRLLLDRAVRVFAFADKYRGAYSSSLHAAVCPFYCDFNGYQDELLWGAAWLHKASRRREY 255 (492)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccCCCcCCCCcccHHHHHHHHHHHHHhCCHHH
Confidence 45678999999997 8999999999999999875543321 11111111 2 7888899999999999
Q ss_pred HHHHHHHHH
Q psy13779 76 MYRALCFAN 84 (692)
Q Consensus 76 l~ra~~~a~ 84 (692)
+..+.+...
T Consensus 256 l~~~~~~~~ 264 (492)
T PLN02308 256 REYIVKNEV 264 (492)
T ss_pred HHHHHHHHH
Confidence 998766543
No 40
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=80.60 E-value=5.5 Score=43.01 Aligned_cols=77 Identities=14% Similarity=0.048 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhHHHHHhcccccCCcccccccc------------hHHHHHHH--HhhcCchhHHHH
Q psy13779 13 FISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAG------------NAYAFLTA--YHTTHAEEQMYR 78 (692)
Q Consensus 13 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~g~l~kg~~lchG~ag------------~~~~~l~~--~~~t~~~~~l~r 78 (692)
++.+++.|+. +++|+|++.|.++.+-+-+...=....|..|=+.. .+|+++.+ |+.|++++++..
T Consensus 26 ~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~tg~~~~~~~ 104 (346)
T PF07221_consen 26 QLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARATGDPEALEL 104 (346)
T ss_dssp HHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHCTT-TTHHHH
T ss_pred HHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHHhCChhHHHH
Confidence 4678899999 99999999999998876655542332355554432 34555554 568999999999
Q ss_pred HHHHHHHhhcCC
Q psy13779 79 ALCFANWVTGYN 90 (692)
Q Consensus 79 a~~~a~~~~~~~ 90 (692)
|.+..+++....
T Consensus 105 A~~~~~~l~~~~ 116 (346)
T PF07221_consen 105 AEQTLEFLERRF 116 (346)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999998886543
No 41
>PLN02420 endoglucanase
Probab=80.18 E-value=5.9 Score=45.14 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhhHHHHHhcccccC-Cccc----ccc----cc----hHHHHHHHHhhcCchhHHH
Q psy13779 13 FISLLQVAYETYN--DKKYLDALLKSSDNVWHAGLLRKG-YSLC----HGV----AG----NAYAFLTAYHTTHAEEQMY 77 (692)
Q Consensus 13 ~~~~~~~a~~~~~--~~~~~~~~~~~~~~~w~~g~l~kg-~~lc----hG~----ag----~~~~~l~~~~~t~~~~~l~ 77 (692)
++.+|+.|+.+|+ ||+|-+.++++++..|+...-.+| +.-+ +|- +| ..|+=..||+.|||++|+.
T Consensus 192 ~AAALA~AS~vfk~~D~~YA~~~L~~Ak~ly~fA~~~~g~y~~~~~~~~g~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~ 271 (525)
T PLN02420 192 TAAAMAAASIVFRSTNPHYSHLLLHHAQQLFEFGDKYRGKYDESLKVVKSYYASVSGYMDELLWGATWLYRATDNEHYMS 271 (525)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcCCccCCCCcccCCCCCCcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence 5677999999996 599999999999999998664433 1111 111 11 2567788999999999999
Q ss_pred HHHHHHH
Q psy13779 78 RALCFAN 84 (692)
Q Consensus 78 ra~~~a~ 84 (692)
.|.+.+.
T Consensus 272 ~a~~~~~ 278 (525)
T PLN02420 272 YVVDMAH 278 (525)
T ss_pred HHHHHHH
Confidence 8876654
No 42
>PLN02613 endoglucanase
Probab=79.73 E-value=6.4 Score=44.63 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhhHHHHHhcccccCCcccccc-------cc----hHHHHHHHHhhcCchhHHHHH
Q psy13779 13 FISLLQVAYETYN--DKKYLDALLKSSDNVWHAGLLRKGYSLCHGV-------AG----NAYAFLTAYHTTHAEEQMYRA 79 (692)
Q Consensus 13 ~~~~~~~a~~~~~--~~~~~~~~~~~~~~~w~~g~l~kg~~lchG~-------ag----~~~~~l~~~~~t~~~~~l~ra 79 (692)
++.+|+.|+.+|+ ||.|-+.+.++++.+|+..-=. +|..... +| -.|+=..||+.|||++|+..+
T Consensus 177 ~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~~a~~~--~g~y~~~~~~y~s~s~~~DEl~WAAawLy~aTGd~~Yl~~~ 254 (498)
T PLN02613 177 AAAALAAASLVFKDVDSSYSSKLLNHARSLFEFADKY--RGSYQASCPFYCSYSGYQDELLWAAAWLYKATGEKKYLNYV 254 (498)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhC--CCCcCCCCCcccccCccchHHHHHHHHHHHHhCCHHHHHHH
Confidence 6788999999996 5999999999999999986533 3333221 11 167888999999999999887
Q ss_pred HHH
Q psy13779 80 LCF 82 (692)
Q Consensus 80 ~~~ 82 (692)
...
T Consensus 255 ~~~ 257 (498)
T PLN02613 255 ISN 257 (498)
T ss_pred Hhc
Confidence 653
No 43
>PLN02993 lupeol synthase
Probab=74.08 E-value=69 Score=38.42 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=49.4
Q ss_pred cCcccchhHHHHHHHHcccC-C---hHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCCchHHHHHHHHHHH
Q psy13779 508 YGAAHGVTGILFTLLKSNVL-T---DKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYE 583 (692)
Q Consensus 508 ~G~~HG~sGI~~~Ll~~~~~-~---~~~~~~~i~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~wCHG~~Gi~~~l~~~~~ 583 (692)
.....+++-++-+|....+. . .+++.+.|+++++|+.+.+.++|.|..+.+ ++..+|+.-.+.+|..+.+
T Consensus 560 ~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wg------v~y~YgT~~aL~aL~a~G~ 633 (763)
T PLN02993 560 REYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWG------ICFIYATWFALGGLAAAGK 633 (763)
T ss_pred CCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccc------cccCcHHHHHHHHHHHcCC
Confidence 34555666677777665432 1 135678899999999999988998864322 3555677777777766555
Q ss_pred hcCC
Q psy13779 584 TYND 587 (692)
Q Consensus 584 ~~~d 587 (692)
...+
T Consensus 634 ~~~~ 637 (763)
T PLN02993 634 TYND 637 (763)
T ss_pred CCCC
Confidence 4444
No 44
>PLN02171 endoglucanase
Probab=71.46 E-value=14 Score=43.17 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhhHHHHHhcccccCCccccc-----------ccc----hHHHHHHHHhhcCchhH
Q psy13779 13 FISLLQVAYETYN--DKKYLDALLKSSDNVWHAGLLRKGYSLCHG-----------VAG----NAYAFLTAYHTTHAEEQ 75 (692)
Q Consensus 13 ~~~~~~~a~~~~~--~~~~~~~~~~~~~~~w~~g~l~kg~~lchG-----------~ag----~~~~~l~~~~~t~~~~~ 75 (692)
++.+|+.|+.+|+ ||.|-+.++++++.+|+..--.+| .+.. ..| ..|+=..||+.|||++|
T Consensus 181 ~AAAlAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g--~y~~~~~~~~~~Y~s~s~y~DEl~WAAawLy~ATgd~~Y 258 (629)
T PLN02171 181 TAAAMAAASIVFRRSNPGYANELLTHAKQLFDFADKYRG--KYDSSITVAQKYYRSVSGYGDELLWAAAWLYQATNNQYY 258 (629)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHhCCC--cccCCCcccCCccCCCCCccHHHHHHHHHHHHHhCCHHH
Confidence 5688899999995 699999999999999988654332 2221 111 34677789999999999
Q ss_pred HHHHHHHHHH
Q psy13779 76 MYRALCFANW 85 (692)
Q Consensus 76 l~ra~~~a~~ 85 (692)
+..+...+..
