RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13780
(100 letters)
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 150 bits (381), Expect = 4e-45
Identities = 45/93 (48%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DVDKAV++A+ AF+ GS WR +DAS RG+L+ KLA+LI+++ LA++E ++ GK + +
Sbjct: 58 EDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSN 117
Query: 63 S-IFDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
+ + DLG T RY AGW DKI+G TIP +
Sbjct: 118 AYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGN 150
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 150 bits (381), Expect = 5e-45
Identities = 51/93 (54%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DVDKAV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++ YLA+LETLDNGKPY
Sbjct: 57 EDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVI 116
Query: 63 S-IFDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
S + DL RY+AGW DK G TIP +
Sbjct: 117 SYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGD 149
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 146 bits (370), Expect = 3e-43
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DV KAV +A+ AF G W + + R +L++K+A+LI + LA +E+L+ GKP
Sbjct: 61 DDVRKAVAAARKAFDAGP-WPRMSGAERSRLMFKVADLILARQEELALIESLEVGKPIAQ 119
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
+ ++G +D + Y AG +EG T + D
Sbjct: 120 ARGEIGFCADLWSYAAGQARALEGQTHNNIGDD 152
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 145 bits (368), Expect = 5e-43
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
D ++A+ +A+ AF+ G W A RGK + +A+ I ++ + LA LETLD GK E+
Sbjct: 70 EDAERAILAARRAFESGE-WSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEE 128
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
S D+ + F YFAG DK G I S D
Sbjct: 129 SYADMDDIHNVFMYFAGLADKDGGEMIDSPIPD 161
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 144 bits (366), Expect = 8e-43
Identities = 43/89 (48%), Positives = 65/89 (73%), Gaps = 2/89 (2%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+DVDKAV +AK AF+ G W ++A RG+L+Y+LA++++++ + LA++E LD G Y
Sbjct: 74 SDVDKAVAAAKEAFENGL-WGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTL 132
Query: 63 S-IFDLGCASDTFRYFAGWCDKIEGSTIP 90
+ +G + TFRYFAGWCDKI+G+TIP
Sbjct: 133 ALKTHVGMSIQTFRYFAGWCDKIQGATIP 161
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 142 bits (360), Expect = 6e-42
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+VD+AV+SA+AA+ W + R +++ + A +I + D +A LE ++NGK +
Sbjct: 58 EEVDQAVQSAQAAYL---KWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITE 114
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIP 90
+ +D+ A Y+AG + G I
Sbjct: 115 AEYDIDAAWQCIEYYAGLAPTLSGQHIQ 142
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 139 bits (354), Expect = 4e-41
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 3 ADVDKAVESAKAAFKR--GSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY 60
DVD AV +AK A R G+ W + R + + +A + + LA LE++D GKP
Sbjct: 45 EDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPL 104
Query: 61 EDSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
+++ +D+ + F Y+A +K++
Sbjct: 105 DEAAWDIDDVAGCFEYYADLAEKLDARQKA 134
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 138 bits (350), Expect = 1e-40
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
DV++AV+SA K VW + A R +++ + +++ + D LA+LETLD GKP +
Sbjct: 44 EDVERAVQSAVEGQK---VWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAE 100
Query: 63 SI-FDLGCASDTFRYFAGWCDKIEGSTIP 90
+ D+ +D Y+AG IEG IP
Sbjct: 101 TRSVDIVTGADVLEYYAGLVPAIEGEQIP 129
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 135 bits (342), Expect = 2e-39
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
VD AV +A AAF W R + + KLA++I++N A LE+ + GKP
Sbjct: 60 EQVDAAVRAADAAFA---EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHS 116
Query: 63 SI-FDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
+ ++ D FR+FAG + G +
Sbjct: 117 AFNDEIPAIVDVFRFFAGAARCLNGLAAGEYLEG 150
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 135 bits (342), Expect = 3e-39
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
A V++A+ SAK A K W + RG+++ + A+++ + D L++LETLD GKP ++
Sbjct: 52 AIVERAIASAKRAQK---EWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQE 108
Query: 63 S-IFDLGCASDTFRYFAGWC-DKIEGSTIPSESK 94
+ + D +D F +F G + G IP
Sbjct: 109 TIVADPTSGADAFEFFGGIAPSALNGDYIPLGGD 142
