RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13779
(692 letters)
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein;
2.60A {Homo sapiens} PDB: 3e73_A*
Length = 411
Score = 209 bits (533), Expect = 4e-61
Identities = 116/360 (32%), Positives = 189/360 (52%), Gaps = 21/360 (5%)
Query: 176 SSRHHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFR 235
+ R N Y ++ + L P F ++ + L++ ++ +++D
Sbjct: 14 AQRAFPNPYADYNKSLAEGYFDAAGR---LTPEFSQRLTNKIRELLQQMERGLKSADP-- 68
Query: 236 DHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIA 295
D + Y G +G A+ Y Y D YL A +++SL L R +FL GDAGP+A
Sbjct: 69 -RDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLA 127
Query: 296 VSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKS 355
V+A++Y + +++ E + +L HL + P+E+LYGR GY+Y+LLFVNK+
Sbjct: 128 VAAVLYHKMNNEKQAEDCITRLI----HLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGV 183
Query: 356 VNIEASLIRQVVDSILRSGQNLSARKK--SRVPLEYEWHDKNYYGAAHGVTGILFTLLKS 413
I S I+Q+ ++IL SG+NL+ ++ ++ PL YEW+ + Y GAAHG+ GI + L++
Sbjct: 184 EKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQP 243
Query: 414 N-VLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYE 472
+ ++ + +LVKP++D + FPSGN G + D LV WCHG+PG +L AY+
Sbjct: 244 SLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYK 303
Query: 473 TYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKER 532
+ ++KYL + +D V W +G K YG HG G + L LT +
Sbjct: 304 VFREEKYLCDAYQCAD--VIWQYG------LLKKGYGLCHGSAGNAYAFLTLYNLTQDMK 355
Score = 196 bits (499), Expect = 2e-56
Identities = 106/397 (26%), Positives = 167/397 (42%), Gaps = 44/397 (11%)
Query: 307 QEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQV 366
++L + +++L + G AG L + L
Sbjct: 45 SQRLTNKIRELLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYL-QLAHGY 103
Query: 367 VDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVK 426
V L K G G L + E+
Sbjct: 104 VKQSLNC------------------LTKRSITFLCGDAGPLAVAAVLYHKMNNEKQ---- 141
Query: 427 PTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKS 486
+ + + ++ +G G+ L + + +K + ++
Sbjct: 142 --AEDCITRLIHLNKIDPHAPNE------MLYGRIGYIYALLFVNKNFGVEKIPQSHIQQ 193
Query: 487 ------------SDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSN-VLTDKERD 533
+ + YEW+ + Y GAAHG+ GI + L++ + ++ +
Sbjct: 194 ICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKLH 253
Query: 534 TLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDA 593
+LVKP++D + FPSGN G + D LV WCHG+PG I +L AY+ + ++KYL
Sbjct: 254 SLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCD 313
Query: 594 LLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKH 653
+ +D +W GLL+KGY LCHG +GNAYAFLT Y+ T + +YRA FA W Y +H
Sbjct: 314 AYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEH 373
Query: 654 EDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKFPGYE 690
TPD P+SL+EG G +FL D+L PT A+FP +E
Sbjct: 374 GCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFE 410
Score = 133 bits (335), Expect = 8e-34
Identities = 63/124 (50%), Positives = 82/124 (66%)
Query: 1 DRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNA 60
D LV WCHG+PG I +L AY+ + ++KYL + +D +W GLL+KGY LCHG AGNA
Sbjct: 282 DLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNA 341
Query: 61 YAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKP 120
YAFLT Y+ T + +YRA FA W Y +H TPD P+SL+EG G +FL D+L P
Sbjct: 342 YAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVP 401
Query: 121 TNAK 124
T A+
Sbjct: 402 TKAR 405
Score = 40.2 bits (93), Expect = 0.002
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 244 GTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN------RRFSFLNGDAG 292
G++G A + Y T D KYL +A K E L+ ++ FS G AG
Sbjct: 336 GSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAG 390
Score = 34.4 bits (78), Expect = 0.11
Identities = 29/289 (10%), Positives = 77/289 (26%), Gaps = 34/289 (11%)
Query: 90 NKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKWNQEYPNINIENLIAHLMRERTDYD 149
+ + R + Y G G+A L + + + ++ + L + +
Sbjct: 60 ERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFL 119
Query: 150 T-----DYKSLMLFH--SYEIKTARSVKMETKHSSRHHQNKYKYGEGEKSKLFTVENKEK 202
+ +L+H + E + + + + G ++ + K
Sbjct: 120 CGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNK 179
Query: 203 IVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHD-----------YSVYVGTSGQAMF 251
+ I F G +G +
Sbjct: 180 NFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYY 239
Query: 252 YYIYYQRTHDSKYLDKAQKLIE-------------RSLKNLKNRRFSFLNGDAGPIAVSA 298
