Query psy13780
Match_columns 100
No_of_seqs 158 out of 1214
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 20:19:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2451|consensus 99.8 4.3E-18 9.4E-23 117.7 8.5 90 2-94 60-149 (503)
2 PLN02419 methylmalonate-semial 99.7 5.7E-16 1.2E-20 113.8 11.4 84 1-87 149-232 (604)
3 PLN02315 aldehyde dehydrogenas 99.7 8E-16 1.7E-20 111.4 11.3 84 1-87 54-137 (508)
4 PLN02174 aldehyde dehydrogenas 99.7 1.2E-15 2.6E-20 109.8 11.6 83 2-87 9-92 (484)
5 COG1012 PutA NAD-dependent ald 99.7 1.6E-15 3.6E-20 108.9 11.2 85 1-88 34-118 (472)
6 PRK11903 aldehyde dehydrogenas 99.7 1.5E-15 3.3E-20 110.2 11.1 82 2-86 39-121 (521)
7 PRK11241 gabD succinate-semial 99.7 2E-15 4.3E-20 108.8 11.1 84 1-87 46-129 (482)
8 PRK09406 gabD1 succinic semial 99.6 2.3E-15 5.1E-20 107.8 10.4 84 1-87 21-104 (457)
9 PRK13968 putative succinate se 99.6 3.1E-15 6.7E-20 107.3 10.4 83 1-86 27-109 (462)
10 PLN02467 betaine aldehyde dehy 99.6 3.9E-15 8.3E-20 107.8 10.9 84 1-87 43-131 (503)
11 cd07097 ALDH_KGSADH-YcbD Bacil 99.6 5.4E-15 1.2E-19 106.2 11.2 84 1-87 35-118 (473)
12 cd07135 ALDH_F14-YMR110C Sacch 99.6 5.6E-15 1.2E-19 105.3 11.1 83 1-86 3-86 (436)
13 TIGR01237 D1pyr5carbox2 delta- 99.6 6.1E-15 1.3E-19 106.9 11.2 84 1-87 67-150 (511)
14 PLN02278 succinic semialdehyde 99.6 6.5E-15 1.4E-19 106.5 11.2 84 1-87 60-143 (498)
15 cd07120 ALDH_PsfA-ACA09737 Pse 99.6 1.1E-14 2.3E-19 104.4 11.1 85 1-87 17-101 (455)
16 cd07118 ALDH_SNDH Gluconobacte 99.6 1.4E-14 2.9E-19 103.7 11.7 85 1-86 17-101 (454)
17 cd07145 ALDH_LactADH_F420-Bios 99.6 9.2E-15 2E-19 104.6 10.8 84 1-87 19-102 (456)
18 PTZ00381 aldehyde dehydrogenas 99.6 1.5E-14 3.2E-19 104.5 11.8 85 1-88 5-90 (493)
19 cd07128 ALDH_MaoC-N N-terminal 99.6 8.1E-15 1.8E-19 106.3 10.3 79 3-85 36-115 (513)
20 PLN02203 aldehyde dehydrogenas 99.6 9.6E-15 2.1E-19 105.3 10.4 83 2-87 5-88 (484)
21 cd07124 ALDH_PutA-P5CDH-RocA D 99.6 1.3E-14 2.8E-19 105.2 11.0 84 1-87 67-150 (512)
22 TIGR01238 D1pyr5carbox3 delta- 99.6 1.1E-14 2.3E-19 105.4 10.5 83 1-86 72-154 (500)
23 cd07130 ALDH_F7_AASADH NAD+-de 99.6 1.5E-14 3.3E-19 104.0 11.3 84 1-87 32-115 (474)
24 cd07117 ALDH_StaphAldA1 Unchar 99.6 1.4E-14 3.1E-19 104.2 10.6 83 1-86 36-119 (475)
25 cd07150 ALDH_VaniDH_like Pseud 99.6 1.9E-14 4.2E-19 102.7 11.1 84 1-87 19-102 (451)
26 cd07101 ALDH_SSADH2_GabD2 Myco 99.6 1.9E-14 4.1E-19 103.0 10.9 84 1-87 16-99 (454)
27 PRK09847 gamma-glutamyl-gamma- 99.6 2.3E-14 5.1E-19 103.5 11.4 87 1-88 55-142 (494)
28 TIGR03374 ABALDH 1-pyrroline d 99.6 2.2E-14 4.7E-19 103.2 11.1 83 1-86 36-119 (472)
29 PRK03137 1-pyrroline-5-carboxy 99.6 2.3E-14 4.9E-19 104.0 11.2 82 1-85 71-152 (514)
30 cd07151 ALDH_HBenzADH NADP+-de 99.6 2.5E-14 5.3E-19 102.7 11.2 84 1-87 30-113 (465)
31 PF00171 Aldedh: Aldehyde dehy 99.6 1.4E-14 3.1E-19 103.7 9.9 85 1-88 27-111 (462)
32 cd07095 ALDH_SGSD_AstD N-succi 99.6 1.6E-14 3.5E-19 102.8 10.0 81 4-87 1-81 (431)
33 cd07083 ALDH_P5CDH ALDH subfam 99.6 2E-14 4.3E-19 104.0 10.4 84 1-87 53-136 (500)
34 PRK11904 bifunctional proline 99.6 2.2E-14 4.7E-19 110.6 11.1 83 1-86 583-665 (1038)
35 PLN02466 aldehyde dehydrogenas 99.6 3.6E-14 7.7E-19 103.5 11.7 86 1-87 93-179 (538)
36 cd07086 ALDH_F7_AASADH-like NA 99.6 3.3E-14 7.1E-19 102.4 11.1 84 1-87 33-116 (478)
37 cd07140 ALDH_F1L_FTFDH 10-form 99.6 3.2E-14 6.9E-19 102.7 11.0 86 1-87 41-127 (486)
38 TIGR01236 D1pyr5carbox1 delta- 99.6 3.1E-14 6.8E-19 103.7 10.9 84 1-87 67-152 (533)
39 PLN02766 coniferyl-aldehyde de 99.6 4E-14 8.6E-19 102.5 11.2 86 1-87 56-142 (501)
40 KOG2450|consensus 99.6 1.2E-14 2.6E-19 103.4 8.3 89 1-90 56-145 (501)
41 cd07123 ALDH_F4-17_P5CDH Delta 99.6 3.8E-14 8.3E-19 103.0 11.1 84 1-87 67-152 (522)
42 cd07152 ALDH_BenzADH NAD-depen 99.6 3.5E-14 7.5E-19 101.3 10.6 83 1-86 11-93 (443)
43 cd07559 ALDH_ACDHII_AcoD-like 99.6 4E-14 8.6E-19 102.0 10.9 84 1-87 36-120 (480)
44 TIGR01722 MMSDH methylmalonic 99.6 4.6E-14 1E-18 101.5 11.2 84 1-87 36-119 (477)
45 cd07116 ALDH_ACDHII-AcoD Ralst 99.6 3.8E-14 8.2E-19 102.0 10.7 84 1-87 36-120 (479)
46 TIGR01780 SSADH succinate-semi 99.6 4.7E-14 1E-18 100.8 11.1 84 1-87 17-100 (448)
47 cd07107 ALDH_PhdK-like Nocardi 99.6 4E-14 8.7E-19 101.3 10.8 84 1-87 17-100 (456)
48 cd07089 ALDH_CddD-AldA-like Rh 99.6 4.4E-14 9.5E-19 101.3 10.8 85 1-88 17-103 (459)
49 COG4230 Delta 1-pyrroline-5-ca 99.6 4.1E-14 8.9E-19 102.0 10.5 83 1-86 148-230 (769)
50 cd07085 ALDH_F6_MMSDH Methylma 99.6 5.2E-14 1.1E-18 101.3 11.1 84 1-87 36-119 (478)
51 cd07142 ALDH_F2BC Arabidosis a 99.6 6.4E-14 1.4E-18 100.8 11.5 86 1-87 39-125 (476)
52 PRK09457 astD succinylglutamic 99.6 4E-14 8.8E-19 102.1 10.5 84 1-87 35-118 (487)
53 cd07090 ALDH_F9_TMBADH NAD+-de 99.6 4.5E-14 9.7E-19 101.1 10.7 84 1-87 17-100 (457)
54 PRK09407 gabD2 succinic semial 99.6 4.6E-14 1E-18 102.6 10.9 84 1-87 52-135 (524)
55 cd07094 ALDH_F21_LactADH-like 99.6 4.9E-14 1.1E-18 100.8 10.8 85 1-88 19-103 (453)
56 PLN00412 NADP-dependent glycer 99.6 4.2E-14 9.1E-19 102.3 10.5 82 1-85 51-132 (496)
57 cd07088 ALDH_LactADH-AldA Esch 99.6 5.5E-14 1.2E-18 100.8 11.1 84 1-87 33-116 (468)
58 PRK13252 betaine aldehyde dehy 99.6 4.6E-14 1E-18 101.8 10.5 84 1-87 42-126 (488)
59 cd07148 ALDH_RL0313 Uncharacte 99.6 9.2E-14 2E-18 99.5 11.9 84 1-87 19-103 (455)
60 cd07147 ALDH_F21_RNP123 Aldehy 99.6 5.1E-14 1.1E-18 100.6 10.6 84 1-87 19-102 (452)
61 cd07125 ALDH_PutA-P5CDH Delta( 99.6 6.1E-14 1.3E-18 101.8 11.2 84 1-87 67-150 (518)
62 cd07113 ALDH_PADH_NahF Escheri 99.6 6.2E-14 1.4E-18 100.9 11.1 84 1-87 35-120 (477)
63 PRK11809 putA trifunctional tr 99.6 3.2E-14 7E-19 111.2 10.2 81 1-84 680-760 (1318)
64 TIGR01804 BADH glycine betaine 99.6 6.5E-14 1.4E-18 100.5 11.1 84 1-87 33-117 (467)
65 cd07102 ALDH_EDX86601 Uncharac 99.6 6.9E-14 1.5E-18 99.9 11.2 84 1-87 16-99 (452)
66 cd07110 ALDH_F10_BADH Arabidop 99.6 4.9E-14 1.1E-18 100.9 10.3 82 1-85 17-98 (456)
67 TIGR02278 PaaN-DH phenylacetic 99.6 3.6E-14 7.7E-19 105.5 9.9 78 3-84 36-114 (663)
68 TIGR03216 OH_muco_semi_DH 2-hy 99.6 8.9E-14 1.9E-18 100.2 11.5 83 1-86 34-118 (481)
69 cd07099 ALDH_DDALDH Methylomon 99.5 9.3E-14 2E-18 99.3 11.1 84 1-87 16-99 (453)
70 cd07108 ALDH_MGR_2402 Magnetos 99.5 7.4E-14 1.6E-18 100.0 10.6 84 1-87 17-101 (457)
71 cd07131 ALDH_AldH-CAJ73105 Unc 99.5 9.7E-14 2.1E-18 99.8 11.2 84 1-87 35-118 (478)
72 cd07100 ALDH_SSADH1_GabD1 Myco 99.5 5.2E-14 1.1E-18 100.1 9.7 79 5-86 1-79 (429)
73 cd07105 ALDH_SaliADH Salicylal 99.5 6.6E-14 1.4E-18 99.6 10.1 80 4-86 1-80 (432)
74 cd07119 ALDH_BADH-GbsA Bacillu 99.5 1.2E-13 2.6E-18 99.5 11.3 86 1-87 33-118 (482)
75 TIGR02299 HpaE 5-carboxymethyl 99.5 9.4E-14 2E-18 100.2 10.7 81 1-84 36-116 (488)
76 cd07136 ALDH_YwdH-P39616 Bacil 99.5 5.6E-14 1.2E-18 100.6 9.5 78 7-87 2-80 (449)
77 TIGR03240 arg_catab_astD succi 99.5 9E-14 1.9E-18 100.2 10.6 84 1-87 33-116 (484)
78 cd07082 ALDH_F11_NP-GAPDH NADP 99.5 1E-13 2.2E-18 99.6 10.7 85 1-88 36-121 (473)
79 cd07109 ALDH_AAS00426 Uncharac 99.5 1.2E-13 2.6E-18 98.8 10.7 85 1-88 17-102 (454)
80 cd07138 ALDH_CddD_SSP0762 Rhod 99.5 1E-13 2.2E-18 99.5 10.3 83 1-86 34-117 (466)
81 cd07139 ALDH_AldA-Rv0768 Mycob 99.5 1.9E-13 4.1E-18 98.2 11.6 85 1-86 34-119 (471)
82 cd07143 ALDH_AldA_AN0554 Asper 99.5 1.6E-13 3.6E-18 98.9 11.2 85 1-87 42-128 (481)
83 PRK13473 gamma-aminobutyraldeh 99.5 1.6E-13 3.5E-18 98.6 11.1 84 1-87 37-121 (475)
84 cd07112 ALDH_GABALDH-PuuC Esch 99.5 1.6E-13 3.6E-18 98.4 11.1 86 1-87 22-108 (462)
85 cd07126 ALDH_F12_P5CDH Delta(1 99.5 1.3E-13 2.9E-18 99.5 10.6 84 1-87 32-123 (489)
86 cd07103 ALDH_F5_SSADH_GabD Mit 99.5 1.9E-13 4.1E-18 97.6 11.2 84 1-87 17-100 (451)
87 cd07149 ALDH_y4uC Uncharacteri 99.5 1.7E-13 3.7E-18 97.9 10.7 84 1-87 19-102 (453)
88 cd07098 ALDH_F15-22 Aldehyde d 99.5 2.7E-13 5.8E-18 97.3 11.6 82 1-85 16-98 (465)
89 cd07106 ALDH_AldA-AAD23400 Str 99.5 1.5E-13 3.3E-18 98.1 10.0 78 1-81 17-94 (446)
90 cd07115 ALDH_HMSADH_HapE Pseud 99.5 2E-13 4.3E-18 97.7 10.4 84 1-87 17-101 (453)
91 cd07132 ALDH_F3AB Aldehyde deh 99.5 2.5E-13 5.5E-18 97.1 10.9 77 7-86 2-79 (443)
92 cd07104 ALDH_BenzADH-like ALDH 99.5 1.9E-13 4.1E-18 97.1 10.2 80 4-86 1-80 (431)
93 PRK11563 bifunctional aldehyde 99.5 1.7E-13 3.7E-18 102.2 10.0 78 3-84 40-118 (675)
94 PRK11905 bifunctional proline 99.5 2E-13 4.3E-18 106.6 10.6 83 1-86 588-670 (1208)
95 cd07114 ALDH_DhaS Uncharacteri 99.5 4.3E-13 9.4E-18 96.0 11.6 85 1-86 17-101 (457)
96 cd07137 ALDH_F3FHI Plant aldeh 99.5 2.7E-13 5.9E-18 96.7 10.0 78 6-86 2-80 (432)
97 cd07087 ALDH_F3-13-14_CALDH-li 99.5 3.2E-13 7E-18 96.0 9.9 77 7-86 2-79 (426)
98 cd07092 ALDH_ABALDH-YdcW Esche 99.5 7.2E-13 1.6E-17 94.7 11.1 83 1-86 17-100 (450)
99 cd07111 ALDH_F16 Aldehyde dehy 99.5 5.8E-13 1.3E-17 96.0 10.6 81 1-84 57-138 (480)
100 cd07144 ALDH_ALD2-YMR170C Sacc 99.5 7.6E-13 1.7E-17 95.4 10.9 84 1-87 43-128 (484)
101 cd07093 ALDH_F8_HMSADH Human a 99.5 7.4E-13 1.6E-17 94.7 10.7 82 1-85 17-99 (455)
102 cd07141 ALDH_F1AB_F2_RALDH1 NA 99.5 9.8E-13 2.1E-17 94.8 11.4 87 1-87 42-129 (481)
103 cd07091 ALDH_F1-2_Ald2-like AL 99.5 1.3E-12 2.9E-17 94.0 11.4 84 1-87 39-125 (476)
104 cd07129 ALDH_KGSADH Alpha-Keto 99.4 6.3E-13 1.4E-17 95.3 8.9 76 5-83 1-76 (454)
105 TIGR03250 PhnAcAld_DH putative 99.4 2.5E-12 5.5E-17 92.6 11.1 81 1-87 37-117 (472)
106 cd07084 ALDH_KGSADH-like ALDH 99.4 6.2E-13 1.4E-17 95.0 7.7 74 6-83 2-75 (442)
107 cd07134 ALDH_AlkH-like Pseudom 99.4 1.7E-12 3.6E-17 92.6 9.9 76 7-85 2-78 (433)
108 cd07122 ALDH_F20_ACDH Coenzyme 99.4 8.7E-13 1.9E-17 94.2 8.2 72 5-79 1-74 (436)
109 cd07146 ALDH_PhpJ Streptomyces 99.4 2.9E-12 6.4E-17 91.8 10.4 81 1-87 19-99 (451)
110 cd07133 ALDH_CALDH_CalB Conife 99.4 6E-12 1.3E-16 89.8 10.8 78 7-87 2-81 (434)
111 cd07081 ALDH_F20_ACDH_EutE-lik 99.4 2.1E-12 4.6E-17 92.3 8.5 65 5-72 1-65 (439)
112 cd07127 ALDH_PAD-PaaZ Phenylac 99.4 4.4E-12 9.6E-17 92.7 10.2 80 4-86 85-169 (549)
113 TIGR02288 PaaN_2 phenylacetic 99.3 7.9E-12 1.7E-16 91.4 9.5 81 4-87 85-170 (551)
114 cd07121 ALDH_EutE Ethanolamine 99.3 1.1E-11 2.4E-16 88.4 8.4 69 2-79 3-71 (429)
115 KOG2452|consensus 99.3 1.4E-12 3.1E-17 93.1 3.0 90 2-92 458-548 (881)
116 PLN02418 delta-1-pyrroline-5-c 99.3 2.2E-11 4.8E-16 91.5 9.5 81 3-87 294-386 (718)
117 PRK13805 bifunctional acetalde 99.3 2.2E-11 4.8E-16 93.0 9.6 75 1-78 10-85 (862)
118 PRK00197 proA gamma-glutamyl p 99.3 1.6E-11 3.4E-16 87.3 7.4 79 2-83 3-93 (417)
119 cd07078 ALDH NAD(P)+ dependent 99.3 6.1E-11 1.3E-15 84.2 9.8 79 6-87 1-79 (432)
120 KOG2453|consensus 99.2 3E-11 6.6E-16 83.1 6.6 94 1-97 53-146 (507)
121 KOG2455|consensus 99.2 1.6E-10 3.5E-15 81.7 10.1 87 2-91 95-183 (561)
122 cd06534 ALDH-SF NAD(P)+-depend 99.2 1.2E-10 2.6E-15 81.3 9.3 73 11-86 2-74 (367)
123 TIGR02518 EutH_ACDH acetaldehy 99.2 1.4E-10 3.1E-15 83.9 9.8 76 1-79 6-82 (488)
124 PRK15398 aldehyde dehydrogenas 99.2 9E-11 1.9E-15 84.5 8.6 61 2-65 35-95 (465)
125 TIGR00407 proA gamma-glutamyl 99.2 5E-11 1.1E-15 84.4 6.5 70 12-84 1-82 (398)
126 cd07079 ALDH_F18-19_ProA-GPR G 99.1 3.8E-10 8.1E-15 80.1 6.4 73 7-82 2-86 (406)
127 cd07077 ALDH-like NAD(P)+-depe 99.1 4.1E-10 9E-15 79.6 6.0 71 11-84 2-83 (397)
128 KOG2454|consensus 99.0 5E-10 1.1E-14 78.4 5.6 85 1-88 84-169 (583)
129 KOG2456|consensus 99.0 7E-09 1.5E-13 72.9 10.7 85 4-91 3-88 (477)
130 TIGR01092 P5CS delta l-pyrroli 98.8 4.5E-08 9.8E-13 73.9 8.5 70 4-80 287-372 (715)
131 PRK10090 aldehyde dehydrogenas 98.6 2.6E-07 5.7E-12 65.8 7.2 54 34-87 1-54 (409)
132 KOG4165|consensus 95.3 0.045 9.9E-07 38.5 4.8 43 5-50 2-44 (433)
133 COG0014 ProA Gamma-glutamyl ph 90.0 1.5 3.2E-05 31.8 6.0 49 3-54 3-51 (417)
134 PF06945 DUF1289: Protein of u 86.1 0.9 2E-05 23.1 2.3 21 21-41 29-49 (51)
135 PF13376 OmdA: Bacteriocin-pro 84.5 1.3 2.8E-05 23.4 2.5 36 2-40 7-42 (63)
136 cd01390 HMGB-UBF_HMG-box HMGB- 83.5 3.7 8E-05 21.1 4.1 28 21-48 38-65 (66)
137 PF09011 HMG_box_2: HMG-box do 80.5 6.1 0.00013 21.2 4.3 37 11-50 35-71 (73)
138 PF00505 HMG_box: HMG (high mo 78.8 6.4 0.00014 20.4 4.0 30 21-50 38-67 (69)
139 PF08776 VASP_tetra: VASP tetr 78.6 5.2 0.00011 19.3 3.1 28 30-57 9-36 (40)
140 cd07080 ALDH_Acyl-CoA-Red_LuxC 75.2 6.5 0.00014 28.5 4.3 57 5-64 26-85 (422)
141 PF14723 SSFA2_C: Sperm-specif 74.9 18 0.00039 23.3 5.6 43 3-50 122-166 (179)
142 smart00398 HMG high mobility g 74.4 10 0.00022 19.5 4.5 29 21-49 39-67 (70)
143 PF06163 DUF977: Bacterial pro 71.4 21 0.00044 21.8 5.4 41 24-64 4-44 (127)
144 cd01388 SOX-TCF_HMG-box SOX-TC 70.8 12 0.00025 20.0 3.7 28 21-48 39-66 (72)
145 COG3313 Predicted Fe-S protein 70.4 5.9 0.00013 21.8 2.4 20 21-40 34-53 (74)
146 PF07208 DUF1414: Protein of u 69.4 11 0.00024 18.6 3.0 21 23-43 22-42 (44)
147 TIGR03481 HpnM hopanoid biosyn 68.9 6 0.00013 25.8 2.7 23 21-43 77-99 (198)
148 PF05494 Tol_Tol_Ttg2: Toluene 68.4 7.5 0.00016 24.4 3.0 24 21-44 51-74 (170)
149 PF06518 DUF1104: Protein of u 67.4 7.8 0.00017 22.3 2.7 37 21-57 56-92 (93)
150 cd00084 HMG-box High Mobility 66.8 15 0.00033 18.6 4.4 27 21-47 38-64 (66)
151 PRK15117 ABC transporter perip 65.4 8 0.00017 25.5 2.8 23 21-43 81-103 (211)
152 PF08006 DUF1700: Protein of u 59.8 24 0.00052 22.4 4.2 42 23-64 15-58 (181)
153 PF15612 WHIM1: WSTF, HB1, Itc 59.6 20 0.00043 17.6 3.1 21 21-41 13-33 (50)
154 cd01389 MATA_HMG-box MATA_HMG- 56.0 31 0.00067 18.5 3.8 28 21-48 39-66 (77)
155 COG4709 Predicted membrane pro 55.8 31 0.00068 22.6 4.1 42 22-63 14-57 (195)
156 PF11304 DUF3106: Protein of u 54.2 23 0.00049 20.8 3.1 18 21-38 55-72 (107)
157 PF10654 DUF2481: Protein of u 52.0 28 0.00061 20.9 3.2 25 23-47 22-46 (126)
158 PF12758 DUF3813: Protein of u 50.9 24 0.00053 18.8 2.6 36 4-42 25-60 (63)
159 PF14376 Haem_bd: Haem-binding 50.0 49 0.0011 20.2 4.3 48 5-53 67-114 (137)
160 PRK09635 sigI RNA polymerase s 49.5 84 0.0018 21.6 6.5 52 3-57 149-204 (290)
161 PF09655 Nitr_red_assoc: Conse 49.3 34 0.00075 21.3 3.4 41 21-61 34-77 (144)
162 cd00591 HU_IHF Integration hos 48.9 44 0.00095 18.2 4.6 36 45-80 2-37 (87)
163 PF09720 Unstab_antitox: Putat 48.9 21 0.00046 17.9 2.2 21 24-44 1-21 (54)
164 PRK12276 putative heme peroxid 48.0 24 0.00053 24.0 2.9 26 21-46 24-49 (248)
165 PTZ00199 high mobility group p 46.4 54 0.0012 18.5 4.6 30 21-50 62-91 (94)
166 PF07205 DUF1413: Domain of un 43.8 39 0.00085 18.0 2.8 26 21-46 27-52 (70)
167 TIGR02574 stabl_TIGR02574 puta 43.6 39 0.00084 17.7 2.7 20 24-43 2-21 (63)
168 PF07942 N2227: N2227-like pro 41.2 92 0.002 21.5 4.9 42 2-46 8-49 (270)
169 PF14887 HMG_box_5: HMG (high 41.1 45 0.00097 18.7 2.7 31 21-51 40-70 (85)
170 PF04994 TfoX_C: TfoX C-termin 40.8 34 0.00073 19.0 2.3 17 21-37 65-81 (81)
171 COG2854 Ttg2D ABC-type transpo 40.6 49 0.0011 21.9 3.3 37 21-60 83-119 (202)
172 PRK09897 hypothetical protein; 40.2 44 0.00095 25.3 3.5 37 7-45 351-387 (534)
173 COG4084 Uncharacterized protei 40.0 87 0.0019 19.0 4.4 39 21-59 24-62 (135)
174 PF13309 HTH_22: HTH domain 38.9 61 0.0013 17.0 4.3 32 5-38 3-34 (64)
175 PF04698 Rab_eff_C: Rab effect 38.2 64 0.0014 25.4 4.0 39 3-54 49-87 (714)
176 PRK09448 DNA starvation/statio 38.1 66 0.0014 20.2 3.6 41 21-61 45-87 (162)
177 PF06628 Catalase-rel: Catalas 37.7 64 0.0014 17.1 3.1 27 21-47 16-42 (68)
178 PRK13689 hypothetical protein; 37.3 68 0.0015 17.7 3.1 22 23-44 47-68 (75)
179 PF03533 SPO11_like: SPO11 hom 37.0 55 0.0012 15.9 3.1 24 36-59 10-33 (43)
180 PRK10236 hypothetical protein; 35.7 85 0.0018 21.3 3.9 21 21-41 125-145 (237)
181 PF01110 CNTF: Ciliary neurotr 34.6 1.4E+02 0.003 19.8 8.1 38 21-58 63-100 (199)
182 TIGR02957 SigX4 RNA polymerase 34.3 1.5E+02 0.0032 20.1 6.6 52 2-56 138-193 (281)
183 PF07023 DUF1315: Protein of u 33.7 99 0.0021 17.9 4.9 37 7-44 11-50 (93)
184 TIGR03687 pupylate_cterm ubiqu 33.3 57 0.0012 15.0 3.7 26 32-57 7-32 (33)
185 smart00411 BHL bacterial (prok 33.2 87 0.0019 17.1 4.6 35 45-79 3-37 (90)
186 TIGR02664 nitr_red_assoc conse 32.3 65 0.0014 20.2 2.8 40 21-60 34-76 (145)
187 PRK10753 transcriptional regul 31.3 1E+02 0.0022 17.3 4.7 36 44-79 2-37 (90)
188 PF14698 ASL_C2: Argininosucci 31.2 91 0.002 16.7 4.3 28 45-73 4-31 (70)
189 PRK12751 cpxP periplasmic stre 31.1 1.4E+02 0.0031 18.9 5.0 37 5-44 113-149 (162)
190 TIGR00987 himA integration hos 30.6 1.1E+02 0.0023 17.3 4.6 36 45-80 4-39 (96)
191 PHA02943 hypothetical protein; 29.8 1.3E+02 0.0028 19.2 3.8 47 36-83 4-50 (165)
192 PF13618 Gluconate_2-dh3: Gluc 28.5 1.3E+02 0.0029 17.7 4.2 19 21-39 67-85 (131)
193 PF09177 Syntaxin-6_N: Syntaxi 28.4 1.2E+02 0.0026 17.1 6.6 70 2-74 7-86 (97)
194 PRK09706 transcriptional repre 28.3 1.4E+02 0.003 17.8 4.4 32 21-52 95-126 (135)
195 PF09932 DUF2164: Uncharacteri 28.2 1.1E+02 0.0024 16.8 4.7 35 24-58 2-45 (76)
196 PRK05287 hypothetical protein; 28.1 1.7E+02 0.0037 20.0 4.4 41 21-61 141-183 (250)
197 TIGR01201 HU_rel DNA-binding p 27.4 1.6E+02 0.0034 18.1 4.7 37 44-80 32-68 (145)
198 PRK00285 ihfA integration host 27.2 1.3E+02 0.0027 17.0 4.7 36 45-80 5-40 (99)
199 PF00216 Bac_DNA_binding: Bact 27.1 1.1E+02 0.0025 16.5 4.8 35 45-79 3-37 (90)
200 PF08822 DUF1804: Protein of u 26.4 1.8E+02 0.004 18.6 8.1 23 22-44 89-111 (165)
201 PF03480 SBP_bac_7: Bacterial 26.0 1.7E+02 0.0038 19.6 4.3 24 21-44 215-238 (286)
202 PRK09565 hypothetical protein; 25.9 88 0.0019 23.8 2.9 25 21-45 26-50 (533)
203 KOG0840|consensus 25.8 1.3E+02 0.0029 20.8 3.6 28 38-65 205-232 (275)
204 COG1638 DctP TRAP-type C4-dica 25.1 2.1E+02 0.0045 20.3 4.7 26 21-46 246-271 (332)
205 KOG0381|consensus 24.6 1.4E+02 0.0029 16.5 5.1 29 21-49 60-88 (96)
206 cd01043 DPS DPS protein, ferri 24.5 1.6E+02 0.0036 17.4 3.9 38 25-62 27-64 (139)
207 PF10410 DnaB_bind: DnaB-helic 23.6 1.1E+02 0.0024 15.1 4.4 36 24-59 15-55 (59)
208 PF07072 DUF1342: Protein of u 23.3 1.4E+02 0.0031 19.8 3.3 40 21-60 124-165 (211)
209 COG3372 Predicted nuclease of 23.1 1.6E+02 0.0034 21.7 3.7 37 21-57 94-130 (396)
210 PF05626 DUF790: Protein of un 23.1 1.3E+02 0.0027 22.0 3.3 41 14-57 90-130 (379)
211 PF02936 COX4: Cytochrome c ox 23.1 1.2E+02 0.0026 18.8 2.8 28 5-34 29-56 (142)
212 PRK10363 cpxP periplasmic repr 22.8 2.2E+02 0.0047 18.3 5.1 39 3-44 105-143 (166)
213 PF00210 Ferritin: Ferritin-li 22.7 1.7E+02 0.0036 16.9 4.1 39 24-62 27-65 (142)
214 COG0783 Dps DNA-binding ferrit 22.6 2E+02 0.0044 18.1 3.8 41 21-61 38-80 (156)
215 PF04456 DUF503: Protein of un 22.3 1.6E+02 0.0034 16.7 3.0 21 24-44 14-34 (90)
216 PF00982 Glyco_transf_20: Glyc 21.6 2.7E+02 0.0059 20.8 4.8 34 4-44 426-459 (474)
217 COG1093 SUI2 Translation initi 21.4 2.9E+02 0.0063 19.2 5.8 45 22-68 82-126 (269)
218 PF14098 SSPI: Small, acid-sol 21.2 87 0.0019 16.8 1.7 20 21-40 45-64 (65)
219 PF11647 PMT_C: C-terminal reg 21.1 1.5E+02 0.0033 15.8 2.9 29 46-75 3-31 (66)
220 PF11417 Inhibitor_G39P: Loade 21.1 1.6E+02 0.0034 16.0 4.4 45 2-49 3-48 (71)
221 PF12213 Dpoe2NT: DNA polymera 20.5 1.5E+02 0.0032 16.1 2.6 19 25-43 35-53 (73)
222 PRK12552 ATP-dependent Clp pro 20.3 2.6E+02 0.0056 18.8 4.1 34 31-64 155-188 (222)
223 PF14706 Tnp_DNA_bind: Transpo 20.1 1.5E+02 0.0033 15.4 4.9 35 42-76 18-52 (58)
224 PRK09636 RNA polymerase sigma 20.0 3E+02 0.0064 18.7 6.2 51 3-56 146-200 (293)
No 1
>KOG2451|consensus
Probab=99.76 E-value=4.3e-18 Score=117.74 Aligned_cols=90 Identities=36% Similarity=0.535 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhch
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWC 81 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~ 81 (100)
.+|.+.||.+|.+||. .|++++..+|..+|++|.++|.+|.++|+.+++.|.|||+.++.+||..+..+++||++.+
T Consensus 60 V~e~~kAI~aA~EaF~---s~~~~takeRs~lLrkwy~Li~en~ddLa~iiTlE~GKpL~eA~gEv~y~a~f~eWyAeEA 136 (503)
T KOG2451|consen 60 VEEAEKAIDAAYEAFK---SYRNLTAKERSALLRKWYELIMENKDDLATIITLENGKPLGEAKGEVAYSAAFFEWYAEEA 136 (503)
T ss_pred HHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHhchHHHHHHHhhhcCCchhhccceeehhHHHHHHHHHHh
Confidence 5789999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcccCCCCC
Q psy13780 82 DKIEGSTIPSESK 94 (100)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (100)
.+..++..++..+
T Consensus 137 ~RvyGdii~s~~~ 149 (503)
T KOG2451|consen 137 RRVYGDIIPSLNP 149 (503)
T ss_pred hhhhccccCCCCC
Confidence 9999987765443
No 2
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=99.68 E-value=5.7e-16 Score=113.75 Aligned_cols=84 Identities=32% Similarity=0.413 Sum_probs=79.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+||+.||++|++||+ .|+.+|..+|.++|.+++++|++|+++|+.+++.|+|||+.++..||..+++.++||+..
