RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13784
(388 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 139 bits (353), Expect = 3e-37
Identities = 93/391 (23%), Positives = 182/391 (46%), Gaps = 24/391 (6%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYS--LTITNLFIGRFLTGVSEGLSASPATIYIAES 58
D+ GRK ++++ ++ +IG LL ++ + L +GR + G+ G + +YI+E
Sbjct: 70 GDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISE- 128
Query: 59 IMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL-------RYRKVAAMAAIFSALGTIL 111
+ KLRG+L + FG+L +G L +R + + + L I
Sbjct: 129 --IAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIG 186
Query: 112 ITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIF 171
+ F+ PESP WL KG+ +A +LR +Q + + +S + + +
Sbjct: 187 LLFL-PESPRWLVLKGKLEEARAVLAKLRGVSDVDQEI---QEEKDSLERSVEAEKASWL 242
Query: 172 KEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIF 231
+ F + L++ + +FQQ + +N I Y + G + +T+I G++ F
Sbjct: 243 ELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGL--SDSLLVTIIVGVVNF 300
Query: 232 ASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAAL 291
F++ G +PL G+A+ LV+G LL ++ + +
Sbjct: 301 VFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGA------GIVAIVFI 354
Query: 292 VLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNG 351
+L + ++G+ P+P++++ E+FP+ V+ A +AT ++ F +P + A+G
Sbjct: 355 LLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGY 414
Query: 352 IFFFYGLVAAIGTAHVLAYLPETKGKSLEEI 382
+F + + + V ++PETKG++LEEI
Sbjct: 415 VFLVFAGLLVLFILFVFFFVPETKGRTLEEI 445
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 124 bits (314), Expect = 1e-31
Identities = 100/397 (25%), Positives = 189/397 (47%), Gaps = 25/397 (6%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITN---LFIGRFLTGVSEGLSASPATIYIAE 57
D+ GRK ++++I ++ +IG +L+ + + L +GR L G+ G++++ +Y++E
Sbjct: 95 SDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSE 154
Query: 58 SIMVQNTKLRGSLATWATTARAFGLLQVYFMGSL-------LRYRKVAAMAAIFSALGTI 110
+ LRG+L + A FG+L Y GS L +R + I + L +
Sbjct: 155 ---IAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL 211
Query: 111 LITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTE----PTSRGDAESGAQGEQMS 166
+ F+ PESP WL KGR +A + RLR ++ + Q S
Sbjct: 212 GLFFL-PESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPS 270
Query: 167 TTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIG 226
++F + L + + FQQF+ +N I+ Y ++G + + +++I
Sbjct: 271 WGSLFS--STRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIV 328
Query: 227 GLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLI 286
G + FA F++ G +PL G+A+ + V+G A V +
Sbjct: 329 GAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILG----ASFVTGSSKSSGNV 384
Query: 287 PLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL 346
+ ++L + ++G+ P+P++++ EIFP+ ++ +A ++ F +PT+
Sbjct: 385 AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444
Query: 347 ALGNG-IFFFYGLVAAIGTAHVLAYLPETKGKSLEEI 382
++G G +F F+G + +G V +LPETKG++LEEI
Sbjct: 445 SIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 105 bits (263), Expect = 7e-25
Identities = 90/414 (21%), Positives = 180/414 (43%), Gaps = 60/414 (14%)
Query: 3 KLGRKPAIILIGIVGIIG--------WLLITYSLTITNLFIG----RFLTGVSEGLSASP 50
+ GR+ ++ + ++ I + + T R + G+ GL++
Sbjct: 81 RFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASML 140
Query: 51 ATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLLR------------YRKVA 98
+ +YIAE + +RG L ++ A FG L VYF+ + +R +
Sbjct: 141 SPMYIAE---IAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMF 197
Query: 99 AMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAES 158
A AI + L +L+ + +PE+P +L S+G++ AE +++ +G + +
Sbjct: 198 ASEAIPALLFLMLL-YFVPETPRYLMSRGKQEQAEGILRKI-MGNTLATQALQ---EIKH 252
Query: 159 GAQGEQMSTTNIFKEFMKPEAYKPLIIIS--LFFLFQQFSAVNVILAYMTDFVRSSGFHL 216
+ + + + +I+ + +FQQF +NV+L Y + ++ G
Sbjct: 253 SLDHGRKTGGKLL-------MFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAST 305
Query: 217 LNPYFITVIGGLI-IFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPI 275
T+I G+I + +V++I + G KPL +G+A+ M +GT