+ K + ++ + + ++ + +G G I +
Sbjct: 240 LMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLI 299
Query: 299 LIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLL 347
YK +++ L + Q + + + + + +G AG Y+ L
Sbjct: 300 QAYKVFREEKYLCDAYQCADVIWQYGLLKKGYG---LCHGSAGNAYAFL 345
Score = 32.9 bits (74), Expect = 0.40
Identities = 22/181 (12%), Positives = 41/181 (22%), Gaps = 35/181 (19%)
Query: 6 WCHGSPGFISLLQVAYETYNDKKYLDALLK--------------------SSDNVWHAGL 45
+G G+I L + + +K + ++ + + +
Sbjct: 163 MLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWY 222
Query: 46 LRKGYSLCHGVAGNAYAFLTAYHTTHAEEQMYRALCFANWVT-------GYNKHEDTTPD 98
HG+AG Y + + ++V Y D
Sbjct: 223 QEYYVGAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRD 282
Query: 99 RPYSLYEGKVGVAFFLLDILKPTNAKWNQEYPNINIENLIAHLMRERTDYDTDYKSLMLF 158
G GV + L+ K + Y K L
Sbjct: 283 LLVHWCHGAPGVIYMLIQAYK--------VFREEKYLCDAYQCADVIWQYGLLKKGYGLC 334
Query: 159 H 159
H
Sbjct: 335 H 335
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel,
biosynthetic protein; 2.21A {Lactococcus lactis subsp}
SCOP: a.102.6.1 PDB: 2g02_A
Length = 409
Score = 147 bits (372), Expect = 1e-38
Identities = 68/445 (15%), Positives = 126/445 (28%), Gaps = 74/445 (16%)
Query: 261 DSKYLDKAQKLIERSLKNLKNRRF---SFLNGDAGPIAVSALIYKALGKQEKLESSVQKL 317
+ ER+ KN +N F + G G I + A + + + +
Sbjct: 5 KRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYI 64
Query: 318 KALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNL 377
+ + L + G AG S+L + + + + ++DS+ R +
Sbjct: 65 EYIVSKLSTYGLL-TGSLYSGAAGIALSILHLREDDE-------KYKNLLDSLNRYIEYF 116
Query: 378 SARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETF 437
K LE Y G++GIL LL N D++ D L ++ L + T
Sbjct: 117 VREKIEGFNLENIT--PPDYDVIEGLSGILSYLLLIN---DEQYDDLKILIINFLSNLTK 171
Query: 438 PSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGE 497
+ L S + +++ Q E
Sbjct: 172 ENNGLISLYIKSENQMSQS----------------------------------------E 191
Query: 498 CEYEWHDKNYYGAAHGVTGILFTLLKS--NVLTDKERDTLVKPTLDALLDETFPSGN--- 552
E G AHG+ G+ L + +++ + ++ +
Sbjct: 192 SEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFL 251
Query: 553 -----------LKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNV 601
+ S WC+G PG L ++ ++D K ++
Sbjct: 252 WKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESA 311
Query: 602 WHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRP 661
L Y +CHG SG + ++ F + +
Sbjct: 312 MQRKLGIDSYMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEEYG--DESG 369
Query: 662 YSLYEGKVGVAFFLLDILKPTNAKF 686
EG G L N +
Sbjct: 370 TGFLEGISGCILVLSKFEYSINFTY 394
Score = 136 bits (342), Expect = 9e-35
Identities = 51/377 (13%), Positives = 122/377 (32%), Gaps = 44/377 (11%)
Query: 217 LTRLIEDIDSEYET-----SDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKL 271
+ R +E I ++++ + F + ++ G G + + + Y K
Sbjct: 4 IKRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNY 63
Query: 272 IERSLKNLKNRR---FSFLNGDAGPIAVSALIYKALGKQEKLESSVQKL------KALAP 322
IE + L S +G AG + + K + L S+ + + +
Sbjct: 64 IEYIVSKLSTYGLLTGSLYSGAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEG 123
Query: 323 HLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKK 382
++ + +++ G +G L LL +N +++ +I + + + +S K
Sbjct: 124 FNLENITPPDYDVIEGLSGILSYLLLINDEQYD-DLKILIINFLSNLTKENNGLISLYIK 182
Query: 383 S-----RVPLEYEWHDKNYYGAAHGVTGILFTLLKS--NVLTDKERDTLVKPTLDALLHE 435
S + E G AHG+ G+ L + +++ + ++ +
Sbjct: 183 SENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKF 242
Query: 436 TFPSGN--------------LKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLD 481
+ S WC+G PG + L ++ ++D
Sbjct: 243 ELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVD 302
Query: 482 ALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLD 541
K + + + + + Y HG +G++ L + ++ +
Sbjct: 303 KAEKILE--SAM-----QRKLGIDS-YMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFN 354
Query: 542 ALLDETFPSGNLKSSHG 558
++ +S G
Sbjct: 355 VNSEQILEEYGDESGTG 371
Score = 113 bits (284), Expect = 3e-27
Identities = 20/125 (16%), Positives = 35/125 (28%), Gaps = 2/125 (1%)
Query: 1 DRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNA 60
WC+G PG L ++ ++D K ++ L Y +CHG +G
Sbjct: 272 FIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDSYMICHGYSGLI 331
Query: 61 YAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKP 120
+ ++ F + + EG G L
Sbjct: 332 EICSLFKRLLNTKKFDSYMEEFNVNSEQILEEYG--DESGTGFLEGISGCILVLSKFEYS 389
Query: 121 TNAKW 125
N +
Sbjct: 390 INFTY 394