T Consensus 149 ~~~dv~~Av~aA~~A~~---~W~~~~~~eR~~iL~k~a~~L~~~~~ela~~~~~E~GKp~~ea~~EV~~~i~~~~~~a~~ 225 (604)
T PLN02419 149 TNEEFKAAVSAAKQAFP---LWRNTPITTRQRVMLKFQELIRKNMDKLAMNITTEQGKTLKDSHGDIFRGLEVVEHACGM 225 (604)
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+..+.+.
T Consensus 226 a~~~~g~ 232 (604)
T PLN02419 226 ATLQMGE 232 (604)
T ss_pred HHHhhCC
Confidence 8777654
No 3
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=99.67 E-value=8e-16 Score=111.38 Aligned_cols=84 Identities=23% Similarity=0.465 Sum_probs=78.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+||+.||++|++||+ .|+++|..+|.++|.+++++|++|+++|+++++.|+|||+.++..|+..+++.++|++..
T Consensus 54 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~GK~~~~a~~ev~~~i~~~~~~~~~ 130 (508)
T PLN02315 54 SLEDYEEGLRACEEAAK---IWMQVPAPKRGEIVRQIGDALRAKLDYLGRLVSLEMGKILAEGIGEVQEIIDMCDFAVGL 130 (508)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999988
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+..+.+.
T Consensus 131 ~~~l~~~ 137 (508)
T PLN02315 131 SRQLNGS 137 (508)
T ss_pred HHHhcCc
Confidence 8776554
No 4
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=99.67 E-value=1.2e-15 Score=109.84 Aligned_cols=83 Identities=16% Similarity=0.087 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhc
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGW 80 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~ 80 (100)
..|++.++++|++||+ .|+.+|+.+|.++|.+++++|++|+++|+.+++.|+|||..++.. |+..+++.++|++++
T Consensus 9 ~~~v~~av~~a~~af~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~l~~e~GKp~~~a~~~Ev~~~~~~~~~~~~~ 85 (484)
T PLN02174 9 AADASILVTELRRSFD---DGVTRGYEWRVTQLKKLMIICDNHEPEIVAALRDDLGKPELESSVYEVSLLRNSIKLALKQ 85 (484)
T ss_pred HHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999 999999999999999999999999999999999999999999976 999999999999999
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.++
T Consensus 86 ~~~~~~~ 92 (484)
T PLN02174 86 LKNWMAP 92 (484)
T ss_pred HHHHhcc
Confidence 9888763
No 5
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=99.66 E-value=1.6e-15 Score=108.93 Aligned_cols=85 Identities=36% Similarity=0.640 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|+.+|. .|+++|+.+|.++|.+++++|++|.++|+.+++.|+|||+.++..++..+++.++||+..
T Consensus 34 ~~~dv~~Av~aA~~a~~---~W~~~~~~eR~~iL~~~a~~l~~~~~ela~~~~~e~Gk~i~ea~~ei~~~~~~~~~~a~~ 110 (472)
T COG1012 34 TAEDVDAAVAAARAAFE---AWSRLSAEERAAILRRIADLLEARAEELAALITLETGKPISEARGEIARAADFIRYYAEE 110 (472)
T ss_pred CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.+..
T Consensus 111 ~~~~~~~~ 118 (472)
T COG1012 111 ARRLEGET 118 (472)
T ss_pred HHHhcCCc
Confidence 98877654
No 6
>PRK11903 aldehyde dehydrogenase; Provisional
Probab=99.66 E-value=1.5e-15 Score=110.20 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHh-cCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 2 SADVDKAVESAKAAF-KRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~-~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
.+||++||++|++|| + .|+++|+.+|.++|.+++++|++++++|+.+++.|+|||+.++..||..+++.++||+..
T Consensus 39 ~~dv~~Av~aA~~A~~~---~W~~~~~~eR~~~L~~~a~~l~~~~~ela~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~ 115 (521)
T PRK11903 39 GLDLAAAFAFAREQGGA---ALRALTYAQRAALLAAIVKVLQANRDAYYDIATANSGTTRNDSAVDIDGGIFTLGYYAKL 115 (521)
T ss_pred hHHHHHHHHHHHHhhhh---hhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999995 8 999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcC
Q psy13780 81 CDKIEG 86 (100)
Q Consensus 81 ~~~~~~ 86 (100)
+..+.+
T Consensus 116 a~~~~~ 121 (521)
T PRK11903 116 GAALGD 121 (521)
T ss_pred HHHcCC
Confidence 766543
No 7
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=99.65 E-value=2e-15 Score=108.78 Aligned_cols=84 Identities=27% Similarity=0.456 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+||+.|+++|++||+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||+.++..|+..+++.++|++..
T Consensus 46 ~~~~v~~av~~A~~a~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 122 (482)
T PRK11241 46 GADETRAAIDAANRALP---AWRALTAKERANILRRWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEE 122 (482)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999988999999999999988
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.+..+.
T Consensus 123 ~~~~~g~ 129 (482)
T PRK11241 123 GKRIYGD 129 (482)
T ss_pred HHHhcCc
Confidence 8766543
No 8
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=99.64 E-value=2.3e-15 Score=107.78 Aligned_cols=84 Identities=25% Similarity=0.399 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+|++|++||+ .|+.+|..+|.++|.+++++|++++++|+++++.|+|||+.++..||..+++.++||+..
T Consensus 21 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 97 (457)
T PRK09406 21 TDDEVDAAIARAHARFR---DYRTTTFAQRARWANAAADLLEAEADQVAALMTLEMGKTLASAKAEALKCAKGFRYYAEH 97 (457)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.+.
T Consensus 98 ~~~~~~~ 104 (457)
T PRK09406 98 AEALLAD 104 (457)
T ss_pred HHHHhCC
Confidence 8877643
No 9
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=99.63 E-value=3.1e-15 Score=107.30 Aligned_cols=83 Identities=17% Similarity=0.332 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|+++|++.|+++|+ .|+.+++.+|.++|.+++++|++|+++|+.+++.|+|||..++..|+..++..++||+..
T Consensus 27 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 103 (462)
T PRK13968 27 GADDIENALQLAAAGFR---DWRETNIDYRAQKLRDIGKALRARSEEMAQMITREMGKPINQARAEVAKSANLCDWYAEH 103 (462)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999988999999999999998
Q ss_pred hhhhcC
Q psy13780 81 CDKIEG 86 (100)
Q Consensus 81 ~~~~~~ 86 (100)
+.++.+
T Consensus 104 ~~~~~~ 109 (462)
T PRK13968 104 GPAMLK 109 (462)
T ss_pred HHHhhC
Confidence 877654
No 10
>PLN02467 betaine aldehyde dehydrogenase
Probab=99.63 E-value=3.9e-15 Score=107.76 Aligned_cols=84 Identities=35% Similarity=0.591 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHHHHh-----cCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAF-----KRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFR 75 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~-----~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~ 75 (100)
+.+|++.||++|++|| + .|+++|..+|.++|.+++++|++++++|+.+++.|+|||..++..|+..++..++
T Consensus 43 ~~~dv~~av~~A~~a~~~~~~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~ 119 (503)
T PLN02467 43 TAEDVDAAVEAARKAFKRNKGK---DWARTTGAVRAKYLRAIAAKITERKSELAKLETLDCGKPLDEAAWDMDDVAGCFE 119 (503)
T ss_pred CHHHHHHHHHHHHHHhhhcccc---hhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999999 7 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchhhhcCc
Q psy13780 76 YFAGWCDKIEGS 87 (100)
Q Consensus 76 ~~a~~~~~~~~~ 87 (100)
||+..+.++.+.
T Consensus 120 ~~a~~~~~~~~~ 131 (503)
T PLN02467 120 YYADLAEALDAK 131 (503)
T ss_pred HHHHHHHHhcCc
Confidence 999988877554
No 11
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=99.63 E-value=5.4e-15 Score=106.23 Aligned_cols=84 Identities=29% Similarity=0.486 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|+++||+.|++||+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++..|+..++..++||+..
T Consensus 35 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~ 111 (473)
T cd07097 35 SAEDADAAIAAAAAAFP---AWRRTSPEARADILDKAGDELEARKEELARLLTREEGKTLPEARGEVTRAGQIFRYYAGE 111 (473)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999998
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
..++.++
T Consensus 112 ~~~~~g~ 118 (473)
T cd07097 112 ALRLSGE 118 (473)
T ss_pred HHHhcCc
Confidence 8777654
No 12
>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins. Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.
Probab=99.63 E-value=5.6e-15 Score=105.35 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+||+.|+++|+.||+ .|+.+|..+|.++|.++++.|.+|+++|+++++.|+|||..++.. |+..+++.++||+.
T Consensus 3 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~e~~~~ev~~~~~~~~~~a~ 79 (436)
T cd07135 3 PLDEIDSIHSRLRATFR---SGKTKDLEYRLWQLKQLYWAVKDNEEAIVEALKKDLGRPPFETLLTEVSGVKNDILHMLK 79 (436)
T ss_pred CHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999975 99999999999999
Q ss_pred chhhhcC
Q psy13780 80 WCDKIEG 86 (100)
Q Consensus 80 ~~~~~~~ 86 (100)
.+.++.+
T Consensus 80 ~~~~~~~ 86 (436)
T cd07135 80 NLKKWAK 86 (436)
T ss_pred HHHHhhC
Confidence 8877643
No 13
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=99.62 E-value=6.1e-15 Score=106.87 Aligned_cols=84 Identities=23% Similarity=0.391 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+||+.||+.|+.||+ .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..++..++|++..
T Consensus 67 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 143 (511)
T TIGR01237 67 SVEQAEHALQIAKKAFE---AWKKTPVRERAGILRKAAAIMERRRHELNALICLEVGKIIPEADAEVAEAIDFCEYYARE 143 (511)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.+.
T Consensus 144 ~~~~~~~ 150 (511)
T TIGR01237 144 MERLAGQ 150 (511)
T ss_pred HHHhcCc
Confidence 8877653
No 14
>PLN02278 succinic semialdehyde dehydrogenase
Probab=99.62 E-value=6.5e-15 Score=106.47 Aligned_cols=84 Identities=33% Similarity=0.537 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.||++|+.||+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++..||..++..+++++..
T Consensus 60 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~Ev~~~i~~~~~~~~~ 136 (498)
T PLN02278 60 GRAETNDAIASAHDAFP---SWSKLTASERSKILRRWYDLIIANKEDLAQLMTLEQGKPLKEAIGEVAYGASFLEYFAEE 136 (498)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999 999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+..+.+.
T Consensus 137 ~~~~~g~ 143 (498)
T PLN02278 137 AKRVYGD 143 (498)
T ss_pred HHHhcCc
Confidence 8776554
No 15
>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like. Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.
Probab=99.61 E-value=1.1e-14 Score=104.38 Aligned_cols=85 Identities=29% Similarity=0.532 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+||+.||+.|++||+.+ .|+. ++.+|.++|.+++++|++|+++|+.+++.|+|||..++..||..+++.++||+..
T Consensus 17 ~~~~v~~av~~A~~a~~~~-~w~~-~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~Ev~~~i~~l~~~~~~ 94 (455)
T cd07120 17 GVAEAEAAIAAARRAFDET-DWAH-DPRLRARVLLELADAFEANAERLARLLALENGKILGEARFEISGAISELRYYAGL 94 (455)
T ss_pred CHHHHHHHHHHHHHhcCCC-ccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999810 2998 8999999999999999999999999999999999999989999999999999998
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.+..+.
T Consensus 95 ~~~~~g~ 101 (455)
T cd07120 95 ARTEAGR 101 (455)
T ss_pred HHHhcCc
Confidence 8776554
No 16
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=99.61 E-value=1.4e-14 Score=103.74 Aligned_cols=85 Identities=34% Similarity=0.594 Sum_probs=77.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+||+.||+.|++||+.+ .|+++|.++|.++|.+++++|.+|+++|+.+++.|+|||+.++..|+..+++.++|++..
T Consensus 17 ~~~~v~~av~~A~~a~~~~-~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~i~~~~~~~~~ 95 (454)
T cd07118 17 TVEDVDAAVAAARKAFDKG-PWPRMSGAERAAVLLKVADLIRARRERLALIETLESGKPISQARGEIEGAADLWRYAASL 95 (454)
T ss_pred CHHHHHHHHHHHHHHcCCC-ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999711 399999999999999999999999999999999999999999988999999999999987
Q ss_pred hhhhcC
Q psy13780 81 CDKIEG 86 (100)
Q Consensus 81 ~~~~~~ 86 (100)
...+.+
T Consensus 96 ~~~~~~ 101 (454)
T cd07118 96 ARTLHG 101 (454)
T ss_pred HHHhcC
Confidence 665544
No 17
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=99.61 E-value=9.2e-15 Score=104.56 Aligned_cols=84 Identities=32% Similarity=0.407 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|++||+ .|+.+|.++|.++|.+++++|.+|+++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus 19 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~ 95 (456)
T cd07145 19 SREEVREAIEVAEKAKD---VMSNLPAYKRYKILMKVAELIERRKEELAKLLTIEVGKPIKQSRVEVERTIRLFKLAAEE 95 (456)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999 999999999999999999999999999999999999999999989999999999999988
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+..+.+.
T Consensus 96 ~~~~~~~ 102 (456)
T cd07145 96 AKVLRGE 102 (456)
T ss_pred HHHhcCc
Confidence 7655443
No 18
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=99.61 E-value=1.5e-14 Score=104.53 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.+++.++++|. .|+.+|..+|.++|.+++++|++|+++|+++++.|+|||..++.. |+..++..++++++
T Consensus 5 ~~~~i~~av~~a~~a~~---~~~~~~~~~R~~~L~~l~~~l~~~~~~i~~a~~~d~Gk~~~ea~~~Ev~~~~~~i~~~~~ 81 (493)
T PTZ00381 5 NPEIIPPIVKKLKESFL---TGKTRPLEFRKQQLRNLLRMLEENKQEFSEAVHKDLGRHPFETKMTEVLLTVAEIEHLLK 81 (493)
T ss_pred CHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999976 99999999999999
Q ss_pred chhhhcCcc
Q psy13780 80 WCDKIEGST 88 (100)
Q Consensus 80 ~~~~~~~~~ 88 (100)
++.+|+...
T Consensus 82 ~~~~~~~~~ 90 (493)
T PTZ00381 82 HLDEYLKPE 90 (493)
T ss_pred HHHHHhCCc
Confidence 998886543
No 19
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=99.61 E-value=8.1e-15 Score=106.29 Aligned_cols=79 Identities=22% Similarity=0.209 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHH-hcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhch
Q psy13780 3 ADVDKAVESAKAA-FKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWC 81 (100)
Q Consensus 3 ~~v~~ai~~a~~a-~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~ 81 (100)
+|++.||++|+.| |+ .|+.+|+.+|+++|.+++++|++|+++|+.+ +.|+|||+.++..||..+++.++||+..+
T Consensus 36 ~dv~~Av~~A~~A~~~---~W~~~~~~~Ra~~L~~~a~~l~~~~~~la~l-~~e~Gkp~~ea~~Ev~~~~~~~~~~a~~a 111 (513)
T cd07128 36 LDFAAAVAYAREKGGP---ALRALTFHERAAMLKALAKYLMERKEDLYAL-SAATGATRRDSWIDIDGGIGTLFAYASLG 111 (513)
T ss_pred HHHHHHHHHHHHhhhc---hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999997 78 9999999999999999999999999999996 89999999999899999999999999998
Q ss_pred hhhc
Q psy13780 82 DKIE 85 (100)
Q Consensus 82 ~~~~ 85 (100)
.++.
T Consensus 112 ~~~~ 115 (513)
T cd07128 112 RREL 115 (513)
T ss_pred Hhhc
Confidence 7765
No 20
>PLN02203 aldehyde dehydrogenase
Probab=99.60 E-value=9.6e-15 Score=105.28 Aligned_cols=83 Identities=13% Similarity=0.126 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhc
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGW 80 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~ 80 (100)
.+||+.|+++|+.||+ .|+.+|+.+|.++|++++++|++|+++|+++++.|+|||..++.. ||..++..++|+++.
T Consensus 5 ~~~v~~av~~a~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~~~~ 81 (484)
T PLN02203 5 GETLEGSVAELRETYE---SGRTRSLEWRKSQLKGLLRLLKDNEEAIFKALHQDLGKHRVEAYRDEVGVLTKSANLALSN 81 (484)
T ss_pred HHHHHHHHHHHHHHHH---hcCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999 999999999999999999999999999999999999999999964 999999999999998
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.+.
T Consensus 82 ~~~~~~~ 88 (484)
T PLN02203 82 LKKWMAP 88 (484)
T ss_pred HHHHhcc
Confidence 8877543
No 21
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=99.60 E-value=1.3e-14 Score=105.22 Aligned_cols=84 Identities=27% Similarity=0.436 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|++||+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus 67 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~ev~~~i~~~~~~~~~ 143 (512)
T cd07124 67 TKEEAEAAVQAARAAFP---TWRRTPPEERARLLLRAAALLRRRRFELAAWMVLEVGKNWAEADADVAEAIDFLEYYARE 143 (512)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999 999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.+.
T Consensus 144 ~~~~~~~ 150 (512)
T cd07124 144 MLRLRGF 150 (512)
T ss_pred HHHhcCc
Confidence 8887544
No 22
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=99.60 E-value=1.1e-14 Score=105.41 Aligned_cols=83 Identities=29% Similarity=0.433 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+||+.|+++|++||+ .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus 72 ~~~dv~~av~~A~~a~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~i~~l~~~a~~ 148 (500)
T TIGR01238 72 NLAHVQAAIDSAQQAFP---TWNATPAKERAAKLDRLADLLELHMPELMALCVREAGKTIHNAIAEVREAVDFCRYYAKQ 148 (500)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999998
Q ss_pred hhhhcC
Q psy13780 81 CDKIEG 86 (100)
Q Consensus 81 ~~~~~~ 86 (100)
...+.+
T Consensus 149 ~~~~~~ 154 (500)
T TIGR01238 149 VRDVLG 154 (500)
T ss_pred HHHhcC
Confidence 876654
No 23
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=99.60 E-value=1.5e-14 Score=103.98 Aligned_cols=84 Identities=23% Similarity=0.456 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|++||+ .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus 32 ~~~~v~~av~~a~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 108 (474)
T cd07130 32 TPEDYESTIKAAQEAFK---EWRDVPAPKRGEIVRQIGDALRKKKEALGKLVSLEMGKILPEGLGEVQEMIDICDFAVGL 108 (474)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999987
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
...+.+.
T Consensus 109 ~~~~~~~ 115 (474)
T cd07130 109 SRQLYGL 115 (474)
T ss_pred HHHhcCc
Confidence 6655443
No 24
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=99.59 E-value=1.4e-14 Score=104.18 Aligned_cols=83 Identities=47% Similarity=0.775 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||+.++.. |+..++..+++|+.
T Consensus 36 ~~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~i~~l~~~a~ 112 (475)
T cd07117 36 TDADVDRAVKAAQEAFK---TWRKTTVAERANILNKIADIIDENKELLAMVETLDNGKPIRETRAVDIPLAADHFRYFAG 112 (475)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999986 99999999999998
Q ss_pred chhhhcC
Q psy13780 80 WCDKIEG 86 (100)
Q Consensus 80 ~~~~~~~ 86 (100)
.+....+
T Consensus 113 ~~~~~~~ 119 (475)
T cd07117 113 VIRAEEG 119 (475)
T ss_pred HHHHhcC
Confidence 8765544
No 25
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=99.59 E-value=1.9e-14 Score=102.73 Aligned_cols=84 Identities=26% Similarity=0.508 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+||+.+|+.|++||+ .|+.+|..+|.++|.+++++|.+++++|+++++.|+|||+.++..|+..++..+++++..
