BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13781
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FR8|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
pdb|1FR8|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
Length = 288
Score = 86.3 bits (212), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 62 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEK---ANPQRYEKL 118
+NGF N YWGWGGEDDD+ NR+ G+ + R I K M+RH ++K NPQR++++
Sbjct: 190 INGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKCRMIRHSRDKKNEPNPQRFDRI 249
Query: 119 YSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 154
+ DGL SL Y V++ +++ L+T V +G
Sbjct: 250 AHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 285
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 3 NGVDRSCRQV-------NRVLYSRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFL 55
N V CR + N R++++ + DGL SL Y V++ +++ L+T
Sbjct: 222 NAVIGKCRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKIT 281
Query: 56 VQLG 59
V +G
Sbjct: 282 VDIG 285
>pdb|1FGX|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
pdb|1FGX|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
Length = 288
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 62 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEK---ANPQRYEKL 118
+NGF N YWGWGGEDDD+ NR+ G+ + R I K M+RH ++K NPQR++++
Sbjct: 190 INGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKCRMIRHSRDKKNEPNPQRFDRI 249
Query: 119 YSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 154
+ DGL SL Y V++ +++ L+T V +G
Sbjct: 250 AHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 285
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 3 NGVDRSCRQV-------NRVLYSRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFL 55
N V CR + N R++++ + DGL SL Y V++ +++ L+T
Sbjct: 222 NAVIGKCRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKIT 281
Query: 56 VQLG 59
V +G
Sbjct: 282 VDIG 285
>pdb|1NF5|B Chain B, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NF5|D Chain D, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NKH|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp And
Manganese
pdb|1NKH|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp And
Manganese
pdb|1NQI|B Chain B, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NQI|D Chain D, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NWG|B Chain B, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1NWG|D Chain D, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1O23|B Chain B, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1O23|D Chain D, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1OQM|B Chain B, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
pdb|1OQM|D Chain D, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
Length = 286
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 62 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEK---ANPQRYEKL 118
+NGF N YWGWGGEDDD+ NR+ G+ + R I K M+RH ++K NPQR++++
Sbjct: 188 INGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKCRMIRHSRDKKNEPNPQRFDRI 247
Query: 119 YSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 154
+ DGL SL Y V++ +++ L+T V +G
Sbjct: 248 AHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 283
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 3 NGVDRSCRQV-------NRVLYSRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFL 55
N V CR + N R++++ + DGL SL Y V++ +++ L+T
Sbjct: 220 NAVIGKCRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKIT 279
Query: 56 VQLG 59
V +G
Sbjct: 280 VDIG 283
>pdb|1YRO|B Chain B, Crystal Structure Of Beta14,-Galactosyltransferase Mutant
Arg228lys In Complex With Alpha-Lactalbumin In The
Presence Of Udp-Galactose And Mn
pdb|1YRO|D Chain D, Crystal Structure Of Beta14,-Galactosyltransferase Mutant
Arg228lys In Complex With Alpha-Lactalbumin In The
Presence Of Udp-Galactose And Mn
Length = 286
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 62 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEK---ANPQRYEKL 118
+NGF N YWGWGGEDDD+ NR+ G+ + R I K M+RH ++K NPQR++++
Sbjct: 188 INGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRDKKNEPNPQRFDRI 247
Query: 119 YSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 154
+ DGL SL Y V++ +++ L+T V +G
Sbjct: 248 AHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 283
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 19 RYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 59
R++++ + DGL SL Y V++ +++ L+T V +G
Sbjct: 243 RFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 283
>pdb|1NMM|B Chain B, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1NMM|D Chain D, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1O0R|A Chain A, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
pdb|1O0R|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
Length = 286
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 62 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEK---ANPQRYEKL 118
+NGF N YWGWGGEDDD+ NR+ G+ + R I K M+RH ++K NPQR++++
Sbjct: 188 INGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRDKKNEPNPQRFDRI 247
Query: 119 YSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 154
+ DGL SL Y V++ +++ L+T V +G
Sbjct: 248 AHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 283
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 19 RYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 59
R++++ + DGL SL Y V++ +++ L+T V +G
Sbjct: 243 RFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 283
>pdb|2AE7|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AEC|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AEC|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AEC|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AES|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AES|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AES|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AH9|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2FY7|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-galactosyltransferase Mutant M339h In Apo Form
pdb|2FYA|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1, 4-Galactosyltransferase Mutant M339h Complex With
Manganese
pdb|2FYB|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-Galactosyltransferase Mutant M339h In Complex
With Mn And Udp-Galactose In Open Conformation