Score = 57.9 bits (139), Expect = 5e-09
Identities = 56/359 (15%), Positives = 120/359 (33%), Gaps = 28/359 (7%)
Query: 8 HGSPGFISLLQVAYETYNDKKYLD---ALLKSSDNVWHAGLLRKGYSLCHGVAGNAYAFL 64
G PG I +L N K Y ++ + + SL G AG A + L
Sbjct: 35 TGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSK-LSTYGLLTGSLYSGAAGIALSIL 93
Query: 65 TAYHTTHAEEQMY----RALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKP 120
+ + R + + + + Y + EG G+ +LL I
Sbjct: 94 HLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLINDE 153
Query: 121 TNAKWNQEYPNINIENLIAHLMRERTDYDTDYKSLMLFHSYEIKTARSVKMETKHSSRHH 180
I N +++L +E + Y + + + + + H
Sbjct: 154 QYDDLKIL-----IINFLSNLTKENNGLISLY--IKSENQMSQSESEMYPLGCLNMGLAH 206
Query: 181 ---------QNKYKYGEGEKSKLFTVENKEKIVLHPSFETK-VWATLTRLIEDIDSEYET 230
+ G ++ L ++ I E K + L+ D + +
Sbjct: 207 GLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKV 266
Query: 231 SDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRR-FSFLNG 289
+ + G G ++ Y + ++DKA+K++E +++ + +G
Sbjct: 267 IREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDSYMICHG 326
Query: 290 DAGPIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDE-ILYGRAGYLYSLL 347
+G I + +L + L +K +S +++ + +++ D L G +G + L
Sbjct: 327 YSGLIEICSLFKRLLN-TKKFDSYMEEFNVNSEQILEEYGDESGTGFLEGISGCILVLS 384
Score = 42.5 bits (99), Expect = 3e-04
Identities = 49/440 (11%), Positives = 119/440 (27%), Gaps = 88/440 (20%)
Query: 25 NDKKYLDALLKSSDNVWHAGLLR---KGYSLCHGVAGNAYAFLTAYHTTHAEEQMYRALC 81
N K+ ++ ++ D +L G+ G + +++ +
Sbjct: 3 NIKRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKID- 61
Query: 82 FANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKWNQEYPNINIENLIAHL 141
N++ T SLY G G+A + HL
Sbjct: 62 --NYIEYIVSKLSTYGLLTGSLYSGAAGIALSI------------------------LHL 95
Query: 142 MRERTDYDTDYKSLMLFHSYEIKTARSVKMETKHSSRHHQNKYKYGEGEKSKLFTVENKE 201
+ Y SL + Y ++ K+E + Y EG L +
Sbjct: 96 REDDEKYKNLLDSLNRYIEYFVRE----KIEGFNLENITPPDYDVIEGLSGILSYLLLIN 151
Query: 202 KIVLHPSFETKVWATLTRLIEDIDSE----YETSDKFRDHDYSVYV----------GTSG 247
+ + + L+ L ++ + ++ ++ + +Y G +G
Sbjct: 152 DE-QYDDLKILIINFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAG 210
Query: 248 QAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQ 307
+ + + ++ A +++ + + + A K
Sbjct: 211 VGCILAYAHIKGYSNEASLSA---LQKIIFIYEKFELERKKQFLWKDGLVADELK----- 262
Query: 308 EKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVV 367
++ S I D YG G L+ + + +++
Sbjct: 263 -------------KEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVD-KAEKIL 308
Query: 368 DSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKP 427
+S ++ + + Y HG +G++ L + ++
Sbjct: 309 ESAMQRKLGI----------------DS-YMICHGYSGLIEICSLFKRLLNTKKFDSYME 351
Query: 428 TLDALLHETFPSGNLKSSHG 447
+ + +S G
Sbjct: 352 EFNVNSEQILEEYGDESGTG 371
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.1 bits (168), Expect = 3e-12
Identities = 82/600 (13%), Positives = 159/600 (26%), Gaps = 192/600 (32%)
Query: 171 METKHSSRHHQNK---------------YKYGEGEKSKLFTVENKEKIVLHPSFETKVWA 215
M+ + +Q K K + + + E + I++ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG--- 63
Query: 216 TLTRLIEDI--DSEYETSDKF----RDHDYS--------VYVGTSGQAMFYYIYYQRTHD 261
T + + E KF +Y S Y R ++
Sbjct: 64 --TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 262 -----SKY----LDKAQKLIERSLKNLKNRRFSFLNGDAGP----IAVSAL--------- 299
+KY L KL ++L L+ + ++G G +A+
Sbjct: 122 DNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 300 ---IY-KALGKQEKLESSVQKLKALAPHL-------VDLRSDIPDEI---------LYGR 339
I+ L E+ ++ L+ L + D S+I I L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 340 AGYLYSLLFV-----NKHIKSVNIEASLI-----RQVVDSILRSGQNLSARKKSRVPLEY 389
Y LL + K + N+ ++ +QV D LSA + + L++
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-------LSAATTTHISLDH 293
Query: 390 EWHDKNYYGAAHGVT-----GILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKS 444
+ +T +L L P +++ E+ G
Sbjct: 294 H---------SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL--- 341
Query: 445 SHGSDSDRLVQWCH-GSPGFTSLLQVAYE---TYNDKKYLDALLKSSDNFVSWSFGE--- 497
W H T++++ + +K D L V F
Sbjct: 342 ------ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL------SV---FPPSAH 386
Query: 498 ------CEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSG 551
W D ++ L L +K+ L+
Sbjct: 387 IPTILLSLI-WFDVIKS-----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 552 NLKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRK-G 610
N + H +V + YN K D+
Sbjct: 441 NEYALH----RSIV-----------------DHYNIPKTFDS--------DDLIPPYLDQ 471
