RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13784
(388 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 4e-08
Identities = 55/356 (15%), Positives = 99/356 (27%), Gaps = 95/356 (26%)
Query: 21 WLLITYSLTITNLFIG-------RFLTGVSEGLSASPA---TIYIAESIMVQNT------ 64
W L++ + F+ +FL + P+ +YI + + N
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 65 ------KLRGSLATWATTARAFGLLQVYFMG----SLLRYRKVAAMAAIFSALGTILITF 114
+ L R + + + + + A + +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-----ALDVCLSYK---VQCKM 180
Query: 115 IIPESPAWLNSKGRRGDAEWAAKRL-RLGPPSNQTEP--TSRGDAESGAQGEQMSTTNIF 171
WLN E + L +L Q +P TSR D S + S
Sbjct: 181 --DFKIFWLNL-KNCNSPETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 172 KEFMKPEAYKPLIIISLFFL-----FQQFSAVNV---IL-----AYMTDFVRSSGFHLLN 218
+ +K + Y+ L L + ++A N+ IL +TDF+ S +
Sbjct: 235 RRLLKSKPYE----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL--SAATTTH 288
Query: 219 PYFITVIGGLI------IFASVISISFI-LPH--TGVKPLSAASGMGIALSMLVIGTYLL 269
L + + LP P LS+ I +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--------RLSI--IAESIR 338
Query: 270 FEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIP------YLMLGEIFPMEVK 319
A W + + L ++ SS+ L P + L +FP
Sbjct: 339 DGLA-----TWDNWKHVNCDKL-TTIIESSLNVLE-PAEYRKMFDRLS-VFPPSAH 386
Score = 32.5 bits (73), Expect = 0.25
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 34/137 (24%)
Query: 86 YFMGSLLRYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPS 145
YF + + K + + + F +L K R W A
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDF------RFLEQKIRHDSTAWNA--------- 516
Query: 146 NQTEPTSRGDAESGAQGEQMSTTNIFKEFMKP--EAYKPLIIISLFFLFQQFSAVNVILA 203
SG+ + +K ++ Y+ L+ L FL + N+I +
Sbjct: 517 ------------SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK--IEENLICS 562
Query: 204 YMTDFVRSSGFHLLNPY 220
TD +R + L+
Sbjct: 563 KYTDLLRIA---LMAED 576
Score = 30.2 bits (67), Expect = 1.4
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 65 KLRGSLATWATTARAFGLLQVYFMGSLLRYRK-VAAMAAIFSALGTILITFIIPESPAWL 123
K+R W + LQ L Y+ + + L ++ F+ +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQ-----LKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 124 NSK 126
SK
Sbjct: 561 CSK 563
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 4e-06
Identities = 54/363 (14%), Positives = 105/363 (28%), Gaps = 122/363 (33%)
Query: 108 GTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMST 167
G++ ++P + ++ + A +L+ EPT A E +
Sbjct: 14 GSLEHVLLVPTA-SF-----------FIASQLQEQFNKILPEPT----EGFAADDEPTTP 57
Query: 168 TNIFKEFM----------KPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFH-- 215
+ +F+ K + + L +F ++ + H
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQV----LNLCLTEFE---------NCYLEGNDIHAL 104
Query: 216 ---LLNPYFITVIGGLIIFASVISISFILPHTGVKP----LSAASGMGIALSMLVIG--- 265
LL T++ + + I+ + K L A G G A + + G
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 266 ---TYL-----LFEK-APIVNFEWGFFNLIPLAALVL-NLVASSV--------GF----- 302
Y L++ +V +LI +A L L+ +++ G
Sbjct: 165 NTDDYFEELRDLYQTYHVLVG------DLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 303 L-------PIPYLMLGEI-FPM---------------------EVKGVAAGLATCLAYIF 333
L YL+ I P+ E++ G +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 334 G--FFA-VKTWPTLHLALGNGI-FFFYGLVAAIGTAHVLAY----LPETKGKSLEEIIKG 385
A +W + +++ I F+ IG AY LP + + E +G
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFF-----IGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 386 FSS 388
S
Sbjct: 334 VPS 336
Score = 47.7 bits (113), Expect = 5e-06
Identities = 71/407 (17%), Positives = 113/407 (27%), Gaps = 168/407 (41%)
