RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13779
(692 letters)
>gnl|CDD|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like
protein. This family contains the lanthionine synthetase
C-like proteins 1 and 2 which are related to the
bacterial lanthionine synthetase components C (LanC).
LANCL1 and LANCL2 (testes-specific adriamycin
sensitivity protein) are thought to be peptide-modifying
enzyme components in eukaryotic cells. Both proteins are
produced in large quantities in the brain and testes and
may have role in the immune surveillance of these
organs.
Length = 343
Score = 244 bits (624), Expect = 1e-74
Identities = 116/282 (41%), Positives = 165/282 (58%), Gaps = 15/282 (5%)
Query: 242 YVGTSGQAMFYYIYYQR----THDSKYLDKAQKLIERSLKNLKN-RRFSFLNGDAGPIAV 296
Y G +G A + Y+ T+D YL A + I+ SL+ + + RR SFL G+AG AV
Sbjct: 1 YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPDDRRISFLCGNAGVYAV 60
Query: 297 SALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSV 356
A +Y L +++++ + K L +V S +PDE+LYGRAGYLY+LLF+NK
Sbjct: 61 GAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSGLPDELLYGRAGYLYALLFLNKKFGFK 120
Query: 357 NIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVL 416
I +SLI+ + D+IL SG+ +A+ ++ PL YEWH K Y GAAHG+ GIL+ LL++ +
Sbjct: 121 KIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQTPLF 180
Query: 417 TDKERDT-LVKPTLDALLHETFPSGNLKSSHGSDS-DRLVQWCHGSPGFTSLLQVAYETY 474
K L+K +LD LL FPSGN SS G+ DRLVQWCHG+PG LL AY +
Sbjct: 181 LLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVF 240
Query: 475 NDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTG 516
+++YL+A +K + + W G K G HG+ G
Sbjct: 241 KEEQYLEAAIKCGE--LIWKRGLL------KKGPGLCHGIAG 274
Score = 220 bits (562), Expect = 9e-66
Identities = 93/191 (48%), Positives = 122/191 (63%), Gaps = 3/191 (1%)
Query: 500 YEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDT-LVKPTLDALLDETFPSGNLKSSHG 558
YEWH K Y GAAHG+ GIL+ LL++ + K L+K +LD LL FPSGN SS G
Sbjct: 153 YEWHGKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLG 212
Query: 559 SDS-DRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGV 617
+ DRLVQWCHG+PG + LL AY + +++YL+A +K + +W GLL+KG LCHG+
Sbjct: 213 NRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRGLLKKGPGLCHGI 272
Query: 618 SGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDT-TPDRPYSLYEGKVGVAFFLL 676
+GNAYAFL Y T + +YRA FA ++ Y PDRP+SL+EG G A FL
Sbjct: 273 AGNAYAFLLLYRLTGDLKYLYRACKFAEFLINYGFKNGARIPDRPFSLFEGLAGTACFLA 332
Query: 677 DILKPTNAKFP 687
D+L+P A FP
Sbjct: 333 DLLQPRQAGFP 343
Score = 156 bits (397), Expect = 2e-42
Identities = 61/127 (48%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Query: 1 DRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNA 60
DRLVQWCHG+PG + LL AY + +++YL+A +K + +W GLL+KG LCHG+AGNA
Sbjct: 217 DRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNA 276
Query: 61 YAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDT-TPDRPYSLYEGKVGVAFFLLDILK 119
YAFL Y T + +YRA FA ++ Y PDRP+SL+EG G A FL D+L+
Sbjct: 277 YAFLLLYRLTGDLKYLYRACKFAEFLINYGFKNGARIPDRPFSLFEGLAGTACFLADLLQ 336
Query: 120 PTNAKWN 126
P A +
Sbjct: 337 PRQAGFP 343
Score = 33.4 bits (77), Expect = 0.37
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 244 GTSGQAMFYYIYYQRTHDSKYLDKAQK----LIERSLKNLKN---RRFSFLNGDAGPI 294
G +G A + + Y+ T D KYL +A K LI KN R FS G AG
Sbjct: 271 GIAGNAYAFLLLYRLTGDLKYLYRACKFAEFLINYGFKNGARIPDRPFSLFEGLAGTA 328
>gnl|CDD|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein.
Lanthionines are thioether bridges that are putatively
generated by dehydration of Ser and Thr residues
followed by addition of cysteine residues within the
peptide. This family contains the lanthionine synthetase
C-like proteins 1 and 2 which are related to the
bacterial lanthionine synthetase components C (LanC).
LANCL1 (P40 seven-transmembrane-domain protein) and
LANCL2 (testes-specific adriamycin sensitivity protein)
are thought to be peptide-modifying enzyme components in
eukaryotic cells. Both proteins are produced in large
quantities in the brain and testes and may have role in
the immune surveillance of these organs. Lanthionines
are found in lantibiotics, which are peptide-derived,
post-translationally modified antimicrobials produced by
several bacterial strains. This region contains seven
internal repeats.