T Consensus 19 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~ 95 (451)
T cd07150 19 SRQDAERAIAAAYDAFP---AWAATTPSERERILLKAAEIMERRADDLIDLLIDEGGSTYGKAWFETTFTPELLRAAAGE 95 (451)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999 999999999999999999999999999999999999999999988999999999999998
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+..+.+.
T Consensus 96 ~~~~~~~ 102 (451)
T cd07150 96 CRRVRGE 102 (451)
T ss_pred HHHhcCc
Confidence 8776544
No 26
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=99.59 E-value=1.9e-14 Score=102.96 Aligned_cols=84 Identities=23% Similarity=0.342 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|++||+ .|+.+|.++|.++|.+++++|.+++++|+++++.|+|||..++..|+..++..++|++..
T Consensus 16 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 92 (454)
T cd07101 16 TPADVEAAFARARAAQR---AWAARPFAERAAVFLRFHDLVLERRDELLDLIQLETGKARRHAFEEVLDVAIVARYYARR 92 (454)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.++
T Consensus 93 ~~~~~~~ 99 (454)
T cd07101 93 AERLLKP 99 (454)
T ss_pred HHHHhCC
Confidence 8877654
No 27
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=99.59 E-value=2.3e-14 Score=103.50 Aligned_cols=87 Identities=38% Similarity=0.619 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.|+++|++||..+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++.. ||..+++.++|++.
T Consensus 55 ~~~dv~~av~aA~~a~~~~-~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~~~~l~~~a~ 133 (494)
T PRK09847 55 KSVDIDRAVSAARGVFERG-DWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDIPGAARAIRWYAE 133 (494)
T ss_pred CHHHHHHHHHHHHHhcCCC-ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999610 499999999999999999999999999999999999999998765 99999999999999
Q ss_pred chhhhcCcc
Q psy13780 80 WCDKIEGST 88 (100)
Q Consensus 80 ~~~~~~~~~ 88 (100)
.+.++.+..
T Consensus 134 ~~~~~~g~~ 142 (494)
T PRK09847 134 AIDKVYGEV 142 (494)
T ss_pred HHHHhcCcc
Confidence 988776543
No 28
>TIGR03374 ABALDH 1-pyrroline dehydrogenase. Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Probab=99.59 E-value=2.2e-14 Score=103.21 Aligned_cols=83 Identities=34% Similarity=0.585 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.|++.|++||+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++.. |+..+++.++|++.
T Consensus 36 ~~~~v~~av~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~a~ 112 (472)
T TIGR03374 36 SAEQVDAAVRAADAAFA---EWGQTTPKARAECLLKLADVIEENAQVFAELESRNCGKPLHSVFNDEIPAIVDVFRFFAG 112 (472)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999 999999999999999999999999999999999999999999875 99999999999998
Q ss_pred chhhhcC
Q psy13780 80 WCDKIEG 86 (100)
Q Consensus 80 ~~~~~~~ 86 (100)
.+..+.+
T Consensus 113 ~~~~~~~ 119 (472)
T TIGR03374 113 AARCLSG 119 (472)
T ss_pred HHHHhcC
Confidence 8765544
No 29
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional
Probab=99.59 E-value=2.3e-14 Score=104.00 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|+.||+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||+.++..|+..+++.+++|+..
T Consensus 71 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 147 (514)
T PRK03137 71 TKELAEKAMQAALEAFE---TWKKWSPEDRARILLRAAAIIRRRKHEFSAWLVKEAGKPWAEADADTAEAIDFLEYYARQ 147 (514)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhc
Q psy13780 81 CDKIE 85 (100)
Q Consensus 81 ~~~~~ 85 (100)
+.++.
T Consensus 148 ~~~~~ 152 (514)
T PRK03137 148 MLKLA 152 (514)
T ss_pred HHHhc
Confidence 87764
No 30
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=99.59 E-value=2.5e-14 Score=102.67 Aligned_cols=84 Identities=24% Similarity=0.304 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|++||+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus 30 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~Ev~~~~~~~~~~~~~ 106 (465)
T cd07151 30 SKEDVDEAYRAAAAAQK---EWAATLPQERAEILEKAAQILEERRDEIVEWLIRESGSTRIKANIEWGAAMAITREAATF 106 (465)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999 999999999999999999999999999999999999999999988999999999999988
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
...+.+.
T Consensus 107 ~~~~~~~ 113 (465)
T cd07151 107 PLRMEGR 113 (465)
T ss_pred HHHhcCc
Confidence 7665443
No 31
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=99.59 E-value=1.4e-14 Score=103.70 Aligned_cols=85 Identities=38% Similarity=0.638 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++++|++||+ .|+.+|..+|.++|.+++++|.+|.++|+.+++.|+|||+.++..|+..+++.++|++..
T Consensus 27 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~iL~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 103 (462)
T PF00171_consen 27 TAEDVDRAVEAARAAFK---EWSKLPAAERARILERFADLLEERRDELAELIALETGKPIAEARGEVDRAIDFLRYYADA 103 (462)
T ss_dssp SHHHHHHHHHHHHHHHH---HHTTSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhhhhhc
Confidence 46799999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.+..
T Consensus 104 ~~~~~~~~ 111 (462)
T PF00171_consen 104 ARKLAGEV 111 (462)
T ss_dssp HHHHTEEE
T ss_pred ccceehhh
Confidence 98866543
No 32
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=99.58 E-value=1.6e-14 Score=102.80 Aligned_cols=81 Identities=27% Similarity=0.408 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhh
Q psy13780 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDK 83 (100)
Q Consensus 4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~ 83 (100)
|++.+|+.|+.||+ .|+.+|..+|.++|.+++++|.+|.++|+.+++.|+|||..++..||..++..++|++..+..
T Consensus 1 ~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~ev~~~~~~~~~~~~~~~~ 77 (431)
T cd07095 1 QVDAAVAAARAAFP---GWAALSLEERAAILRRFAELLKANKEELARLISRETGKPLWEAQTEVAAMAGKIDISIKAYHE 77 (431)
T ss_pred CHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999 999999999999999999999999999999999999999999988999999999999988877
Q ss_pred hcCc
Q psy13780 84 IEGS 87 (100)
Q Consensus 84 ~~~~ 87 (100)
+.+.
T Consensus 78 ~~~~ 81 (431)
T cd07095 78 RTGE 81 (431)
T ss_pred hcCC
Confidence 7654
No 33
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=99.58 E-value=2e-14 Score=104.01 Aligned_cols=84 Identities=30% Similarity=0.443 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+||+.+++.|++||+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||+.++..|+..++..+++|+..
T Consensus 53 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 129 (500)
T cd07083 53 DKAEAEAALEAAWAAFK---TWKDWPQEDRARLLLKAADLLRRRRRELIATLTYEVGKNWVEAIDDVAEAIDFIRYYARA 129 (500)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999 999999999999999999999999999999999999999999888999999999999999
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.+.
T Consensus 130 ~~~~~~~ 136 (500)
T cd07083 130 ALRLRYP 136 (500)
T ss_pred HHHhcCc
Confidence 8877654
No 34
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=99.58 E-value=2.2e-14 Score=110.59 Aligned_cols=83 Identities=28% Similarity=0.470 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.++|+.||+.|++||+ .|+.+|+.+|.++|.+++++|++++++|+.+++.|+|||+.++..||..++++|+||+..
T Consensus 583 ~~~~v~~Ai~aA~~A~~---~W~~~~~~~Ra~iL~kaAdll~~~~~eL~~l~~~E~GK~~~~a~~EV~eaid~lr~ya~~ 659 (1038)
T PRK11904 583 DAEQVEQALAAARAAFP---AWSRTPVEERAAILERAADLLEANRAELIALCVREAGKTLQDAIAEVREAVDFCRYYAAQ 659 (1038)
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhhhcC
Q psy13780 81 CDKIEG 86 (100)
Q Consensus 81 ~~~~~~ 86 (100)
+.++.+
T Consensus 660 a~~~~~ 665 (1038)
T PRK11904 660 ARRLFG 665 (1038)
T ss_pred HHHhhC
Confidence 887754
No 35
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=99.58 E-value=3.6e-14 Score=103.46 Aligned_cols=86 Identities=45% Similarity=0.818 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|+++||++|++||+.+ .|+.++..+|.++|.+++++|++|+++|+++++.|+|||+.++.. ||..+++.++||+.
T Consensus 93 ~~~dv~~Av~aA~~a~~~~-~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~GK~~~~a~~~Ev~~~~~~l~~~a~ 171 (538)
T PLN02466 93 DAEDVNRAVAAARKAFDEG-PWPKMTAYERSRILLRFADLLEKHNDELAALETWDNGKPYEQSAKAELPMFARLFRYYAG 171 (538)
T ss_pred CHHHHHHHHHHHHHHcCcC-ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999711 499999999999999999999999999999999999999999865 99999999999998
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
...+..+.
T Consensus 172 ~~~~~~g~ 179 (538)
T PLN02466 172 WADKIHGL 179 (538)
T ss_pred HHHHhcCc
Confidence 87766544
No 36
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=99.58 E-value=3.3e-14 Score=102.36 Aligned_cols=84 Identities=29% Similarity=0.474 Sum_probs=78.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++++|++||+ .|+.+|.++|.++|.+++++|.+++++|+++++.|+|||+.++..|+..++..++|++..
T Consensus 33 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 109 (478)
T cd07086 33 SPEDVEAAVAAAREAFK---EWRKVPAPRRGEIVRQIGEALRKKKEALGRLVSLEMGKILPEGLGEVQEMIDICDYAVGL 109 (478)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999 999999999999999999999999999999999999999999988999999999999998
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+..+.+.
T Consensus 110 ~~~~~g~ 116 (478)
T cd07086 110 SRMLYGL 116 (478)
T ss_pred HHHhcCc
Confidence 8776554
No 37
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=99.58 E-value=3.2e-14 Score=102.66 Aligned_cols=86 Identities=47% Similarity=0.928 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.|++.|++||..+ .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||..++.. |+..+++.++||+.
T Consensus 41 ~~~~v~~av~~A~~A~~~~-~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a~ 119 (486)
T cd07140 41 TVEDVDRAVAAAKEAFENG-EWGKMNARDRGRLMYRLADLMEEHQEELATIESLDSGAVYTLALKTHVGMSIQTFRYFAG 119 (486)
T ss_pred CHHHHHHHHHHHHHhcCCC-chhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999711 499999999999999999999999999999999999999999974 99999999999998
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+.++.+.
T Consensus 120 ~~~~~~g~ 127 (486)
T cd07140 120 WCDKIQGK 127 (486)
T ss_pred HHHHhcCc
Confidence 87766544
No 38
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.
Probab=99.57 E-value=3.1e-14 Score=103.68 Aligned_cols=84 Identities=24% Similarity=0.300 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHcCCChHHHHhh-HHHHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELID-KNVDYLASLETLDNGKPYEDSIFD-LGCASDTFRYFA 78 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~-~~~~~l~~~~~~e~Gk~~~~a~~e-v~~~~~~~~~~a 78 (100)
+.+||+.||++|+++|+ .|+.+|+.+|.++|.+++++|+ +++++|+.+++.|+|||+.++..+ +...++.++|++
T Consensus 67 ~~~~v~~av~~A~~a~~---~W~~~~~~~R~~~L~k~a~~l~~~~~~~la~~~~~e~GK~~~~a~~e~v~~~i~~~~~~a 143 (533)
T TIGR01236 67 TEEDAAKAVEAALDAKK---DWSALPFYDRAAIFLKAADLLSGPYREEILAATMLGQSKNVYQAEIDAVAELIDFFRFNV 143 (533)
T ss_pred CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHcCCcHHHHhHhHHHHHHHHHHHHH
Confidence 46799999999999999 9999999999999999999999 599999999999999999999885 999999999999
Q ss_pred hchhhhcCc
Q psy13780 79 GWCDKIEGS 87 (100)
Q Consensus 79 ~~~~~~~~~ 87 (100)
..+.++.+.
T Consensus 144 ~~a~~~~~~ 152 (533)
T TIGR01236 144 KYARELYEQ 152 (533)
T ss_pred HHHHHhcCc
Confidence 988777554
No 39
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=99.57 E-value=4e-14 Score=102.49 Aligned_cols=86 Identities=38% Similarity=0.688 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.||+.|++||+.+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++.. |+..++..++|++.
T Consensus 56 ~~~~v~~av~~A~~A~~~~-~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a~ 134 (501)
T PLN02766 56 DKEDVDLAVKAAREAFDHG-PWPRMSGFERGRIMMKFADLIEEHIEELAALDTIDAGKLFALGKAVDIPAAAGLLRYYAG 134 (501)
T ss_pred CHHHHHHHHHHHHHhcCCC-ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999711 499999999999999999999999999999999999999999875 99999999999999
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+.++.+.
T Consensus 135 ~~~~~~g~ 142 (501)
T PLN02766 135 AADKIHGE 142 (501)
T ss_pred HHHHhcCc
Confidence 88776654
No 40
>KOG2450|consensus
Probab=99.57 E-value=1.2e-14 Score=103.39 Aligned_cols=89 Identities=56% Similarity=0.942 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH-hhHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI-FDLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~~~~~a~ 79 (100)
+.+||+.|+++|++||+. +.|++++..+|..+|+++++++++++++|+.+.+.+.|||+.++. .+|..+++.++||+.
T Consensus 56 ~~~dVd~aV~aAr~Af~~-~~W~~~~~~~R~~~L~~~Adlie~~~~~lA~~E~~d~GKp~~~a~~~Dl~~~~~~~ry~ag 134 (501)
T KOG2450|consen 56 TEEDVDEAVKAARSAFKL-VDWAKRDAAERGRLLRKLADLIEQDADVLAALEVLDNGKPYPEALVSDLPPAIDCFRYYAG 134 (501)
T ss_pred cHHHHHHHHHHHHHhcCc-CccccCCHHHHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhhhhcCchhhhhHHHhhcc
Confidence 468999999999999983 259999999999999999999999999999999999999999999 599999999999999
Q ss_pred chhhhcCcccC
Q psy13780 80 WCDKIEGSTIP 90 (100)
Q Consensus 80 ~~~~~~~~~~~ 90 (100)
.+.+..+...+
T Consensus 135 ~ad~~~~~~~~ 145 (501)
T KOG2450|consen 135 WADKIHGSTIP 145 (501)
T ss_pred chhhcccccCC
Confidence 99888555444
No 41
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.
Probab=99.57 E-value=3.8e-14 Score=102.99 Aligned_cols=84 Identities=23% Similarity=0.261 Sum_probs=77.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDK-NVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFA 78 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~-~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a 78 (100)
+.+||+.||++|++||. .|+.+|..+|.++|.+++++|.+ ++++|+.+++.|+|||+.++.. ++...++.++|++
T Consensus 67 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~~ela~~~~~e~Gk~~~~a~~~~v~~~~~~~~~~a 143 (522)
T cd07123 67 DAALVEKAIEAALEARK---EWARMPFEDRAAIFLKAADLLSGKYRYELNAATMLGQGKNVWQAEIDAACELIDFLRFNV 143 (522)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHhcCCCHHHHhHHHHHHHHHHHHHHH
Confidence 46799999999999999 99999999999999999999996 8999999999999999999876 8889999999999
Q ss_pred hchhhhcCc
Q psy13780 79 GWCDKIEGS 87 (100)
Q Consensus 79 ~~~~~~~~~ 87 (100)
..+.++.+.
T Consensus 144 ~~~~~~~~~ 152 (522)
T cd07123 144 KYAEELYAQ 152 (522)
T ss_pred HHHHHhcCc
Confidence 988776544
No 42
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=99.57 E-value=3.5e-14 Score=101.30 Aligned_cols=83 Identities=25% Similarity=0.386 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.++++.++++|+.||+ .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||..++..|+..++..+++++..
T Consensus 11 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~i~~l~~~~~~ 87 (443)
T cd07152 11 DAADVDRAAARAAAAQR---AWAATPPRERAAVLRRAADLLEEHADEIADWIVRESGSIRPKAGFEVGAAIGELHEAAGL 87 (443)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999987
Q ss_pred hhhhcC
Q psy13780 81 CDKIEG 86 (100)
Q Consensus 81 ~~~~~~ 86 (100)
.....+
T Consensus 88 ~~~~~~ 93 (443)
T cd07152 88 PTQPQG 93 (443)
T ss_pred HHHhCC
Confidence 655433
No 43
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=99.57 E-value=4e-14 Score=102.00 Aligned_cols=84 Identities=44% Similarity=0.718 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.||++|++||+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||+.++.. |+..+++.+++++.
T Consensus 36 ~~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~ 112 (480)
T cd07559 36 TAEDVDLAVDAAHEAFK---TWGKTSVAERANILNKIADRIEENLELLAVAETLDNGKPIRETLAADIPLAIDHFRYFAG 112 (480)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999976 99999999999999
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+....+.
T Consensus 113 ~~~~~~~~ 120 (480)
T cd07559 113 VIRAQEGS 120 (480)
T ss_pred HHHHhcCc
Confidence 87665443
No 44
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=99.57 E-value=4.6e-14 Score=101.55 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|+.||+ .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||+.++..|+..+++.++|++..
T Consensus 36 ~~~~v~~ai~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~i~~~~~~~~~ 112 (477)
T TIGR01722 36 SVDEVDAAVASARETFL---TWGQTSLAQRTSVLLRYQALLKEHRDEIAELITAEHGKTHSDALGDVARGLEVVEHACGV 112 (477)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999987
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
...+.++
T Consensus 113 ~~~~~g~ 119 (477)
T TIGR01722 113 NSLLKGE 119 (477)
T ss_pred HHHhcCc
Confidence 7666554
No 45
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=99.57 E-value=3.8e-14 Score=102.05 Aligned_cols=84 Identities=37% Similarity=0.637 Sum_probs=77.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.||++|++||+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++.. |+..+++.+++|+.
T Consensus 36 ~~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~ 112 (479)
T cd07116 36 TAEDIELALDAAHAAKE---AWGKTSVAERANILNKIADRMEANLEMLAVAETWDNGKPVRETLAADIPLAIDHFRYFAG 112 (479)
T ss_pred CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999875 99999999999999
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+....+.
T Consensus 113 ~~~~~~~~ 120 (479)
T cd07116 113 CIRAQEGS 120 (479)
T ss_pred hHHHcCCe
Confidence 87665443
No 46
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=99.57 E-value=4.7e-14 Score=100.83 Aligned_cols=84 Identities=32% Similarity=0.484 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.++++.++++|++||+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..++..++|++..
T Consensus 17 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~ 93 (448)
T TIGR01780 17 GVEEAEAAIRAAYEAFK---TWKNTTAKERSSLLRKWYNLMMENKDDLARLITLENGKPLKEAKGEILYAASFLEWFAEE 93 (448)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999 999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
..++.+.
T Consensus 94 ~~~~~~~ 100 (448)
T TIGR01780 94 AKRVYGD 100 (448)
T ss_pred HHHhcCc
Confidence 7766554
No 47
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.
Probab=99.57 E-value=4e-14 Score=101.34 Aligned_cols=84 Identities=33% Similarity=0.574 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|+.||+ .|+.+|..+|.++|.+++++|.++.++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus 17 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~ 93 (456)
T cd07107 17 SAADVDRAVAAARAAFP---EWRATTPLERARMLRELATRLREHAEELALIDALDCGNPVSAMLGDVMVAAALLDYFAGL 93 (456)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999988999999999999987
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
...+.+.
T Consensus 94 ~~~~~~~ 100 (456)
T cd07107 94 VTELKGE 100 (456)
T ss_pred HHHhCCc
Confidence 7655544
No 48
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=99.56 E-value=4.4e-14 Score=101.26 Aligned_cols=85 Identities=26% Similarity=0.345 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccc-cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWR-NLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFA 78 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~-~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a 78 (100)
+.+|+++++++|++||. .|+ .+|..+|.++|.+++++|++++++|+.+++.|+|||..++.. |+..+++.++|++
T Consensus 17 ~~~~v~~av~~A~~a~~---~w~w~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~i~~~~~~~ 93 (459)
T cd07089 17 GAADVDAAIAAARRAFD---TGDWSTDAEERARCLRQLHEALEARKEELRALLVAEVGAPVMTARAMQVDGPIGHLRYFA 93 (459)
T ss_pred CHHHHHHHHHHHHHHHH---hhhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999 999999999999999999999999999999999999987755 9999999999999
Q ss_pred hchhhhcCcc
Q psy13780 79 GWCDKIEGST 88 (100)
Q Consensus 79 ~~~~~~~~~~ 88 (100)
+.+.++.++.
T Consensus 94 ~~~~~~~~~~ 103 (459)
T cd07089 94 DLADSFPWEF 103 (459)
T ss_pred HHHHHhcCce
Confidence 9988876543
No 49
>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]
Probab=99.56 E-value=4.1e-14 Score=102.00 Aligned_cols=83 Identities=29% Similarity=0.473 Sum_probs=78.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|+++|++.|..+++ .|+.+|+.+|+.+|.+++++|+.+..+|..++++|.||+...+..||..++++|+||+..
T Consensus 148 ~~~~v~~A~~~A~~a~p---~W~atp~~eRAaiL~raAdlme~~m~~L~~L~~REAGKtl~naIAEVREAVDFlrYYA~~ 224 (769)
T COG4230 148 TEADVEQALEAAVAAAP---IWSATPPAERAAILERAADLMEAQMPQLMGLLVREAGKTLSNAIAEVREAVDFLRYYAGQ 224 (769)
T ss_pred CHHHHHHHHHHHHhhCc---ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcC
Q psy13780 81 CDKIEG 86 (100)
Q Consensus 81 ~~~~~~ 86 (100)
++.-.+
T Consensus 225 ar~~~g 230 (769)
T COG4230 225 ARDTFG 230 (769)
T ss_pred HhcccC
Confidence 875443
No 50
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=99.56 E-value=5.2e-14 Score=101.28 Aligned_cols=84 Identities=30% Similarity=0.469 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++++|++||+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..++..++|++..
T Consensus 36 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 112 (478)
T cd07085 36 TAEEVDAAVAAAKAAFP---AWSATPVLKRQQVMFKFRQLLEENLDELARLITLEHGKTLADARGDVLRGLEVVEFACSI 112 (478)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999 999999999999999999999999999999999999999999988999999999999887
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
.....++
T Consensus 113 ~~~~~g~ 119 (478)
T cd07085 113 PHLLKGE 119 (478)
T ss_pred HHHhCCe
Confidence 6555443
No 51
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=99.56 E-value=6.4e-14 Score=100.81 Aligned_cols=86 Identities=44% Similarity=0.864 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.+|++|++||+.+ .|+++|..+|.++|.+++++|.+|+++|+++++.|+|||..++.. |+..+++.+++++.
T Consensus 39 ~~~~v~~av~~A~~a~~~~-~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a~ 117 (476)
T cd07142 39 DAEDVDRAVKAARKAFDEG-PWPRMTGYERSRILLRFADLLEKHADELAALETWDNGKPYEQARYAEVPLAARLFRYYAG 117 (476)
T ss_pred CHHHHHHHHHHHHHhcCCC-chhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999710 399999999999999999999999999999999999999999875 99999999999998
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+....+.
T Consensus 118 ~~~~~~g~ 125 (476)
T cd07142 118 WADKIHGM 125 (476)
T ss_pred HHHHhcCc
Confidence 87665544
No 52
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=99.56 E-value=4e-14 Score=102.11 Aligned_cols=84 Identities=25% Similarity=0.394 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++++|++||+ .|+++|..+|.++|.+++++|.+++++|+++++.|+|||..++..|+..+++.+++++..
T Consensus 35 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 111 (487)
T PRK09457 35 TAAQVDAAVRAARAAFP---AWARLSFEERQAIVERFAALLEENKEELAEVIARETGKPLWEAATEVTAMINKIAISIQA 111 (487)
T ss_pred CHHHHHHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999888
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.+.
T Consensus 112 ~~~~~~~ 118 (487)
T PRK09457 112 YHERTGE 118 (487)
T ss_pred HHHhcCc
Confidence 7666544
No 53
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=99.56 E-value=4.5e-14 Score=101.08 Aligned_cols=84 Identities=40% Similarity=0.659 Sum_probs=78.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|+.||+ .|+.+|..+|.++|.++++.|.++.++|+++++.|+|||..++..|+..+++.++|++..
T Consensus 17 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 93 (457)
T cd07090 17 GAEDVDLAVKSAKAAQK---EWSATSGMERGRILRKAADLLRERNDEIARLETIDNGKPIEEARVDIDSSADCLEYYAGL 93 (457)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999988
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+..+.+.
T Consensus 94 ~~~~~~~ 100 (457)
T cd07090 94 APTLSGE 100 (457)
T ss_pred HHHhCCe
Confidence 7765443
No 54
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=99.56 E-value=4.6e-14 Score=102.61 Aligned_cols=84 Identities=25% Similarity=0.373 Sum_probs=78.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+|+.|+.||+ .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..++..++|++..
T Consensus 52 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 128 (524)
T PRK09407 52 TAADVEAAFARARAAQR---AWAATPVRERAAVLLRFHDLVLENREELLDLVQLETGKARRHAFEEVLDVALTARYYARR 128 (524)
T ss_pred CHHHHHHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999998
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.++
T Consensus 129 ~~~~~~~ 135 (524)
T PRK09407 129 APKLLAP 135 (524)
T ss_pred HHHhhCC
Confidence 8777654
No 55
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=99.56 E-value=4.9e-14 Score=100.76 Aligned_cols=85 Identities=27% Similarity=0.401 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|+.||+ .|+.+|..+|.++|.+++++|.++.++|+++++.|+|||..++..|+..++..+++++..
T Consensus 19 ~~~~v~~av~~a~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~ 95 (453)
T cd07094 19 DRADAEEALATARAGAE---NRRALPPHERMAILERAADLLKKRAEEFAKIIACEGGKPIKDARVEVDRAIDTLRLAAEE 95 (453)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999 999999999999999999999999999999999999999999988999999999999998
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.+..
T Consensus 96 ~~~~~~~~ 103 (453)
T cd07094 96 AERIRGEE 103 (453)
T ss_pred HHHhcCcc
Confidence 88776543
No 56
>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.56 E-value=4.2e-14 Score=102.25 Aligned_cols=82 Identities=28% Similarity=0.327 Sum_probs=77.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|++||+ .|+.+|..+|.++|.++++.|++++++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus 51 ~~~dv~~av~~A~~A~~---~W~~~~~~~R~~iL~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~Ev~~~~~~l~~~a~~ 127 (496)
T PLN00412 51 TQEEVNKAMESAKAAQK---AWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLISYTAEE 127 (496)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999988
Q ss_pred hhhhc
Q psy13780 81 CDKIE 85 (100)
Q Consensus 81 ~~~~~ 85 (100)
+.++.
