RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13780
(100 letters)
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 91.3 bits (225), Expect = 9e-24
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+V++A +A + +R L+ S R L+ +A ++ D + + L+ P
Sbjct: 26 VEVNQAATAAAKVAR---DFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEVR 82
Query: 63 SIFDLGCASDTFRYFAGWCDKIEGSTIP 90
++ ++ R FA +
Sbjct: 83 LTGEIARTANQLRLFADVVNSGSYHQAI 110
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 85.5 bits (211), Expect = 1e-21
Identities = 50/91 (54%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-E 61
DVDKAV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++ YLA+LETLDNGKPY
Sbjct: 51 EDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVI 110
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
+ DL RY+AGW DK G TIP +
Sbjct: 111 SYLVDLDMVLKCLRYYAGWADKYHGKTIPID 141
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 81.6 bits (201), Expect = 2e-20
Identities = 45/91 (49%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-E 61
DVDKAV++A+ AF+ GS WR +DAS RG+L+ KLA+LI+++ LA++E ++ GK +
Sbjct: 51 EDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSN 110
Query: 62 DSIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
+ DLG T RY AGW DKI+G TIP +
Sbjct: 111 AYLMDLGGCIKTLRYCAGWADKIQGRTIPMD 141
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 446
Score = 79.2 bits (194), Expect = 2e-19
Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI 64
+ V+ A+ AF + R + + L +I++N+ ++ D GK S
Sbjct: 2 ISDTVKRAREAFNS---GKTRSLQFRIQQLEALQRMINENLKSISGALASDLGKNEWTSY 58
Query: 65 F-DLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGNK 100
+ ++ + ++++ +
Sbjct: 59 YEEVAHVLEELDTTIKELPDWAEDEPVAKTRQTQQDD 95
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 71.5 bits (174), Expect = 9e-17
Identities = 16/82 (19%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+VD SAK A WR L R ++K+A+++ ++ + + ++ + + K Y+
Sbjct: 39 EEVDYVYASAKKAQP---AWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKS 95
Query: 63 SIFDLGCASDTFRYFAGWCDKI 84
++ ++ ++ Y A ++
Sbjct: 96 AVSEVVRTAEIINYAAEEGLRM 117
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW
{Escherichia coli [TaxId: 562]}
Length = 474
Score = 70.2 bits (171), Expect = 3e-16
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
VD AV +A AAF W R + + KLA++I++N A LE+ + GKP
Sbjct: 39 EQVDAAVRAADAAFAE---WGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHS 95
Query: 63 SIFDLGCASDTFRYFAGWC 81
+ D A F
Sbjct: 96 AFNDEIPAIVDVFRFFAGA 114
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
Thermoproteus tenax [TaxId: 2271]}
Length = 499
Score = 69.2 bits (168), Expect = 5e-16
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
+V++ ++ + R++ + R ++ K A++I++N+D A + ++ GKP
Sbjct: 51 REEVERTLDVLFKRGRWS--ARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKS 108
Query: 62 DSIFDLGCASDTFRYFAGWCDKIE 85
++ ++ A D R KI
Sbjct: 109 AAVGEVKAAVDRLRLAELDLKKIG 132
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 64.3 bits (155), Expect = 3e-14
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
++ + + + A+ V RN + K I K+AE +D+ + +D K E
Sbjct: 2 ELLEKAKKVREAWD---VLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERG 58
Query: 64 IFD-----LGCASDTFRYFAGWCDKI 84
+ + L C+ +
Sbjct: 59 VKESLVDRLALNDKRIDEMIKACETV 84
>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Baltic cod (Gadus callarias) [TaxId: 8053]}
Length = 503
Score = 63.2 bits (153), Expect = 8e-14
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
+VD+AV+SA+AA+ + W + R +++ + A +I + D +A LE ++NGK +
Sbjct: 58 EEVDQAVQSAQAAYLK---WSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITE 114
Query: 63 SIFDLGCASDTFRYFAGWCD 82
+ +D+ A Y+AG
Sbjct: 115 AEYDIDAAWQCIEYYAGLAP 134
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 58.0 bits (139), Expect = 5e-12
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
A+ + A+E+A AFK W++ R +L+ K A L+ + L + + GK + +
Sbjct: 74 AEAEAALEAAWKAFKT---WKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVE 130
Query: 63 SIFDLGCASDTFRYFAGWCDKIE 85
+ D+ A D Y+A +
Sbjct: 131 ASADVAEAIDFIEYYARAALRYR 153
>d1qhba_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase) {Red algae
(Corallina officinalis) [TaxId: 35170]}
Length = 595
Score = 24.5 bits (53), Expect = 2.5
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 36 KLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEGS 87
+ID + D+LA + +++G E + LG A D W + S
Sbjct: 64 DNGAIIDPD-DFLAFVRAINSGDEKEIAALTLGPARDPETGLPIWRSDLANS 114
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
TTHA1613 {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 24.2 bits (52), Expect = 3.4
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 26 DASGRGKLIYKLAELIDKNVDYLASLET 53
D L L+ K + L + ET
Sbjct: 33 DPEFTRAAAEALRPLVPKEAEILFTTET 60
>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme,
central domain {Escherichia coli [TaxId: 562]}
Length = 396
Score = 24.2 bits (51), Expect = 3.6
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 23 RNLDASGRGKLIYKLAELIDKNVDYLASL 51
+ EL D+ V Y +
Sbjct: 25 GSWRRHTDNNFWLSYRELADQLVPYAKWM 53
>d2chua1 c.92.2.4 (A:24-310) Enterochelin uptake protein CeuE
{Campylobacter jejuni [TaxId: 197]}
Length = 287
Score = 24.1 bits (51), Expect = 4.2
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLD 55
+ +V + ++ A+ K+IY +D YLAS L+
Sbjct: 224 VDRNVILGNKERAQGILDNALVAKTKAAQNKKIIY-----LDPEYWYLASGNGLE 273
>d1v0ea2 b.108.1.3 (A:761-910) Endo-alpha-sialidase {Bacteriophage
K1F [TaxId: 344021]}
Length = 150
Score = 22.6 bits (48), Expect = 9.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 56 NGKPYEDSIFDLGCASDTF 74
+ KPY D++ LG S+ F
Sbjct: 120 DVKPYNDNVTALGGPSNRF 138
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.391
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 368,273
Number of extensions: 14754
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 19
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.6 bits)