Query psy13781
Match_columns 155
No_of_seqs 181 out of 577
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:21:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3916|consensus 100.0 4E-46 8.7E-51 311.4 6.8 148 8-155 217-370 (372)
2 cd00899 b4GalT Beta-4-Galactos 100.0 3E-37 6.5E-42 247.4 10.3 145 8-152 68-219 (219)
3 PF02709 Glyco_transf_7C: N-te 99.9 1.2E-22 2.6E-27 139.2 2.5 77 30-106 2-78 (78)
4 KOG3917|consensus 99.7 1.8E-17 4E-22 133.4 3.5 94 49-142 183-282 (310)
5 PF10111 Glyco_tranf_2_2: Glyc 98.7 6.5E-09 1.4E-13 85.5 3.5 47 49-95 170-216 (281)
6 KOG3916|consensus 98.7 6.2E-09 1.3E-13 88.2 3.2 51 10-60 320-370 (372)
7 KOG3588|consensus 98.3 1.3E-06 2.8E-11 75.3 6.5 55 50-106 386-440 (494)
8 cd06420 GT2_Chondriotin_Pol_N 98.1 4.2E-06 9.1E-11 62.6 4.5 53 48-100 127-179 (182)
9 cd00899 b4GalT Beta-4-Galactos 97.8 2.6E-05 5.6E-10 63.0 4.1 45 13-57 175-219 (219)
10 cd02510 pp-GalNAc-T pp-GalNAc- 97.7 3E-05 6.6E-10 63.6 3.9 48 48-95 172-219 (299)
11 PF05679 CHGN: Chondroitin N-a 97.1 0.0012 2.5E-08 59.1 6.5 54 50-105 412-469 (499)
12 cd04186 GT_2_like_c Subfamily 96.5 0.005 1.1E-07 44.4 4.6 48 47-95 112-159 (166)
13 COG1216 Predicted glycosyltran 96.2 0.01 2.3E-07 49.1 5.8 48 47-95 167-214 (305)
14 cd04184 GT2_RfbC_Mx_like Myxoc 96.2 0.0041 9E-08 47.0 2.7 47 50-98 152-198 (202)
15 cd06435 CESA_NdvC_like NdvC_li 96.0 0.0048 1E-07 48.1 2.5 45 48-95 159-203 (236)
16 cd06913 beta3GnTL1_like Beta 1 96.0 0.0077 1.7E-07 46.6 3.6 48 53-101 162-209 (219)
17 cd04185 GT_2_like_b Subfamily 95.1 0.018 4E-07 43.7 2.8 42 50-92 124-165 (202)
18 cd02526 GT2_RfbF_like RfbF is 95.0 0.02 4.3E-07 44.4 2.9 44 51-95 155-198 (237)
19 TIGR01556 rhamnosyltran L-rham 95.0 0.021 4.6E-07 46.1 3.1 43 52-95 153-195 (281)
20 cd02522 GT_2_like_a GT_2_like_ 94.7 0.028 6.1E-07 43.0 2.9 39 51-92 140-178 (221)
21 COG4092 Predicted glycosyltran 94.5 0.019 4.2E-07 48.1 1.7 34 52-85 182-215 (346)
22 cd02525 Succinoglycan_BP_ExoA 94.3 0.062 1.4E-06 41.5 4.1 46 48-95 157-202 (249)
23 cd06421 CESA_CelA_like CESA_Ce 94.2 0.055 1.2E-06 41.7 3.5 45 48-95 161-205 (234)
24 cd04192 GT_2_like_e Subfamily 94.1 0.07 1.5E-06 40.7 4.0 43 48-91 156-199 (229)
25 PRK14583 hmsR N-glycosyltransf 94.1 0.035 7.5E-07 48.5 2.4 44 49-95 232-275 (444)
26 cd06437 CESA_CaSu_A2 Cellulose 93.9 0.04 8.7E-07 43.0 2.3 42 51-95 166-207 (232)
27 PRK11204 N-glycosyltransferase 93.8 0.042 9E-07 47.1 2.3 44 49-95 211-254 (420)
28 cd02520 Glucosylceramide_synth 93.4 0.038 8.2E-07 42.2 1.3 48 47-95 124-171 (196)
29 cd04195 GT2_AmsE_like GT2_AmsE 93.2 0.03 6.5E-07 42.3 0.5 45 51-98 154-198 (201)
30 PF13632 Glyco_trans_2_3: Glyc 92.8 0.13 2.8E-06 38.9 3.5 46 47-95 72-118 (193)
31 PF13641 Glyco_tranf_2_3: Glyc 92.1 0.095 2.1E-06 40.4 2.0 43 48-93 160-202 (228)
32 cd04191 Glucan_BSP_ModH Glucan 91.3 0.3 6.4E-06 39.9 4.1 76 47-130 171-252 (254)
33 cd06433 GT_2_WfgS_like WfgS an 91.1 0.18 3.8E-06 37.3 2.4 48 51-100 146-193 (202)
34 KOG3736|consensus 89.6 0.11 2.4E-06 47.6 0.2 53 42-94 310-362 (578)
35 COG1215 Glycosyltransferases, 89.3 0.45 9.8E-06 40.4 3.8 77 47-135 214-290 (439)
36 cd06427 CESA_like_2 CESA_like_ 87.3 0.32 6.9E-06 38.3 1.4 43 50-95 164-206 (241)
37 TIGR03469 HonB hopene-associat 86.8 0.34 7.4E-06 41.5 1.5 46 48-94 210-255 (384)
38 TIGR03472 HpnI hopanoid biosyn 85.4 0.33 7.2E-06 41.4 0.7 47 47-94 200-246 (373)
39 cd00761 Glyco_tranf_GTA_type G 82.0 0.79 1.7E-05 31.5 1.4 39 50-89 115-153 (156)
40 TIGR03111 glyc2_xrt_Gpos1 puta 80.9 0.78 1.7E-05 40.1 1.2 43 50-95 218-261 (439)
41 PRK11498 bcsA cellulose syntha 74.7 3.4 7.4E-05 39.7 3.6 44 47-93 418-461 (852)
42 cd04190 Chitin_synth_C C-termi 74.4 4.1 8.8E-05 32.3 3.5 72 48-128 150-240 (244)
43 TIGR03030 CelA cellulose synth 73.5 4.1 8.9E-05 38.1 3.8 44 48-94 308-351 (713)
44 PF13712 Glyco_tranf_2_5: Glyc 73.2 3.6 7.9E-05 32.8 3.0 42 49-94 149-191 (217)
45 cd06434 GT2_HAS Hyaluronan syn 68.7 2.4 5.3E-05 32.5 1.0 43 52-95 157-207 (235)
46 PRK05454 glucosyltransferase M 63.2 7.1 0.00015 36.7 3.1 77 48-132 297-379 (691)
47 PF07312 DUF1459: Protein of u 60.7 3 6.5E-05 28.7 0.1 13 62-74 52-64 (84)
48 PRK10063 putative glycosyl tra 58.6 16 0.00034 29.3 4.1 42 59-102 156-197 (248)
49 PRK14716 bacteriophage N4 adso 51.1 14 0.00031 33.3 2.9 74 49-126 234-320 (504)
50 PF13506 Glyco_transf_21: Glyc 50.5 9 0.0002 29.3 1.3 46 48-94 102-147 (175)
51 cd06439 CESA_like_1 CESA_like_ 47.3 13 0.00029 28.7 1.9 41 49-95 183-223 (251)
52 KOG3738|consensus 47.2 4.6 9.9E-05 36.1 -0.9 51 42-92 288-338 (559)
53 KOG3737|consensus 38.1 7.1 0.00015 34.9 -1.1 52 43-94 329-380 (603)
54 PRK10018 putative glycosyl tra 36.0 56 0.0012 26.9 4.0 45 58-105 165-209 (279)
55 cd06442 DPM1_like DPM1_like re 32.9 44 0.00095 25.1 2.7 43 49-94 153-196 (224)
56 PF00289 CPSase_L_chain: Carba 30.7 29 0.00063 24.8 1.3 33 63-95 73-107 (110)
57 cd04188 DPG_synthase DPG_synth 30.2 37 0.00079 25.7 1.9 43 50-94 159-201 (211)
58 cd04196 GT_2_like_d Subfamily 25.5 59 0.0013 24.0 2.3 49 49-100 154-202 (214)
59 PLN02726 dolichyl-phosphate be 23.9 52 0.0011 25.7 1.7 45 48-94 167-211 (243)
No 1
>KOG3916|consensus
Probab=100.00 E-value=4e-46 Score=311.36 Aligned_cols=148 Identities=35% Similarity=0.632 Sum_probs=140.7
Q ss_pred ccccccCCC--hhhhHHHHh--cccccccccccceeeEeeeccCcceeEEeeehhcccccCCCCCcccCCCCChhHHHHH
Q psy13781 8 SCRQVNRVL--YSRYEKLYS--GHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRV 83 (155)