T Consensus 128 ~~~~~ 132 (496)
T PLN00412 128 GVRIL 132 (496)
T ss_pred HHHHh
Confidence 76654
No 57
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=99.56 E-value=5.5e-14 Score=100.83 Aligned_cols=84 Identities=37% Similarity=0.581 Sum_probs=78.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|+.||+ .|+.+|..+|.++|.++++.|.++.++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus 33 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~ 109 (468)
T cd07088 33 TAEDADRAVDAAEAAQK---AWERLPAIERAAYLRKLADLIRENADELAKLIVEEQGKTLSLARVEVEFTADYIDYMAEW 109 (468)
T ss_pred CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999 999999999999999999999999999999999999999999988999999999999988
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.+..+.
T Consensus 110 a~~~~~~ 116 (468)
T cd07088 110 ARRIEGE 116 (468)
T ss_pred HHHhCCc
Confidence 7665544
No 58
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=99.56 E-value=4.6e-14 Score=101.80 Aligned_cols=84 Identities=36% Similarity=0.647 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.++++|++||+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++.. |+..+++.+++++.
T Consensus 42 ~~~dv~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~~~ 118 (488)
T PRK13252 42 TPADVEAAVASAKQGQK---IWAAMTAMERSRILRRAVDILRERNDELAALETLDTGKPIQETSVVDIVTGADVLEYYAG 118 (488)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999976 99999999999999
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+....+.
T Consensus 119 ~~~~~~g~ 126 (488)
T PRK13252 119 LAPALEGE 126 (488)
T ss_pred HHHHhcCc
Confidence 88765543
No 59
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=99.56 E-value=9.2e-14 Score=99.52 Aligned_cols=84 Identities=30% Similarity=0.332 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCc-cccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSV-WRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~-w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~ 79 (100)
+.+|++.+++.|++||+ . |+.+|..+|.++|.+++++|.++.++|+.+++.|+|||..++..|+...++.+++++.
T Consensus 19 ~~~~v~~av~~A~~a~~---~~~~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~i~~~~~~~~ 95 (455)
T cd07148 19 DWAAIDKALDTAHALFL---DRNNWLPAHERIAILERLADLMEERADELALLIAREGGKPLVDAKVEVTRAIDGVELAAD 95 (455)
T ss_pred CHHHHHHHHHHHHHHHh---hcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999998 7 4679999999999999999999999999999999999999998899999999999999
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+.++.+.
T Consensus 96 ~~~~~~~~ 103 (455)
T cd07148 96 ELGQLGGR 103 (455)
T ss_pred HHHHhcCc
Confidence 98887654
No 60
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=99.56 E-value=5.1e-14 Score=100.63 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++++|+.||+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..++..+++++..
T Consensus 19 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 95 (452)
T cd07147 19 GPDDIEEAIAAAVKAFR---PMRALPAHRRAAILLHCVARLEERFEELAETIVLEAGKPIKDARGEVARAIDTFRIAAEE 95 (452)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999 999999999999999999999999999999999999999999998999999999999998
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.+.
T Consensus 96 ~~~~~~~ 102 (452)
T cd07147 96 ATRIYGE 102 (452)
T ss_pred HHHhCCc
Confidence 8766544
No 61
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=99.56 E-value=6.1e-14 Score=101.84 Aligned_cols=84 Identities=29% Similarity=0.400 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|++||+ .|+.++..+|.++|.++++.|.+++++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus 67 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~i~~l~~~~~~ 143 (518)
T cd07125 67 DAEDVDAALAIAAAAFA---GWSATPVEERAEILEKAADLLEANRGELIALAAAEAGKTLADADAEVREAIDFCRYYAAQ 143 (518)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999 999999999999999999999999999999999999999999988999999999999998
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.+.
T Consensus 144 ~~~~~~~ 150 (518)
T cd07125 144 ARELFSD 150 (518)
T ss_pred HHHhcCC
Confidence 8876644
No 62
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=99.56 E-value=6.2e-14 Score=100.88 Aligned_cols=84 Identities=43% Similarity=0.696 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCc-cccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAFKRGSV-WRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFA 78 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~-w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a 78 (100)
+.+|++.++++|++||+ . |+++|..+|.++|.+++++|.+++++|+++++.|+|||..++.. |+..+++.+++++
T Consensus 35 ~~~~v~~av~~A~~A~~---~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a 111 (477)
T cd07113 35 TEADVDAAVASAWRAFV---SAWAKTTPAERGRILLRLADLIEQHGEELAQLETLCSGKSIHLSRAFEVGQSANFLRYFA 111 (477)
T ss_pred CHHHHHHHHHHHHHHhH---hhhccCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999998 6 99999999999999999999999999999999999999999986 9999999999999
Q ss_pred hchhhhcCc
Q psy13780 79 GWCDKIEGS 87 (100)
Q Consensus 79 ~~~~~~~~~ 87 (100)
..+..+.+.
T Consensus 112 ~~~~~~~~~ 120 (477)
T cd07113 112 GWATKINGE 120 (477)
T ss_pred HHHHHhcCc
Confidence 877665443
No 63
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=99.56 E-value=3.2e-14 Score=111.23 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+||+.||++|+.||+ .|+.+|+.+|+++|.+++++|++|+++|+.+++.|+|||+.++..||..++++|+||+..
T Consensus 680 ~~~dv~~Av~aA~~A~~---~W~~~p~~eRa~iL~r~Adlle~~~~eL~~l~~~EaGKt~~~A~~EV~eaidflryyA~~ 756 (1318)
T PRK11809 680 TPAEVEQALESAVNAAP---IWFATPPAERAAILERAADLMEAQMQTLMGLLVREAGKTFSNAIAEVREAVDFLRYYAGQ 756 (1318)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999998
Q ss_pred hhhh
Q psy13780 81 CDKI 84 (100)
Q Consensus 81 ~~~~ 84 (100)
+...
T Consensus 757 a~~~ 760 (1318)
T PRK11809 757 VRDD 760 (1318)
T ss_pred HHHh
Confidence 7653
No 64
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=99.56 E-value=6.5e-14 Score=100.51 Aligned_cols=84 Identities=37% Similarity=0.659 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHH-HhhHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS-IFDLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a-~~ev~~~~~~~~~~a~ 79 (100)
+.+|++.+++.|++||+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++ ..|+..+++.+++++.
T Consensus 33 ~~~~v~~av~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a~ 109 (467)
T TIGR01804 33 TREDVERAIAAARRAQG---EWASMTPEERGRILRRIAELIRERNEELAKLETLDTGKTLEETSVADMDDIADVFEFFAG 109 (467)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHH
Confidence 46799999999999999 9999999999999999999999999999999999999999999 4599999999999999
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+.+..+.
T Consensus 110 ~~~~~~~~ 117 (467)
T TIGR01804 110 LADKDGGE 117 (467)
T ss_pred HHHHhCCc
Confidence 88776544
No 65
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=99.56 E-value=6.9e-14 Score=99.93 Aligned_cols=84 Identities=24% Similarity=0.312 Sum_probs=78.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+|+.|++||+ .|+.+|..+|.++|.+++++|.++.++|+.+++.|+|||..++..|+..++..+++++..
T Consensus 16 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~ev~~~~~~~~~~~~~ 92 (452)
T cd07102 16 SLEAVRAALERARAAQK---GWRAVPLEERKAIVTRAVELLAANTDEIAEELTWQMGRPIAQAGGEIRGMLERARYMISI 92 (452)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999 999999999999999999999999999999999999999999988999999999999998
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.++
T Consensus 93 ~~~~~~~ 99 (452)
T cd07102 93 AEEALAD 99 (452)
T ss_pred HHHhcCC
Confidence 8876554
No 66
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=99.56 E-value=4.9e-14 Score=100.87 Aligned_cols=82 Identities=32% Similarity=0.605 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|++||+ .|+.+|+++|.++|.+++++|.+|+++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus 17 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 93 (456)
T cd07110 17 TAEDVDAAVRAARRAFP---RWKKTTGAERAKYLRAIAEGVRERREELAELEARDNGKPLDEAAWDVDDVAGCFEYYADL 93 (456)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhhhc
Q psy13780 81 CDKIE 85 (100)
Q Consensus 81 ~~~~~ 85 (100)
+.++.
T Consensus 94 ~~~~~ 98 (456)
T cd07110 94 AEQLD 98 (456)
T ss_pred HHHhh
Confidence 87764
No 67
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=99.56 E-value=3.6e-14 Score=105.53 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHH-hcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhch
Q psy13780 3 ADVDKAVESAKAA-FKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWC 81 (100)
Q Consensus 3 ~~v~~ai~~a~~a-~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~ 81 (100)
.||++||++|++| |+ .|+++|+.+|.++|.+++++|++|+++|+. ++.|+|||+.++..||..+++.++||+..+
T Consensus 36 ~dv~~Av~~A~~aa~~---~W~~~~~~eR~~~L~~~a~~l~~~~~ela~-~~~e~GK~~~~a~~ev~~~~~~~~~~a~~~ 111 (663)
T TIGR02278 36 LDVAAAVAWAREVGGP---ALRALTFHERARMLKALAQYLSERKEALYA-LAATTGATRRDNWVDIDGGIGTLFTYSSLG 111 (663)
T ss_pred HHHHHHHHHHHHhcch---hhhcCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 4899999999996 99 999999999999999999999999999999 589999999999999999999999999988
Q ss_pred hhh
Q psy13780 82 DKI 84 (100)
Q Consensus 82 ~~~ 84 (100)
.++
T Consensus 112 ~~~ 114 (663)
T TIGR02278 112 RRE 114 (663)
T ss_pred hhh
Confidence 763
No 68
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=99.55 E-value=8.9e-14 Score=100.18 Aligned_cols=83 Identities=31% Similarity=0.496 Sum_probs=77.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCc-cccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAFKRGSV-WRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFA 78 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~-w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a 78 (100)
+.+|++.++++|++||. . |+.+|..+|.++|++++++|.+|.++|+.+++.|+|||..++.. |+..++..+++++
T Consensus 34 ~~~~v~~av~~A~~A~~---~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~~ 110 (481)
T TIGR03216 34 GAAEVDAAVAAARAALK---GPWGKMTVAERADLLYAVADEIERRFDDFLAAEVADTGKPRSLASHLDIPRGAANFRVFA 110 (481)
T ss_pred CHHHHHHHHHHHHHHhH---hhHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHhHHHHHHHHHHHHHHH
Confidence 46799999999999999 8 99999999999999999999999999999999999999999875 9999999999999
Q ss_pred hchhhhcC
Q psy13780 79 GWCDKIEG 86 (100)
Q Consensus 79 ~~~~~~~~ 86 (100)
..+..+.+
T Consensus 111 ~~~~~~~~ 118 (481)
T TIGR03216 111 DVVKNAPT 118 (481)
T ss_pred HHHHHhcC
Confidence 98866543
No 69
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=99.55 E-value=9.3e-14 Score=99.29 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=78.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++++|++||+ .|+++|..+|.++|.+++++|.+++++|+++++.|+|||..++..|+..++..++|++..
T Consensus 16 ~~~~v~~av~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~ev~~~~~~l~~~~~~ 92 (453)
T cd07099 16 DPAEVAAAVARARAAQR---AWAALGVEGRAQRLLRWKRALADHADELAELLHAETGKPRADAGLEVLLALEAIDWAARN 92 (453)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999 999999999999999999999999999999999999999998888999999999999999
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.+.
T Consensus 93 ~~~~~~~ 99 (453)
T cd07099 93 APRVLAP 99 (453)
T ss_pred HHHhcCC
Confidence 8777543
No 70
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=99.55 E-value=7.4e-14 Score=99.96 Aligned_cols=84 Identities=36% Similarity=0.612 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCh-HHHHhhHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-EDSIFDLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~-~~a~~ev~~~~~~~~~~a~ 79 (100)
+.+|++.++++|+.||+ .|+.+|..+|.++|++++++|.+|+++|+++++.|+|||. .++..|+..+++.+++++.
T Consensus 17 ~~~~v~~av~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~a~~ev~~~~~~~~~~~~ 93 (457)
T cd07108 17 RAADVDRAVAAAKAAFP---EWAATPARERGKLLARIADALEARSEELARLLALETGNALRTQARPEAAVLADLFRYFGG 93 (457)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 9999999999999999999999999999999999999997 6887899999999999998
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
....+.+.
T Consensus 94 ~~~~~~~~ 101 (457)
T cd07108 94 LAGELKGE 101 (457)
T ss_pred HHHHhCCc
Confidence 77655443
No 71
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=99.55 E-value=9.7e-14 Score=99.82 Aligned_cols=84 Identities=37% Similarity=0.535 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|+.||+ .|+.+|..+|.++|.+++++|.+++++|+++++.|+|||..++..|+..++..+++++..
T Consensus 35 ~~~~v~~av~~a~~A~~---~w~~~~~~~R~~~l~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~ev~~~i~~~~~~~~~ 111 (478)
T cd07131 35 TASDVDAAVEAAREAFP---EWRKVPAPRRAEYLFRAAELLKKRKEELARLVTREMGKPLAEGRGDVQEAIDMAQYAAGE 111 (478)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999 999999999999999999999999999999999999999999988999999999999988
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+..+.+.
T Consensus 112 ~~~~~~~ 118 (478)
T cd07131 112 GRRLFGE 118 (478)
T ss_pred HHHhCCc
Confidence 7765543
No 72
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=99.54 E-value=5.2e-14 Score=100.13 Aligned_cols=79 Identities=32% Similarity=0.488 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhhh
Q psy13780 5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKI 84 (100)
Q Consensus 5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~ 84 (100)
|+.||+.|++||+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.++|++..+.++
T Consensus 1 v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~~~~~ 77 (429)
T cd07100 1 IEAALDRAHAAFL---AWRKTSFAERAALLRKLADLLRERKDELARLITLEMGKPIAEARAEVEKCAWICRYYAENAEAF 77 (429)
T ss_pred CHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999 9999999999999999999999999999999999999999999889999999999999998887
Q ss_pred cC
Q psy13780 85 EG 86 (100)
Q Consensus 85 ~~ 86 (100)
.+
T Consensus 78 ~~ 79 (429)
T cd07100 78 LA 79 (429)
T ss_pred cC
Confidence 54
No 73
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=99.54 E-value=6.6e-14 Score=99.63 Aligned_cols=80 Identities=29% Similarity=0.394 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhh
Q psy13780 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDK 83 (100)
Q Consensus 4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~ 83 (100)
|++.+|++|++||+ .|+.+|.++|.++|.+++++|.+|.++|+++++.|+|||..++..|+..+++.+++++..+..
T Consensus 1 ~v~~ai~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~ei~~~~~~l~~~~~~~~~ 77 (432)
T cd07105 1 DADQAVEAAAAAFP---AWSKTPPSERRDILLKAADLLESRRDEFIEAMMEETGATAAWAGFNVDLAAGMLREAASLITQ 77 (432)
T ss_pred CHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999 999999999999999999999999999999999999999888888999999999999998876
Q ss_pred hcC
Q psy13780 84 IEG 86 (100)
Q Consensus 84 ~~~ 86 (100)
+.+
T Consensus 78 ~~~ 80 (432)
T cd07105 78 IIG 80 (432)
T ss_pred hcC
Confidence 533
No 74
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=99.54 E-value=1.2e-13 Score=99.52 Aligned_cols=86 Identities=35% Similarity=0.661 Sum_probs=78.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|++||+.+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus 33 ~~~~v~~av~~A~~a~~~~-~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 111 (482)
T cd07119 33 TAEDAKRAIAAARRAFDSG-EWPHLPAQERAALLFRIADKIREDAEELARLETLNTGKTLRESEIDIDDVANCFRYYAGL 111 (482)
T ss_pred CHHHHHHHHHHHHHHcCCC-chhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999611 599999999999999999999999999999999999999999998999999999999998
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.+..+.
T Consensus 112 ~~~~~~~ 118 (482)
T cd07119 112 ATKETGE 118 (482)
T ss_pred HHHhcCc
Confidence 8765544
No 75
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=99.54 E-value=9.4e-14 Score=100.17 Aligned_cols=81 Identities=40% Similarity=0.673 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++++|++||+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus 36 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~iL~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 112 (488)
T TIGR02299 36 GAADVDRAAKAAKEAFK---RWAELKAAERKRYLHKIADLIEQHADEIAVLECLDCGQPLRQTRQQVIRAAENFRFFADK 112 (488)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999 999999999999999999999999999999999999999999988999999999999998
Q ss_pred hhhh
Q psy13780 81 CDKI 84 (100)
Q Consensus 81 ~~~~ 84 (100)
+.++
T Consensus 113 ~~~~ 116 (488)
T TIGR02299 113 CEEA 116 (488)
T ss_pred HHHh
Confidence 8743
No 76
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=99.54 E-value=5.6e-14 Score=100.59 Aligned_cols=78 Identities=22% Similarity=0.179 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhchhhhc
Q psy13780 7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGWCDKIE 85 (100)
Q Consensus 7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~ 85 (100)
+.|++|+.||+ .|+.+|+.+|.++|.+++++|++|+++|+++++.|+|||+.++.. ||..++..++|++..+..+.
T Consensus 2 ~~v~~a~~a~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~~~~~~~ 78 (449)
T cd07136 2 SLVEKQRAFFK---TGATKDVEFRIEQLKKLKQAIKKYENEILEALKKDLGKSEFEAYMTEIGFVLSEINYAIKHLKKWM 78 (449)
T ss_pred hHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999 999999999999999999999999999999999999999999975 99999999999999887775
Q ss_pred Cc
Q psy13780 86 GS 87 (100)
Q Consensus 86 ~~ 87 (100)
+.
T Consensus 79 ~~ 80 (449)
T cd07136 79 KP 80 (449)
T ss_pred CC
Confidence 43
No 77
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=99.54 E-value=9e-14 Score=100.24 Aligned_cols=84 Identities=23% Similarity=0.346 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++++|++||+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus 33 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~ 109 (484)
T TIGR03240 33 SAAQVEAAVAAARAAFP---AWARLSLEERIAVVQRFAALLEERKEALARVIARETGKPLWETRTEVASMIGKVAISIKA 109 (484)
T ss_pred CHHHHHHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999998887
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+..+.+.
T Consensus 110 ~~~~~g~ 116 (484)
T TIGR03240 110 YHERTGE 116 (484)
T ss_pred HHHhcCc
Confidence 7665443
No 78
>cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11. NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.
Probab=99.54 E-value=1e-13 Score=99.62 Aligned_cols=85 Identities=21% Similarity=0.277 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccC-CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNL-DASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~-~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~ 79 (100)
+.+||+.++++|++||+ .|+.+ |..+|.++|.+++++|.+++++|+++++.|+|||..++..|+..++..+++++.
T Consensus 36 ~~~~v~~av~~A~~A~~---~w~~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~ 112 (473)
T cd07082 36 SALEILEAAETAYDAGR---GWWPTMPLEERIDCLHKFADLLKENKEEVANLLMWEIGKTLKDALKEVDRTIDYIRDTIE 112 (473)
T ss_pred CHHHHHHHHHHHHHHHH---HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999 99988 999999999999999999999999999999999999998899999999999999
Q ss_pred chhhhcCcc
Q psy13780 80 WCDKIEGST 88 (100)
Q Consensus 80 ~~~~~~~~~ 88 (100)
.+.++.+..
T Consensus 113 ~~~~~~g~~ 121 (473)
T cd07082 113 ELKRLDGDS 121 (473)
T ss_pred HHHHhcCCc
Confidence 887775543
No 79
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=99.53 E-value=1.2e-13 Score=98.80 Aligned_cols=85 Identities=41% Similarity=0.669 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccc-cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWR-NLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~-~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~ 79 (100)
+.+|++.+++.|+.||+ .|. .+|.++|.++|.+++++|.+|+++|+.+++.|+|||..++..|+..++..++|++.
T Consensus 17 ~~~dv~~av~~a~~A~~---~~~~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~ 93 (454)
T cd07109 17 GAADVDRAVQAARRAFE---SGWLRLSPAERGRLLLRIARLIREHADELARLESLDTGKPLTQARADVEAAARYFEYYGG 93 (454)
T ss_pred CHHHHHHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 876 99999999999999999999999999999999999999998899999999999999
Q ss_pred chhhhcCcc
Q psy13780 80 WCDKIEGST 88 (100)
Q Consensus 80 ~~~~~~~~~ 88 (100)
...++.+..
T Consensus 94 ~~~~~~g~~ 102 (454)
T cd07109 94 AADKLHGET 102 (454)
T ss_pred HHHHhcCcc
Confidence 887766543
No 80
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=99.53 E-value=1e-13 Score=99.45 Aligned_cols=83 Identities=30% Similarity=0.386 Sum_probs=77.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.+++.|++||+ .|+++|..+|.++|.+++++|.+|+++|+++++.|+|||..++.. |+...++.+++++.
T Consensus 34 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~~~ 110 (466)
T cd07138 34 TAADVDRAVAAARRAFP---AWSATSVEERAALLERIAEAYEARADELAQAITLEMGAPITLARAAQVGLGIGHLRAAAD 110 (466)
T ss_pred CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999998865 99999999999999
Q ss_pred chhhhcC
Q psy13780 80 WCDKIEG 86 (100)
Q Consensus 80 ~~~~~~~ 86 (100)
.+.++..
T Consensus 111 ~~~~~~~ 117 (466)
T cd07138 111 ALKDFEF 117 (466)
T ss_pred hhhhccc
Confidence 8876643
No 81
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=99.53 E-value=1.9e-13 Score=98.21 Aligned_cols=85 Identities=32% Similarity=0.445 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.|+++|++||+.+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++.. |+..+++.+++++.
T Consensus 34 ~~~~v~~av~~a~~a~~~~-~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~~~ 112 (471)
T cd07139 34 TPADVDAAVAAARRAFDNG-PWPRLSPAERAAVLRRLADALEARADELARLWTAENGMPISWSRRAQGPGPAALLRYYAA 112 (471)
T ss_pred CHHHHHHHHHHHHHHcCCC-chhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999811 299999999999999999999999999999999999999988765 99999999999999
Q ss_pred chhhhcC
Q psy13780 80 WCDKIEG 86 (100)
Q Consensus 80 ~~~~~~~ 86 (100)
.+.++.+
T Consensus 113 ~~~~~~~ 119 (471)
T cd07139 113 LARDFPF 119 (471)
T ss_pred HHHHhcC
Confidence 8877653
No 82
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=99.53 E-value=1.6e-13 Score=98.87 Aligned_cols=85 Identities=51% Similarity=0.888 Sum_probs=76.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCccc-cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWR-NLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFA 78 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~-~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a 78 (100)
+.+|++.||++|++||.. .|+ .+|..+|.++|.++++.|.+|+++|+.+++.|+|||..++.. |+..++..+++++
T Consensus 42 ~~~~v~~av~~a~~a~~~--~W~~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~a 119 (481)
T cd07143 42 TEADVDIAVEVAHAAFET--DWGLKVSGSKRGRCLSKLADLMERNLDYLASIEALDNGKTFGTAKRVDVQASADTFRYYG 119 (481)
T ss_pred CHHHHHHHHHHHHHhhhh--hhcccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999971 399 999999999999999999999999999999999999976544 9999999999999
Q ss_pred hchhhhcCc
Q psy13780 79 GWCDKIEGS 87 (100)
Q Consensus 79 ~~~~~~~~~ 87 (100)
..+....+.
T Consensus 120 ~~a~~~~g~ 128 (481)
T cd07143 120 GWADKIHGQ 128 (481)
T ss_pred HHHHHhcCc
Confidence 988765443
No 83
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=99.53 E-value=1.6e-13 Score=98.64 Aligned_cols=84 Identities=38% Similarity=0.616 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.+++.|+.+|+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++.. |+..+++.+++++.
T Consensus 37 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~ 113 (475)
T PRK13473 37 SAAQVDAAVAAADAAFP---EWSQTTPKERAEALLKLADAIEENADEFARLESLNCGKPLHLALNDEIPAIVDVFRFFAG 113 (475)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999 999999999999999999999999999999999999999998865 99999999999998
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+..+.+.
T Consensus 114 ~~~~~~g~ 121 (475)
T PRK13473 114 AARCLEGK 121 (475)
T ss_pred HHHHhcCc
Confidence 77666543
No 84
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=99.53 E-value=1.6e-13 Score=98.38 Aligned_cols=86 Identities=45% Similarity=0.731 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.+|+.|+.||+.+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++.. |+..++..++|++.
T Consensus 22 ~~~~v~~av~~a~~A~~~~-~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~ 100 (462)
T cd07112 22 DAADVDRAVAAARRAFESG-VWSRLSPAERKAVLLRLADLIEAHRDELALLETLDMGKPISDALAVDVPSAANTFRWYAE 100 (462)
T ss_pred CHHHHHHHHHHHHHhcCCC-ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999710 499999999999999999999999999999999999999999876 99999999999999
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+.++.+.
T Consensus 101 ~~~~~~~~ 108 (462)
T cd07112 101 AIDKVYGE 108 (462)
T ss_pred HHHHhcCc
Confidence 98877654
No 85
>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences.
Probab=99.53 E-value=1.3e-13 Score=99.50 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCcc--ccCCHHHH----HHHHHHHHHHHHHh--HHHHHHHHHHHcCCChHHHHhhHHHHHH
Q psy13780 1 MSADVDKAVESAKAAFKRGSVW--RNLDASGR----GKLIYKLAELIDKN--VDYLASLETLDNGKPYEDSIFDLGCASD 72 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w--~~~~~~~R----~~~L~~~~~~l~~~--~~~l~~~~~~e~Gk~~~~a~~ev~~~~~ 72 (100)
+.+||+.||++|++||+ .| ..++..+| .++|.++++.|.++ .++|+++++.|+|||+.++..||..+++
T Consensus 32 ~~~dv~~Av~aA~~A~~---~W~~~~~~~~~R~l~~~~il~~~a~~l~~~~~~~~la~~~~~e~GK~~~~a~~Ev~~~~~ 108 (489)
T cd07126 32 DEDEINEFVDSLRQCPK---SGLHNPLKNPERYLLYGDVSHRVAHELRKPEVEDFFARLIQRVAPKSDAQALGEVVVTRK 108 (489)
T ss_pred CHHHHHHHHHHHHHHHH---hccccCCCHHHHhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46899999999999999 88 56789999 89999999999999 5999999999999999999889999999
Q ss_pred HHHHHHhchhhhcCc
Q psy13780 73 TFRYFAGWCDKIEGS 87 (100)
Q Consensus 73 ~~~~~a~~~~~~~~~ 87 (100)
.++||+....++.+.
