RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13780
(100 letters)
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 147 bits (372), Expect = 1e-43
Identities = 56/93 (60%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
ADVDKAV++A+AAFK GS WR +DAS RG+L+ KLA+LI+++ YLASLETLDNGKP+
Sbjct: 44 ADVDKAVKAARAAFKLGSPWRTMDASERGRLLNKLADLIERDRAYLASLETLDNGKPFSK 103
Query: 63 SIF-DLGCASDTFRYFAGWCDKIEGSTIPSESK 94
S DL A RY+AGW DKI G TIP +
Sbjct: 104 SYLVDLPGAIKVLRYYAGWADKIHGKTIPMDGD 136
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 129 bits (327), Expect = 4e-37
Identities = 47/93 (50%), Positives = 66/93 (70%), Gaps = 2/93 (2%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DVD AV++A+AAF+ G WR +D RG+L+ KLA+LI+++ D LA+LE+LDNGKP E+
Sbjct: 41 EDVDAAVKAARAAFETGW-WRKMDPRERGRLLNKLADLIERDRDELAALESLDNGKPLEE 99
Query: 63 SI-FDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
S D+ + RY+AGW DKI+G TIP +
Sbjct: 100 SAKGDVALSIKCLRYYAGWADKIQGKTIPIDGN 132
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 116 bits (292), Expect = 3e-32
Identities = 44/94 (46%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+ADVD+AV +A+AAF G WR L + RGKL+ +LA+LI+ N + LA LET DNGK
Sbjct: 18 AADVDRAVAAARAAF-EGGAWRKLTPTERGKLLRRLADLIEANAEELAELETRDNGKLIR 76
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
++ + ++ +RY+AG DKIEG+ IP + D
Sbjct: 77 ETRAQVRYLAEWYRYYAGLADKIEGAVIPVDKGD 110
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 107 bits (271), Expect = 3e-29
Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DVD AV +A+AAFK W S R ++ K A+L+++ D LA LETL+ GKP +
Sbjct: 29 EDVDAAVAAARAAFK---AWAKTPPSERAAILLKAADLLEERRDELAELETLETGKPLAE 85
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
+ ++ A DT RY+AG K+EG T+PS+
Sbjct: 86 ARGEVPRAIDTLRYYAGLARKLEGETLPSD 115
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 107 bits (270), Expect = 3e-29
Identities = 46/89 (51%), Positives = 61/89 (68%), Gaps = 4/89 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DVD AV +A+AAF+ W +D + RG+++++LAELI N D LA LE+LD GKP
Sbjct: 19 EDVDAAVAAARAAFEA---WSAMDPAERGRILWRLAELILANADELARLESLDTGKPIRA 75
Query: 63 S-IFDLGCASDTFRYFAGWCDKIEGSTIP 90
+ D+ A+DTFRY+AGW DKIEG IP
Sbjct: 76 ARRLDVPRAADTFRYYAGWADKIEGEVIP 104
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 107 bits (269), Expect = 5e-29
Identities = 44/93 (47%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE- 61
DVDKAV++A+ AF+ S W + RG+L+ KLA+L++KN D LA++E LD+GKPY
Sbjct: 45 EDVDKAVKAARKAFE--SWWSKVTGEERGELLDKLADLVEKNRDLLAAIEALDSGKPYHS 102
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
+++ DL RY+AGW DKI+G TIP+
Sbjct: 103 NALGDLDEIIAVIRYYAGWADKIQGKTIPTSPN 135
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 101 bits (254), Expect = 6e-27
Identities = 43/89 (48%), Positives = 66/89 (74%), Gaps = 2/89 (2%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DVD+AV +AK AF+ G W ++A RG+L+Y+LA+L++++ + LA++E+LD+G Y
Sbjct: 43 EDVDRAVAAAKEAFENGE-WGKMNARDRGRLMYRLADLMEEHQEELATIESLDSGAVYTL 101
Query: 63 SI-FDLGCASDTFRYFAGWCDKIEGSTIP 90
++ +G + TFRYFAGWCDKI+G TIP
Sbjct: 102 ALKTHVGMSIQTFRYFAGWCDKIQGKTIP 130
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 101 bits (254), Expect = 7e-27
Identities = 40/92 (43%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+ DVD+AV++A+ AF G W + R +++ + A+L++K+ D LA+LET DNGKPYE
Sbjct: 40 AEDVDRAVKAARKAFDEGP-WPRMTGYERSRILLRFADLLEKHADELAALETWDNGKPYE 98
Query: 62 DS-IFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
+ ++ A+ FRY+AGW DKI G T+P++
Sbjct: 99 QARYAEVPLAARLFRYYAGWADKIHGMTLPAD 130
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 101 bits (252), Expect = 1e-26
Identities = 44/93 (47%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
ADVD AVE A AAF+ + S RG+ + KLA+L+++N+DYLAS+E LDNGK +
Sbjct: 44 ADVDIAVEVAHAAFE-TDWGLKVSGSKRGRCLSKLADLMERNLDYLASIEALDNGKTFGT 102
Query: 63 SI-FDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
+ D+ ++DTFRY+ GW DKI G I ++ K
Sbjct: 103 AKRVDVQASADTFRYYGGWADKIHGQVIETDIK 135
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to
mention a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a
number of highly conserved residues necessary for
catalysis and cofactor binding and they include such
proteins as retinal dehydrogenase,
10-formyltetrahydrofolate dehydrogenase,
non-phosphorylating glyceraldehyde 3-phosphate
dehydrogenase, delta(1)-pyrroline-5-carboxylate
dehydrogenases, alpha-ketoglutaric semialdehyde
dehydrogenase, alpha-aminoadipic semialdehyde
dehydrogenase, coniferyl aldehyde dehydrogenase and
succinate-semialdehyde dehydrogenase. Included in this
larger group are all human, Arabidopsis, Tortula,
fungal, protozoan, and Drosophila ALDHs identified in
families ALDH1 through ALDH22 with the exception of
families ALDH18, ALDH19, and ALDH20 which are present
in the ALDH-like group.
