Query psy13786
Match_columns 219
No_of_seqs 250 out of 1634
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 20:28:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 4.5E-22 1.5E-26 161.3 15.1 162 52-216 30-227 (438)
2 4gc0_A D-xylose-proton symport 99.9 6.4E-22 2.2E-26 162.8 15.8 171 43-216 7-218 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.9 8.3E-22 2.8E-26 160.2 13.2 170 45-217 25-205 (451)
4 2gfp_A EMRD, multidrug resista 99.8 2E-20 6.7E-25 148.9 12.3 156 55-213 7-169 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.8 9.9E-20 3.4E-24 149.8 15.8 138 76-216 50-194 (491)
6 2xut_A Proton/peptide symporte 99.8 3.8E-18 1.3E-22 141.5 15.1 136 77-215 51-195 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.7 3.9E-15 1.3E-19 120.8 16.7 138 76-216 284-431 (451)
8 2cfq_A Lactose permease; trans 99.5 3.6E-14 1.2E-18 114.6 11.3 135 79-216 258-397 (417)
9 4gc0_A D-xylose-proton symport 99.5 2.1E-14 7.1E-19 117.9 7.7 140 76-218 308-462 (491)
10 3o7q_A L-fucose-proton symport 99.5 1.6E-13 5.4E-18 111.0 11.9 132 76-213 291-427 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.5 1.2E-13 4E-18 113.5 9.7 139 76-217 315-470 (491)
12 2cfq_A Lactose permease; trans 99.4 2.7E-14 9.1E-19 115.4 0.8 133 76-211 39-180 (417)
13 2gfp_A EMRD, multidrug resista 99.2 1.1E-11 3.8E-16 98.3 6.7 122 76-203 231-361 (375)
14 2xut_A Proton/peptide symporte 99.0 1.1E-09 3.8E-14 90.5 9.7 132 81-215 336-499 (524)
15 2g9p_A Antimicrobial peptide l 71.8 1.6 5.4E-05 18.9 1.0 14 99-112 2-15 (26)
16 4dve_A Biotin transporter BIOY 34.8 93 0.0032 21.9 5.4 24 87-110 100-123 (198)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.88 E-value=4.5e-22 Score=161.27 Aligned_cols=162 Identities=15% Similarity=0.059 Sum_probs=141.5
Q ss_pred HHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHH-
Q psy13786 52 IVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM- 127 (219)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~- 127 (219)
.+.+..+..++......+..|.+. |.++.+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 333444555555566666677665 9999999999999999999999999999999999999999999999999998
Q ss_pred --HhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----h----
Q psy13786 128 --ATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----W---- 196 (219)
Q Consensus 128 --~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~---- 196 (219)
.++++++.+++.|++.|++.+...+...+++.|++|++ +|++++++.+.+..+|..++|.+++.+ +
T Consensus 110 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 186 (438)
T 3o7q_A 110 PAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES---SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ 186 (438)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST---THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCH
T ss_pred hccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 78899999999999999999999999999999999999 999999999999999999999998876 2
Q ss_pred ---------------------hHHHHHHHHHHHHHHHHHHH
Q psy13786 197 ---------------------YTTVAYIGAFVSFLSLVLVA 216 (219)
Q Consensus 197 ---------------------w~~~~~~~~~~~~~~~~~~~ 216 (219)
||+.|++.++..++..++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 187 DVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999887777666555443
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.88 E-value=6.4e-22 Score=162.76 Aligned_cols=171 Identities=22% Similarity=0.310 Sum_probs=145.3
Q ss_pred hHHHHHHHHHHHHhhhhhhccccccccchhhcc-----------cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCch
Q psy13786 43 LFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS-----------YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKS 111 (219)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~ 111 (219)
.+..+.+.++..++.+.++++.+.++..+|.+. +.++.+.+++.+.+.+|..+|++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 344566667777888899999988887777654 123456789999999999999999999999999999
Q ss_pred hhhHhhHHHHHHHHHHH------------------hhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhH
Q psy13786 112 ALMITNVPSLCGWLLMA------------------TKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSL 173 (219)
Q Consensus 112 ~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 173 (219)
++.++.+++.++.++++ .++|++.++++|++.|++.|+..+..+.+++|..|++ +|++.