Q Consensus 8 ~~~~~n~~n--~~R~~~L~~--~~~r~~~DGLnsl~Yk~~~~~~~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl 83 (155)
.|--+++|. |+.-.+|+. .++|+.+.+++++.|++++...+|++++++++||.+||||||.|||||||||||..|+
T Consensus 217 dCfIFHDVDllPenDrNlY~C~~~PRH~sva~dk~gy~LPY~~~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv 296 (372)
T KOG3916|consen 217 DCFIFHDVDLLPENDRNLYGCPEQPRHMSVALDKFGYRLPYKEYFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRV 296 (372)
T ss_pred CEEEEecccccccCCCCccCCCCCCcchhhhhhhccccccchhhhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHH
Confidence 476677666 888888886 5699999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEecCCCceeEeeeec--CCCCCChhhHHHHhhcCeeeccCCCceeeEEEeEEEeeccEEEEEEEecC
Q psy13781 84 KAAGLQIIRYPPDIAKYSMLRH--RKEKANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGE 155 (155)
Q Consensus 84 ~~~g~~i~r~~~~~~~y~~i~H--~~~~~n~~r~~~l~~~~~~~~~dGL~sl~Y~~~~~~~~~lyt~i~vdi~~ 155 (155)
..+|++|+||+..+|||+||+| +++++|++|+++|..++.+|..||||||.|++++++.+||||||+|||++
T Consensus 297 ~~ag~~IsRp~~~igrYkMikH~~k~n~~n~~Ry~lL~~tk~r~~~DGLnsl~Y~~~~v~~~pLyt~itVDl~~ 370 (372)
T KOG3916|consen 297 QLAGMKISRPPPEIGRYKMIKHHDKGNEPNPGRYKLLRNTKERQTQDGLNSLKYQLLKVELDPLYTNITVDLGP 370 (372)
T ss_pred HhcCceeecCCCccceeEEeecccccCCCChHHHHHHHhhhhhhhhccccceeeeeeeeecccceEEEEEeccc
Confidence 9999999999999999999999 77899999999999999999999999999999999999999999999985
No 2
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=100.00 E-value=3e-37 Score=247.36 Aligned_cols=145 Identities=39% Similarity=0.601 Sum_probs=129.0
Q ss_pred ccccccCCC--hhhhHHHHh--cccccccccccceeeEeeeccCcceeEEeeehhcccccCCCCCcccCCCCChhHHHHH
Q psy13781 8 SCRQVNRVL--YSRYEKLYS--GHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRV 83 (155)
Q Consensus 8 ~~~~~n~~n--~~R~~~L~~--~~~r~~~DGLnsl~Yk~~~~~~~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl 83 (155)
.|--.+++. |....+++. ..+++.+.+++.+.|++++....|+++++++++|.+||||||.|||||+|||||..||
T Consensus 68 dc~i~hDVDllP~~~~~~y~~~~~p~H~s~~~~~~~~~lpy~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl 147 (219)
T cd00899 68 DCFIFHDVDLLPENDRNLYGCEEGPRHLSVPLDKFHYKLPYKTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRI 147 (219)
T ss_pred cEEEEecccccccCccccccCCCCCeEEEEeecccccccCcccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHH
Confidence 344444443 444444443 4588999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEecCCCceeEeeeecCCC---CCChhhHHHHhhcCeeeccCCCceeeEEEeEEEeeccEEEEEEE
Q psy13781 84 KAAGLQIIRYPPDIAKYSMLRHRKE---KANPQRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQ 152 (155)
Q Consensus 84 ~~~g~~i~r~~~~~~~y~~i~H~~~---~~n~~r~~~l~~~~~~~~~dGL~sl~Y~~~~~~~~~lyt~i~vd 152 (155)
..+|+++.|++..+++|.||+|+++ +.|++|++++..++.+||.|||++|.|+|++++..||||||+||
T Consensus 148 ~~~g~~~~r~~~~~~~~~hL~H~~~~r~~~N~~r~~~l~~~~~~~~~dGLnsl~Y~v~~~~~~pl~t~i~vd 219 (219)
T cd00899 148 KAAGLKITRPSGDTGRYKMIRHIHDKRNRDNPNRFALLQNSRERDHSDGLNSLKYKVLSIELAPLYTNILVD 219 (219)
T ss_pred HHCCCeEEeccCcccceeeeecCCCcccccCHHHHHHHHhhCeEeccCCccceEEEEEEEeccccEEEEEeC
Confidence 9999999999999999999999644 67999999999999999999999999999999999999999997
No 3
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=99.86 E-value=1.2e-22 Score=139.23 Aligned_cols=77 Identities=35% Similarity=0.626 Sum_probs=60.1
Q ss_pred cccccccceeeEeeeccCcceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCCCceeEeeeecC
Q psy13781 30 YKKDGLTSLKYKVIDTKQHKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHR 106 (155)
Q Consensus 30 ~~~DGLnsl~Yk~~~~~~~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~~~~~y~~i~H~ 106 (155)
+.+..+..+.++..+....++++++++++|.+||||||.|||||+||+||..||..+|+++.+++..+++|+++.|+
T Consensus 2 h~~~~~~~~~~~~~~~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~~~yh~~~H~ 78 (78)
T PF02709_consen 2 HLSPSIDEFNYKYPYPNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSIGRYHLWKHK 78 (78)
T ss_dssp EEETEEGGGTSS-SSTT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTTTEEEEEET-
T ss_pred CeeeccCcccCcCcCCCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCceEEEEEeecC
Confidence 34556667778888888889999999999999999999999999999999999999999999999999999988784
No 4
>KOG3917|consensus
Probab=99.68 E-value=1.8e-17 Score=133.41 Aligned_cols=94 Identities=29% Similarity=0.430 Sum_probs=75.4
Q ss_pred ceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCCC-ceeEeeeecCCCCCChhhH-----HHHhhcC
Q psy13781 49 KLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPD-IAKYSMLRHRKEKANPQRY-----EKLYSGH 122 (155)
Q Consensus 49 gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~~-~~~y~~i~H~~~~~n~~r~-----~~l~~~~ 122 (155)
|++..++.++|.+.||+||.|||||.|||||+.|+..+|+.+.||... .|.-.++.|.+++....|- .+.....
T Consensus 183 GGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqltRpsgi~Tg~~~TFrHiH~p~~RKRD~k~~~nQke~~r 262 (310)
T KOG3917|consen 183 GGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLTRPSGISTGSSNTFRHIHGPKHRKRDKKNDKNQKEIKR 262 (310)
T ss_pred ceeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEecccCcccCccchhhhhcChhhhhhhhhhhhhHHHHHh
Confidence 356789999999999999999999999999999999999999999874 4443667786554433332 2233456
Q ss_pred eeeccCCCceeeEEEeEEEe
Q psy13781 123 KRYKKDGLTSLKYKVIDTKQ 142 (155)
Q Consensus 123 ~~~~~dGL~sl~Y~~~~~~~ 142 (155)
++....||++++|.+.+++.