Length = 432
Score = 97.3 bits (243), Expect = 2e-25
Identities = 37/90 (41%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
Query: 6 DKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF 65
D AV +A+AAFK W L + R ++ KLA+L+++ + LA+LETL+ GKP E+++
Sbjct: 1 DAAVAAARAAFKA---WAALPPAERAAILRKLADLLEERREELAALETLETGKPIEEALG 57
Query: 66 DLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
++ A+DTFRY+AG ++ G IPS
Sbjct: 58 EVARAADTFRYYAGLARRLHGEVIPSPDPG 87
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 93.1 bits (232), Expect = 8e-24
Identities = 39/90 (43%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY 60
+ADVD+AV++A+ AF+ G W L + RG+L+ ++A LI ++ D LA LE+LD GKP
Sbjct: 17 GAADVDRAVQAARRAFESG--WLRLSPAERGRLLLRIARLIREHADELARLESLDTGKPL 74
Query: 61 EDSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
+ D+ A+ F Y+ G DK+ G TIP
Sbjct: 75 TQARADVEAAARYFEYYGGAADKLHGETIP 104
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 92.4 bits (230), Expect = 2e-23
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DVD AV +A+AAF+ W L A R ++ ++A+L++ + LA+L TL+ GKP +
Sbjct: 36 EDVDAAVAAARAAFEA---WSRLSAEERAAILRRIADLLEARAEELAALITLETGKPISE 92
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPS 91
+ ++ A+D RY+A ++EG TIP+
Sbjct: 93 ARGEIARAADFIRYYAEEARRLEGETIPT 121
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 90.3 bits (224), Expect = 9e-23
Identities = 41/91 (45%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
DV++AV +A+ AF G W + A R +++ + A+L++K+ D LA+LET DNGKPYE S
Sbjct: 96 DVNRAVAAARKAFDEGP-WPKMTAYERSRILLRFADLLEKHNDELAALETWDNGKPYEQS 154
Query: 64 IF-DLGCASDTFRYFAGWCDKIEGSTIPSES 93
+L + FRY+AGW DKI G T+P++
Sbjct: 155 AKAELPMFARLFRYYAGWADKIHGLTVPADG 185
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 90.1 bits (224), Expect = 1e-22
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
D +A+ +A+ AF G W +L A R L++++A+ I ++ + LA LETL+ GK +
Sbjct: 35 EDAKRAIAAARRAFDSGE-WPHLPAQERAALLFRIADKIREDAEELARLETLNTGKTLRE 93
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPS 91
S D+ ++ FRY+AG K G
Sbjct: 94 SEIDIDDVANCFRYYAGLATKETGEVYDV 122
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 89.2 bits (222), Expect = 2e-22
Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+ADVD+AV +A+ AF+ G VW L + R ++ +LA+LI+ + D LA LETLD GKP
Sbjct: 23 AADVDRAVAAARRAFESG-VWSRLSPAERKAVLLRLADLIEAHRDELALLETLDMGKPIS 81
Query: 62 DSI-FDLGCASDTFRYFAGWCDKIEGSTIPSES 93
D++ D+ A++TFR++A DK+ G P+
Sbjct: 82 DALAVDVPSAANTFRWYAEAIDKVYGEVAPTGP 114
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form
an oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
The ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 87.3 bits (217), Expect = 7e-22
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 10 ESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGC 69
+A+AAFK W L + R ++ K+A+L+++ + LA+LETL+ GKP E+++ ++
Sbjct: 1 AAARAAFKA---WAALPPAERAAILRKIADLLEERREELAALETLETGKPIEEALGEVAR 57
Query: 70 ASDTFRYFAGWCDKIEGSTIPSESKD 95
A DTFRY AG DK+ G +PS
Sbjct: 58 AIDTFRYAAGLADKLGGPELPSPDPG 83
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 82.1 bits (204), Expect = 6e-20
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+AD D A+++A AAFK WR A R ++ + A+LI + + LA L TL+ GKP
Sbjct: 18 AADADAAIDAAAAAFK---TWRKTTARERAAILRRWADLIRERAEDLARLLTLEQGKPLA 74
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
++ ++ A+ +FA +I G TIPS +
Sbjct: 75 EARGEVDYAASFLEWFAEEARRIYGRTIPSPAPGK 109
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 81.2 bits (201), Expect = 2e-19
Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-E 61
DVD AV++A AFK W + R ++ K+A+ I++N++ LA ETLDNGKP E
Sbjct: 38 EDVDLAVDAAHEAFKT---WGKTSVAERANILNKIADRIEENLELLAVAETLDNGKPIRE 94
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGS 87
D+ A D FRYFAG EGS
Sbjct: 95 TLAADIPLAIDHFRYFAGVIRAQEGS 120
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 80.7 bits (200), Expect = 2e-19
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
A+VD AV +AK AF W + + R ++++K+A+LI+ D LA LE+LD GKP
Sbjct: 19 AEVDAAVAAAKEAFPG---WSRMSPAERARILHKVADLIEARADELALLESLDTGKPITL 75
Query: 63 -SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
D+ A+ FR+FA + +++G + P +
Sbjct: 76 ARTRDIPRAAANFRFFADYILQLDGESYPQD 106
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 79.4 bits (196), Expect = 7e-19
Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-E 61
ADVD+AV++A+ AFK WR + R ++ K+A++ID+N + LA +ETLDNGKP E
Sbjct: 38 ADVDRAVKAAQEAFKT---WRKTTVAERANILNKIADIIDENKELLAMVETLDNGKPIRE 94
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGS 87
D+ A+D FRYFAG EGS
Sbjct: 95 TRAVDIPLAADHFRYFAGVIRAEEGS 120
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 79.3 bits (196), Expect = 8e-19
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DVD AV+SAKAA K W RG+++ K A+L+ + D +A LET+DNGKP E+
Sbjct: 19 EDVDLAVKSAKAAQK---EWSATSGMERGRILRKAADLLRERNDEIARLETIDNGKPIEE 75
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIP 90
+ D+ ++D Y+AG + G +P
Sbjct: 76 ARVDIDSSADCLEYYAGLAPTLSGEHVP 103
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 78.3 bits (193), Expect = 1e-18
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DV++A+ +A+ A W + RG+++ + A+LI + + LA LETLD GK ++
Sbjct: 35 EDVERAIAAARRAQGE---WAAMSPMERGRILRRAADLIRERNEELAKLETLDTGKTLQE 91
Query: 63 SIF-DLGCASDTFRYFAGWCDKIEGSTIPS 91
+I D+ +D F +FAG + G IP
Sbjct: 92 TIVADMDSGADVFEFFAGLAPALNGEIIPL 121
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 78.3 bits (193), Expect = 2e-18
Identities = 37/95 (38%), Positives = 61/95 (64%), Gaps = 4/95 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
ADVD+A ++AK AFKR W L A+ R + ++K+A+LI+++ D +A LE LD G+P