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~---~rg~~ 163 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH---IRGKL 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG---GHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH---hhhhh
Confidence 99999999999999988 4789999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHHHHHHHHHHHHHH
Q psy13786 174 STWSTIALTSGILLSYLTGAFF------------WYTTVAYIGAFVSFLSLVLVA 216 (219)
Q Consensus 174 ~~~~~~~~~~g~~~~~~~~~~~------------~w~~~~~~~~~~~~~~~~~~~ 216 (219)
.++.+.+..+|..+++.++... +||+.+....+..++..+..+
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T 4gc0_A 164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLY 218 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGG
T ss_pred HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhh
Confidence 9999999999999988877654 577777777666666555443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.87 E-value=8.3e-22 Score=160.19 Aligned_cols=170 Identities=15% Similarity=0.108 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHhhhhhhccccccccchhhcc-c-CChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHH
Q psy13786 45 RLIYLGLIVILPGVAPGMSFGFPAVALPQMS-Y-LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLC 122 (219)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~ 122 (219)
+++.......+..+..++......+.+|.+. + .++.+.+++.+.+.++..+++++.|+++||+|||+++.++.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 3445555556666666666666666677665 3 5778999999999999999999999999999999999999999999
Q ss_pred HHHHHHh----hhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---
Q psy13786 123 GWLLMAT----KSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF--- 195 (219)
Q Consensus 123 ~~~~~~~----~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--- 195 (219)
+.+++++ +++++.+++.|++.|++.+...+...+++.|.+|++ +|++++++.+.+..+|..++|.+++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK---ERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT---HHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999 999999999999999999999999875
Q ss_pred -h-hHHHHHHHHHHHHHHHHHHHh
Q psy13786 196 -W-YTTVAYIGAFVSFLSLVLVAM 217 (219)
Q Consensus 196 -~-w~~~~~~~~~~~~~~~~~~~~ 217 (219)
+ ||+.|++.+++.++..++.++
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHh
Confidence 7 999999988887776655543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.84 E-value=2e-20 Score=148.95 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=139.5
Q ss_pred Hhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh
Q psy13786 55 LPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS 131 (219)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~ 131 (219)
+..+...+......+.+|.+. |.++.+.+++.+...++..+++++.|+++||+|||+++.++.++..++.++..+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 86 (375)
T 2gfp_A 7 LLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS 86 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc
Confidence 344445555555666666554 89999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHH
Q psy13786 132 DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFV 207 (219)
Q Consensus 132 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~ 207 (219)
+++.+++.|++.|++.+...+....++.|.+|++ +|++.++..+....+|..++|.+++.+ +||+.+++.++.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT---QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999999999887 899999988877
Q ss_pred HHHHHH
Q psy13786 208 SFLSLV 213 (219)
Q Consensus 208 ~~~~~~ 213 (219)
.++..+
T Consensus 164 ~~~~~~ 169 (375)
T 2gfp_A 164 CAGVTF 169 (375)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 766554
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.83 E-value=9.9e-20 Score=149.76 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=127.5
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh-hCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786 76 YLTIDQASWFASISAITMPIGCLLSGPIIDK-YGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPA 154 (219)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~ 154 (219)
|.++.+.+++.+.+.++..+++++.|+++|| +|||+++.++.++..++.++++++++++.+++.|++.|++.+...+..