T Consensus 263 KrDh~~GL~~VkY~i~sr~~ 282 (310)
T KOG3917|consen 263 KRDHVSGLHDVKYLIDSRQL 282 (310)
T ss_pred hhcccccccceeeeeeeeee
Confidence 78889999999999998765
No 5
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.74 E-value=6.5e-09 Score=85.46 Aligned_cols=47 Identities=30% Similarity=0.435 Sum_probs=43.8
Q ss_pred ceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 49 KLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 49 gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
++.+.+.+++|++|+||+|.|.|||+||.||..||...|..+.+++.
T Consensus 170 s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~ 216 (281)
T PF10111_consen 170 SSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPD 216 (281)
T ss_pred ceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecChH
Confidence 48889999999999999999999999999999999999999987654
No 6
>KOG3916|consensus
Probab=98.74 E-value=6.2e-09 Score=88.24 Aligned_cols=51 Identities=33% Similarity=0.496 Sum_probs=48.8
Q ss_pred ccccCCChhhhHHHHhcccccccccccceeeEeeeccCcceeEEeeehhcc
Q psy13781 10 RQVNRVLYSRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGE 60 (155)
Q Consensus 10 ~~~n~~n~~R~~~L~~~~~r~~~DGLnsl~Yk~~~~~~~gl~t~i~~~~f~ 60 (155)
+++|++||+||++|.+++.||..|||||++|++++...+||||+|+++...
T Consensus 320 ~k~n~~n~~Ry~lL~~tk~r~~~DGLnsl~Y~~~~v~~~pLyt~itVDl~~ 370 (372)
T KOG3916|consen 320 DKGNEPNPGRYKLLRNTKERQTQDGLNSLKYQLLKVELDPLYTNITVDLGP 370 (372)
T ss_pred cccCCCChHHHHHHHhhhhhhhhccccceeeeeeeeecccceEEEEEeccc
Confidence 789999999999999999999999999999999999999999999998653
No 7
>KOG3588|consensus
Probab=98.32 E-value=1.3e-06 Score=75.33 Aligned_cols=55 Identities=35% Similarity=0.472 Sum_probs=48.7
Q ss_pred eeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCCCceeEeeeecC
Q psy13781 50 LFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHR 106 (155)
Q Consensus 50 l~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~~~~~y~~i~H~ 106 (155)
+.|.+.+.+|++|.|||..-.|||+||-||+.....+|+++.|.+. .|-+ +++|+
T Consensus 386 Gmtc~yrsd~~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p~-pGl~-H~~H~ 440 (494)
T KOG3588|consen 386 GMTCQYRSDFLTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTPE-PGLF-HLWHP 440 (494)
T ss_pred ceeEEeeccceeecCcceeeeccCcchHHHHHHHHhcCcEEEecCC-CceE-Eeecc
Confidence 5778899999999999999999999999999999999999999753 5666 47883
No 8
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.09 E-value=4.2e-06 Score=62.59 Aligned_cols=53 Identities=26% Similarity=0.464 Sum_probs=45.9
Q ss_pred cceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCCCceeE
Q psy13781 48 HKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKY 100 (155)
Q Consensus 48 ~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~~~~~y 100 (155)
.++.+.+.++.+.++.||++.|.+||+||.||..|+..+|+++.+..+.+..|
T Consensus 127 ~~~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~~~~~~ 179 (182)
T cd06420 127 RGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAAIVF 179 (182)
T ss_pred ccceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecccceee
Confidence 35778899999999999999999999999999999999998888765544444
No 9
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=97.78 E-value=2.6e-05 Score=63.00 Aligned_cols=45 Identities=40% Similarity=0.548 Sum_probs=43.1
Q ss_pred cCCChhhhHHHHhcccccccccccceeeEeeeccCcceeEEeeeh
Q psy13781 13 NRVLYSRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQ 57 (155)
Q Consensus 13 n~~n~~R~~~L~~~~~r~~~DGLnsl~Yk~~~~~~~gl~t~i~~~ 57 (155)
+++|+.|++++.....++..||||++.|++++...+|+||+|+++
T Consensus 175 ~~~N~~r~~~l~~~~~~~~~dGLnsl~Y~v~~~~~~pl~t~i~vd 219 (219)
T cd00899 175 NRDNPNRFALLQNSRERDHSDGLNSLKYKVLSIELAPLYTNILVD 219 (219)
T ss_pred cccCHHHHHHHHhhCeEeccCCccceEEEEEEEeccccEEEEEeC
Confidence 688999999999999999999999999999999999999999875
No 10
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=97.73 E-value=3e-05 Score=63.59 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=43.6
Q ss_pred cceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 48 HKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 48 ~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
.+..+++.++.|.+|+||++.|..||+||.||..|+..+|.++.-.+.
T Consensus 172 ~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~ 219 (299)
T cd02510 172 AGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPC 219 (299)
T ss_pred cceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeec
Confidence 356889999999999999999999999999999999999999877544
No 11
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=97.12 E-value=0.0012 Score=59.14 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=46.4
Q ss_pred eeEEeeehhcccc--cCCCCCcccCCCCChhHHHHHHhcC--ceEEecCCCceeEeeeec
Q psy13781 50 LFTWFLVQLGELV--NGFSNEYWGWGGEDDDMSNRVKAAG--LQIIRYPPDIAKYSMLRH 105 (155)
Q Consensus 50 l~t~i~~~~f~~v--NGf~n~~~GwG~EDddl~~Rl~~~g--~~i~r~~~~~~~y~~i~H 105 (155)
+.++|.+.||.++ .||+..-.|||+||-||+.++..++ +.+.|.... +-+ +++|
T Consensus 412 g~~~~YksDy~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~ep-~L~-h~yh 469 (499)
T PF05679_consen 412 GMVCFYKSDYMRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAVEP-GLV-HRYH 469 (499)
T ss_pred ceEEEEhhhhhhhcccccccccccccccHHHHHHHHHhCCCceEEEEccCC-CeE-EEec
Confidence 5789999999999 9999999999999999999999999 999997542 223 3566
No 12
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.47 E-value=0.005 Score=44.44 Aligned_cols=48 Identities=25% Similarity=0.355 Sum_probs=42.6
Q ss_pred CcceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 47 QHKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 47 ~~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
..+..+.+.++.+.+++||++.|-. ++||.||..|+...|.++...+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~~~ 159 (166)
T cd04186 112 VSGAFLLVRREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYVPQ 159 (166)
T ss_pred CceeeEeeeHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEccc
Confidence 5678899999999999999999877 66999999999999999987654
No 13
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=96.24 E-value=0.01 Score=49.08 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=42.4
Q ss_pred CcceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 47 QHKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 47 ~~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
..|+.+.+.++.|.+|.||++.|--+. ||.|+..|+..+|.++...+.
T Consensus 167 ~~G~~~li~~~~~~~vG~~de~~F~y~-eD~D~~~R~~~~G~~i~~~p~ 214 (305)
T COG1216 167 LSGACLLIRREAFEKVGGFDERFFIYY-EDVDLCLRARKAGYKIYYVPD 214 (305)
T ss_pred cceeeeEEcHHHHHHhCCCCcccceee-hHHHHHHHHHHcCCeEEEeec
Confidence 456778999999999999999999886 999999999999998887644
No 14
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.16 E-value=0.0041 Score=46.99 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=39.4
Q ss_pred eeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCCCce
Q psy13781 50 LFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIA 98 (155)
Q Consensus 50 l~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~~~~ 98 (155)
..+.+.++.+.+++||++.|- ++||.||..|+..+|.++...+....