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 134 bits (340), Expect = 4e-39
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
A +D AV++A+ AF W + R + K+A+ I+K D A+LE L+ GKP
Sbjct: 62 AQIDAAVDAAERAFVG---WSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPINA 118
Query: 63 SI-FDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
+L D +R+FAG +
Sbjct: 119 VKNDELPAIIDCWRFFAGAVRNLHAPAAGEYLPG 152
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 134 bits (340), Expect = 5e-39
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+VD+A ++A AF+R W A R + + ++AELI+K+ D LA +E LD G+
Sbjct: 64 REVDRAAKAAHEAFQR---WSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQVLRI 120
Query: 63 SIFDLGCASDTFRYFAGWCDK-IEGSTIP 90
+ A++ F ++A + + +E T P
Sbjct: 121 VRAQVARAAENFAFYAEYAEHAMEDRTFP 149
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 122 bits (308), Expect = 2e-34
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
A+ + A+E+A AFK W++ R +L+ K A L+ + L + + GK + +
Sbjct: 74 AEAEAALEAAWKAFKT---WKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVE 130
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGN 99
+ D+ A D Y+A + + N
Sbjct: 131 ASADVAEAIDFIEYYARAALRYRYPAVEVVPYPGEDN 167
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 121 bits (305), Expect = 5e-34
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+KA++SA AF+ WRN++ R ++ K A +I + ++ + GKP+++
Sbjct: 74 DLAEKAIQSADEAFQT---WRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPWKE 130
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
+ D A D Y+A ++
Sbjct: 131 ADADTAEAIDFLEYYARQMIELNRGKEILSRPG 163
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 111 bits (281), Expect = 1e-30
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
ADVD A E+AK A W A+ R +IY+ AEL++++ + + ++G
Sbjct: 50 ADVDAAYEAAKKAQA---EWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGSTRSK 106
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
+ ++ A + + A + ++ G PS +
Sbjct: 107 ANLEITLAGNITKESASFPGRVHGRISPSNTPG 139
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 109 bits (275), Expect = 8e-30
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
ADVD AV +A+AAF G W + R +I +++ + D L + G+P
Sbjct: 46 ADVDAAVAAARAAFDNGP-WPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPPTI 104
Query: 63 S-IFDLGCASDTFRYFAGWCDKIEGSTIP 90
+ YFAG DK+ +
Sbjct: 105 IETMHWMGSMGAMNYFAGAADKVTWTETR 133
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 103 bits (259), Expect = 1e-27
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
D DKA+ +AK AF+ W+ R + K+ E+ +K +A +++ G P +
Sbjct: 63 RDADKAINAAKKAFQT---WKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPIDM 119
Query: 63 S-IFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
+ S R F + E +
Sbjct: 120 ALNAQTATGSSHIRNFIKAYKEFSFQEALIEGNEQ 154
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 101 bits (255), Expect = 4e-27
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+ + R L + R + + +L+ ++ T ++G D
Sbjct: 44 DLARAFSFAREDGGA---ALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTRND 100
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
S D+ T Y+A + +
Sbjct: 101 SAVDIDGGIFTLSYYAKLGASLGEVHALRD 130
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 100 bits (252), Expect = 1e-26
Identities = 20/92 (21%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+ +A+++A+ + V +NL + R ++ +A+ I + + LA + +D GKP +
Sbjct: 34 EEAKEAIDTAEKYKE---VMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKPIKQ 90
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
+ ++ + TF+ A + + IPS+ +
Sbjct: 91 ARVEVERSIGTFKLAAFYVKEHRDEVIPSDDR 122
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 99 bits (250), Expect = 2e-26
Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+V++ ++ + R++ + R ++ K A++I++N+D A + ++ GKP
Sbjct: 54 EEVERTLDVLFKRGR--WSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSA 111
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGNK 100
++ ++ A D R KI G IP + +
Sbjct: 112 AVGEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLET 149
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 97.6 bits (244), Expect = 2e-25
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+V+ A++ AK A K +W+ R L+Y A+L+++ + + L + KP +
Sbjct: 49 EEVNDAIQGAKDAQK---IWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKKS 105
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSES 93
+I ++ +D R+ A ++ G T+ +