T Consensus 259 l~~~~~~~~~ 268 (629)
T PLN02171 259 LDYLGNNGDA 268 (629)
T ss_pred HHHHHHHHHh
Confidence 9988776653
No 45
>PLN03009 cellulase
Probab=71.35 E-value=10 Score=43.00 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHcC--CHHHHHHHHHhhHHHHHhcccccCC-cccc----cc-------cc----hHHHHHHHHhhcCch
Q psy13779 12 GFISLLQVAYETYN--DKKYLDALLKSSDNVWHAGLLRKGY-SLCH----GV-------AG----NAYAFLTAYHTTHAE 73 (692)
Q Consensus 12 g~~~~~~~a~~~~~--~~~~~~~~~~~~~~~w~~g~l~kg~-~lch----G~-------ag----~~~~~l~~~~~t~~~ 73 (692)
.++.+|+.|+.+|+ ||+|-+.+.++++..|+...-.+|. .-+- |. .| -.|+=..||+.|||.
T Consensus 177 ~~AAalA~as~vfk~~D~~YA~~ll~~Ak~ly~~a~~~~g~y~~~~~~~~g~~~~Y~~~s~~~DE~~WAAawLy~aTgd~ 256 (495)
T PLN03009 177 ETAAALAASSMAFRSSDPGYSETLLRNAIKTFQFADMYRGAYSDNDDIKDGVCPFYCDFDGYQDELLWGAAWLRRASGDD 256 (495)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHcCCCccCCccccCccccCcCCcccccHHHHHHHHHHHHHhCCH
Confidence 46788999999996 7999999999999999986543321 1110 11 00 147888899999999
Q ss_pred hHHHHHHHH
Q psy13779 74 EQMYRALCF 82 (692)
Q Consensus 74 ~~l~ra~~~ 82 (692)
+|+..+...
T Consensus 257 ~Yl~~~~~~ 265 (495)
T PLN03009 257 SYLNYIENN 265 (495)
T ss_pred HHHHHHHHh
Confidence 999887653
No 46
>PLN02909 Endoglucanase
Probab=71.18 E-value=12 Score=42.28 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhhHHHHHhcccccCCcccccc-------cc----hHHHHHHHHhhcCchhHHHHH
Q psy13779 13 FISLLQVAYETYN--DKKYLDALLKSSDNVWHAGLLRKGYSLCHGV-------AG----NAYAFLTAYHTTHAEEQMYRA 79 (692)
Q Consensus 13 ~~~~~~~a~~~~~--~~~~~~~~~~~~~~~w~~g~l~kg~~lchG~-------ag----~~~~~l~~~~~t~~~~~l~ra 79 (692)
++.+|+.|+.+|+ ||+|-+.++++++.+|+...=.+| .-.+. +| ..|+=..||+.|||.+|+..+
T Consensus 185 ~AAAlA~as~vfk~~D~~yA~~lL~~Ak~~y~fA~~~~g--~y~~~~~~y~s~s~y~DEl~WAAawLy~aTgd~~Yl~~~ 262 (486)
T PLN02909 185 TAAAMAASSMVFRHVDHKYSRRLLNKAKLLFKFAKAHKG--TYDGECPFYCSYSGYNDELLWAATWLYKATKKQMYLKYI 262 (486)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCC--CcCCCCCccccCCCcchHHHHHHHHHHHHhCCHHHHHHH
Confidence 4678899999996 699999999999999988654443 22221 11 247778899999999999866
Q ss_pred HH
Q psy13779 80 LC 81 (692)
Q Consensus 80 ~~ 81 (692)
..
T Consensus 263 ~~ 264 (486)
T PLN02909 263 KH 264 (486)
T ss_pred Hh
Confidence 54
No 47
>PLN02340 endoglucanase
Probab=70.44 E-value=14 Score=43.05 Aligned_cols=71 Identities=18% Similarity=0.126 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHcC--CHHHHHHHHHhhHHHHHhcccccCCccccc---ccc-----------hHHHHHHHHhhcCchhH
Q psy13779 12 GFISLLQVAYETYN--DKKYLDALLKSSDNVWHAGLLRKGYSLCHG---VAG-----------NAYAFLTAYHTTHAEEQ 75 (692)
Q Consensus 12 g~~~~~~~a~~~~~--~~~~~~~~~~~~~~~w~~g~l~kg~~lchG---~ag-----------~~~~~l~~~~~t~~~~~ 75 (692)
.++.+|+.|+.+|+ ||.|-+.++++++.+|+..-=.+ |.+.. .+. ..|+=..||+.|||.+|
T Consensus 180 e~AAAlAaas~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~--g~y~~s~~~a~~~Y~ss~~~DEl~WAAawLy~ATgd~~Y 257 (614)
T PLN02340 180 ETAAALAAASKAFKPYNSSYSDLLLVHAKQLFSFADKFR--GLYDDSIQNAKKFYTSSGYSDELLWAAAWLYRATGDEYY 257 (614)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCC--CCccCCCCccccCCCCCCcchHHHHHHHHHHHHhCCHHH
Confidence 36788999999996 69999999999999998854333 33321 111 25788889999999999
Q ss_pred HHHHHHHHH
Q psy13779 76 MYRALCFAN 84 (692)
Q Consensus 76 l~ra~~~a~ 84 (692)
+..|...+.
T Consensus 258 l~~~~~~~~ 266 (614)
T PLN02340 258 LKYVVDNAV 266 (614)
T ss_pred HHHHHHHHH
Confidence 998887654
No 48
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=68.70 E-value=17 Score=41.61 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhHHHHHh-----cccc------cC----C---cccccccchH---HHHHHHHhhcCc
Q psy13779 14 ISLLQVAYETYNDKKYLDALLKSSDNVWHA-----GLLR------KG----Y---SLCHGVAGNA---YAFLTAYHTTHA 72 (692)
Q Consensus 14 ~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~-----g~l~------kg----~---~lchG~ag~~---~~~l~~~~~t~~ 72 (692)
+--|.-||...+++.|++-|+..|+.+-.. |+.. +| . +-|-.+|.-| .=|..|.++|||
T Consensus 161 LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd 240 (522)
T PTZ00470 161 LGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGD 240 (522)
T ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCC
Confidence 445778999999999999999999976432 4331 11 1 2232233332 337779999999
Q ss_pred hhHHHHHHHHHHHhhc
Q psy13779 73 EEQMYRALCFANWVTG 88 (692)
Q Consensus 73 ~~~l~ra~~~a~~~~~ 88 (692)
++|...|.+..+.+..
