Query psy13780
Match_columns 100
No_of_seqs 158 out of 1214
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 20:20:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wme_A BADH, betaine aldehyde 99.7 4.7E-17 1.6E-21 116.3 9.2 86 1-89 42-128 (490)
2 3rh9_A Succinate-semialdehyde 99.7 9.8E-16 3.4E-20 109.9 12.0 87 1-90 47-133 (506)
3 3ifg_A Succinate-semialdehyde 99.7 5.3E-16 1.8E-20 110.7 10.5 85 1-88 48-132 (484)
4 3ed6_A Betaine aldehyde dehydr 99.7 6.8E-16 2.3E-20 111.0 10.9 86 1-89 68-155 (520)
5 3ros_A NAD-dependent aldehyde 99.7 7.2E-16 2.4E-20 110.1 10.4 86 1-89 24-109 (484)
6 3pqa_A Lactaldehyde dehydrogen 99.7 6.5E-16 2.2E-20 110.3 10.1 87 1-90 32-118 (486)
7 2imp_A Lactaldehyde dehydrogen 99.7 9.1E-16 3.1E-20 109.3 10.7 86 1-89 42-127 (479)
8 3ek1_A Aldehyde dehydrogenase; 99.7 7.5E-16 2.6E-20 110.4 10.2 85 1-88 68-152 (504)
9 1uzb_A 1-pyrroline-5-carboxyla 99.7 1.2E-15 4.1E-20 109.6 11.2 85 1-88 72-156 (516)
10 4f3x_A Putative aldehyde dehyd 99.7 6.2E-16 2.1E-20 110.7 9.6 84 1-87 60-144 (498)
11 1a4s_A ALDH, betaine aldehyde 99.7 8.7E-16 3E-20 110.0 10.2 85 1-88 56-140 (503)
12 3prl_A NADP-dependent glyceral 99.6 7.8E-16 2.7E-20 110.3 9.8 85 1-88 47-131 (505)
13 3k2w_A Betaine-aldehyde dehydr 99.6 1.1E-15 3.6E-20 109.5 10.1 86 1-89 48-133 (497)
14 2w8n_A Succinate-semialdehyde 99.6 1.9E-15 6.6E-20 107.9 11.4 85 1-88 46-130 (487)
15 2d4e_A 5-carboxymethyl-2-hydro 99.6 1.7E-15 6E-20 108.8 11.0 85 1-88 62-146 (515)
16 3u4j_A NAD-dependent aldehyde 99.6 1.9E-15 6.6E-20 108.8 11.1 87 1-90 59-147 (528)
17 2o2p_A Formyltetrahydrofolate 99.6 1.7E-15 5.7E-20 108.9 10.7 88 1-89 72-160 (517)
18 2j6l_A Aldehyde dehydrogenase 99.6 2.5E-15 8.5E-20 107.6 11.3 85 1-88 57-141 (500)
19 3qan_A 1-pyrroline-5-carboxyla 99.6 2.6E-15 9E-20 108.3 11.4 85 1-88 72-157 (538)
20 1wnd_A Putative betaine aldehy 99.6 1.4E-15 4.8E-20 108.8 9.7 85 1-88 58-143 (495)
21 1euh_A NADP dependent non phos 99.6 1.5E-15 5E-20 108.2 9.3 85 1-88 38-122 (475)
22 3lns_A Benzaldehyde dehydrogen 99.6 4.1E-15 1.4E-19 105.5 11.2 84 1-87 26-110 (457)
23 3jz4_A Succinate-semialdehyde 99.6 3.5E-15 1.2E-19 106.4 10.5 85 1-88 45-129 (481)
24 1ez0_A ALDH, aldehyde dehydrog 99.6 4.3E-15 1.5E-19 106.6 11.0 84 1-87 28-113 (510)
25 3etf_A Putative succinate-semi 99.6 4.2E-15 1.4E-19 105.5 10.8 85 1-88 27-111 (462)
26 4dng_A Uncharacterized aldehyd 99.6 5.5E-15 1.9E-19 105.5 11.1 85 1-88 42-126 (485)
27 4e3x_A Delta-1-pyrroline-5-car 99.6 3.6E-15 1.2E-19 108.1 10.2 85 1-88 98-184 (563)
28 3b4w_A Aldehyde dehydrogenase; 99.6 4.7E-15 1.6E-19 106.1 10.3 87 1-88 44-131 (495)
29 3v4c_A Aldehyde dehydrogenase 99.6 6.2E-15 2.1E-19 106.1 10.9 80 1-83 61-140 (528)
30 4f9i_A Proline dehydrogenase/d 99.6 6E-15 2E-19 112.6 11.3 85 1-88 566-650 (1026)
31 4e4g_A Methylmalonate-semialde 99.6 4.5E-15 1.5E-19 106.8 10.1 83 1-86 62-144 (521)
32 3ju8_A Succinylglutamic semial 99.6 4.9E-15 1.7E-19 105.8 10.2 85 1-88 40-124 (490)
33 3sza_A Aldehyde dehydrogenase, 99.6 7.1E-15 2.4E-19 104.6 10.7 84 1-87 16-100 (469)
34 3i44_A Aldehyde dehydrogenase; 99.6 6.4E-15 2.2E-19 105.5 10.5 83 1-86 61-144 (497)
35 1t90_A MMSDH, probable methylm 99.6 4.3E-15 1.5E-19 106.1 9.4 83 1-86 41-123 (486)
36 3iwj_A Putative aminoaldehyde 99.6 6E-15 2.1E-19 105.7 10.0 87 1-87 43-131 (503)
37 1bxs_A Aldehyde dehydrogenase; 99.6 1.1E-14 3.9E-19 104.2 10.7 88 1-88 56-144 (501)
38 2ve5_A BADH, betaine aldehyde 99.6 6.8E-15 2.3E-19 105.1 9.2 84 1-87 42-126 (490)
39 3r64_A NAD dependent benzaldeh 99.6 7.5E-15 2.6E-19 105.3 9.5 83 1-86 48-130 (508)
40 3ty7_A Putative aldehyde dehyd 99.6 1.3E-14 4.5E-19 103.4 10.3 84 1-87 43-127 (478)
41 4h7n_A Aldehyde dehydrogenase; 99.6 8.1E-15 2.8E-19 104.4 9.1 83 1-87 26-108 (474)
42 3r31_A BADH, betaine aldehyde 99.6 8.3E-15 2.8E-19 105.3 9.2 78 1-83 50-127 (517)
43 1o04_A Aldehyde dehydrogenase, 99.6 1.4E-14 4.9E-19 103.7 10.4 88 1-88 55-143 (500)
44 1uxt_A Glyceraldehyde-3-phosph 99.6 1.4E-14 4.9E-19 103.7 9.5 86 1-88 52-137 (501)
45 3haz_A Proline dehydrogenase; 99.6 2.6E-14 8.7E-19 108.9 10.8 84 1-87 548-631 (1001)
46 2y53_A Aldehyde dehydrogenase 99.5 2.2E-14 7.5E-19 103.4 8.7 80 3-85 43-123 (534)
47 2h5g_A Delta 1-pyrroline-5-car 99.5 2.7E-14 9.4E-19 101.5 6.3 84 2-88 28-122 (463)
48 1o20_A Gamma-glutamyl phosphat 99.4 5.8E-13 2E-17 93.8 7.0 79 2-83 13-103 (427)
49 3my7_A Alcohol dehydrogenase/a 99.4 2.2E-12 7.5E-17 91.4 9.7 75 1-78 5-81 (452)
50 1vlu_A Gamma-glutamyl phosphat 99.4 3.9E-13 1.3E-17 95.7 4.4 79 4-85 15-99 (468)
51 4ghk_A Gamma-glutamyl phosphat 99.3 3.7E-12 1.3E-16 90.1 7.6 78 2-82 25-114 (444)
52 3k9d_A LMO1179 protein, aldehy 99.3 9.4E-12 3.2E-16 88.4 9.4 75 2-79 11-86 (464)
53 1use_A VAsp, vasodilator-stimu 81.9 2.1 7.2E-05 20.5 3.1 30 29-58 12-41 (45)
54 3fgh_A Transcription factor A, 74.4 6.6 0.00023 19.7 4.7 36 12-50 30-65 (67)
55 2eqz_A High mobility group pro 71.8 9.3 0.00032 20.3 4.7 36 12-50 49-84 (86)
56 1v63_A Nucleolar transcription 68.7 13 0.00043 20.6 4.8 38 12-52 38-75 (101)
57 2qgu_A Probable signal peptide 67.7 5.2 0.00018 25.3 3.2 23 21-43 85-107 (211)
58 1gt0_D Transcription factor SO 65.2 11 0.00036 19.7 3.7 28 21-48 40-67 (80)
59 1hry_A Human SRY; DNA, DNA-bin 64.9 11 0.00036 19.4 3.7 27 21-47 42-68 (76)
60 2co9_A Thymus high mobility gr 63.5 16 0.00056 20.0 5.1 36 21-56 55-90 (102)
61 1v64_A Nucleolar transcription 63.0 17 0.00057 20.4 4.4 32 21-52 51-82 (108)
62 2crj_A SWI/SNF-related matrix- 62.3 12 0.00041 20.1 3.7 30 21-50 45-74 (92)
63 3u2b_C Transcription factor SO 62.3 11 0.00037 19.5 3.4 27 21-47 40-66 (79)
64 2l2l_A Transcriptional repress 61.0 12 0.0004 17.5 4.3 25 26-50 2-26 (43)
65 3f27_D Transcription factor SO 59.1 13 0.00044 19.5 3.3 28 21-48 44-71 (83)
66 1j46_A SRY, sex-determining re 59.0 16 0.00053 19.3 3.7 28 21-48 42-69 (85)
67 1hme_A High mobility group pro 58.7 8 0.00027 20.0 2.4 28 21-48 44-71 (77)
68 2lef_A LEF-1 HMG, protein (lym 58.1 17 0.00059 19.2 3.8 28 21-48 40-67 (86)
69 4a3n_A Transcription factor SO 56.3 8.8 0.0003 19.3 2.3 26 21-46 40-65 (71)
70 2ke4_A CDC42-interacting prote 55.5 19 0.00065 20.1 3.7 24 21-44 7-30 (98)
71 2cs1_A PMS1 protein homolog 1; 54.8 15 0.0005 19.8 3.2 31 21-51 45-75 (92)
72 4euw_A Transcription factor SO 54.8 19 0.00064 20.0 3.7 28 21-48 67-94 (106)
73 1ckt_A High mobility group 1 p 54.6 9.7 0.00033 19.2 2.3 28 21-48 41-68 (71)
74 2e6o_A HMG box-containing prot 54.6 22 0.00077 18.8 3.9 26 21-46 55-80 (87)
75 1aab_A High mobility group pro 52.7 12 0.00042 19.6 2.6 29 21-49 47-75 (83)
76 2l3i_A Aoxki4A, antimicrobial 49.4 15 0.00052 15.3 2.3 22 21-44 7-28 (30)
77 2gzk_A Sex-determining region 47.8 37 0.0013 20.0 4.4 30 21-50 126-155 (159)
78 3bqs_A Uncharacterized protein 45.1 37 0.0013 18.6 4.1 30 7-40 56-85 (93)
79 2jr2_A UPF0352 protein CPS_261 44.2 35 0.0012 18.1 3.8 22 24-45 47-68 (76)
80 1cg7_A Protein (NON histone pr 43.3 13 0.00046 20.0 1.8 31 21-51 58-88 (93)
81 1k99_A Upstream binding factor 42.7 21 0.00071 19.5 2.6 30 21-50 48-77 (99)
82 2jpq_A UPF0352 protein VP2129; 41.8 35 0.0012 18.4 3.2 21 23-43 47-67 (83)
83 2juw_A UPF0352 protein SO_2176 41.7 35 0.0012 18.3 3.2 22 23-44 47-68 (80)
84 3tq6_A Transcription factor A, 38.7 65 0.0022 20.2 4.7 33 21-53 148-180 (214)
85 1t0t_V APC35880; pentamer, ico 37.8 26 0.00089 22.9 2.8 25 21-45 24-48 (248)
86 1wz6_A HMG-box transcription f 37.4 45 0.0015 17.2 3.7 25 21-45 45-69 (82)
87 1cnt_1 CNTF, ciliary neurotrop 37.1 76 0.0026 19.8 8.9 33 21-53 63-95 (187)
88 3rhi_A DNA-binding protein HU; 35.8 53 0.0018 17.6 3.8 35 45-79 6-40 (93)
89 1l8y_A Upstream binding factor 35.7 51 0.0017 18.0 3.4 30 21-50 41-70 (91)
90 1vdh_A Muconolactone isomerase 35.6 30 0.001 22.6 2.8 24 21-44 28-51 (249)
91 1mul_A NS2, HU-2, DNA binding 34.6 54 0.0018 17.4 4.9 36 45-80 3-38 (90)
92 1b8z_A Protein (histonelike pr 33.8 56 0.0019 17.3 4.7 36 45-80 3-38 (90)
93 2yuk_A Myeloid/lymphoid or mix 32.6 49 0.0017 18.0 3.0 25 21-45 58-82 (90)
94 1p71_A DNA-binding protein HU; 32.5 61 0.0021 17.3 4.7 36 45-80 3-38 (94)
95 1i11_A Transcription factor SO 32.4 23 0.00079 18.4 1.6 25 21-45 42-66 (81)
96 3nn1_A Chlorite dismutase; fer 31.7 41 0.0014 21.9 2.9 26 21-46 27-52 (241)
97 2o97_B NS1, HU-1, DNA-binding 31.5 62 0.0021 17.1 4.6 36 45-80 3-38 (90)
98 3c4i_A DNA-binding protein HU 31.3 66 0.0023 17.4 4.7 36 45-80 3-38 (99)
99 2yrq_A High mobility group pro 30.7 60 0.002 19.4 3.5 30 21-50 139-168 (173)
100 2lhj_A High mobility group pro 29.7 24 0.00081 19.1 1.4 31 21-51 62-92 (97)
101 4fxi_A MRNA interferase RELE; 29.6 44 0.0015 18.2 2.5 24 14-40 10-33 (95)
102 1owf_A IHF-alpha, integration 29.0 73 0.0025 17.2 4.7 37 44-80 4-40 (99)
103 4gm2_A ATP-dependent CLP prote 29.0 93 0.0032 19.6 4.2 31 34-64 148-178 (205)
104 1nlw_A MAD protein, MAX dimeri 28.1 72 0.0025 16.8 4.6 47 3-52 14-60 (80)
105 2gfu_A DNA mismatch repair pro 28.0 51 0.0017 19.1 2.7 24 3-33 103-126 (134)