Sbjct: 38 ADVDRAAKAAKEAFKR---WAELKAAERKRYLHKIADLIEQHADEIAVLECLDCGQPLRQ 94
Query: 63 SIFDLGCASDTFRYFAGWC-DKIEGSTIPSESKDN 96
+ + A++ FR+FA C + ++G T P ++ N
Sbjct: 95 TRQQVIRAAENFRFFADKCEEAMDGRTYPVDTHLN 129
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 78.3 bits (193), Expect = 2e-18
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
ADVD AV SA AF S W + RG+++ +LA+LI+++ + LA LETL +GK
Sbjct: 37 ADVDAAVASAWRAFV--SAWAKTTPAERGRILLRLADLIEQHGEELAQLETLCSGKSIHL 94
Query: 63 S-IFDLGCASDTFRYFAGWCDKIEGSTI-PS 91
S F++G +++ RYFAGW KI G T+ PS
Sbjct: 95 SRAFEVGQSANFLRYFAGWATKINGETLAPS 125
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 77.7 bits (192), Expect = 3e-18
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+ D D+AV++A+AA K W L A R + KLA+LI +N D LA L + GK
Sbjct: 34 AEDADRAVDAAEAAQKA---WERLPAIERAAYLRKLADLIRENADELAKLIVEEQGKTLS 90
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIPSE-SKDNI 97
+ ++ +D Y A W +IEG IPS+ +NI
Sbjct: 91 LARVEVEFTADYIDYMAEWARRIEGEIIPSDRPNENI 127
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 76.0 bits (187), Expect = 9e-18
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGK-PYE 61
DVD AV++A+ AF G W + RG+++ K A+LI+++++ LA+L+T+D GK
Sbjct: 58 EDVDLAVKAAREAFDHGP-WPRMSGFERGRIMMKFADLIEEHIEELAALDTIDAGKLFAL 116
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTI 89
D+ A+ RY+AG DKI G T+
Sbjct: 117 GKAVDIPAAAGLLRYYAGAADKIHGETL 144
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 73.8 bits (182), Expect = 6e-17
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-E 61
ADV+ AV SAK K +W + A R +++ + +++ + D LA+LETLD GKP E
Sbjct: 44 ADVEAAVASAKQGQK---IWAAMTAMERSRILRRAVDILRERNDELAALETLDTGKPIQE 100
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
S+ D+ +D Y+AG +EG IP
Sbjct: 101 TSVVDIVTGADVLEYYAGLAPALEGEQIP 129
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 73.5 bits (181), Expect = 9e-17
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
ADVD AV +A AAF WR + R K + KLA+ I++N + LA+LE+ + GKP
Sbjct: 19 ADVDAAVAAAHAAFPS---WRRTTPAERSKALLKLADAIEENAEELAALESRNTGKPLHL 75
Query: 63 SI-FDLGCASDTFRYFAGWCDKIEGS 87
+L A D FR+FAG +EG
Sbjct: 76 VRDDELPGAVDNFRFFAGAARTLEGP 101
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 72.6 bits (179), Expect = 1e-16
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
A VD AV +A AAF W R + + KLA+ I++N D A LE+L+ GKP
Sbjct: 39 AQVDAAVAAADAAFPE---WSQTTPKERAEALLKLADAIEENADEFARLESLNCGKPLHL 95
Query: 63 SI-FDLGCASDTFRYFAGWCDKIEGS 87
++ ++ D FR+FAG +EG
Sbjct: 96 ALNDEIPAIVDVFRFFAGAARCLEGK 121
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 72.6 bits (179), Expect = 2e-16
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
A +D+AV +AKAAF W R + +A+ I+ N + LA L TL+ GKP +
Sbjct: 19 AQLDQAVAAAKAAFPG---WSATPLEERRAALLAIADAIEANAEELARLLTLEQGKPLAE 75
Query: 63 SIFDLGCASDTFRYFAG 79
+ F++G A RY A
Sbjct: 76 AQFEVGGAVAWLRYTAS 92
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 72.0 bits (177), Expect = 3e-16
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
DVD AV +A+ AF +G W + + R ++ K+A+LI + LA +ETL++GKP +
Sbjct: 20 DVDAAVAAARKAFDKGP-WPRMSGAERAAVLLKVADLIRARRERLALIETLESGKPISQA 78
Query: 64 IFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIG 98
++ A+D +RY A + G +S +N+G
Sbjct: 79 RGEIEGAADLWRYAASLARTLHG-----DSYNNLG 108
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 71.5 bits (176), Expect = 4e-16
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
D D A+ +A AAF WR R ++ K + ++ + LA L T + GK +
Sbjct: 37 EDADAAIAAAAAAFPA---WRRTSPEARADILDKAGDELEARKEELARLLTREEGKTLPE 93
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
+ ++ A FRY+AG ++ G T+PS
Sbjct: 94 ARGEVTRAGQIFRYYAGEALRLSGETLPSTRPG 126
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 70.9 bits (174), Expect = 7e-16
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-E 61
D++ A+++A AA + W + R ++ K+A+ ++ N++ LA ET DNGKP E
Sbjct: 38 EDIELALDAAHAAKEA---WGKTSVAERANILNKIADRMEANLEMLAVAETWDNGKPVRE 94
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGS 87
D+ A D FRYFAG EGS
Sbjct: 95 TLAADIPLAIDHFRYFAGCIRAQEGS 120
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 68.5 bits (168), Expect = 4e-15
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+ DVD AV +A+ AF R W+ + R K + +AE + + + LA LE DNGKP +
Sbjct: 18 AEDVDAAVRAARRAFPR---WKKTTGAERAKYLRAIAEGVRERREELAELEARDNGKPLD 74
Query: 62 DSIFDLGCASDTFRYFAGWCDKIE---GSTIPSESKD 95
++ +D+ + F Y+A ++++ +P S+D
Sbjct: 75 EAAWDVDDVAGCFEYYADLAEQLDAKAERAVPLPSED 111
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 68.2 bits (167), Expect = 5e-15
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 2 SADVDKAVESAKAAFKR--GSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP 59
+ DVD AVE+A+ AFKR G W + R K + +A I + LA LETLD GKP
Sbjct: 44 AEDVDAAVEAARKAFKRNKGKDWARTTGAVRAKYLRAIAAKITERKSELAKLETLDCGKP 103
Query: 60 YEDSIFDLGCASDTFRYFAGWCDKIEG 86
+++ +D+ + F Y+A + ++
Sbjct: 104 LDEAAWDMDDVAGCFEYYADLAEALDA 130
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 68.2 bits (167), Expect = 6e-15
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+ADVD+AV +AKAAF W A RGKL+ ++A+ ++ + LA L L+ G
Sbjct: 18 AADVDRAVAAAKAAFPE---WAATPARERGKLLARIADALEARSEELARLLALETGNALR 74
Query: 62 -DSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
+ + +D FRYF G +++G T+P
Sbjct: 75 TQARPEAAVLADLFRYFGGLAGELKGETLP 104
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 67.6 bits (165), Expect = 1e-14
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
S D+D+AV +A+ F+RG W + R ++ KLA+L++ + + LA LETLD GKP
Sbjct: 56 SVDIDRAVSAARGVFERG-DWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIR 114
Query: 62 DSIF-DLGCASDTFRYFAGWCDKIEGSTIPSES 93
S+ D+ A+ R++A DK+ G + S
