RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13781
(155 letters)
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
1nkh_B* 1nqi_B* 1nwg_B* ...
Length = 287
Score = 100 bits (250), Expect = 1e-26
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Query: 24 YSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLGELVNGFSNEYWGWGGEDDDMSNRV 83
R+ + + + + + Q +NGF N YWGWGGEDDD+ NR+
Sbjct: 151 CFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRL 210
Query: 84 KAAGLQIIRYPPDIAKYSMLRHRKEKA---NPQRYEKLYSGHKRYKKDGLTSLKYKVIDT 140
G+ I R + +RH ++K NPQR++++ + DGL SL Y+V+D
Sbjct: 211 VFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYQVLDV 270
Query: 141 KQHKLFTWFLVQLG 154
+++ L+T V +G
Sbjct: 271 QRYPLYTQITVDIG 284
Score = 49.1 bits (116), Expect = 7e-08
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 13 NRVLYSRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 59
N R++++ + DGL SL Y+V+D +++ L+T V +G
Sbjct: 238 NEPNPQRFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIG 284
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 94.1 bits (233), Expect = 3e-24
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 60 ELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIR-YPPDIAKYSMLRHRKEKANPQR---- 114
+ +NG SN+YWGWG EDD+ R++ AGLQ+ R H + + +R
Sbjct: 171 KQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQNIKTGTNDTFSHIHNRYHRKRDTQK 230
Query: 115 -YEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLV 151
+ + KR K GL ++KYK++ L V
Sbjct: 231 CFNQKEMTRKRDHKTGLDNVKYKILK-VHEMLIDQVPV 267
Score = 41.7 bits (97), Expect = 3e-05
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 13 NRVLYSRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLV 56
R + + KR K GL ++KYK++ L V
Sbjct: 225 KRDTQKCFNQKEMTRKRDHKTGLDNVKYKILK-VHEMLIDQVPV 267
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.055
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 108 EKANPQRYEKLYSGHKRYKKDGLTSLKYK 136
EK Q +KL + K Y D +L K
Sbjct: 18 EK---QALKKLQASLKLYADDSAPALAIK 43
Score = 25.7 bits (55), Expect = 6.7
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 21 EKLYSGHKRYKKDGLTSLKYK 41
+KL + K Y D +L K
Sbjct: 23 KKLQASLKLYADDSAPALAIK 43
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 30.7 bits (69), Expect = 0.21
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 60 ELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLY 119
F E+ WGGED++ R+ G +A + + K N
Sbjct: 289 FRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVEGAMAYH---QEPPGKENETDRAAGK 345
Query: 120 SGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLV 151
+ + + + K + L LV
Sbjct: 346 NITVQLLQQKVPYFYRKKEKIESATLKRVPLV 377
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 27.8 bits (61), Expect = 1.5
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 64 GFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSGHK 123
+ WGGE+ ++S RV G + P + R + P +++ +
Sbjct: 253 KYDMMMDVWGGENLEISFRVWQCGGSLE-IIPCSRVGHVFRKQHPYTFPGGSGTVFARNT 311
Query: 124 R 124
R
Sbjct: 312 R 312
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 27.6 bits (62), Expect = 1.7
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 59 GELVNGFSNEYWGWGGE-DDDMSNRVKAAGLQIIRYPPDIAKYSMLRH 105
G LV G + + W D V ++ P I + R
Sbjct: 266 GRLVVGATMKPGDWSETPDLGGLESVMKKAKTML---PAIQNMKVDRF 310
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 26.9 bits (59), Expect = 3.2
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 64 GFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANP-QRY 115
G + +D D R G + P A + M K+ A Q Y
Sbjct: 381 GQPLPLFIKW-DDADYGLRAAEHGYPTV-TLPGAAIWHMAWSDKDDAIDWQAY 431
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 27.0 bits (59), Expect = 3.4
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 64 GFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSGHK 123
+ WGGE+ ++S R+ G + + R P ++ + +
Sbjct: 221 TYDAGMDIWGGENLEISFRIWQCGGT-LEIVTCSHVGHVFRKATPYTFPGGTGQIINKNN 279
Query: 124 RY 125
R
Sbjct: 280 RR 281
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5
domain, structural genomics, NPPSFA; HET: AMP; 1.80A
{Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*
Length = 352
Score = 26.4 bits (59), Expect = 4.8
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 81 NRV-KAAGLQIIRYPPDIAKY 100
NR KA+G II+ D+ KY
Sbjct: 329 NRARKASGFSIIKAISDVYKY 349
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione,
dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Length = 190
Score = 25.7 bits (57), Expect = 5.8
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 112 PQRYEKLYSGHKRYKKDGLTSL 133
YE + + +YK G T L
Sbjct: 64 KGGYETATTLYNKYKSQGFTVL 85
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA)
sandwich, glutaredoxin fold, oxidoreductase; 1.41A
{Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Length = 187
Score = 25.7 bits (57), Expect = 5.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 112 PQRYEKLYSGHKRYKKDGLTSL 133
YE + + +YK G T L
Sbjct: 62 KGGYETATTLYNKYKSQGFTVL 83
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase,
lipid peroxidase, schistosoma detoxification pathway;
1.00A {Schistosoma mansoni} PDB: 2wgr_A
Length = 169
Score = 25.2 bits (56), Expect = 7.8
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 112 PQRYEKLYSGHKRYKKDGLTSL 133
+ Y +L H R GL L
Sbjct: 47 DKNYRQLQEMHTRLVGKGLRIL 68
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 26.0 bits (56), Expect = 7.8
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 62 VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYP 94
+ G+ WGGE ++S +V G ++ P
Sbjct: 299 LGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIP 331
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane,
oxidoreductase, transmembrane; 1.80A {Homo sapiens} PDB:
3cyn_A
Length = 180
Score = 25.3 bits (56), Expect = 9.0
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 112 PQRYEKLYSGHKRYKKDGLTSL 133
+ Y L HK + + L
Sbjct: 54 DRNYLGLKELHKEFGPSHFSVL 75
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX,
phospholipid hydroperoxidase, struc genomics, structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 181
Score = 25.3 bits (56), Expect = 9.1
Identities = 4/22 (18%), Positives = 5/22 (22%)
Query: 112 PQRYEKLYSGHKRYKKDGLTSL 133
Q Y L + L
Sbjct: 65 DQHYRALQQLQRDLGPHHFNVL 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.426
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,414,760
Number of extensions: 132464
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 25
Length of query: 155
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,300,587
Effective search space: 296740503
Effective search space used: 296740503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)