T Consensus 152 ~~~~~~r~~~~~iggf~~~~~--~~eD~~l~~rl~~~g~~~~~~~~~~~ 198 (202)
T cd04184 152 HLLVYRRSLVRQVGGFREGFE--GAQDYDLVLRVSEHTDRIAHIPRVLY 198 (202)
T ss_pred ceEeEEHHHHHHhCCCCcCcc--cchhHHHHHHHHhccceEEEccHhhh
Confidence 456788999999999999876 67999999999999999887665433
No 15
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=96.01 E-value=0.0048 Score=48.05 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=39.3
Q ss_pred cceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 48 HKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 48 ~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
.|..+.+.++.|.+++||++.+ ..||.||..|+...|.++.-.+.
T Consensus 159 ~g~~~~~rr~~~~~iGgf~~~~---~~eD~dl~~r~~~~G~~~~~~~~ 203 (236)
T cd06435 159 HGTMCLIRRSALDDVGGWDEWC---ITEDSELGLRMHEAGYIGVYVAQ 203 (236)
T ss_pred ecceEEEEHHHHHHhCCCCCcc---ccchHHHHHHHHHCCcEEEEcch
Confidence 4567899999999999999876 37999999999999999987654
No 16
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=95.99 E-value=0.0077 Score=46.63 Aligned_cols=48 Identities=17% Similarity=0.003 Sum_probs=41.1
Q ss_pred EeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCCCceeEe
Q psy13781 53 WFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYS 101 (155)
Q Consensus 53 ~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~~~~~y~ 101 (155)
.+.++.|.++.||++.+.+++ ||.||..|+...|.++...+.....|+
T Consensus 162 ~~rr~~~~~~g~f~~~~~~~~-eD~~l~~r~~~~g~~i~~~~~~~~~yr 209 (219)
T cd06913 162 FCSREWFSHVGPFDEGGKGVP-EDLLFFYEHLRKGGGVYRVDRCLLLYR 209 (219)
T ss_pred eeehhHHhhcCCccchhccch-hHHHHHHHHHHcCCceEEEcceeeeee
Confidence 478999999999999887665 999999999999999988877666664
No 17
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.11 E-value=0.018 Score=43.68 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=37.2
Q ss_pred eeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEe
Q psy13781 50 LFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIR 92 (155)
Q Consensus 50 l~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r 92 (155)
.-+.+.++.+.++.||+..|..|| ||.|+..|+...|.++.-
T Consensus 124 ~~~~~~~~~~~~~g~~~~~~~~~~-eD~~~~~r~~~~G~~i~~ 165 (202)
T cd04185 124 VGVLISRRVVEKIGLPDKEFFIWG-DDTEYTLRASKAGPGIYV 165 (202)
T ss_pred EEEEEeHHHHHHhCCCChhhhccc-hHHHHHHHHHHcCCcEEe
Confidence 456799999999999999988776 999999999999999933
No 18
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=95.04 E-value=0.02 Score=44.38 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=38.0
Q ss_pred eEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 51 FTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 51 ~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
.+.+.++.|.+++||++.+- .++||.||..|+..+|.++...+.
T Consensus 155 ~~~~rr~~~~~~ggfd~~~~-~~~eD~d~~~r~~~~G~~~~~~~~ 198 (237)
T cd02526 155 GSLISLEALEKVGGFDEDLF-IDYVDTEWCLRARSKGYKIYVVPD 198 (237)
T ss_pred ceEEcHHHHHHhCCCCHHHc-CccchHHHHHHHHHcCCcEEEEcC
Confidence 45789999999999999886 578999999999999998876544
No 19
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=95.03 E-value=0.021 Score=46.12 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=38.0
Q ss_pred EEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 52 TWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 52 t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
+.+.++.|.+|+||++.|..++ ||.|+..|+..+|.++...+.
T Consensus 153 ~li~~~~~~~iG~fde~~fi~~-~D~e~~~R~~~~G~~i~~~~~ 195 (281)
T TIGR01556 153 CLITREVYQRLGMMDEELFIDH-VDTEWSLRAQNYGIPLYIDPD 195 (281)
T ss_pred ceeeHHHHHHhCCccHhhcccc-hHHHHHHHHHHCCCEEEEeCC
Confidence 4689999999999999998764 999999999999999887654
No 20
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.72 E-value=0.028 Score=42.99 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=35.4
Q ss_pred eEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEe
Q psy13781 51 FTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIR 92 (155)
Q Consensus 51 ~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r 92 (155)
-+.+.++.|.++.||++.+ ++||.||..|+...|.++.-
T Consensus 140 ~~~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G~~~~~ 178 (221)
T cd02522 140 GLFIRRELFEELGGFPELP---LMEDVELVRRLRRRGRPALL 178 (221)
T ss_pred eEEEEHHHHHHhCCCCccc---cccHHHHHHHHHhCCCEEEc
Confidence 4678899999999999999 67999999999999998875
No 21
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=94.53 E-value=0.019 Score=48.13 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=31.0
Q ss_pred EEeeehhcccccCCCCCcccCCCCChhHHHHHHh
Q psy13781 52 TWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKA 85 (155)
Q Consensus 52 t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~ 85 (155)
.-|.+.+|.+..||+|.|-|.|.||.||..|+-.
T Consensus 182 ~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l 215 (346)
T COG4092 182 FLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGL 215 (346)
T ss_pred EEEehhHHHHhcCCccccccCCchhHHHHHHHHH
Confidence 3578899999999999999999999999999765
No 22
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=94.32 E-value=0.062 Score=41.55 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=39.8
Q ss_pred cceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 48 HKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 48 ~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
.++.+.+.++.+.++.||++.|- .+||.||..|+..+|.++.-.+.
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~~~--~~eD~~l~~r~~~~G~~~~~~~~ 202 (249)
T cd02525 157 TVHHGAYRREVFEKVGGFDESLV--RNEDAELNYRLRKAGYKIWLSPD 202 (249)
T ss_pred ccccceEEHHHHHHhCCCCcccC--ccchhHHHHHHHHcCcEEEEcCC
Confidence 35677899999999999999875 36999999999999999987654
No 23
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=94.22 E-value=0.055 Score=41.65 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=38.8
Q ss_pred cceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 48 HKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 48 ~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
.+..+.+.++.|.++.||++.+. +||.++..|+...|.++...+.
T Consensus 161 ~g~~~~~r~~~~~~ig~~~~~~~---~eD~~l~~r~~~~g~~i~~~~~ 205 (234)
T cd06421 161 CGSGAVVRREALDEIGGFPTDSV---TEDLATSLRLHAKGWRSVYVPE 205 (234)
T ss_pred cCceeeEeHHHHHHhCCCCccce---eccHHHHHHHHHcCceEEEecC
Confidence 35688999999999999997665 6999999999999999877544
No 24
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.15 E-value=0.07 Score=40.72 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=35.4
Q ss_pred cceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCc-eEE
Q psy13781 48 HKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGL-QII 91 (155)
Q Consensus 48 ~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~-~i~ 91 (155)
.+..+.+.++.|.++.||++.+- ...||+|+..|+..+|. ++.
T Consensus 156 ~g~~~~~rr~~~~~~ggf~~~~~-~~~eD~~~~~~~~~~g~~~~~ 199 (229)
T cd04192 156 NGANMAYRKEAFFEVGGFEGNDH-IASGDDELLLAKVASKYPKVA 199 (229)
T ss_pred ccceEEEEHHHHHHhcCCccccc-cccCCHHHHHHHHHhCCCCEE
Confidence 35667899999999999997654 45699999999999998 554
No 25
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=94.07 E-value=0.035 Score=48.50 Aligned_cols=44 Identities=18% Similarity=0.112 Sum_probs=38.0
Q ss_pred ceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 49 KLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 49 gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
|..+.+.++.+.+++||++... .||.|+..|+..+|.++.-.+.