T Consensus 241 ~kY~~~a~~i~~~l~~ 256 (522)
T PTZ00470 241 PKYAEYVDKVMDALFS 256 (522)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999888754
No 49
>KOG2430|consensus
Probab=65.27 E-value=15 Score=38.56 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=61.5
Q ss_pred ccCchhHHHHHHHHHH-HcCCHHHHHHHHHhhHHHHHh----------------ccc-ccCCcccccccchHHHHHHHHh
Q psy13779 7 CHGSPGFISLLQVAYE-TYNDKKYLDALLKSSDNVWHA----------------GLL-RKGYSLCHGVAGNAYAFLTAYH 68 (692)
Q Consensus 7 chgapg~~~~~~~a~~-~~~~~~~~~~~~~~~~~~w~~----------------g~l-~kg~~lchG~ag~~~~~l~~~~ 68 (692)
|-...|.+++=-.|.. ..++|-|.+-|++|.+-.|++ |-| +|..|+--||-.-=--+|..|-
T Consensus 183 ctac~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~lkayi 262 (587)
T KOG2430|consen 183 CTACAGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLLKAYI 262 (587)
T ss_pred hhhccchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHHHHhh
Confidence 5555566555444544 458999999999999999986 334 7888888888765556778999
Q ss_pred hcCchhHHHHHHHHHHHhhcC
Q psy13779 69 TTHAEEQMYRALCFANWVTGY 89 (692)
Q Consensus 69 ~t~~~~~l~ra~~~a~~~~~~ 89 (692)
+.||+.||+|--+-.+-+..|
T Consensus 263 llgddsfldrfn~hydai~ry 283 (587)
T KOG2430|consen 263 LLGDDSFLDRFNKHYDAIKRY 283 (587)
T ss_pred eeccHHHHHHHHHHHHHHHHH
Confidence 999999999976555545444
No 50
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=63.00 E-value=8.2 Score=44.05 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=34.8
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCcc
Q psy13779 62 AFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSL 103 (692)
Q Consensus 62 ~~l~~~~~t~~~~~l~ra~~~a~~~~~~~~~~~~~~~~p~sl 103 (692)
.||+.|.+|+|+.+|..|..+|+.+...++...++|-....+
T Consensus 163 GLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl 204 (522)
T PTZ00470 163 GLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINL 204 (522)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeec
Confidence 479999999999999999999999998887666776444333
No 51
>PLN02175 endoglucanase
Probab=62.50 E-value=23 Score=40.11 Aligned_cols=69 Identities=20% Similarity=0.210 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhhHHHHHhcccccC-Cc--cccc-------ccc----hHHHHHHHHhhcCchhHH
Q psy13779 13 FISLLQVAYETYN--DKKYLDALLKSSDNVWHAGLLRKG-YS--LCHG-------VAG----NAYAFLTAYHTTHAEEQM 76 (692)
Q Consensus 13 ~~~~~~~a~~~~~--~~~~~~~~~~~~~~~w~~g~l~kg-~~--lchG-------~ag----~~~~~l~~~~~t~~~~~l 76 (692)
++.+|+.|+.+|+ ||.|-+.+.++++.+|+...=.+| ++ ++-+ .+| ..|+=..||+.|||++|+
T Consensus 174 ~AAALAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl 253 (484)
T PLN02175 174 TAAALAAASMVFRKVDSKYSRLLLATAKKVMQFAIQYRGAYSDSLSSSVCPFYCSYSGYKDELMWGASWLLRATNDPYYA 253 (484)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhCCCCcccCccccccCccccCCCccHHHHHHHHHHHHHhCCHHHH
Confidence 7788999999996 699999999999999887443332 11 1100 011 246778899999999999
Q ss_pred HHHHH
Q psy13779 77 YRALC 81 (692)
Q Consensus 77 ~ra~~ 81 (692)
..+..
T Consensus 254 ~~~~~ 258 (484)
T PLN02175 254 NFIKS 258 (484)
T ss_pred HHHHH
Confidence 76654
No 52
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=62.43 E-value=35 Score=35.86 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=83.1
Q ss_pred chhHHHHHHHhhcccCchh-HhhhHHHHHHHHhhccCCCCCCCCCCCCCCCc--ccccccC-chhHHHHHHHHHhhcCcH
Q psy13779 402 GVTGILFTLLKSNVLTDKE-RDTLVKPTLDALLHETFPSGNLKSSHGSDSDR--LVQWCHG-SPGFTSLLQVAYETYNDK 477 (692)
Q Consensus 402 G~aGIl~~Ll~l~~~~~~~-~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~--~~d~~~G-~aGii~~Ll~ly~~~~~~ 477 (692)
....-+..|++.+..++++ +++.+.+.++++++.++++|-||......... .+-|-.+ ..+++.+|..+++..++-
T Consensus 40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~ 119 (289)
T PF09492_consen 40 ATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDF 119 (289)
T ss_dssp TTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence 3456677888888887655 88899999999999999999998654332221 1112222 366777777777776654
Q ss_pred ---------HHHHHHHhcc----------C-CCcccccCcccc----cc-cCCCccCcccc-hhHHHHHHHHcccCChHH
Q psy13779 478 ---------KYLDALLKSS----------D-NFVSWSFGECEY----EW-HDKNYYGAAHG-VTGILFTLLKSNVLTDKE 531 (692)
Q Consensus 478 ---------~~l~~~~~~~----------~-~~~~w~~~~~~~----~~-~~~~~~G~~HG-~sGI~~~Ll~~~~~~~~~ 531 (692)
++.+.+.+.. + ....|-...... .+ ...-..++|-+ ++||+.+|+.+...+ ++
T Consensus 120 ~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps-~~ 198 (289)
T PF09492_consen 120 AFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS-PE 198 (289)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS---HH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC-HH
Confidence 2332222211 1 112333211110 01 12234677766 578888888887666 67
Q ss_pred HHHHHHHHHHHHHHhcCC
Q psy13779 532 RDTLVKPTLDALLDETFP 549 (692)
Q Consensus 532 ~~~~i~~~l~~l~~~~~~ 549 (692)
+.+.|+.+++|+.+...+
T Consensus 199 v~~aI~~AvaWl~~~ki~ 216 (289)
T PF09492_consen 199 VLAAIEAAVAWLESVKIP 216 (289)
T ss_dssp HHHHHHHHHHHHCCTSEE
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 889999999999886554
No 53
>PLN03012 Camelliol C synthase
Probab=61.92 E-value=87 Score=37.55 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCCchHHHHHHHHHHHhcCC-HHHHHHH
Q psy13779 531 ERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYND-KKYLDAL 594 (692)
Q Consensus 531 ~~~~~i~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~wCHG~~Gi~~~l~~~~~~~~d-~~~~~~a 594 (692)
++.+.|+++++|+++.+.++|.|..+.+ ++..+|+.-.+.+|..+.+...+ +.+++.+
T Consensus 587 ~i~~~i~rAv~~L~~~Q~~DGsW~G~Wg------v~y~YgT~~aL~aL~a~g~~~~~~~~Irrav 645 (759)
T PLN03012 587 EINAFIKKAAEYIENIQMLDGSWYGNWG------ICFTYGTWFALAGLAAAGKTFNDCEAIRKGV 645 (759)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCCccccc------ccCCcHHHHHHHHHHHhCccCCCcHHHHHHH
Confidence 4677899999999999999998875433 34556777777777766665555 4333333
No 54
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=61.13 E-value=16 Score=41.17 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHhhHHH---HHh--cccccCC-------------ccc-ccccchHHHHHHHHhhcC
Q psy13779 13 FISLLQVAYETY--NDKKYLDALLKSSDNV---WHA--GLLRKGY-------------SLC-HGVAGNAYAFLTAYHTTH 71 (692)
Q Consensus 13 ~~~~~~~a~~~~--~~~~~~~~~~~~~~~~---w~~--g~l~kg~-------------~lc-hG~ag~~~~~l~~~~~t~ 71 (692)
++-.|.-||... +|+.+++.|++.|+.+ |.. |+..... ..| +.++....=|.+|.++||
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTg 161 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTG 161 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhh
Confidence 455677899998 9999999999999975 332 3322111 123 666667778999999999
Q ss_pred chhHHHHHHHHHHHhhcC
Q psy13779 72 AEEQMYRALCFANWVTGY 89 (692)
Q Consensus 72 ~~~~l~ra~~~a~~~~~~ 89 (692)
|++|...|.+....+...
T Consensus 162 d~kY~~~a~~~~~~l~~~ 179 (452)
T PF01532_consen 162 DPKYFDAADRIYDALWRS 179 (452)
T ss_dssp -THHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHh
Confidence 999999999999988763
No 55
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=58.71 E-value=1.1e+02 Score=30.16 Aligned_cols=136 Identities=13% Similarity=-0.032 Sum_probs=75.1
Q ss_pred CccCcccchh-HHHHH-HHHcccCChH-HHHHHHHHHHHHHHHhcCCCC---------CCCCCCCCCCCccccccCCchH
Q psy13779 506 NYYGAAHGVT-GILFT-LLKSNVLTDK-ERDTLVKPTLDALLDETFPSG---------NLKSSHGSDSDRLVQWCHGSPG 573 (692)
Q Consensus 506 ~~~G~~HG~s-GI~~~-Ll~~~~~~~~-~~~~~i~~~l~~l~~~~~~~g---------~w~~~~~~~~~~~~~wCHG~~G 573 (692)
...||--+.+ |.+++ |++++.+|++ ++++.++++++....-..+.| .|-...+. .....--+|-.=
T Consensus 22 l~~gW~SamaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~~~~wyeEYp~--~p~s~VLNGfiy 99 (189)
T PF06662_consen 22 LSPGWYSAMAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVPVEEGGVLATFKNKYPWYEEYPT--TPPSYVLNGFIY 99 (189)
T ss_pred CCCCcHhHHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChHhhCCeeEEecCCcEeEeecCC--CCCCEEeehHHH
Confidence 3455555543 34443 7788999886 799999999887765432222 23221111 112234444444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHHHH------cCCC----------CCCCccc--cchHHHHHHHHHHHHhcCCHH
Q psy13779 574 FISLLQVAYETYNDKKYLDALLKSSDNVWH------AGLL----------RKGYSLC--HGVSGNAYAFLTAYHTTHAEE 635 (692)
Q Consensus 574 i~~~l~~~~~~~~d~~~~~~a~~~~~~i~~------~g~~----------~~~~gLC--hG~aGi~~~ll~l~~~t~d~~ 635 (692)
.+..|......+++++..+.-.+.++.+.+ .|-. ...|.+| +=-.--+..|..++..|+|+.