Query: 611 YSLCHGVSGNAYAFLTAYHTTHAEE----QMYRALCFAN--WVTGYNKHEDTTPDRPYSL 664
Y Y+ + +H + E ++R + F + ++ +H+ T + S+
Sbjct: 472 YF---------YSHI-GHHLKNIEHPERMTLFRMV-FLDFRFLEQKIRHDSTAWNASGSI 520
Score = 61.8 bits (149), Expect = 7e-10
Identities = 83/542 (15%), Positives = 153/542 (28%), Gaps = 138/542 (25%)
Query: 15 SLLQVAYETYNDKKYLDALLKSSDNVW--------HAGL--LRKG-YSLCHGVAGNAYAF 63
S++ Y D+ Y D + + NV L LR L GV G+ +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 64 LTAYHTTHAEEQMYRALCFA-NWVT-GYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPT 121
+ ++ + F W+ +T + L D +
Sbjct: 166 VAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH--SS 221
Query: 122 NAKWNQEYPNINIENLIAHLMRERT----D--YDT------DYKSLMLFHSYEIKTARSV 169
N K + L+ E + + +L + + +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 170 K-METKHSSRHHQNKYKYGEGEKSKLFT--VENK------EKIVLHPSFETKVWATLTRL 220
T H S H + E L ++ + E + +P + + +
Sbjct: 282 SAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE---SI 337
Query: 221 IEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLK 280
+ + T D + + DK +IE SL L+
Sbjct: 338 RDGLA----TWD-------------------NWKHVN-------CDKLTTIIESSLNVLE 367
Query: 281 N-------RRFSFLNGDAG-PIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIP 332
R S A P + +LI+ + K + + V KL + LV+ + P
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYS--LVEKQ---P 421
Query: 333 DEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWH 392
E + S+ K + E +L R +VD +P ++
Sbjct: 422 KESTI----SIPSIYLELK--VKLENEYALHRSIVDHY-------------NIPKTFDSD 462
Query: 393 DK------NYY---------GAAHGVTGILFTLLKSNV--LTDKERDTLVKPTLDALLHE 435
D Y+ H LF ++ + L K R +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 436 TFPSGNLKSSHGSDSD----RLV-----------QWCHGSPGFTSLLQVAYETYNDKKYL 480
T + D+D RLV + S +T LL++A ++ +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK-YTDLLRIALMAEDEAIFE 581
Query: 481 DA 482
+A
Sbjct: 582 EA 583
Score = 61.4 bits (148), Expect = 7e-10
Identities = 97/658 (14%), Positives = 174/658 (26%), Gaps = 213/658 (32%)
Query: 27 KKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNAYAFLTAYHTTHAEEQMYRALCFANWV 86
K+ +D ++ S D V +G LR ++L F+ Y ++
Sbjct: 48 KEEIDHIIMSKDAV--SGTLRLFWTLLSKQEEMVQKFVEE-----VLRINY------KFL 94
Query: 87 TGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKWNQEYPNIN--------IENLI 138
K E P +Y + + + N Q Y + +N++
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 139 AHLM-------------RERTDYDTDYKSLMLFHSY-----EIKTARSV---------KM 171
+ + M F + + +V ++
Sbjct: 155 IDGVLGSGKTWVALDVCL-----SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 172 ETKHSSR-HHQNKYKY----GEGEKSKLFTVENKEK--IVLHPSFETKVWA-------TL 217
+ +SR H + K + E +L + E +VL K W L
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 218 --TRLIEDID--SEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLD-KAQKL- 271
TR + D S T+ DH +++ KYLD + Q L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----------LKYLDCRPQDLP 319
Query: 272 -------------IERSLKNLKNR--RFSFLNGDAGPIAVSALIYKALGKQEKLESSVQK 316
I S+++ + +N D +ESS+
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--------------LTTIIESSLNV 365
Query: 317 LKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQN 376
L+ P E R + +F S +I L+ S++
Sbjct: 366 LE-------------PAEY---RKMFDRLSVFP----PSAHIPTILL-----SLI----- 395
Query: 377 LSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHET 436
W D ++ L L +K+ L
Sbjct: 396 --------------WFDVIKS-----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 437 FPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYL---DALLKSSDNFVSW 493
N + H +V + YN K D + D +
Sbjct: 437 VKLENEYALH----RSIV-----------------DHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 494 SFGECEYEWHDKNYYGAAHGVTGILFTL-------LKSNVLTDKERDTLVKPTLDALLDE 546
G + H KN H LF + L+ + D L+ L
Sbjct: 476 HIG---H--HLKN---IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 547 TFPSGNLKSSHGSDSDRLV-----------QWCHGSPGFISLLQVAYETYNDKKYLDA 593
F + + +RLV + S + LL++A ++ + +A
Sbjct: 528 KFYKPYICDNDPKY-ERLVNAILDFLPKIEENLICSK-YTDLLRIALMAEDEAIFEEA 583
Score = 28.7 bits (63), Expect = 9.4
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 20/102 (19%)
Query: 588 KKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWV 647
K+ +D ++ S D V +G LR ++L F+ Y ++
Sbjct: 48 KEEIDHIIMSKDAV--SGTLRLFWTLLSKQEEMVQKFVEE-----VLRINY------KFL 94
Query: 648 TGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKFPGY 689
K E P +Y + D L N F Y