106 2juz_A UPF0352 protein HI0840; 27.7 36 0.0012 18.3 1.7 22 23-44 47-68 (80)
107 4dnd_A Syntaxin-10, SYN10; str 27.4 96 0.0033 18.0 6.3 49 2-53 33-91 (130)
108 1wgf_A Upstream binding factor 27.2 12 0.0004 20.1 -0.2 24 21-44 58-81 (90)
109 3pk1_B Apoptosis regulator BAX 26.5 51 0.0018 14.6 3.5 24 23-46 5-28 (34)
110 1exe_A Transcription factor 1; 26.0 70 0.0024 17.3 2.9 36 45-80 3-38 (99)
111 4ehp_B Catenin alpha-1; adhere 25.2 1E+02 0.0035 17.6 5.8 50 23-74 51-100 (111)
112 3bej_E Nuclear receptor coacti 24.3 49 0.0017 13.6 1.9 16 23-38 4-19 (26)
113 3itf_A Periplasmic adaptor pro 24.2 1.2E+02 0.0041 18.0 5.1 39 4-45 101-139 (145)
114 3tmm_A Transcription factor A, 24.1 1.4E+02 0.0048 19.0 4.4 38 12-52 73-110 (238)
115 3nm8_A Tyrosinase; TYPE3 coppe 24.0 1.7E+02 0.0057 19.6 5.5 31 21-51 10-41 (303)
116 2jrx_A UPF0352 protein YEJL; h 23.8 38 0.0013 18.3 1.4 20 24-43 48-67 (83)
117 2oez_A UPF0289 protein VP2528; 23.6 92 0.0032 20.3 3.5 41 21-61 142-184 (247)
118 3dtz_A Putative chlorite dismu 23.1 59 0.002 21.2 2.5 21 21-41 36-58 (244)
119 2pfx_A Uncharacterized peroxid 22.9 70 0.0024 19.2 2.8 60 21-82 113-176 (191)
120 1nkp_A C-MYC, MYC proto-oncoge 22.2 1E+02 0.0035 16.5 4.8 47 3-52 19-65 (88)
121 3c1l_A Putative antioxidant de 21.7 67 0.0023 19.2 2.5 61 21-83 110-174 (188)
122 4h5l_A Nucleoprotein; nucleoca 21.3 1.6E+02 0.0055 19.3 4.3 34 2-38 195-228 (253)
123 2prr_A Alkylhydroperoxidase AH 21.1 1E+02 0.0034 18.7 3.2 59 22-82 115-177 (197)
124 3nm9_A HMG-D, high mobility gr 21.0 85 0.0029 15.7 2.5 28 21-50 41-68 (73)
125 1srq_A RAP1GAP, GTPase-activat 20.8 1E+02 0.0034 21.1 3.4 43 6-49 293-335 (341)
126 1wi9_A Protein C20ORF116 homol 20.7 1E+02 0.0035 16.1 2.7 34 30-63 5-38 (72)
127 1owf_B IHF-beta, integration H 20.6 1.1E+02 0.0037 16.2 4.9 36 45-80 3-39 (94)
128 1u2c_A Dystroglycan; IG-like d 20.2 98 0.0033 20.2 3.1 25 22-46 140-164 (246)
No 1
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=99.71 E-value=4.7e-17 Score=116.31 Aligned_cols=86 Identities=36% Similarity=0.619 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+||+.||++|++||+ .|+++|+.+|.++|.+++++|++|+++|+++++.|+|||+.++.. ++..+++.++||+.
T Consensus 42 ~~~dv~~Av~aA~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~~v~~~~~~~~~~a~ 118 (490)
T 2wme_A 42 SREDVERAVQSAVEGQK---VWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAG 118 (490)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999 999999999999999999999999999999999999999999987 79999999999999
Q ss_pred chhhhcCccc
Q psy13780 80 WCDKIEGSTI 89 (100)
Q Consensus 80 ~~~~~~~~~~ 89 (100)
.+.++.+...
T Consensus 119 ~~~~~~~~~~ 128 (490)
T 2wme_A 119 LVPAIEGEQI 128 (490)
T ss_dssp HGGGCCEEEE
T ss_pred ccccccCccc
Confidence 9887766543
No 2
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=99.67 E-value=9.8e-16 Score=109.86 Aligned_cols=87 Identities=22% Similarity=0.379 Sum_probs=81.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|++|+++|+++++.|+|||..++..|+..+++.++|++..
T Consensus 47 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~ 123 (506)
T 3rh9_A 47 PEEDVVAAVEAGQSALR---LTNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHGKPWKEAQGEVDYAAGFFDYCAKH 123 (506)
T ss_dssp CHHHHHHHHHHHHHHCC---SSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcccC
Q psy13780 81 CDKIEGSTIP 90 (100)
Q Consensus 81 ~~~~~~~~~~ 90 (100)
+.++.+...+
T Consensus 124 ~~~~~~~~~~ 133 (506)
T 3rh9_A 124 ISALDSHTIP 133 (506)
T ss_dssp GGGGCCEECS
T ss_pred HHHhcCcccc
Confidence 9988765443
No 3
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=99.67 E-value=5.3e-16 Score=110.71 Aligned_cols=85 Identities=28% Similarity=0.443 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|+.+|.++|.+++++|++|.++|+.+++.|+|||+.++..|+..+++.++||+..
T Consensus 48 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~ 124 (484)
T 3ifg_A 48 GAAETARAIEAAQAAWA---GWRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPLAEAKGEIAYAASFIEWFAEE 124 (484)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.+..
T Consensus 125 ~~~~~g~~ 132 (484)
T 3ifg_A 125 GKRVAGDT 132 (484)
T ss_dssp HTTCCEEE
T ss_pred HHhhcCcc
Confidence 87765543
No 4
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=99.66 E-value=6.8e-16 Score=110.99 Aligned_cols=86 Identities=38% Similarity=0.587 Sum_probs=80.7
Q ss_pred ChHHHHHHHHHHHHHh--cCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAF--KRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFA 78 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~--~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a 78 (100)
+.+|++.|+++|++|| + .|+.+|..+|.++|.+++++|+++.++|+++++.|+|||+.++..|+..+++.++||+
T Consensus 68 ~~~dv~~Av~aA~~A~~~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a 144 (520)
T 3ed6_A 68 TKEDAERAILAARRAFESG---EWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA 144 (520)
T ss_dssp CHHHHHHHHHHHHHHHHHT---TTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccc---ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999 8 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhhcCccc
Q psy13780 79 GWCDKIEGSTI 89 (100)
Q Consensus 79 ~~~~~~~~~~~ 89 (100)
..+.++.+...
T Consensus 145 ~~~~~~~g~~~ 155 (520)
T 3ed6_A 145 GLADKDGGEMI 155 (520)
T ss_dssp HHTTSCCEEEE
T ss_pred HHHHHhcCeec
Confidence 99888766543
No 5
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=99.66 E-value=7.2e-16 Score=110.07 Aligned_cols=86 Identities=24% Similarity=0.402 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|.+|.++|+++++.|+|||..++..|+..++..++|++..
T Consensus 24 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~ 100 (484)
T 3ros_A 24 TSKQIDEAINLAHALYK---KWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLLSESKEEVELCVSICNYYADH 100 (484)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCccc
Q psy13780 81 CDKIEGSTI 89 (100)
Q Consensus 81 ~~~~~~~~~ 89 (100)
+.++.++..
T Consensus 101 ~~~~~~~~~ 109 (484)
T 3ros_A 101 GPEMLKPTK 109 (484)
T ss_dssp HHHHTSCEE
T ss_pred HHHhcCCee
Confidence 988877643
No 6
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=99.66 E-value=6.5e-16 Score=110.31 Aligned_cols=87 Identities=22% Similarity=0.371 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||. .|+.+|..+|.++|.+++++|++|.++|+++++.|+|||..++..|+..++..++|++..
T Consensus 32 ~~~~v~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~~~~~a~~ 108 (486)
T 3pqa_A 32 SREEAKEAIDTAEKYKE---VMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKPIKQARVEVERSIGTFKLAAFY 108 (486)
T ss_dssp CHHHHHHHHHHHHHTHH---HHHTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999989999999999999999
Q ss_pred hhhhcCcccC
Q psy13780 81 CDKIEGSTIP 90 (100)
Q Consensus 81 ~~~~~~~~~~ 90 (100)
+.++.++..+
T Consensus 109 ~~~~~~~~~~ 118 (486)
T 3pqa_A 109 VKEHRDEVIP 118 (486)
T ss_dssp HHHCCEEEEC
T ss_pred HHHhcCceec
Confidence 9888665433
No 7
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=99.66 E-value=9.1e-16 Score=109.34 Aligned_cols=86 Identities=24% Similarity=0.409 Sum_probs=80.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++++|++||+ .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++..|+..+++.++|++..
T Consensus 42 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~ 118 (479)
T 2imp_A 42 QAEDARKAIDAAERAQP---EWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEW 118 (479)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhhhcCccc
Q psy13780 81 CDKIEGSTI 89 (100)
Q Consensus 81 ~~~~~~~~~ 89 (100)
+.++.++..
T Consensus 119 ~~~~~~~~~ 127 (479)
T 2imp_A 119 ARRYEGEII 127 (479)
T ss_dssp TTTCCCEEE
T ss_pred HHHhhCCcc
Confidence 888776643
No 8
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=99.65 E-value=7.5e-16 Score=110.41 Aligned_cols=85 Identities=25% Similarity=0.374 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.||++|++||+ .|+.+|+.+|.++|.+++++|++|.++|+.+++.|+|||+.++..|+..+++.++||+..
T Consensus 68 ~~~dv~~Av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~ 144 (504)
T 3ek1_A 68 SVATIKEAIDASAKALS---GWAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPLAEARGEVLYAASFIEWFAEE 144 (504)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.+..
T Consensus 145 ~~~~~g~~ 152 (504)
T 3ek1_A 145 AKRVYGDT 152 (504)
T ss_dssp HTTCCEEE
T ss_pred HHHhcCcc
Confidence 87765543
No 9
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=99.65 E-value=1.2e-15 Score=109.61 Aligned_cols=85 Identities=25% Similarity=0.365 Sum_probs=80.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++..|+..+++.++||+..
T Consensus 72 ~~~~v~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~ 148 (516)
T 1uzb_A 72 GKAEAEAALEAAWKAFK---TWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEASADVAEAIDFIEYYARA 148 (516)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999989999999999999999
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.++.