T Consensus 100 sL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~qL~~L~~it~d~~ 179 (189)
T PF06662_consen 100 SLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTLGNAPNIARWDYHRLHIQQLKWLYSITGDPI 179 (189)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCchhhccccccccCcCcCcchHHHHHHHHHHHHHHhcCCHH
Confidence 444455555566777665555544433221 2211 0123333 111234567888999999999
Q ss_pred HHHHHHHH
Q psy13779 636 QMYRALCF 643 (692)
Q Consensus 636 ~l~~a~~~ 643 (692)
+.+.+.++
T Consensus 180 f~~~a~rW 187 (189)
T PF06662_consen 180 FKEYAERW 187 (189)
T ss_pred HHHHHHHh
Confidence 99998876
No 56
>PLN02993 lupeol synthase
Probab=56.84 E-value=1.3e+02 Score=36.27 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=53.9
Q ss_pred ccccCchHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcccccccCCccchhHHHHHH
Q psy13779 334 EILYGRAGYLYSLLFVNKHIKSV---NIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTL 410 (692)
Q Consensus 334 dll~G~AG~l~~L~~l~~~~~d~---~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~~~lG~ahG~aGIl~~L 410 (692)
+..++.+-++-+|..+.+..++. .+ +..+++.++.|.+. .+.+.+ |.+...+....|.+..+-+|
T Consensus 561 ~~~dcT~~vl~aL~~~~~~~p~~r~~ei-~~~i~rAv~yL~~~----Q~~DGS-------W~G~Wgv~y~YgT~~aL~aL 628 (763)
T PLN02993 561 EYVECTSAVIQALVLFKQLYPDHRTKEI-IKSIEKAVQFIESK----QTPDGS-------WYGNWGICFIYATWFALGGL 628 (763)
T ss_pred CCcCHHHHHHHHHHHhcccCcchhhhhH-HHHHHHHHHHHHHh----cCCCCC-------cccccccccCcHHHHHHHHH
Confidence 44567777888888776533321 11 23445555555542 111222 44333344445777777788
Q ss_pred HhhcccCchhHhhhHHHHHHHHhhccCCCCCCC
Q psy13779 411 LKSNVLTDKERDTLVKPTLDALLHETFPSGNLK 443 (692)
Q Consensus 411 l~l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~ 443 (692)
...++...+ .+.+++.++++.+.+.++|-|-
T Consensus 629 ~a~G~~~~~--~~~IrrAv~fLls~Q~~DGGWG 659 (763)
T PLN02993 629 AAAGKTYND--CLAMRKGVHFLLTIQRDDGGWG 659 (763)
T ss_pred HHcCCCCCC--cHHHHHHHHHHHHhcCCCCCcC
Confidence 766553222 2468889999988776666553
No 57
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=56.47 E-value=13 Score=36.44 Aligned_cols=27 Identities=44% Similarity=0.605 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhHHH
Q psy13779 14 ISLLQVAYETYNDKKYLDALLKSSDNV 40 (692)
Q Consensus 14 ~~~~~~a~~~~~~~~~~~~~~~~~~~~ 40 (692)
+-+|++||++++|++|+++|.+|.+..
T Consensus 36 ~s~l~RAy~~t~d~~Yl~aA~~al~~f 62 (189)
T PF06662_consen 36 ISVLARAYQLTGDEKYLDAAKKALNSF 62 (189)
T ss_pred HHHHHHHHHhHCCHHHHHHHHHHHHHh
Confidence 456789999999999999999987643
No 58
>KOG2431|consensus
Probab=53.08 E-value=12 Score=40.68 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=35.1
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCccccch
Q psy13779 62 AFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGK 107 (692)
Q Consensus 62 ~~l~~~~~t~~~~~l~ra~~~a~~~~~~~~~~~~~~~~p~sl~eG~ 107 (692)
.+|+.|+++|++.||..|..++..+++.++.+..+|-.---|-+|.
T Consensus 183 GLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~ 228 (546)
T KOG2431|consen 183 GLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGT 228 (546)
T ss_pred hhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCc
Confidence 3688999999999999999999999988865555554333344443
No 59
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=50.99 E-value=4.8e+02 Score=30.76 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy13779 530 KERDTLVKPTLDALLDETFPSGNLKS 555 (692)
Q Consensus 530 ~~~~~~i~~~l~~l~~~~~~~g~w~~ 555 (692)
+++.+.|+++++|+.+.+.++|.|..
T Consensus 456 ~~~~~~i~rAl~~L~~~Q~~DGsw~g 481 (621)
T TIGR01787 456 DEIRNVLERALEYLRREQRADGSWFG 481 (621)
T ss_pred HhHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 45668999999999999888888864
No 60
>KOG2244|consensus
Probab=49.42 E-value=37 Score=38.22 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHhhHHHHHh------cccccCCcccccccch----------------HHHHH-----
Q psy13779 13 FISLLQVAYETYN-DKKYLDALLKSSDNVWHA------GLLRKGYSLCHGVAGN----------------AYAFL----- 64 (692)
Q Consensus 13 ~~~~~~~a~~~~~-~~~~~~~~~~~~~~~w~~------g~l~kg~~lchG~ag~----------------~~~~l----- 64 (692)
++--|++|++++. +|+|.+.|..+++-+=+. ++|.+ |-|-+.|+. -||||
T Consensus 510 viSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR--~scY~ga~g~ve~~n~~~~~~~FldDYAFlI~gLL 587 (786)
T KOG2244|consen 510 VISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIR--GSCYDGASGRVEHSNRPSKAPAFLDDYAFLISGLL 587 (786)
T ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheee--cccccCCCcceeccCCccccchhhhhHHHHHHHHH
Confidence 4567899999986 469999999988755332 56655 345554432 26665
Q ss_pred HHHhhcCchhHHHHHHHHHHHh
Q psy13779 65 TAYHTTHAEEQMYRALCFANWV 86 (692)
Q Consensus 65 ~~~~~t~~~~~l~ra~~~a~~~ 86 (692)
-||..+|+.+||..|.++-+.+
T Consensus 588 DlYea~~~~e~LkwA~~LQdtq 609 (786)
T KOG2244|consen 588 DLYEAGGGIEWLKWAIKLQDTQ 609 (786)
T ss_pred HHHHccCchHHHHHHHHHHHHH
Confidence 4899999999999999987754
No 61
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=47.79 E-value=67 Score=35.14 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhHHHHHhccccc-C--Ccccccccc----hH------H----HHHHHHhhcCchhH
Q psy13779 13 FISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRK-G--YSLCHGVAG----NA------Y----AFLTAYHTTHAEEQ 75 (692)
Q Consensus 13 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~g~l~k-g--~~lchG~ag----~~------~----~~l~~~~~t~~~~~ 75 (692)
|+++|..|.+.++++.|.+.|..-...|+++-.... | +-|==|-.| .. | +|=.+++.++|..|
T Consensus 121 IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~~~~~~~~NPSY~~p~~~~~fa~~~~~~~W 200 (376)
T PRK11097 121 IAYSLLEAGRLWKEPRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFADDGSWRLNPSYLPPQLLRRFARFLPGGPW 200 (376)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcccccCCCceeeccccccccCCCCCeECcccccHHHHHHHHHhcCCchH
Confidence 689999999999999999999999999999755432 1 112222222 11 2 23335677888888
Q ss_pred HHHHHHHHHHhhc
Q psy13779 76 MYRALCFANWVTG 88 (692)
Q Consensus 76 l~ra~~~a~~~~~ 88 (692)
..-+......+..