T Consensus 232 G~~~~~rr~al~~vGg~~~~~i---~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 232 GVVAAFRRRALADVGYWSPDMI---TEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred CceeEEEHHHHHHcCCCCCCcc---cccHHHHHHHHHcCCeEEEeec
Confidence 5678899999999999998875 5999999999999998876543
No 26
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=93.95 E-value=0.04 Score=42.95 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=35.5
Q ss_pred eEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 51 FTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 51 ~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
.+.+.++.+.+++||++... .||.||..|+...|.++...+.
T Consensus 166 ~~~~rr~~~~~vgg~~~~~~---~ED~~l~~rl~~~G~~~~~~~~ 207 (232)
T cd06437 166 AGVWRKECIEDAGGWNHDTL---TEDLDLSYRAQLKGWKFVYLDD 207 (232)
T ss_pred hhhhhHHHHHHhCCCCCCcc---hhhHHHHHHHHHCCCeEEEecc
Confidence 34578999999999998753 6999999999999998887654
No 27
>PRK11204 N-glycosyltransferase; Provisional
Probab=93.78 E-value=0.042 Score=47.13 Aligned_cols=44 Identities=25% Similarity=0.204 Sum_probs=38.5
Q ss_pred ceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 49 KLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 49 gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
|..+.+.++.+.+++||++..- .||.|+..|+..+|.++.-.+.
T Consensus 211 G~~~~~rr~~l~~vgg~~~~~~---~ED~~l~~rl~~~G~~i~~~p~ 254 (420)
T PRK11204 211 GVITAFRKSALHEVGYWSTDMI---TEDIDISWKLQLRGWDIRYEPR 254 (420)
T ss_pred ceeeeeeHHHHHHhCCCCCCcc---cchHHHHHHHHHcCCeEEeccc
Confidence 5678899999999999998875 5999999999999999887654
No 28
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=93.43 E-value=0.038 Score=42.21 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=38.6
Q ss_pred CcceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 47 QHKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 47 ~~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
..+..+.+.++.|.+++||+. +.....||-||..|+...|.++.-.+.
T Consensus 124 ~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~~l~~rl~~~G~~i~~~~~ 171 (196)
T cd02520 124 AFGKSMALRREVLDAIGGFEA-FADYLAEDYFLGKLIWRLGYRVVLSPY 171 (196)
T ss_pred ccCceeeeEHHHHHhccChHH-HhHHHHHHHHHHHHHHHcCCeEEEcch
Confidence 334678899999999999975 333457999999999999999976544
No 29
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=93.24 E-value=0.03 Score=42.28 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=37.1
Q ss_pred eEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCCCce
Q psy13781 51 FTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIA 98 (155)
Q Consensus 51 ~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~~~~ 98 (155)
.+.+.++.+.++.||++. .++||.||..|+..+|.++...+....
T Consensus 154 ~~~~rr~~~~~~g~~~~~---~~~eD~~~~~r~~~~g~~~~~~~~~~~ 198 (201)
T cd04195 154 TVMFRKSKVLAVGGYQDL---PLVEDYALWARMLANGARFANLPEILV 198 (201)
T ss_pred HHhhhHHHHHHcCCcCCC---CCchHHHHHHHHHHcCCceecccHHHh
Confidence 347889999999999976 679999999999999998877654333
No 30
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=92.81 E-value=0.13 Score=38.88 Aligned_cols=46 Identities=28% Similarity=0.301 Sum_probs=38.6
Q ss_pred CcceeEEeeehhcccccCCC-CCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 47 QHKLFTWFLVQLGELVNGFS-NEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 47 ~~gl~t~i~~~~f~~vNGf~-n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
..|.++.+.++.+.+|.||+ +... + ||.|+..|+..+|.++...+.
T Consensus 72 ~~G~~~~~r~~~l~~vg~~~~~~~~--~-ED~~l~~~l~~~G~~~~~~~~ 118 (193)
T PF13632_consen 72 LSGSGMLFRREALREVGGFDDPFSI--G-EDMDLGFRLRRAGYRIVYVPD 118 (193)
T ss_pred ccCcceeeeHHHHHHhCcccccccc--c-chHHHHHHHHHCCCEEEEecc
Confidence 45678999999999999999 4444 3 999999999999998877654
No 31
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=92.12 E-value=0.095 Score=40.39 Aligned_cols=43 Identities=33% Similarity=0.261 Sum_probs=32.0
Q ss_pred cceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEec
Q psy13781 48 HKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY 93 (155)
Q Consensus 48 ~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~ 93 (155)
.|..+.|.++.+.++.||+. ...+||.|+..|+...|.++...
T Consensus 160 ~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~~~~~ 202 (228)
T PF13641_consen 160 SGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWRIVYA 202 (228)
T ss_dssp --TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--EEEE
T ss_pred cCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCcEEEE
Confidence 46788999999999999999 33459999999999999999874
No 32
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=91.27 E-value=0.3 Score=39.88 Aligned_cols=76 Identities=13% Similarity=0.045 Sum_probs=52.5
Q ss_pred CcceeEEeeehhcccccCCCC--CcccCC----CCChhHHHHHHhcCceEEecCCCceeEeeeecCCCCCChhhHHHHhh
Q psy13781 47 QHKLFTWFLVQLGELVNGFSN--EYWGWG----GEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYS 120 (155)
Q Consensus 47 ~~gl~t~i~~~~f~~vNGf~n--~~~GwG----~EDddl~~Rl~~~g~~i~r~~~~~~~y~~i~H~~~~~n~~r~~~l~~ 120 (155)
..|-++.+.++.+.++.|++. .+-||+ -||.++..|+..+|.++.-.+..++.+.. .|+-+..+.+
T Consensus 171 ~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~~~~~--------~p~~~~~~~~ 242 (254)
T cd04191 171 YWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDLEGSYEE--------CPPTLIDFLK 242 (254)
T ss_pred ccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCCcceEeE--------CCCCHHHHHH
Confidence 346788899999999999985 677885 58999999999999998876544443421 2223333444
Q ss_pred cCeeeccCCC
Q psy13781 121 GHKRYKKDGL 130 (155)
Q Consensus 121 ~~~~~~~dGL 130 (155)
.+.||+.-++
T Consensus 243 qr~RW~~G~~ 252 (254)
T cd04191 243 RDRRWCQGNL 252 (254)
T ss_pred HHHHHHhhcC
Confidence 5556655444
No 33
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.10 E-value=0.18 Score=37.31 Aligned_cols=48 Identities=29% Similarity=0.350 Sum_probs=37.4
Q ss_pred eEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCCCceeE
Q psy13781 51 FTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKY 100 (155)
Q Consensus 51 ~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~~~~~y 100 (155)
-+.+.++.+.+++||++.+- + +||.|+..|+...|..+.-.+.....|
T Consensus 146 ~~~~~~~~~~~~~~f~~~~~-~-~~D~~~~~r~~~~g~~~~~~~~~~~~~ 193 (202)
T cd06433 146 ATFFRRSLFEKYGGFDESYR-I-AADYDLLLRLLLAGKIFKYLPEVLAAF 193 (202)
T ss_pred ceEEEHHHHHHhCCCchhhC-c-hhhHHHHHHHHHcCCceEecchhhhhh
Confidence 34688999999999998875 3 479999999999999986544434433
No 34
>KOG3736|consensus
Probab=89.58 E-value=0.11 Score=47.56 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=47.2
Q ss_pred eeeccCcceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecC
Q psy13781 42 VIDTKQHKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 94 (155)
Q Consensus 42 ~~~~~~~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~ 94 (155)
+.++...|+.++|.++-|..+.+||+..-.||||--||..|+..-|-.+.-.+
T Consensus 310 irsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~P 362 (578)
T KOG3736|consen 310 IRSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVP 362 (578)
T ss_pred cCCcccCCceEEeeHHHHhhccCccccccccChhhceeeEEEeccCCeEEecC
Confidence 45667778999999999999999999999999999999999999888776544
No 35
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=89.34 E-value=0.45 Score=40.45 Aligned_cols=77 Identities=21% Similarity=0.329 Sum_probs=60.7
Q ss_pred CcceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCCCceeEeeeecCCCCCChhhHHHHhhcCeeec
Q psy13781 47 QHKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSGHKRYK 126 (155)
Q Consensus 47 ~~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~~~~~y~~i~H~~~~~n~~r~~~l~~~~~~~~ 126 (155)
..|..+++.++...+++|+++... .||.++..|+...|.++...+.. +-+. ..|+-+..+.+++.||+
T Consensus 214 ~~G~~~~~rr~aL~~~g~~~~~~i---~ED~~lt~~l~~~G~~~~~~~~~------~~~~---~~p~t~~~~~~Qr~RW~ 281 (439)
T COG1215 214 LSGSSSAFRRSALEEVGGWLEDTI---TEDADLTLRLHLRGYRVVYVPEA------IVWT---EAPETLKELWRQRLRWA 281 (439)
T ss_pred EcceeeeEEHHHHHHhCCCCCCce---eccHHHHHHHHHCCCeEEEeecc------eEee---eCcccHHHHHHHHHHHH
Confidence 456788999999999999999988 69999999999999998875443 1221 24555666777888999
Q ss_pred cCCCceeeE
Q psy13781 127 KDGLTSLKY 135 (155)
Q Consensus 127 ~dGL~sl~Y 135 (155)
.-++..+.+
T Consensus 282 ~g~~~~~~~ 290 (439)
T COG1215 282 RGGLQVLLL 290 (439)
T ss_pred cccceeeeh
Confidence 888888765
No 36
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=87.27 E-value=0.32 Score=38.27 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=35.7
Q ss_pred eeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 50 LFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 50 l~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
..+.+.++.|.+++||++.. + .||.|+..|+...|.++...+.