T Consensus 149 ~~~~~~~~ 156 (516)
T 1uzb_A 149 ALRYRYPA 156 (516)
T ss_dssp HGGGCSSC
T ss_pred HHHhcCCc
Confidence 98887654
No 10
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=99.65 E-value=6.2e-16 Score=110.69 Aligned_cols=84 Identities=32% Similarity=0.537 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHH-HhhHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS-IFDLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a-~~ev~~~~~~~~~~a~ 79 (100)
+.+|++.||++|++||+ .|+.+|+.+|.++|.+++++|++|.++|+.+++.|+|||..++ ..|+..+++.++||+.
T Consensus 60 ~~~dv~~Av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~l~~~a~ 136 (498)
T 4f3x_A 60 SHAQIDAAVDAAERAFV---GWSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPINAVKNDELPAIIDCWRFFAG 136 (498)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHH
Confidence 46899999999999999 9999999999999999999999999999999999999999999 7799999999999999
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+.++.+.
T Consensus 137 ~~~~~~~~ 144 (498)
T 4f3x_A 137 AVRNLHAP 144 (498)
T ss_dssp HTTCCEEE
T ss_pred HHHHhcCc
Confidence 98876554
No 11
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=99.65 E-value=8.7e-16 Score=110.05 Aligned_cols=85 Identities=29% Similarity=0.572 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++..|+..+++.++||+..
T Consensus 56 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~ 132 (503)
T 1a4s_A 56 GAEEVDQAVQSAQAAYL---KWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITEAEYDIDAAWQCIEYYAGL 132 (503)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.+..
T Consensus 133 ~~~~~g~~ 140 (503)
T 1a4s_A 133 APTLSGQH 140 (503)
T ss_dssp GGGCCEEE
T ss_pred HHHhcCCc
Confidence 98876543
No 12
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=99.65 E-value=7.8e-16 Score=110.35 Aligned_cols=85 Identities=25% Similarity=0.400 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|++|.++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus 47 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~~~~~a~~ 123 (505)
T 3prl_A 47 SQEEVNDAIQGAKDAQK---IWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKKSAIGEVSRTADIIRHTADE 123 (505)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.+..
T Consensus 124 ~~~~~g~~ 131 (505)
T 3prl_A 124 ALRLNGET 131 (505)
T ss_dssp HHTCCEEE
T ss_pred HHHhcCcc
Confidence 88876643
No 13
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=99.65 E-value=1.1e-15 Score=109.47 Aligned_cols=86 Identities=27% Similarity=0.372 Sum_probs=81.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|++|.++|+++++.|+|||+.++..|+..++..++|++..
T Consensus 48 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 124 (497)
T 3k2w_A 48 CKADAENALEVAQAAQK---AWAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGKLLSVAEMEVDVTATFIDYGCDN 124 (497)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCccc
Q psy13780 81 CDKIEGSTI 89 (100)
Q Consensus 81 ~~~~~~~~~ 89 (100)
+.++.++..
T Consensus 125 ~~~~~~~~~ 133 (497)
T 3k2w_A 125 ALTIEGDIL 133 (497)
T ss_dssp TTTCCEEEE
T ss_pred HHHhcCccc
Confidence 988876543
No 14
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=99.64 E-value=1.9e-15 Score=107.91 Aligned_cols=85 Identities=26% Similarity=0.371 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||..++..|+..+++.++|++..
T Consensus 46 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~ 122 (487)
T 2w8n_A 46 GVREARAAVRAAYEAFC---RWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEE 122 (487)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999 999999999999999999999999999999999999999999988999999999999998
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.+..
T Consensus 123 ~~~~~g~~ 130 (487)
T 2w8n_A 123 ARRVYGDI 130 (487)
T ss_dssp GGGCCCEE
T ss_pred HHHhcCcc
Confidence 87766554
No 15
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=99.64 E-value=1.7e-15 Score=108.75 Aligned_cols=85 Identities=28% Similarity=0.498 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++..|+..+++.++||+..
T Consensus 62 ~~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~ 138 (515)
T 2d4e_A 62 GEREVDRAAKAAHEAFQ---RWSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQVLRIVRAQVARAAENFAFYAEY 138 (515)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.+..
T Consensus 139 ~~~~~g~~ 146 (515)
T 2d4e_A 139 AEHAMEDR 146 (515)
T ss_dssp GGGTTCEE
T ss_pred HHHhcCcc
Confidence 98877654
No 16
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=99.64 E-value=1.9e-15 Score=108.82 Aligned_cols=87 Identities=34% Similarity=0.575 Sum_probs=80.9
Q ss_pred ChHHHHHHHHHHHHHh--cCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAF--KRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFA 78 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~--~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a 78 (100)
+.+|++.|+++|++|| . .|+.++..+|.++|.+++++|++++++|+++++.|+|||..++..|+..+++.++|++
T Consensus 59 ~~~dv~~av~aA~~A~~~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a 135 (528)
T 3u4j_A 59 SADDVRKAVAAARKAFDAG---PWPRMSGAERSRLMFKVADLILARQEELALIESLEVGKPIAQARGEIGFCADLWSYAA 135 (528)
T ss_dssp CHHHHHHHHHHHHHHHHTS---SGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccc---ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999 8 8999999999999999999999999999999999999999999779999999999999
Q ss_pred hchhhhcCcccC
Q psy13780 79 GWCDKIEGSTIP 90 (100)
Q Consensus 79 ~~~~~~~~~~~~ 90 (100)
..+.++.+...+
T Consensus 136 ~~~~~~~~~~~~ 147 (528)
T 3u4j_A 136 GQARALEGQTHN 147 (528)
T ss_dssp HHHTTCCEEEEC
T ss_pred HHHHHhcCeeec
Confidence 999887665433
No 17
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=99.64 E-value=1.7e-15 Score=108.90 Aligned_cols=88 Identities=48% Similarity=0.944 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH-hhHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI-FDLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~~~~~a~ 79 (100)
+.+|++.||++|++||+.| .|+.+|+.+|.++|.+++++|.+|.++|+.+++.|+|||+.++. .|+..+++.++||+.
T Consensus 72 ~~~dv~~av~aA~~A~~~g-~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~ 150 (517)
T 2o2p_A 72 QVSDVDKAVAAAKEAFENG-LWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAG 150 (517)
T ss_dssp CHHHHHHHHHHHHHHHHTS-GGGTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccC-ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999722 59999999999999999999999999999999999999999998 699999999999999
Q ss_pred chhhhcCccc
Q psy13780 80 WCDKIEGSTI 89 (100)
Q Consensus 80 ~~~~~~~~~~ 89 (100)
.+.++.+...
T Consensus 151 ~~~~~~g~~~ 160 (517)
T 2o2p_A 151 WCDKIQGATI 160 (517)
T ss_dssp HGGGCCEEEE
T ss_pred HHHHhcCccc
Confidence 9988766543
No 18
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=99.64 E-value=2.5e-15 Score=107.63 Aligned_cols=85 Identities=25% Similarity=0.475 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||. .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus 57 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~ 133 (500)
T 2j6l_A 57 SVADYEETVKKAREAWK---IWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKILVEGVGEVQEYVDICDYAVGL 133 (500)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999977999999999999998
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.+..
T Consensus 134 ~~~~~g~~ 141 (500)
T 2j6l_A 134 SRMIGGPI 141 (500)
T ss_dssp TTTCCCBE
T ss_pred HHHhcCcc
Confidence 87765543
No 19
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=99.64 E-value=2.6e-15 Score=108.31 Aligned_cols=85 Identities=26% Similarity=0.445 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|+.+|.++|.+++++|++++++|+++++.|+|||+.++..|+..+++.++||+..
T Consensus 72 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~~~a~~ 148 (538)
T 3qan_A 72 NQDLAEKAIQSADEAFQ---TWRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPWKEADADTAEAIDFLEYYARQ 148 (538)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999998
Q ss_pred h-hhhcCcc
Q psy13780 81 C-DKIEGST 88 (100)
Q Consensus 81 ~-~~~~~~~ 88 (100)
+ ....+..
T Consensus 149 ~~~~~~~~~ 157 (538)
T 3qan_A 149 MIELNRGKE 157 (538)
T ss_dssp HHHHHTCBC
T ss_pred HHHhcCCee
Confidence 4 4444443
No 20
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=99.63 E-value=1.4e-15 Score=108.79 Aligned_cols=85 Identities=33% Similarity=0.548 Sum_probs=79.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||..++.. |+..+++.++|++.
T Consensus 58 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~ 134 (495)
T 1wnd_A 58 SAEQVDAAVRAADAAFA---EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAG 134 (495)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999 999999999999999999999999999999999999999999988 99999999999999
Q ss_pred chhhhcCcc
Q psy13780 80 WCDKIEGST 88 (100)
Q Consensus 80 ~~~~~~~~~ 88 (100)
.+.++.+..
T Consensus 135 ~~~~~~g~~ 143 (495)
T 1wnd_A 135 AARCLNGLA 143 (495)
T ss_dssp HTTCCEEEC
T ss_pred HHHHhcCcc
Confidence 988776543
No 21
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=99.63 E-value=1.5e-15 Score=108.19 Aligned_cols=85 Identities=21% Similarity=0.348 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++++|++||+ .|+.+|..+|.++|.+++++|.+|.++|+++++.|+|||+.++..|+..+++.++|++..
T Consensus 38 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~ 114 (475)
T 1euh_A 38 STEEVDYVYASAKKAQP---AWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKSAVSEVVRTAEIINYAAEE 114 (475)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999 999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.++.
T Consensus 115 ~~~~~~~~ 122 (475)
T 1euh_A 115 GLRMEGEV 122 (475)
T ss_dssp HTTCCEEE
T ss_pred HHHhcCCc
Confidence 88776553
No 22
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=99.62 E-value=4.1e-15 Score=105.47 Aligned_cols=84 Identities=21% Similarity=0.231 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.++++|++||. .|+.+|..+|.++|.+++++|+++.++|+++++.|+|||..++.. |+..++..++|++.
T Consensus 26 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~ 102 (457)
T 3lns_A 26 SPAKIDSLFSAQKAYFA---TRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPKDVVDLAEIGAVLHEIDFALA 102 (457)
T ss_dssp CHHHHHHHHHHHHHHHH---TTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHHTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999985 99999999999999
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+.++.+.
T Consensus 103 ~~~~~~~~ 110 (457)
T 3lns_A 103 HLDEWVAP 110 (457)
T ss_dssp HHHHHTSC
T ss_pred HHHHhhcc
Confidence 98887653
No 23
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=99.62 E-value=3.5e-15 Score=106.40 Aligned_cols=85 Identities=28% Similarity=0.450 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|.++.++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus 45 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 121 (481)
T 3jz4_A 45 GADETRAAIDAANRALP---AWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEE 121 (481)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.+..+..
T Consensus 122 ~~~~~~~~ 129 (481)
T 3jz4_A 122 GKRIYGDT 129 (481)
T ss_dssp GGGCCEEE
T ss_pred HHHhcCcc
Confidence 77655443
No 24
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=99.62 E-value=4.3e-15 Score=106.60 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||..++..|+..++..++||+..
T Consensus 28 ~~~~v~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~Ev~~~~~~~~~~a~~ 104 (510)
T 1ez0_A 28 TEVEVNQAATAAAKVAR---DFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEVRLTGEIARTANQLRLFADV 104 (510)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999998888999999999999999
Q ss_pred hhh--hcCc
Q psy13780 81 CDK--IEGS 87 (100)
Q Consensus 81 ~~~--~~~~ 87 (100)
+.+ +.++
T Consensus 105 ~~~~~~~~~ 113 (510)
T 1ez0_A 105 VNSGSYHQA 113 (510)
T ss_dssp HHHTGGGCE
T ss_pred HHhCccccc
Confidence 876 5543
No 25
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=99.62 E-value=4.2e-15 Score=105.46 Aligned_cols=85 Identities=14% Similarity=0.296 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++++|++||. .|+.+|..+|.++|.+++++|++|.++|+++++.|+|||..++..|+..++..++|++..
T Consensus 27 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 103 (462)
T 3etf_A 27 NAQEIEHALSLAASGFK---KWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIKQARAEVTKSAALCDWYAEH 103 (462)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.++.
T Consensus 104 ~~~~~~~~ 111 (462)
T 3etf_A 104 GPAMLNPE 111 (462)
T ss_dssp HHHHTSCE
T ss_pred HHHhcCCc
Confidence 88776543
No 26
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=99.61 E-value=5.5e-15 Score=105.45 Aligned_cols=85 Identities=15% Similarity=0.229 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|++|.++|+.+++.|+|||+.++..|+..++..++|++..
T Consensus 42 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 118 (485)
T 4dng_A 42 TGKQLEDAFDIAQKAQK---EWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIKSTIELEQTIAILDEAMTY 118 (485)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+..+.+..