T Consensus 201 ~~l~~~~~~lL~~ 213 (376)
T PRK11097 201 AALAATNARLLLE 213 (376)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777666543
No 62
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=47.68 E-value=13 Score=41.80 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=29.7
Q ss_pred HHHHHHhhc--CchhHHHHHHHHHHHhhcCCCCCCCCCC
Q psy13779 62 AFLTAYHTT--HAEEQMYRALCFANWVTGYNKHEDTTPD 98 (692)
Q Consensus 62 ~~l~~~~~t--~~~~~l~ra~~~a~~~~~~~~~~~~~~~ 98 (692)
.+|+.|.+| +|+.+|.+|.++|+.+.+.++...++|-
T Consensus 85 gLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~ 123 (452)
T PF01532_consen 85 GLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPY 123 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCcccc
Confidence 578999999 9999999999999999887765545543
No 63
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=44.99 E-value=59 Score=36.45 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhhHHHHHhcccc----cCCcccccccc-----hHHHHHHHHhhcCchhHHHHHHHH
Q psy13779 12 GFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLR----KGYSLCHGVAG-----NAYAFLTAYHTTHAEEQMYRALCF 82 (692)
Q Consensus 12 g~~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~g~l~----kg~~lchG~ag-----~~~~~l~~~~~t~~~~~l~ra~~~ 82 (692)
-++.+++.|+.+-.|++-.+.++..+. -|--|-|- +++.+ -+... ..|+.|.||+.|++++|+.-|.+.
T Consensus 388 ~yll~~vra~~~s~D~~Lw~~~~~m~~-~~gLGdig~~~~~~~~~-~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~ 465 (557)
T PF06917_consen 388 DYLLPYVRAYRLSRDPELWDLARTMAH-HFGLGDIGNAAGKEPRV-NMQTDNASPYLLFALLELYQATQDARYLELADQV 465 (557)
T ss_dssp HHHHHHHHHHHHS--HHHHHHHHHHHH-HTT-EE-TTBTTBS-EE--TT-----HHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred hHhHHHHHHHHcCCCHHHHHHHHHHHh-hcCcccccCcccccccc-ccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 356778889999888887776665443 22223331 22222 22223 357888899999999999999999
Q ss_pred HHHhhcCC-CC--CCCCCCCCCccccc
Q psy13779 83 ANWVTGYN-KH--EDTTPDRPYSLYEG 106 (692)
Q Consensus 83 a~~~~~~~-~~--~~~~~~~p~sl~eG 106 (692)
++-+.... .. ..+.|++.|-.+.-
T Consensus 466 g~~l~~~~~~~GlF~~~~~h~y~r~Dd 492 (557)
T PF06917_consen 466 GENLFEQHFHRGLFVASPRHRYARLDD 492 (557)
T ss_dssp HHHHHHHHEETTEE-SSTTBSSEETT-
T ss_pred HHHHHHHHccCceecCChhhceeccCC
Confidence 99886632 22 13445554444433
No 64
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=44.46 E-value=6e+02 Score=30.00 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=27.1
Q ss_pred HHHHHHHHcccCCh---HHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy13779 516 GILFTLLKSNVLTD---KERDTLVKPTLDALLDETFPSGNLKS 555 (692)
Q Consensus 516 GI~~~Ll~~~~~~~---~~~~~~i~~~l~~l~~~~~~~g~w~~ 555 (692)
-++.+|.......+ .++.+.++++++|+.+.+.++|.|..
T Consensus 455 ~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g 497 (634)
T cd02892 455 SVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYG 497 (634)
T ss_pred HHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccc
Confidence 44455555433322 24677899999999999888888853
No 65
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=43.97 E-value=20 Score=31.24 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCCCCC
Q psy13779 536 VKPTLDALLDETFPSGNLKS 555 (692)
Q Consensus 536 i~~~l~~l~~~~~~~g~w~~ 555 (692)
|+++++++++.+.++|.|+.
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~ 20 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGY 20 (109)
T ss_dssp --------------------
T ss_pred Cccccccccccccccccccc
Confidence 57889999999988999974
No 66
>KOG2429|consensus
Probab=43.39 E-value=46 Score=37.69 Aligned_cols=182 Identities=15% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHhhcCCCC------------------CCCCCCCCCccccchHHHHHHHHhhcCCCccc
Q psy13779 63 FLTAYHTTHAEEQMYRALCFANWVTGYNKH------------------EDTTPDRPYSLYEGKVGVAFFLLDILKPTNAK 124 (692)
Q Consensus 63 ~l~~~~~t~~~~~l~ra~~~a~~~~~~~~~------------------~~~~~~~p~sl~eG~~G~~~~l~~~~~~~~~~ 124 (692)
|-.|-|+|||++|-.-|++-.+-+-+.... ...+...--|+||=+.=...++-|= ..-..
T Consensus 205 Fg~LSrLTGD~~fE~vA~~A~~~lW~~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfgd~--e~lem 282 (622)
T KOG2429|consen 205 FGTLSRLTGDPKFEKVARRALDALWSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFGDP--ELLEM 282 (622)
T ss_pred hhhhHHhhCCcHHHHHHHHHHHHHHhhcCCCCcccceeeccccceeccccccccchHHHHHHHHHHheecCCH--HHHHH
Q ss_pred ccccCCCccHHHHHHHHhhhcccCcchhhhhhhhhhhhhhhhhcccccccccCCCCCCC-CCCCCCCccccccccccccc
Q psy13779 125 WNQEYPNINIENLIAHLMRERTDYDTDYKSLMLFHSYEIKTARSVKMETKHSSRHHQNK-YKYGEGEKSKLFTVENKEKI 203 (692)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~n~-~~~~~~~~~~~~~~~~~~~~ 203 (692)
|.++|- .|-+-|| | --+-.+..|++...-+| |+.-+.-=...+++-|.