Sbjct: 115 HSLRDDIPGAARAIRWYAEAIDKVYGEVATTSS 147
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 67.0 bits (164), Expect = 1e-14
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
+V +A+E A+ A V NL A R K++ K+AELI++ + LA L T++ GKP + S
Sbjct: 22 EVREAIEVAEKAK---DVMSNLPAYKRYKILMKVAELIERRKEELAKLLTIEVGKPIKQS 78
Query: 64 IFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
++ F+ A + G TIP ++ +
Sbjct: 79 RVEVERTIRLFKLAAEEAKVLRGETIPVDAYEY 111
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 66.2 bits (162), Expect = 3e-14
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+ADVD+AV +A+AAF WR R +++ +LA + ++ + LA ++ LD G P
Sbjct: 18 AADVDRAVAAARAAFPE---WRATTPLERARMLRELATRLREHAEELALIDALDCGNPVS 74
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIPS 91
+ D+ A+ YFAG +++G TIP
Sbjct: 75 AMLGDVMVAAALLDYFAGLVTELKGETIPV 104
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 65.1 bits (159), Expect = 7e-14
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+DVD AVE+A+ AF WR + A R + +++ AEL+ K + LA L T + GKP +
Sbjct: 37 SDVDAAVEAAREAFP---EWRKVPAPRRAEYLFRAAELLKKRKEELARLVTREMGKPLAE 93
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
D+ A D +Y AG ++ G T+PSE +
Sbjct: 94 GRGDVQEAIDMAQYAAGEGRRLFGETVPSELPN 126
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 64.3 bits (157), Expect = 1e-13
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
DVD AV +A+ AF+ W L R + +Y++A I K+ A LE+LDNGKP
Sbjct: 58 EEDVDAAVAAARTAFES---WSALPGHVRARHLYRIARHIQKHQRLFAVLESLDNGKPIR 114
Query: 62 DSI-FDLGCASDTFRYFAGWCDKIE 85
+S D+ + F + AGW ++
Sbjct: 115 ESRDCDIPLVARHFYHHAGWAQLLD 139
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 62.2 bits (152), Expect = 8e-13
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DV+ AV +A+ AFK WR + A RG+++ ++ E + K + L L +L+ GK +
Sbjct: 35 EDVEAAVAAAREAFK---EWRKVPAPRRGEIVRQIGEALRKKKEALGRLVSLEMGKILPE 91
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
+ ++ D Y G + G TIPSE
Sbjct: 92 GLGEVQEMIDICDYAVGLSRMLYGLTIPSE 121
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 62.1 bits (152), Expect = 8e-13
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+ +VD AV +AKAAF W R ++++K +L+++N+D LA L TL++GK
Sbjct: 37 AEEVDAAVAAAKAAFPA---WSATPVLKRQQVMFKFRQLLEENLDELARLITLEHGKTLA 93
Query: 62 DSIFDLG 68
D+ D+
Sbjct: 94 DARGDVL 100
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 62.1 bits (151), Expect = 9e-13
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+ + A+ +A AFK WR A R L+ K L+ +N D LA L TL+NGKP ++
Sbjct: 19 DETEAAIRAAYEAFKT---WRATTAKERSSLLRKWYNLMMENKDDLARLITLENGKPLKE 75
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
+ ++ A+ +FA ++ G TIPS D
Sbjct: 76 AKGEILYAASFLEWFAEEAKRVYGDTIPSPQSDK 109
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 59.7 bits (145), Expect = 6e-12
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
D ++A+ +A AF W S R +++ K AE++++ D L L + G Y
Sbjct: 21 QDAERAIAAAYDAFPA---WAATTPSERERILLKAAEIMERRADDLIDLLIDEGGSTYGK 77
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNI 97
+ F+ + R AG C ++ G T+PS+S +
Sbjct: 78 AWFETTFTPELLRAAAGECRRVRGETLPSDSPGTV 112
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 57.6 bits (140), Expect = 4e-11
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+ + AV++A+AAF WR R +L+ + A L+ + LA+ L+ GK + +
Sbjct: 69 EEAEAAVQAARAAFPT---WRRTPPEERARLLLRAAALLRRRRFELAAWMVLEVGKNWAE 125
Query: 63 SIFDLGCASDTFRYFA 78
+ D+ A D Y+A
Sbjct: 126 ADADVAEAIDFLEYYA 141
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 55.5 bits (134), Expect = 2e-10
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
A+ + A+ SA AF W L AS R K++ + +LI N + LA L TL+ GKP ++
Sbjct: 62 AETNDAIASAHDAFP---SWSKLTASERSKILRRWYDLIIANKEDLAQLMTLEQGKPLKE 118
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
+I ++ + YFA ++ G IPS D
Sbjct: 119 AIGEVAYGASFLEYFAEEAKRVYGDIIPSPFPD 151
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional
link between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 54.4 bits (132), Expect = 4e-10
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI 64
++ A++ A AAF WR + R L+ KLA+L+ + D LA L TL+ GKP ++
Sbjct: 1 IEAALDRAHAAFLA---WRKTSFAERAALLRKLADLLRERKDELARLITLEMGKPIAEAR 57
Query: 65 FDLGCASDTFRYFA 78
++ + RY+A
Sbjct: 58 AEVEKCAWICRYYA 71
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene
catabolic pathway of Pseudomonas strain C18 and other
similar sequences are present in this CD.
Length = 432
Score = 54.1 bits (131), Expect = 5e-10
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
D D+AVE+A AAF W S R ++ K A+L++ D + G +
Sbjct: 1 DADQAVEAAAAAFPA---WSKTPPSERRDILLKAADLLESRRDEFIEAMMEETGATAAWA 57
Query: 64 IFDLGCASDTFRYFAGWCDKIEGSTIPS 91
F++ A+ R A +I G +IPS
Sbjct: 58 GFNVDLAAGMLREAASLITQIIGGSIPS 85
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 54.1 bits (131), Expect = 5e-10
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
ADVD AV +A+ AF G W L + R ++ +LA+ ++ D LA L T +NG P
Sbjct: 36 ADVDAAVAAARRAFDNG-PWPRLSPAERAAVLRRLADALEARADELARLWTAENGMPISW 94
Query: 63 S-IFDLGCASDTFRYFAG 79
S + RY+A
Sbjct: 95 SRRAQGPGPAALLRYYAA 112
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 53.9 bits (129), Expect = 7e-10
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
VD AV +A AAF W R + + KLA++I++N A LE+ + GKP
Sbjct: 38 EQVDAAVRAADAAFAE---WGQTTPKARAECLLKLADVIEENAQVFAELESRNCGKPLHS 94
Query: 63 SIFD-LGCASDTFRYFAG 79
D + D FR+FAG
Sbjct: 95 VFNDEIPAIVDVFRFFAG 112
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this
CD is the aldehyde dehydrogenase (PsfA, locus ACA09737)
of Pseudomonas putida involved in furoic acid
metabolism. Transcription of psfA was induced in
response to 2-furoic acid, furfuryl alcohol, and
furfural.
