Query psy13784
Match_columns 388
No_of_seqs 474 out of 1315
Neff 11.3
Searched_HMMs 29240
Date Fri Aug 16 20:25:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.9E-43 6.4E-48 327.2 29.0 365 1-388 79-480 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.6E-35 5.6E-40 271.0 16.8 332 1-370 86-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 6.4E-31 2.2E-35 239.6 29.3 301 1-361 85-422 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.6E-29 1.2E-33 231.4 16.3 365 1-377 78-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 6.5E-30 2.2E-34 228.2 4.8 305 1-364 59-369 (375)
6 2cfq_A Lactose permease; trans 99.9 1.2E-26 4.1E-31 209.7 7.4 326 1-378 67-407 (417)
7 2xut_A Proton/peptide symporte 99.9 8E-25 2.7E-29 203.9 14.6 371 1-381 78-513 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 4.6E-14 1.6E-18 128.6 13.1 174 189-374 35-210 (451)
9 3o7q_A L-fucose-proton symport 99.5 2.1E-13 7.3E-18 123.7 15.0 140 194-345 38-177 (438)
10 2gfp_A EMRD, multidrug resista 99.5 4.6E-14 1.6E-18 125.4 8.6 166 196-376 14-180 (375)
11 4aps_A DI-OR tripeptide H+ sym 99.5 2.6E-13 8.8E-18 125.1 12.0 157 197-368 28-194 (491)
12 2xut_A Proton/peptide symporte 99.4 3.8E-12 1.3E-16 118.3 16.8 157 198-368 28-196 (524)
13 4gc0_A D-xylose-proton symport 99.1 4.1E-10 1.4E-14 103.7 12.4 130 218-347 56-188 (491)
14 2cfq_A Lactose permease; trans 99.0 4.4E-10 1.5E-14 101.2 6.1 117 1-120 283-404 (417)
15 1cmk_I CAMP-dependent protein 25.2 15 0.00051 17.5 0.0 9 1-9 9-17 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.9e-43 Score=327.23 Aligned_cols=365 Identities=23% Similarity=0.416 Sum_probs=289.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHH------------------hhcchhHHHHHHHHHhhhccccccchhhhhccccccc
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLIT------------------YSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQ 62 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~ 62 (388)
+||+|||++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+...++++| +.
T Consensus 79 aDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E---~~ 155 (491)
T 4gc0_A 79 SNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAE---LA 155 (491)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hC
Confidence 5999999999999999999999998 47899999999999999999999999999999 99
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhHH------------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChh
Q psy13784 63 NTKLRGSLATWATTARAFGLLQVYFMGSLL------------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRG 130 (388)
Q Consensus 63 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~------------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~ 130 (388)
|+++|++..++.+.+..+|.++++.++... +||..+.+..++.++..+..++ +||||+|+..+++.+
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~peSp~~L~~~~~~~ 234 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYT-VPESPRWLMSRGKQE 234 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGG-SCCCHHHHHHTTCHH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhc-CCCChHHHHHcCchh
Confidence 999999999999999999999999888765 6999999888888877766666 999999999999999
Q ss_pred hHHHHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy13784 131 DAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR 210 (388)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (388)
++++.+++.+..+.. .++..+.++..+.+++...+.... ..++.........+.++.+.+.+..|.+.+.+
T Consensus 235 ~a~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (491)
T 4gc0_A 235 QAEGILRKIMGNTLA-------TQAVQEIKHSLDHGRKTGGRLLMF--GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK 305 (491)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTTHHHHS--CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHhcCCchh-------HHHHHHHHHHHHhhhhhhhHHHHh--cccHHHHHHHHHHHHHHhhhhHHHhcchHHHH
Confidence 998888776542111 000111111111111111111111 12234455556666777788889999999998
Q ss_pred HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHH
Q psy13784 211 SSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAA 290 (388)
Q Consensus 211 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (388)
..+.+..+........++...++.++++++.||+|||+.+..+.....++.+.+....... ...+.....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~ 375 (491)
T 4gc0_A 306 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----------APGIVALLS 375 (491)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT----------CCHHHHHHH
T ss_pred hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc----------cchHHHHHH
Confidence 8888777777788888999999999999999999999999988888888777765543322 133445555