T Consensus 283 f~ea~~------ai~~y~r--------------------~--~~wY~~V~m~~G~v~~p~~dSLqAfwpGlqvLaGD--- 331 (622)
T KOG2429|consen 283 FNEAYE------AIQKYTR--------------------K--GPWYVNVNMDSGSVSLPWFDSLQAFWPGLQVLAGD--- 331 (622)
T ss_pred HHHHHH------HHHHHhh--------------------c--CCeEEEEecCCCceehHHHhhHHhhccchhhhhcc---
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccccccH-----------HHHHHHHHHHhccCChHHHHHHHHHH
Q psy13779 204 VLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTS-----------GQAMFYYIYYQRTHDSKYLDKAQKLI 272 (692)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sLY~G~a-----------GIal~l~~L~~~t~~~~yl~~A~~~i 272 (692)
+..+++ ....--.+|+.=++-|....++++.. =.+=--++||+.|+|+-|++....++
T Consensus 332 ---------vd~A~~--~h~~y~~vwkkyG~lPEryN~~~~~~~~~~~~YPLRPElvEStyyLYrATkdp~yL~vG~~~l 400 (622)
T KOG2429|consen 332 ---------VDDAIR--THLMYFSVWKKYGFLPERYNLATQEPPPKREGYPLRPELVESTYYLYRATKDPFYLHVGEDML 400 (622)
T ss_pred ---------hHHHHH--HHHHHHHHHHHcCCCcccccccCCCCCCCcccCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q ss_pred HHHHHhhccCCcccccCChHH
Q psy13779 273 ERSLKNLKNRRFSFLNGDAGP 293 (692)
Q Consensus 273 ~~~l~~~~~~~~s~~~G~aGi 293 (692)
+.+-...+.+ ||.|+|
T Consensus 401 ~sLe~~~k~~-----CGfAti 416 (622)
T KOG2429|consen 401 KSLEKYTKVK-----CGFATI 416 (622)
T ss_pred HHHHHhccCC-----ccceee
No 67
>PLN03012 Camelliol C synthase
Probab=43.14 E-value=2.7e+02 Score=33.50 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcccccccCCccchhHHHHHHHhhcc
Q psy13779 339 RAGYLYSLLFVNKHIKSV---NIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNV 415 (692)
Q Consensus 339 ~AG~l~~L~~l~~~~~d~---~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~~~lG~ahG~aGIl~~Ll~l~~ 415 (692)
.+-++-+|..+.+..++. .+ +..+.+.++.|.+.- +.+.+ |.+..-+-+..|.+-.+-+|....+
T Consensus 566 Ta~~l~aL~~f~~~~~~~r~~~i-~~~i~rAv~~L~~~Q----~~DGs-------W~G~Wgv~y~YgT~~aL~aL~a~g~ 633 (759)
T PLN03012 566 TSSAIQALILFKQLYPDHRTEEI-NAFIKKAAEYIENIQ----MLDGS-------WYGNWGICFTYGTWFALAGLAAAGK 633 (759)
T ss_pred HHHHHHHHHHHhhhCcccchhhh-HHHHHHHHHHHHHhc----CCCCC-------CcccccccCCcHHHHHHHHHHHhCc
Confidence 555667777766654321 11 234555555555431 11222 4443333334577777777776654
Q ss_pred cCchhHhhhHHHHHHHHhhccCCCCCCCCC
Q psy13779 416 LTDKERDTLVKPTLDALLHETFPSGNLKSS 445 (692)
Q Consensus 416 ~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~ 445 (692)
...+ .+.+++.+++|.+.+.++|-|--+
T Consensus 634 ~~~~--~~~Irrav~fLls~Q~~DGGWGEs 661 (759)
T PLN03012 634 TFND--CEAIRKGVHFLLAAQKDNGGWGES 661 (759)
T ss_pred cCCC--cHHHHHHHHHHHHhcCCCCCcCCC
Confidence 3222 257899999999988888877543
No 68
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=41.96 E-value=67 Score=33.13 Aligned_cols=91 Identities=21% Similarity=0.227 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhHHHHHh-----ccccc-------C-------CcccccccchHHHHHHHHh-hcCchhHHHHHHHHHHHh
Q psy13779 27 KKYLDALLKSSDNVWHA-----GLLRK-------G-------YSLCHGVAGNAYAFLTAYH-TTHAEEQMYRALCFANWV 86 (692)
Q Consensus 27 ~~~~~~~~~~~~~~w~~-----g~l~k-------g-------~~lchG~ag~~~~~l~~~~-~t~~~~~l~ra~~~a~~~ 86 (692)
-++++-|.+..|=+-+. |+... | +.-|.||+=..-+=|.||+ .+...+|+.++.+.+.-.
T Consensus 165 ~krL~~AMK~~dWi~~~Lid~DGlV~DGi~~ledGt~lvr~~~tYcQGV~IGle~~L~Lr~~~a~~A~Y~a~~h~~vaav 244 (377)
T COG4833 165 GKRLKRAMKMADWIDRTLIDPDGLVFDGIKALEDGTSLVRAQYTYCQGVVIGLETELALRTGPAARARYCARVHRLVAAV 244 (377)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhhccCchhheeeccccceeEeechhhhhhhcCchHHHHHHHHHHHHHHHH
Confidence 46888888877633221 33321 2 3459998866777889999 788999999999998765
Q ss_pred hcCCCC----CCCCCCCCCccccchHHHHHHHHhhcC
Q psy13779 87 TGYNKH----EDTTPDRPYSLYEGKVGVAFFLLDILK 119 (692)
Q Consensus 87 ~~~~~~----~~~~~~~p~sl~eG~~G~~~~l~~~~~ 119 (692)
.....+ +-...+.--.||.|+ ++=+|+|+..
T Consensus 245 ~~~mT~~Gv~~~e~ggGDgGLFKGI--~~RYlaDva~ 279 (377)
T COG4833 245 NEHMTPLGVLRGEAGGGDGGLFKGI--TARYLADVAT 279 (377)
T ss_pred HHhcCccceeecCCCCCccchhhhH--HHHHHHHHHH
Confidence 443322 123344555688887 4567888865
No 69
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=37.02 E-value=3.6e+02 Score=31.84 Aligned_cols=144 Identities=13% Similarity=0.032 Sum_probs=70.5
Q ss_pred cchhHHHHHHHhhcccCc----hhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHhhc--
Q psy13779 401 HGVTGILFTLLKSNVLTD----KERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETY-- 474 (692)
Q Consensus 401 hG~aGIl~~Ll~l~~~~~----~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~-- 474 (692)
...+-++.+|....+..+ .+....+++.++++.+.+.++|.|...+. ..+..|+ ..++..+....
T Consensus 451 d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg------~~~~Y~T---~~al~aL~~~G~~ 521 (634)
T TIGR03463 451 ECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWG------VCFTYGT---FHGVMGLRAAGAS 521 (634)
T ss_pred cHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCC------CCCcHHH---HHHHHHHHHcCCC
Confidence 345566666666544322 12245678889999888878887754332 1233343 44444333322
Q ss_pred CcHHHHHH----HHhccCCCcccccCcccccccCCCccCcccc-hhHHHHHHHHcccCChHHHHHHHHHHHHHHHHhcCC
Q psy13779 475 NDKKYLDA----LLKSSDNFVSWSFGECEYEWHDKNYYGAAHG-VTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFP 549 (692)
Q Consensus 475 ~~~~~l~~----~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG-~sGI~~~Ll~~~~~~~~~~~~~i~~~l~~l~~~~~~ 549 (692)
.++..++. +.+..+...+|...-... ....+.+-.++ ..+.++++..+...... -.+.++++++++.+.+.+
T Consensus 522 ~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~--~~~~y~~~~~S~~~~TA~Al~aL~~~g~~-~~~~i~rgi~~L~~~Q~~ 598 (634)
T TIGR03463 522 PDDMALQRAAAWLRSYQRADGGWGEVYESC--LQARYVEGKQSQAVMTSWALLALAEAGEG-GHDAVQRGVAWLRSRQQE 598 (634)
T ss_pred cCcHHHHHHHHHHHHccCCCCCccCccCcc--ccccccCCCCCcHHHHHHHHHHHHHcCCc-CCHHHHHHHHHHHHhCCC
Confidence 22233333 333322233453210000 00001111111 34455555544322111 124688999999999888
Q ss_pred CCCCCCC
Q psy13779 550 SGNLKSS 556 (692)
Q Consensus 550 ~g~w~~~ 556 (692)
+|.|+..
T Consensus 599 dG~W~~~ 605 (634)
T TIGR03463 599 DGRWPRE 605 (634)
T ss_pred CCCCCCC
Confidence 9999864
No 70
>KOG2430|consensus
Probab=36.91 E-value=1.4e+02 Score=31.64 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=61.9
Q ss_pred cCCchHHH-HHHHHHHHhcCCHHHHHHHHHHhHHHHHcCC-----------------CCCCCccccchHHHHHHHHHHHH
Q psy13779 568 CHGSPGFI-SLLQVAYETYNDKKYLDALLKSSDNVWHAGL-----------------LRKGYSLCHGVSGNAYAFLTAYH 629 (692)
Q Consensus 568 CHG~~Gi~-~~l~~~~~~~~d~~~~~~a~~~~~~i~~~g~-----------------~~~~~gLChG~aGi~~~ll~l~~ 629 (692)
|.--.|.+ +-+..+.+.++++-+.+.|.++.+..|+... .+++.|+=-|+-.-...+|..|-
T Consensus 183 ctac~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~lkayi 262 (587)
T KOG2430|consen 183 CTACAGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLLKAYI 262 (587)
T ss_pred hhhccchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHHHHhh
Confidence 33334433 3455667778999999999999998886321 14667888888888888999999
Q ss_pred hcCCHHHHHHHHHHHHHHHhcc
Q psy13779 630 TTHAEEQMYRALCFANWVTGYN 651 (692)
Q Consensus 630 ~t~d~~~l~~a~~~~~~l~~~~ 651 (692)
..+|+.|++|-.+-.+.+..+.
