RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13781
         (155 letters)



>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 271

 Score =  112 bits (281), Expect = 8e-32
 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 3/98 (3%)

Query: 60  ELVNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRH---RKEKANPQRYE 116
             +NGF N YWG GGEDDD+ NR+   G+ + R    I K  M+RH   +K + NPQR++
Sbjct: 171 LSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRDKKNEPNPQRFD 230

Query: 117 KLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 154
           ++    +    DGL SL Y V++ +++ L+T   V +G
Sbjct: 231 RIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 268



 Score = 49.2 bits (117), Expect = 3e-08
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 13  NRVLYSRYEKLYSGHKRYKKDGLTSLKYKVIDTKQHKLFTWFLVQLG 59
           N     R++++    +    DGL SL Y V++ +++ L+T   V +G
Sbjct: 222 NEPNPQRFDRIAHTKETMLSDGLNSLTYMVLEVQRYPLYTKITVDIG 268


>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 33.8 bits (76), Expect = 0.006
 Identities = 9/73 (12%), Positives = 24/73 (32%)

Query: 62  VNGFSNEYWGWGGEDDDMSNRVKAAGLQIIRYPPDIAKYSMLRHRKEKANPQRYEKLYSG 121
           +  +      WGGE+ ++S R+   G  +         +   +           + +   
Sbjct: 212 IGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKN 271

Query: 122 HKRYKKDGLTSLK 134
           ++R  +  +   K
Sbjct: 272 NRRLAEVWMDEFK 284


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 602,941
Number of extensions: 26474
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 14
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)