Sbjct: 106 AIGEVSRTADIIRHTADEALRLNGETLKGDQ 136
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 96.4 bits (241), Expect = 4e-25
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
ADVDKAVE+A + +R+ R L+ K+ + + D + T + G P
Sbjct: 45 ADVDKAVEAADDVYLE---FRHTSVKERQALLDKIVKEYENRKDDIVQAITDELGAPLSL 101
Query: 63 S-IFDLGCASDTFRYFAGWCDKIEGSTIPSES 93
S + F D E +
Sbjct: 102 SERVHYQMGLNHFVAARDALDNYEFEERRGDD 133
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 94.2 bits (235), Expect = 2e-24
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
VD AV +A+ AF W R +L+ + A + D LA + + GKP +
Sbjct: 42 TQVDAAVCAAREAFPA---WARRPLEQRIELLERFAATLKSRADELARVIGEETGKPLWE 98
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPS 91
S ++ + + G
Sbjct: 99 SATEVTSMVNKVAISVQAFRERTGEKSGP 127
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 93.5 bits (233), Expect = 5e-24
Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+V++A +A + +R L+ S R L+ +A ++ D + + L+ P
Sbjct: 30 VEVNQAATAAAKVAR---DFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEVR 86
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
++ ++ R FA + ++ +
Sbjct: 87 LTGEIARTANQLRLFADVVNSGSYHQAILDTPN 119
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 85.8 bits (213), Expect = 2e-21
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+V A+ +AKAAF WR+ D R + + K A+ K + L++ + L+ GK ++
Sbjct: 568 TEVGDAIAAAKAAFPA---WRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQWDQ 624
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
+ D+ A D Y+A ++ +
Sbjct: 625 AYADVTEAIDFLEYYAREMIRLGQPQRVGHAPG 657
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 83.8 bits (208), Expect = 1e-20
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
AD ++ V+ A+ A+K W ++ A RG+++ ++ + + + + L SL +L+ GK +
Sbjct: 59 ADYEETVKKAREAWKI---WADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKILVE 115
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
+ ++ D Y G I G +PSE
Sbjct: 116 GVGEVQEYVDICDYAVGLSRMIGGPILPSERSG 148
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 82.6 bits (205), Expect = 3e-20
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+ D KA+++A+ A W L A R + K++ I + +++L + GK +
Sbjct: 43 AEDARKAIDAAERAQPE---WEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQ 99
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
+ ++ +D Y A W + EG I S+
Sbjct: 100 LAEVEVAFTADYIDYMAEWARRYEGEIIQSDRPGE 134
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 79.5 bits (197), Expect = 3e-19
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+VD SAK A WR L R ++K+A+++ ++ + + ++ + + K Y+
Sbjct: 40 EEVDYVYASAKKAQPA---WRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKS 96
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSES 93
++ ++ ++ Y A ++EG + S
Sbjct: 97 AVSEVVRTAEIINYAAEEGLRMEGEVLEGGS 127
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI,
MCSG, structural genomics, midwest center for STR
genomics; 2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 75.4 bits (186), Expect = 1e-17
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP-YE 61
A++D + K A + + K+ + ++ LA ++G E
Sbjct: 7 AELDAMIARVKKAQE---EFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMGIVE 63
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEG 86
D + AS+ F Y ++ G
Sbjct: 64 DKVIKNHFASE-FIYNKYKDEQTCG 87
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 72.1 bits (177), Expect = 2e-16
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
AV +A+A F W A R + + A L++ + +L + GK +D
Sbjct: 550 DQAHAAVAAARAGFAG---WSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTLDD 606
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGNK 100
++ +L A+D RY+A K+ GS N
Sbjct: 607 ALSELREAADFCRYYAAQGRKLFGSETAMPGPTGESNA 644
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 71.8 bits (177), Expect = 2e-16
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
++ A + A+ A K W R ++ K + +N D + + + G
Sbjct: 44 KQLEDAFDIAQKAQKE---WAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIK 100
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGS-TIPSESKDN 96
S +L + ++ G +PS+ +
Sbjct: 101 STIELEQTIAILDEAMTYTGELGGVKEVPSDIEGK 135
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 71.8 bits (177), Expect = 2e-16
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
AD + A+E A+AA K W L A R ++ A I +N LA + + GK
Sbjct: 50 ADAENALEVAQAAQKA---WAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGKLLSV 106