Length = 455
Score = 53.1 bits (128), Expect = 1e-09
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
A+ + A+ +A+ AF W + D R +++ +LA+ + N + LA L L+NGK +
Sbjct: 19 AEAEAAIAAARRAFDETD-WAH-DPRLRARVLLELADAFEANAERLARLLALENGKILGE 76
Query: 63 SIFDLGCASDTFRYFAG 79
+ F++ A RY+AG
Sbjct: 77 ARFEISGAISELRYYAG 93
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 51.3 bits (123), Expect = 5e-09
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
AD ++A+ +A+A + R L R ++ + A+L+ K + A + + GKP +D
Sbjct: 21 ADAEEALATARAGAEN---RRALPPHERMAILERAADLLKKRAEEFAKIIACEGGKPIKD 77
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPS 91
+ ++ A DT R A ++I G IP
Sbjct: 78 ARVEVDRAIDTLRLAAEEAERIRGEEIPL 106
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 49.6 bits (119), Expect = 2e-08
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
D+++A+ +A AF+ R L A R ++ +++ + LA L+ GKP +
Sbjct: 20 PDDIEEAIAAAVKAFRP---MRALPAHRRAAILLHCVARLEERFEELAETIVLEAGKPIK 76
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
D+ ++ A DTFR A +I G +P
Sbjct: 77 DARGEVARAIDTFRIAAEEATRIYGEVLP 105
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 49.3 bits (118), Expect = 3e-08
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP-YE 61
A+VD AV +A+AA K W + + R L+Y +A+ I++ D + E D GKP
Sbjct: 36 AEVDAAVAAARAALKGP--WGKMTVAERADLLYAVADEIERRFDDFLAAEVADTGKPRSL 93
Query: 62 DSIFDLGCASDTFRYFA 78
S D+ + FR FA
Sbjct: 94 ASHLDIPRGAANFRVFA 110
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 48.4 bits (115), Expect = 6e-08
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+ + A+++A A WR L A R ++ + L+ ++ D LA L TL+ GKP
Sbjct: 47 ADETRAAIDAANRAL---PAWRALTAKERANILRRWFNLMMEHQDDLARLMTLEQGKPLA 103
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
++ ++ A+ +FA +I G TIP D
Sbjct: 104 EAKGEISYAASFIEWFAEEGKRIYGDTIPGHQAD 137
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 48.0 bits (115), Expect = 7e-08
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
DV+KA+ +AK K ++L A R +++ + A+L+++ + A L+ GKP +
Sbjct: 20 EEDVEKAIAAAKEGAKEM---KSLPAYERAEILERAAQLLEERREEFARTIALEAGKPIK 76
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
D+ ++ A +T R A ++ G TIP
Sbjct: 77 DARKEVDRAIETLRLSAEEAKRLAGETIP 105
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 47.5 bits (114), Expect = 1e-07
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASL---ETLDNGKPY 60
DVD+A +A AA K W R ++ K AE++++ D +A E+ G
Sbjct: 1 DVDRAYAAAAAAQKA---WAATPPQERAAILRKAAEILEERRDEIADWLIRES---GSTR 54
Query: 61 EDSIFDLGCASDTFRYFAGWCDKIEGSTIPSES 93
+ F++G A R AG + EG +PS+
Sbjct: 55 PKAAFEVGAAIAILREAAGLPRRPEGEILPSDV 87
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 47.5 bits (114), Expect = 1e-07
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+ V++A+ +A+AAF W R ++ + A+L++ N L +L + GK +
Sbjct: 584 AEQVEQALAAARAAFPA---WSRTPVEERAAILERAADLLEANRAELIALCVREAGKTLQ 640
Query: 62 DSIFDLGCASDTFRYFA 78
D+I ++ A D RY+A
Sbjct: 641 DAIAEVREAVDFCRYYA 657
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 47.2 bits (113), Expect = 1e-07
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
D + +++A+ AFK WR++ A RG+++ ++ + + K + L L +L+ GK +
Sbjct: 34 EDYESTIKAAQEAFK---EWRDVPAPKRGEIVRQIGDALRKKKEALGKLVSLEMGKILPE 90
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
+ ++ D + G ++ G TIPSE
Sbjct: 91 GLGEVQEMIDICDFAVGLSRQLYGLTIPSE 120
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 46.4 bits (110), Expect = 3e-07
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
A+ + A+E+A AAFK W++ R +L+ K A+L+ + L + T + GK + +
Sbjct: 55 AEAEAALEAAWAAFKT---WKDWPQEDRARLLLKAADLLRRRRRELIATLTYEVGKNWVE 111
Query: 63 SIFDLGCASDTFRYFAGWCDKIEG 86
+I D+ A D RY+A ++
Sbjct: 112 AIDDVAEAIDFIRYYARAALRLRY 135
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas
sp. strain 16a and other similar sequences are present
in this CD. DDALDH converts
4,4'-diapolycopene-dialdehyde into
4,4'-diapolycopene-diacid.
Length = 453
Score = 45.7 bits (109), Expect = 4e-07
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
A+V AV A+AA + W L GR + + + + + D LA L + GKP D
Sbjct: 18 AEVAAAVARARAAQR---AWAALGVEGRAQRLLRWKRALADHADELAELLHAETGKPRAD 74
Query: 63 SIFDLGCASDTFRYFA 78
+ ++ A + + A
Sbjct: 75 AGLEVLLALEAIDWAA 90
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 45.3 bits (108), Expect = 6e-07
Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 1 MSAD-VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP 59
+SA + +A E+A A + W + R ++K A+L+ +N + +A+L + GK
Sbjct: 35 LSALEILEAAETAYDAGR--GWWPTMPLEERIDCLHKFADLLKENKEEVANLLMWEIGKT 92
Query: 60 YEDSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGNK 100
+D++ ++ D R +++G ++P + K
Sbjct: 93 LKDALKEVDRTIDYIRDTIEELKRLDGDSLPGDWFPGTKGK 133
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 45.3 bits (108), Expect = 6e-07
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+ DVD A+ A AAF + W R +++ K A+L++ N L +L + GK
Sbjct: 68 AEDVDAALAIAAAAF---AGWSATPVEERAEILEKAADLLEANRGELIALAAAEAGKTLA 124
Query: 62 DSIFDLGCASDTFRYFA 78
D+ ++ A D RY+A
Sbjct: 125 DADAEVREAIDFCRYYA 141
>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde
dehydrogenase. Members of this protein family are
succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.71), the fourth enzyme in the arginine
succinyltransferase (AST) pathway for arginine
catabolism [Energy metabolism, Amino acids and amines].
