RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13784
         (388 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 42.0 bits (97), Expect = 9e-05
 Identities = 48/389 (12%), Positives = 105/389 (26%), Gaps = 33/389 (8%)

Query: 1   MDKLGRKP----AIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIA 56
            D+   +      +IL   V +    +   + +I  +F+  FL G  +G+   P    + 
Sbjct: 83  SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 142

Query: 57  ESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFII 116
                +      S           G+  + F+  +  +    A   + +    ++  F  
Sbjct: 143 HWWSQKERGGIVS-VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201

Query: 117 PESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMK 176
                   S G     E+            + E T++                       
Sbjct: 202 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIF-----------------MQY 244

Query: 177 PEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVIS 236
               K L  I++  +F       ++    T       F L    +   +         + 
Sbjct: 245 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL 304

Query: 237 ISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLV 296
             ++          A     + L  +    Y +              N       ++ + 
Sbjct: 305 CGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM----------NPAGNPTVDMICMIVIG 354

Query: 297 ASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKT-WPTLHLALGNGIFFF 355
               G + +  L   E+ P +  G AAG      Y+ G  A            G    F 
Sbjct: 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 414

Query: 356 YGLVAAIGTAHVLAYLPETKGKSLEEIIK 384
             +  +I    +L  +   + +  E++++
Sbjct: 415 VMIGGSILAVILLIVVMIGEKRRHEQLLQ 443


>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII)
           {Helicobacter pylori [TaxId: 210]}
          Length = 217

 Score = 29.4 bits (65), Expect = 0.52
 Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 8/54 (14%)

Query: 49  SPATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAA 102
                 +   ++ QNT        +    ++   L+  F+        +  +A 
Sbjct: 28  LKFEALLGA-VLTQNT-------KFEAVLKSLENLKNAFILENDDEINLKKIAY 73


>d2i76a1 a.100.1.10 (A:155-257) Hypothetical protein TM1727
           {Thermotoga maritima [TaxId: 2336]}
          Length = 103

 Score = 25.5 bits (56), Expect = 5.2
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 135 AAKRLRLGPPSNQTEPTSRGDAE 157
           A    ++    + T P  RGD +
Sbjct: 46  ADNIKKMRVECSLTGPVKRGDWQ 68


>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma
           pneumoniae [TaxId: 2104]}
          Length = 141

 Score = 25.9 bits (56), Expect = 5.6
 Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 2/25 (8%)

Query: 315 PMEVKGVAAGLATCLAYIFGFFAVK 339
           P+    + +GLA C        A  
Sbjct: 41  PLAA--LLSGLAACELATANLMAPA 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,398,697
Number of extensions: 63062
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 17
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.8 bits)