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
+ ++ + Y IEG +PS+++D
Sbjct: 107 AEMEVDVTATFIDYGCDNALTIEGDILPSDNQDE 140
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 70.1 bits (172), Expect = 8e-16
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
V++A E+A+ AF + R + +A+ I+ + + + + + G P
Sbjct: 63 ELVNRACEAAEEAFW---TYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPEAR 119
Query: 63 SIFDLGCASDTFRYFAG------WCDKIEGSTIPS 91
+ G + R FA + D+ + +P
Sbjct: 120 LNGERGRTTGQLRLFADHIEKGDYLDRRVDAAMPE 154
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 68.7 bits (169), Expect = 3e-15
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+ AV +A AF R WR + A R L+ K L+ +N D LA + T ++GKP ++
Sbjct: 48 REARAAVRAAYEAFCR---WREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKE 104
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
+ ++ ++ +F+ ++ G I + +KD
Sbjct: 105 AHGEILYSAFFLEWFSEEARRVYGDIIHTPAKDR 138
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 68.4 bits (168), Expect = 3e-15
Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
DV AVE+ ++A + R K + + + + +N + + + +++GKP++
Sbjct: 48 EEDVVAAVEAGQSALRL---TNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHGKPWK 104
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
++ ++ A+ F Y A ++ TIP + KD
Sbjct: 105 EAQGEVDYAAGFFDYCAKHISALDSHTIPEKPKDC 139
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 67.9 bits (167), Expect = 4e-15
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
A+ +A+E+A+AA+ WR A R ++ + +L+ N D LA + T + GKP +
Sbjct: 50 AETARAIEAAQAAWAG---WRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPLAE 106
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
+ ++ A+ +FA ++ G T+P+ +
Sbjct: 107 AKGEIAYAASFIEWFAEEGKRVAGDTLPTPDANK 140
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 67.9 bits (167), Expect = 4e-15
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+ A+++A A WR L A R ++ L+ ++ D LA L TL+ GKP +
Sbjct: 47 DETRAAIDAANRALPA---WRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAE 103
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
+ ++ A+ +FA +I G TIP D
Sbjct: 104 AKGEISYAASFIEWFAEEGKRIYGDTIPGHQADK 137
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 67.6 bits (166), Expect = 5e-15
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
A + +A++++ A W A R ++ K +LI N D +A + T + GKP
Sbjct: 69 VATIKEAIDASAKALSG---WAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPLA 125
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
++ ++ A+ +FA ++ G TIP+
Sbjct: 126 EARGEVLYAASFIEWFAEEAKRVYGDTIPAPQNGQ 160
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 65.9 bits (161), Expect = 3e-14
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP-YE 61
+V +ESA A K + ++ +A+ + LA + + G ++
Sbjct: 12 QEVRNLIESANKAQK---ELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGIWQ 68
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
D + AS + + ++ + E +
Sbjct: 69 DKVIKNVFASK---HVYNYIKDMKTIGMLKEDNEK 100
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 61.0 bits (149), Expect = 1e-12
Identities = 12/76 (15%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+++ A+ A + FK+ W+ + R + + + + + + + +A T + GKP +
Sbjct: 29 QEIEHALSLAASGFKK---WKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIKQ 85
Query: 63 SIFDLGCASDTFRYFA 78
+ ++ ++ ++A
Sbjct: 86 ARAEVTKSAALCDWYA 101
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 60.6 bits (148), Expect = 2e-12
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+D+A+ A A +K+ WR+ + + R ++++ +A + ++ D LA + TL+ GK +
Sbjct: 26 KQIDEAINLAHALYKK---WRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLLSE 82
Query: 63 SIFDLGCASDTFRYFA 78
S ++ Y+A
Sbjct: 83 SKEEVELCVSICNYYA 98
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 59.9 bits (146), Expect = 3e-12
Identities = 17/66 (25%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
D+D A ++A AFK W + R ++++ +L+ ++ + LA L T++NGK +
Sbjct: 42 KEDIDYAAQTAAEAFKT---WSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTK 98
Query: 62 DSIFDL 67
+++ ++
Sbjct: 99 EALGEV 104
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 60.0 bits (146), Expect = 3e-12
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
AD+ AVESAKAA + W + R ++ K +L++ N++ LA + + ++GK +
Sbjct: 63 DADLAAAVESAKAAQPK---WAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTID 119
Query: 62 DSIFDL 67
D+ D+
Sbjct: 120 DAKGDI 125