Length = 352
Score = 187 bits (478), Expect = 1e-53
Identities = 104/332 (31%), Positives = 163/332 (49%), Gaps = 20/332 (6%)
Query: 238 DYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIE---RSLKNLKNRRFSFLNGDAGPI 294
D S+Y G +G A+F Y+ T D KYL+ A K ++ +SL + SF G AG
Sbjct: 4 DLSLYTGLAGIALFLLELYKVTGDEKYLELAHKYLKKIAKSLSSSGRDSISFFCGLAGIA 63
Query: 295 AVSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIK 354
A A+ K LG + L +++L L + + ++P +++ GRAG L LL +NK +
Sbjct: 64 AALAVASKLLGDYQLLLDYLKRLLELIENEILEDKNLPYDVISGRAGILLYLLLLNKELG 123
Query: 355 SVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSN 414
LI ++++++L SG+NL+ S PL YEW+ G AHG++GIL+ LL
Sbjct: 124 E-EKVLDLILKILETLLESGRNLA----SESPLLYEWYGTVNLGFAHGLSGILYALLLLY 178
Query: 415 --VLTDKERDTLVKPTLDALLHETFP-SGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAY 471
+++ L+K L+ L FP SGN S G++ DR V WCHG+PG L A
Sbjct: 179 LKGTGNEKLLELIKKALNYELSLKFPDSGNWPDSRGNERDRRVAWCHGAPGILLALLKAA 238
Query: 472 ETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKE 531
+ N+++ L+ ++ + V W G HG++G L+ LL LT+ E
Sbjct: 239 KALNEEELLEEAEEALE--VVWKKGL------LLKNPSLCHGLSGNLYILLLLYRLTNDE 290
Query: 532 R-DTLVKPTLDALLDETFPSGNLKSSHGSDSD 562
+ + +LD G L+ G D
Sbjct: 291 KYLERANKFAEKILDYGKELGWLRGLPGGDES 322
Score = 168 bits (427), Expect = 1e-46
Identities = 83/249 (33%), Positives = 122/249 (48%), Gaps = 15/249 (6%)
Query: 456 WCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECE------YEWHDKNYYG 509
G G L + + ++K LD +LK + + S YEW+ G
Sbjct: 104 VISGRAGILLYLLLLNKELGEEKVLDLILKILET-LLESGRNLASESPLLYEWYGTVNLG 162
Query: 510 AAHGVTGILFTLLKSN--VLTDKERDTLVKPTLDALLDETFP-SGNLKSSHGSDSDRLVQ 566
AHG++GIL+ LL +++ L+K L+ L FP SGN S G++ DR V
Sbjct: 163 FAHGLSGILYALLLLYLKGTGNEKLLELIKKALNYELSLKFPDSGNWPDSRGNERDRRVA 222
Query: 567 WCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLT 626
WCHG+PG + L A + N+++ L+ ++ + VW GLL K SLCHG+SGN Y L
Sbjct: 223 WCHGAPGILLALLKAAKALNEEELLEEAEEALEVVWKKGLLLKNPSLCHGLSGNLYILLL 282
Query: 627 AYHTTHAEEQMYRALCFANWVTGYNKHE-----DTTPDRPYSLYEGKVGVAFFLLDILKP 681
Y T+ E+ + RA FA + Y K D + L EG G+ +FLLD+L P
Sbjct: 283 LYRLTNDEKYLERANKFAEKILDYGKELGWLRGLPGGDESFGLMEGIAGILYFLLDLLNP 342
Query: 682 TNAKFPGYE 690
++FP
Sbjct: 343 EESRFPSAL 351
Score = 115 bits (289), Expect = 7e-28
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
Query: 1 DRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNA 60
DR V WCHG+PG + L A + N+++ L+ ++ + VW GLL K SLCHG++GN
Sbjct: 218 DRRVAWCHGAPGILLALLKAAKALNEEELLEEAEEALEVVWKKGLLLKNPSLCHGLSGNL 277
Query: 61 YAFLTAYHTTHAEEQMYRALCFANWVTGYNKHE-----DTTPDRPYSLYEGKVGVAFFLL 115
Y L Y T+ E+ + RA FA + Y K D + L EG G+ +FLL
Sbjct: 278 YILLLLYRLTNDEKYLERANKFAEKILDYGKELGWLRGLPGGDESFGLMEGIAGILYFLL 337
Query: 116 DILKPTNAKW 125
D+L P +++
Sbjct: 338 DLLNPEESRF 347
Score = 48.9 bits (117), Expect = 5e-06
Identities = 78/383 (20%), Positives = 138/383 (36%), Gaps = 67/383 (17%)
Query: 49 GYSLCHGVAGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKV 108
SL G+AG A L Y T ++ Y L ++ K ++ S + G
Sbjct: 4 DLSLYTGLAGIALFLLELYKVT--GDEKYLELA-HKYLKKIAKSLSSSGRDSISFFCGLA 60
Query: 109 GVAFFLLDILKPTNAKWNQEYPNINIENL--IAHLMRERTDYDTDYKSLMLFHSYEIKTA 166
G+A L K + ++ L + L+ D + Y++ +
Sbjct: 61 GIAAALAVASK------LLGDYQLLLDYLKRLLELIENEILEDKNLP-------YDVISG 107
Query: 167 RSVKMETKHSSRHHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDS 226
R+ G L E E+ VL K+ TL ++ S
Sbjct: 108 RA------------------GILLYLLLLNKELGEEKVLDLI--LKILETLLESGRNLAS 147
Query: 227 EYETSDKFRDHDYSVYV-GTSG-QAMFYYIYYQRTHDSKYLDKAQKLI--ERSLK----- 277
E ++ + G SG +Y + T + K L+ +K + E SLK
Sbjct: 148 ESPLLYEWYGTVNLGFAHGLSGILYALLLLYLKGTGNEKLLELIKKALNYELSLKFPDSG 207
Query: 278 -------NLKNRRFSFLNGDAGPIAVS-ALIYKALGKQEKLESSVQKLKALAPHLVDLRS 329
N ++RR ++ +G G I ++ KAL ++E LE + + L+ + + L++
Sbjct: 208 NWPDSRGNERDRRVAWCHGAPG-ILLALLKAAKALNEEELLEEAEEALEVVWKKGLLLKN 266
Query: 330 DIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEY 389
+ +G +G LY LL + + + + IL G+ L + E
Sbjct: 267 PS---LCHGLSGNLYILLLLYRLTNDEKYL-ERANKFAEKILDYGKELGWLRGLPGGDE- 321
Query: 390 EWHDKNYYGAAHGVTGILFTLLK 412
+G G+ GIL+ LL
Sbjct: 322 ------SFGLMEGIAGILYFLLD 338
Score = 33.5 bits (77), Expect = 0.39
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 610 GYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKV 669
SL G++G A L Y T ++ Y L ++ K ++ S + G
Sbjct: 4 DLSLYTGLAGIALFLLELYKVT--GDEKYLELA-HKYLKKIAKSLSSSGRDSISFFCGLA 60
Query: 670 GVAFFLLDILKPTNAKFPGYEDI 692
G+A L +K G +
Sbjct: 61 GIAAALAVA-----SKLLGDYQL 78
Score = 31.2 bits (71), Expect = 1.7
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 19/78 (24%)
Query: 6 WCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNV----------------WHAGLLRKG 49
G G + L + + ++K LD +LK + + W+ G + G
Sbjct: 104 VISGRAGILLYLLLLNKELGEEKVLDLILKILETLLESGRNLASESPLLYEWY-GTVNLG 162
Query: 50 YSLCHGVAGNAYAFLTAY 67
++ HG++G YA L Y
Sbjct: 163 FA--HGLSGILYALLLLY 178
Score = 30.0 bits (68), Expect = 4.0
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 8 HGSPGFISLLQVAYETYNDKKYLDAL---LKSSDNVWHAGLLRKGYSLCHGVAGNAYAFL 64
G G L Y+ D+KYL+ LK + R S G+AG A A
Sbjct: 9 TGLAGIALFLLELYKVTGDEKYLELAHKYLKKIAKSL-SSSGRDSISFFCGLAGIAAALA 67
Query: 65 TAYHTTHAEEQM 76
A + +
Sbjct: 68 VASKLLGDYQLL 79
>gnl|CDD|239881 cd04434, LanC_like, LanC-like proteins. LanC is the cyclase enzyme
of the lanthionine synthetase. Lanthionine is a
lantibiotic, a unique class of peptide antibiotics. They
are ribosomally synthesized as a precursor peptide and
then post-translationally modified to contain thioether
cross-links called lanthionines (Lans) or
methyllanthionines (MeLans), in addition to
2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine
(Dhb). These unusual amino acids are introduced by the
dehydration of serine and threonine residues, followed
by thioether formation via addition of cysteine thiols,
catalysed by LanB and LanC or LanM. LanC, the cyclase
component, is a zinc metalloprotein, whose bound metal
has been proposed to activate the thiol substrate for
nucleophilic addition. A related domain is also present
in LanM and other pro- and eukaryotic proteins of
unknown function.