pdb|3EE5|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|4EE3|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE4|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE5|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EEA|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEG|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEM|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEO|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
Length = 287
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 62 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEK---ANPQRYEKL 118
+NGF N YWGWGGEDDD+ NR+ G+ I R + +RH ++K NPQR++++
Sbjct: 189 INGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRI 248
Query: 119 YSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 154
+ DGL SL Y+V+D +++ L+T V +G
Sbjct: 249 AHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIG 284
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 19 RYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 59
R++++ + DGL SL Y+V+D +++ L+T V +G
Sbjct: 244 RFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIG 284
>pdb|1TVY|A Chain A, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And Manganese
pdb|1TVY|B Chain B, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And Manganese
pdb|1TW1|A Chain A, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And Magnesium
pdb|1TW1|B Chain B, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And Magnesium
pdb|1TW5|A Chain A, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|1TW5|B Chain B, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|2FYC|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
pdb|2FYC|D Chain D, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
Length = 286
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 62 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEK---ANPQRYEKL 118
+NGF N YWGWGGEDDD+ NR+ G+ + R I K +RH ++K NPQR++++
Sbjct: 188 INGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRHIRHSRDKKNEPNPQRFDRI 247
Query: 119 YSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 154
+ DGL SL Y V++ +++ L+T V +G
Sbjct: 248 AHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 283
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 19 RYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 59
R++++ + DGL SL Y V++ +++ L+T V +G
Sbjct: 243 RFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 283
>pdb|2FYD|B Chain B, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase
In Complex With Alpha-Lactalbumin, Glucose, Mn, And
Udp-N- Acetylgalactosamine
pdb|2FYD|D Chain D, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase
In Complex With Alpha-Lactalbumin, Glucose, Mn, And
Udp-N- Acetylgalactosamine
Length = 286
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 62 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEK---ANPQRYEKL 118
+NGF N Y GWGGEDDD+ NR+ G+ + R I K M+RH ++K NPQR++++
Sbjct: 188 INGFPNNYCGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRDKKNEPNPQRFDRI 247
Query: 119 YSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 154
+ DGL SL Y V++ +++ L+T V +G
Sbjct: 248 AHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 283
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 19 RYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 59
R++++ + DGL SL Y V++ +++ L+T V +G
Sbjct: 243 RFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 283
>pdb|1NHE|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp
pdb|1NHE|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp
Length = 286
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 62 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEK---ANPQRYEKL 118
+NGF N YWGWGGEDDD+ NR+ G + R I K +RH ++K NPQR++++
Sbjct: 188 INGFPNNYWGWGGEDDDIYNRLAFRGXSVSRPNAVIGKCRXIRHSRDKKNEPNPQRFDRI 247
Query: 119 YSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 154
+ DGL SL Y V++ +++ L+T V +G
Sbjct: 248 AHTKETXLSDGLNSLTYXVLEVQRYPLYTKITVDIG 283
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 3 NGVDRSCRQV-------NRVLYSRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFL 55
N V CR + N R++++ + DGL SL Y V++ +++ L+T
Sbjct: 220 NAVIGKCRXIRHSRDKKNEPNPQRFDRIAHTKETXLSDGLNSLTYXVLEVQRYPLYTKIT 279
Query: 56 VQLG 59
V +G
Sbjct: 280 VDIG 283
>pdb|1PZY|B Chain B, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1PZY|D Chain D, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1PZT|A Chain A, Crystal Structure Of W314a-beta-1,4-galactosyltransferase
(b4gal-t1) Catalytic Domain Without Substrate
Length = 286
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 62 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEK---ANPQRYEKL 118
+NGF N YWG GGEDDD+ NR+ G+ + R I K M+RH ++K NPQR++++
Sbjct: 188 INGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRDKKNEPNPQRFDRI 247
Query: 119 YSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 154
+ DGL SL Y V++ +++ L+T V +G
Sbjct: 248 AHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 283
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 19 RYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 59
R++++ + DGL SL Y V++ +++ L+T V +G
Sbjct: 243 RFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 283
>pdb|3LW6|A Chain A, Crystal Structure Of Drosophila
Beta1,4-Galactosyltransferas
Length = 287
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 62 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIA-----KYSML--RHRKEKANPQR 114
+NG SN+YWGWG EDD+ R++ AGLQ+ R P +I +S + R+ +++ +
Sbjct: 173 MNGMSNQYWGWGLEDDEFFVRIRDAGLQVTR-PQNIKTGTNDTFSHIHNRYHRKRDTQKC 231
Query: 115 YEKLYSGHKRYKKDGLTSLKYKVI 138
+ + KR K GL ++KYK++
Sbjct: 232 FNQKEMTRKRDHKTGLDNVKYKIL 255
>pdb|2JEP|A Chain A, Native Family 5 Xyloglucanase From Paenibacillus Pabuli
pdb|2JEP|B Chain B, Native Family 5 Xyloglucanase From Paenibacillus Pabuli
pdb|2JEQ|A Chain A, Family 5 Xyloglucanase From Paenibacillus Pabuli In
Complex With Ligand
Length = 395
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 57 QLGELVNGFSNE-YWGWGGEDDDMSNRVKAAGLQIIRYP 94
QL VNG NE WG ++ +VKAAG + IR P
Sbjct: 51 QLEAAVNGTPNETAWGNPTVTPELIKKVKAAGFKSIRIP 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,800,741
Number of Sequences: 62578
Number of extensions: 188397
Number of successful extensions: 431
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 26
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)