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQR-------DRLYNDNQVFAKY 129
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.5 bits (167), Expect = 6e-12
Identities = 77/506 (15%), Positives = 143/506 (28%), Gaps = 168/506 (33%)
Query: 94 DTTPDRPYSLYEGKVGVAF----------------FLLDILKPTNAKWNQEYPNINIE-- 135
D RP +L G + F + +PT + P E
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 136 ----NLIAHLMRERTDYDTDY---KSLMLFHS-Y----EIKT-ARSV--KMETKHSSRHH 180
++ L+ D L F + Y +I A + + +T
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 181 --QNKYK--------YGEGEKSKLFTVENKEKIVLHPSF------ET------KVWAT-- 216
+N + + S LF + L F + ++ T
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 217 --LTRLIE--------------DIDSEY----------ETSDKFRDHDYSVYVGTSG--- 247
+ LI+ D + + E D DY + + S
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 248 ---QAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKAL 304
Q Y + KL+ + L++ G + + + I +
Sbjct: 242 GVIQLAHYVV-------------TAKLLGFTPGELRS-YLKGATGHSQGLVTAVAIAETD 287
Query: 305 GKQEKLESSVQKLKAL----------APHLVDLRSDIPDEILYGRAGY----L----YSL 346
+ S + + L P+ L I ++ L G L +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNT-SLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 347 LFVNKHIKSVN--------IEASLI---RQVV-----------DSILRSGQNLSARKKSR 384
V ++ N +E SL+ + +V + LR + S +SR
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 385 VP-----LEYEW---------HDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLD 430
+P L++ H A I L+K+NV + + + P
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSH-LLVPA--SDLINKDLVKNNVSFNAKD--IQIP--- 458
Query: 431 ALLHETFPSGNLKSSHGSDSDRLVQW 456
+++TF +L+ GS S+R+V
Sbjct: 459 --VYDTFDGSDLRVLSGSISERIVDC 482
Score = 50.0 bits (119), Expect = 3e-06
Identities = 76/459 (16%), Positives = 134/459 (29%), Gaps = 156/459 (33%)
Query: 268 AQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALG----KQEKLESSVQKLKALAPH 323
A +L E+ K L F D P + L+ K LG E + Q + L
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADDE-PTTPAELVGKFLGYVSSLVEPSKVG-QFDQVLNLC 87
Query: 324 LVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKS 383
L + + L G +I A + +L+ + K
Sbjct: 88 LTEFENCY----LEGN-----------------DIHA-----LAAKLLQENDTTLVKTKE 121
Query: 384 RVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLK 443
+ KNY A + + D K + AL
Sbjct: 122 LI--------KNYITARI--------------MAKRPFD---KKSNSALF---------- 146
Query: 444 SSHGSDSDRLV-----QWCHGSPG--FTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFG 496
+ G + +LV Q G+ F L + Y+TY+ + L+K S +S
Sbjct: 147 RAVGEGNAQLVAIFGGQ---GNTDDYFEEL-RDLYQTYHV--LVGDLIKFSAETLS---E 197
Query: 497 ECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSS 556
+ + G +L+ L + P D LL + P
Sbjct: 198 LIRTTLDAEKVFT--QG-----LNILE--WLENPSN----TPDKDYLL--SIP------- 235
Query: 557 HGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHG 616
+ P I ++Q+A+ Y+ K + G LR G
Sbjct: 236 --------ISC----P-LIGVIQLAH-------YV-VTAKLLG--FTPGELRSYLK---G 269
Query: 617 VSGNAYAFLTAYHTTHA------EEQMYRALCFANWVTGYNKHEDTTPD---RP----YS 663
+G++ +TA + +A+ ++ G +E P+ P S
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-GVRCYE-AYPNTSLPPSILEDS 327
Query: 664 LYEGK---------VGVAF-FLLDILKPTNAKFPGYEDI 692
L + + + D + TN+ P + +
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Score = 45.4 bits (107), Expect = 7e-05
Identities = 51/274 (18%), Positives = 86/274 (31%), Gaps = 92/274 (33%)
Query: 445 SHGS-DSDRLV---QWCHGS---PGFTSLLQVAYETY--NDK---------KYL------ 480
SHGS + LV + S F +L E + +D+ K+L
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 481 ---------DALLKSS-DNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDK 530
D +L F E Y + H + LL+ N T
Sbjct: 72 VEPSKVGQFDQVLNLCLTEF------ENCY-LEGND----IHALAA---KLLQENDTTLV 117
Query: 531 ERDTLVKPTLDALLDETFPSGNLKSS----HGSDSD-RLV-----QWCHGSP-GFISLLQ 579
+ L+K + A + P +S + + +LV Q G+ + L+
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ---GNTDDYFEELR 174
Query: 580 VAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYR 639
Y+TY+ + L+K S A L + T AE+ +
Sbjct: 175 DLYQTYHV--LVGDLIKFS-----AETLSE----------------LIRTTLDAEKVFTQ 211
Query: 640 ALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAF 673
L W+ + TPD+ Y L + ++
Sbjct: 212 GLNILEWLE----NPSNTPDKDYLLS---IPISC 238
Score = 40.4 bits (94), Expect = 0.002
Identities = 33/221 (14%), Positives = 68/221 (30%), Gaps = 82/221 (37%)
Query: 228 YETSDKFRD-------HDYSVY-------------------VGTSGQAM---FYYIYYQR 258
Y+TS +D H Y G G+ + + + ++