Length = 343
Score = 163 bits (414), Expect = 7e-45
Identities = 92/287 (32%), Positives = 132/287 (45%), Gaps = 17/287 (5%)
Query: 242 YVGTSGQAMFYYIYYQRTHDSKYLDKAQKL---IERSLKNLKNRRFSFLNGDAGPIAVSA 298
Y G +G A+ Y+ T D KY D A K I +SL +L + S +G AG A
Sbjct: 1 YHGAAGIALLLLELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSGLAGIAYALA 60
Query: 299 LIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNI 358
+ K LG QE L+ ++ L L +++ D+ ++L G AG L +LL + K I
Sbjct: 61 ALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGLAGLLLALLLLYKTFGE-EI 119
Query: 359 EASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSN-VLT 417
LIR+++D +L G+N + + Y + G AHG+ GIL LL
Sbjct: 120 FLELIRKILDYLLELGKNGDGKIRW---PMYFPEGRVNLGLAHGLAGILLALLLLYKKTV 176
Query: 418 DKERDTLVKPTLDALLHETFPSGNL--KSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYN 475
DK + L+K L SG S + LV WCHG+PG L +AY+
Sbjct: 177 DKSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALG 236
Query: 476 DKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLL 522
D KY +A K+ + ++W G E KN G HG+ G L LL
Sbjct: 237 DDKYDEAAEKALE--LAWKRGLLEL----KN-PGLCHGIAGNLLILL 276
Score = 156 bits (395), Expect = 3e-42
Identities = 93/361 (25%), Positives = 138/361 (38%), Gaps = 38/361 (10%)
Query: 337 YGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNY 396
+G AG LL + + + L + ++ I++S +L
Sbjct: 2 HGAAGIALLLLELYRVTPDEKYQ-DLAHKALEYIVKSLSSL---------------PDTD 45
Query: 397 YGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQW 456
G+ GI + L L+ D + L LL L+ + D
Sbjct: 46 ISLFSGLAGIAYALA---ALSKGLGDQELLKELLELLLLLVEL-ILEDLKDLNYD----L 97
Query: 457 CHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFV------SWSFGECEYEWHDKNYYGA 510
G G L + Y+T+ ++ +L+ + K D + Y + G
Sbjct: 98 LSGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGL 157
Query: 511 AHGVTGILFTLLKSN-VLTDKERDTLVKPTLDALLDETFPSGNL--KSSHGSDSDRLVQW 567
AHG+ GIL LL DK + L+K L SG S + LV W
Sbjct: 158 AHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAW 217
Query: 568 CHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLL-RKGYSLCHGVSGNAYAFLT 626
CHG+PG + L +AY+ D KY +A K+ + W GLL K LCHG++GN L
Sbjct: 218 CHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGNLLILLL 277
Query: 627 AYHTTHAEEQMYRALCFANW----VTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPT 682
Y T + + RAL A G+ D+T DR L G G+A LL +L P
Sbjct: 278 LYKLTGDLKFLARALALALLLISHANGWLCGGDSTGDRSPGLMTGLAGIALALLRLLNPK 337
Query: 683 N 683
Sbjct: 338 R 338
Score = 107 bits (268), Expect = 3e-25
Identities = 48/127 (37%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 1 DRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLL-RKGYSLCHGVAGN 59
LV WCHG+PG + L +AY+ D KY +A K+ + W GLL K LCHG+AGN
Sbjct: 212 RFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGN 271
Query: 60 AYAFLTAYHTTHAEEQMYRALCFANW----VTGYNKHEDTTPDRPYSLYEGKVGVAFFLL 115
L Y T + + RAL A G+ D+T DR L G G+A LL
Sbjct: 272 LLILLLLYKLTGDLKFLARALALALLLISHANGWLCGGDSTGDRSPGLMTGLAGIALALL 331
Query: 116 DILKPTN 122
+L P
Sbjct: 332 RLLNPKR 338
Score = 47.9 bits (114), Expect = 1e-05
Identities = 61/339 (17%), Positives = 108/339 (31%), Gaps = 54/339 (15%)
Query: 54 HGVAGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFF 113
HG AG A L Y T E+ A ++ PD SL+ G G+A+
Sbjct: 2 HGAAGIALLLLELYRVTPDEKYQDLAHKALEYIVKSLSSL---PDTDISLFSGLAGIAYA 58
Query: 114 LLDILKPTNAKWNQEYPNINIENLIAHLMRERTDYDTDY--------KSLMLFH------ 159
L + K + + + L+ ++ + D + D +L+L +
Sbjct: 59 LAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGLAGLLLALLLLYKTFGEE 118
Query: 160 ---SYEIKTARSVKMETKHSSRHHQNKYKYGEGE-----------------KSKLFTVEN 199
K + K+ + + EG TV+
Sbjct: 119 IFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDK 178
Query: 200 KEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYV--GTSGQAMFYYIYYQ 257
+ ++ + RL +D + S + + V G G + + Y+
Sbjct: 179 SLEALIK-----ALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYK 233
Query: 258 RTHDSKYLDKAQKLIERSLK--NLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQ 315
D KY + A+K +E + K L+ + +G AG + L+ L K +
Sbjct: 234 ALGDDKYDEAAEKALELAWKRGLLELKNPGLCHGIAG-NLLILLLLYKLTGDLKFLARAL 292
Query: 316 KLKALA-------PHLVDLRSDIPDEILYGRAGYLYSLL 347
L L D D ++ G AG +LL
Sbjct: 293 ALALLLISHANGWLCGGDSTGDRSPGLMTGLAGIALALL 331
Score = 35.2 bits (81), Expect = 0.11
Identities = 42/185 (22%), Positives = 59/185 (31%), Gaps = 21/185 (11%)
Query: 511 AHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHG 570
HG GI LL+ +T E+ L+ S L S +D G
Sbjct: 1 YHGAAGIALLLLELYRVTPDEKYQ---DLAHKALEYIVKS--LSSLPDTDISLFS----G 51
Query: 571 SPGFISLLQVAYETYND---KKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTA 627
G L + D K L LL + L Y L G++G A L
Sbjct: 52 LAGIAYALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGLAGLLLALLLL 111
Query: 628 YHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKV---------GVAFFLLDI 678
Y T E + +++ K+ D P EG+V G+ LL +
Sbjct: 112 YKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLL 171
Query: 679 LKPTN 683
K T
Sbjct: 172 YKKTV 176
Score = 33.3 bits (76), Expect = 0.42
Identities = 30/178 (16%), Positives = 50/178 (28%), Gaps = 32/178 (17%)
Query: 6 WCHGSPGFISLLQVAYETYNDK----------KYLDALLKSSDNVWHAGLLRKG----YS 51
G G + L + Y+T+ ++ YL L K+ D +
Sbjct: 97 LLSGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLG 156
Query: 52 LCHGVAGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYE------ 105
L HG+AG A L Y T ++ + + + + P
Sbjct: 157 LAHGLAGILLALLLLYKKTV-DKSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLV 215
Query: 106 ----GKVGVAFFLLDILKPTNAKWNQEYPNINIENLIAHLMRERTDYDTDYKSLMLFH 159
G G+ LL K E E + + + K+ L H
Sbjct: 216 AWCHGAPGILLALLLAYKALGDDKYDEA----AEKALELAWKRGL---LELKNPGLCH 266
Score = 31.7 bits (72), Expect = 1.2
Identities = 31/129 (24%), Positives = 42/129 (32%), Gaps = 12/129 (9%)
Query: 9 GSPGFISLLQVAYETYND---KKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNAYAFLT 65
G G L + D K L LL + L Y L G+AG A L
Sbjct: 51 GLAGIAYALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGLAGLLLALLL 110