T Consensus 109 ~~~~~a~~~~~~~g~ 123 (489)
T cd07126 109 FLENFAGDQVRFLAR 123 (489)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999887766543
No 86
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=99.52 E-value=1.9e-13 Score=97.61 Aligned_cols=84 Identities=35% Similarity=0.550 Sum_probs=78.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|+.||+ .|+.+|..+|.++|.++++.|.++.++|+.+++.|+|||..++..|+..++..++|++..
T Consensus 17 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~ 93 (451)
T cd07103 17 GAADADAAIDAAAAAFK---TWRKTTARERAAILRRWADLIRERAEDLARLLTLEQGKPLAEARGEVDYAASFLEWFAEE 93 (451)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+..+.+.
T Consensus 94 ~~~~~~~ 100 (451)
T cd07103 94 ARRIYGR 100 (451)
T ss_pred HHHhcCc
Confidence 7665543
No 87
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=99.52 E-value=1.7e-13 Score=97.86 Aligned_cols=84 Identities=27% Similarity=0.406 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.++++.+++.|++||. .|+.+|..+|.++|.+++++|.++.++|+.+++.|+|||..++..|+..++..+++++..
T Consensus 19 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~ 95 (453)
T cd07149 19 SEEDVEKAIAAAKEGAK---EMKSLPAYERAEILERAAQLLEERREEFARTIALEAGKPIKDARKEVDRAIETLRLSAEE 95 (453)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999 999999999999999999999999999999999999999999988999999999999988
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+..+.+.
T Consensus 96 ~~~~~~~ 102 (453)
T cd07149 96 AKRLAGE 102 (453)
T ss_pred HHHhcCc
Confidence 7666443
No 88
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=99.52 E-value=2.7e-13 Score=97.30 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=76.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.+++.|++||+ .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||+.++.. |+..+++.+++++.
T Consensus 16 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~e~~~~~~~~~~~~~ 92 (465)
T cd07098 16 TPEDVDEAIAAARAAQR---EWAKTSFAERRKVLRSLLKYILENQEEICRVACRDTGKTMVDASLGEILVTCEKIRWTLK 92 (465)
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999865 99999999999998
Q ss_pred chhhhc
Q psy13780 80 WCDKIE 85 (100)
Q Consensus 80 ~~~~~~ 85 (100)
.+..+.
T Consensus 93 ~~~~~~ 98 (465)
T cd07098 93 HGEKAL 98 (465)
T ss_pred HHHHHh
Confidence 876643
No 89
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.
Probab=99.51 E-value=1.5e-13 Score=98.09 Aligned_cols=78 Identities=36% Similarity=0.528 Sum_probs=74.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|+.||+ .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||..++..|+..++..+++++..
T Consensus 17 ~~~~v~~av~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~ 93 (446)
T cd07106 17 SEAQLDQAVAAAKAAFP---GWSATPLEERRAALLAIADAIEANAEELARLLTLEQGKPLAEAQFEVGGAVAWLRYTASL 93 (446)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999887
Q ss_pred h
Q psy13780 81 C 81 (100)
Q Consensus 81 ~ 81 (100)
.
T Consensus 94 ~ 94 (446)
T cd07106 94 D 94 (446)
T ss_pred h
Confidence 5
No 90
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=99.51 E-value=2e-13 Score=97.70 Aligned_cols=84 Identities=52% Similarity=0.895 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.++++.+++.|+.||+ .|+.+|.++|.++|.+++++|.+|+++|+.+++.|+|||..++.. |+..+++.+++++.
T Consensus 17 ~~~~v~~av~~a~~A~~---~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~i~~l~~~~~ 93 (453)
T cd07115 17 SAEDVDAAVAAARAAFE---AWSAMDPAERGRILWRLAELILANADELARLESLDTGKPIRAARRLDVPRAADTFRYYAG 93 (453)
T ss_pred CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999 999999999999999999999999999999999999999999975 99999999999998
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
......+.
T Consensus 94 ~~~~~~g~ 101 (453)
T cd07115 94 WADKIEGE 101 (453)
T ss_pred HHHHhcCc
Confidence 77665443
No 91
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=99.51 E-value=2.5e-13 Score=97.05 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhchhhhc
Q psy13780 7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGWCDKIE 85 (100)
Q Consensus 7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~ 85 (100)
.|+++|++||+ .|+.+|+.+|.++|.++++.|++|+++|+++++.|+|||..++.. |+..+++.+++++..+.++.
T Consensus 2 ~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~~~~~~~ 78 (443)
T cd07132 2 EAVRRAREAFS---SGKTRPLEFRIQQLEALLRMLEENEDEIVEALAKDLRKPKFEAVLSEILLVKNEIKYAISNLPEWM 78 (443)
T ss_pred hHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999 999999999999999999999999999999999999999999975 99999999999999888775
Q ss_pred C
Q psy13780 86 G 86 (100)
Q Consensus 86 ~ 86 (100)
+
T Consensus 79 ~ 79 (443)
T cd07132 79 K 79 (443)
T ss_pred C
Confidence 4
No 92
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=99.51 E-value=1.9e-13 Score=97.10 Aligned_cols=80 Identities=30% Similarity=0.444 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhh
Q psy13780 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDK 83 (100)
Q Consensus 4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~ 83 (100)
|++++|+.|+.||+ .|+.+|..+|.++|.+++++|.+++++|+++++.|+|||..++..|+..+++.+++++..+.+
T Consensus 1 ~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~ei~~~~~~l~~~~~~~~~ 77 (431)
T cd07104 1 DVDRAYAAAAAAQK---AWAATPPQERAAILRKAAEILEERRDEIADWLIRESGSTRPKAAFEVGAAIAILREAAGLPRR 77 (431)
T ss_pred CHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999 999999999999999999999999999999999999999999988999999999999988765
Q ss_pred hcC
Q psy13780 84 IEG 86 (100)
Q Consensus 84 ~~~ 86 (100)
..+
T Consensus 78 ~~~ 80 (431)
T cd07104 78 PEG 80 (431)
T ss_pred hcC
Confidence 544
No 93
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=99.51 E-value=1.7e-13 Score=102.17 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHH-hcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhch
Q psy13780 3 ADVDKAVESAKAA-FKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWC 81 (100)
Q Consensus 3 ~~v~~ai~~a~~a-~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~ 81 (100)
+|++.||++|+.| |+ .|+++|+.+|+++|.+++++|++|.++|+. ++.|+|||+.++..|+..++..++||+..+
T Consensus 40 ~dv~~Av~~A~~A~~~---~W~~~~~~eR~~~L~~~a~~l~~~~~ela~-l~~e~GK~~~~a~~ev~~~~~~~~~~a~~~ 115 (675)
T PRK11563 40 LDFAAALAYAREVGGP---ALRALTFHERAAMLKALAKYLLERKEELYA-LSAQTGATRRDSWIDIEGGIGTLFTYASKG 115 (675)
T ss_pred HHHHHHHHHHHHhhhh---hhhcCCHHHHHHHHHHHHHHHHHhHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999998 78 999999999999999999999999999998 589999999999999999999999999987
Q ss_pred hhh
Q psy13780 82 DKI 84 (100)
Q Consensus 82 ~~~ 84 (100)
.+.
T Consensus 116 ~~~ 118 (675)
T PRK11563 116 RRE 118 (675)
T ss_pred hhh
Confidence 654
No 94
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=99.50 E-value=2e-13 Score=106.55 Aligned_cols=83 Identities=27% Similarity=0.475 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.++|+.||+.|+.||+ .|+.+|..+|.++|.+++++|++++++|+.+++.|+|||+.++..||..++++++||+..
T Consensus 588 ~~~~v~~Av~aA~~A~~---~W~~~~~~~Ra~iL~raAdll~~~~~eL~~l~~~E~GKt~~ea~~Ev~eaid~lr~ya~~ 664 (1208)
T PRK11905 588 SAEDVERALAAAQAAFP---EWSATPAAERAAILERAADLMEAHMPELFALAVREAGKTLANAIAEVREAVDFLRYYAAQ 664 (1208)
T ss_pred CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999998
Q ss_pred hhhhcC
Q psy13780 81 CDKIEG 86 (100)
Q Consensus 81 ~~~~~~ 86 (100)
+..+.+
T Consensus 665 a~~~~~ 670 (1208)
T PRK11905 665 ARRLLN 670 (1208)
T ss_pred HHHhcC
Confidence 877643
No 95
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=99.50 E-value=4.3e-13 Score=96.03 Aligned_cols=85 Identities=48% Similarity=0.792 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.+++.|+.||..+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus 17 ~~~~v~~av~~a~~a~~~~-~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~ev~~~~~~~~~~a~~ 95 (457)
T cd07114 17 SAADVDRAVAAARAAFEGG-AWRKLTPTERGKLLRRLADLIEANAEELAELETRDNGKLIRETRAQVRYLAEWYRYYAGL 95 (457)
T ss_pred CHHHHHHHHHHHHHHcCCC-chhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999610 499999999999999999999999999999999999999999988999999999999887
Q ss_pred hhhhcC
Q psy13780 81 CDKIEG 86 (100)
Q Consensus 81 ~~~~~~ 86 (100)
...+.+
T Consensus 96 ~~~~~~ 101 (457)
T cd07114 96 ADKIEG 101 (457)
T ss_pred HHHhcC
Confidence 665543
No 96
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=99.49 E-value=2.7e-13 Score=96.66 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhchhhh
Q psy13780 6 DKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGWCDKI 84 (100)
Q Consensus 6 ~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~ 84 (100)
..+++.|+.||. .|+.+|..+|.++|++++++|++++++|+.+++.|+|||+.++.. |+..+++.++|++..+..+
T Consensus 2 ~~a~~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~~~~~~ 78 (432)
T cd07137 2 PRLVRELRETFR---SGRTRSAEWRKSQLKGLLRLVDENEDDIFAALRQDLGKPSAESFRDEVSVLVSSCKLAIKELKKW 78 (432)
T ss_pred hHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999 999999999999999999999999999999999999999999875 9999999999999988765
Q ss_pred cC
Q psy13780 85 EG 86 (100)
Q Consensus 85 ~~ 86 (100)
.+
T Consensus 79 ~~ 80 (432)
T cd07137 79 MA 80 (432)
T ss_pred hC
Confidence 54
No 97
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=99.49 E-value=3.2e-13 Score=96.05 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhchhhhc
Q psy13780 7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGWCDKIE 85 (100)
Q Consensus 7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~ 85 (100)
++|++|+.||. .|+.+|+.+|.++|.+++++|++++++|+++++.|+|||..++.. |+..++..+++++..+..+.
T Consensus 2 ~~v~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~~~~~Ev~~~~~~~~~~~~~~~~~~ 78 (426)
T cd07087 2 ELVARLRETFL---TGKTRSLEWRKAQLKALKRMLTENEEEIAAALYADLGKPPAEAYLTEIAVVLGEIDHALKHLKKWM 78 (426)
T ss_pred hHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999 999999999999999999999999999999999999999887765 99999999999998877664
Q ss_pred C
Q psy13780 86 G 86 (100)
Q Consensus 86 ~ 86 (100)
+
T Consensus 79 ~ 79 (426)
T cd07087 79 K 79 (426)
T ss_pred C
Confidence 3
No 98
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=99.48 E-value=7.2e-13 Score=94.68 Aligned_cols=83 Identities=43% Similarity=0.647 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.+++.|+.||+ .|+.+|..+|.++|.+++++|.+++++|+++++.|+|||..++.. |+..+++.+++++.
T Consensus 17 ~~~~v~~av~~a~~a~~---~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~~~~~ev~~~i~~~~~~~~ 93 (450)
T cd07092 17 SAADVDAAVAAAHAAFP---SWRRTTPAERSKALLKLADAIEENAEELAALESRNTGKPLHLVRDDELPGAVDNFRFFAG 93 (450)
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999 999999999999999999999999999999999999999987654 99999999999998
Q ss_pred chhhhcC
Q psy13780 80 WCDKIEG 86 (100)
Q Consensus 80 ~~~~~~~ 86 (100)
.+..+.+
T Consensus 94 ~~~~~~~ 100 (450)
T cd07092 94 AARTLEG 100 (450)
T ss_pred HHHHhcC
Confidence 7765543
No 99
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=99.48 E-value=5.8e-13 Score=96.05 Aligned_cols=81 Identities=37% Similarity=0.620 Sum_probs=74.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.+++.|+++|+ .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||+.++.. |+...+..+.+++.
T Consensus 57 ~~~~v~~ai~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~ 133 (480)
T cd07111 57 EEEDVDAAVAAARTAFE---SWSALPGHVRARHLYRIARHIQKHQRLFAVLESLDNGKPIRESRDCDIPLVARHFYHHAG 133 (480)
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999 999999999999999999999999999999999999999999975 99999999998887
Q ss_pred chhhh
Q psy13780 80 WCDKI 84 (100)
Q Consensus 80 ~~~~~ 84 (100)
.....
T Consensus 134 ~~~~~ 138 (480)
T cd07111 134 WAQLL 138 (480)
T ss_pred HHHHh
Confidence 76544
No 100
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=99.47 E-value=7.6e-13 Score=95.42 Aligned_cols=84 Identities=48% Similarity=0.849 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCc-cccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHH-HhhHHHHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAFKRGSV-WRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS-IFDLGCASDTFRYFA 78 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~-w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a-~~ev~~~~~~~~~~a 78 (100)
+.+|++.++++|++||+ . |+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++ ..|+..++..+++++
T Consensus 43 ~~~~v~~ai~~A~~A~~---~~w~~~~~~~R~~iL~~~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~~ev~~~~~~l~~~~ 119 (484)
T cd07144 43 GEEDVDKAVKAARKAFE---SWWSKVTGEERGELLDKLADLVEKNRDLLAAIEALDSGKPYHSNALGDLDEIIAVIRYYA 119 (484)
T ss_pred CHHHHHHHHHHHHHHHH---hhHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999998 6 889999999999999999999999999999999999999876 459999999999999
Q ss_pred hchhhhcCc
Q psy13780 79 GWCDKIEGS 87 (100)
Q Consensus 79 ~~~~~~~~~ 87 (100)
..+.++.+.
T Consensus 120 ~~~~~~~g~ 128 (484)
T cd07144 120 GWADKIQGK 128 (484)
T ss_pred HHHHHhcCc
Confidence 988777554
No 101
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=99.47 E-value=7.4e-13 Score=94.72 Aligned_cols=82 Identities=38% Similarity=0.619 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++++++.|+.||. .|+.+|.++|.++|.+++++|.+++++|+.+++.|+|||..++.. |+..++..+++++.
T Consensus 17 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~i~~~~~~~~ 93 (455)
T cd07093 17 GAAEVDAAVAAAKEAFP---GWSRMSPAERARILHKVADLIEARADELALLESLDTGKPITLARTRDIPRAAANFRFFAD 93 (455)
T ss_pred CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999988866 99999999999999
Q ss_pred chhhhc
Q psy13780 80 WCDKIE 85 (100)
Q Consensus 80 ~~~~~~ 85 (100)
.+.+..
T Consensus 94 ~~~~~~ 99 (455)
T cd07093 94 YILQLD 99 (455)
T ss_pred hHHHhC
Confidence 876643
No 102
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=99.47 E-value=9.8e-13 Score=94.82 Aligned_cols=87 Identities=61% Similarity=0.989 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.++++.+++.|++||+.++.|+.+|..+|.++|.+++++|.++.++|+.+++.|+|||..++.. |+..++..+++++.
T Consensus 42 ~~~~v~~av~~A~~A~~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~~~~l~~~a~ 121 (481)
T cd07141 42 DKADVDKAVKAARAAFKLGSPWRTMDASERGRLLNKLADLIERDRAYLASLETLDNGKPFSKSYLVDLPGAIKVLRYYAG 121 (481)
T ss_pred CHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999997211599999999999999999999999999999999999999977654 99999999999999
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+.++.+.
T Consensus 122 ~~~~~~g~ 129 (481)
T cd07141 122 WADKIHGK 129 (481)
T ss_pred HHHHhcCc
Confidence 88777654
No 103
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=99.46 E-value=1.3e-12 Score=93.99 Aligned_cols=84 Identities=50% Similarity=0.836 Sum_probs=75.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCcc--ccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAFKRGSVW--RNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYF 77 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w--~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~ 77 (100)
+.+|++.+++.|++||+ .| +.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++.. |+..++..++++
T Consensus 39 ~~~~v~~av~~A~~A~~---~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~ 115 (476)
T cd07091 39 DEEDVDAAVKAARAAFE---TGWWRKMDPRERGRLLNKLADLIERDRDELAALESLDNGKPLEESAKGDVALSIKCLRYY 115 (476)
T ss_pred CHHHHHHHHHHHHHhcc---cCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999 75 4999999999999999999999999999999999999976654 999999999999
Q ss_pred HhchhhhcCc
Q psy13780 78 AGWCDKIEGS 87 (100)
Q Consensus 78 a~~~~~~~~~ 87 (100)
+..+.+..+.
T Consensus 116 a~~~~~~~~~ 125 (476)
T cd07091 116 AGWADKIQGK 125 (476)
T ss_pred HHHHHHhcCc
Confidence 9887665544
No 104
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=99.45 E-value=6.3e-13 Score=95.28 Aligned_cols=76 Identities=28% Similarity=0.381 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhh
Q psy13780 5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDK 83 (100)
Q Consensus 5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~ 83 (100)
|++|++.|+.||+ .|+.+|..+|.++|.+++++|++++++|+.+++.|+|||..++..|+..++..+++++..+..
T Consensus 1 v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gkp~~~~~~ev~~~~~~l~~~a~~~~~ 76 (454)
T cd07129 1 VDAAAAAAAAAFE---SYRALSPARRAAFLEAIADEIEALGDELVARAHAETGLPEARLQGELGRTTGQLRLFADLVRE 76 (454)
T ss_pred ChHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999 999999999999999999999999999999999999999998888999999999999987754
No 105
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=99.43 E-value=2.5e-12 Score=92.57 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=73.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|+++|++.|+++|+ .+++.+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus 37 ~~~~v~~av~~A~~a~~------~~~~~~R~~~l~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 110 (472)
T TIGR03250 37 SVDDVRRAFAIAAAYRP------TLTRYERSAILDRAAALLAARKEEISDLITLESGLSKKDSLYEVGRVADVLTFAAAE 110 (472)
T ss_pred CHHHHHHHHHHHHHHHh------hCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999988775 579999999999999999999999999999999999999988999999999999998
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++.+.
T Consensus 111 ~~~~~~~ 117 (472)
T TIGR03250 111 ALRDDGQ 117 (472)
T ss_pred HHHhcCc
Confidence 8766543
No 106
>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like. ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.
Probab=99.43 E-value=6.2e-13 Score=95.03 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhh
Q psy13780 6 DKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDK 83 (100)
Q Consensus 6 ~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~ 83 (100)
+.||+.|+.||+ .|+++|+.+|.++|.+++++|++|+++|+.+++.|+|||. ++..|+..++..++||+..+..
T Consensus 2 ~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-~~~~ev~~~i~~~~~~~~~~~~ 75 (442)
T cd07084 2 ERALLAADISTK---AARRLALPKRADFLARIIQRLAAKSYDIAAGAVLVTGKGW-MFAENICGDQVQLRARAFVIYS 75 (442)
T ss_pred hHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCch-hhhhhhcchHHHHHHHHHHHHh
Confidence 579999999999 9999999999999999999999999999999999999999 6666999999999999888754
No 107
>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.
Probab=99.43 E-value=1.7e-12 Score=92.63 Aligned_cols=76 Identities=13% Similarity=0.029 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhchhhhc
Q psy13780 7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGWCDKIE 85 (100)
Q Consensus 7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~ 85 (100)
.++++|+.||+ .|+.+|..+|.++|.+++++|++++++|+++++.|+|||+.++.. |+..++..+++++..+..+.
T Consensus 2 ~~~~~a~~a~~---~W~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~~~~~~~~~ 78 (433)
T cd07134 2 RVFAAQQAHAL---ALRASTAAERIAKLKRLKKAILARREEIIAALAADFRKPAAEVDLTEILPVLSEINHAIKHLKKWM 78 (433)
T ss_pred hHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999 999999999999999999999999999999999999999999974 99999999999998766543
No 108
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=99.42 E-value=8.7e-13 Score=94.18 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHH-HHHHHHh
Q psy13780 5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASD-TFRYFAG 79 (100)
Q Consensus 5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~-~~~~~a~ 79 (100)
|+.|+++|+.||. .|+++|..+|.++|.+++++|++++++|+.+++.|+|||+.++.. ++...+. .+++++.
T Consensus 1 ~~~av~~A~~A~~---~W~~~~~~eR~~~L~~~a~~l~~~~eela~~~~~E~Gk~~~ea~~~e~~~~~~~~~~~~~~ 74 (436)
T cd07122 1 VDELVERARKAQR---EFATFSQEQVDKIVEAVAWAAADAAEELAKMAVEETGMGVVEDKVIKNHFASEYVYNDIKD 74 (436)
T ss_pred ChHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999 999999999999999999999999999999999999999999886 7887777 7888886
No 109
>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like. Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.
Probab=99.41 E-value=2.9e-12 Score=91.76 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.++++.|+++|++ .|+.+|..+|.++|.++++.|.+++++|+++++.|+|||..++..|+..+++.++|++..
T Consensus 19 ~~~~v~~av~~A~~------~~~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~ 92 (451)
T cd07146 19 TEEALREALALAAS------YRSTLTRYQRSAILNKAAALLEARREEFARLITLESGLCLKDTRYEVGRAADVLRFAAAE 92 (451)
T ss_pred CHHHHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999988764 477799999999999999999999999999999999999999988999999999999988
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+..+.++
T Consensus 93 ~~~~~~~ 99 (451)
T cd07146 93 ALRDDGE 99 (451)
T ss_pred HHHhcCc
Confidence 7766443
No 110
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=99.39 E-value=6e-12 Score=89.81 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC-hHHHHh-hHHHHHHHHHHHHhchhhh
Q psy13780 7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP-YEDSIF-DLGCASDTFRYFAGWCDKI 84 (100)
Q Consensus 7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~-~~~a~~-ev~~~~~~~~~~a~~~~~~ 84 (100)
..+++|+.||+ .|+.+|+.+|.++|++++++|++|+++|+++++.|+||+ ..++.. |+...+..++|++..+.++
T Consensus 2 ~~~~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~ea~~~ev~~~i~~~~~~~~~~~~~ 78 (434)
T cd07133 2 ALLERQKAAFL---ANPPPSLEERRDRLDRLKALLLDNQDALAEAISADFGHRSRHETLLAEILPSIAGIKHARKHLKKW 78 (434)
T ss_pred hHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999 999999999999999999999999999999999999985 567754 9999999999999988776
Q ss_pred cCc
Q psy13780 85 EGS 87 (100)
Q Consensus 85 ~~~ 87 (100)
.++
T Consensus 79 ~~~ 81 (434)
T cd07133 79 MKP 81 (434)
T ss_pred hCC
Confidence 543
No 111
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=99.39 E-value=2.1e-12 Score=92.29 Aligned_cols=65 Identities=18% Similarity=0.048 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHH
Q psy13780 5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASD 72 (100)
Q Consensus 5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~ 72 (100)
++.|+++|++||+ .|+.+|+.+|.++|.+++++|++|+++|+.+++.|+|||+.++..++...+.
T Consensus 1 ~~~Ai~~A~~A~~---~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~E~Gk~~~ea~~~~~~~~~ 65 (439)
T cd07081 1 LDDAVAAAKVAQQ---GLSCKSQEMVDLIFRAAAEAAEDARIDLAKLAVSETGMGRVEDKVIKNHFAA 65 (439)
T ss_pred CHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 4789999999999 9999999999999999999999999999999999999999998765544443
No 112
>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like. Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes.
Probab=99.39 E-value=4.4e-12 Score=92.73 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-----hHHHHHHHHHHHH
Q psy13780 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-----DLGCASDTFRYFA 78 (100)
Q Consensus 4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-----ev~~~~~~~~~~a 78 (100)
|++.+|++|++||+ .|+++|+.+|..+|.+++++|.+++++|+.+++.|+|||..++.. |+..++..++|++
T Consensus 85 dv~~ai~aA~~A~~---~W~~~~~~~R~~il~~~a~~l~~~~~ela~a~~~e~Gk~~~~a~qa~~~~evd~a~e~~~~a~ 161 (549)
T cd07127 85 DPDALLAAARAAMP---GWRDAGARARAGVCLEILQRLNARSFEMAHAVMHTTGQAFMMAFQAGGPHAQDRGLEAVAYAW 161 (549)
T ss_pred HHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHCCCHHHHHhcccHHHHHHHHHHHHHHH
Confidence 89999999999999 999999999999999999999999999999999999999987752 7999999999999
Q ss_pred hchhhhcC
Q psy13780 79 GWCDKIEG 86 (100)
Q Consensus 79 ~~~~~~~~ 86 (100)
.....+.+
T Consensus 162 ~~~~~~~~ 169 (549)
T cd07127 162 REMSRIPP 169 (549)
T ss_pred HHHHhccc
Confidence 88766543
No 113
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.
Probab=99.35 E-value=7.9e-12 Score=91.42 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-----hHHHHHHHHHHHH
Q psy13780 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-----DLGCASDTFRYFA 78 (100)
Q Consensus 4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-----ev~~~~~~~~~~a 78 (100)
+.+.+|++|++||+ .|+++|+.+|..+|.+++++|.+|+++|+.+++.|+|||..++.. ++...+..++|++
T Consensus 85 ~~~~av~aA~~A~~---~W~~~~~~~R~~vL~~~a~~l~~~~~elA~~~~~etGk~~~~a~e~gkp~~~~r~i~~~~~~~ 161 (551)
T TIGR02288 85 DGDALLDAAHAALP---GWRDAGARARAGVCLEILQRLNARSFEIAHAVMHTTGQAFMMAFQAGGPHAQDRGLEAVAYAY 161 (551)
T ss_pred CHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhCCCHHHHHhccChHHHHHHHHHHHHHH
Confidence 35899999999999 999999999999999999999999999999999999999987742 6778899999999
Q ss_pred hchhhhcCc
Q psy13780 79 GWCDKIEGS 87 (100)
Q Consensus 79 ~~~~~~~~~ 87 (100)
....++.+.
T Consensus 162 ~~~~~~~g~ 170 (551)
T TIGR02288 162 REMSRIPET 170 (551)
T ss_pred HHHHhccCc
Confidence 887666543
No 114
>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.
Probab=99.31 E-value=1.1e-11 Score=88.39 Aligned_cols=69 Identities=29% Similarity=0.275 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHh
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAG 79 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~ 79 (100)
-+|++.|+++|++||+ .|+.+|..+|.++|.+++++|.+|.++|+++++.|+|||..++. +..+++++.