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 259 THDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAG---------P--IAVSALIYKALGKQ 307
D K K +K+ + N + ++F + G P + ++ L
Sbjct: 1696 IVDGK--LKTEKIFKE--INEHSTSYTF-RSEKGLLSATQFTQPALTLMEKAAFEDL--- 1747
Query: 308 EKLESSVQKLKALAPH----------------------LVDLR-----SDIP-DEILYGR 339
K + + A H +V R +P DE+ GR
Sbjct: 1748 -KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL--GR 1804
Query: 340 AGYLYSLLFVNKHIKSVNIEASLIRQVVDSIL-RSGQNLSA 379
+ Y ++ +N + + ++ VV+ + R+G +
Sbjct: 1805 SN--YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Score = 37.0 bits (85), Expect = 0.026
Identities = 28/154 (18%), Positives = 44/154 (28%), Gaps = 39/154 (25%)
Query: 33 LLKSSD---NVWHAG----LLRKGYSLCHGVAGN--AYAFLTAYHTTHAEEQMYRALCFA 83
L K+S +VW+ G+S+ V N + Y A+ F
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 84 NWVTGYNKHEDTTPDRPYSL----YEGKVGVAFFLLDILKPT-NAKWNQEYPNI-NIENL 137
V G K E + + + G+ L T Q P + +E
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGL-------LSATQFT---Q--PALTLMEKA 1742
Query: 138 IAHLMRERTDYDTDYKSLMLF--HS---YEIKTA 166
++ + D F HS Y A
Sbjct: 1743 AFEDLKSKGLIPADA----TFAGHSLGEY---AA 1769
Score = 32.7 bits (74), Expect = 0.46
Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 32/127 (25%)
Query: 594 LLKSSD---NVWHAG----LLRKGYSLCHGVSGN--AYAFLTAYHTTHAEEQMYRALCFA 644
L K+S +VW+ G+S+ V N + Y A+ F
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 645 NWVTGYNKHEDTTPDRPYSL----YEGKVGV---------AFFLLDI----------LKP 681
V G K E + + + G+ A L++ L P
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 682 TNAKFPG 688
+A F G
Sbjct: 1755 ADATFAG 1761
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.60A {Bacillus subtilis}
SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Length = 373
Score = 41.6 bits (97), Expect = 7e-04
Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 19/278 (6%)
Query: 6 WCHGSPGFISLLQVAYETYNDKKYLDALLKSSD-NVWHAG-LLRKGYSLCHGVAGNAYAF 63
+ G +L+ +E +K+Y + +D + G LL + L AG
Sbjct: 41 YHQGV-FLCGVLR-LWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAIQAGLILFP 98
Query: 64 LTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNA 123
L Y T E + A + N+ + ++ P
Sbjct: 99 L--YEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDGYPYQMWLDGLYMGG---PFAL 153
Query: 124 KWNQEYPNINIENLIAHLMRERTDYDTDYKSLMLFHSYEIKTARSVKMETKHSSRHHQNK 183
K+ + + + + D K+ + +H+++ E S +
Sbjct: 154 KYANLKQETELFDQVVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWAR 213
Query: 184 ----YKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDY 239
Y + + ++ + V + + + + ++ Y+ DK
Sbjct: 214 SIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDK--GDRS 271
Query: 240 SVYVGTSGQAMFYYIYYQRTH----DSKYLDKAQKLIE 273
++ +SG ++ Y + + D Y K +
Sbjct: 272 DNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQ 309
Score = 34.7 bits (79), Expect = 0.096
Identities = 25/204 (12%), Positives = 51/204 (25%), Gaps = 13/204 (6%)
Query: 456 WCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVT 515
+ G +L+ +E +K+Y + +D + G + + + A
Sbjct: 41 YHQGV-FLCGVLR-LWEATGEKRYFEYAKAYADLLI-DDNGNLLFRRDELDAIQAGL--- 94
Query: 516 GILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHGSPGFI 575
L T ER L +L + H + W G
Sbjct: 95 ----ILFPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDGYPYQM-WLDGLYMGG 149
Query: 576 SLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEE 635
+ + D ++ + K H T + E
Sbjct: 150 PFALKYANLKQETELFDQVVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPE 209
Query: 636 QMYRALCFANWVTGYNKHEDTTPD 659
R++ + +V + P
Sbjct: 210 FWARSIGW--YVMSLADMIEELPK 231
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 0.003
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
Query: 306 KQE--KLESSVQKLKA--LAPHLVDLRSDI 331
KQ KL++S+ KL A AP L +++ +
Sbjct: 19 KQALKKLQASL-KLYADDSAPALA-IKATM 46
Score = 32.6 bits (73), Expect = 0.21
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 10/37 (27%)
Query: 266 DKAQ-KLIERSLKNLKNRRFSFLNGDAGP-IAVSALI 300
+K K ++ SLK ++ D+ P +A+ A +
Sbjct: 18 EKQALKKLQASLK-----LYA---DDSAPALAIKATM 46
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology,
protein structure initiati midwest center for structural
genomics; 1.90A {Klebsiella pneumoniae subsp} PDB:
3qwt_A
Length = 382
Score = 37.3 bits (86), Expect = 0.015
Identities = 20/190 (10%), Positives = 47/190 (24%), Gaps = 17/190 (8%)
Query: 456 WCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVT 515
W HG G + Q Y+ D + D + + +