Query: 66 AYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKV---------GVAFFLLD 116
Y T E + +++ K+ D P EG+V G+ LL
Sbjct: 111 LYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLL 170
Query: 117 ILKPTNAKW 125
+ K T K
Sbjct: 171 LYKKTVDKS 179
Score = 29.0 bits (65), Expect = 8.4
Identities = 54/335 (16%), Positives = 97/335 (28%), Gaps = 61/335 (18%)
Query: 8 HGSPGFISLLQVAYETYNDKKY-------LDALLKSSDNVWHAGLLRKGYSLCHGVAGNA 60
HG+ G LL Y D+KY L+ ++KS + L SL G+AG A
Sbjct: 2 HGAAGIALLLLELYRVTPDEKYQDLAHKALEYIVKSLSS-----LPDTDISLFSGLAGIA 56
Query: 61 YAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKP 120
YA +E + L + + + Y L G G+ LL +
Sbjct: 57 YALAALSKGLGDQELLKELLELLLLLVELILEDLKDLN--YDLLSGLAGLLLALLLL--- 111
Query: 121 TNAKWNQEYPNINIENLIAHLMRERTDYDTDYKSLMLFHSYEI----------------- 163
+ +E I ++ +L+ + D + M F +
Sbjct: 112 -YKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLL 170
Query: 164 ---KTARSVKMETKHSSRHHQNKYKYGEGEKSKLFTVENKEKI----------VLHPSFE 210
KT + ++ + + G + +L
Sbjct: 171 LYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLL 230
Query: 211 TKVWATLTRLIEDIDSEYE---TSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDK 267
+ E + E + + G +G + + Y+ T D K+L +
Sbjct: 231 AYKALGDDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGNLLILLLLYKLTGDLKFLAR 290
Query: 268 AQKLIERSLKNLKN----------RRFSFLNGDAG 292
A L + + R + G AG
Sbjct: 291 ALALALLLISHANGWLCGGDSTGDRSPGLMTGLAG 325
>gnl|CDD|240109 cd04792, LanM-like, LanM-like proteins. LanM is a bifunctional
enzyme, involved in the synthesis of class II
lantibiotics. It is responsible for both the dehydration
and the cyclization of the precursor-peptide during
lantibiotic synthesis. The C-terminal domain shows
similarity to LanC, the cyclase component of the lan
operon, but the N terminus seems to be unrelated to the
dehydratase, LanB.
Length = 825
Score = 87.0 bits (216), Expect = 1e-17
Identities = 64/324 (19%), Positives = 108/324 (33%), Gaps = 44/324 (13%)
Query: 238 DYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN-----RRFSFLNGDAG 292
+Y G++G A+F Q T D +Y A+K+++ +K+L +G G
Sbjct: 486 GNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGLGG 545
Query: 293 PIAVSALIYKALGKQEKLESSVQKLKALAPHLV-DLRSDIPDEILYGRAGYLYSLLFVNK 351
+ LGK K + + K + + + D + + G AG + LL + +
Sbjct: 546 ILYA----LTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGAAGLILVLLSLYE 601
Query: 352 HIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLL 411
S + +D L+ G +L + N G AHG +GI + LL
Sbjct: 602 LFLS--------ERFLDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALL 653
Query: 412 KSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPG--FTSLLQV 469
+ +T R + F + WCHG+PG L +
Sbjct: 654 RLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPRKDGNSFSAAWCHGAPGILLARLELL 713
Query: 470 AYETYND-------KKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLL 522
+ +D + L LK + C HG G L LL
Sbjct: 714 KFNDLDDEELKEEIEIALKTTLKEGF---GNNHSLC-------------HGDLGNLEILL 757
Query: 523 K-SNVLTDKERDTLVKPTLDALLD 545
+ D++ L +L
Sbjct: 758 YAAKAFGDEKLQELANSLAIKVLS 781
Score = 79.3 bits (196), Expect = 3e-15
Identities = 76/367 (20%), Positives = 122/367 (33%), Gaps = 45/367 (12%)
Query: 329 SDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLE 388
S + +++ G AG L ++ + + ++ IL S L
Sbjct: 483 SPLGNDLYDGSAGIALFLA----YLGQLTGDER-YTRLARKILDS---------LVKSLS 528
Query: 389 YEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDT-LVKPTLDALLHETFPSGNLKSSHG 447
D GA G+ GIL+ L L +R L K LD + L
Sbjct: 529 ELKTDDTGIGAFSGLGGILYALTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKL----- 583
Query: 448 SDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECE--YEWHDK 505
D + G+ G +L YE + +++LD LK D+ + + E
Sbjct: 584 ---D----FISGAAGLILVLLSLYELFLSERFLDLALKCGDHLLENASNEDGGIGPAEQP 636
Query: 506 NYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLV 565
N G AHG +GI + LL+ +T R + F +
Sbjct: 637 NLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPRKDGNSFSA 696
Query: 566 QWCHGSPG-FISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAF 624
WCHG+PG ++ L++ D + L ++ + +SLCHG GN
Sbjct: 697 AWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKEGFGNNHSLCHGDLGNLEIL 756
Query: 625 LTAY-------HTTHAEEQMYRALCFAN---WVTGYNKHEDTTPDRPYSLYEGKVGVAFF 674
L A A + L W+ G + L G G+ +
Sbjct: 757 LYAAKAFGDEKLQELANSLAIKVLSQGKKNGWLCGLPRG-----FESPGLMTGLAGIGYG 811
Query: 675 LLDILKP 681
LL + P
Sbjct: 812 LLRLAAP 818
Score = 43.5 bits (103), Expect = 4e-04
Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 22/140 (15%)
Query: 4 VQWCHGSPG-FISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNAYA 62
WCHG+PG ++ L++ D + L ++ + +SLCHG GN
Sbjct: 696 AAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKEGFGNNHSLCHGDLGNLEI 755
Query: 63 FLTAY-------HTTHAEEQMYRALCFAN---WVTGYNKHEDTTPDRPYSLYEGKVGVAF 112
L A A + L W+ G + L G G+ +
Sbjct: 756 LLYAAKAFGDEKLQELANSLAIKVLSQGKKNGWLCGLPRG-----FESPGLMTGLAGIGY 810
Query: 113 FLLDILKPTNAKWNQEYPNI 132
LL + P P+I
Sbjct: 811 GLLRLAAP------DRVPSI 824
Score = 31.2 bits (71), Expect = 2.5
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 8 HGSPGFISLLQVAYETYNDKKYLDALLKSSDN----------VWHAGLLRKGYSLCHGVA 57
G+ G I +L YE + +++LD LK D+ HG +
Sbjct: 587 SGAAGLILVLLSLYELFLSERFLDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGAS 646
Query: 58 GNAYAFLTAYHTTHAEE 74
G A+A L Y T
Sbjct: 647 GIAWALLRLYKVTGDSR 663
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein
LanM. Members of this family are known generally as
LanM, a multifunctional enzyme of lantibiotic
biosynthesis. This catalysis by LanM distinguishes the
type 2 lantibiotics, such as mersacidin, cinnamycin, and
lichenicidin, from LanBC-produced type 1 lantibiotics
such as nisin and subtilin. The N-terminal domain
contains regions associated with Ser and Thr
dehydration. The C-terminal region contains a pfam05147
domain, which catalyzes the formation of the lanthionine
bridge [Cellular processes, Toxin production and
resistance].