T Consensus 3 ~~~v~~av~~A~~A~~---~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~E~Gk~~~~~~------~~~~~~~~~ 71 (429)
T cd07121 3 FATVDDAVAAAKAAQK---QYRKCTLADREKIIEAIREALLSNAEELAEMAVEETGMGRVEDK------IAKNHLAAE 71 (429)
T ss_pred hhhHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHH
Confidence 3689999999999999 99999999999999999999999999999999999999997664 334555544
No 115
>KOG2452|consensus
Probab=99.30 E-value=1.4e-12 Score=93.08 Aligned_cols=90 Identities=50% Similarity=0.939 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhc
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGW 80 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~ 80 (100)
..||+.|+.+|+.||..| .|.+++..+|.+.|.+++++|++|.++|+.+.+.+.|.-..-+.- .|..+++.++||+.+
T Consensus 458 v~dvd~av~aak~afe~g-~w~~~sar~rg~~~y~la~lme~h~eelat~e~ldagavytlalkthvgmsi~~~ryfagw 536 (881)
T KOG2452|consen 458 VTDVDKAVAAAKGAFENG-RWGKISARDRGRLMYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGW 536 (881)
T ss_pred hhhHHHHHHHHhhhhhcC-cccccchhhhhhhhhhccchhhhccchhhhhhhccccceeeeeehhhcCceehHHHHhhhh
Confidence 468999999999999865 999999999999999999999999999999999999988777654 899999999999999
Q ss_pred hhhhcCcccCCC
Q psy13780 81 CDKIEGSTIPSE 92 (100)
Q Consensus 81 ~~~~~~~~~~~~ 92 (100)
.+++.+..+|.+
T Consensus 537 cdkiqg~tipi~ 548 (881)
T KOG2452|consen 537 CDKIQGSTIPIN 548 (881)
T ss_pred hhhccCceeccc
Confidence 999998877654
No 116
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.30 E-value=2.2e-11 Score=91.45 Aligned_cols=81 Identities=14% Similarity=0.265 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHcC--CChHHHH----hhHHHH
Q psy13780 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLE------TLDNG--KPYEDSI----FDLGCA 70 (100)
Q Consensus 3 ~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~------~~e~G--k~~~~a~----~ev~~~ 70 (100)
+.++.++++|++||+ .|+.+|+.+|.++|.++++.|.+|.++|++++ +.|+| ||+.++. .|+..+
T Consensus 294 ~~~~~~~~aA~~A~~---~W~~~~~~eR~~~L~~~a~~l~~~~~ela~~~~~d~~~~~E~G~~k~~~~~~~~~~~ev~~~ 370 (718)
T PLN02418 294 VGAREMAVAARESSR---KLQALSSEERKKILLDVADALEANEELIKAENELDVAAAQEAGYEKSLVSRLTLKPGKIASL 370 (718)
T ss_pred HHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHhCCchhHHHHHhccHHHHHHH
Confidence 358999999999999 99999999999999999999999999999996 77999 8887763 499999
Q ss_pred HHHHHHHHhchhhhcCc
Q psy13780 71 SDTFRYFAGWCDKIEGS 87 (100)
Q Consensus 71 ~~~~~~~a~~~~~~~~~ 87 (100)
+..++||+.. ....+.
T Consensus 371 ~~~~~~~a~~-~~~~g~ 386 (718)
T PLN02418 371 AASIRQLADM-EDPIGR 386 (718)
T ss_pred HHHHHHHhcC-ccccCc
Confidence 9999999998 334343
No 117
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=99.30 E-value=2.2e-11 Score=92.98 Aligned_cols=75 Identities=19% Similarity=0.093 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFA 78 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a 78 (100)
+.+||+.+|++|+.||+ .|+++|.++|.++|.+++++|.+++++|+++++.|+|||..++.. ++..++..+.++.
T Consensus 10 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~EtGk~~~e~~~~~~~~~~~~~~~~~ 85 (862)
T PRK13805 10 NVAELDALVEKAKKAQE---EFATFTQEQVDKIVRAAALAALDARIPLAKMAVEETGRGVVEDKVIKNHFASEYIYNSY 85 (862)
T ss_pred CHHHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999 999999999999999999999999999999999999999988875 4544545554443
No 118
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=99.28 E-value=1.6e-11 Score=87.33 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCh----HHHH--------hhHHH
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY----EDSI--------FDLGC 69 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~----~~a~--------~ev~~ 69 (100)
.+|++.++++|+.||+ .|+.+|..+|.++|++++++|++|+++|+++++.|+|++. .++. .|+..
T Consensus 3 ~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~g~~~~~g~~~~~~~~~~~~~~ev~~ 79 (417)
T PRK00197 3 MEYLEELGRRAKAASR---KLAQLSTAQKNRALLAIADALEANAAEILAANAKDLAAARANGLSAAMLDRLLLTEARIEG 79 (417)
T ss_pred hhHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCHHHHHH
Confidence 4789999999999999 9999999999999999999999999999999998887774 2432 47888
Q ss_pred HHHHHHHHHhchhh
Q psy13780 70 ASDTFRYFAGWCDK 83 (100)
Q Consensus 70 ~~~~~~~~a~~~~~ 83 (100)
++..+++++.....
T Consensus 80 ~~~~~~~~a~~~~~ 93 (417)
T PRK00197 80 IAEGLRQVAALPDP 93 (417)
T ss_pred HHHHHHHHhhcCCC
Confidence 99999999876543
No 119
>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family. The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer
Probab=99.26 E-value=6.1e-11 Score=84.24 Aligned_cols=79 Identities=43% Similarity=0.778 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhhhc
Q psy13780 6 DKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIE 85 (100)
Q Consensus 6 ~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~ 85 (100)
+++++.|+.||. .|+.+|..+|.++|.++++.|.++.++|+.+++.|+|+|...+..|+..++..+++++..+.++.
T Consensus 1 ~~av~~a~~a~~---~w~~~~~~~R~~~l~~~~~~l~~~~~~l~~~~~~etG~~~~~~~~ei~~~i~~l~~~~~~~~~~~ 77 (432)
T cd07078 1 DAAVAAARAAFK---AWAALPPAERAAILRKLADLLEERREELAALETLETGKPIEEALGEVARAADTFRYYAGLARRLH 77 (432)
T ss_pred CHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 368999999999 99999999999999999999999999999999999999998888899999999999998887765
Q ss_pred Cc
Q psy13780 86 GS 87 (100)
Q Consensus 86 ~~ 87 (100)
+.
T Consensus 78 ~~ 79 (432)
T cd07078 78 GE 79 (432)
T ss_pred Cc
Confidence 44
No 120
>KOG2453|consensus
Probab=99.23 E-value=3e-11 Score=83.13 Aligned_cols=94 Identities=24% Similarity=0.463 Sum_probs=88.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|.+.++..+++|++ .|...|...|.++.+++.|.|+...+.|-.+++.||||...+...||...++.|+|....
T Consensus 53 sv~dye~~~k~a~ea~k---iw~~vpapkrgeivrqigdalr~klq~lg~lvslemgkilaegvgevqeyvdicdyavgl 129 (507)
T KOG2453|consen 53 SVQDYEIAIKEAKEAYK---IWCEVPAPKRGEIVRQIGDALRTKLQNLGKLVSLEMGKILAEGVGEVQEYVDICDYAVGL 129 (507)
T ss_pred cHHHHHHHHHHHHHHHH---HHhcCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhcchhHHHHHHHHHHhhhh
Confidence 45789999999999999 999999999999999999999999999999999999999999989999999999999999
Q ss_pred hhhhcCcccCCCCCCcc
Q psy13780 81 CDKIEGSTIPSESKDNI 97 (100)
Q Consensus 81 ~~~~~~~~~~~~~~~~~ 97 (100)
.+.+.+...|+..++|.
T Consensus 130 sr~l~g~i~pserpgha 146 (507)
T KOG2453|consen 130 SRSLEGKIFPSERPGHA 146 (507)
T ss_pred hhhhCCcccCCCCCchh
Confidence 99999998888877764
No 121
>KOG2455|consensus
Probab=99.23 E-value=1.6e-10 Score=81.67 Aligned_cols=87 Identities=25% Similarity=0.308 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHcCCChHHHHhh-HHHHHHHHHHHHh
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELID-KNVDYLASLETLDNGKPYEDSIFD-LGCASDTFRYFAG 79 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~-~~~~~l~~~~~~e~Gk~~~~a~~e-v~~~~~~~~~~a~ 79 (100)
..+|+.||++|.+|++ .|..+|..+|.+++.+.+++|. +++-+|....+.-.||++.+|..+ +...++++|+++.
T Consensus 95 ~k~ie~AIkaAl~a~~---~W~~~PiadR~aI~lkAAdlistkyr~~l~aatMlgqgKt~~qAeiDa~~eLidf~R~na~ 171 (561)
T KOG2455|consen 95 KKQIEKAIKAALSAQK---TWELVPIADRLAIFLKAADLISTKYRYDLLAATMLGQGKTAIQAEIDAAAELIDFFRFNAK 171 (561)
T ss_pred HHHHHHHHHHHHhhcC---ccccCcHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhHH
Confidence 5789999999999999 9999999999999999999999 889999989999999999999885 8899999999999
Q ss_pred chhhhcCcccCC
Q psy13780 80 WCDKIEGSTIPS 91 (100)
Q Consensus 80 ~~~~~~~~~~~~ 91 (100)
++.++...++..
T Consensus 172 ya~eL~~~qpi~ 183 (561)
T KOG2455|consen 172 YASELYAQQPIS 183 (561)
T ss_pred HHHHhhhcCCcc
Confidence 998887665444
No 122
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=99.22 E-value=1.2e-10 Score=81.27 Aligned_cols=73 Identities=44% Similarity=0.762 Sum_probs=68.8
Q ss_pred HHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhhhcC
Q psy13780 11 SAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEG 86 (100)
Q Consensus 11 ~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~ 86 (100)
+|+.+|. .|+.++..+|.++|.++++.|.++.++|+.+++.|+|||+.++..|+..+++.+++++..+..+.+
T Consensus 2 ~a~~a~~---~w~~~~~~~R~~~l~~l~~~l~~~~~~l~~~~~~e~Gk~~~~~~~ev~~~~~~l~~~~~~~~~~~~ 74 (367)
T cd06534 2 AARAAFK---AWAALPPAERAAILRKIADLLEERREELAALETLETGKPIEEALGEVARAIDTFRYAAGLADKLGG 74 (367)
T ss_pred hHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5788999 999999999999999999999999999999999999999999999999999999999998877654
No 123
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=99.22 E-value=1.4e-10 Score=83.92 Aligned_cols=76 Identities=17% Similarity=0.073 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.++++|+.||+ .|+.+|.++|.++|.+++++|.+++++|++++..|+|||..+... +.......+.+++.
T Consensus 6 ~~~~v~~av~~A~~A~~---~w~~~s~~~R~~iL~~~a~~l~~~~~ela~~~~~E~Gk~~~~~~~~~~~~~~~~~~~~~~ 82 (488)
T TIGR02518 6 SIQQVRNLIRSAKVAQK---KLANMTQEQIDKIVKAIVDAAYENAVKLAKMANEETGFGKWEDKVIKNVFAATIVYDSIK 82 (488)
T ss_pred CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999 999999999999999999999999999999999999999887654 23334455555544
No 124
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=99.21 E-value=9e-11 Score=84.53 Aligned_cols=61 Identities=25% Similarity=0.268 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF 65 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ 65 (100)
.+||+.+++.|+.||. .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++..
T Consensus 35 ~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~la~~l~~~~~ela~~~~~E~Gk~~~ea~~ 95 (465)
T PRK15398 35 FASVDDAVAAAKVAQQ---RYQQKSLAMRQRIIDAIREALLPHAEELAELAVEETGMGRVEDKI 95 (465)
T ss_pred HHHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4789999999999999 999999999999999999999999999999999999999988764
No 125
>TIGR00407 proA gamma-glutamyl phosphate reductase. The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif.
Probab=99.19 E-value=5e-11 Score=84.41 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=62.9
Q ss_pred HHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHcCCCh------HHHHhhHHHHHHHHHHHHh
Q psy13780 12 AKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASL------ETLDNGKPY------EDSIFDLGCASDTFRYFAG 79 (100)
Q Consensus 12 a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~------~~~e~Gk~~------~~a~~ev~~~~~~~~~~a~ 79 (100)
|++||+ .|+++|..+|.++|.+++++|++|+++|+.+ ++.|+|||. .++..|+..++..+++++.
T Consensus 1 a~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~a~~~E~Gk~~~~~~~l~~a~~ev~~~~~~~~~~a~ 77 (398)
T TIGR00407 1 AKQAAN---ILAQLSTAEKNDALSKIADGLEAQAPAILAANAKDIAVAKENGLADALLDRLLLTEGRLKGIADGVKDVIE 77 (398)
T ss_pred ChhHHH---HHHhCCHHHHHHHHHHHHHHHHhChHHHHHHhHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 578899 9999999999999999999999999999999 999999994 2356689999999999998
Q ss_pred chhhh
Q psy13780 80 WCDKI 84 (100)
Q Consensus 80 ~~~~~ 84 (100)
.+..+
T Consensus 78 ~a~~~ 82 (398)
T TIGR00407 78 LADPV 82 (398)
T ss_pred CCCCC
Confidence 87654
No 126
>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).
Probab=99.07 E-value=3.8e-10 Score=80.11 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChH----HHH--------hhHHHHHHHH
Q psy13780 7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE----DSI--------FDLGCASDTF 74 (100)
Q Consensus 7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~----~a~--------~ev~~~~~~~ 74 (100)
..+++|+.||. .|+.+|..+|.++|.++++.|.+|+++|+.+++.|+||+.. ++. .|+..+++.+
T Consensus 2 ~~~~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~gk~~e~G~~~a~~~~l~~~~~ev~~~~~~~ 78 (406)
T cd07079 2 ELAKRAKAASR---ALATLSTEQKNAALLAIADALEANRDEILEANAKDLAAAREAGLSEALLDRLLLTPERIEAMAEGL 78 (406)
T ss_pred hHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHhchHHHHHHhhhhHHHHHHcCCCHHHHhHhcCCHHHHHHHHHHH
Confidence 46788999999 99999999999999999999999999999999777766643 332 4899999999
Q ss_pred HHHHhchh
Q psy13780 75 RYFAGWCD 82 (100)
Q Consensus 75 ~~~a~~~~ 82 (100)
++++....
T Consensus 79 ~~~a~~~~ 86 (406)
T cd07079 79 RQVAALPD 86 (406)
T ss_pred HHHHhcCC
Confidence 99987643
No 127
>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family. The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.
Probab=99.05 E-value=4.1e-10 Score=79.59 Aligned_cols=71 Identities=24% Similarity=0.123 Sum_probs=61.8
Q ss_pred HHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH-----------hhHHHHHHHHHHHHh
Q psy13780 11 SAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI-----------FDLGCASDTFRYFAG 79 (100)
Q Consensus 11 ~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~-----------~ev~~~~~~~~~~a~ 79 (100)
+|+.||+ .|+.+|..+|.++|++++++|++|+++|+++++.|+|||+.... .|+...+..+++++.
T Consensus 2 ~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~~~~~~~~~~~~~~~ev~~~~~~~~~~a~ 78 (397)
T cd07077 2 SAKNAQR---TLAVNHDEQRDLIINAIANALYDTRQRLASEAVSERGAYIRSLIANWIAMMGCSESKLYKNIDTERGITA 78 (397)
T ss_pred hHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 6889999 99999999999999999999999999999999999999965432 378889999999987
Q ss_pred chhhh
Q psy13780 80 WCDKI 84 (100)
Q Consensus 80 ~~~~~ 84 (100)
...+.
T Consensus 79 ~~~~~ 83 (397)
T cd07077 79 SVGHI 83 (397)
T ss_pred hcCcc
Confidence 54443
No 128
>KOG2454|consensus
Probab=99.03 E-value=5e-10 Score=78.44 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
++.||++-|..|++|++ .|...+...|++.|+.+.++|.+|.|.+++..++|+||++.++.. |+..+..-+.|...
T Consensus 84 ~~tdide~v~la~kAQk---tW~~ssF~~Rr~fL~~L~~yIi~nQdliaevacrDtGKTmvDAs~GEIlvTlEKI~Wtl~ 160 (583)
T KOG2454|consen 84 SPTDIDERVTLARKAQK---TWAQSSFKLRRQFLRILLKYIIENQDLIAEVACRDTGKTMVDASLGEILVTLEKITWTLS 160 (583)
T ss_pred ChhhHHHHHHHHHHHHh---hhhhccHHHHHHHHHHHHHHHhhchhheeeeeecccCchhhhhhHhHHHHHHHHhhhhhh
Confidence 46799999999999999 999999999999999999999999999999999999999999876 99999999999999
Q ss_pred chhhhcCcc
Q psy13780 80 WCDKIEGST 88 (100)
Q Consensus 80 ~~~~~~~~~ 88 (100)
+..+|..+.
T Consensus 161 ~Ger~L~P~ 169 (583)
T KOG2454|consen 161 EGERWLKPE 169 (583)
T ss_pred cchhhcCCc
Confidence 998887654
No 129
>KOG2456|consensus
Probab=99.02 E-value=7e-09 Score=72.92 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhchh
Q psy13780 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGWCD 82 (100)
Q Consensus 4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~ 82 (100)
.+...+..+|.+|. ..+..|.+.|...|.++...+++|+++|.+++..|.+||..++.. |+......++|+.++++
T Consensus 3 ~~~~~v~~~R~~F~---sGrtr~~efR~~QL~~L~r~i~e~e~~i~~Al~~DL~k~~~es~~~Ev~~~~~~i~~~l~~L~ 79 (477)
T KOG2456|consen 3 AISETVRRLRLAFS---SGRTRPLEFRKQQLEALYRMIQENEKEIIEALAADLHKPELESYLNEVGYVLNEIRYALENLP 79 (477)
T ss_pred cHHHHHHHHHHHHh---cCCcCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhH
Confidence 35667899999999 778999999999999999999999999999999999999999987 99999999999999999
Q ss_pred hhcCcccCC
Q psy13780 83 KIEGSTIPS 91 (100)
Q Consensus 83 ~~~~~~~~~ 91 (100)
+|..+....
T Consensus 80 ~wv~~~~v~ 88 (477)
T KOG2456|consen 80 EWVKPEPVK 88 (477)
T ss_pred HhccccccC
Confidence 998765443
No 130
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=98.78 E-value=4.5e-08 Score=73.87 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh----------------hH
Q psy13780 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF----------------DL 67 (100)
Q Consensus 4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~----------------ev 67 (100)
.+...+.+|++||+ .|+.+|.++|.++|.+++++|++|+++|+ .++||++.++.. |+
T Consensus 287 ~~~~~~~~A~~A~~---~w~~~~~~~R~~~L~~la~~l~~~~eei~----~e~gkdl~~a~~~~~~~~~~~el~~~~~ei 359 (715)
T TIGR01092 287 GERDMAVAARESSR---MLQALSSEQRKEILHDIADALEDNEDEIL----AENKKDVAAAQGAGYAASLVARLSMSPSKI 359 (715)
T ss_pred HHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHhcCcchhHHHHHhCCHHHH
Confidence 47788999999999 99999999999999999999999999996 588888876654 36
Q ss_pred HHHHHHHHHHHhc
Q psy13780 68 GCASDTFRYFAGW 80 (100)
Q Consensus 68 ~~~~~~~~~~a~~ 80 (100)
..++..++++++.
T Consensus 360 ~~~~~~l~~~a~~ 372 (715)
T TIGR01092 360 SSLAISLRQLAAM 372 (715)
T ss_pred HHHHHHHHHHhcC
Confidence 7788888888873
No 131
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=98.58 E-value=2.6e-07 Score=65.80 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhhhcCc
Q psy13780 34 IYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEGS 87 (100)
Q Consensus 34 L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~~ 87 (100)
|++++++|++|+++|+++++.|+|||..++..||..+++.++|++..+..+.+.
T Consensus 1 L~~~a~~l~~~~~el~~~~~~e~Gk~~~ea~~Ev~~~~~~~~~~a~~~~~~~~~ 54 (409)
T PRK10090 1 LRKIAAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGE 54 (409)
T ss_pred CHHHHHHHHHCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 578999999999999999999999999999889999999999999988766543
No 132
>KOG4165|consensus
Probab=95.32 E-value=0.045 Score=38.52 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780 5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLAS 50 (100)
Q Consensus 5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~ 50 (100)
+++....||.+++ ....++.++|.++|..++++|..+..+|.+
T Consensus 2 ~e~~a~~aR~a~r---~LqaLs~e~R~~il~~iad~L~~~~~~I~~ 44 (433)
T KOG4165|consen 2 VEEMAENAREAGR---ILQALSNEDRADILHHIADLLVDNEKEILA 44 (433)
T ss_pred HHHHHHHHHHHhh---HHHhcChhhHHHHHHHHHHHHHhhHHHHHh
Confidence 4566778999998 889999999999999999999998877764
No 133
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=90.01 E-value=1.5 Score=31.80 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy13780 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETL 54 (100)
Q Consensus 3 ~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~ 54 (100)
.++......|+.|+. ....++..+|-+.|.++++.|+.++++|.+.=..
T Consensus 3 ~~~~~~~~~Ak~A~~---~La~~st~~Kn~aL~a~A~~L~~~~~~IL~AN~~ 51 (417)
T COG0014 3 SELEELGKRAKAASR---KLATLSTEEKNRALLAMADALEAARAEILAANAK 51 (417)
T ss_pred hHHHHHHHHHHHHHH---HHhhcChhhHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 567778888999998 8899999999999999999999999988865433
No 134
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=86.14 E-value=0.9 Score=23.09 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=18.4
Q ss_pred ccccCCHHHHHHHHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELI 41 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l 41 (100)
.|..++.++|.++|.++...+
T Consensus 29 ~W~~~s~~er~~i~~~l~~R~ 49 (51)
T PF06945_consen 29 DWKSMSDDERRAILARLRARR 49 (51)
T ss_pred HHhhCCHHHHHHHHHHHHHHh
Confidence 699999999999999887654
No 135
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=84.54 E-value=1.3 Score=23.37 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHH
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAEL 40 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~ 40 (100)
.+|+..++..--.|.. .|..+|...|..++..+...
T Consensus 7 P~dl~~aL~~~p~a~~---~f~~l~~~~rr~~i~wi~~A 42 (63)
T PF13376_consen 7 PEDLEAALEANPEAKE---FFESLTPSYRREYIRWINSA 42 (63)
T ss_pred CHHHHHHHHCCHHHHH---HHHHCCHHHHHHHHHHHHHc
Confidence 4688888888888888 89999999999998877643
No 136
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=83.54 E-value=3.7 Score=21.15 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=24.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYL 48 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 48 (100)
.|..+|.++|..+.........++..++
T Consensus 38 ~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 38 KWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999888887777654
No 137
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=80.49 E-value=6.1 Score=21.16 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=27.5
Q ss_pred HHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780 11 SAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLAS 50 (100)
Q Consensus 11 ~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~ 50 (100)
....+-. .|..||.++|..+-.+....=..+..++..
T Consensus 35 ~~k~~~~---~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~ 71 (73)
T PF09011_consen 35 VMKEISE---RWKSLSEEEKEPYEERAKEDKERYEREMKE 71 (73)
T ss_dssp HHHHHHH---HHHHS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444556 899999999999999888777776666643
No 138
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=78.82 E-value=6.4 Score=20.45 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=26.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLAS 50 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~ 50 (100)
.|..+|.++|..+..........+..++..
T Consensus 38 ~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~ 67 (69)
T PF00505_consen 38 MWKNLSEEEKAPYKEEAEEEKERYEKEMPE 67 (69)
T ss_dssp HHHCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999998888888777653
No 139
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=78.58 E-value=5.2 Score=19.33 Aligned_cols=28 Identities=4% Similarity=0.076 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q psy13780 30 RGKLIYKLAELIDKNVDYLASLETLDNG 57 (100)
Q Consensus 30 R~~~L~~~~~~l~~~~~~l~~~~~~e~G 57 (100)
..++|.-+...|.+-+++|+.++..|..
T Consensus 9 KqEIL~EvrkEl~K~K~EIIeA~~~eL~ 36 (40)
T PF08776_consen 9 KQEILEEVRKELQKVKEEIIEAIRQELS 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888999999999999999887764
No 140
>cd07080 ALDH_Acyl-CoA-Red_LuxC Acyl-CoA reductase LuxC. Acyl-CoA reductase, LuxC, (EC=1.2.1.50) is the fatty acid reductase enzyme responsible for synthesis of the aldehyde substrate for the luminescent reaction catalyzed by luciferase. The fatty acid reductase, a luminescence-specific, multienzyme complex (LuxCDE), reduces myristic acid to generate the long chain fatty aldehyde required for the luciferase-catalyzed reaction resulting in the emission of blue-green light. Mutational studies of conserved cysteines of LuxC revealed that the cysteine which aligns with the catalytic cysteine conserved throughout the ALDH superfamily is the LuxC acylation site. This CD is composed of mainly bacterial sequences but also includes a few archaeal sequences similar to the Methanospirillum hungateiacyl acyl-CoA reductase RfbN.
Probab=75.16 E-value=6.5 Score=28.49 Aligned_cols=57 Identities=16% Similarity=-0.022 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHcCCChHHHH
Q psy13780 5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASL---ETLDNGKPYEDSI 64 (100)
Q Consensus 5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~---~~~e~Gk~~~~a~ 64 (100)
++..++..+++++ .|..-+...|...++++...+..+.+.+... +.....|+..+..
T Consensus 26 ~~~iv~~l~~~~~---~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~a~~~l~~~~~r~~l~~~ 85 (422)
T cd07080 26 VEEIVDFLDRAGK---RLLDPDYPLRQQAERLLPTVTGYSEEMLREGLKRLMALFRRENLERI 85 (422)
T ss_pred HHHHHHHHHHHHH---HhcCCCchHHHHHHHhhhhccCCCHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4566777777787 7887788888888888888888887777777 6666665555443
No 141
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=74.94 E-value=18 Score=23.31 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCHHHHHHH--HHHHHHHHHHhHHHHHH
Q psy13780 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKL--IYKLAELIDKNVDYLAS 50 (100)
Q Consensus 3 ~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~--L~~~~~~l~~~~~~l~~ 50 (100)
.|++..+-..+..|- ++++.++|.++ |..+...+....+||-.
T Consensus 122 ~dlE~~l~~QQalvy-----~hMSeeER~EaeQLQsLR~avRqElqELE~ 166 (179)
T PF14723_consen 122 MDLELHLMRQQALVY-----RHMSEEEREEAEQLQSLRSAVRQELQELEF 166 (179)
T ss_pred HHHHHHHHHhHHHHH-----hcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777766654 68999999866 88888888877666643
No 142
>smart00398 HMG high mobility group.