T Consensus 119 ~~~~~~~~ 126 (485)
T 4dng_A 119 TGELGGVK 126 (485)
T ss_dssp GGGCSCEE
T ss_pred HHHhCCee
Confidence 87765543
No 27
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=99.61 E-value=3.6e-15 Score=108.08 Aligned_cols=85 Identities=22% Similarity=0.307 Sum_probs=79.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHcCCChHHHHhh-HHHHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKN-VDYLASLETLDNGKPYEDSIFD-LGCASDTFRYFA 78 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~-~~~l~~~~~~e~Gk~~~~a~~e-v~~~~~~~~~~a 78 (100)
+.+||+.||++|++||+ .|+.+|..+|.++|.+++++|.++ +++|+.+++.|+|||+.++..+ +..+++.++|++
T Consensus 98 ~~~dv~~Av~aA~~A~~---~W~~~~~~~R~~iL~~~a~~l~~~~~~el~~~~~~e~Gk~~~ea~~e~v~~~~~~~~~~a 174 (563)
T 4e3x_A 98 DKALLNRAIDAALAARK---EWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTVIQAEIDAAAELIDFFRFNA 174 (563)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHcCCCHHHHhHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999 9999999999999999999886 999999999999
Q ss_pred hchhhhcCcc
Q psy13780 79 GWCDKIEGST 88 (100)
Q Consensus 79 ~~~~~~~~~~ 88 (100)
..+.++.+..
T Consensus 175 ~~~~~~~~~~ 184 (563)
T 4e3x_A 175 KFAVELEGEQ 184 (563)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHhhCCC
Confidence 9998887643
No 28
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=99.61 E-value=4.7e-15 Score=106.08 Aligned_cols=87 Identities=28% Similarity=0.429 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH-hhHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI-FDLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~~~~~a~ 79 (100)
+.+|++.|+++|++||+.| .|+.+|+.+|.++|.+++++|.+|+++|+++++.|+|||+.++. .|+..+++.++||+.
T Consensus 44 ~~~~v~~av~~A~~A~~~g-~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~ 122 (495)
T 3b4w_A 44 AAADVDAAVAAARAAFDNG-PWPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPPTIIETMHWMGSMGAMNYFAG 122 (495)
T ss_dssp CHHHHHHHHHHHHHHHHHS-STTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcccC-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999721 59999999999999999999999999999999999999999998 799999999999999
Q ss_pred chhhhcCcc
Q psy13780 80 WCDKIEGST 88 (100)
Q Consensus 80 ~~~~~~~~~ 88 (100)
.+.++.+..
T Consensus 123 ~~~~~~g~~ 131 (495)
T 3b4w_A 123 AADKVTWTE 131 (495)
T ss_dssp CGGGSCSEE
T ss_pred HHHHhcCCc
Confidence 998887653
No 29
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=99.61 E-value=6.2e-15 Score=106.12 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=77.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||. .|+.+|..+|.++|.+++++|++|+++|+.+++.|+|||+.++..|+..+++.++||+..
T Consensus 61 ~~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~ 137 (528)
T 3v4c_A 61 TVELVNRACEAAEEAFW---TYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPEARLNGERGRTTGQLRLFADH 137 (528)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhh
Q psy13780 81 CDK 83 (100)
Q Consensus 81 ~~~ 83 (100)
+.+
T Consensus 138 ~~~ 140 (528)
T 3v4c_A 138 IEK 140 (528)
T ss_dssp HHH
T ss_pred Hhh
Confidence 877
No 30
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=99.61 E-value=6e-15 Score=112.57 Aligned_cols=85 Identities=27% Similarity=0.422 Sum_probs=80.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+||+.||++|++||+ .|+.+|+.+|.++|.+++++|.+++++|+.+++.|+|||+.++..|+..+++.++||+..
T Consensus 566 ~~~dv~~Av~aA~~A~~---~W~~~~~~eRa~iL~~~Adll~~~~~eLa~~~~~E~GK~~~ea~~Ev~~aid~lr~~a~~ 642 (1026)
T 4f9i_A 566 GTTEVGDAIAAAKAAFP---AWRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQWDQAYADVTEAIDFLEYYARE 642 (1026)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.+..
T Consensus 643 ~~~~~~~~ 650 (1026)
T 4f9i_A 643 MIRLGQPQ 650 (1026)
T ss_dssp HHHHTSCE
T ss_pred HHHhcCCc
Confidence 98876543
No 31
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=99.61 E-value=4.5e-15 Score=106.78 Aligned_cols=83 Identities=27% Similarity=0.391 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|++|+++|+++++.|+|||..++..|+..+++.++||+..
T Consensus 62 ~~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~~~a~~ 138 (521)
T 4e4g_A 62 SDADLAAAVESAKAAQP---KWAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTIDDAKGDIVRGLEVCEFVIGI 138 (521)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhcC
Q psy13780 81 CDKIEG 86 (100)
Q Consensus 81 ~~~~~~ 86 (100)
...+.+
T Consensus 139 ~~~~~~ 144 (521)
T 4e4g_A 139 PHLQKS 144 (521)
T ss_dssp HHHTCE
T ss_pred HHHhcC
Confidence 655543
No 32
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=99.61 E-value=4.9e-15 Score=105.85 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++++|++||. .|+.+|..+|.++|.+++++|++|+++|+++++.|+|||..++..|+..+++.++|++..
T Consensus 40 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~~~~ 116 (490)
T 3ju8_A 40 DATQVDAAVCAAREAFP---AWARRPLEQRIELLERFAATLKSRADELARVIGEETGKPLWESATEVTSMVNKVAISVQA 116 (490)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999 999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+..+.+..
T Consensus 117 ~~~~~~~~ 124 (490)
T 3ju8_A 117 FRERTGEK 124 (490)
T ss_dssp HHHHSCCE
T ss_pred HHHhcCCc
Confidence 87776543
No 33
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=99.60 E-value=7.1e-15 Score=104.58 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|++|.++|+++++.|+|||..++.. |+..++..+++++.
T Consensus 16 s~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~~~ 92 (469)
T 3sza_A 16 HMSKISEAVKRARAAFS---SGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEWNAYYEEVVYVLEEIEYMIQ 92 (469)
T ss_dssp --CHHHHHHHHHHHHHH---TTTTCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999 999999999999999999999999999999999999999999985 99999999999998
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+..|..+
T Consensus 93 ~~~~~~~~ 100 (469)
T 3sza_A 93 KLPEWAAD 100 (469)
T ss_dssp HHHHHHSC
T ss_pred HHHhhhcc
Confidence 88777543
No 34
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=99.60 E-value=6.4e-15 Score=105.47 Aligned_cols=83 Identities=23% Similarity=0.374 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH-hhHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI-FDLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~~~~~a~ 79 (100)
+.+|++.|+++|++||+ .|+.+|+.+|.++|.+++++|++|.++|+++++.|+|||+.++. .|+..+++.+++++.
T Consensus 61 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~ 137 (497)
T 3i44_A 61 STRDADKAINAAKKAFQ---TWKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPIDMALNAQTATGSSHIRNFIK 137 (497)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 99999999999999999999999999999999999999999999 699999999999999
Q ss_pred chhhhcC
Q psy13780 80 WCDKIEG 86 (100)
Q Consensus 80 ~~~~~~~ 86 (100)
.+..+..
T Consensus 138 ~~~~~~~ 144 (497)
T 3i44_A 138 AYKEFSF 144 (497)
T ss_dssp HHHHCCS
T ss_pred Hhhcccc
Confidence 8776543
No 35
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=99.60 E-value=4.3e-15 Score=106.08 Aligned_cols=83 Identities=25% Similarity=0.515 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++..|+..+++.++|++..
T Consensus 41 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 117 (486)
T 1t90_A 41 TKEDIDYAAQTAAEAFK---TWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGA 117 (486)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999 999999999999999999999999999999999999999999988999999999999876
Q ss_pred hhhhcC
Q psy13780 81 CDKIEG 86 (100)
Q Consensus 81 ~~~~~~ 86 (100)
...+.+
T Consensus 118 ~~~~~g 123 (486)
T 1t90_A 118 PSLMMG 123 (486)
T ss_dssp HHHHCE
T ss_pred HHHhcC
Confidence 555444
No 36
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=99.60 E-value=6e-15 Score=105.70 Aligned_cols=87 Identities=29% Similarity=0.546 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHhcCC--CccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHH
Q psy13780 1 MSADVDKAVESAKAAFKRG--SVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFA 78 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~--~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a 78 (100)
+.+||+.|+++|++||..+ +.|+.+|..+|.++|.+++++|++|+++|+++++.|+|||+.++..|+..++..++|++
T Consensus 43 ~~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a 122 (503)
T 3iwj_A 43 TKEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPLDEAAWDIDDVAGCFEYYA 122 (503)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999732 16999999999999999999999999999999999999999999889999999999999
Q ss_pred hchhhhcCc
Q psy13780 79 GWCDKIEGS 87 (100)
Q Consensus 79 ~~~~~~~~~ 87 (100)
..+.++.+.
T Consensus 123 ~~~~~~~~~ 131 (503)
T 3iwj_A 123 DLAEKLDAR 131 (503)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhcCC
Confidence 998877543
No 37
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=99.59 E-value=1.1e-14 Score=104.25 Aligned_cols=88 Identities=49% Similarity=0.855 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH-hhHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI-FDLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~~~~~a~ 79 (100)
+.+|++.|+++|++||+.||.|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++. .|+..+++.++||+.
T Consensus 56 ~~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~e~~~~ev~~~~~~~~~~a~ 135 (501)
T 1bxs_A 56 DKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAG 135 (501)
T ss_dssp CHHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999721149999999999999999999999999999999999999999875 499999999999999
Q ss_pred chhhhcCcc
Q psy13780 80 WCDKIEGST 88 (100)
Q Consensus 80 ~~~~~~~~~ 88 (100)
.+.++.++.
T Consensus 136 ~~~~~~g~~ 144 (501)
T 1bxs_A 136 WADKIQGRT 144 (501)
T ss_dssp HGGGCCEEE
T ss_pred HHHHhhCCe
Confidence 998887654
No 38
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=99.59 E-value=6.8e-15 Score=105.08 Aligned_cols=84 Identities=36% Similarity=0.618 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.++++|++||. .|+.++..+|.++|.+++++|.+|.++|+++++.|+|||..++.. |+..++..++|++.
T Consensus 42 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~ 118 (490)
T 2ve5_A 42 SREDVERAVQSAVEGQK---VWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAG 118 (490)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999987 99999999999999
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+.++.+.
T Consensus 119 ~~~~~~~~ 126 (490)
T 2ve5_A 119 LVPAIEGE 126 (490)
T ss_dssp HGGGCCEE
T ss_pred HHHHhcCc
Confidence 88776543
No 39
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=99.59 E-value=7.5e-15 Score=105.31 Aligned_cols=83 Identities=25% Similarity=0.387 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.++..+|.++|.+++++|++|.++|+++++.|+|||..++..|+..++..++|++..
T Consensus 48 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~Ev~~~~~~~~~~a~~ 124 (508)
T 3r64_A 48 SIADVDAAYEAAKKAQA---EWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGSTRSKANLEITLAGNITKESASF 124 (508)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhcC
Q psy13780 81 CDKIEG 86 (100)
Q Consensus 81 ~~~~~~ 86 (100)
+..+.+
T Consensus 125 ~~~~~~ 130 (508)
T 3r64_A 125 PGRVHG 130 (508)
T ss_dssp TTTCCE
T ss_pred hhhhcC
Confidence 876554
No 40
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=99.58 E-value=1.3e-14 Score=103.35 Aligned_cols=84 Identities=25% Similarity=0.233 Sum_probs=78.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHH-HhhHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS-IFDLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a-~~ev~~~~~~~~~~a~ 79 (100)
+.+|++.++++|++||+ .|+.+|+.+|.++|.++++.|++|.++|+++++.|+|||..++ ..|+..++..++|++.
T Consensus 43 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~ 119 (478)
T 3ty7_A 43 NKADVDKAVEAADDVYL---EFRHTSVKERQALLDKIVKEYENRKDDIVQAITDELGAPLSLSERVHYQMGLNHFVAARD 119 (478)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHH
Confidence 46899999999999999 9999999999999999999999999999999999999999999 5699999999999999
Q ss_pred chhhhcCc
Q psy13780 80 WCDKIEGS 87 (100)
Q Consensus 80 ~~~~~~~~ 87 (100)
.+.++.+.