Sbjct: 306 DIALLQTIIVGVINLTFTVLAI-MTVDKFGRKPLQIIGALGMAIGMFSLGT--------- 355
Query: 276 VNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGF 335
F ++ L +++ + A ++ + P+ +++L EIFP ++G A +A +I +
Sbjct: 356 -AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANY 414
Query: 336 FAVKTWPTLHLALGNGIFF-------FYGLVAAIGTAHVLAYLPETKGKSLEEI 382
F T+P + F YG + + + ++PETKGK+LEE+
Sbjct: 415 FVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM 468
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 58.5 bits (142), Expect = 3e-09
Identities = 76/391 (19%), Positives = 140/391 (35%), Gaps = 49/391 (12%)
Query: 2 DKLGRKPAIIL-IGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
D+ GRK ++L + + G L +S T + R L G+ G A + E +
Sbjct: 152 DRFGRKKVLLLSTLVTAVSGVLTA-FSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFL- 209
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
K R + T + GL+ + + + + +A L+++ +PESP
Sbjct: 210 --PKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESP 267
Query: 121 AWLNSKGRRGDAEWAAKRL----RLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMK 176
WL S+GR +A +R+ P+ + D + F
Sbjct: 268 RWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDL-----SSSKKQYSFLDLFRT 322
Query: 177 PEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVIS 236
P L +L + F+ +Y + N Y I GL+ + +
Sbjct: 323 PN----LRKTTLCLMMLWFT---TAFSYYGLVLDLGNLG-GNIYLDLFISGLVELPAKLI 374
Query: 237 ISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLV 296
++ G + AAS + +++L++ + + AL +
Sbjct: 375 TLLLIDRLGRRYTMAASLLLAGVALLLL--LFVPVDLYFLR-----------TALAVLGK 421
Query: 297 ASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYI------FGFFAVKTWPTLHLALGN 350
+ YL E++P V+ + G+ + +A + F + + W L L L
Sbjct: 422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVL-- 479
Query: 351 GIFFFYGLVAAIGTAHVLAYLPETKGKSLEE 381
+G +A + L +LPETKG L E
Sbjct: 480 -----FGGLALLAGILTL-FLPETKGVPLPE 504
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 37.2 bits (87), Expect = 0.004
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Query: 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMV 61
D+ GRKP +++ + ++ + S IT L I RFL G + IA+
Sbjct: 23 DRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82
Query: 62 QNTKLRGSLATWATT-ARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPES 119
+ + L + G + L +R AI + IL+ F++PE+
Sbjct: 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 38.1 bits (89), Expect = 0.006
Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 11/155 (7%)
Query: 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMV 61
D++GR+ ++ ++ + LL + +T L I RFL G+ G ++E
Sbjct: 77 DRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYA-- 134
Query: 62 QNTKLRGSLATWATTARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIP 117
+ RG+ G F+ L +R + + I L +L+ +P
Sbjct: 135 -PKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLP 193
Query: 118 ESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTS 152
ES +L SK + + P Q E S
Sbjct: 194 ESIDFLVSKRPET----VRRIVNAIAPQMQAEAQS 224
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 37.7 bits (88), Expect = 0.007
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMV 61
D+ GR+ ++L ++ +G LL+ ++ ++ L +GRFL G+ G A IAE
Sbjct: 59 DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWF-- 116
Query: 62 QNTKLRGSLATWATTARAFGLLQVYFMGSLLR----YRKVAAMAAIFSALGTILITFIIP 117
K RG + G L +G LL +R + + AI L +L+ F++
Sbjct: 117 -PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR 175
Score = 34.6 bits (80), Expect = 0.070
Identities = 30/185 (16%), Positives = 57/185 (30%), Gaps = 16/185 (8%)
Query: 182 PLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLIIFASVISISFI 240
L+++ F +L Y+ +++ G + + GL + +
Sbjct: 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLL 234
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSV 300
G + L G+ +A L++ +L L +L L
Sbjct: 235 SDRLGRRRLLLLIGLLLAALGLLLLAL--------------APSLALLLVALLLLGFGLG 280
Query: 301 GFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLV 359
P + E+ P E +G A+GL + G L G G+F +
Sbjct: 281 FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL 340
Query: 360 AAIGT 364