Probab=74.43 E-value=10 Score=19.54 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=25.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLA 49 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~ 49 (100)
.|..+|.++|..+..........+..++.
T Consensus 39 ~W~~l~~~ek~~y~~~a~~~~~~y~~~~~ 67 (70)
T smart00398 39 RWKLLSEEEKAPYEEKAKKDKERYEEEMP 67 (70)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999998888888776654
No 143
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=71.45 E-value=21 Score=21.83 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH
Q psy13780 24 NLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI 64 (100)
Q Consensus 24 ~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~ 64 (100)
..++++|.++..++.+++.+|--.-..-+...+|-+.....
T Consensus 4 ~~T~eer~eLk~rIvElVRe~GRiTi~ql~~~TGasR~Tvk 44 (127)
T PF06163_consen 4 VFTPEEREELKARIVELVREHGRITIKQLVAKTGASRNTVK 44 (127)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCccHHHHHHHHCCCHHHHH
Confidence 47899999999999999999955444455677888776553
No 144
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=70.77 E-value=12 Score=19.99 Aligned_cols=28 Identities=11% Similarity=0.269 Sum_probs=23.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYL 48 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 48 (100)
.|..+|.++|............++..+.
T Consensus 39 ~Wk~ls~~eK~~y~~~a~~~k~~y~~~~ 66 (72)
T cd01388 39 RWKALSNEEKQPYYEEAKKLKELHMKLY 66 (72)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 7999999999998888877777776553
No 145
>COG3313 Predicted Fe-S protein [General function prediction only]
Probab=70.41 E-value=5.9 Score=21.84 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=18.1
Q ss_pred ccccCCHHHHHHHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAEL 40 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~ 40 (100)
.|..++..+|.++|..+...
T Consensus 34 ~W~~msd~Er~aVl~~l~qr 53 (74)
T COG3313 34 NWSSMSDDERRAVLRLLPQR 53 (74)
T ss_pred HHhhCCHHHHHHHHHHhHHH
Confidence 69999999999999988765
No 146
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=69.45 E-value=11 Score=18.64 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=17.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHH
Q psy13780 23 RNLDASGRGKLIYKLAELIDK 43 (100)
Q Consensus 23 ~~~~~~~R~~~L~~~~~~l~~ 43 (100)
...++.+|..+-.+|++.|..
T Consensus 22 ~~V~~~qR~~iAe~Fa~AL~~ 42 (44)
T PF07208_consen 22 TSVPPAQRQAIAEKFAQALKS 42 (44)
T ss_dssp HCS-HHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHh
Confidence 467999999999999998864
No 147
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=68.93 E-value=6 Score=25.76 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDK 43 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~ 43 (100)
.|+..++++|.+....|..+|..
T Consensus 77 ~W~~~s~~Qr~~F~~~F~~~l~~ 99 (198)
T TIGR03481 77 SWTSLSPEQRRRFIGAFRELSIA 99 (198)
T ss_pred hhhhCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999999987664
No 148
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=68.37 E-value=7.5 Score=24.37 Aligned_cols=24 Identities=17% Similarity=0.516 Sum_probs=20.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHh
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~ 44 (100)
.|+.+++++|.+....|...|...
T Consensus 51 ~w~~~s~~q~~~F~~~f~~~l~~~ 74 (170)
T PF05494_consen 51 YWRKASPAQRQRFVEAFKQLLVRT 74 (170)
T ss_dssp GTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hHhhCCHHHHHHHHHHHHHHHHHH
Confidence 799999999999998888887664
No 149
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=67.35 E-value=7.8 Score=22.31 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=20.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNG 57 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~G 57 (100)
..++++.++|......+...+.++.+.+..-...++|
T Consensus 56 n~~~ms~~e~~k~~~ev~k~~~~~~~~mS~kE~~~~g 92 (93)
T PF06518_consen 56 NLSKMSVEERKKRREEVRKALEKRIKKMSVKEAKESG 92 (93)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHT----S--------
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 4567899999999999998888888777655555554
No 150
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=66.80 E-value=15 Score=18.55 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=22.8
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDY 47 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~ 47 (100)
.|..++.++|..+..........+..+
T Consensus 38 ~W~~l~~~~k~~y~~~a~~~~~~y~~~ 64 (66)
T cd00084 38 MWKSLSEEEKKKYEEKAEKDKERYEKE 64 (66)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999988888777776654
No 151
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=65.43 E-value=8 Score=25.45 Aligned_cols=23 Identities=9% Similarity=0.274 Sum_probs=21.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDK 43 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~ 43 (100)
.|+..++++|.+....|.++|..
T Consensus 81 ~wr~as~eQr~~F~~~F~~~Lv~ 103 (211)
T PRK15117 81 YYKDATPAQREAYFAAFREYLKQ 103 (211)
T ss_pred hhhhCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999999998875
No 152
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=59.80 E-value=24 Score=22.38 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=30.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHcCCChHHHH
Q psy13780 23 RNLDASGRGKLIYKLAELIDKNVDY--LASLETLDNGKPYEDSI 64 (100)
Q Consensus 23 ~~~~~~~R~~~L~~~~~~l~~~~~~--l~~~~~~e~Gk~~~~a~ 64 (100)
+.+|.++|.+.+.-..+++++..++ =-+-+..+.|.|..-|+
T Consensus 15 ~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~ 58 (181)
T PF08006_consen 15 KKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAR 58 (181)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHH
Confidence 4699999999999999888876542 12334578888876554
No 153
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=59.58 E-value=20 Score=17.61 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=17.3
Q ss_pred ccccCCHHHHHHHHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELI 41 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l 41 (100)
.+-.+++.+|..+|..+.+.+
T Consensus 13 ~y~~L~~~~kl~iL~~L~~~~ 33 (50)
T PF15612_consen 13 EYYELSPEEKLEILRALCDQL 33 (50)
T ss_dssp TCCCS-HHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHH
Confidence 566799999999999998876
No 154
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=56.05 E-value=31 Score=18.51 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=22.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYL 48 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 48 (100)
.|..++.++|..+.......-+.|..++
T Consensus 39 ~Wk~ls~eeK~~y~~~A~~~k~~~~~~~ 66 (77)
T cd01389 39 MWRSESPEVKAYYKELAEEEKERHAREY 66 (77)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 7999999999988877777766666543
No 155
>COG4709 Predicted membrane protein [Function unknown]
Probab=55.79 E-value=31 Score=22.57 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=26.8
Q ss_pred cccCCHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHcCCChHHH
Q psy13780 22 WRNLDASGRGKLIYKLAELIDKNVDYL--ASLETLDNGKPYEDS 63 (100)
Q Consensus 22 w~~~~~~~R~~~L~~~~~~l~~~~~~l--~~~~~~e~Gk~~~~a 63 (100)
.+.+|.++|.+.|.-.-+.+.+-.++= -+-+..+.|.|..-|
T Consensus 14 L~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA 57 (195)
T COG4709 14 LEGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIA 57 (195)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHH
Confidence 357899999999887776666543322 223445667766544
No 156
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=54.21 E-value=23 Score=20.79 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=11.3
Q ss_pred ccccCCHHHHHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLA 38 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~ 38 (100)
.|..||+++|..+-.++.
T Consensus 55 ~W~~LspeqR~~~R~~~~ 72 (107)
T PF11304_consen 55 RWAALSPEQRQQARENYQ 72 (107)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 566677776666655544
No 157
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=52.00 E-value=28 Score=20.91 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhHHH
Q psy13780 23 RNLDASGRGKLIYKLAELIDKNVDY 47 (100)
Q Consensus 23 ~~~~~~~R~~~L~~~~~~l~~~~~~ 47 (100)
.++|..+|..++..+..++.++.++
T Consensus 22 ~dl~~~~~k~LqkeLn~Lm~~nTEe 46 (126)
T PF10654_consen 22 NDLSFSKRKELQKELNQLMNENTEE 46 (126)
T ss_pred CCCChHHHHHHHHHHHHHHhcchHH
Confidence 5799999999999999999988654
No 158
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=50.87 E-value=24 Score=18.78 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHH
Q psy13780 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELID 42 (100)
Q Consensus 4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~ 42 (100)
+.+.+|..|+.|... .+++.+..+|..+ +.|-+.|.
T Consensus 25 ~~q~~i~rAKnAlsS--Ayanss~aE~~QL-~q~Q~qL~ 60 (63)
T PF12758_consen 25 EQQKAIQRAKNALSS--AYANSSDAEREQL-RQFQDQLD 60 (63)
T ss_pred HHHHHHHHHHHHHHH--HHHcCCHHHHHHH-HHHHHHHH
Confidence 566778888877762 6778888888654 44444443
No 159
>PF14376 Haem_bd: Haem-binding domain
Probab=50.04 E-value=49 Score=20.20 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy13780 5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLET 53 (100)
Q Consensus 5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~ 53 (100)
+..-|...+++|. ++.|...+.......|.++...|++..--+..-+.
T Consensus 67 ~~~dI~~Gr~~lN-fs~~~~~~~~~~~~~l~~i~~~I~~g~MP~~~Y~~ 114 (137)
T PF14376_consen 67 MEKDIKEGRRHLN-FSEWGSYSKRKQEAKLAKIEEVIEDGEMPPPSYTL 114 (137)
T ss_pred HHHHHHHHHHHhC-cchhhhcCcccCHHHHHHHHHHHHcCCCChHHHhh
Confidence 5566778888885 55898888888888888888888876555544433
No 160
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=49.48 E-value=84 Score=21.62 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhcCCCccc---cCCHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHcC
Q psy13780 3 ADVDKAVESAKAAFKRGSVWR---NLDASGRGKLIYKLAELIDKN-VDYLASLETLDNG 57 (100)
Q Consensus 3 ~~v~~ai~~a~~a~~~~~~w~---~~~~~~R~~~L~~~~~~l~~~-~~~l~~~~~~e~G 57 (100)
.-|...+..|+...+ ... ..++.+..+++.+|...+... .+.|..+++.|.+
T Consensus 149 ~tVr~~l~RAr~~Lr---~~~~~~~~~~~~~~~~~~~f~~a~~~gd~~~l~~ll~~d~~ 204 (290)
T PRK09635 149 STCRQLAHRARRKIN---ESRIAASVEPAQHRVVTRAFIEACSNGDLDTLLEVLDPGVA 204 (290)
T ss_pred HHHHHHHHHHHHHHH---hhCCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHhhhhhc
Confidence 445566667776665 321 256677889999999998876 8999999988876
No 161
>PF09655 Nitr_red_assoc: Conserved nitrate reductase-associated protein (Nitr_red_assoc); InterPro: IPR013481 Proteins in this entry are found in the Cyanobacteria, and are mostly encoded near nitrate reductase and molybdopterin biosynthesis genes. Molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. These proteins are sometimes annotated as nitrate reductase-associated proteins, though their function is unknown.
Probab=49.26 E-value=34 Score=21.34 Aligned_cols=41 Identities=24% Similarity=0.411 Sum_probs=31.3
Q ss_pred ccccCCHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHcCCChH
Q psy13780 21 VWRNLDASGRGKLIYKL---AELIDKNVDYLASLETLDNGKPYE 61 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~---~~~l~~~~~~l~~~~~~e~Gk~~~ 61 (100)
.|..+|.++|..+..-- ...+..+++-|..++..-+|.|..
T Consensus 34 ~W~~l~~~eRq~Lv~~pc~t~~ei~~yr~~L~~li~~~~~~~~~ 77 (144)
T PF09655_consen 34 HWQQLSQEERQQLVDLPCDTPEEIQNYREFLQELIRTHAGGPAK 77 (144)
T ss_pred HHhcCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 69999999999887643 456677788888888777776643
No 162
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=48.92 E-value=44 Score=18.18 Aligned_cols=36 Identities=11% Similarity=-0.060 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 45 VDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 45 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|+..++..+|.+..++..-+....+.+......
T Consensus 2 K~~l~~~ia~~~~~~~~~v~~vl~~~~~~i~~~L~~ 37 (87)
T cd00591 2 KSELIEAIAEKTGLSKKDAEAAVDAFLDVITEALAK 37 (87)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 578899999999999888876666666666555444
No 163
>PF09720 Unstab_antitox: Putative addiction module component; InterPro: IPR013406 This entry defines several short bacterial proteins, typically about 75 amino acids long, which are always found as part of a pair (at least) of small genes. The other protein in the pair always belongs to a family of plasmid stabilisation proteins (IPR007712 from INTERPRO). It is likely that this protein and its partner comprise some form of addiction module - a pair of genes consisting of a stable toxin and an unstable antitoxin which mediate programmed cell death [] - although these gene pairs are usually found on the bacterial main chromosome.
Probab=48.88 E-value=21 Score=17.92 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHh
Q psy13780 24 NLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 24 ~~~~~~R~~~L~~~~~~l~~~ 44 (100)
++|+.+|..++..+.+-|...
T Consensus 1 ~L~~~er~~L~e~L~~sl~~~ 21 (54)
T PF09720_consen 1 QLPPEERAELAEELWDSLDDP 21 (54)
T ss_pred CcCHHHHHHHHHHHHHHhccc
Confidence 478999999988887776653
No 164
>PRK12276 putative heme peroxidase; Provisional
Probab=48.04 E-value=24 Score=24.00 Aligned_cols=26 Identities=15% Similarity=0.454 Sum_probs=23.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVD 46 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~ 46 (100)
.|+.+|..+|.+.+..+...+.+..+
T Consensus 24 ~W~~l~~~eR~~~~~e~~~~l~~~~~ 49 (248)
T PRK12276 24 AWKTLSSDEREAAVDEFLAFLEKWEE 49 (248)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999977653
No 165
>PTZ00199 high mobility group protein; Provisional
Probab=46.42 E-value=54 Score=18.53 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=24.5
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLAS 50 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~ 50 (100)
.|..+|.++|..+..........+..++..
T Consensus 62 ~Wk~ls~eeK~~y~~~A~~dk~rY~~e~~~ 91 (94)
T PTZ00199 62 AWNKLSEEEKAPYEKKAQEDKVRYEKEKAE 91 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999988887777777766653
No 166
>PF07205 DUF1413: Domain of unknown function (DUF1413); InterPro: IPR010813 This family consists of several hypothetical bacterial proteins, which seem to be specific to Staphylococcus species. Members of this family are typically around 100 residues in length. The function of this family is unknown.
Probab=43.80 E-value=39 Score=17.98 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=22.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVD 46 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~ 46 (100)
.|..++..+|..+=..|...+..+..
T Consensus 27 ~w~~~s~~~r~~~g~~F~~~V~~~~~ 52 (70)
T PF07205_consen 27 EWNTLSRAERQSLGRAFLYEVKQGPI 52 (70)
T ss_pred hhhhCCHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999999999888877643
No 167
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=43.59 E-value=39 Score=17.66 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q psy13780 24 NLDASGRGKLIYKLAELIDK 43 (100)
Q Consensus 24 ~~~~~~R~~~L~~~~~~l~~ 43 (100)
.+|+.+|..++..+-+-|..
T Consensus 2 ~L~~~ERl~Lve~LwdSL~~ 21 (63)
T TIGR02574 2 ALSPDERIQLVEDIWDSIAA 21 (63)
T ss_pred CCCHHHHHHHHHHHHHHhcc
Confidence 58999999999998887753
No 168
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=41.18 E-value=92 Score=21.51 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHH
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVD 46 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~ 46 (100)
..+.+++.+..+.-.+ .|+.-...||...+..+.+.|.+...
T Consensus 8 ~~d~~kV~s~L~q~~R---DWS~eg~~ER~~~~~~I~~~L~~~~p 49 (270)
T PF07942_consen 8 PSDMDKVRSTLKQFVR---DWSSEGEEERDPCYSPILDELESLFP 49 (270)
T ss_pred hhhHHHHHHHHHHHHh---hCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 3567777777777778 99999999999999999999888754
No 169
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=41.15 E-value=45 Score=18.68 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=26.8
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASL 51 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~ 51 (100)
.|+.++-.+|...+.+.++.-..+..+|.+.
T Consensus 40 ~W~~me~Kekl~WIkKA~EdqKrYE~el~e~ 70 (85)
T PF14887_consen 40 QWSQMEKKEKLKWIKKAAEDQKRYERELREM 70 (85)
T ss_dssp HHHTTGGGHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999888888777643
No 170
>PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes []. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found in association with the N-terminal domain in some, but not all members of this group, suggesting this is an autonomous and functionally unrelated domain. For example it is found associated with Q9JZR1 from SWISSPROT in IPR002125 from INTERPRO.; PDB: 3BQT_A 3MAB_A.
Probab=40.82 E-value=34 Score=18.99 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=11.6
Q ss_pred ccccCCHHHHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKL 37 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~ 37 (100)
.|..+|.++|.+++..+
T Consensus 65 ~~~~L~~~~K~~L~~~~ 81 (81)
T PF04994_consen 65 HWADLPDEEKQELLEWF 81 (81)
T ss_dssp -GGGS-HHHHHHHHH--
T ss_pred CHHHCCHHHHHHHHhcC
Confidence 69999999999887653
No 171
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.59 E-value=49 Score=21.88 Aligned_cols=37 Identities=5% Similarity=0.139 Sum_probs=26.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCh
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY 60 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~ 60 (100)
-|+..++++|.+....|..+|... ...++..=.|.++
T Consensus 83 ~~k~aspeQ~~~F~~aF~~yl~q~---Y~~aL~~Y~~q~~ 119 (202)
T COG2854 83 YYKTASPEQRQAFFKAFRTYLEQT---YGQALLDYKGQTL 119 (202)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHH---HHHHHHHccCCCc
Confidence 799999999999999999988874 3333333345443
No 172
>PRK09897 hypothetical protein; Provisional
Probab=40.25 E-value=44 Score=25.28 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhH
Q psy13780 7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNV 45 (100)
Q Consensus 7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~ 45 (100)
.++...+..... .|..+|.++|...++.+...+..|.
T Consensus 351 ~~i~~l~~~~~~--iw~~l~~~d~~rf~~~l~~~~~~~~ 387 (534)
T PRK09897 351 YVILRLHEAVQE--IVPHLNEHDHKRFSKGLARVFIDNY 387 (534)
T ss_pred HHHHHHHHHHHH--HHHhCCHHHHHHHHHhhhHHHHHhc
Confidence 456667765543 7999999999999999999988773
No 173
>COG4084 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.98 E-value=87 Score=19.03 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=33.3
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP 59 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~ 59 (100)
.|-..+...|..+...++.+|.=..++++.+++.-.-+.
T Consensus 24 k~il~sy~~~~DVv~pla~~L~IdveevidIl~~kld~s 62 (135)
T COG4084 24 KWILTSYAYRRDVVHPLAELLNIDVEEVIDILSRKLDCS 62 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcchh
Confidence 477788999999999999999999999999888765544
No 174
>PF13309 HTH_22: HTH domain
Probab=38.89 E-value=61 Score=16.97 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHH
Q psy13780 5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLA 38 (100)
Q Consensus 5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~ 38 (100)
++..|+.....+.. .++.++..+|.+++..+-
T Consensus 3 i~~~i~~~~~~~~~--~~~~l~~~~k~~iV~~L~ 34 (64)
T PF13309_consen 3 IESIIEEVIAEVGK--PPSRLSKEEKKEIVRQLY 34 (64)
T ss_pred HHHHHHHHHHHhCC--ChhhCCHHHHHHHHHHHH
Confidence 45666666655431 678899999999877664
No 175
>PF04698 Rab_eff_C: Rab effector MyRIP/melanophilin C-terminus; InterPro: IPR006788 MOBP is abundantly expressed in central nervous system myelin, and shares several characteristics with myelin basic protein (MBP), in terms of regional distribution and function. MOBP has been shown to be essential for normal arrangement of the radial component in central nervous system myelin [, ].
Probab=38.19 E-value=64 Score=25.42 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy13780 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETL 54 (100)
Q Consensus 3 ~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~ 54 (100)
+-|+.||..|-.... ...+ ++-+.+|.+|+++|++-++.
T Consensus 49 EAIeEAIsKAE~~~d---SleK----------QnEA~YLreHkeELiEELAt 87 (714)
T PF04698_consen 49 EAIEEAISKAEAYGD---SLEK----------QNEASYLREHKEELIEELAT 87 (714)
T ss_pred HhHHHHHHHhhccch---HHHH----------HHHHHHHHHhhHHHHHHHHH
Confidence 346666666654333 2221 35678999999999876653
No 176
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=38.10 E-value=66 Score=20.19 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=31.7
Q ss_pred ccccCC--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChH
Q psy13780 21 VWRNLD--ASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61 (100)
Q Consensus 21 ~w~~~~--~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~ 61 (100)
.|--.. ...=-+.|..+...+.++.+++++-+..-.|.|..
T Consensus 45 hW~v~G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~ 87 (162)
T PRK09448 45 HWNMKGANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALG 87 (162)
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCC
Confidence 464433 33345779999999999999999999888888865
No 177
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=37.72 E-value=64 Score=17.07 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=20.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDY 47 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~ 47 (100)
-|..++..+|..++.+++..|..-.++
T Consensus 16 ly~~l~~~er~~lv~nia~~l~~v~~~ 42 (68)
T PF06628_consen 16 LYRVLSDEERERLVENIAGHLSGVSDE 42 (68)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHTTSSHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHccCChh
Confidence 467788899988888888777555444
No 178
>PRK13689 hypothetical protein; Provisional
Probab=37.28 E-value=68 Score=17.70 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=17.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHh
Q psy13780 23 RNLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 23 ~~~~~~~R~~~L~~~~~~l~~~ 44 (100)
...++.+|..+-.+|++.|..-
T Consensus 47 ~~V~~~qR~~iAe~Fa~AL~~S 68 (75)
T PRK13689 47 TSVAPAQRQAIAESFARALQSS 68 (75)
T ss_pred hcCCHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999888653
No 179
>PF03533 SPO11_like: SPO11 homologue; InterPro: IPR004084 Spo11 is a meiosis-specific protein in yeast that covalently binds to DNA double-strand breaks (DSBs) during the early stages of meiosis []. These DSBs initiate homologous recombination, which is required for chromosomal segregation and generation of genetic diversity during meiosis. Mouse and human homologues of Spo11 have been cloned and characterised. The proteins are 82% identical and share ~25% identity with other family members. Mouse Spo11 has been localised to chromosome 2H4, and human SPO11 to chromosome 20q13.2-q13.3, a region amplified in some breast and ovarian tumours []. Similarity between SPO11 and archaebacterial TOP6A proteins points to evolutionary specialisation of a DNA-cleavage function for meiotic recombination []. Note that the yeast SPO11 protein shares far less similarity to other SPO11 proteins than the human and mouse homologues do to each other.; GO: 0003677 DNA binding, 0007131 reciprocal meiotic recombination
Probab=37.00 E-value=55 Score=15.89 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=18.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHcCCC
Q psy13780 36 KLAELIDKNVDYLASLETLDNGKP 59 (100)
Q Consensus 36 ~~~~~l~~~~~~l~~~~~~e~Gk~ 59 (100)
.|-+.|+.|+..|...+..-.|-|
T Consensus 10 SFf~vLdrHRasLlaal~~gggE~ 33 (43)
T PF03533_consen 10 SFFEVLDRHRASLLAALRRGGGEP 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCC
Confidence 467888999999998887766654
No 180
>PRK10236 hypothetical protein; Provisional
Probab=35.68 E-value=85 Score=21.32 Aligned_cols=21 Identities=10% Similarity=0.501 Sum_probs=18.3
Q ss_pred ccccCCHHHHHHHHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELI 41 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l 41 (100)
.|.++|.++|.++..++...+
T Consensus 125 a~~kms~eE~~~L~~~l~~~l 145 (237)
T PRK10236 125 TWKKMDEEHKQEFLHAVDARV 145 (237)
T ss_pred HHHHCCHHHHHHHHHHHhhhc
Confidence 799999999999998887764
No 181
>PF01110 CNTF: Ciliary neurotrophic factor; InterPro: IPR000151 Ciliary neurotrophic factor (CNTF) is a member of the gp130 family of cytokines. CNTF is a survival factor for various neuronal cell types and seems to prevent the degeneration of motor axons after axotomy suggesting it may be a potential therapeutic for treating neurodegeneration and nerve injury. CNTF acts on oligodendrocytes by favoring their final maturation, and this effect is mediated through the 130 kDa glycoprotein receptor common to the CNTF family and transduced through the Janus kinase pathway. The functional receptor complex of CNTF is composed of the CNTF receptor alpha (CNTFR), gp130 and the leukemia inhibitory factor receptor (LIFR). The structure of CNTF is a four helical bundle []. CNTF acts as a homodimer. Three regions on CNTF have been identified as binding sites for its receptors. The ligand-receptor interactions are mediated through the cytokine binding domains (CBDs) and/or the immunoglobulin-like domains of the receptors. However, in the case of CNTF, the precise nature of the protein-protein contacts in the signalling complex has not yet been resolved, but there is evidence that the membrane distal CBD (CBD1) of LIFR associates in vitro with soluble CNTFR in the absence of CNTF [, ]. ; GO: 0040007 growth, 0005737 cytoplasm; PDB: 1CNT_3.
Probab=34.64 E-value=1.4e+02 Score=19.77 Aligned_cols=38 Identities=8% Similarity=-0.020 Sum_probs=23.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGK 58 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk 58 (100)
.|+.++-.+|...+......+.-....+.+..-...|-
T Consensus 63 ~Wselt~aeRL~~n~~AyR~F~~LL~~vlE~qr~~l~p 100 (199)
T PF01110_consen 63 RWSELTEAERLQENLSAYRAFHVLLARVLEDQREQLTP 100 (199)
T ss_dssp --TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTST
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 79999999999988887766666555665544444443
No 182
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=34.33 E-value=1.5e+02 Score=20.12 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHhcCCCccc---cCCHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHc
Q psy13780 2 SADVDKAVESAKAAFKRGSVWR---NLDASGRGKLIYKLAELIDKN-VDYLASLETLDN 56 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~---~~~~~~R~~~L~~~~~~l~~~-~~~l~~~~~~e~ 56 (100)
..-|...+..|+...+ ... ..+.++-.+++.+|.+.+... .+.|..++..|.