Q ss_pred HHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh------cc-cchhhHHHHHHHHH
Q psy13784 291 LVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA------LG-NGIFFFYGLVAAIG 363 (388)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~------~g-~~~~~~~~~~~~~~ 363 (388)
..+...++..+..+..+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+. .+ ...+++++++++++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 455 (491)
T 4gc0_A 376 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 455 (491)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 566666777788888899999999999999999999999999999999988876443 33 55788889999999
Q ss_pred HHHhheeccCCCCCCHHHHHhhhcC
Q psy13784 364 TAHVLAYLPETKGKSLEEIIKGFSS 388 (388)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (388)
.++.++++||||+|++||+|+.||+
T Consensus 456 ~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 456 ALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp HHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred HHHHHheecCCCCCCHHHHHHHhCC
Confidence 9888899999999999999999874
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.6e-35 Score=270.99 Aligned_cols=332 Identities=13% Similarity=0.076 Sum_probs=242.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHh----hcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITY----SLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATT 76 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~ 76 (388)
+||+|||++++++.++.+++.+++++ ++|++.+++.|+++|++.+...+...+++.| ++|+++|++++++...
T Consensus 86 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~---~~~~~~r~~~~~~~~~ 162 (451)
T 1pw4_A 86 SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH---WWSQKERGGIVSVWNC 162 (451)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHT---TCTTTHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHH---HCCchhhhHHHHHHHH
Confidence 59999999999999999999999999 9999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhHH----h-HHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 77 ARAFGLLQVYFMGSLL----R-YRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 77 ~~~~G~~~~~~~~~~~----~-w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
+.++|.++++.+++.+ + ||+.|++.+++.++..++.++++||+|+....+++.+.. + .
T Consensus 163 ~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~--- 225 (451)
T 1pw4_A 163 AHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-------------N-D--- 225 (451)
T ss_dssp HHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-------------C-C---
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-------------c-c---
Confidence 9999999999999875 7 999999999998888777777799988643211111000 0 0
Q ss_pred cccccccccc-ccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHH
Q psy13784 152 SRGDAESGAQ-GEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLI 229 (388)
Q Consensus 152 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~ 229 (388)
...+.++.++ +...++...++.++++..+.. .+..+...........+.|.++++ .|+++.+.+.......++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 300 (451)
T 1pw4_A 226 YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYI-----AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA 300 (451)
T ss_dssp -------------CCTHHHHHHTSSCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHH
T ss_pred ccccchhhhhcccccccchHHHHHcCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 0000000000 000111113445555543322 222222333456677888999886 699888899999999999
Q ss_pred HHHHHHhhheeeccc--CCchHHHHhhHHHH-HHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccch
Q psy13784 230 IFASVISISFILPHT--GVKPLSAASGMGIA-LSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIP 306 (388)
Q Consensus 230 ~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (388)
.+++.++.+++.||+ +||+.+..+..+.. ++.+++.. .. ..+.+....... ..+.......+..
T Consensus 301 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~~~~-~~g~~~~~~~~~~ 367 (451)
T 1pw4_A 301 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM---NP---------AGNPTVDMICMI-VIGFLIYGPVMLI 367 (451)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS---CC---------TTCHHHHHHHHH-HHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH---hc---------ccCHHHHHHHHH-HHHHHHhchHHHH
Confidence 999999999999999 99988777665555 44443322 11 012233333333 3333333344566
Q ss_pred hhhhccCCchhhHHHHHHHHHHHHHH-HHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhhee
Q psy13784 307 YLMLGEIFPMEVKGVAAGLATCLAYI-FGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAY 370 (388)
Q Consensus 307 ~~~~~~~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 370 (388)
+.+..|.+|++.|+++.|+.+...++ |..++|.+.|.+.+..| ...+++.+++.+++.++....