T Consensus 263 llgddsfldrfn~hydai~ryi 284 (587)
T KOG2430|consen 263 LLGDDSFLDRFNKHYDAIKRYI 284 (587)
T ss_pred eeccHHHHHHHHHHHHHHHHHh
Confidence 9999999999887655555444
No 71
>KOG1157|consensus
Probab=36.21 E-value=40 Score=36.63 Aligned_cols=96 Identities=24% Similarity=0.359 Sum_probs=56.0
Q ss_pred cccccchHHHHHHHHhhcC-chhHHH---HHHHHHHHhhc-----CC---CC----CCCCCCCCCccc--cchHHHH---
Q psy13779 53 CHGVAGNAYAFLTAYHTTH-AEEQMY---RALCFANWVTG-----YN---KH----EDTTPDRPYSLY--EGKVGVA--- 111 (692)
Q Consensus 53 chG~ag~~~~~l~~~~~t~-~~~~l~---ra~~~a~~~~~-----~~---~~----~~~~~~~p~sl~--eG~~G~~--- 111 (692)
-||-|--|+|-..+|+.-. ++.-+. .|.=.+.|... .. .. ..+.-|+|||+. -|..|.+
T Consensus 380 m~~~a~~g~aah~~yk~g~~~~~~~q~~~~~~~~~~~~~~~~~kd~ss~~~~~~k~~s~~~d~~f~~~~~~~~~~~~~~~ 459 (543)
T KOG1157|consen 380 MHLQAEFGFAAHWRYKEGKTSSFVLQMVEWARWVVTWHAEIMSKDISSIKSSSCKFPSHQEDCPFSYKPKNGQGGPVYVI 459 (543)
T ss_pred cccccccchhhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCccccCceeecCCCCCCCceEEE
Confidence 6899999999999998643 222222 22222222211 11 11 234458999982 3333332
Q ss_pred ---------------HHHHhhcC---CCccccc-ccCCCccHHHHHHHHhhhcccCcchhhhhh
Q psy13779 112 ---------------FFLLDILK---PTNAKWN-QEYPNINIENLIAHLMRERTDYDTDYKSLM 156 (692)
Q Consensus 112 ---------------~~l~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (692)
.-+.|++. |..++|. .+-| |+-||.|.+-|..||++|
T Consensus 460 ~ie~e~m~~~~~~e~~~~~d~~s~~~~~s~~~~~~~~~--------~e~lr~~~~~d~~~k~~m 515 (543)
T KOG1157|consen 460 VIENEKMGVQEFPEMSTVSDLLSRAGPGSSRWSMYQIP--------AEELRPRLNQDLKYKLKM 515 (543)
T ss_pred EeeccccCCCCCchhhhHHHhhccCCCCccchhhhcCc--------HHHhhhhhccchhHHhhh
Confidence 23555554 4556663 2222 588999999999999887
No 72
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=33.78 E-value=6.5e+02 Score=29.69 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=28.9
Q ss_pred hHHHHHHHHcccCCh---HHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy13779 515 TGILFTLLKSNVLTD---KERDTLVKPTLDALLDETFPSGNLKS 555 (692)
Q Consensus 515 sGI~~~Ll~~~~~~~---~~~~~~i~~~l~~l~~~~~~~g~w~~ 555 (692)
+-++.+|+.+....+ ....+.++++++++++.+.++|.|..
T Consensus 378 a~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~ 421 (634)
T cd02892 378 AEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAA 421 (634)
T ss_pred HHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEee
Confidence 445566666654432 24567899999999999888888864
No 73
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=31.60 E-value=1.4e+02 Score=32.24 Aligned_cols=73 Identities=18% Similarity=0.096 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhhHHHHHh----c--ccccCCcccccccch----------H-HHHHHHHhhcCch
Q psy13779 13 FISLLQVAYETYN--DKKYLDALLKSSDNVWHA----G--LLRKGYSLCHGVAGN----------A-YAFLTAYHTTHAE 73 (692)
Q Consensus 13 ~~~~~~~a~~~~~--~~~~~~~~~~~~~~~w~~----g--~l~kg~~lchG~ag~----------~-~~~l~~~~~t~~~ 73 (692)
|+.+|..|.+.++ ...|+..|++....+.+. | +|..|. .|.... . .+|-.+++.++|+
T Consensus 118 iA~ALl~A~~~Wg~~~~~y~~~A~~~~~~i~~~~v~~g~~~llpG~---~~f~~~~~~~~npSY~~~pa~~~f~~~~~~~ 194 (342)
T PF01270_consen 118 IAYALLLAARRWGDGAYNYLAEALAIINAIKTHEVNPGRYVLLPGD---WGFNSDDYWTTNPSYFMPPAFRAFAAATGDP 194 (342)
T ss_dssp HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHEETTEEEECSSS---SSCBTTSEEEEEGGGS-HHHHHHHHHHHCCT
T ss_pred HHHHHHHHHhhcCCcchhHHHHHHHHHHHHHhheeCCCceEEeccc---cccCCCCceEeChhhccHHHHHHHHHhcCCh
Confidence 7899999999999 568888888876666654 4 344333 222211 1 5666788899999
Q ss_pred hHHHHHHHHHHHhhc
Q psy13779 74 EQMYRALCFANWVTG 88 (692)
Q Consensus 74 ~~l~ra~~~a~~~~~ 88 (692)
.|..-+.+....+..
T Consensus 195 ~W~~v~~~~~~ll~~ 209 (342)
T PF01270_consen 195 RWNEVADSSYALLQK 209 (342)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 998877776666543
No 74
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=31.58 E-value=3.7e+02 Score=31.79 Aligned_cols=141 Identities=9% Similarity=0.073 Sum_probs=70.2
Q ss_pred hhHHHHHHHhhcccCchhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCC------------ccccccc-CchhHHHHHHH
Q psy13779 403 VTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSD------------RLVQWCH-GSPGFTSLLQV 469 (692)
Q Consensus 403 ~aGIl~~Ll~l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~------------~~~d~~~-G~aGii~~Ll~ 469 (692)
.+-++.+|............+.+++.++++...+.++|-|..-...... ...|-.. ..++.++..+.
T Consensus 383 Ta~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~ 462 (635)
T TIGR01507 383 TAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLG 462 (635)
T ss_pred HHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHH
Confidence 5567777766521111224568899999999888788877532111100 0111111 22333333332
Q ss_pred HHhhcCcHHHHHHHH----hccCCCcccccCcccccccCCCccCcccchhHHHHHHHHcccCChHHHHHHHHHHHHHHHH
Q psy13779 470 AYETYNDKKYLDALL----KSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLD 545 (692)
Q Consensus 470 ly~~~~~~~~l~~~~----~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~~~~~~~~i~~~l~~l~~ 545 (692)
......+...++.+. +..+...+|.. .-...+..|+.-++.+|.... .. ...+.|+++++|+.+
T Consensus 463 ~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g---------~wg~~~~Y~T~~al~aL~~~g-~~--~~~~~i~rAv~wL~~ 530 (635)
T TIGR01507 463 SFGYDDAWPVIERAVEYLKREQEPDGSWFG---------RWGVNYLYGTGAVLSALKAVG-ID--TREPYIQKALAWLES 530 (635)
T ss_pred HhCCCchhHHHHHHHHHHHHccCCCCCCcc---------CCCCccccHHHHHHHHHHHcC-CC--cccHHHHHHHHHHHH
Confidence 222222222333222 22222233421 111233445555555555432 22 124678999999999
Q ss_pred hcCCCCCCCC
Q psy13779 546 ETFPSGNLKS 555 (692)
Q Consensus 546 ~~~~~g~w~~ 555 (692)
.+.++|.|..
T Consensus 531 ~Q~~DGGWge 540 (635)
T TIGR01507 531 HQNPDGGWGE 540 (635)
T ss_pred hcCCCCCCCC
Confidence 9988999864
No 75
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=30.23 E-value=6.8e+02 Score=26.48 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=30.1
Q ss_pred hHHHHHHHHcccCCh---HHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy13779 515 TGILFTLLKSNVLTD---KERDTLVKPTLDALLDETFPSGNLKS 555 (692)
Q Consensus 515 sGI~~~Ll~~~~~~~---~~~~~~i~~~l~~l~~~~~~~g~w~~ 555 (692)
+-++.+|+.+....+ +...+.+.++++|+.+.+.++|.|+.