T Consensus 120 ~~~~~~~~ 127 (478)
T 3ty7_A 120 ALDNYEFE 127 (478)
T ss_dssp HHHHCCSE
T ss_pred HHHHhhcc
Confidence 98876553
No 41
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=99.58 E-value=8.1e-15 Score=104.36 Aligned_cols=83 Identities=13% Similarity=0.211 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|+++||++|++||+ .|+.+|+.+|.++|.+++++|.+|+++|+++++.|+|||.. +..|+...+..+++|+..
T Consensus 26 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~-~~~ev~~~~~~~~~~~~~ 101 (474)
T 4h7n_A 26 PPRLLAQQCNRARRAQS---RWQELGVEGRITTLQQWKQAILSRREQLTEALVNDTGRLSI-TVLEIDSFLASIDRWCGL 101 (474)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHSCSHH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHhh
Confidence 46899999999999999 99999999999999999999999999999999999999854 456999999999999998
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+.++...
T Consensus 102 ~~~~~~~ 108 (474)
T 4h7n_A 102 APELLQT 108 (474)
T ss_dssp HHHHHCC
T ss_pred hhhcccc
Confidence 8776543
No 42
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=99.58 E-value=8.3e-15 Score=105.30 Aligned_cols=78 Identities=29% Similarity=0.469 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|+++.++|+++++.|+|||..++ |+..+++.++|++..
T Consensus 50 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea--ev~~~~~~~~~~a~~ 124 (517)
T 3r31_A 50 TPAIVERAIASAKRAQK---EWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQET--IVADPTSGADAFEFF 124 (517)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHH--HHHSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHH
Confidence 46899999999999999 9999999999999999999999999999999999999999998 999999999999999
Q ss_pred hhh
Q psy13780 81 CDK 83 (100)
Q Consensus 81 ~~~ 83 (100)
+..
T Consensus 125 ~~~ 127 (517)
T 3r31_A 125 GGI 127 (517)
T ss_dssp HHH
T ss_pred hhh
Confidence 877
No 43
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=99.58 E-value=1.4e-14 Score=103.72 Aligned_cols=88 Identities=56% Similarity=0.931 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
+.+|++.|+++|++||+.||.|+.+|+.+|.++|.+++++|.+|+++|+++++.|+|||+.++.. |+..+++.++||+.
T Consensus 55 ~~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~ 134 (500)
T 1o04_A 55 DKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAG 134 (500)
T ss_dssp CHHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999997111599999999999999999999999999999999999999998754 99999999999999
Q ss_pred chhhhcCcc
Q psy13780 80 WCDKIEGST 88 (100)
Q Consensus 80 ~~~~~~~~~ 88 (100)
.+.++.++.
T Consensus 135 ~~~~~~g~~ 143 (500)
T 1o04_A 135 WADKYHGKT 143 (500)
T ss_dssp HTTTCCEEE
T ss_pred HHHHhhCcc
Confidence 998887654
No 44
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=99.57 E-value=1.4e-14 Score=103.74 Aligned_cols=86 Identities=21% Similarity=0.307 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.|+++|++||+. .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||..++..|+..+++.++||+..
T Consensus 52 ~~~~v~~av~~A~~A~~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~~~a~~ 129 (501)
T 1uxt_A 52 SREEVERTLDVLFKRGRW--SARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDRLRLAELD 129 (501)
T ss_dssp CHHHHHHHHHHHHHTHHH--HHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTGGGG
T ss_pred CHHHHHHHHHHHHHHhhh--hhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999961 499999999999999999999999999999999999999999989999999999999999
Q ss_pred hhhhcCcc
Q psy13780 81 CDKIEGST 88 (100)
Q Consensus 81 ~~~~~~~~ 88 (100)
+.++.+..
T Consensus 130 ~~~~~g~~ 137 (501)
T 1uxt_A 130 LKKIGGDY 137 (501)
T ss_dssp GGGTCCEE
T ss_pred HHHhcCcc
Confidence 98876654
No 45
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=99.56 E-value=2.6e-14 Score=108.93 Aligned_cols=84 Identities=27% Similarity=0.396 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+||+.||++|++||. .|+.+|+.+|.++|.+++++|++|+++|+.+++.|+|||+.++..||..+++.++||+..
T Consensus 548 ~~~dv~~Av~aA~~A~~---~W~~~~~~eR~~iL~~~ad~l~~~~~eLa~~~~~E~GK~~~ea~~Ev~~ai~~lr~~a~~ 624 (1001)
T 3haz_A 548 TPDQAHAAVAAARAGFA---GWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTLDDALSELREAADFCRYYAAQ 624 (1001)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 999999999999999999999999999999999999999999989999999999999999
Q ss_pred hhhhcCc
Q psy13780 81 CDKIEGS 87 (100)
Q Consensus 81 ~~~~~~~ 87 (100)
+..+.+.
T Consensus 625 a~~~~g~ 631 (1001)
T 3haz_A 625 GRKLFGS 631 (1001)
T ss_dssp HHHHHSS
T ss_pred HHhhcCc
Confidence 8877653
No 46
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Probab=99.54 E-value=2.2e-14 Score=103.39 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHH-hcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhch
Q psy13780 3 ADVDKAVESAKAA-FKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWC 81 (100)
Q Consensus 3 ~~v~~ai~~a~~a-~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~ 81 (100)
+|++.||++|++| |+ .|+.+|..+|.++|.+++++|++|+++|+++++.|+|||+.++..|+..++..++||+..+
T Consensus 43 ~dv~~Av~aA~~A~~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~ 119 (534)
T 2y53_A 43 LDLARAFSFAREDGGA---ALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTRNDSAVDIDGGIFTLSYYAKLG 119 (534)
T ss_dssp CCHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh---hhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999 59 9999999999999999999999999999999999999999999889999999999999987
Q ss_pred hhhc
Q psy13780 82 DKIE 85 (100)
Q Consensus 82 ~~~~ 85 (100)
.++.
T Consensus 120 ~~~~ 123 (534)
T 2y53_A 120 ASLG 123 (534)
T ss_dssp HTTC
T ss_pred Hhcc
Confidence 6653
No 47
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=99.50 E-value=2.7e-14 Score=101.45 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc-------CCChH----HHHhhHHHH
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDN-------GKPYE----DSIFDLGCA 70 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~-------Gk~~~----~a~~ev~~~ 70 (100)
.+|++.|+++|++||+ .|+.+|..+|.++|.+++++|.+++++|+++++.|+ |||+. ++..||..+
T Consensus 28 ~~~v~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~g~~~~~~Gk~~~~rl~~a~~ev~~~ 104 (463)
T 2h5g_A 28 GPTVEQQGEMARSGGR---MLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEGRLAAPLLKRLSLSTSKLNSL 104 (463)
T ss_dssp -CCHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTSCHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccccCCCchhhhhhhhHHHHHHH
Confidence 4579999999999999 999999999999999999999999999999999999 79997 466799999
Q ss_pred HHHHHHHHhchhhhcCcc
Q psy13780 71 SDTFRYFAGWCDKIEGST 88 (100)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~ 88 (100)
++.++|++..+.++.++.
T Consensus 105 ~~~~~~~a~~~~~~~g~~ 122 (463)
T 2h5g_A 105 AIGLRQIAASSQDSVGRV 122 (463)
T ss_dssp HHHHHHHHHHCTTSTTCE
T ss_pred HHHHHHHHHhhHhhcCcc
Confidence 999999998887776654
No 48
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=99.40 E-value=5.8e-13 Score=93.79 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCh----HHHH--------hhHHH
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY----EDSI--------FDLGC 69 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~----~~a~--------~ev~~ 69 (100)
.++++.+|++|++||+ .|+.+|+.+|.++|.+++++|.+|+++|+++++.|+|||. .++. .|+..
T Consensus 13 ~~~~~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~ev~~ 89 (427)
T 1o20_A 13 MDELLEKAKKVREAWD---VLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDE 89 (427)
T ss_dssp -CHHHHHHHHHHHHHH---HHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccHHHHHHHhcCHHHHHH
Confidence 3689999999999999 9999999999999999999999999999999999999986 4553 48999
Q ss_pred HHHHHHHHHhchhh
Q psy13780 70 ASDTFRYFAGWCDK 83 (100)
Q Consensus 70 ~~~~~~~~a~~~~~ 83 (100)
+++.+++|+.....
T Consensus 90 ~~~~l~~~a~~~~~ 103 (427)
T 1o20_A 90 MIKACETVIGLKDP 103 (427)
T ss_dssp HHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhcccc
Confidence 99999999987654
No 49
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=99.39 E-value=2.2e-12 Score=91.38 Aligned_cols=75 Identities=13% Similarity=0.089 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHH-HHHH
Q psy13780 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTF-RYFA 78 (100)
Q Consensus 1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~-~~~a 78 (100)
+.+|++.++++|++||+ .|+.+|.++|.++|.+++++|.+|+++|+++++.|+|||..++.. ++..+...+ ++++
T Consensus 5 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~e~Gk~~~e~~~~~~~~a~~~~~~~~~ 81 (452)
T 3my7_A 5 NMAELDAMIARVKKAQE---EFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMGIVEDKVIKNHFASEFIYNKYK 81 (452)
T ss_dssp SHHHHHHHHHHHHHHHH---HHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999 999999999999999999999999999999999999999999886 777777766 4444
No 50
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=99.36 E-value=3.9e-13 Score=95.65 Aligned_cols=79 Identities=16% Similarity=0.316 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCh----HHHH-hhHHH-HHHHHHHH
Q psy13780 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY----EDSI-FDLGC-ASDTFRYF 77 (100)
Q Consensus 4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~----~~a~-~ev~~-~~~~~~~~ 77 (100)
.++.|+++|++||+ .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||. .++. .|+.. ++..++++
T Consensus 15 ~~~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~~~ 91 (468)
T 1vlu_A 15 SSQQIAKNARKAGN---ILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVM 91 (468)
T ss_dssp HHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHH
T ss_pred hHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccchHHHHHHhhhhHHHHHHH
Confidence 57899999999999 9999999999999999999999999999999999999998 8875 58888 88999999
Q ss_pred Hhchhhhc
Q psy13780 78 AGWCDKIE 85 (100)
Q Consensus 78 a~~~~~~~ 85 (100)
+..++++.
T Consensus 92 a~~~~~~~ 99 (468)
T 1vlu_A 92 LQGIKDVA 99 (468)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99887775
No 51
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=99.33 E-value=3.7e-12 Score=90.08 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChH----HHH--------hhHHH
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE----DSI--------FDLGC 69 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~----~a~--------~ev~~ 69 (100)
.+|++.|+++|++||+ .|+.+|+.+|.++|.+++++|.+|.++|+++++.|+||+.. ++. .++..
T Consensus 25 ~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v~~ 101 (444)
T 4ghk_A 25 DQYMTDVGRRARRASR---SIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKT 101 (444)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhccchHHHHHHhhccHHHHHH
Confidence 4689999999999999 99999999999999999999999999999999999999853 444 26888
Q ss_pred HHHHHHHHHhchh
Q psy13780 70 ASDTFRYFAGWCD 82 (100)
Q Consensus 70 ~~~~~~~~a~~~~ 82 (100)
++..+++++....
T Consensus 102 ~~~~l~~~a~~~~ 114 (444)
T 4ghk_A 102 MVEGLRQVATLPD 114 (444)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhcc
Confidence 9999999987654
No 52
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=99.32 E-value=9.4e-12 Score=88.41 Aligned_cols=75 Identities=16% Similarity=0.085 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG 79 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~ 79 (100)
.+|++.++++|++||+ .|+.+|.++|.++|.+++++|.++.++|+++++.|+|||..++.. +.......+..++.
T Consensus 11 ~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~e~~~~~~~~~~~~~~~~~~ 86 (464)
T 3k9d_A 11 IQEVRNLIESANKAQK---ELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGIWQDKVIKNVFASKHVYNYIK 86 (464)
T ss_dssp HHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999 999999999999999999999999999999999999999988765 44455555544443
No 53
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=81.87 E-value=2.1 Score=20.54 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q psy13780 29 GRGKLIYKLAELIDKNVDYLASLETLDNGK 58 (100)
Q Consensus 29 ~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk 58 (100)
-..++|.-+...|.+-+++|++++..|..+
T Consensus 12 ~KqEIL~E~RkElqK~K~EIIeAi~~El~~ 41 (45)
T 1use_A 12 VKQELLEEVKKELQKVKEEIIEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356889999999999999999999887653
No 54
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=74.37 E-value=6.6 Score=19.74 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=28.0
Q ss_pred HHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780 12 AKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLAS 50 (100)
Q Consensus 12 a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~ 50 (100)
++..-. .|..+|.++|..+.......-..+..++..