T Consensus 164 ~~~~~rr~~~~~vgg~~~~~--~-~eD~~l~~rl~~~G~r~~~~~~ 206 (241)
T cd06427 164 TSNHFRTDVLRELGGWDPFN--V-TEDADLGLRLARAGYRTGVLNS 206 (241)
T ss_pred chHHhhHHHHHHcCCCCccc--c-hhhHHHHHHHHHCCceEEEecc
Confidence 44678999999999998742 2 6999999999999999887643
No 37
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=86.78 E-value=0.34 Score=41.50 Aligned_cols=46 Identities=15% Similarity=-0.051 Sum_probs=38.1
Q ss_pred cceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecC
Q psy13781 48 HKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 94 (155)
Q Consensus 48 ~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~ 94 (155)
.|..+.+.++.|.++.||++.+.- -.||.|+..|++.+|.++.-..
T Consensus 210 ~G~~~lirr~~~~~vGGf~~~~~~-~~ED~~L~~r~~~~G~~v~~~~ 255 (384)
T TIGR03469 210 AGGCILIRREALERIGGIAAIRGA-LIDDCTLAAAVKRSGGRIWLGL 255 (384)
T ss_pred cceEEEEEHHHHHHcCCHHHHhhC-cccHHHHHHHHHHcCCcEEEEe
Confidence 357889999999999999975544 3699999999999998777543
No 38
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=85.45 E-value=0.33 Score=41.36 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=37.7
Q ss_pred CcceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecC
Q psy13781 47 QHKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 94 (155)
Q Consensus 47 ~~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~ 94 (155)
..|..+.+.++.|.+++||++..- .-.||-||..|+..+|.++.-.+
T Consensus 200 ~~G~~~a~RR~~l~~iGGf~~~~~-~~~ED~~l~~~i~~~G~~v~~~~ 246 (373)
T TIGR03472 200 CFGATMALRRATLEAIGGLAALAH-HLADDYWLGELVRALGLRVVLAP 246 (373)
T ss_pred ccChhhheeHHHHHHcCChHHhcc-cchHHHHHHHHHHHcCCeEEecc
Confidence 345677999999999999986322 22499999999999999998653
No 39
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=82.04 E-value=0.79 Score=31.46 Aligned_cols=39 Identities=28% Similarity=0.261 Sum_probs=33.7
Q ss_pred eeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCce
Q psy13781 50 LFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQ 89 (155)
Q Consensus 50 l~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~ 89 (155)
+.+.+.++.+.++.|+++.+.+| +||.++..++...|..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~ed~~~~~~~~~~g~~ 153 (156)
T cd00761 115 GNLLFRRELLEEIGGFDEALLSG-EEDDDFLLRLLRGGKV 153 (156)
T ss_pred chheeeHHHHHHhCCcchHhcCC-cchHHHHHHHHhhccc
Confidence 77789999999999999888765 8999999999887754
No 40
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=80.89 E-value=0.78 Score=40.08 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=33.8
Q ss_pred eeEEeeehhcccccCCCCCcccCCCCChhHHHHHHh-cCceEEecCC
Q psy13781 50 LFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKA-AGLQIIRYPP 95 (155)
Q Consensus 50 l~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~-~g~~i~r~~~ 95 (155)
..+++.++.+.+++||++..- +||.|+..|+.. .|.++.-.+.
T Consensus 218 a~~~~Rr~~l~~vggf~~~~i---~ED~~l~~rl~~~~g~kv~~~~~ 261 (439)
T TIGR03111 218 AFSAFRRETILKTQLYNSETV---GEDTDMTFQIRELLDGKVYLCEN 261 (439)
T ss_pred HHHhhhHHHHHHhCCCCCCCc---CccHHHHHHHHHhcCCeEEECCC
Confidence 445789999999999997754 799999999964 5777665543
No 41
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=74.70 E-value=3.4 Score=39.70 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=37.3
Q ss_pred CcceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEec
Q psy13781 47 QHKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRY 93 (155)
Q Consensus 47 ~~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~ 93 (155)
..|..+.+.++.+.+|+||++... .||.|+..|+..+|.++.-.
T Consensus 418 ~~Gs~aviRReaLeeVGGfd~~ti---tED~dlslRL~~~Gyrv~yl 461 (852)
T PRK11498 418 FCGSCAVIRRKPLDEIGGIAVETV---TEDAHTSLRLHRRGYTSAYM 461 (852)
T ss_pred cccceeeeEHHHHHHhcCCCCCcc---CccHHHHHHHHHcCCEEEEE
Confidence 346677899999999999998743 69999999999999987754
No 42
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=74.39 E-value=4.1 Score=32.31 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=45.4
Q ss_pred cceeEEeeehhcccccCCCCCc-----------ccC------CCCChhHHHHHHhcCceEEe--cCCCceeEeeeecCCC
Q psy13781 48 HKLFTWFLVQLGELVNGFSNEY-----------WGW------GGEDDDMSNRVKAAGLQIIR--YPPDIAKYSMLRHRKE 108 (155)
Q Consensus 48 ~gl~t~i~~~~f~~vNGf~n~~-----------~Gw------G~EDddl~~Rl~~~g~~i~r--~~~~~~~y~~i~H~~~ 108 (155)
.|..+++.++.+..++|+...+ .|+ =+||.+|..|+...|.++.. .+..++ |. .