T Consensus 95 a~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~ 138 (348)
T cd02889 95 AEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAA 138 (348)
T ss_pred HHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEee
Confidence 456666666655542 34668899999999999888888874
No 76
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=29.10 E-value=88 Score=27.06 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCC
Q psy13779 533 DTLVKPTLDALLDETFPSGNL 553 (692)
Q Consensus 533 ~~~i~~~l~~l~~~~~~~g~w 553 (692)
.+.++++++|+++.+.++|.|
T Consensus 91 ~~~~~~a~~~l~~~Q~~dGg~ 111 (113)
T PF13249_consen 91 EEAVRKAVDWLLSCQNPDGGW 111 (113)
T ss_dssp HTTHCCHHHHHHHTB-TTSSB
T ss_pred cHHHHHHHHHHHHhcCCCCCC
Confidence 467889999999988776655
No 77
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=28.82 E-value=1e+03 Score=28.10 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=32.0
Q ss_pred cccchhHHHHHHHHcccCC----hHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy13779 510 AAHGVTGILFTLLKSNVLT----DKERDTLVKPTLDALLDETFPSGNLKSS 556 (692)
Q Consensus 510 ~~HG~sGI~~~Ll~~~~~~----~~~~~~~i~~~l~~l~~~~~~~g~w~~~ 556 (692)
-...++-++.+|....... .+++.+.++++++|+.+.+.++|.|+..
T Consensus 449 ~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~ 499 (634)
T TIGR03463 449 YVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGS 499 (634)
T ss_pred cCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCcccc
Confidence 3344555556665554322 2356778999999999999889998753
No 78
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=28.15 E-value=3.7e+02 Score=28.59 Aligned_cols=197 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhcccCchhHhhhHH--HHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHhhcCcHHHH
Q psy13779 403 VTGILFTLLKSNVLTDKERDTLVK--PTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYL 480 (692)
Q Consensus 403 ~aGIl~~Ll~l~~~~~~~~~~~i~--~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~~~~~~l 480 (692)
+++..+++..+.-..+-.....++ .+..++...+.|+|.+.+....+.|.+. +..+++ ++.++.-.....-+..+
T Consensus 104 L~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~-~Y~al~--ilsllg~~~~~~~e~~v 180 (342)
T COG5029 104 LASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRF-LYIALS--ILSLLGDLDKELFEGAV 180 (342)
T ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHH-HHHHHH--HHHHHhhcchhhhHHHH
Q ss_pred HHHHhccCCCcccccCcccccccCCCccCcccch---hHHHHHHHHcccCChH-HHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy13779 481 DALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGV---TGILFTLLKSNVLTDK-ERDTLVKPTLDALLDETFPSGNLKSS 556 (692)
Q Consensus 481 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~---sGI~~~Ll~~~~~~~~-~~~~~i~~~l~~l~~~~~~~g~w~~~ 556 (692)
+.+.++-+.... .|.|-++ +|....-+....+... +-.+..++.+.|+.+.+.+++.+.-+
T Consensus 181 dyl~kCqnyeGG---------------Fg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR 245 (342)
T COG5029 181 DYLKKCQNYEGG---------------FGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGR 245 (342)
T ss_pred HHHHHhhccCCc---------------ccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCC
Q ss_pred CCCCCCc-cccccCCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHcCCCCCCCc-------cccchHHHHHH
Q psy13779 557 HGSDSDR-LVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYS-------LCHGVSGNAYA 623 (692)
Q Consensus 557 ~~~~~~~-~~~wCHG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~g~~~~~~g-------LChG~aGi~~~ 623 (692)
...-.|. ..-||-++.-|+- .....+.+++.+.+..+.+.. .-|+ ++.|+ .|-|.+|..++
T Consensus 246 ~nKl~D~CYs~WvlsSl~il~----~~~~in~e~L~~yiL~c~q~~-sGGf-sdrp~~~~D~yHt~~~lagLsl~ 314 (342)
T COG5029 246 SNKLVDTCYSFWVLSSLAILG----KLDFINTEELTDYILDCQQET-SGGF-SDRPGEEPDVYHTCFGLAGLSLI 314 (342)
T ss_pred cccCccchhhhhhcchHHhcc----hhhhcCHHHHHHHHHhhcccC-CCCC-CCCCcccchHHHHHHHHHHHHHh
No 79
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=28.14 E-value=3e+02 Score=27.58 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHhccCC----hHHHHHHHHHHHHHHHhhccCCcccccCChHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy13779 245 TSGQAMFYYIYYQRTHD----SKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKL 317 (692)
Q Consensus 245 ~aGIal~l~~L~~~t~~----~~yl~~A~~~i~~~l~~~~~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l~~~ 317 (692)
.+++.+=+..|++..++ ..|++.|.+..+.+....+. ...-.....++|++..|+..+|+.++....++++
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~--~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF--PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC--CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35666667777777766 35888888877776654331 1111123567899999999999988665554443
No 80
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=26.14 E-value=42 Score=24.26 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccc
Q psy13779 535 LVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWC 568 (692)
Q Consensus 535 ~i~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~wC 568 (692)
.++++++|+++.+.++|.|....+...+...+||
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~ 35 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYC 35 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHH
Confidence 3678899999998888888765444333333444
No 81
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.71 E-value=48 Score=32.62 Aligned_cols=11 Identities=36% Similarity=1.123 Sum_probs=7.2
Q ss_pred CCccccccCch
Q psy13779 1 DRLVQWCHGSP 11 (692)
Q Consensus 1 ~~l~~wchgap 11 (692)
|+|..||+|+.
T Consensus 9 DPmCgWCyGa~ 19 (212)
T COG3531 9 DPMCGWCYGAA 19 (212)
T ss_pred CcchhhhhCcc
Confidence 56677777754
No 82
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=20.60 E-value=3.9e+02 Score=29.31 Aligned_cols=76 Identities=12% Similarity=-0.043 Sum_probs=50.9
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHcCCCCC---CCccccchHH--------------HHHHHHHHHHhc
Q psy13779 569 HGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRK---GYSLCHGVSG--------------NAYAFLTAYHTT 631 (692)
Q Consensus 569 HG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~g~~~~---~~gLChG~aG--------------i~~~ll~l~~~t 631 (692)
-|+.=|+.+|+.+.+..++++|.+.+..+++.|+++..... .+-|--|..| .-.++-.+++.+
T Consensus 116 DGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~~~~~~~~NPSY~~p~~~~~fa~~~ 195 (376)
T PRK11097 116 DADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFADDGSWRLNPSYLPPQLLRRFARFL 195 (376)
T ss_pred hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcccccCCCceeeccccccccCCCCCeECcccccHHHHHHHHHhc
Confidence 45666899999999999999999999999988877543211 1123334433 123455566677
Q ss_pred CCHHHHHHHHHHH
Q psy13779 632 HAEEQMYRALCFA 644 (692)
Q Consensus 632 ~d~~~l~~a~~~~ 644 (692)
++..|...+..-.
T Consensus 196 ~~~~W~~l~~~~~ 208 (376)
T PRK11097 196 PGGPWAALAATNA 208 (376)
T ss_pred CCchHHHHHHHHH
Confidence 7777776665433
No 83
>PF12060 DUF3541: Domain of unknown function (DUF3541); InterPro: IPR021928 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length.
Probab=20.34 E-value=97 Score=30.80 Aligned_cols=27 Identities=15% Similarity=-0.065 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHHh
Q psy13779 60 AYAFLTAYHTTHAEEQMYRALCFANWV 86 (692)
Q Consensus 60 ~~~~l~~~~~t~~~~~l~ra~~~a~~~ 86 (692)
|+-=|+|||.|+|+||...+..-+..+
T Consensus 30 GHyglRmYRqT~d~kYaaa~~~D~~rV 56 (227)
T PF12060_consen 30 GHYGLRMYRQTGDPKYAAAVWSDMARV 56 (227)
T ss_pred chHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 455689999999999977665444433
Done!