Length = 484
Score = 45.1 bits (107), Expect = 8e-07
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY 60
A V+ AV +A+AAF W L R ++ + A L+++ + LA + + GKP
Sbjct: 35 AQVEAAVAAARAAFPA---WARLSLEERIAVVQRFAALLEERKEALARVIARETGKPL 89
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 44.5 bits (106), Expect = 1e-06
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+KA+++A AF+ W+ R +++ + A +I + ++ + GKP+ +
Sbjct: 73 ELAEKAMQAALEAFET---WKKWSPEDRARILLRAAAIIRRRKHEFSAWLVKEAGKPWAE 129
Query: 63 SIFDLGCASDTFRYFA 78
+ D A D Y+A
Sbjct: 130 ADADTAEAIDFLEYYA 145
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and
catalyzes the NAD+-dependent reduction of
succinylglutamate semialdehyde into succinylglutamate.
Length = 431
Score = 43.8 bits (104), Expect = 2e-06
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP 59
VD AV +A+AAF W L R ++ + AEL+ N + LA L + + GKP
Sbjct: 1 QVDAAVAAARAAFPG---WAALSLEERAAILRRFAELLKANKEELARLISRETGKP 53
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 42.4 bits (99), Expect = 6e-06
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 8 AVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDL 67
AV +AK AF +WRN + R +++ K ELI KN+D LA T + GK +DS D+
Sbjct: 156 AVSAAKQAF---PLWRNTPITTRQRVMLKFQELIRKNMDKLAMNITTEQGKTLKDSHGDI 212
Query: 68 GCASDTFRYFAGWCDKIEGSTIPSES 93
+ + G G +P+ S
Sbjct: 213 FRGLEVVEHACGMATLQMGEYLPNVS 238
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 42.2 bits (99), Expect = 8e-06
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+VD AV SA+ F W + R ++ + L+ ++ D +A L T ++GK + D
Sbjct: 38 DEVDAAVASARETF---LTWGQTSLAQRTSVLLRYQALLKEHRDEIAELITAEHGKTHSD 94
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
++ D+ + + G ++G T +
Sbjct: 95 ALGDVARGLEVVEHACGVNSLLKGETSTQVATR 127
>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase;
Reviewed.
Length = 487
Score = 42.3 bits (100), Expect = 9e-06
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP 59
A VD AV +A+AAF W L R ++ + A L+++N + LA + + GKP
Sbjct: 37 AQVDAAVRAARAAFPA---WARLSFEERQAIVERFAALLEENKEELAEVIARETGKP 90
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 41.6 bits (98), Expect = 1e-05
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
ADV++A+E+A AA +W + R ++ + A+L++ + L L + GK
Sbjct: 149 EADVEQALEAAVAAA---PIWSATPPAERAAILERAADLMEAQMPQLMGLLVREAGKTLS 205
Query: 62 DSIFDLGCASDTFRYFAG 79
++I ++ A D RY+AG
Sbjct: 206 NAIAEVREAVDFLRYYAG 223
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and
ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and
similar sequences, are in this CD. Significant
improvement of stress tolerance in tobacco plants was
observed by overexpressing the ALDH22A1 gene from maize
(Zea mays) and was accompanied by a reduction of
malondialdehyde derived from cellular lipid
peroxidation.
Length = 465
Score = 41.1 bits (97), Expect = 2e-05
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DVD+A+ +A+AA + W + R K++ L + I +N + + + D GK D
Sbjct: 18 EDVDEAIAAARAAQRE---WAKTSFAERRKVLRSLLKYILENQEEICRVACRDTGKTMVD 74
Query: 63 SIF 65
+
Sbjct: 75 ASL 77
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 40.9 bits (97), Expect = 2e-05
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
ADVD+AV +A+ AF W R L+ ++AE + D LA TL+ G P
Sbjct: 36 ADVDRAVAAARRAFPA---WSATSVEERAALLERIAEAYEARADELAQAITLEMGAPITL 92
Query: 63 SI-FDLGCASDTFRYFA 78
+ +G R A
Sbjct: 93 ARAAQVGLGIGHLRAAA 109
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 40.7 bits (95), Expect = 3e-05
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
A V A++SA+ AF W A R + +LA+L++ ++ L +L + GK +
Sbjct: 74 AHVQAAIDSAQQAF---PTWNATPAKERAAKLDRLADLLELHMPELMALCVREAGKTIHN 130
Query: 63 SIFDLGCASDTFRYFAG 79
+I ++ A D RY+A
Sbjct: 131 AIAEVREAVDFCRYYAK 147
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 39.8 bits (93), Expect = 5e-05
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 10 ESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGC 69
E +A + +W + A RG+++ ++ + + +DYL L +L+ GK + I ++
Sbjct: 60 EGLRACEEAAKIWMQVPAPKRGEIVRQIGDALRAKLDYLGRLVSLEMGKILAEGIGEVQE 119
Query: 70 ASDTFRYFAGWCDKIEGSTIPSESKDNI 97
D + G ++ GS IPSE +++
Sbjct: 120 IIDMCDFAVGLSRQLNGSIIPSERPNHM 147
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 39.3 bits (92), Expect = 7e-05
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY 60
A +DKA+++A A F + W L A R ++ +LA+L+++ D LA L + GKP
Sbjct: 19 DWAAIDKALDTAHALFLDRNNW--LPAHERIAILERLADLMEERADELALLIAREGGKPL 76
Query: 61 EDSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
D+ ++ A D A ++ G IP
Sbjct: 77 VDAKVEVTRAIDGVELAADELGQLGGREIP 106
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 39.1 bits (91), Expect = 1e-04
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
+ A+++A AF+ W+ D R +++K A ++ + ++L + GKP+ ++
Sbjct: 70 HAEHALQAAAKAFEA---WKKTDPEERAAILFKAAAIVRRRRHEFSALLVKEVGKPWNEA 126
Query: 64 IFDLGCASDTFRYFA 78
++ A D Y+A
Sbjct: 127 DAEVAEAIDFMEYYA 141
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 and also, the
Mycobacterium tuberculosis H37Rv ALDH AldA (locus
Rv0768) sequence; and other similar sequences, are
included in this CD.