A +
Sbjct: 341 ALLAA 345
Score = 29.6 bits (67), Expect = 2.5
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 1 MDKLGRKPAIILIG-IVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESI 59
D+LGR+ ++LIG ++ +G LL+ + ++ L + L G G + +E
Sbjct: 235 SDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA 294
Query: 60 MVQNTKLRGSLA-TWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFII 116
+ L T+ + A G L + Y V + A + L +L+ +
Sbjct: 295 PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 35.5 bits (82), Expect = 0.042
Identities = 54/338 (15%), Positives = 111/338 (32%), Gaps = 49/338 (14%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
D+ GR+ +++ ++ +G LL+ ++ ++ L + R L G+ G A IA+
Sbjct: 56 SDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFP 115
Query: 61 VQNTKLRGSLATWATT-ARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPES 119
+ L + A G L + SL +R + AI + L +L ++P
Sbjct: 116 PEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRP 175
Query: 120 PAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEA 179
P A+ +K ++
Sbjct: 176 PP-------------------------------ESKRPKPAEEAPAPLVPAWKLLLRD-- 202
Query: 180 YKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISF 239
L ++ LF A +L Y+ + G L + + GL+ + +
Sbjct: 203 -PVLWLLLALLLF--GFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGR 259
Query: 240 ILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASS 299
+ G + + + + L+ L + L E + + +L L +
Sbjct: 260 LSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL------------LVALLLLGFGA 307
Query: 300 VGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFA 337
P ++ ++ P E +G A+GL + G
Sbjct: 308 GLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 33.9 bits (77), Expect = 0.16
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Query: 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMV 61
D+ GR+P +I I+G++G ++ + L L GV+ G A + ++I E +M
Sbjct: 103 DRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLAAMTLLGVAAG-PAGASPLFIGE-LMS 160
Query: 62 QNTKLRGSLATWATTARAFGLLQVYFMGSLL---RYRKVAAMAAIFSALG-TILITFIIP 117
TK G L A T A YF L +R + + I SA+ ++I + P
Sbjct: 161 NKTKFLGLLIVSAPTI-AMNGAGPYFGQRLAIQGNWRWIFYIYIIMSAIAVLLIIIWYHP 219
Query: 118 ESPAWLNSKGRRGDAEWA 135
S A L+ K R E A
Sbjct: 220 PSFAQLHGKKARKRDELA 237
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 31.4 bits (71), Expect = 0.84
Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 8/148 (5%)
Query: 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMV 61
D+ GR+ ++ ++ G L ++ +FI R + G+ G + Y+ ES
Sbjct: 72 DRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPK 131
Query: 62 QNTKLRGSLATWATTARAFGLL---QVY--FMGSLLRYRKVAAMAAIFSALGTILITFII 116
LR + + A G + QVY + + +I + + + I
Sbjct: 132 ---HLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNI 188
Query: 117 PESPAWLNSKGRRGDAEWAAKRLRLGPP 144
PE+ W + L G
Sbjct: 189 PEAEDWKEKHAGKALVRTMVDILYGGEH 216
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 30.7 bits (69), Expect = 1.6
Identities = 80/362 (22%), Positives = 129/362 (35%), Gaps = 56/362 (15%)
Query: 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMV 61
DK GRKP ++ + +G L + + L + RF+ G+ + A+ Y ES
Sbjct: 78 DKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVES-WP 136
Query: 62 QNTKLRGSLATWATTARAFG---LLQVYFMGSLLRYRKVAAMAAIFSALGTILITFII-- 116
++ K + S A FG ++ YFM S AA F L +L+ I
Sbjct: 137 KHLKSKAS----AFLVSGFGIGNIIAAYFMPSFAE--AYGWRAAFFVGLLPVLLVIYIRA 190
Query: 117 --PESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEF 174
PES W +K G + + + ++ F
Sbjct: 191 RAPESKEWEEAK-------------------------LSGKGKHSQSAWSVFSLSMKGLF 225
Query: 175 MKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASV 234
+ + PL + LF F A I + ++ GF +
Sbjct: 226 NRAQF--PLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGN 283
Query: 235 ISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLN 294
I G+K +G+ +S L I P+ F N + L A +
Sbjct: 284 IVWGLCADRIGLK---KTFSIGLLMSFLFI--------FPL--FRIPQDNYLLLGACLFG 330
Query: 295 LVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFA--VKTWPTLHLALGNGI 352
L+A++VG + L + FP+EV+G+ GL LA G F TW + + LG +