T Consensus 30 ~k~lg~---~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~ 65 (67)
T 3fgh_A 30 LKTVKE---NWKNLSDSEKELYIQHAKEDETRYHNEMKS 65 (67)
T ss_dssp HHHHHH---HHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445 799999999999998888887777777653
No 55
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.79 E-value=9.3 Score=20.29 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=28.3
Q ss_pred HHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780 12 AKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLAS 50 (100)
Q Consensus 12 a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~ 50 (100)
++..-. .|..++.++|..+.......-..+..++..
T Consensus 49 sk~lg~---~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 49 SKKCSE---RWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp HHHHHH---HHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445 799999999999998888888888777653
No 56
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=68.69 E-value=13 Score=20.59 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=31.6
Q ss_pred HHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy13780 12 AKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLE 52 (100)
Q Consensus 12 a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~ 52 (100)
++..-. .|..++.+++..+.......-..+..++....
T Consensus 38 sK~lge---~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 75 (101)
T 1v63_A 38 MVEIGS---RWQRISQSQKEHYKKLAEEQQRQYKVHLDLWV 75 (101)
T ss_dssp HHHHHH---HHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555 79999999999999999998888998888654
No 57
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=67.68 E-value=5.2 Score=25.32 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=20.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDK 43 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~ 43 (100)
.|+..++++|.+....|..+|..
T Consensus 85 ~wr~at~~Qr~~F~~~F~~~L~~ 107 (211)
T 2qgu_A 85 FWSQATPEQQQQIQDGFKSLLIR 107 (211)
T ss_dssp GTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hHhhCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999988888766
No 58
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=65.18 E-value=11 Score=19.65 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=22.3
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYL 48 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 48 (100)
.|..+|.++|..+.......-..+..++
T Consensus 40 ~Wk~ls~eeK~~y~~~A~~~k~~y~~~~ 67 (80)
T 1gt0_D 40 EWKLLSETEKRPFIDEAKRLRALHMKEH 67 (80)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 7999999999999888777766666543
No 59
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=64.91 E-value=11 Score=19.40 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=21.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDY 47 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~ 47 (100)
.|..++.++|..+.......-..+..+
T Consensus 42 ~Wk~ls~~eK~~y~~~A~~~k~~y~~~ 68 (76)
T 1hry_A 42 QWKMLTEAEKWPFFQEAQKLQAMHREK 68 (76)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999987777766666544
No 60
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=63.51 E-value=16 Score=20.04 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=29.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDN 56 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~ 56 (100)
.|..++.++|..+.......-..+..++...-....
T Consensus 55 ~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~ 90 (102)
T 2co9_A 55 MWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLV 90 (102)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 799999999999999988888888888776554433
No 61
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=63.02 E-value=17 Score=20.37 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=28.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASLE 52 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~ 52 (100)
.|..++.+++..+.......-..+..++....
T Consensus 51 ~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 51 QWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999988888888887654
No 62
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=62.27 E-value=12 Score=20.14 Aligned_cols=30 Identities=10% Similarity=0.237 Sum_probs=25.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLAS 50 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~ 50 (100)
.|..++.++|..+.......-..+..++..
T Consensus 45 ~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 74 (92)
T 2crj_A 45 EWSKLQPAEKQRYLDEAEKEKQQYLKELWA 74 (92)
T ss_dssp HHHTCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999998888888888777764
No 63
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=62.25 E-value=11 Score=19.48 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=21.3
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDY 47 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~ 47 (100)
.|..+|.++|..+.......-..|..+
T Consensus 40 ~Wk~ls~~eK~~y~~~A~~~k~~y~~~ 66 (79)
T 3u2b_C 40 RWKLLKDSDKIPFIQEAERLRLKHMAD 66 (79)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999988777766666544
No 64
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=60.95 E-value=12 Score=17.48 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780 26 DASGRGKLIYKLAELIDKNVDYLAS 50 (100)
Q Consensus 26 ~~~~R~~~L~~~~~~l~~~~~~l~~ 50 (100)
++++|..+++++.+.|......|.-
T Consensus 2 s~~ere~~i~~LreeLR~EEaKLvL 26 (43)
T 2l2l_A 2 SPEERERMIKQLKEELRLEEAKLVL 26 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999888776655553
No 65
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=59.06 E-value=13 Score=19.45 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=21.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYL 48 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 48 (100)
.|..++.++|..+.......-..|..++
T Consensus 44 ~Wk~ls~~eK~~y~~~A~~~k~~y~~~~ 71 (83)
T 3f27_D 44 SWKALTLAEKRPFVEEAERLRVQHMQDH 71 (83)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 7999999999999887777666665543
No 66
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=59.04 E-value=16 Score=19.31 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=21.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYL 48 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 48 (100)
.|..+|.++|..+.......-..|..++
T Consensus 42 ~Wk~ls~eeK~~y~~~A~~~k~~y~~~~ 69 (85)
T 1j46_A 42 QWKMLTEAEKWPFFQEAQKLQAMHREKY 69 (85)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 7999999999988877777666665543
No 67
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=58.65 E-value=8 Score=19.96 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=23.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYL 48 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 48 (100)
.|..+|.++|..+.......-..+..++
T Consensus 44 ~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 71 (77)
T 1hme_A 44 MWNNTAADDKQPYEKKAAKLKEKYEKDI 71 (77)
T ss_dssp HHHHSCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999888887777776665
No 68
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=58.09 E-value=17 Score=19.15 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=21.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYL 48 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 48 (100)
.|..+|.++|..+.......-..|..++
T Consensus 40 ~Wk~ls~eeK~~y~~~A~~~k~~y~~~~ 67 (86)
T 2lef_A 40 RWHALSREEQAKYYELARKERQLHMQLY 67 (86)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999999999888777776666665543
No 69
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=56.27 E-value=8.8 Score=19.35 Aligned_cols=26 Identities=12% Similarity=0.341 Sum_probs=20.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVD 46 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~ 46 (100)
.|..+|.++|..+.......-..|..
T Consensus 40 ~Wk~ls~~eK~~y~~~A~~~k~~y~~ 65 (71)
T 4a3n_A 40 SWKALTLAEKRPFVEEAERLRVQHMQ 65 (71)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999988777666555543
No 70
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=55.51 E-value=19 Score=20.07 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=18.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHh
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~ 44 (100)
..+++|+++|...|.+=.+.|...
T Consensus 7 d~s~LPpeqRkkkL~~Ki~el~~e 30 (98)
T 2ke4_A 7 DFSHLPPEQQRKRLQQQLEERSRE 30 (98)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHH
Confidence 467899999999988766666554
No 71
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.84 E-value=15 Score=19.78 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=24.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASL 51 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~ 51 (100)
.|..++.++|..+.......-..+..++...
T Consensus 45 ~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y 75 (92)
T 2cs1_A 45 LWKTLSEEEKLKYEEKATKDLERYNSQMKRA 75 (92)
T ss_dssp HHHSSCHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999998888777767776666543
No 72
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=54.82 E-value=19 Score=20.01 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=21.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYL 48 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 48 (100)
.|..++.++|..+.......-..+..++
T Consensus 67 ~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 94 (106)
T 4euw_A 67 LWRLLNESEKRPFVEEAERLRVQHKKDH 94 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999887776666665543
No 73
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=54.61 E-value=9.7 Score=19.24 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=22.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYL 48 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l 48 (100)
.|..++.++|..+.......-..+..++
T Consensus 41 ~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 68 (71)
T 1ckt_A 41 RWKTMSAKEKGKFEDMAKADKARYEREM 68 (71)
T ss_dssp HHHTCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999988887777766666554
No 74
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=54.59 E-value=22 Score=18.78 Aligned_cols=26 Identities=12% Similarity=0.325 Sum_probs=20.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVD 46 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~ 46 (100)
.|..++.++|..+.......-.+|..
T Consensus 55 ~Wk~ls~eeK~~y~~~A~~~k~~~~~ 80 (87)
T 2e6o_A 55 RWKKMKNEERRMYTLEAKALAEEQKR 80 (87)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999988877766665544
No 75
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=52.73 E-value=12 Score=19.58 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=23.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLA 49 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~ 49 (100)
.|..++.++|..+.......-..+..++.
T Consensus 47 ~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 75 (83)
T 1aab_A 47 RWKTMSAKEKGKFEDMAKADKARYEREMK 75 (83)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999998888777776666543
No 76
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=49.44 E-value=15 Score=15.34 Aligned_cols=22 Identities=9% Similarity=0.413 Sum_probs=15.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHh
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~ 44 (100)
+|.-....+ .+|.++...+.+|
T Consensus 7 swkckafkq--rvlkrllamlrqh 28 (30)
T 2l3i_A 7 SWKCKAFKQ--RVLKRLLAMLRQH 28 (30)
T ss_dssp CSCCCHHHH--HHHHHHHHHHHTC
T ss_pred chhHHHHHH--HHHHHHHHHHHHh
Confidence 786655554 4678888877765
No 77
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=47.77 E-value=37 Score=19.98 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=26.3
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLAS 50 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~ 50 (100)
.|..++.+++..+.......-..+..++..
T Consensus 126 ~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~ 155 (159)
T 2gzk_A 126 MWNNTAADDKQPYEKKAAKLKEKYEKDIAA 155 (159)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999998888888877764
No 78
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=45.09 E-value=37 Score=18.57 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHH
Q psy13780 7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAEL 40 (100)
Q Consensus 7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~ 40 (100)
-++..|-+.. .|..+|.+.|.+++..+-.+
T Consensus 56 ~aL~gAi~G~----~w~~l~~~~K~~L~~~~~~~ 85 (93)
T 3bqs_A 56 YALEGAVQGI----RWHGLDEAKKIELKKFHQSL 85 (93)
T ss_dssp HHHHHHHHTS----CGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC----CHHHCCHHHHHHHHHHHHHh
Confidence 3455555553 69999999888887766443
No 79
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=44.22 E-value=35 Score=18.06 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhH
Q psy13780 24 NLDASGRGKLIYKLAELIDKNV 45 (100)
Q Consensus 24 ~~~~~~R~~~L~~~~~~l~~~~ 45 (100)
..++.+|..+-.+|++.|..-.
T Consensus 47 ~V~~~qR~~iAe~Fa~AL~~Sv 68 (76)
T 2jr2_A 47 QVPESKRVAVVDNFTKALKQSV 68 (76)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999887643
No 80
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=43.31 E-value=13 Score=20.00 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=26.5
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASL 51 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~ 51 (100)
.|..+|.++|..+.......-..+..++..-
T Consensus 58 ~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 58 KWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp HHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998888888888777653
No 81
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=42.73 E-value=21 Score=19.54 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=23.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLAS 50 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~ 50 (100)
.|..+|.++|..+.......-..+..++..
T Consensus 48 ~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~ 77 (99)
T 1k99_A 48 KYKELPEKKKMKYIQDFQREKQEFERNLAR 77 (99)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999988888887777776666654
No 82
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=41.82 E-value=35 Score=18.40 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=16.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHH
Q psy13780 23 RNLDASGRGKLIYKLAELIDK 43 (100)
Q Consensus 23 ~~~~~~~R~~~L~~~~~~l~~ 43 (100)
...++.+|..+-.+|++.|..
T Consensus 47 ~~V~~~qR~~iAe~Fa~AL~~ 67 (83)
T 2jpq_A 47 QRVAASQRKLIAEKFAQALMS 67 (83)
T ss_dssp HTSCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHH
Confidence 356888999998888888764
No 83
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=41.68 E-value=35 Score=18.26 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=18.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHHh
Q psy13780 23 RNLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 23 ~~~~~~~R~~~L~~~~~~l~~~ 44 (100)
...++.+|..+-.+|++.|..-
T Consensus 47 ~~V~~~qR~~iAe~Fa~AL~~S 68 (80)
T 2juw_A 47 RKVPSESRQAVAEQFAKALAQS 68 (80)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999888764
No 84
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=38.68 E-value=65 Score=20.19 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=28.3
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASLET 53 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~ 53 (100)
.|..++.+++..+.......-..+..++.....
T Consensus 148 ~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~ 180 (214)
T 3tq6_A 148 NWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180 (214)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999888888888876543
No 85
>1t0t_V APC35880; pentamer, icosahedral, structural genomics, protein structure initiative, MCSG, PSI; HET: P33; 1.75A {Geobacillus stearothermophilus} SCOP: d.58.4.10
Probab=37.78 E-value=26 Score=22.88 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=20.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNV 45 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~ 45 (100)
.|+.++..+|...+..+.+.+.+..
T Consensus 24 ~w~~l~~~er~~~~~e~~~~l~~~~ 48 (248)
T 1t0t_V 24 AWKTLPNEEREAAISEFLALVDQWE 48 (248)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999998887776643
No 86
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=37.36 E-value=45 Score=17.23 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=19.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNV 45 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~ 45 (100)
.|..+|.++|..+.......-..+.