Sbjct: 68 WTHGV-GLYGIYQ-YYQQTGDIEMRDIIDRWFADRF----------AEGATTKNVNTMAP 115
Query: 516 GILFTLLKSNVLTDKER-DTLVKPTLDALLDE--TFPSGNLKSSHGSDSDRLVQWCHGSP 572
+ TL T + ++ + + E G ++ ++ + W
Sbjct: 116 FL--TLAYRFEETGRMAYLPWLESWAEWAMHEMPRTEQGGMQHMTLAEENHQQMWDDTLM 173
Query: 573 GFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTH 632
+ L + N +Y++ + R+ HG +
Sbjct: 174 MTVLPLAKIGKLLNRPQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWAR 233
Query: 633 AEEQMYRALC 642
+ +
Sbjct: 234 GNSWLTMVIP 243
Score = 34.3 bits (78), Expect = 0.13
Identities = 41/284 (14%), Positives = 81/284 (28%), Gaps = 28/284 (9%)
Query: 6 WCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNAYAFLT 65
W HG G + Q Y+ D + D + + + + G K + A+
Sbjct: 68 WTHGV-GLYGIYQ-YYQQTGDIEMRDIIDRWFADRFAEGATTKNVN--TMAPFLTLAYR- 122
Query: 66 AYHTTHAEEQMYRALCFANWV-TGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAK 124
+ T + +A W + E E + L + AK
Sbjct: 123 -FEETGRMAYLPWLESWAEWAMHEMPRTEQGGMQHMTLAEENHQQMWDDTLMMTVLPLAK 181
Query: 125 WNQEYPNINIENLIAHLMRERTDYDTDYKSLMLFHSYEIKTARSVKMETKHSSRHHQNKY 184
+ + D ++ + FH + + RH+ +
Sbjct: 182 IGKLLNRPQYVEEATYQFLLHVQNLMDRETGLWFHGW------------NYEGRHNFARA 229
Query: 185 KYGEGEKSKLFTVENKEKIVLHPSFET---KVWATLTRLIEDIDSEYETSDKFRD--HDY 239
++ G + + ++V P + L I + + S + D
Sbjct: 230 RWARGNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDP 289
Query: 240 SVYVGTSGQAMFYYIYYQRTH----DSKYLDKAQKLIERSLKNL 279
Y+ S A F Y + Y A+K I ++N+
Sbjct: 290 HSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNI 333
Score = 29.2 bits (65), Expect = 5.2
Identities = 5/38 (13%), Positives = 15/38 (39%)
Query: 249 AMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSF 286
+ + + +Y+++A ++NL +R
Sbjct: 176 VLPLAKIGKLLNRPQYVEEATYQFLLHVQNLMDRETGL 213
>3n6o_A Guanine nucleotide exchange factor;
phosphatidylinositol-4-phosphate, membrane, RAB, LCV, P
rabgef, signaling protein; 2.50A {Legionella
pneumophila} PDB: 3l0m_A
Length = 311
Score = 34.1 bits (77), Expect = 0.13
Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 15/198 (7%)
Query: 92 HEDTTPDRPYSLYEGK--VGVAFFLLDILKPTNAKW--NQEYPNINIENLIAHLMRERTD 147
+E TPD + + + K VG+ F+ D+ PT+ W N + + I L R
Sbjct: 115 NERATPDPDFKVGKSKILVGIMQFIKDVADPTSKIWMHNTKALMNHKIAAIQKLERSNNV 174
Query: 148 YDTDYKSLMLFHSYEIKTARSVKMETKHSSRHHQNKYKYGEGEKSKLFTVENKEKIVLHP 207
D +S++ + S K TK R H+ V+ K + +
Sbjct: 175 NDETLESVLSSKGENLSEYLSYKYATKDEGREHRYTAS-----TENFKNVKEKYQQMRGD 229
Query: 208 SFETKVWATLTRLIEDIDSEYETSDK----FRDHDYSVYVGTSGQAMFYYIYYQRTHDSK 263
+ +T++ A + + E +Y + GQ + + +T
Sbjct: 230 ALKTEILADFKDKLAEATDEQSLKQIVAELKSKDEYRIL--AKGQGLTTQLLGLKTSSVS 287
Query: 264 YLDKAQKLIERSLKNLKN 281
+K + S+K+ +
Sbjct: 288 SFEKMVEETRESIKSQER 305
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT
structural genomics, JCSG, protein structure initiative;
HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 445
Score = 33.2 bits (75), Expect = 0.27
Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 17/174 (9%)
Query: 456 WCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVT 515
+ G +++L+ A ET DK+Y D + + +
Sbjct: 82 YEWGV-TYSALIA-AAETTGDKRYTDYVQNRFRFLAEVAPHFKRVYEEKGKTDSQLLQIL 139
Query: 516 ---------GILFTLLKSNVLT-DKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLV 565
+ ++K + D L++ D ++++ + + + +
Sbjct: 140 TPHALDDAGAVCTAMIKLRLKDESLPVDGLIQNYFDFIINKEYRLADGTFARNRPQRNTL 199
Query: 566 QWCHG---SPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHG 616
W ++ + Y+ KYL +K + + HG
Sbjct: 200 -WLDDMFMGIPAVAQMS-RYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHG 251
>3e7j_A Heparinase II protein; alpha and beta lyase, alpha6/alpha6
incomplete toroid, sugar protein, lyase; HET: NAG GCU
GCD; 2.10A {Pedobacter heparinus} PDB: 3e80_A* 2fut_A*
2fuq_A*
Length = 749
Score = 32.0 bits (71), Expect = 0.87
Identities = 42/302 (13%), Positives = 84/302 (27%), Gaps = 11/302 (3%)
Query: 212 KVWATLTRLIEDIDSEYETS-DKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQK 270
KVWA + ++ ED FR + + + M Y T D K +A
Sbjct: 49 KVWADMIKMQEDWKPADIPEVKDFRFYFNQKGLTVRVELMALN--YLMTKDPKVGREAIT 106
Query: 271 LIERSLKNLKNRRFSFLNGDAG-PIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLRS 329
I +L+ + ++ G + A++Y Q K E + +KA L
Sbjct: 107 SIIDTLETATFKPAGDISRGIGLFMVTGAIVYDWCYDQLKPEEKTRFVKAFVRLAKMLEC 166
Query: 330 DIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEY 389
P G + + + ++ + ++ +
Sbjct: 167 GYPPVKDKSIVGAASEWMIMRDLLSVGIAIYDEFPEMYNLAAGRFFKEHLVARNWFYPSH 226
Query: 390 EWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSD 449