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999 99999999999999988 667777777777766655443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=6.4e-31 Score=239.65 Aligned_cols=301 Identities=14% Similarity=0.056 Sum_probs=227.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHH---HhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLI---TYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTA 77 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~ 77 (388)
+||+|||++++.+.++.+++.+++ .++++++.+++.|+++|++.+...+...+++.| ++|+++|++++++.+.+
T Consensus 85 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~ 161 (438)
T 3o7q_A 85 MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV---LGPESSGHFRLNLAQTF 161 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSCSTTHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHH---HcCchhHHHHHHHHHHH
Confidence 599999999999999999999999 889999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhHH-----h-------------------------HHHHHHHhHHHHHHHHHHHHh-ccCCCchHHhhc
Q psy13784 78 RAFGLLQVYFMGSLL-----R-------------------------YRKVAAMAAIFSALGTILITF-IIPESPAWLNSK 126 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~-----~-------------------------w~~~f~~~~~~~~~~~~~~~~-~~pesp~~~~~~ 126 (388)
.++|..+++.+++.+ + ||+.|++.+++.++..++.++ ..||+++..
T Consensus 162 ~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--- 238 (438)
T 3o7q_A 162 NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN--- 238 (438)
T ss_dssp HHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---
Confidence 999999999998887 2 999998888777766655544 234443200
Q ss_pred CChhhHHHHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy13784 127 GRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMT 206 (388)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (388)
+.+++++..+.++++.+++|..+...+.... ..........+.|
T Consensus 239 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 282 (438)
T 3o7q_A 239 -------------------------------HSDAKQGSFSASLSRLARIRHWRWAVLAQFC-----YVGAQTACWSYLI 282 (438)
T ss_dssp -------------------------------CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred -------------------------------cccccccchhhhHHHHHhChHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 0000111233456677777765543322222 2223456677888
Q ss_pred HH-HHHc-CCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccc
Q psy13784 207 DF-VRSS-GFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFN 284 (388)
Q Consensus 207 ~~-~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (388)
.+ +++. |++..+.+.......++.+++.++.+++.||++||+.+..+..+..++.+++.. ...
T Consensus 283 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 347 (438)
T 3o7q_A 283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---------------AGG 347 (438)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------CCH
T ss_pred HHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---------------cCC
Confidence 88 7765 998899999999999999999999999999999999998888877777666544 111
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHH
Q psy13784 285 LIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAA 361 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~ 361 (388)
........+.. .+.....+..+.+..|.+|++ ++.+.++.. ...+++.++|.+.|.+.|..| ....+....++.
T Consensus 348 ~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 422 (438)
T 3o7q_A 348 HVGLIALTLCS-AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_dssp HHHHHHHHHHH-HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 22222333333 333445577778889999977 888888877 778999999999999999988 444333333333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=3.6e-29 Score=231.44 Aligned_cols=365 Identities=10% Similarity=0.046 Sum_probs=221.4
Q ss_pred CCC-CCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchh--hhHHHHHHHHH
Q psy13784 1 MDK-LGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKL--RGSLATWATTA 77 (388)
Q Consensus 1 sDr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~--r~~~~~~~~~~ 77 (388)
+|| +|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+...+++.| ++|+++ |+++.++.+.+
T Consensus 78 ~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~~~r~~~~~~~~~~ 154 (491)
T 4aps_A 78 ADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGT---LYDEHDRRRDAGFSIFVFG 154 (491)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH---HSSSCTTHHHHHHHHHHHH
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHH---HcCcccccceeeehHHHHH
Confidence 599 899999999999999999999999999999999999999999999999999999 999988 77888889999
Q ss_pred HHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchH----HhhcCChhhHHHHHHHh----------
Q psy13784 78 RAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAW----LNSKGRRGDAEWAAKRL---------- 139 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~----~~~~~~~~~~~~~~~~~---------- 139 (388)
.++|..++|.+++.+ +||+.|++.++..++..+..++..|+..+. ..++.+.++.++..++.