Length = 931
Score = 75.8 bits (187), Expect = 5e-14
Identities = 65/310 (20%), Positives = 97/310 (31%), Gaps = 43/310 (13%)
Query: 390 EWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSD 449
GA G+ GI++ L L + L L+
Sbjct: 637 RLAKSMGLGAFSGLGGIIYALAHLGQLLND-------SELLNDAKRILNR--LEELI-IK 686
Query: 450 SDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSD----NFVSWSFGECEYEWHDK 505
+ + G+ G +L YE D + L+ + + V G D+
Sbjct: 687 DEEFLDLIGGAAGAILVLLNLYEVTGDPEVLELAIACGEHLLKQAVKEEGGIAWKTPQDE 746
Query: 506 NYY-GAAHGVTGILFTLLKSNVLTDKER-DTLVKPTL---DALLDETFPSGNLKSSHGSD 560
G +HG GI + LL+ +T +R K L +L D GN
Sbjct: 747 KPLTGFSHGAAGIAWALLRLYKVTGDQRYLEAAKEALAYERSLFDPE--EGNWPDLREEA 804
Query: 561 SDRL-VQWCHGSPG----FISLLQVAYETYND---KKYLDALLKSSDNVWHAGLLRKGYS 612
V WCHG+PG + LL++ + D + L+ LK S
Sbjct: 805 GPSFPVAWCHGAPGILLSRLGLLEILDDDEIDEDIEIALETTLKLG--------FGDNDS 856
Query: 613 LCHGVSGNAYAFLTAYHTTHAEEQMYRAL-CFANWVTGYNKHED-----TTPDRPYSLYE 666
LCHG GN L A EE A + + K+ L
Sbjct: 857 LCHGDLGNLEILLEAAKVLDDEELQELARRIASQVLARLTKNGRYRLGLPRGVESPGLMT 916
Query: 667 GKVGVAFFLL 676
G G+ + LL
Sbjct: 917 GLAGIGYGLL 926
Score = 69.2 bits (170), Expect = 5e-12
Identities = 57/242 (23%), Positives = 91/242 (37%), Gaps = 31/242 (12%)
Query: 238 DYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRR-------FSFLNGD 290
+Y G +G A+F T +Y D A+K ++ K L+ + +G
Sbjct: 591 GNDLYDGLAGIALFLAYLAALTGKKRYRDLARKALQPLRKYLETQLRLAKSMGLGAFSGL 650
Query: 291 AGPIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDE----ILYGRAGYLYSL 346
G I A + + L E L K + L +L I DE ++ G AG + L
Sbjct: 651 GGIIYALAHLGQLLNDSELLN----DAKRILNRLEEL--IIKDEEFLDLIGGAAGAILVL 704
Query: 347 LFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGI 406
L + + + L + +L+ + P + +K G +HG GI
Sbjct: 705 LNLYEVTGDPEV-LELAIACGEHLLKQAVKEEGGIAWKTPQD----EKPLTGFSHGAAGI 759
Query: 407 LFTLLKSNVLTDKER-DTLVKPTLDALLHE--TFPS--GNLKSSHGSDSDRL-VQWCHGS 460
+ LL+ +T +R K +AL +E F GN V WCHG+
Sbjct: 760 AWALLRLYKVTGDQRYLEAAK---EALAYERSLFDPEEGNWPDLREEAGPSFPVAWCHGA 816
Query: 461 PG 462
PG
Sbjct: 817 PG 818
Score = 58.8 bits (143), Expect = 8e-09
Identities = 62/331 (18%), Positives = 115/331 (34%), Gaps = 48/331 (14%)
Query: 215 ATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIER 274
L L + ++++ + + + G G Q +DS+ L+ A++++ R
Sbjct: 623 KALQPLRKYLETQLRLA---KSMGLGAFSGLGGIIYALAHLGQLLNDSELLNDAKRILNR 679
Query: 275 SLKNLKN--RRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIP 332
+ + + G AG I V +Y+ G E LE A HL+
Sbjct: 680 LEELIIKDEEFLDLIGGAAGAILVLLNLYEVTGDPEVLE----LAIACGEHLLKQAVKEE 735
Query: 333 DEILY--------------GRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLS 378
I + G AG ++LL + K ++ L ++L
Sbjct: 736 GGIAWKTPQDEKPLTGFSHGAAGIAWALLRLYKVTGDQRY-LEAAKE----ALAYERSLF 790
Query: 379 ARKKSRVPLEYEWHDKNYYGA-AHGVTGILFT--LLKSNVLTDKERDTLVKPTLDALLHE 435
++ P E ++ A HG GIL + L + D+ + + L+ L
Sbjct: 791 DPEEGNWPDLREEAGPSFPVAWCHGAPGILLSRLGLLEILDDDEIDEDIEI-ALETTLKL 849
Query: 436 TFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSF 495
F D+D L CHG G +L A + +D++ + + + ++
Sbjct: 850 GF----------GDNDSL---CHGDLGNLEILLEAAKVLDDEELQELARRIASQVLARLT 896
Query: 496 GECEYEW---HDKNYYGAAHGVTGILFTLLK 523
Y G G+ GI + LL+
Sbjct: 897 KNGRYRLGLPRGVESPGLMTGLAGIGYGLLR 927
Score = 47.3 bits (113), Expect = 3e-05
Identities = 31/126 (24%), Positives = 43/126 (34%), Gaps = 21/126 (16%)
Query: 3 LVQWCHGSPG----FISLLQVAYETYND---KKYLDALLKSSDNVWHAGLLRKGYSLCHG 55
V WCHG+PG + LL++ + D + L+ LK SLCHG
Sbjct: 809 PVAWCHGAPGILLSRLGLLEILDDDEIDEDIEIALETTLKLG--------FGDNDSLCHG 860
Query: 56 VAGNAYAFLTAYHTTHAEEQMYRAL-CFANWVTGYNKHED-----TTPDRPYSLYEGKVG 109
GN L A EE A + + K+ L G G
Sbjct: 861 DLGNLEILLEAAKVLDDEELQELARRIASQVLARLTKNGRYRLGLPRGVESPGLMTGLAG 920
Query: 110 VAFFLL 115
+ + LL
Sbjct: 921 IGYGLL 926
Score = 37.2 bits (87), Expect = 0.031
Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 22/116 (18%)