T Consensus 138 ~~tVr~~l~RAr~~Lr---~~~~~~~~~~~~~~~~~~~f~~a~~~gD~~~l~~lL~~dv 193 (281)
T TIGR02957 138 EANCRQLVSRARRHLD---ARRPRFEVSREESRQLLERFVEAAQTGDLDGLLELLAEDV 193 (281)
T ss_pred HHHHHHHHHHHHHHHH---hhCCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHhhce
Confidence 3456667777777665 332 245566678999999999876 888888988875
No 183
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=33.74 E-value=99 Score=17.85 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCCcccc---CCHHHHHHHHHHHHHHHHHh
Q psy13780 7 KAVESAKAAFKRGSVWRN---LDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 7 ~ai~~a~~a~~~~~~w~~---~~~~~R~~~L~~~~~~l~~~ 44 (100)
.++++.+.|-..| .|.+ ++.++|...|+.+..+-..|
T Consensus 11 evY~rL~~AVElG-KWpDG~~LT~eQre~~mQaVm~yq~~~ 50 (93)
T PF07023_consen 11 EVYERLKQAVELG-KWPDGRALTPEQRESCMQAVMLYQARH 50 (93)
T ss_pred HHHHHHHHHHHhC-cCCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 3455555555433 7865 89999999998877665555
No 184
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=33.30 E-value=57 Score=14.98 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcC
Q psy13780 32 KLIYKLAELIDKNVDYLASLETLDNG 57 (100)
Q Consensus 32 ~~L~~~~~~l~~~~~~l~~~~~~e~G 57 (100)
.+|..+-+.|+.+.++++.--..-.|
T Consensus 7 ~lLDeId~vLe~NAe~FV~~fVQKGG 32 (33)
T TIGR03687 7 DLLDEIDGVLESNAEEFVRGFVQKGG 32 (33)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHccC
Confidence 46777888888888888876554433
No 185
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=33.17 E-value=87 Score=17.09 Aligned_cols=35 Identities=9% Similarity=-0.068 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHh
Q psy13780 45 VDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAG 79 (100)
Q Consensus 45 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~ 79 (100)
+.+|+..++..+|.+..++..-+....+.+.....
T Consensus 3 k~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~ 37 (90)
T smart00411 3 KSELIDAIAEKAGLSKKDAKAAVDAFLEIITEALK 37 (90)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 57888899999999887776555555555544433
No 186
>TIGR02664 nitr_red_assoc conserved hypothetical protein. Most members of this protein family are found in the Cyanobacteria, and these mostly near nitrate reductase genes and molybdopterin biosynthesis genes. We note that molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. This protein is sometimes annotated as nitrate reductase-associated protein. Its function is unknown.
Probab=32.33 E-value=65 Score=20.17 Aligned_cols=40 Identities=30% Similarity=0.475 Sum_probs=29.1
Q ss_pred ccccCCHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHcCCCh
Q psy13780 21 VWRNLDASGRGKLIYK---LAELIDKNVDYLASLETLDNGKPY 60 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~---~~~~l~~~~~~l~~~~~~e~Gk~~ 60 (100)
.|..+|.++|..+..- -.+.+..+++-|..++..-+|.|.
T Consensus 34 hW~~ls~~eRq~Lv~~pc~t~~e~~~yr~~L~~l~~~~a~~~~ 76 (145)
T TIGR02664 34 HWQQLTQAEREELVRLPCDTAEVIDPYREYLRDLLRTHADTPP 76 (145)
T ss_pred HHhhCCHHHHHHHHhCccCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 6999999999988543 234566777777777777777653
No 187
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=31.28 E-value=1e+02 Score=17.25 Aligned_cols=36 Identities=8% Similarity=-0.111 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHh
Q psy13780 44 NVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAG 79 (100)
Q Consensus 44 ~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~ 79 (100)
++.+|+..++..+|.+..++..-|....+.+.....
T Consensus 2 ~K~eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~ 37 (90)
T PRK10753 2 NKTQLIDVIADKAELSKTQAKAALESTLAAITESLK 37 (90)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356888888989998888776555555555543333
No 188
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=31.19 E-value=91 Score=16.65 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCChHHHHhhHHHHHHH
Q psy13780 45 VDYLASLETLDNGKPYEDSIFDLGCASDT 73 (100)
Q Consensus 45 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~ 73 (100)
..+|++.++.. |-|-++|+.=|...+..
T Consensus 4 ATdlAD~LVr~-GipFR~AH~iVg~~V~~ 31 (70)
T PF14698_consen 4 ATDLADYLVRK-GIPFREAHHIVGRLVRL 31 (70)
T ss_dssp HHHHHHHHHHT-TS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 46788899998 99999887545544443
No 189
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=31.05 E-value=1.4e+02 Score=18.91 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHh
Q psy13780 5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~ 44 (100)
++..+..++.-.. .+.-+++++|..+=.++-..+.+.
T Consensus 113 ~e~~v~~~~~~~q---my~lLTPEQra~l~~~~e~r~~~~ 149 (162)
T PRK12751 113 IERHVEMAKVRNQ---MYNLLTPEQKEALNKKHQERIEKL 149 (162)
T ss_pred HHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4444555554445 677799999987755554444443
No 190
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=30.59 E-value=1.1e+02 Score=17.27 Aligned_cols=36 Identities=6% Similarity=-0.181 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 45 VDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 45 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
..+|++.++..+|.+..++..-+....+.+......
T Consensus 4 k~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~~ 39 (96)
T TIGR00987 4 KAEMSEYLFDELGLSKREAKELVELFFEEIRRALEN 39 (96)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHc
Confidence 567888899999998888776555555555544443
No 191
>PHA02943 hypothetical protein; Provisional
Probab=29.79 E-value=1.3e+02 Score=19.20 Aligned_cols=47 Identities=15% Similarity=0.030 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhh
Q psy13780 36 KLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDK 83 (100)
Q Consensus 36 ~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~ 83 (100)
+..+.+.++..++.+.+ ...+++..+-.-.+..+....+|+...+++
T Consensus 4 ~~sd~v~~R~~eILE~L-k~G~~TtseIAkaLGlS~~qa~~~LyvLEr 50 (165)
T PHA02943 4 GMSDTVHTRMIKTLRLL-ADGCKTTSRIANKLGVSHSMARNALYQLAK 50 (165)
T ss_pred chhHHHHHHHHHHHHHH-hcCCccHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34577888888898888 433355554332334444455555555543
No 192
>PF13618 Gluconate_2-dh3: Gluconate 2-dehydrogenase subunit 3
Probab=28.47 E-value=1.3e+02 Score=17.66 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=13.9
Q ss_pred ccccCCHHHHHHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAE 39 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~ 39 (100)
.+..++.++|.++|..+..
T Consensus 67 ~F~~l~~~~~~~lL~~~~~ 85 (131)
T PF13618_consen 67 SFAELSPAQREALLDALEK 85 (131)
T ss_pred ChhhCCHHHHHHHHHHHHh
Confidence 6777888888877776654
No 193
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=28.44 E-value=1.2e+02 Score=17.13 Aligned_cols=70 Identities=9% Similarity=0.182 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHH--------HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHH--HhhHHHHH
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDAS--------GRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS--IFDLGCAS 71 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~--------~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a--~~ev~~~~ 71 (100)
.+||...+..+...|. .|..+... .-..-|.....-++...++|-..+..-..-|-... ..||..-.
T Consensus 7 ~~ev~~sl~~l~~~~~---~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr 83 (97)
T PF09177_consen 7 KDEVQSSLDRLESLYR---RWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRR 83 (97)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHH
Confidence 4689999999999998 89775433 22444555666667777777766655333343321 12454444
Q ss_pred HHH
Q psy13780 72 DTF 74 (100)
Q Consensus 72 ~~~ 74 (100)
.++
T Consensus 84 ~fv 86 (97)
T PF09177_consen 84 QFV 86 (97)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 194
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=28.26 E-value=1.4e+02 Score=17.83 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=17.8
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASLE 52 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~ 52 (100)
.|+.+|.++|..+|.-+...+.....-+.+++
T Consensus 95 ~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~ 126 (135)
T PRK09706 95 LFDALPESEQDAQLSEMRARVENFNKLFEELL 126 (135)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777776666655555444444444433
No 195
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=28.23 E-value=1.1e+02 Score=16.80 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=27.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHcCC
Q psy13780 24 NLDASGRGKLIYKLAELIDKNV---------DYLASLETLDNGK 58 (100)
Q Consensus 24 ~~~~~~R~~~L~~~~~~l~~~~---------~~l~~~~~~e~Gk 58 (100)
.++.++|..++.++..++.+.. +.|...++.+.|-
T Consensus 2 ~l~ke~k~~li~~iq~yf~~E~d~eiG~~~Ae~LLDF~~~elGp 45 (76)
T PF09932_consen 2 KLSKEEKAELIDKIQRYFAEELDEEIGDFEAEFLLDFFIEELGP 45 (76)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCcHHHhHHHHHHHHHHHHHhH
Confidence 4688999999999999988764 3456667777773
No 196
>PRK05287 hypothetical protein; Provisional
Probab=28.12 E-value=1.7e+02 Score=20.04 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=32.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHcCCChH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASL--ETLDNGKPYE 61 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~--~~~e~Gk~~~ 61 (100)
.|-..|.+.|..-+..|..-|..-.+.+.-+ +.+++|.+..
T Consensus 141 ~Wl~~p~~~R~~dl~~W~~~l~pl~~al~l~L~LlR~sg~~~~ 183 (250)
T PRK05287 141 AWLHLPQEQRQQDLQQWLAPLAPLRDALTLVLRLLRESGQFRK 183 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 5999999999999999999998877766544 4567886644
No 197
>TIGR01201 HU_rel DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe.
Probab=27.36 E-value=1.6e+02 Score=18.15 Aligned_cols=37 Identities=11% Similarity=-0.067 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 44 NVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 44 ~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
..++|++.++..+|-+..++..=+....+.+......
T Consensus 32 t~~el~~~Ia~~s~~s~~dv~~vl~~l~~~i~~~L~~ 68 (145)
T TIGR01201 32 DFEEIAELIAEESSLSPGDVKGIIDRLAYVLRRELAN 68 (145)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 4678899999999988777665555555555544443
No 198
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=27.19 E-value=1.3e+02 Score=17.02 Aligned_cols=36 Identities=11% Similarity=-0.181 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 45 VDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 45 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
..+|++.++..+|.+..++..-+....+.+......
T Consensus 5 k~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~ 40 (99)
T PRK00285 5 KADLAEALFEKVGLSKREAKELVELFFEEIRDALEN 40 (99)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHc
Confidence 578888898899988887765555555555544443
No 199
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=27.13 E-value=1.1e+02 Score=16.53 Aligned_cols=35 Identities=14% Similarity=-0.047 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHh
Q psy13780 45 VDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAG 79 (100)
Q Consensus 45 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~ 79 (100)
+.+|+..++..+|.+..++..-+....+.+.....
T Consensus 3 k~eli~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~ 37 (90)
T PF00216_consen 3 KKELIKRIAEKTGLSKKDVEAVLDALFDVIKEALK 37 (90)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999998877766544444444444333
No 200
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.37 E-value=1.8e+02 Score=18.61 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=19.8
Q ss_pred cccCCHHHHHHHHHHHHHHHHHh
Q psy13780 22 WRNLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 22 w~~~~~~~R~~~L~~~~~~l~~~ 44 (100)
-.++|+.+|.++|-.++|.+.+-
T Consensus 89 ~~~~~~~~k~~~LasLaDsf~K~ 111 (165)
T PF08822_consen 89 NEDMPPQEKVELLASLADSFSKM 111 (165)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999988773
No 201
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=26.02 E-value=1.7e+02 Score=19.64 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=17.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHh
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~ 44 (100)
.|..+|.+.|..+...+.+.....
T Consensus 215 ~w~~L~~e~q~~l~~~~~~~~~~~ 238 (286)
T PF03480_consen 215 WWDSLPDEDQEALDDAADEAEARA 238 (286)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHH
Confidence 688999999999988776665444
No 202
>PRK09565 hypothetical protein; Reviewed
Probab=25.87 E-value=88 Score=23.77 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.8
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNV 45 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~ 45 (100)
.|+.+|..+|.+.+..+...|.+..
T Consensus 26 aWR~l~~~eR~~a~~E~~~fL~~~e 50 (533)
T PRK09565 26 AWRDAPERVRDRAIEEGIDYLQAHE 50 (533)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999888887643
No 203
>KOG0840|consensus
Probab=25.76 E-value=1.3e+02 Score=20.79 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=22.9
Q ss_pred HHHHHHhHHHHHHHHHHHcCCChHHHHh
Q psy13780 38 AELIDKNVDYLASLETLDNGKPYEDSIF 65 (100)
Q Consensus 38 ~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ 65 (100)
++.+..+++.|..+.+.-+|+|..+...
T Consensus 205 akE~~~~k~~l~~i~a~~Tgq~~e~i~~ 232 (275)
T KOG0840|consen 205 AKELMRIKEYLNEIYAKHTGQPLEVIEK 232 (275)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHh
Confidence 4566788889999999999999886543
No 204
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=25.15 E-value=2.1e+02 Score=20.28 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVD 46 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~ 46 (100)
.|..+|.+.|..++..+.+.-..+.+
T Consensus 246 ~w~~L~~e~q~il~~aa~e~~~~~~~ 271 (332)
T COG1638 246 FWDSLPEEDQTILLEAAKEAAEEQRK 271 (332)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999998887666555544
No 205
>KOG0381|consensus
Probab=24.59 E-value=1.4e+02 Score=16.50 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=23.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLA 49 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~ 49 (100)
.|..++.+++..+..+....-..+..+|.
T Consensus 60 ~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~ 88 (96)
T KOG0381|consen 60 MWKNLAEEEKQPYEEKASKLKEKYEKELA 88 (96)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999987777777777777766
No 206
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=24.45 E-value=1.6e+02 Score=17.41 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHH
Q psy13780 25 LDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62 (100)
Q Consensus 25 ~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~ 62 (100)
.....=...|...++...++.+++++-+..-.|.|...
T Consensus 27 ~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~ 64 (139)
T cd01043 27 PNFFALHELFEELYDELREAIDEIAERIRALGGKPLGT 64 (139)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 45566677899999999999999999998888888653
No 207
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=23.58 E-value=1.1e+02 Score=15.10 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHcCCC
Q psy13780 24 NLDASGRGKLIYKLAELIDKN-----VDYLASLETLDNGKP 59 (100)
Q Consensus 24 ~~~~~~R~~~L~~~~~~l~~~-----~~~l~~~~~~e~Gk~ 59 (100)
-.+++.|.+.+.++...|..- ++.+..-++..+|-+
T Consensus 15 l~~~egk~~~~~~~~~~i~~i~~~i~r~~y~~~la~~~~i~ 55 (59)
T PF10410_consen 15 LDTPEGKAEAVREAAPLIAQIPDPIERELYIRELAERLGIS 55 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHCT-S
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCcC
Confidence 458899999999988888776 444455555555543
No 208
>PF07072 DUF1342: Protein of unknown function (DUF1342); InterPro: IPR009777 This family consists of several hypothetical bacterial proteins of around 250 residues in length. Members of this family are often known as YacF after the Escherichia coli protein P36680 from SWISSPROT. The function of this family is unknown.; PDB: 2OEZ_A.
Probab=23.31 E-value=1.4e+02 Score=19.78 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=26.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHcCCCh
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASL--ETLDNGKPY 60 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~--~~~e~Gk~~ 60 (100)
-|-..|.++|...|..|..-|..-.+.+.-+ +.++.|.+.
T Consensus 124 ~Wl~qp~~~R~~~l~~W~~~l~pl~~ai~liL~llR~s~~~~ 165 (211)
T PF07072_consen 124 YWLHQPPEQRQQDLQQWLEPLAPLRDAITLILRLLRESGQFS 165 (211)
T ss_dssp HHHTS-HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHC---E
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 5989999999999999988777665544433 345666543
No 209
>COG3372 Predicted nuclease of restriction endonuclease-like fold [General function prediction only]
Probab=23.14 E-value=1.6e+02 Score=21.67 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=31.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNG 57 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~G 57 (100)
....++..+|..+|...++.+.--.+++-+++..+.-
T Consensus 94 ~g~~~s~eer~~vl~~aA~~fsvs~eeie~alyaDle 130 (396)
T COG3372 94 RGPALSEEERQRVLQEAADHFSVSPEEIEDALYADLE 130 (396)
T ss_pred cCCCCChHHHHHHHHHHHHHhCCCHHHHHHHHHhccc
Confidence 4467899999999999999999988888888887654
No 210
>PF05626 DUF790: Protein of unknown function (DUF790); InterPro: IPR008508 This family consists of several hypothetical bacterial and archaeal proteins whose functions have not been experimentally verified. Computational analysis of sequence, predicted structure and genomic context suggests that these proteins may be endonucleases involved in either restriction-modification and/or DNA excision repair [].
Probab=23.08 E-value=1.3e+02 Score=21.98 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=33.0
Q ss_pred HHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q psy13780 14 AAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNG 57 (100)
Q Consensus 14 ~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~G 57 (100)
..|. ....+++.+|..+|..+++.+.---+++...+..|.-
T Consensus 90 ~vF~---~~~~~~~~eR~~~L~~vA~~L~v~~~e~e~~LyaDle 130 (379)
T PF05626_consen 90 EVFE---AGPVLSPEERQEVLEEVAEELGVSPEEVERALYADLE 130 (379)
T ss_pred HHHh---cCCCCCchhHHHHHHHHHHHcCCCHHHHHHHHhhcCh
Confidence 3565 5456789999999999999998878888888888763
No 211
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=23.05 E-value=1.2e+02 Score=18.75 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCCccccCCHHHHHHHH
Q psy13780 5 VDKAVESAKAAFKRGSVWRNLDASGRGKLI 34 (100)
Q Consensus 5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L 34 (100)
....+.+.++-.++ .|..||.+|+..+-
T Consensus 29 ~~~~~~~LkeKekg--~Wk~LS~eEKkalY 56 (142)
T PF02936_consen 29 QTEIIEALKEKEKG--DWKKLSLEEKKALY 56 (142)
T ss_dssp --HHHHHHHHHTTS---GGGS-HHHHHHHH
T ss_pred hHHHHHHHHHHHhC--CHhhCCHHHHHHHH
Confidence 34556667777763 89999999887763
No 212
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=22.83 E-value=2.2e+02 Score=18.28 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHh
Q psy13780 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 3 ~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~ 44 (100)
..++.+|+.++.-.. ...-++|+++..+=...-..+.+.
T Consensus 105 ~~~e~~Vem~k~~nq---my~lLTPEQKaq~~~~~~~rm~~~ 143 (166)
T PRK10363 105 EQVARQVEMAKVRNQ---MYRLLTPEQQAVLNEKHQQRMEQL 143 (166)
T ss_pred HHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHH
Confidence 457778888877666 777889999887755554444444
No 213
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=22.71 E-value=1.7e+02 Score=16.88 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHH
Q psy13780 24 NLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62 (100)
Q Consensus 24 ~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~ 62 (100)
......=.+.+...++...+|.+.+++.+..-.|.|...
T Consensus 27 ~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~ 65 (142)
T PF00210_consen 27 GPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGS 65 (142)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTS
T ss_pred CCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 345555667899999999999999999998877766543
No 214
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=22.55 E-value=2e+02 Score=18.11 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=31.8
Q ss_pred ccccCCHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHcCCChH
Q psy13780 21 VWRNLDASGRG--KLIYKLAELIDKNVDYLASLETLDNGKPYE 61 (100)
Q Consensus 21 ~w~~~~~~~R~--~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~ 61 (100)
.|--..+..+. +.+..+.+.+.++.|++++-+..=.|.|+.
T Consensus 38 HWnV~G~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~ 80 (156)
T COG0783 38 HWNVKGPNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLG 80 (156)
T ss_pred ccceeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 47655666665 458889999999999999988877777753
No 215
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=22.28 E-value=1.6e+02 Score=16.67 Aligned_cols=21 Identities=5% Similarity=0.159 Sum_probs=17.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHh
Q psy13780 24 NLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 24 ~~~~~~R~~~L~~~~~~l~~~ 44 (100)
..|.++++.+++.+.+.+..+
T Consensus 14 ~~SLKeKR~vvksl~~klr~r 34 (90)
T PF04456_consen 14 AHSLKEKRQVVKSLIDKLRNR 34 (90)
T ss_dssp -SSHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHHHHHHHhh
Confidence 358999999999999998876
No 216
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=21.63 E-value=2.7e+02 Score=20.82 Aligned_cols=34 Identities=15% Similarity=0.344 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHh
Q psy13780 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~ 44 (100)
|++...++-.+|.. ||.++|+....++.+.+..+
T Consensus 426 d~~~~A~ai~~AL~-------M~~~Er~~r~~~~~~~v~~~ 459 (474)
T PF00982_consen 426 DIEEVADAIHEALT-------MPPEERKERHARLREYVREH 459 (474)
T ss_dssp -HHHHHHHHHHHHT---------HHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHhHhC
Confidence 34444444555553 89999999999999988876
No 217
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=21.43 E-value=2.9e+02 Score=19.19 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=35.6
Q ss_pred cccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHH
Q psy13780 22 WRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLG 68 (100)
Q Consensus 22 w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~ 68 (100)
.++.+..+|.+.+..+.... ..+.|.++.+...|++..++.-++.
T Consensus 82 lkrV~~~q~~~k~~~wk~~q--ka~klle~aaekl~~~~ee~~~~vg 126 (269)
T COG1093 82 LKRVTEHQRRKKIQEWKKEQ--KADKLLELAAEKLGKDLEEAYEEVG 126 (269)
T ss_pred hhhCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 45678899999999998764 4567888899999999988764443
No 218
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=21.25 E-value=87 Score=16.82 Aligned_cols=20 Identities=25% Similarity=0.611 Sum_probs=16.7
Q ss_pred ccccCCHHHHHHHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAEL 40 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~ 40 (100)
.|.+.+..+|-+++..+...
T Consensus 45 ~W~~~~~~ek~~m~~~l~~~ 64 (65)
T PF14098_consen 45 IWKNSDESEKQEMVNTLEQG 64 (65)
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 49999999999998887653
No 219
>PF11647 PMT_C: C-terminal region of Pasteurella multocida toxin residues 569-1285; InterPro: IPR020972 This entry represents the C-terminal domain of Pasteurella multocida toxin (PMT) which displays a Trojan horse-like shape with three domains, C1, C2 and C3. The C3 domain possesses the Cys-His-Asp catalytic triad. PMT is an enzyme toxin carrying the cysteine protease-like catalytic triad which functions on the cytoplasmic face of the plasma membrane of target cells []. This entry is also found in the Vibrio cholerae RTX toxin [], a bacterial toxin that self-process by a cysteine peptidase mechanism. These cysteine peptidases belong to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). ; PDB: 4ERR_A 2EC5_B 2EBH_X 2EBF_X.
Probab=21.10 E-value=1.5e+02 Score=15.83 Aligned_cols=29 Identities=17% Similarity=-0.027 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCChHHHHhhHHHHHHHHH
Q psy13780 46 DYLASLETLDNGKPYEDSIFDLGCASDTFR 75 (100)
Q Consensus 46 ~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~ 75 (100)
++|.+. ..-+|||+.++...|......+.
T Consensus 3 ~eL~~~-a~v~Gk~iGESy~~Il~kl~~i~ 31 (66)
T PF11647_consen 3 DELKKA-AKVFGKVIGESYQSILSKLFLIH 31 (66)
T ss_dssp HHHHHH-CHCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCcccCccHHHHHHHHHHHH
Confidence 344444 56689999998765554444443
No 220
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=21.07 E-value=1.6e+02 Score=15.96 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHhcCCCccc-cCCHHHHHHHHHHHHHHHHHhHHHHH
Q psy13780 2 SADVDKAVESAKAAFKRGSVWR-NLDASGRGKLIYKLAELIDKNVDYLA 49 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~-~~~~~~R~~~L~~~~~~l~~~~~~l~ 49 (100)
.+++-+.+..-..+|+ .|. +....+-...+.-+.+.|.+.--+.+
T Consensus 3 k~E~~~ll~~I~~aYP---~~~~~f~~~~~k~~v~~W~~~L~d~~ye~v 48 (71)
T PF11417_consen 3 KEETAKLLKLIKAAYP---QWAGNFKPTDSKETVDLWYDMLKDYDYEIV 48 (71)
T ss_dssp HHHHHHHHHHHHHHST------TT---STHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHHHHHHCC---cchhccchhhHHHHHHHHHHHHHhCCHHHH
Confidence 5677788888888999 885 45666666778888888877644433
No 221
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=20.50 E-value=1.5e+02 Score=16.12 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy13780 25 LDASGRGKLIYKLAELIDK 43 (100)
Q Consensus 25 ~~~~~R~~~L~~~~~~l~~ 43 (100)
.+..+|.++|.++.+.++.
T Consensus 35 ~~~~e~e~~l~~Ii~~v~k 53 (73)
T PF12213_consen 35 LSEEEREDWLDKIIDAVQK 53 (73)
T ss_dssp S-TTTHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4555666666666665544
No 222
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=20.34 E-value=2.6e+02 Score=18.77 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH
Q psy13780 31 GKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI 64 (100)
Q Consensus 31 ~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~ 64 (100)
+.-+..-++.|...++.+..+.+..+|+|..+-.
T Consensus 155 A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~ 188 (222)
T PRK12552 155 ATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLS 188 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3445666677888888999999999999987543
No 223
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=20.07 E-value=1.5e+02 Score=15.38 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=19.6
Q ss_pred HHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHH
Q psy13780 42 DKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRY 76 (100)
Q Consensus 42 ~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~ 76 (100)
.++.-.|++-+....|.++..+...-..+....+|
T Consensus 18 ~~Rl~~l~~~la~~p~~Sip~a~~~wa~tkaAYRF 52 (58)
T PF14706_consen 18 TRRLVKLAESLAEKPGASIPQACQDWAETKAAYRF 52 (58)
T ss_dssp HHHHHHHHHHHHHTTTS-HHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCccchhccCHHHHHHHHHh
Confidence 34444556667888999998876533333333333
No 224
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=20.02 E-value=3e+02 Score=18.72 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhcCCCccc---cCCHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHc
Q psy13780 3 ADVDKAVESAKAAFKRGSVWR---NLDASGRGKLIYKLAELIDKN-VDYLASLETLDN 56 (100)
Q Consensus 3 ~~v~~ai~~a~~a~~~~~~w~---~~~~~~R~~~L~~~~~~l~~~-~~~l~~~~~~e~ 56 (100)
.-|...+..|+...+ ... ..+.+.-.+++.+|...+... .+.|..++..|.
T Consensus 146 ~tVk~~l~RAr~~Lr---~~~~~~~~~~~~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv 200 (293)
T PRK09636 146 AACRQLASRARKHVR---AARPRFPVSDEEGAELVEAFFAALASGDLDALVALLAPDV 200 (293)
T ss_pred HHHHHHHHHHHHHHH---hhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHhhCe
Confidence 446666777777765 332 256677788999999999885 888888888765
Done!