T Consensus 155 ~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 234 (491)
T 4aps_A 155 INLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAI 234 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999887 899999998887776666555432321110 00011112222211110
Q ss_pred ----cCCCCCCCCCCCccccccccc-c----ccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy13784 140 ----RLGPPSNQTEPTSRGDAESGA-Q----GEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR 210 (388)
Q Consensus 140 ----~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (388)
...+..+.++........... . ....+.....+..+++... ... ........+..+.....+.+.+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 311 (491)
T 4aps_A 235 IVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVS--YIP-LFIAAVLFWAIEEQGSVVLATFAA 311 (491)
T ss_dssp HHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTT--HHH-HHHHHHHHHHHHGGGGTHHHHHHH
T ss_pred HHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHH--HHH-HHHHHHHHHHHHhhccHHHHHHHH
Confidence 000000000000000000000 0 0000000000000111111 111 111111111222334455666665
Q ss_pred H-cCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHH-----HhhHHHHHHHHHHHHHhhcccCccccccccccc
Q psy13784 211 S-SGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSA-----ASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFN 284 (388)
Q Consensus 211 ~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (388)
+ .+.+..+.+.......+...++..+.+++.||++||+... .+..+..++.+.+......... ....+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 386 (491)
T 4aps_A 312 ERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT-----SGKVSP 386 (491)
T ss_dssp HSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC-----CTTCCT
T ss_pred HHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCccH
Confidence 4 4665567778888888999999999999999999986654 5555555555544332211110 001122
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhHHHHHHHHHH
Q psy13784 285 LIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVAAIGT 364 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 364 (388)
+..... .+..+.......+..+.+..|.+|++.|+++.|+.+...++|..++|.+.+.+.+......+...+++++++.
T Consensus 387 ~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (491)
T 4aps_A 387 LWLVGS-WALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLG 465 (491)
T ss_dssp HHHHHH-HHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 333333 3333333444457778999999999999999999999999999999999998765433677777888777777
Q ss_pred HHhheeccCCCCC
Q psy13784 365 AHVLAYLPETKGK 377 (388)
Q Consensus 365 ~~~~~~~~~~~~~ 377 (388)
++.+...++.+++
T Consensus 466 ~~~~~~~~~~~~~ 478 (491)
T 4aps_A 466 IVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHC-------
T ss_pred HHHHHHHHHHHHH
Confidence 7666666655543
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=6.5e-30 Score=228.16 Aligned_cols=305 Identities=14% Similarity=0.087 Sum_probs=220.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+.+++.++..++++++.+++.|+++|++.+...+...+++.| +.|+++|++++++.+.+..+
T Consensus 59 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 135 (375)
T 2gfp_A 59 SDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRD---LYERTQLRHANSLLNMGILV 135 (375)
T ss_dssp HTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTSSCCSHHHHHHHHHHH
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HCCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..++|.+++.+ +||+.|++.++..++..+...+++||+|+... +
T Consensus 136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------------------- 184 (375)
T 2gfp_A 136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA---P---------------------------- 184 (375)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC---C----------------------------
T ss_pred HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc---c----------------------------
Confidence 999999999887 99999999999888877756666888764200 0
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
+++.++++++.+++|..+...+ ..+...........+.|.++++ .|+++.+.+.......++.+++.+
T Consensus 185 ------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 253 (375)
T 2gfp_A 185 ------RTRLLTSYKTLFGNSGFNCYLL-----MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAW 253 (375)
T ss_dssp ------CCCTTTCSTHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ------cccHHHHHHHHhcCcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0011123345555554333222 2222333345666777777765 688788889999999999999999
Q ss_pred hhheeecccCCchHHHHhhHH-HHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC
Q psy13784 236 SISFILPHTGVKPLSAASGMG-IALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF 314 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (388)
+.+++.||.+++. ..+... ...+...+.... .. ..+.+.......+...+.+ ...+....+..|..