Query: 1 DRLVQWCHGSPGFISLLQVAYETYNDKKYLDA-------LLKSSDNVWHAGLLRK----- 48
+ + G+ G I +L YE D + L+ LLK + +
Sbjct: 688 EEFLDLIGGAAGAILVLLNLYEVTGDPEVLELAIACGEHLLKQAVKEEGGIAWKTPQDEK 747
Query: 49 ---GYSLCHGVAGNAYAFLTAY---HTTHAEEQMYRALCFANWVTGYNKHEDTTPD 98
G+S HG AG A+A L Y E AL + + ++ E PD
Sbjct: 748 PLTGFS--HGAAGIAWALLRLYKVTGDQRYLEAAKEALAYERSL--FDPEEGNWPD 799
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms].
Length = 963
Score = 59.4 bits (144), Expect = 5e-09
Identities = 73/361 (20%), Positives = 130/361 (36%), Gaps = 56/361 (15%)
Query: 240 SVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRF----SFLNGDAGPIA 295
+Y G++G A+F+ T Y + A K ++ S K++ N G +G
Sbjct: 644 DLYDGSAGIALFFAYLALVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAFTGLSGYFY 703
Query: 296 VSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKS 355
IY ++S+ ++ L + +S PD + G AG + L+ + K
Sbjct: 704 ALWKIYSVTRDNYLIQSAENSIRHLEI--LVQKSKDPD-FINGLAGVICVLVSIYKLTD- 759
Query: 356 VNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNV 415
E + + + + S L G +HG +GI+ TLLK
Sbjct: 760 ---EPKFLELAISLGRILMEKIVGNDSSETVL---------LGFSHGASGIILTLLKLYE 807
Query: 416 LTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPG-FTSLLQVAYETY 474
T +E L + E +K SD+ +WC G+PG S L + Y
Sbjct: 808 ATGEES-------LLKKIKELLSYERMKF-----SDKFTRWCSGAPGILVSRLLLKKI-Y 854
Query: 475 NDKKYLDALLKSSDNFVSWSFGE---CEYEWHDKNYYGAAHGVTGIL-FTLLKSNVLTDK 530
+D+ + ++ ++ G C HG GI+ L + +L+D
Sbjct: 855 DDESIDREIQQALKTIINNGLGNDSLC-------------HGDFGIIEVLLHYAKILSDS 901
Query: 531 ERDTLVKPTLDALLDETFPSG-NLKSSHGSDSDRLVQWCHGSPGF-ISLLQVAYETYNDK 588
E + L+ + G N +H + +G G SLL+++ +
Sbjct: 902 ELLESANKLANELVSKAITYGINQGLNHA---NESFGLMNGVTGIGYSLLRISSPKFVPS 958
Query: 589 K 589
Sbjct: 959 I 959
Score = 48.6 bits (116), Expect = 1e-05
Identities = 47/184 (25%), Positives = 68/184 (36%), Gaps = 29/184 (15%)
Query: 508 YGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQW 567
G +HG +GI+ TLLK T +E L + E +K S D+ +W
Sbjct: 789 LGFSHGASGIILTLLKLYEATGEES-------LLKKIKELLSYERMKFS-----DKFTRW 836
Query: 568 CHGSPG-FISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGY---SLCHGVSGNAYA 623
C G+PG +S L + K Y D + ++ G SLCHG G
Sbjct: 837 CSGAPGILVSRLLLK------KIYDDESIDREIQQALKTIINNGLGNDSLCHGDFGIIEV 890
Query: 624 FLTAYHTTHAEEQMYRALCFANWVT------GYNKHEDTTPDRPYSLYEGKVGVAFFLLD 677
L E + A AN + G N+ + + L G G+ + LL
Sbjct: 891 LLHYAKILSDSELLESANKLANELVSKAITYGINQ-GLNHANESFGLMNGVTGIGYSLLR 949
Query: 678 ILKP 681
I P
Sbjct: 950 ISSP 953
Score = 36.7 bits (85), Expect = 0.053
Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 17/130 (13%)
Query: 1 DRLVQWCHGSPG-FISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGY---SLCHGV 56
D+ +WC G+PG +S L + K Y D + ++ G SLCHG
Sbjct: 831 DKFTRWCSGAPGILVSRLLLK------KIYDDESIDREIQQALKTIINNGLGNDSLCHGD 884
Query: 57 AGNAYAFLTAYHTTHAEEQMYRALCFANWVT------GYNKHEDTTPDRPYSLYEGKVGV 110
G L E + A AN + G N+ + + L G G+
Sbjct: 885 FGIIEVLLHYAKILSDSELLESANKLANELVSKAITYGINQ-GLNHANESFGLMNGVTGI 943
Query: 111 AFFLLDILKP 120
+ LL I P
Sbjct: 944 GYSLLRISSP 953
>gnl|CDD|240110 cd04793, LanC, LanC is the cyclase enzyme of the lanthionine
synthetase. Lanthinoine is a lantibiotic, a unique class
of peptide antibiotics. They are ribosomally synthesized
as precursor peptides and then post-translationally
modified to contain thioether cross-links called
lanthionines (Lans) or methyllanthionines (MeLans) in
addition to 2,3-didehydroalanine (Dha) and
(Z)-2,3-didehydrobutyrine (Dhb). These unusual amino
acids are introduced by the dehydration of serine and
threonine residues, followed by thioether formation via
addition of cysteine thiols, catalysed by LanB and LanC
or LanM. LanC, the cyclase component, is a zinc
metalloprotein, whose bound metal has been proposed to
activate the thiol substrate for nucleophilic addition.