T Consensus 45 ~Wk~ls~~eK~~y~~~A~~~k~~y~ 69 (82)
T 1wz6_A 45 WWAVLDPKEKQKYTDMAKEYKDAFM 69 (82)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999988777766555543
No 87
>1cnt_1 CNTF, ciliary neurotrophic factor; cytokine, growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.1
Probab=37.07 E-value=76 Score=19.82 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=26.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASLET 53 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~ 53 (100)
.|+.++..+|..........+..|...+.+--.
T Consensus 63 ~ws~l~~~eRL~~~~~a~~af~~hl~~vledqq 95 (187)
T 1cnt_1 63 QWSELTEAERLQENLQAYRTFHVLLARLLEDQQ 95 (187)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999988888888887766665433
No 88
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=35.84 E-value=53 Score=17.61 Aligned_cols=35 Identities=3% Similarity=-0.070 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHh
Q psy13780 45 VDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAG 79 (100)
Q Consensus 45 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~ 79 (100)
+.+|++.++..+|.+..++..-+....+.+.....
T Consensus 6 k~eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~L~ 40 (93)
T 3rhi_A 6 KTELIKNVAQNAEISQKEATVVVQTVVESITNTLA 40 (93)
T ss_dssp -CHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHh
Confidence 46788888989998888776555555555554443
No 89
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=35.65 E-value=51 Score=18.01 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=21.1
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLAS 50 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~ 50 (100)
.|..++..++..+.......-..+..++..
T Consensus 41 ~Wk~ls~~eK~pye~kA~~dK~rYekEm~~ 70 (91)
T 1l8y_A 41 TWNNMEKKEKLMWIKKAAEDQKRYERELSE 70 (91)
T ss_dssp HHHTTGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788777777777766666666666653
No 90
>1vdh_A Muconolactone isomerase-like protein; beta barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: d.58.4.10
Probab=35.60 E-value=30 Score=22.64 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=20.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHh
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~ 44 (100)
.|+.++..+|...+..+.+.+.+.
T Consensus 28 ~w~~l~~~eR~~~~~e~~~~l~~~ 51 (249)
T 1vdh_A 28 RWFSAPLEAREDAWEELKGLVREW 51 (249)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHH
Confidence 688899999999999888777664
No 91
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=34.62 E-value=54 Score=17.36 Aligned_cols=36 Identities=6% Similarity=-0.175 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 45 VDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 45 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++..+|.+..++..-+....+.+......
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~ 38 (90)
T 1mul_A 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKE 38 (90)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 568888899999988887765555555555544443
No 92
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=33.76 E-value=56 Score=17.27 Aligned_cols=36 Identities=14% Similarity=-0.031 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 45 VDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 45 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++..+|.+..++..-+....+.+......
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~ 38 (90)
T 1b8z_A 3 KKELIDRVAKKAGAKKKDVKLILDTILETITEALAK 38 (90)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 567888888888988877765555555555544433
No 93
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=32.57 E-value=49 Score=17.99 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=20.8
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNV 45 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~ 45 (100)
.|..++.+++..+......+-..|+
T Consensus 58 ~Wk~ls~eeK~pY~~kA~~~K~~h~ 82 (90)
T 2yuk_A 58 LWRKASSQERAPYVQKARDNRAALR 82 (90)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888877666554
No 94
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=32.53 E-value=61 Score=17.33 Aligned_cols=36 Identities=11% Similarity=-0.128 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 45 VDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 45 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++..+|.+..++..-+....+.+......
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~ 38 (94)
T 1p71_A 3 KGELVDAVAEKASVTKKQADAVLTAALETIIEAVSS 38 (94)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 568888899889988887765555555555544443
No 95
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=32.39 E-value=23 Score=18.35 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=17.5
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNV 45 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~ 45 (100)
.|..+|.++|..+.......-..|.
T Consensus 42 ~Wk~ls~eeK~~y~~~A~~~k~~~~ 66 (81)
T 1i11_A 42 RWKAMTNLEKQPYYEEQARLSKQHL 66 (81)
T ss_dssp HHTTSCSGGGHHHHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888766655544443
No 96
>3nn1_A Chlorite dismutase; ferredoxin like fold, chlorite dismutation, periplasmatic, oxidoreductase; HET: HEM; 1.85A {Candidatus nitrospira defluvii} PDB: 3nn2_A* 3nn4_A* 3nn3_A*
Probab=31.70 E-value=41 Score=21.85 Aligned_cols=26 Identities=15% Similarity=0.297 Sum_probs=22.8
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVD 46 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~ 46 (100)
.|..++..+|...+..+.+.+.+..+
T Consensus 27 ~w~~l~~~eR~~~~~e~~~~l~~~~~ 52 (241)
T 3nn1_A 27 DWWDLPGESRVISVAEVKGLVEQWSG 52 (241)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhCCHHHHHHHHHHHHHHHHhccc
Confidence 79999999999999999998887644
No 97
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=31.47 E-value=62 Score=17.13 Aligned_cols=36 Identities=6% Similarity=-0.225 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 45 VDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 45 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++..+|.+..++..-+....+.+......
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~ 38 (90)
T 2o97_B 3 KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKE 38 (90)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 568888888888888887765555555555544443
No 98
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=31.27 E-value=66 Score=17.41 Aligned_cols=36 Identities=14% Similarity=-0.040 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 45 VDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 45 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++..+|.+..++..-|....+.+......
T Consensus 3 k~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L~~ 38 (99)
T 3c4i_A 3 KAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHK 38 (99)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 568888899899988887765555555555544433
No 99
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.74 E-value=60 Score=19.40 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=25.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLAS 50 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~ 50 (100)
.|..++.+++..+.......-..+..++..
T Consensus 139 ~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~ 168 (173)
T 2yrq_A 139 MWNNTAADDKQPYEKKAAKLKEKYEKDIAA 168 (173)
T ss_dssp HHHHSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999888888888877764
No 100
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=29.74 E-value=24 Score=19.12 Aligned_cols=31 Identities=13% Similarity=0.022 Sum_probs=25.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASL 51 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~ 51 (100)
.|..++.++|..+.......-..+..++...
T Consensus 62 ~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y 92 (97)
T 2lhj_A 62 AWNALSDEEKKPYERMSDEDRVRYEREKAEY 92 (97)
T ss_dssp TSSSSCSTTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999988888888878877777654
No 101
>4fxi_A MRNA interferase RELE; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, B-ME on Cys50; HET: CME; 1.80A {Escherichia coli} PDB: 4fxe_D 3kha_A* 4fxh_A* 2kc8_A 2kc9_A 3kiq_y* 3kis_y* 3kiu_y* 3kix_y*
Probab=29.58 E-value=44 Score=18.18 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=18.9
Q ss_pred HHhcCCCccccCCHHHHHHHHHHHHHH
Q psy13780 14 AAFKRGSVWRNLDASGRGKLIYKLAEL 40 (100)
Q Consensus 14 ~a~~~~~~w~~~~~~~R~~~L~~~~~~ 40 (100)
+|.+ .|.+++...+..++..+..+
T Consensus 10 ~A~K---~l~kLd~~~~~ri~~~l~~l 33 (95)
T 4fxi_A 10 RALK---EWRKLGSTVREQLKKKLVEV 33 (95)
T ss_dssp HHHH---HHHHSCHHHHHHHHHHHHHH
T ss_pred HHHH---HHHhCCHHHHHHHHHHHHHH
Confidence 4666 78899999998888777654
No 102
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=28.99 E-value=73 Score=17.20 Aligned_cols=37 Identities=8% Similarity=-0.173 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 44 NVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 44 ~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
...+|+..++..+|.+..++..-+....+.+......
T Consensus 4 ~k~eli~~ia~~~~ls~~~~~~vl~~~~~~i~~~L~~ 40 (99)
T 1owf_A 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALEN 40 (99)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3578889999999988887765555555555544443
No 103
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A
Probab=28.96 E-value=93 Score=19.55 Aligned_cols=31 Identities=10% Similarity=-0.080 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHcCCChHHHH
Q psy13780 34 IYKLAELIDKNVDYLASLETLDNGKPYEDSI 64 (100)
Q Consensus 34 L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~ 64 (100)
+..-++.|...++.+..+++..+|+|..+..
T Consensus 148 i~i~a~el~~~~~~i~~iya~~TG~~~e~I~ 178 (205)
T 4gm2_A 148 IEIQNKEIMNTKKKVIEIISKNTEKDTNVIS 178 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3445566777788889999999999987543
No 104
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.09 E-value=72 Score=16.81 Aligned_cols=47 Identities=17% Similarity=0.006 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy13780 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLE 52 (100)
Q Consensus 3 ~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~ 52 (100)
.++...+...+..-+ .....+-..+..+|.+..++|..-.+....+.
T Consensus 14 ~~lk~~f~~Lr~~vP---~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~ 60 (80)
T 1nlw_A 14 AHLRLSLEKLKGLVP---LGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAV 60 (80)
T ss_dssp HHHHHHHHHHHHSSC---CCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777766 45443334467999999999888777666544
No 105
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.99 E-value=51 Score=19.07 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCHHHHHHH
Q psy13780 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKL 33 (100)
Q Consensus 3 ~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~ 33 (100)
.++..|++.|..++. ++.++|.++
T Consensus 103 ~~~~~Ai~~A~~a~~-------~~~eeR~~~ 126 (134)
T 2gfu_A 103 PEILRAMQRADEALN-------KDKIKRLEL 126 (134)
T ss_dssp HHHHHHHHHHHHHHS-------SCHHHHHTT
T ss_pred HHHHHHHHHHHHHhc-------CCHHHHHHh
Confidence 456777777777775 577777654
No 106
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=27.70 E-value=36 Score=18.25 Aligned_cols=22 Identities=5% Similarity=0.021 Sum_probs=18.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHh
Q psy13780 23 RNLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 23 ~~~~~~~R~~~L~~~~~~l~~~ 44 (100)
...++.+|..+-.+|++.|..-
T Consensus 47 ~~V~~~qR~~iAe~Fa~AL~~S 68 (80)
T 2juz_A 47 TSVPQTQCEALAQAFSNSLINA 68 (80)
T ss_dssp TSSCSTTHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999988764
No 107
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=27.41 E-value=96 Score=18.00 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCH----------HHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDA----------SGRGKLIYKLAELIDKNVDYLASLET 53 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~----------~~R~~~L~~~~~~l~~~~~~l~~~~~ 53 (100)
.+||...+..++..|. .|..+.. .+=..-|.....-|+...++|-+.+.
T Consensus 33 k~EVq~sl~~l~~l~~---~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 33 RGEVQKAVNTARGLYQ---RWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999 9964321 22233355666666777777776665
No 108
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=27.17 E-value=12 Score=20.13 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=17.5
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHh
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKN 44 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~ 44 (100)
.|..++.++|..+.......-..+
T Consensus 58 ~Wk~ls~eeK~~Y~~~A~~~k~~y 81 (90)
T 1wgf_A 58 MWNDLSEKKKAKYKAREAALKAQS 81 (90)
T ss_dssp HHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHH
Confidence 799999999988877665544333
No 109
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=26.46 E-value=51 Score=14.58 Aligned_cols=24 Identities=8% Similarity=0.318 Sum_probs=17.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhHH
Q psy13780 23 RNLDASGRGKLIYKLAELIDKNVD 46 (100)
Q Consensus 23 ~~~~~~~R~~~L~~~~~~l~~~~~ 46 (100)
++-+.++=.+.|.++++.|..+.+
T Consensus 5 ~Dp~~K~l~~cL~~IgDEld~N~E 28 (34)
T 3pk1_B 5 QDASTKKLSECLKRIGDELDSNME 28 (34)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHcccHH
Confidence 345667778889999999988764
No 110
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=26.00 E-value=70 Score=17.34 Aligned_cols=36 Identities=11% Similarity=-0.117 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 45 VDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 45 ~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++..+|.+..++..-|....+.+......