Query: 35 IGRFLTGVSEGLSASPATIY--IAESIMV--QNTKLRG----SLA------TWATTARAF 80
+G+FL VS + S + + + +N L G +LA T +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 81 GLLQVYFMG--------------SLLR--YRKVAAMAAIFSALGTI-------------- 110
L++ Y +L R A + AIF G
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 111 --LITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQ--TEPTSRGDAESGAQGEQMS 166
L+ +I S L+ R A K G + P++ D
Sbjct: 181 HVLVGDLIKFSAETLSELIR--TTLDAEKVFTQGLNILEWLENPSNTPD----------- 227
Query: 167 TTNIFKEFMK--PEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFH--LLNPYF- 221
K+++ P + PLI + Q LA+ + GF L Y
Sbjct: 228 -----KDYLLSIPISC-PLI-----GVIQ--------LAHYVVTAKLLGFTPGELRSYLK 268
Query: 222 -ITVIGGLIIFASVISIS-----------------FIL--------PHTGVKPL----SA 251
T ++ A I+ + F + P+T + P S
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 252 ASGMGIALSML-VIG--------------TYLLFEKA---PIVNFEWGFFNLI----P-- 287
+ G+ ML + ++L K +VN G NL+ P
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN---GAKNLVVSGPPQS 385
Query: 288 LAALVLNL--------------------VASSVGFLPI------PYL 308
L L L L + S FLP+ L
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 30.6 bits (70), Expect = 0.97
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 158 SGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLL 217
SG+ G + ++KP Y +++ F+ + + V G
Sbjct: 3 SGSGGGGG--SKTLARYLKP--YWIFAVLAPLFMVVEVICDLSQPTLLARIVD-EGIARG 57
Query: 218 NPYFITVIGGLIIFASVISISF 239
+ + G L++ ++I
Sbjct: 58 DFSLVLKTGILMLIVALIGAVG 79
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 28.0 bits (63), Expect = 6.0
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 27/132 (20%)
Query: 2 DKLGRKPAIILIGIVG-IIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
D++GR+P +IL+G+ ++ L+ + ++T L + G+ G +A ++
Sbjct: 60 DRVGRRP-VILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTG-----VGGVMARTLP 113
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFM----------GSLLRY---RKVAAMAAIFSAL 107
L A LL + + G L R + A
Sbjct: 114 RD-------LYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG 166
Query: 108 GTILITFIIPES 119
T + +PE+
Sbjct: 167 VTFSMARWMPET 178
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 26.6 bits (59), Expect = 7.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 110 ILITFIIPESPAWLNSKGRRGDA 132
I I ++ +SPA N + GD
Sbjct: 41 IFIKHVLEDSPAGKNGTLKPGDR 63
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 26.1 bits (58), Expect = 7.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 110 ILITFIIPESPAWLNSKGRRGDA 132
I I I+P+SPA L + + GD
Sbjct: 39 IFIKGIVPDSPAHLCGRLKVGDR 61
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 27.6 bits (62), Expect = 7.9
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 16/75 (21%)
Query: 1 MDKLGRKPAIILIGIVGI---IGWLLITYSLTITNLFIGR---FLTGVS-------EGLS 47
+D+ G + + ++ I I + + G F V+ EGL
Sbjct: 254 LDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGL- 312
Query: 48 ASPATIYIAESIMVQ 62
PA I ++ +
Sbjct: 313 --PAVITTCLALGTR 325
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.420
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,963,191
Number of extensions: 369737
Number of successful extensions: 1082
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1071
Number of HSP's successfully gapped: 43
Length of query: 388
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 293
Effective length of database: 4,049,298
Effective search space: 1186444314
Effective search space used: 1186444314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.4 bits)