Length = 459
Score = 38.0 bits (89), Expect = 3e-04
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP--Y 60
ADVD A+ +A+ AF G W DA R + + +L E ++ + L +L + G P
Sbjct: 19 ADVDAAIAAARRAFDTGD-WS-TDAEERARCLRQLHEALEARKEELRALLVAEVGAPVMT 76
Query: 61 EDSIFDLGCASDTFRYFAG 79
++ G RYFA
Sbjct: 77 ARAMQVDGPI-GHLRYFAD 94
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 37.3 bits (87), Expect = 5e-04
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 3 ADVDKAVESAKAAFKRGSVWR--NLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY 60
V E A + L R ++ K A L++ + A L TL++G
Sbjct: 13 GTVPAGTEEALREALALAASYRSTLTRYQRSAILNKAAALLEARREEFARLITLESGLCL 72
Query: 61 EDSIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
+D+ +++G A+D R+ A + +G + +
Sbjct: 73 KDTRYEVGRAADVLRFAAAEALRDDGESFSCD 104
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 36.1 bits (84), Expect = 0.001
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
DVD+A +A AA K W R +++ K A+++++ D + ++G +
Sbjct: 33 DVDEAYRAAAAAQKE---WAATLPQERAEILEKAAQILEERRDEIVEWLIRESGSTRIKA 89
Query: 64 IFDLGCASDTFRYFAGWCDKIEGSTIPS--ESKDN 96
+ G A R A + ++EG +PS K+N
Sbjct: 90 NIEWGAAMAITREAATFPLRMEGRILPSDVPGKEN 124
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 36.0 bits (84), Expect = 0.001
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DV++A+ +A+AAF W A+ R ++ + A+L++ ++ L +L + GK +
Sbjct: 590 EDVERALAAAQAAFPE---WSATPAAERAAILERAADLMEAHMPELFALAVREAGKTLAN 646
Query: 63 SIFDLGCASDTFRYFA 78
+I ++ A D RY+A
Sbjct: 647 AIAEVREAVDFLRYYA 662
>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent
alpha-ketoglutaric semialdehyde dehydrogenases and
plant delta(1)-pyrroline-5-carboxylate dehydrogenase,
ALDH family 12-like. ALDH subfamily which includes the
NAD(P)+-dependent, alpha-ketoglutaric semialdehyde
dehydrogenases (KGSADH, EC 1.2.1.26); plant
delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of
the MaoC (monoamine oxidase C) dehydratase regulatory
protein; and orthologs of MaoC, PaaZ and PaaN, which
are putative ring-opening enzymes of the aerobic
phenylacetic acid catabolic pathway.
Length = 442
Score = 35.7 bits (82), Expect = 0.002
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 14 AAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDT 73
AA R L R + ++ + + +A+ L GK ++
Sbjct: 7 AADISTKAARRLALPKRADFLARIIQRLAAKSYDIAAGAVLVTGKG-WMFAENICGDQVQ 65
Query: 74 FRYFAGWCDKIEGSTIPSESKDNIG 98
R A I IP E +++G
Sbjct: 66 LRARA---FVIYSYRIPHEPGNHLG 87
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 35.2 bits (81), Expect = 0.002
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 9 VESAKAAFKRGSVWR-NLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDL 67
V+ + AF + +R L R ++ + A L+ + ++ L TL++G +DS++++
Sbjct: 38 VDDVRRAFAIAAAYRPTLTRYERSAILDRAAALLAARKEEISDLITLESGLSKKDSLYEV 97
Query: 68 GCASDTFRYFAGWCDKIEGST 88
G +D + A + +G
Sbjct: 98 GRVADVLTFAAAEALRDDGQI 118
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 35.1 bits (81), Expect = 0.003
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 36 KLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEGSTIPSE-SK 94
K+A I + +++L + GK + + ++ +D Y A W + EG I S+
Sbjct: 3 KIAAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGEIIQSDRPG 62
Query: 95 DNI 97
+NI
Sbjct: 63 ENI 65
>gnl|CDD|181826 PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed.
Length = 457
Score = 34.3 bits (79), Expect = 0.005
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+VD A+ A A F+ +R + R + A+L++ D +A+L TL+ GK
Sbjct: 22 DDEVDAAIARAHARFR---DYRTTTFAQRARWANAAADLLEAEADQVAALMTLEMGKTLA 78
Query: 62 DSIFDLGCASDTFRYFA 78
+ + + FRY+A
Sbjct: 79 SAKAEALKCAKGFRYYA 95
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 34.2 bits (79), Expect = 0.006
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
A+V++A+ESA A +W + R ++ + A+L++ + L L + GK +
Sbjct: 681 PAEVEQALESAVNA---APIWFATPPAERAAILERAADLMEAQMQTLMGLLVREAGKTFS 737
Query: 62 DSIFDLGCASDTFRYFAG 79
++I ++ A D RY+AG
Sbjct: 738 NAIAEVREAVDFLRYYAG 755
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 33.8 bits (78), Expect = 0.006
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP 59
V A+E A+AA K WR + R ++ + EL+ N D +A T G+P
Sbjct: 18 EAVRAALERARAAQK---GWRAVPLEERKAIVTRAVELLAANTDEIAEELTWQMGRP 71
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 33.6 bits (77), Expect = 0.009
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLET-LDNGK-PY 60
+KAVE+A A K W L R + K A+L+ T L K Y
Sbjct: 69 ELANKAVEAALDAKKE---WSLLPFYDRAAIFLKAADLLSGPYRAEILAATMLGQSKTVY 125
Query: 61 EDSIFDLGCASDTFRYFAGWCDKIEG 86
+ I + D FR+ A + ++
Sbjct: 126 QAEIDAVAELIDFFRFNAKYARELYE 151
>gnl|CDD|237956 PRK15398, PRK15398, aldehyde dehydrogenase EutE; Provisional.
Length = 465
Score = 33.0 bits (76), Expect = 0.013
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLE 52
A VD AV +AK A +R ++ + R ++I + E + + + LA L
Sbjct: 36 ASVDDAVAAAKVAQQR---YQQKSLAMRQRIIDAIREALLPHAEELAELA 82
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 32.8 bits (75), Expect = 0.015
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
+V+KA+ESAKAA K W R +L++K A ++ ++ +A + KP +D+
Sbjct: 54 EVNKAMESAKAAQKA---WAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDA 110
Query: 64 IFDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
+ ++ + D Y A EG I E K
Sbjct: 111 VTEVVRSGDLISYTAE-----EGVRILGEGK 136
>gnl|CDD|143439 cd07121, ALDH_EutE, Ethanolamine utilization protein EutE-like.
Coenzyme A acylating aldehyde dehydrogenase (ACDH), an
NAD+ and CoA-dependent acetaldehyde dehydrogenase,
acetylating (EC=1.2.1.10), converts acetaldehyde into
acetyl-CoA. This CD is limited to such monofunctional
enzymes as the Ethanolamine utilization protein, EutE,
in Salmonella typhimurium. Mutations in eutE abolish
the ability to utilize ethanolamine as a carbon source.