T Consensus 3 k~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L~~ 38 (99)
T 1exe_A 3 KTELIKAIAQDTGLTQVSVSKMLASFEKIITETVAK 38 (99)
T ss_dssp TTHHHHHHHHHHCSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 457888888889988877765555555555544443
No 111
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=25.24 E-value=1e+02 Score=17.57 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=32.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHH
Q psy13780 23 RNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTF 74 (100)
Q Consensus 23 ~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~ 74 (100)
+..+..+|++.+......+..-.++|...-..+.|+.- ...++..+|..+
T Consensus 51 S~~Tr~e~RerIv~eCnavRqaLQdLlseym~~~g~ke--~se~L~~aI~km 100 (111)
T 4ehp_B 51 SSCTRDDRRERIVAECNAVRQALQDLLSEYMGNAGRKE--RSDALNSAIDKM 100 (111)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCC--CCCHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cchhHHHHHHHH
Confidence 45566777777777788888888888777777888721 112455555443
No 112
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=24.26 E-value=49 Score=13.56 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=11.0
Q ss_pred ccCCHHHHHHHHHHHH
Q psy13780 23 RNLDASGRGKLIYKLA 38 (100)
Q Consensus 23 ~~~~~~~R~~~L~~~~ 38 (100)
+..+..+|-++|.++.
T Consensus 4 s~~sL~EkHkILHrLL 19 (26)
T 3bej_E 4 SHSSLTERHKILHRLL 19 (26)
T ss_pred chhhHHHHHHHHHHHH
Confidence 3456778888887763
No 113
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=24.19 E-value=1.2e+02 Score=17.98 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhH
Q psy13780 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNV 45 (100)
Q Consensus 4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~ 45 (100)
.++.++..++.-.. .+.-+++++|..+-..+...+.+..
T Consensus 101 ~~e~~v~r~k~~~q---iy~vLTPEQk~ql~e~~~~r~~~~~ 139 (145)
T 3itf_A 101 QIARQVEMAKVRNQ---MYRLLTPEQQAVLNEKHQQRMEQLR 139 (145)
T ss_dssp HHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 34556666766666 7777999999998877777665543
No 114
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=24.06 E-value=1.4e+02 Score=18.97 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=29.6
Q ss_pred HHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy13780 12 AKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLE 52 (100)
Q Consensus 12 a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~ 52 (100)
++..-. .|..|+.+++..+.......-..+..++....
T Consensus 73 sk~lge---~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~ 110 (238)
T 3tmm_A 73 IRRIAQ---RWRELPDSKKKIYQDAYRAEWQVYKEEISRFK 110 (238)
T ss_dssp HHHHHH---HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445 79999999999999888888888877777643
No 115
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A
Probab=24.03 E-value=1.7e+02 Score=19.59 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=24.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhH-HHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNV-DYLASL 51 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~-~~l~~~ 51 (100)
.|+.++.+||.+++..+.-+....+ ++++.+
T Consensus 10 e~~~Ls~~Er~~yi~Av~~l~~~~~yd~fv~~ 41 (303)
T 3nm8_A 10 NVLHLTDTEKRDFVRTVLILKEKGIYDRYIAW 41 (303)
T ss_dssp BGGGCCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred chHHCCHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 7999999999999999988876543 555544
No 116
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=23.77 E-value=38 Score=18.26 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=14.5
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q psy13780 24 NLDASGRGKLIYKLAELIDK 43 (100)
Q Consensus 24 ~~~~~~R~~~L~~~~~~l~~ 43 (100)
..++.+|..+-.+|++.|..
T Consensus 48 ~V~~~qR~~iAe~Fa~AL~~ 67 (83)
T 2jrx_A 48 SIAPAQRQAIANSFARALQS 67 (83)
T ss_dssp HSCTTSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 45777788888887777654
No 117
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=23.57 E-value=92 Score=20.30 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=31.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHcCCChH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLASL--ETLDNGKPYE 61 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~--~~~e~Gk~~~ 61 (100)
.|-+.|.++|.+-|.+|..-|..-.+.+.-+ +.+++|.+..
T Consensus 142 ~Wl~~p~~~R~~dl~~W~~~l~pl~~al~liL~LlR~s~~~~~ 184 (247)
T 2oez_A 142 YWLHLPIERKKHDANQWQKSLKPLSDALTLWLKLARETGHFKA 184 (247)
T ss_dssp HHHTSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcce
Confidence 5999999999999999999888776655544 4567886643
No 118
>3dtz_A Putative chlorite dismutase TA0507; putatvie chlorite dismutase TA0507 thermoplasma acidophilum, structural genomics, PSI-2; HET: MSE; 1.81A {Thermoplasma acidophilum}
Probab=23.10 E-value=59 Score=21.19 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=18.3
Q ss_pred ccccCCHHHH--HHHHHHHHHHH
Q psy13780 21 VWRNLDASGR--GKLIYKLAELI 41 (100)
Q Consensus 21 ~w~~~~~~~R--~~~L~~~~~~l 41 (100)
.|..++.++| ...+..+.+.+
T Consensus 36 ~W~~l~~~eR~~~~~~~e~~~~~ 58 (244)
T 3dtz_A 36 GKAYSDADTRSLDRMMRSIDEFF 58 (244)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHH
Confidence 7999999999 99988887655
No 119
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE PG4; 1.70A {Silicibacter SP} SCOP: a.152.1.3
Probab=22.94 E-value=70 Score=19.25 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=34.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchh
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNV----DYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCD 82 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~----~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~ 82 (100)
.|......+|.+.+..+++.+.... ++..+.+ .+.|-+..+. .|+...+..+.++.....
T Consensus 113 ~~~~~~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l-~~~G~s~~ei-~el~~~ia~~~~~nr~~~ 176 (191)
T 2pfx_A 113 NYRVAPLDARQRVMLDFAAKMTRASAEIEEADREVL-RSHGFNDRDI-WDIANVTGFFNMTNRVAS 176 (191)
T ss_dssp CGGGSCCCHHHHHHHHHHHHHHHHGGGCCHHHHHHH-HHTTCCHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCHHHHHHHHHHHHHHhCcCCCCHHHHHHH-HHcCCCHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3555455667777778888887653 4444433 3456444332 277777776665555443
No 120
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.16 E-value=1e+02 Score=16.48 Aligned_cols=47 Identities=9% Similarity=0.025 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy13780 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLE 52 (100)
Q Consensus 3 ~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~ 52 (100)
..+...|...+..-+ .+..-+-..+..+|.+..++|..-.+....+.
T Consensus 19 ~~ln~~f~~Lr~~vP---~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~ 65 (88)
T 1nkp_A 19 NELKRSFFALRDQIP---ELENNEKAPKVVILKKATAYILSVQAEEQKLI 65 (88)
T ss_dssp HHHHHHHHHHHTTCG---GGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677766666 55433445678889998888887766665543
No 121
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Mesorhizobium loti}
Probab=21.68 E-value=67 Score=19.25 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=35.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhh
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNV----DYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDK 83 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~----~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~ 83 (100)
.|......+|.+.+.++++.+.... ++..+.+ .+.|-+..+. .|+...+..+.++......
T Consensus 110 ~~~~~~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l-~~~G~s~~ei-~el~~~ia~~~~~nr~~~~ 174 (188)
T 3c1l_A 110 NFRAADLSPRQTAMLEFAVKLTEEPAKIVEADRAAL-RKAGFSDRDI-WDIASTAAFFNMSNRVAAA 174 (188)
T ss_dssp CGGGGCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHH-HHTTCCHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCHHHHHHHHHHHHHHhCcCCCCHHHHHHH-HHcCCCHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3554455667777778998887753 4444433 3456444332 2777777766655554433
No 122
>4h5l_A Nucleoprotein; nucleocapsid protein, N protein, RNA binding, RNP, viral protein; 2.75A {Toscana virus}
Probab=21.30 E-value=1.6e+02 Score=19.31 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHH
Q psy13780 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLA 38 (100)
Q Consensus 2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~ 38 (100)
..++...+.....|.- .=+-++.++|+.+|.++.
T Consensus 195 ~~Ev~~sf~~p~~Aai---~S~F~~~~qR~~~L~~~g 228 (253)
T 4h5l_A 195 ANEVAATFEKPNMAAM---SGRFFTREDKKKLLIAVG 228 (253)
T ss_dssp HHHHHHHHHHHHHHHH---TCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHH---HcCCCCHHHHHHHHHHcC
Confidence 3566666666555554 323478899999988864
No 123
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=21.08 E-value=1e+02 Score=18.66 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=33.4
Q ss_pred cccCCHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchh
Q psy13780 22 WRNLDASGRGKLIYKLAELIDKN----VDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCD 82 (100)
Q Consensus 22 w~~~~~~~R~~~L~~~~~~l~~~----~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~ 82 (100)
|......+|...+..+++.+... .++..+.+ .+.|-+..+. .|+...+..+.++.....
T Consensus 115 ~~~~~~~~~era~l~~a~~lt~~~~~v~d~~~~~l-~~~G~s~~ei-~el~~~ia~~~~~nr~~~ 177 (197)
T 2prr_A 115 YLKADIPPRQRAMLDFALKVCKASHEVNEADFEAL-REHGFTDEDA-WDIAAITAFFGLSNRMAN 177 (197)
T ss_dssp GGGSSCCHHHHHHHHHHHHHHHHGGGCCHHHHHHH-HTTTCCHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHHHhCcCCCCHHHHHHH-HHcCCCHHHH-HHHHHHHHHHHHHHHHHH
Confidence 54434556667777899888764 33333333 3445444322 277777776665555443
No 124
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=20.97 E-value=85 Score=15.67 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=19.3
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780 21 VWRNLDASGRGKLIYKLAELIDKNVDYLAS 50 (100)
Q Consensus 21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~ 50 (100)
.|..++. |..+.......-..+..++..
T Consensus 41 ~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~ 68 (73)
T 3nm9_A 41 LWRAMKD--KSEWEAKAAKAKDDYDRAVKE 68 (73)
T ss_dssp HHHHCSC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCc--hHHHHHHHHHHHHHHHHHHHH
Confidence 6877775 777777766666677766654
No 125
>1srq_A RAP1GAP, GTPase-activating protein 1; mixed alpha-beta, signaling protein; 2.90A {Homo sapiens} SCOP: e.55.1.1 PDB: 3brw_A*
Probab=20.85 E-value=1e+02 Score=21.07 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHH
Q psy13780 6 DKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLA 49 (100)
Q Consensus 6 ~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~ 49 (100)
..+|.+.+.++..+ .++.+-...|..+|..+.+-+..+...+.
T Consensus 293 ~klINae~a~~~s~-~f~~~~~RtR~~ll~~i~~~~~~~~~~~~ 335 (341)
T 1srq_A 293 TKLINAEYACYKAE-KFAKLEERTRAALLETLYEELHIHSQSMM 335 (341)
T ss_dssp HHHHHHHHHHTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCc-cccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677777766511 45556667777888888888887766554
No 126
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=20.67 E-value=1e+02 Score=16.11 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHH
Q psy13780 30 RGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63 (100)
Q Consensus 30 R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a 63 (100)
...+|..|.++|+.++--..+-++.+.|-...++
T Consensus 5 ~~~ll~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~ 38 (72)
T 1wi9_A 5 SSGFLTEFINYIKKSKVVLLEDLAFQMGLRTQDA 38 (72)
T ss_dssp SCCHHHHHHHHHHHCSEECHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHHHHHcCeeeHHHHHHHhCCChHHH
Confidence 3457889999999998777778888999776654
No 127
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=20.61 E-value=1.1e+02 Score=16.23 Aligned_cols=36 Identities=6% Similarity=-0.173 Sum_probs=24.4
Q ss_pred HHHHHHHHHHH-cCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780 45 VDYLASLETLD-NGKPYEDSIFDLGCASDTFRYFAGW 80 (100)
Q Consensus 45 ~~~l~~~~~~e-~Gk~~~~a~~ev~~~~~~~~~~a~~ 80 (100)
+.+|++.++.. +|.+..++..-+....+.+......
T Consensus 3 k~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~~L~~ 39 (94)
T 1owf_B 3 KSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQ 39 (94)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 56888888888 5888887765555555555544443
No 128
>1u2c_A Dystroglycan; IG-like domain, S6 like fold, protein binding; 2.30A {Mus musculus} SCOP: b.1.6.2 d.272.1.1
Probab=20.15 E-value=98 Score=20.23 Aligned_cols=25 Identities=8% Similarity=0.242 Sum_probs=19.9
Q ss_pred cccCCHHHHHHHHHHHHHHHHHhHH
Q psy13780 22 WRNLDASGRGKLIYKLAELIDKNVD 46 (100)
Q Consensus 22 w~~~~~~~R~~~L~~~~~~l~~~~~ 46 (100)
-.++++.+|..+|.+++..+.-+.+
T Consensus 140 l~kl~p~~Rv~Ll~~~~~f~~v~~~ 164 (246)
T 1u2c_A 140 LTKMTPKQRIDLLNRMQSFSEVELH 164 (246)
T ss_dssp GGGSCHHHHHHHHHHHHHHHCSCGG
T ss_pred chhCCHHHHHHHHHHHHHHhccchh
Confidence 3578999999999999887665443
Done!