Length = 382
Score = 52.0 bits (125), Expect = 6e-07
Identities = 84/494 (17%), Positives = 138/494 (27%), Gaps = 168/494 (34%)
Query: 242 YVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIY 301
G G A+ + T D Y ++ + + ++L L +
Sbjct: 1 SHGAPGIALLLSELAKHTKDEGYWERVHQYLSKALNYLLSL------------------- 41
Query: 302 KALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKS-VNIEA 360
+ L G AG ++LL ++ + K +
Sbjct: 42 -----------------GYSSSL-----------FSGAAGVAFALLILSDNGKRYQELLE 73
Query: 361 SL---IRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLT 417
SL I+ +V L K P Y G++GI LL +
Sbjct: 74 SLDELIKAIVRRRLE------DAKSGEPPTPTN------YDVISGLSGIGRYLLLRH--- 118
Query: 418 DKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDK 477
E D+ + + L L D + + + +
Sbjct: 119 --EPDSELLREILDYLV------YLTEPLNQDITLYIWSEN------------QPSETES 158
Query: 478 KYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVK 537
K + N G AHG+ G L L + KER V
Sbjct: 159 KEF-----PEGHI---------------NL-GLAHGIAGPLALLALA-----KERGIRVD 192
Query: 538 PTLDAL-------------------------LDETFPSGNLKSSHGSDSDRLVQWCHGSP 572
L+A+ E + D+ WC+G+P
Sbjct: 193 GQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDA-----WCYGTP 247
Query: 573 GFISLLQVAYETYNDKKYLD-------ALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFL 625
G LQ+A + +D+K + A LK + +LCHG++G + F
Sbjct: 248 GIARALQLAGKALDDQKLQEAAEKILKAALKDKKQLSK----LISPTLCHGLAGLLFIFY 303
Query: 626 TAYHTTHAEEQMYRALC--------FANW--VTGYNKHEDTTPDRPYS----LYEGKVGV 671
Y T+ + AL + G+ E+TT + L EG G+
Sbjct: 304 LLYKDTN-TNEFKSALEYLLNQIISSYSEEEPFGFKDIEETTGSIEWLDDSGLLEGAAGI 362
Query: 672 AFFLLDILKPTNAK 685
A LL
Sbjct: 363 ALTLLSYYNGEIPD 376
Score = 43.1 bits (102), Expect = 4e-04
Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 26/140 (18%)
Query: 6 WCHGSPGFISLLQVAYETYNDKKYLD-------ALLKSSDNVWHAGLLRKGYSLCHGVAG 58
WC+G+PG LQ+A + +D+K + A LK + +LCHG+AG
Sbjct: 242 WCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQLSK----LISPTLCHGLAG 297
Query: 59 NAYAFLTAYHTTHAEEQMYRALC--------FANW--VTGYNKHEDTTPDRPYS----LY 104
+ F Y T+ + AL + G+ E+TT + L
Sbjct: 298 LLFIFYLLYKDTN-TNEFKSALEYLLNQIISSYSEEEPFGFKDIEETTGSIEWLDDSGLL 356
Query: 105 EGKVGVAFFLLDILKPTNAK 124
EG G+A LL
Sbjct: 357 EGAAGIALTLLSYYNGEIPD 376
>gnl|CDD|240108 cd04791, LanC_SerThrkinase, Lanthionine synthetase C-like domain
associated with serine threonine kinases. Some members
of this subgroup lack the zinc binding site and the
active site residues, and therefore are most likely
inactive. The function of this domain is unknown.
Length = 321
Score = 36.9 bits (86), Expect = 0.031
Identities = 68/293 (23%), Positives = 94/293 (32%), Gaps = 42/293 (14%)
Query: 414 NVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYET 473
VL + K D LL E + N+ + G L G +LL+ A +
Sbjct: 51 WVLIELGHPARAKALFDTLLDEPSANLNIDLASGLAGIGLALLYFARTGDPALLEAAAKI 110
Query: 474 YNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGI-LFTLLKSNVLTDKER 532
+ L L+ D + W D+ +G HG GI LF L D
Sbjct: 111 A---ELLAEALERGDPALLWPDF-------DRVDHGLLHGWAGIALFLLRLYKATGDSRY 160
Query: 533 DTLVKPTLDALLDETF--PSGNLKSSHGSDSDRLV-QWCHGSPGFISLLQVAYETYNDKK 589
L + LD L G L+ G RL+ C GS G L+ DK+
Sbjct: 161 LELAEEALDKELARAVVDDGGLLQVDEG---ARLLPYLCSGSAGLGLLMLRLEAITGDKR 217
Query: 590 YLDALLKSSDNVWHAGLLRKGY---SLCHGVSG-----NAYAFLTAY-HTTHAEEQMYRA 640
+ D D + HA L Y L G +G N A A E++
Sbjct: 218 WRDEA----DGIAHA-ALSSCYANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALY 272
Query: 641 LCFAN------WVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKFP 687
L G +T L G G+ FLL +L + P
Sbjct: 273 LIATADEIEGPVFPGDQGLRIST-----DLATGTAGILLFLLRLLTRARSWLP 320
Score = 32.7 bits (75), Expect = 0.55
Identities = 31/129 (24%), Positives = 40/129 (31%), Gaps = 25/129 (19%)
Query: 6 WCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGY---SLCHGVAG---- 58
C GS G L+ DK++ D D + HA L Y L G AG
Sbjct: 195 LCSGSAGLGLLMLRLEAITGDKRWRDEA----DGIAHA-ALSSCYANPGLFSGTAGLGAH 249
Query: 59 -NAYAFLTAY-HTTHAEEQMYRALCFAN------WVTGYNKHEDTTPDRPYSLYEGKVGV 110
N A A E++ L G +T L G G+
Sbjct: 250 LNDLAAEGDNALYKAAAERLALYLIATADEIEGPVFPGDQGLRIST-----DLATGTAGI 304
Query: 111 AFFLLDILK 119
FLL +L
Sbjct: 305 LLFLLRLLT 313
>gnl|CDD|215139 PLN02250, PLN02250, lipid phosphate phosphatase.