Sbjct: 331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAAL 390
Query: 353 FF 354
F
Sbjct: 391 TF 392
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 30.0 bits (68), Expect = 2.0
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGV 42
D+ GR+P ++L + + L + S I L + RF+
Sbjct: 65 DRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAF 105
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 29.6 bits (67), Expect = 2.6
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEG 45
D+ GRKP I + II LL + + T + GRFL G+ G
Sbjct: 63 DRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAG 106
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 29.9 bits (68), Expect = 2.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATI 53
D GRKP I+ +V + + + TI L RFL G++ +A+ + +
Sbjct: 51 DSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLA---AAAASVV 99
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 29.7 bits (67), Expect = 2.6
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 311 GEIFPMEVK----GVAAGLATCLAYI--FGFFAVKTWPTLHLALGNGIFF-----FYGLV 359
GE+FP + G++A A I FGF + GI+ + L
Sbjct: 418 GEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALF 477
Query: 360 AAIGTAHVLAYLPETKGKSLEEI 382
+G L +PETKGKSLEE+
Sbjct: 478 MFLGILFTL-LIPETKGKSLEEL 499
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 29.9 bits (68), Expect = 2.7
Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 30/196 (15%)
Query: 186 ISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPH-- 243
+S F+ Q + N + F + Y + I S+++ H
Sbjct: 241 LSYFWFISQLAQANFPAYAKEVLGLDNTFQV--QYLLAASAIGIGIGSLLAGRLSGRHIE 298
Query: 244 TGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFN---LIPLAALVLNLVASSV 300
G+ PL A G+ALS+ ++ T ++ F +GF ++PL AL+
Sbjct: 299 LGLVPLGAL---GLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE 355
Query: 301 GFLPIPYLMLGEIFPME--VKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGL 358
LG++ ++ V L L +F + G+F+ L
Sbjct: 356 ---------LGKVLAANNFLQNVGMLLFLALTTLFSGLGLSP---------AGLFYLIAL 397
Query: 359 VAAIGTAHVLAYLPET 374
V IGT + L LP++
Sbjct: 398 VTLIGTLYTLLLLPDS 413
>gnl|CDD|153403 cd08034, LARP_1_2, La RNA-binding domain proteins similar to
La-related proteins 1 and 2. This domain is found in
proteins similar to vertebrate La-related proteins 1 and
2 (LARP1, LARP2). A variety of La-related proteins
(LARPs or La ribonucleoproteins), with differing domain
architecture, appear to function as RNA-binding proteins
in eukaryotic cellular processes.
Length = 73
Score = 27.4 bits (61), Expect = 3.3
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 166 STTNIFKEF-----MKPEAYKPLIIISLFFLFQQFSA-VNVILAYMTD 207
S N+ K+F M PE Y P+ +I+ F Q + VN+IL + D
Sbjct: 13 SVDNLEKDFFLRRKMDPEGYLPIALIASFHRVQALTTDVNLILEALKD 60
>gnl|CDD|237522 PRK13822, PRK13822, conjugal transfer coupling protein TraG;
Provisional.
Length = 641
Score = 29.2 bits (66), Expect = 4.7
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 66 LRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPE 118
R A A A GLL + F + R K A + LG I I + E
Sbjct: 45 GRAGPALPLVLAAAAGLLFL-FAAAGHRRIKPAGWGVLAGFLGVIAIY-ALRE 95
>gnl|CDD|114869 pfam06176, WaaY, Lipopolysaccharide core biosynthesis protein
(WaaY). This family consists of several bacterial
lipopolysaccharide core biosynthesis proteins (WaaY or
RfaY). The waaY, waaQ, and waaP genes are located in the
central operon of the waa (formerly rfa) locus on the
chromosome of Escherichia coli. This locus contains
genes whose products are involved in the assembly of the
core region of the lipopolysaccharide molecule. WaaY is
the enzyme that phosphorylates HepII in this system.
Length = 229
Score = 28.6 bits (64), Expect = 5.6
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 19/56 (33%)
Query: 167 TTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFI 222
K +K + Y+ LI TD VRS G LN +++
Sbjct: 69 NERFLKSLVKGDYYENLI-------------------VQTDRVRSEGLTSLNDFYL 105
>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein. This family
includes auxin efflux carrier proteins and other
transporter proteins from all domains of life.