T Consensus 254 ~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~ 320 (375)
T 2gfp_A 254 FAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDW-FG---------VMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPF 320 (375)
T ss_dssp HHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHH-HH---------HHHHHHHHHHHHHHHHHHH-HTSSTTHHHHHTHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh-hc---------cccHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhC
Confidence 9999999988722 222222 222221111100 00 0122333333333333333 34577778999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhHHHHHHHHHH
Q psy13784 315 PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVAAIGT 364 (388)
Q Consensus 315 p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 364 (388)
| ++|+++.|+.+...++|..++|.+.|.+.+..+....+....+.+++.
T Consensus 321 p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 369 (375)
T 2gfp_A 321 P-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIV 369 (375)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 8 789999999999999999999999999887666444444444444433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.93 E-value=1.2e-26 Score=209.73 Aligned_cols=326 Identities=13% Similarity=0.114 Sum_probs=197.8
Q ss_pred CCCCCchhHHHHHHHHHHHHH---HHHHhhcch-hHHHHHHHHHhhhccccccchhhhhcccccccCc--hhhhHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGW---LLITYSLTI-TNLFIGRFLTGVSEGLSASPATIYIAESIMVQNT--KLRGSLATWA 74 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~--~~r~~~~~~~ 74 (388)
+||+|||++++.+..+.++.. ....+++.. ..+...+.+.|++.+...+.....+.+ +.++ ++|+...+..
T Consensus 67 sDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~g~~ 143 (417)
T 2cfq_A 67 SDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEA---FIEKVSRRSNFEFGRA 143 (417)
T ss_dssp HTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHH---HHHHHHHHHTCCHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHhhhhcccchHHH
Confidence 599999999999888776532 212233221 123456677676665555444445555 4433 4556677777
Q ss_pred HHHHHHHHHHHHHHHhHH---hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 75 TTARAFGLLQVYFMGSLL---RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 75 ~~~~~~G~~~~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
..+..+|..++|.+++.+ +||..|++.++..++..+..++..||+|+. .+.++
T Consensus 144 ~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------------------- 199 (417)
T 2cfq_A 144 RMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSS----ATVAN-------------------- 199 (417)
T ss_dssp SSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS----SCSSS--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCcccccc----ccccc--------------------
Confidence 777888999999888877 799999988777655544444423343210 00000
Q ss_pred ccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-C---CCCCcHHHHHHHHH
Q psy13784 152 SRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSS-G---FHLLNPYFITVIGG 227 (388)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g---~s~~~~~~~~~~~~ 227 (388)
.. + +++++.+.++.++.++++..+...+..+... ..+.....+.|.++++. + .+....+.......
T Consensus 200 ~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 269 (417)
T 2cfq_A 200 AV-G----ANHSAFSLKLALELFRQPKLWFLSLYVIGVS-----CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGE 269 (417)
T ss_dssp SS-S----SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHH
T ss_pred cc-c----cccccccHHHHHHHhcCCchhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Confidence 00 0 0000111234456677665543322211111 11233334466665542 2 11233456666777
Q ss_pred HHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchh
Q psy13784 228 LIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPY 307 (388)
Q Consensus 228 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (388)
++..++.++.++++||+|||+.+..+..+.+++.+.+.. ..+.+.......+..... ....+..+
T Consensus 270 ~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~-~~~~~~~~ 334 (417)
T 2cfq_A 270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--------------ATSALEVVILKTLHMFEV-PFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--------------CCSHHHHHHHTTHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--------------hccHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 888899999999999999999888777666665544422 012222222222222222 22223446
Q ss_pred hhhccCCchhhHHHHHHHH-HHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCCCCC
Q psy13784 308 LMLGEIFPMEVKGVAAGLA-TCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETKGKS 378 (388)
Q Consensus 308 ~~~~~~~p~~~r~~~~~~~-~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (388)
.+.+|.+|++.|+++.++. +...++|+.++|.+.|.+.+..| ...+...+++.+++.++.+...||+++.+
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 8999999999999999994 78888999999999999999888 66777778777777776666667665544
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.92 E-value=8e-25 Score=203.94 Aligned_cols=371 Identities=11% Similarity=0.058 Sum_probs=194.1
Q ss_pred CCCC-CchhHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHH---HH
Q psy13784 1 MDKL-GRKPAIILIGIVGIIGWLLITYSL-TITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATW---AT 75 (388)
Q Consensus 1 sDr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~---~~ 75 (388)
+||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+...+++.| ++|+++|+++.+. ..