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 49.6 bits (119), Expect = 1e-08
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELI-DKNVDYLASLETLDNGKPYE 61
A +++A+++A AA K W + R ++ K A+++ + + + GK
Sbjct: 100 ALLNRAIDAALAARKE---WDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTVI 156
Query: 62 DSIFDLGC-ASDTFRYFAGWCDKIEG 86
+ D D FR+ A + ++EG
Sbjct: 157 QAEIDAAAELIDFFRFNAKFAVELEG 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.011
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 15/67 (22%)
Query: 22 WRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED-SIF--DLGCASDTFRYFA 78
W++++ KL +I+ +++ L E ++ S+F +
Sbjct: 347 WKHVN-------CDKLTTIIESSLNVLEPAEYRKM---FDRLSVFPPSAHIPTILLSLI- 395
Query: 79 GWCDKIE 85
W D I+
Sbjct: 396 -WFDVIK 401
Score = 26.4 bits (57), Expect = 1.8
Identities = 19/104 (18%), Positives = 29/104 (27%), Gaps = 38/104 (36%)
Query: 1 MSADV--DKAVESAKAAFKRGSVWRNLDASGRGKLIYK----LAELIDKNVDYLAS---- 50
++ DV V+ W NL + + + L ID N +
Sbjct: 166 VALDVCLSYKVQCK---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 51 -----------LETLDNGKPYEDSI--------------FDLGC 69
L L KPYE+ + F+L C
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.012
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP- 59
M D+ K ++A+ VW D + + + +++ N L + GK
Sbjct: 1631 MGMDLYKTSKAAQD------VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 60 ---YEDSIFD 66
Y IF+
Sbjct: 1685 RENYSAMIFE 1694
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel,
hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1
c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A*
1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Length = 405
Score = 26.6 bits (59), Expect = 1.2
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 9 VESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFD 66
++ + VW N+ G GK Y V+++ + G +FD
Sbjct: 194 IDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKV----GGAASAGMVFD 247
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural
genom NPPSFA, national project on protein structural
and function analyses; 1.64A {Thermus thermophilus}
SCOP: d.58.58.1
Length = 90
Score = 25.8 bits (57), Expect = 1.3
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 20 SVWR-NLDASGRGKLIYKLAELIDKNVDYL------ASLETLDNGKPYEDSIFDL 67
SV+ LD L + L+D D L +E L G E +
Sbjct: 35 SVFECYLDERLLEDLRRRARRLLDLGQDALRIYPVAGQVEVLGVGPLPELREVQV 89
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction,
recombination,complex (recombinase/DNA), hydrolase,
ligase/DNA complex; 2.00A {Enterobacteria phage P1}
SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A
1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A
5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A*
3c28_A 1crx_A* 1pvr_A ...
Length = 324
Score = 26.1 bits (57), Expect = 2.4
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 70 ASDTFRYFAGWCDKIEGSTIPSESKD 95
S R +A WC P+E +D
Sbjct: 27 LSV-CRSWAAWCKLNNRKWFPAEPED 51
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK
guanine nucleotide exchange factors; 2.70A {Homo
sapiens} PDB: 3b13_A
Length = 436
Score = 25.4 bits (55), Expect = 4.7
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 32 KLIYKLAELIDKNVDYLASLETLDNGKP-YEDSIFDLGCASDTFRYFAGWCDKIE 85
L + DK + ++ YE IFD S A + + I
Sbjct: 93 TLYETIIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYESIM 147
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster,
transferase; HET: SAM DTB; 3.40A {Escherichia coli}
SCOP: c.1.28.1
Length = 369
Score = 24.2 bits (53), Expect = 9.6
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 11/45 (24%)
Query: 4 DVDKAVESAKAAFKRGSV-------WRNLDASGRGKLIYKLAELI 41
+V++ +ESA+ A GS W+N + + L +++
Sbjct: 100 EVEQVLESARKAKAAGSTRFCMGAAWKNP----HERDMPYLEQMV 140
>3r5t_A Ferric vibriobactin ABC transporter, periplasmic
vibriobactin-binding protein; iron-vibriobactin
transport protein; HET: VBN; 1.45A {Vibrio cholerae}
PDB: 3r5s_A*
Length = 305
Score = 24.4 bits (53), Expect = 9.8
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 10 ESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLD 55
+ AF + +NL + R ++ +D ++ E ++
Sbjct: 237 DQQAQAFLHDPILKNLPSIQRKQVYGLGENSF--RIDLFSAREIIN 280
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.391
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,510,775
Number of extensions: 78361
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 67
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)