T Consensus 150 ~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~a~~-~~-----~- 222 (244)
T cd04190 150 PGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKYLYVPGAVA-ET-----D- 222 (244)
T ss_pred CCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEEEEecccEE-EE-----E-
Confidence 3567789999999998875421 111 26999999999999988765 322222 21 1
Q ss_pred CCChhhHHHHhhcCeeeccC
Q psy13781 109 KANPQRYEKLYSGHKRYKKD 128 (155)
Q Consensus 109 ~~n~~r~~~l~~~~~~~~~d 128 (155)
-|..++.+.+.+.||..-
T Consensus 223 --~p~s~~~~~~QR~RW~~g 240 (244)
T cd04190 223 --VPETFVELLSQRRRWINS 240 (244)
T ss_pred --CCCCHHHHHHHhHhhhcc
Confidence 223345555666677543
No 43
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=73.55 E-value=4.1 Score=38.10 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=37.1
Q ss_pred cceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecC
Q psy13781 48 HKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 94 (155)
Q Consensus 48 ~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~ 94 (155)
.|..+.+.++.+.+|+||++..- .||.|+..|+..+|.++...+
T Consensus 308 ~Gs~~~iRR~al~~iGGf~~~~v---tED~~l~~rL~~~G~~~~y~~ 351 (713)
T TIGR03030 308 CGSAAVLRREALDEIGGIAGETV---TEDAETALKLHRRGWNSAYLD 351 (713)
T ss_pred cCceeEEEHHHHHHcCCCCCCCc---CcHHHHHHHHHHcCCeEEEec
Confidence 35677899999999999997654 799999999999999876543
No 44
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=73.24 E-value=3.6 Score=32.75 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=27.3
Q ss_pred ceeEEeeehhcccccCCCCC-cccCCCCChhHHHHHHhcCceEEecC
Q psy13781 49 KLFTWFLVQLGELVNGFSNE-YWGWGGEDDDMSNRVKAAGLQIIRYP 94 (155)
Q Consensus 49 gl~t~i~~~~f~~vNGf~n~-~~GwG~EDddl~~Rl~~~g~~i~r~~ 94 (155)
|+.+++.++.+ +|++. |.||-.-|.|+..+++.+|.++.-++
T Consensus 149 g~ll~~~~dv~----~fde~~~~gfH~Ydvd~cl~~~~~G~~v~~~~ 191 (217)
T PF13712_consen 149 GLLLATQKDVP----RFDEDLFTGFHFYDVDQCLEARRAGYRVVVPP 191 (217)
T ss_dssp TTEEEEETTB---------SS--SSSSHHHHHHHHHHHTT-EEEE--
T ss_pred ceEEEEEcccC----CCCccccCCcchHHHHHHHHHHHhCCEEEecC
Confidence 45666666666 99999 99999999999999999999996654
No 45
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=68.66 E-value=2.4 Score=32.50 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=30.5
Q ss_pred EEeeehhcccccCCCCCc---cc-----CCCCChhHHHHHHhcCceEEecCC
Q psy13781 52 TWFLVQLGELVNGFSNEY---WG-----WGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 52 t~i~~~~f~~vNGf~n~~---~G-----wG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
+.+.++.+.++ ||++.| ++ -.+||.+|..|+...|.++.-.+.
T Consensus 157 ~~~rr~~l~~~-~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~ 207 (235)
T cd06434 157 AAYRTEILKDF-LFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYT 207 (235)
T ss_pred HHHHHHHHhhh-hhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecC
Confidence 34566767666 566555 12 247999999999999999877543
No 46
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=63.17 E-value=7.1 Score=36.68 Aligned_cols=77 Identities=16% Similarity=0.098 Sum_probs=52.8
Q ss_pred cceeEEeeehhcccccCCCC--CcccCCCC----ChhHHHHHHhcCceEEecCCCceeEeeeecCCCCCChhhHHHHhhc
Q psy13781 48 HKLFTWFLVQLGELVNGFSN--EYWGWGGE----DDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSG 121 (155)
Q Consensus 48 ~gl~t~i~~~~f~~vNGf~n--~~~GwG~E----Dddl~~Rl~~~g~~i~r~~~~~~~y~~i~H~~~~~n~~r~~~l~~~ 121 (155)
.|-+..+.++.|.++.|.+. +.-|||++ |.++..++..+|.++.-.+...+.|.. .|+.+..+.+.
T Consensus 297 ~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~~~~ee--------~P~tl~~~~~q 368 (691)
T PRK05454 297 WGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPDLPGSYEE--------LPPNLLDELKR 368 (691)
T ss_pred ccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCcccccccc--------CCCCHHHHHHH
Confidence 35667789999999999876 56778754 999999999999998876554444532 23334444445
Q ss_pred CeeeccCCCce
Q psy13781 122 HKRYKKDGLTS 132 (155)
Q Consensus 122 ~~~~~~dGL~s 132 (155)
+.||+.-++..
T Consensus 369 r~RW~~G~lQ~ 379 (691)
T PRK05454 369 DRRWCQGNLQH 379 (691)
T ss_pred HHHHHhchHHH
Confidence 55666555543
No 47
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=60.73 E-value=3 Score=28.72 Aligned_cols=13 Identities=31% Similarity=1.242 Sum_probs=10.7
Q ss_pred ccCCCCCcccCCC
Q psy13781 62 VNGFSNEYWGWGG 74 (155)
Q Consensus 62 vNGf~n~~~GwG~ 74 (155)
.--|+..|||||-
T Consensus 52 AaAYPsv~waWGS 64 (84)
T PF07312_consen 52 AAAYPSVYWAWGS 64 (84)
T ss_pred cccCcceeeeecc
Confidence 4569999999994
No 48
>PRK10063 putative glycosyl transferase; Provisional
Probab=58.62 E-value=16 Score=29.34 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=33.0
Q ss_pred cccccCCCCCcccCCCCChhHHHHHHhcCceEEecCCCceeEee
Q psy13781 59 GELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSM 102 (155)
Q Consensus 59 f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~~~~~y~~ 102 (155)
..+..||++.|. -.||-||..|+...|.++...+.....|.|
T Consensus 156 ~~~~~~fd~~~~--~~~Dydl~lrl~~~g~~~~~v~~~l~~y~~ 197 (248)
T PRK10063 156 GLKKWRYDLQYK--VSSDYALAARLYKAGYAFKKLNGLVSEFSM 197 (248)
T ss_pred HHhcCCCCcccc--hHHhHHHHHHHHHcCCcEEEcCceeEEEeC
Confidence 344568988764 248999999999999999888777777754
No 49
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=51.06 E-value=14 Score=33.32 Aligned_cols=74 Identities=22% Similarity=0.216 Sum_probs=48.1
Q ss_pred ceeEEeeehhcccc----cC--CCCCcccCCCCChhHHHHHHhcCceEEecCCCceeEeeeecC-------CCCCChhhH
Q psy13781 49 KLFTWFLVQLGELV----NG--FSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHR-------KEKANPQRY 115 (155)
Q Consensus 49 gl~t~i~~~~f~~v----NG--f~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~~~~~y~~i~H~-------~~~~n~~r~ 115 (155)
|..+.|.++.+.++ +| |++..- -||.|+..|+...|.++.-.+..+. |...... -.+.-|..+
T Consensus 234 Gtg~afRR~aLe~l~~~~GG~~fd~~sL---TED~dLglRL~~~G~rv~y~p~ai~-~~~~~~~~~~~~v~t~e~~P~t~ 309 (504)
T PRK14716 234 GVGTAFSRRALERLAAERGGQPFDSDSL---TEDYDIGLRLKRAGFRQIFVRVRAD-DTTDRPDRRGEPIATREFFPDTF 309 (504)
T ss_pred CeeEEeEHHHHHHHHhhcCCCCCCCCCc---chHHHHHHHHHHCCCEEEEeccccc-ccccccccccccccccccCccCH
Confidence 55789999999998 33 876544 6999999999999999876543221 1000000 112346666
Q ss_pred HHHhhcCeeec
Q psy13781 116 EKLYSGHKRYK 126 (155)
Q Consensus 116 ~~l~~~~~~~~ 126 (155)
+.+.+++.||.