T Consensus 78 ~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~ 154 (524)
T 2xut_A 78 ADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGD---QFDQSNKSLAQKAFDMFY 154 (524)
T ss_dssp HTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHH---TCSTTTTTHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHH---HcCccchHHHHHHHHHHH
Confidence 5999 999999999999999999999999 99999999999999999999999999999 9999999877666 88
Q ss_pred HHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 76 TARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
.+.++|..++|.+++.+ +||+.|++.++..++..+..++..|+.++...++++..+..+......+....+.+...
T Consensus 155 ~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (524)
T 2xut_A 155 FTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIG 234 (524)
T ss_dssp HHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccc
Confidence 99999999999998877 89999999988877665555442232211000000000000000000000000000000
Q ss_pred cc-------------cccccc-----------ccccccccchhhh-----------hccCccchHHHHHHHHHHHHHHhh
Q psy13784 152 SR-------------GDAESG-----------AQGEQMSTTNIFK-----------EFMKPEAYKPLIIISLFFLFQQFS 196 (388)
Q Consensus 152 ~~-------------~~~~~~-----------~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 196 (388)
.. .+.++. ...++..+.++.+ ..++++.............. .+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 313 (524)
T 2xut_A 235 LVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTP-FWS 313 (524)
T ss_dssp HHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHH-HHT
T ss_pred hhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 00 000000 0000000001100 00111111111111111111 111
Q ss_pred hHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHHHhhheee----cccCCc----hHHHHhhHHHHHHHHHHHHH
Q psy13784 197 AVNVILAYMTDFVRSSGFHL-LNPYFITVIGGLIIFASVISISFIL----PHTGVK----PLSAASGMGIALSMLVIGTY 267 (388)
Q Consensus 197 ~~~~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~----d~~g~~----~~~~~~~~~~~~~~~~~~~~ 267 (388)
.+.....+.+.+..+.+.+. ...+.......++.+++..+.+++. ||.++| +.+..+..+.+++.+.+...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 393 (524)
T 2xut_A 314 LFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTI 393 (524)
T ss_dssp TTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTT
T ss_pred HHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 01111112222222333221 2455555555566666666666654 444332 34445555555554443221
Q ss_pred hhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy13784 268 LLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 347 (388)
...... ....+.+.......+. +.......+..+.+..|..|++.|++++|+.++..++|+.++|.+.+.+.+.
T Consensus 394 ~~~~~~-----~~~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 394 QLMMDG-----GSALSIFWQILPYALL-TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp TTTTTT-----TCCCCSHHHHHHHHHH-HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcC-----CCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 000000 0011223333333333 3333334567778999999999999999999999999999999999988763
Q ss_pred c----------c--cchhhHHHHHHHHHHHHhheeccCCCCCCHHH
Q psy13784 348 L----------G--NGIFFFYGLVAAIGTAHVLAYLPETKGKSLEE 381 (388)
Q Consensus 348 ~----------g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (388)
. + ...+++.+++++++.++.+...++.++++.++
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 468 TVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR 513 (524)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 2 2 12266667777777666656666655544433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.54 E-value=4.6e-14 Score=128.63 Aligned_cols=174 Identities=11% Similarity=-0.037 Sum_probs=129.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHh
Q psy13784 189 FFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYL 268 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 268 (388)
...+........+....|.+.++. .+..+.++......++..++.++.|+++||+|||+.+..+..+..++.++..+..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 113 (451)
T 1pw4_A 35 FGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP 113 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333445667778888888 9999999999999999999999999999999999999999988888887775511
Q ss_pred hcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy13784 269 LFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL 348 (388)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 348 (388)
.. . .+.+..++... ..+.......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..