Length = 321
Score = 28.4 bits (64), Expect = 5.7
Identities = 13/58 (22%), Positives = 22/58 (37%)
Query: 215 HLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEK 272
+LNP + GLI+ + I P +S I +++ +G L K
Sbjct: 177 LILNPPTYASLLGLILGLVGFLLPLIFPEFIQDSISILGDAAIPMALFSLGLTLALGK 234
>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction
only].
Length = 311
Score = 28.4 bits (64), Expect = 5.7
Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 15/139 (10%)
Query: 183 LIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLL--------NPYFITVIGGLIIFASV 234
L +F + F + + + + LL NP I +I GL++
Sbjct: 125 LAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLLSVLKKLLTNPLIIALILGLLLNLLG 184
Query: 235 ISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIP---LAAL 291
IS LP + + L+++ +G L F K L LA L
Sbjct: 185 IS----LPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPL 240
Query: 292 VLNLVASSVGFLPIPYLML 310
V LVA +G + +L
Sbjct: 241 VALLVAKLLGLSGLALQVL 259
>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell
envelope biogenesis, outer membrane].
Length = 475
Score = 28.8 bits (65), Expect = 6.2
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 342 PTLHLALGNGIFFFYGLVAAIGTAHVLAYLPETKGKSLEEIIKGFSS 388
L L G+F Y +AA+ A L G LE+I+ G +
Sbjct: 279 GEYELPLP-GLFNVYNALAAVAAALAL-------GVDLEDILAGLET 317
>gnl|CDD|225669 COG3127, COG3127, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, permease component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 829
Score = 28.9 bits (65), Expect = 6.3
Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 16/120 (13%)
Query: 273 APIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEV--KGVAAG------ 324
A ++ L P A + L ++ F +P L + P+ V +GV AG
Sbjct: 335 ASLLPVPLPAGGLWPWALALAALFLIALAFALLPLGRLRRVPPLAVLRQGVEAGVWPLLT 394
Query: 325 ---LATCLAYIFGFFAVKTWPTLHLA---LGNGIFFF--YGLVAAIGTAHVLAYLPETKG 376
A L AV L G + F LVA G L L T
Sbjct: 395 YLAGAALLLVALAALAVLMAGDRLLWAILAGAVVLAFLVLRLVAGGGLWAALRSLRLTSL 454
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 28.6 bits (64), Expect = 6.5
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 302 FLPIPY----LMLGEIFPMEVKGVAA-----GLATCLAYIFGFFAVKTWPTLHLALGNGI 352
LP+ + IFP+ V +AA L+ Y+F +++WP L+ A+ N
Sbjct: 324 TLPMMQTILMGIAIGIFPLLV--LAAVFNKLTLSVLKGYVFALMWLQSWPLLY-AILNSA 380
Query: 353 FFFYGLVAAIGTAHVLAYL 371
FY G VL+ L
Sbjct: 381 MTFYA--KQNGAPVVLSEL 397
>gnl|CDD|227292 COG4956, COG4956, Integral membrane protein (PIN domain
superfamily) [General function prediction only].
Length = 356
Score = 28.1 bits (63), Expect = 8.5
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 16/103 (15%)
Query: 221 FITVIGGLIIFASVISI--SFILPHTGVKPLSAASGMGIALSMLVIG---------TYLL 269
+IG ++ FA + + + T + A+ +I
Sbjct: 9 LFIIIGAVLGFAVIPELLADLGIQDTAFLNNEYVDALIGAIIFFLISFWFGKYVLNWLKR 68
Query: 270 FE----KAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYL 308
E K P+ +G LI + L+ L++S + LPIP++
Sbjct: 69 LEEQIRKLPVTTILFGTIGLI-IGLLIAVLLSSPLFLLPIPFI 110
>gnl|CDD|215257 PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase.
Length = 627
Score = 28.2 bits (63), Expect = 9.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 112 ITFIIPESPAWLNSKGRRGD--AEWAAKR-LRLGPPSNQTEPTSR 153
I FI+ +LN K RR D + W+ R L + P + TE SR
Sbjct: 374 IQFILDAISDYLNVKVRRSDVLSAWSGIRPLAVDPSAKSTESISR 418
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.420
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,669,800
Number of extensions: 2118182
Number of successful extensions: 4273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4153
Number of HSP's successfully gapped: 377
Length of query: 388
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 289
Effective length of database: 6,546,556
Effective search space: 1891954684
Effective search space used: 1891954684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.9 bits)