T Consensus 310 ~a~~rQR~RW~ 320 (504)
T PRK14716 310 KAAVRQKARWI 320 (504)
T ss_pred HHHHHHHHHHH
Confidence 66666777774
No 50
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=50.45 E-value=9 Score=29.31 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=37.5
Q ss_pred cceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecC
Q psy13781 48 HKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 94 (155)
Q Consensus 48 ~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~ 94 (155)
.|.-+.+.++.+.++.||.. +...=.||-.|+.++...|+++.-.+
T Consensus 102 ~G~~m~~rr~~L~~~GG~~~-l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 102 WGGSMAFRREALEEIGGFEA-LADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred ecceeeeEHHHHHHcccHHH-HhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 35678999999999999874 33333699999999999999998764
No 51
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=47.34 E-value=13 Score=28.73 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=30.0
Q ss_pred ceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCC
Q psy13781 49 KLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 49 gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
++.+.+.++.+. ||+...+ .||.+|..|+...|.++...+.
T Consensus 183 g~~~~~rr~~~~---~~~~~~~---~eD~~l~~~~~~~G~~~~~~~~ 223 (251)
T cd06439 183 GAIYAIRRELFR---PLPADTI---NDDFVLPLRIARQGYRVVYEPD 223 (251)
T ss_pred chHHHhHHHHhc---CCCcccc---hhHHHHHHHHHHcCCeEEeccc
Confidence 445556676666 6765543 5899999999999998876544
No 52
>KOG3738|consensus
Probab=47.19 E-value=4.6 Score=36.07 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=44.0
Q ss_pred eeeccCcceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEe
Q psy13781 42 VIDTKQHKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIR 92 (155)
Q Consensus 42 ~~~~~~~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r 92 (155)
+.++...|+.+.|.++-|....-|+-..-=||||..||..|+...|-.+.=
T Consensus 288 irtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEI 338 (559)
T KOG3738|consen 288 IRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEI 338 (559)
T ss_pred ccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeEE
Confidence 345556678999999999999999999999999999999999998866543
No 53
>KOG3737|consensus
Probab=38.08 E-value=7.1 Score=34.86 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=46.0
Q ss_pred eeccCcceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecC
Q psy13781 43 IDTKQHKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 94 (155)
Q Consensus 43 ~~~~~~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~ 94 (155)
.+....|+-++|.++-|....-|+....=||||.-++...+...|-+|...+
T Consensus 329 RSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fVP 380 (603)
T KOG3737|consen 329 RSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFVP 380 (603)
T ss_pred CCcccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEEE
Confidence 4566667899999999999999999999999999999999998888877654
No 54
>PRK10018 putative glycosyl transferase; Provisional
Probab=36.01 E-value=56 Score=26.92 Aligned_cols=45 Identities=13% Similarity=-0.011 Sum_probs=30.4
Q ss_pred hcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCCCceeEeeeec
Q psy13781 58 LGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRH 105 (155)
Q Consensus 58 ~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~~~~~y~~i~H 105 (155)
...+..||++.+- ..||-||..|+...+-.....+.....|+ +.|
T Consensus 165 ~~~~~~~fd~~~~--~~eDydlwlrl~~~~~~~~~~~~~l~~y~-~~~ 209 (279)
T PRK10018 165 WRFKECLFDTELK--AAQDYDIFLRMVVEYGEPWKVEEATQILH-INH 209 (279)
T ss_pred hhhhhcccCCCCC--ccccHHHHHHHHHhcCceEeeccceEEEE-cCC
Confidence 3345568988766 47999999999887766555544445554 444
No 55
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=32.89 E-value=44 Score=25.11 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=31.6
Q ss_pred ceeEEeeehhcccccCCCCCcccCC-CCChhHHHHHHhcCceEEecC
Q psy13781 49 KLFTWFLVQLGELVNGFSNEYWGWG-GEDDDMSNRVKAAGLQIIRYP 94 (155)
Q Consensus 49 gl~t~i~~~~f~~vNGf~n~~~GwG-~EDddl~~Rl~~~g~~i~r~~ 94 (155)
+.++.+.++.+.++. +.+...| .+|.||..|+..+|.++...+
T Consensus 153 ~~~~~~~r~~~~~ig---~~~~~~~~~~~~~l~~~~~~~g~~i~~~p 196 (224)
T cd06442 153 SGFRAYRREVLEKLI---DSLVSKGYKFQLELLVRARRLGYRIVEVP 196 (224)
T ss_pred CccchhhHHHHHHHh---hhccCCCcEEeHHHHHHHHHcCCeEEEeC
Confidence 356678899999986 2222233 347899999999999998854
No 56
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=30.73 E-value=29 Score=24.76 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=27.7
Q ss_pred cCCCCCcccCC--CCChhHHHHHHhcCceEEecCC
Q psy13781 63 NGFSNEYWGWG--GEDDDMSNRVKAAGLQIIRYPP 95 (155)
Q Consensus 63 NGf~n~~~GwG--~EDddl~~Rl~~~g~~i~r~~~ 95 (155)
+|-+--+-||| -|+-+|..++..+|+.+.-|++
T Consensus 73 ~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~~ 107 (110)
T PF00289_consen 73 EGADAIHPGYGFLSENAEFAEACEDAGIIFIGPSP 107 (110)
T ss_dssp TTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-H
T ss_pred hcCcccccccchhHHHHHHHHHHHHCCCEEECcCh
Confidence 58888999999 7999999999999999887754
No 57
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=30.15 E-value=37 Score=25.65 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=32.6
Q ss_pred eeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecC
Q psy13781 50 LFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 94 (155)
Q Consensus 50 l~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~ 94 (155)
++..|.++...++-+. ....+|+ +|.||..|+..+|+++...+
T Consensus 159 g~~~~~r~~~~~~~~~-~~~~~~~-~d~el~~r~~~~g~~~~~vp 201 (211)
T cd04188 159 GFKLFTRDAARRLFPR-LHLERWA-FDVELLVLARRLGYPIEEVP 201 (211)
T ss_pred CceeEcHHHHHHHHhh-hhccceE-eeHHHHHHHHHcCCeEEEcC
Confidence 5667888888887543 2334666 69999999999999888754
No 58
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.52 E-value=59 Score=24.00 Aligned_cols=49 Identities=18% Similarity=0.045 Sum_probs=33.5
Q ss_pred ceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecCCCceeE
Q psy13781 49 KLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKY 100 (155)
Q Consensus 49 gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~~~~~~y 100 (155)
+.-+.+.++.+.++.+|+..+ .| .||.++..++...| ++.-.+.....|
T Consensus 154 ~~~~~~r~~~~~~~~~~~~~~-~~-~~D~~~~~~~~~~~-~~~~~~~~~~~~ 202 (214)
T cd04196 154 GCTMAFNRELLELALPFPDAD-VI-MHDWWLALLASAFG-KVVFLDEPLILY 202 (214)
T ss_pred CceeeEEHHHHHhhccccccc-cc-cchHHHHHHHHHcC-ceEEcchhHHHH
Confidence 455678999999999999884 22 58888888887744 444443333333
No 59
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=23.86 E-value=52 Score=25.68 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=33.6
Q ss_pred cceeEEeeehhcccccCCCCCcccCCCCChhHHHHHHhcCceEEecC
Q psy13781 48 HKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 94 (155)
Q Consensus 48 ~gl~t~i~~~~f~~vNGf~n~~~GwG~EDddl~~Rl~~~g~~i~r~~ 94 (155)
.+++..+.++.+..+.++.+.. ||. +|.||..|+...|+++...+
T Consensus 167 ~g~~~~~rr~~~~~i~~~~~~~-~~~-~~~el~~~~~~~g~~i~~vp 211 (243)
T PLN02726 167 TGSFRLYKRSALEDLVSSVVSK-GYV-FQMEIIVRASRKGYRIEEVP 211 (243)
T ss_pred CCcccceeHHHHHHHHhhccCC-CcE-EehHHHHHHHHcCCcEEEeC
Confidence 4567788999999986544321 333 57899999999999999854
Done!