T Consensus 114 ~~-~---------~~~~~l~~~~~-l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 114 WA-T---------SSIAVMFVLLF-LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HH-H---------SSSSHHHHHHH-HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred hc-c---------ccHHHHHHHHH-HHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 0 12233333333 3333333445777799999999999999999999999999999999999988877
Q ss_pred c--cchhhHHHHHHHHHHHHhheeccCC
Q psy13784 349 G--NGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 349 g--~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
+ ...+++.+++.++..++.++..||+
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 6 4456666666666666555566654
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.51 E-value=2.1e-13 Score=123.73 Aligned_cols=140 Identities=11% Similarity=-0.066 Sum_probs=111.4
Q ss_pred HhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccC
Q psy13784 194 QFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKA 273 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (388)
............|.+.++.|.+..+.++......++..++.++.|+++||+|||+.+..+..+..++.++......
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---- 113 (438)
T 3o7q_A 38 WAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---- 113 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc----
Confidence 3333456677788888889999999999999999999999999999999999999999999998888887732111
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy13784 274 PIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLH 345 (388)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~ 345 (388)
..+.+.. ....+..+.......+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+.
T Consensus 114 -------~~~~~~l-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 114 -------IMNYTLF-LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp -------TTCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred -------cccHHHH-HHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333 333334444444455677799999999999999999999999999999999999988
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.49 E-value=4.6e-14 Score=125.44 Aligned_cols=166 Identities=14% Similarity=0.003 Sum_probs=129.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcc
Q psy13784 196 SAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPI 275 (388)
Q Consensus 196 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (388)
..........|.+.++.|.++.+.+.......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------- 85 (375)
T 2gfp_A 14 MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--------
Confidence 334556666777778889999999999999999999999999999999999999999998888888877651
Q ss_pred ccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhh
Q psy13784 276 VNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFF 354 (388)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~ 354 (388)
++.+. .....+..+.......+....+..|.+|+++|++++++.+....+|..++|.+.+.+.+..+ ...+.
T Consensus 86 ------~~~~~-l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 158 (375)
T 2gfp_A 86 ------SSLTV-LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYL 158 (375)
T ss_dssp ------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred ------ccHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHH
Confidence 12233 33333334444444557777899999999999999999999999999999999999888778 66677
Q ss_pred HHHHHHHHHHHHhheeccCCCC
Q psy13784 355 FYGLVAAIGTAHVLAYLPETKG 376 (388)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~ 376 (388)
+.++..++..+......||+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHHHCcccCC
Confidence 7777776666655566676543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.47 E-value=2.6e-13 Score=125.12 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHHHHH------cCCCCCcHHHHHHHHHHHHHHHHHhhheeecc-cCCchHHHHhhHHHHHHHHHHHHHhh
Q psy13784 197 AVNVILAYMTDFVRS------SGFHLLNPYFITVIGGLIIFASVISISFILPH-TGVKPLSAASGMGIALSMLVIGTYLL 269 (388)
Q Consensus 197 ~~~~~~~~~~~~~~~------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 269 (388)
.++....+.+.++++ .|.+..+.+.......++..++.++.|+++|| +|||+.+..+..+..++.+++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--- 104 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL--- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---
Confidence 345566666666654 79999999999999999999999999999999 89999999999888888877754
Q ss_pred cccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhh--HHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy13784 270 FEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEV--KGVAAGLATCLAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 347 (388)
.++.+...+...+.+ .......+...+++.|.+|+++ |+.+.++.+...++|..++|.+.+.+.+.
T Consensus 105 -----------~~~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 105 -----------PFGASALFGSIILII-IGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp -----------CCSTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------hhhHHHHHHHHHHHH-HHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112333333333333 3333345777799999999988 88889989999999999999999999998
Q ss_pred cc-cchhhHHHHHHHHHHHHhh
Q psy13784 348 LG-NGIFFFYGLVAAIGTAHVL 368 (388)
Q Consensus 348 ~g-~~~~~~~~~~~~~~~~~~~ 368 (388)
.| ...+++.++..+++.+...