+H + + + + + L +++ P G + + D
Sbjct: 227 NYHQGMSALNVRFTNDLFALWILDRMGAGNVFNPGQQFILYDAIYKRRPDGQILAGGDVD 286
Query: 450 SDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYG 509
R +T +A Y D+ LK + E+ W D
Sbjct: 287 YSR-----KKPKYYTMPALLAGSYYKDEYLNYEFLKDPNVEPHCKLF--EFLWRDTQLGS 339
Query: 510 AA 511
Sbjct: 340 RK 341
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A
{Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Length = 397
Score = 30.7 bits (69), Expect = 1.6
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 245 TSGQAMFY----YIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALI 300
T+G F+ ++ Y+ D K + A K + S N N R + + D G + +
Sbjct: 69 TNG---FWTGCLWLAYEYNQDKKLKNIAHKNVL-SFLNRINNRIALDHHDLGFLYTPSCT 124
Query: 301 --YKALGKQEKLESSVQKLKALA 321
Y+ G + LE++++ L
Sbjct: 125 AEYRINGDVKALEATIKAADKLM 147
Score = 29.1 bits (65), Expect = 4.7
Identities = 39/230 (16%), Positives = 66/230 (28%), Gaps = 59/230 (25%)
Query: 456 WCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNY-----YGA 510
W +G +T L +AYE DKK + K+ +F++ + HD + A
Sbjct: 68 WTNGF--WTGCLWLAYEYNQDKKLKNIAHKNVLSFLNRINNRIALDHHDLGFLYTPSCTA 125
Query: 511 AHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHG 570
+ + G D + D L++ G + G + +
Sbjct: 126 EYRING------------DVKALEATIKAADKLMERYQEKGGFIQAWGELGY---KEHY- 169
Query: 571 SPGFI------SLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVS------ 618
I LL AYE D+KY + + ++R S H
Sbjct: 170 -RLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASANN-VVRDDSSAFHTFYFDPETG 227
Query: 619 -------------------GNA---YAFLTAYHTTHAEEQMYRALCFANW 646
G A Y +Y +Q+ N+
Sbjct: 228 EPLKGVTRQGYSDESSWARGQAWGIYGIPLSYRKMKDYQQIILFKGMTNY 277
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase;
1.90A {Clostridium thermocellum} SCOP: a.102.1.2
b.1.18.2
Length = 639
Score = 31.0 bits (70), Expect = 1.7
Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 471 YETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDK 530
+ET D++YL + F +++W + G LL +
Sbjct: 361 WETLGDEEYLRDFENRAAQFSKKIEA--DFDWDNVANLGMFT-------YLLSERPGKNP 411
Query: 531 ERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHGSPGFI----SLLQVAYETYN 586
+K +L + D + +G W G G + +LQVA +
Sbjct: 412 ALVQSIKDSLLSTADSIVRTSQ-NHGYGRTLGTTYYW--GCNGTVVRQTMILQVANKISP 468
Query: 587 DKKYLDA 593
+ Y++A
Sbjct: 469 NNDYVNA 475
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.89A {Listeria innocua}
Length = 349
Score = 28.8 bits (64), Expect = 6.1
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 249 AMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNG 289
+ Y +++KYL+ A K E K L +G
Sbjct: 156 IILSCWLYNELNETKYLEWAMKTYEWQTKVLVREDGFVEDG 196
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction,
mutation, replication, hydrolase; 2.10A {Escherichia
coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Length = 404
Score = 28.2 bits (62), Expect = 9.0
Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 8/125 (6%)
Query: 319 ALAPHLVDLRSDIPDEILYGRAGYLYSL-LFVNKHIKSVNIEASLIRQVVDSILRSGQNL 377
A S PDE L R Y + L V + I VD + ++
Sbjct: 201 QYAASHYVKNSLDPDEQLLDRRRVEYDIFLLVEELHVLDIIRKGFGS--VDEFIALANSV 258
Query: 378 SARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETF 437
S R+KSR E H ++ + HG+ F + ++ + P+ A F
Sbjct: 259 SNRRKSRAGKSLELHLEHLF-IEHGLRH--FA--TQAITEGNKKPDFLFPSAGAYHDTEF 313
Query: 438 PSGNL 442
P NL
Sbjct: 314 PVENL 318
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair,
DNA binding protein; 3.41A {Mus musculus}
Length = 1323
Score = 28.4 bits (62), Expect = 9.8
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 16/104 (15%)
Query: 403 VTGILFTLLKSNVLTDKERD-----TLVKPTLDALLHETF----------PSGNLKSSHG 447
+ I + V K+ TL + T +G S
Sbjct: 1106 IEEITGVGVPELVSAPKDAASSTFPTLTRHTFVIFFRVMMAELEKTVKGLQAGTAADSQQ 1165
Query: 448 SDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFV 491
++L+ W F+ LL + + ++ L LK FV
Sbjct: 1166 VHEEKLLYWNMAVRDFSILLNLM-KVFDSYPVLHVCLKYGRRFV 1208
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.407
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,625,986
Number of extensions: 631782
Number of successful extensions: 1470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1388
Number of HSP's successfully gapped: 62
Length of query: 692
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 592
Effective length of database: 3,909,693
Effective search space: 2314538256
Effective search space used: 2314538256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.0 bits)