Length = 314
Score = 33.4 bits (76), Expect = 0.33
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 19/98 (19%)
Query: 498 CEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGN----- 552
Y + ++ Y H + G+LF++L + V+TD +D + +P D FP G
Sbjct: 84 LVYYFIRRDVYDLHHAILGLLFSVLITGVITDAIKDAVGRPRPD-FFWRCFPDGKGVFHP 142
Query: 553 -------------LKSSHGSDSDRLVQWCHGSPGFISL 577
+K H S W GF+SL
Sbjct: 143 VTTDVLCTGAKSVIKEGHKSFPSGHTSWSFAGLGFLSL 180
Score = 33.0 bits (75), Expect = 0.51
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 385 VPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSG 440
V L Y + ++ Y H + G+LF++L + V+TD +D + +P D FP G
Sbjct: 82 VILVYYFIRRDVYDLHHAILGLLFSVLITGVITDAIKDAVGRPRPD-FFWRCFPDG 136
>gnl|CDD|178332 PLN02731, PLN02731, Putative lipid phosphate phosphatase.
Length = 333
Score = 32.7 bits (74), Expect = 0.55
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 394 KNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRL 453
++ Y H V G+L+++L + VLTD ++ + +P D FP G K+ + S D +
Sbjct: 110 RDVYDLHHAVLGLLYSVLVTAVLTDAIKNAVGRPRPD-FFWRCFPDG--KALYDSLGDVI 166
Query: 454 VQWCHG 459
CHG
Sbjct: 167 ---CHG 169
Score = 32.7 bits (74), Expect = 0.60
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 505 KNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRL 564
++ Y H V G+L+++L + VLTD ++ + +P D FP G K+ + S D +
Sbjct: 110 RDVYDLHHAVLGLLYSVLVTAVLTDAIKNAVGRPRPD-FFWRCFPDG--KALYDSLGDVI 166
Query: 565 VQWCHGSPGFI 575
CHG I
Sbjct: 167 ---CHGDKSVI 174
>gnl|CDD|176167 cd08478, PBP2_CrgA, The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA, contains the
type 2 periplasmic binding domain. This CD represents
the substrate binding domain of LysR-type
transcriptional regulator (LTTR) CrgA. The LTTRs are
acting as both auto-repressors and activators of target
promoters, controlling operons involved in a wide
variety of cellular processes such as amino acid
biosynthesis, CO2 fixation, antibiotic resistance,
degradation of aromatic compounds, nodule formation of
nitrogen-fixing bacteria, and synthesis of virulence
factors, to name a few. In contrast to the tetrameric
form of other LTTRs, CrgA from Neisseria meningitides
assembles into an octameric ring, which can bind up to
four 63-bp DNA oligonucleotides. Phylogenetic cluster
analysis further showed that the CrgA-like regulators
form a subclass of the LTTRs that function as octamers.
The CrgA is an auto-repressor of its own gene and
activates the expression of the mdaB gene which coding
for an NADPH-quinone reductase and that its action is
increased by MBL (alpha-methylene-gamma-butyrolactone),
an inducer of NADPH-quinone oxidoreductase. The
structural topology of this substrate-binding domain is
most similar to that of the type 2 periplasmic binding
proteins (PBP2), which are responsible for the uptake of
a variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis.
Length = 199
Score = 31.5 bits (72), Expect = 1.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 113 FLLDILKPTNAKWNQEYPNINIE----NLIAHLMRERTD 147
F+L +L P AK+ + YP+I +E I L+ +TD
Sbjct: 13 FVLHLLAPLIAKFRERYPDIELELVSNEGIIDLIERKTD 51
>gnl|CDD|227708 COG5421, COG5421, Transposase [DNA replication, recombination, and
repair].
Length = 480
Score = 30.5 bits (69), Expect = 3.3
Identities = 34/171 (19%), Positives = 52/171 (30%), Gaps = 38/171 (22%)
Query: 163 IKTARSVKMETKHSSRHHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTR--- 219
IKT + +K + + N + I SF ++V AT+
Sbjct: 186 IKTIQKLKSVLVKDEVYLV--------ADKGFNSDNNIKNIGSKLSFISRVPATIAEAKE 237
Query: 220 -------LIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQR-----THDSKYLDK 267
L E VY G +F Y + T ++ +
Sbjct: 238 LLHADLYLKTLKSDERG---SPY-GTKVVYGGVGQLWVFLLSYKLQKKEEQTLRTRIEKE 293
Query: 268 AQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLK 318
+K E+SL+ LK R F A K K SSV+ L+
Sbjct: 294 LEKA-EKSLEKLKGREF----------NCEKDARIAAEKILKDYSSVEFLE 333
>gnl|CDD|240416 PTZ00432, PTZ00432, falcilysin; Provisional.
Length = 1119
Score = 30.2 bits (68), Expect = 4.8
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 532 RDTLVK------PTLDALLDET----FPSGNLKSSHGSDSDRLVQWCHGSPGFISLLQVA 581
++TLV +++ L+E NL + DS+ L S F+ L +
Sbjct: 841 KETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKL-SS 899
Query: 582 YETYNDKKYLDALLKSSDNVWHAGLLRKGY 611
ND K SSD VW +L K
Sbjct: 900 TFKENDNK-------SSDKVWVKEVLDKKL 922
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like.
Length = 109
Score = 28.0 bits (63), Expect = 6.6
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 17/111 (15%)
Query: 217 LTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSL 276
L R +E I + + T+ A D++ L+ I++++
Sbjct: 1 LERAVEYILNTQNPDGSWSYSSGGDVSVTAALAR----ALALAGDARVLEA----IKKAV 52
Query: 277 KNLKNR-----RFSFLNGDAGP----IAVSALIYKALGKQEKLESSVQKLK 318
+ L ++ F + G+ V+ LIY G EKLE V+ +
Sbjct: 53 EWLLDQQQEDGGFGYDGGEYAYSTATYIVALLIYGIAGDDEKLERGVEWIL 103
>gnl|CDD|219421 pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 88.
Unsaturated glucuronyl hydrolase catalyzes the
hydrolytic release of unsaturated glucuronic acids from
oligosaccharides (EC:3.2.1.-) produced by the reactions
of polysaccharide lyases.
Length = 342
Score = 29.3 bits (66), Expect = 7.9
Identities = 27/145 (18%), Positives = 42/145 (28%), Gaps = 22/145 (15%)
Query: 456 WCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVT 515
W +G +L AYE D YLD D+F + K Y +
Sbjct: 29 WTNGV-FLYGMLL-AYEYTGDDAYLDYAKAWVDSF---------IDEGGKPYELDHIDIG 77
Query: 516 GILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQ----WCHGS 571
L L + +D + L D + ++S G + W G
Sbjct: 78 LTLLDLYE------LTKDERYRKAALELADWVLATPP-RTSEGGFWHKKKYPYQMWLDGL 130
Query: 572 PGFISLLQVAYETYNDKKYLDALLK 596
L + + KY D +
Sbjct: 131 FMAGPFLAKLGKLTGEPKYYDEAIY 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.407
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,374,092
Number of extensions: 3445944
Number of successful extensions: 3103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2943
Number of HSP's successfully gapped: 73
Length of query: 692
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 588
Effective length of database: 6,324,786
Effective search space: 3718974168
Effective search space used: 3718974168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)