T Consensus 173 ~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 173 AGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 88 6667666665555554443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.42 E-value=3.8e-12 Score=118.29 Aligned_cols=157 Identities=13% Similarity=0.053 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHH-HcC------CCCCcHHHHHHHHHHHHHHHHHhhheeeccc-CCchHHHHhhHHHHHHHHHHHHHhh
Q psy13784 198 VNVILAYMTDFVR-SSG------FHLLNPYFITVIGGLIIFASVISISFILPHT-GVKPLSAASGMGIALSMLVIGTYLL 269 (388)
Q Consensus 198 ~~~~~~~~~~~~~-~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 269 (388)
++....+.+.+++ +.| +++.+.+.......++..++.++.|+++||+ |||+.+..+..+..++.+++.+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-- 105 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence 4556666776665 568 9999999999999999999999999999999 99999999888888887777551
Q ss_pred cccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHH---HHHHHHHHHHHHHHHhHHHHh
Q psy13784 270 FEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGL---ATCLAYIFGFFAVKTWPTLHL 346 (388)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~---~~~~~~~g~~~~~~~~g~l~~ 346 (388)
..+...+....+..+.......+...+++.|.+|+++|+++.+. .+...++|..++|.+.+.+.+
T Consensus 106 ------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 173 (524)
T 2xut_A 106 ------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK 173 (524)
T ss_dssp ------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred ------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 10222233333334444444557777999999999999766555 889999999999999999988
Q ss_pred hcc-cchhhHHHHHHHHHHHHhh
Q psy13784 347 ALG-NGIFFFYGLVAAIGTAHVL 368 (388)
Q Consensus 347 ~~g-~~~~~~~~~~~~~~~~~~~ 368 (388)
..+ ...+.+.+++.+++.+...
T Consensus 174 ~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 174 NFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHH
Confidence 888 6667766666655555443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.12 E-value=4.1e-10 Score=103.65 Aligned_cols=130 Identities=5% Similarity=-0.190 Sum_probs=92.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccc---cccccccchHHHHHHHHH
Q psy13784 218 NPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIV---NFEWGFFNLIPLAALVLN 294 (388)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 294 (388)
..++..+...++.++|+++.|+++||+|||+.+..+.++..++.++.++.......... .......+...+...-+.
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence 34566777788999999999999999999999999999988888877642110000000 000012334444555555
Q ss_pred HHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy13784 295 LVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 347 (388)
.+....+..+....++.|..|++.|+...++.+.....|..+++.+.......
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 55555555677789999999999999999999999999988888877665543
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.98 E-value=4.4e-10 Score=101.16 Aligned_cols=117 Identities=9% Similarity=0.155 Sum_probs=98.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHH-HHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATW-ATTARA 79 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~-~~~~~~ 79 (388)
+||+|||+++..+..+.+++.+..++.++.+.+++..++.+++.+...+....++.| .+|++.|+++.+. .+....
T Consensus 283 ~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~p~~~~g~~~g~~~~~~~~ 359 (417)
T 2cfq_A 283 INRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS---QFEVRFSATIYLVCFCFFKQ 359 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHH---HSCHHHHHHHHHHHHTTTHH
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHh
Confidence 499999999999998888888888888888888888888888877766777889999 9999999999998 477888
Q ss_pred HHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCc
Q psy13784 80 FGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESP 120 (388)
Q Consensus 80 ~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp 120 (388)
+|..++|.+++.+ +++..|.+.+++.++..++.++..||.+
T Consensus 360 lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999998877 7889999988888887777666577654
No 15
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=25.23 E-value=15 Score=17.49 Aligned_cols=9 Identities=33% Similarity=0.579 Sum_probs=6.0
Q ss_pred CCCCCchhH
Q psy13784 1 MDKLGRKPA 9 (388)
Q Consensus 1 sDr~Grr~~ 9 (388)
+||-|||..
T Consensus 9 ~~RtGRRNA 17 (26)
T 1cmk_I 9 SGRTGRRNA 17 (26)
T ss_pred cCccccccc
Confidence 467777764
Done!