Length = 429
Score = 32.6 bits (75), Expect = 0.019
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLE 52
A VD AV +AKAA K +R + R K+I + E + N + LA +
Sbjct: 4 ATVDDAVAAAKAAQK---QYRKCTLADREKIIEAIREALLSNAEELAEMA 50
>gnl|CDD|143447 cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde
Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA)
Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the
NAD(P)+-dependent conversion of KGSA to
alpha-ketoglutarate. This CD contains such sequences as
those seen in Azospirillum brasilense, KGSADH-II
(D-glucarate/D-galactarate-inducible) and KGSADH-III
(hydroxy-L-proline-inducible). Both show similar high
substrate specificity for KGSA and different coenzyme
specificity; KGSADH-II is NAD+-dependent and KGSADH-III
is NADP+-dependent. Also included in this CD is the
NADP(+)-dependent aldehyde dehydrogenase from Vibrio
harveyi which catalyzes the oxidation of long-chain
aliphatic aldehydes to acids.
Length = 454
Score = 32.1 bits (74), Expect = 0.023
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYL---ASLET 53
VD A +A AAF+ +R L + R + +A+ I+ D L A ET
Sbjct: 1 VDAAAAAAAAAFE---SYRALSPARRAAFLEAIADEIEALGDELVARAHAET 49
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of
GabD1 was shown to be much higher than that of GabD2,
and GabD2 (SSADH2) is likely to serve physiologically
as a dehydrogenase for a different aldehyde(s).
Length = 454
Score = 31.9 bits (73), Expect = 0.031
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGK 58
ADV+ A A+AA + W + R + + +L+ + D L L L+ GK
Sbjct: 16 TPADVEAAFARARAAQRA---WAARPFAERAAVFLRFHDLVLERRDELLDLIQLETGK 70
>gnl|CDD|237016 PRK11903, PRK11903, aldehyde dehydrogenase; Provisional.
Length = 521
Score = 31.6 bits (72), Expect = 0.043
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 15 AFKR---GSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCAS 71
AF R G+ R L + R L+ + +++ N D + T ++G DS D+
Sbjct: 47 AFAREQGGAALRALTYAQRAALLAAIVKVLQANRDAYYDIATANSGTTRNDSAVDIDGGI 106
Query: 72 DTFRYFAGWCDKI 84
T Y+A +
Sbjct: 107 FTLGYYAKLGAAL 119
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 31.0 bits (71), Expect = 0.061
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGK 58
ADV+ A A+AA + W R ++ + +L+ +N + L L L+ GK
Sbjct: 54 ADVEAAFARARAAQRA---WAATPVRERAAVLLRFHDLVLENREELLDLVQLETGK 106
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3
members, and similar fungal sequences, are present in
this CD.
Length = 436
Score = 29.1 bits (66), Expect = 0.30
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
++D +A F+ G + D R + +L + N + + D G+P +
Sbjct: 5 DEIDSIHSRLRATFRSG---KTKDLEYRLWQLKQLYWAVKDNEEAIVEALKKDLGRPPFE 61
Query: 63 SIF 65
++
Sbjct: 62 TLL 64
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 29.0 bits (65), Expect = 0.32
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP-- 59
+AD+D A+ +A+ AF R D + R + + +L + + +V+ L L + G P
Sbjct: 36 AADMDAAIAAARRAFDETDWSR--DTALRVRCLRQLRDALRAHVEELRELTIAEVGAPRM 93
Query: 60 ------YEDSIFDLGCASDT 73
E + DLG A+D
Sbjct: 94 LTAGAQLEGPVDDLGFAADL 113
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried
out by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 27.6 bits (62), Expect = 0.93
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLA 49
+ADVD+A A AA + W R ++ + A+L++++ D +A
Sbjct: 12 AADVDRAAARAAAAQRA---WAATPPRERAAVLRRAADLLEEHADEIA 56
>gnl|CDD|235755 PRK06256, PRK06256, biotin synthase; Validated.
Length = 336
Score = 27.1 bits (61), Expect = 1.8
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 4 DVDKAVESAKAAFKRGSVWRNLDASGRG---KLIYKLAELIDK-----NVDYLASL 51
D+++ +E+AK A + G+ + ASGRG K + ++ E + +++ A L
Sbjct: 92 DIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACL 147
>gnl|CDD|205399 pfam13218, DUF4026, Protein of unknown function (DUF4026). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 450 amino acids in length.
The family is found in association with pfam10077.
Length = 323
Score = 25.9 bits (57), Expect = 4.7
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 33 LIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEGSTIPS 91
Y +A ++ + ++ +D +P E+ F+L A + D+ E PS
Sbjct: 235 YEYLVAVPFEEGLRHVGQSTPIDQLRPLEEMRFELQGAPQG-VFLGDMADRDEYHQHPS 292
>gnl|CDD|216879 pfam02112, PDEase_II, cAMP phosphodiesterases class-II.
Length = 323
Score = 25.2 bits (55), Expect = 7.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 19 GSVWRNLDASGRGKLIYKL 37
VW NL + G LIYK+
Sbjct: 129 NLVWPNLPSFGIVNLIYKV 147
>gnl|CDD|218551 pfam05314, Baculo_ODV-E27, Baculovirus occlusion-derived virus
envelope protein EC27. This family consists of several
baculovirus occlusion-derived virus envelope proteins
(EC27 or E27). The ODV-E27 protein has distinct
functional characteristics compared to cellular and
viral cyclins. Depending on the cdk protein, and
perhaps other viral or cellular proteins yet to be
described, the kinase-EC27 complex may have either
cyclin B- or D-like activity.
Length = 280
Score = 25.3 bits (56), Expect = 7.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 35 YKLAELIDKNVDYLASLETLD 55
Y L EL KN++ L S E
Sbjct: 25 YDLTELDYKNLNSLRSYEKRK 45
>gnl|CDD|232973 TIGR00433, bioB, biotin synthase. Catalyzes the last step of the
biotin biosynthesis pathway. All members of the seed
alignment are in the immediate gene neighborhood of a
bioA gene [Biosynthesis of cofactors, prosthetic groups,
and carriers, Biotin].
Length = 296
Score = 25.1 bits (56), Expect = 8.3
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 4 DVDKAVESAKAAFKRGSVWRNLDASGRG---KLIYKLAELID 42
V++ +E+AK A G+ + SGRG + K+ E I
Sbjct: 64 SVEEVLEAAKKAKAAGASRFCMVTSGRGPSDREFEKVLEAIR 105
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.133 0.391
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,916,195
Number of extensions: 402942
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 110
Length of query: 100
Length of database: 10,937,602
Length adjustment: 66
Effective length of query: 34
Effective length of database: 8,010,238
Effective search space: 272348092
Effective search space used: 272348092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)