T Consensus 50 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 129 (491)
T 4aps_A 50 HITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNV 129 (491)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchH
Confidence 8899999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCccc--hhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786 155 AVYAAECITIHNTDL--RGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA 216 (219)
Q Consensus 155 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 216 (219)
.+++.|.+|++ + |+++.+.++.+..+|..++|.+++.+ +||+.|++.++..++..+..+
T Consensus 130 ~~~~~~~~~~~---~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 130 STLVGTLYDEH---DRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHSSSC---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcc---cccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 7 77788889999999999999999887 899999998777666655443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.78 E-value=3.8e-18 Score=141.47 Aligned_cols=136 Identities=15% Similarity=0.136 Sum_probs=124.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhHhHhhhhh-CCchhhhHhhHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhcchhhh
Q psy13786 77 LTIDQASWFASISAITMPIGCLLSGPIIDKY-GRKSALMITNVPSLCGWLLMATKS-DLINLYISRLLSGLSVGLATTPA 154 (219)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~~~~~ 154 (219)
.++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.++..+++ +++.+++.|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999998 99999999999999999999999
Q ss_pred hhhhhhccCCCCccchhhHHHH---HHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy13786 155 AVYAAECITIHNTDLRGSLSTW---STIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLV 215 (219)
Q Consensus 155 ~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~ 215 (219)
.+++.|.+|++ +|++..+. .+.+..+|..++|.+++.+ +|++.|++.++..++..+..
T Consensus 131 ~~~~~~~~~~~---~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 131 SSFMGDQFDQS---NKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHTCSTT---TTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99876666 8899999999999998877 89999998887766655543
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.66 E-value=3.9e-15 Score=120.81 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=119.6
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhh--CCchhhhHhhHHHH-HHHHHHHhh--hhHHHHHHHHHHHhhhhhcc
Q psy13786 76 YLTIDQASWFASISAITMPIGCLLSGPIIDKY--GRKSALMITNVPSL-CGWLLMATK--SDLINLYISRLLSGLSVGLA 150 (219)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~ 150 (219)
|.++.+.+++.+...++..++.++.|++.||+ |||+.+.++..+.. ++.++..+. .+.+.+.+..++.|++.+..
T Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 363 (451)
T 1pw4_A 284 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP 363 (451)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhch
Confidence 88999999999999999999999999999999 99999888777666 666655554 36777778888999988888
Q ss_pred hhhhhhhhhhccCCCCccchhhHHHHHHHHHHH-HHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786 151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTS-GILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA 216 (219)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 216 (219)
.+....++.|.+|++ +|+++.++.+....+ |..++|.+.+.+ +|+..|++.+++.++..++.+
T Consensus 364 ~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 364 VMLIGLHALELAPKK---AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHHHHHHTSCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999 999999999999999 999999998877 789999888887777666554
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.54 E-value=3.6e-14 Score=114.63 Aligned_cols=135 Identities=8% Similarity=0.087 Sum_probs=112.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhh
Q psy13786 79 IDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYA 158 (219)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~ 158 (219)
....+...+...++..++.++.|+++||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888899999999999999999999988888888777777777777777777778877766667778899
Q ss_pred hhccCCCCccchhhHHHH-HHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786 159 AECITIHNTDLRGSLSTW-STIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA 216 (219)
Q Consensus 159 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 216 (219)
.|.+|++ .|+++.+. ++....+|..++|.+++.+ +++..|.+.++++++..+..+
T Consensus 338 ~~~~p~~---~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 338 TSQFEVR---FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHSCHH---HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCHH---HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999998 5888899999999999877 777888888877777766544
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.51 E-value=2.1e-14 Score=117.93 Aligned_cols=140 Identities=15% Similarity=0.061 Sum_probs=103.4
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh-----hhHHHHHHHHHHHhhhhhcc
Q psy13786 76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK-----SDLINLYISRLLSGLSVGLA 150 (219)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~ 150 (219)
+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+....+..+......
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence 6667777777788888999999999999999999999999888888777665532 12222222222222222334
Q ss_pred hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHHHHHHhh
Q psy13786 151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----------WYTTVAYIGAFVSFLSLVLVAMI 218 (219)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------~w~~~~~~~~~~~~~~~~~~~~~ 218 (219)
.+..+.+.+|.+|++ .|+++.++.+....+++.+++.+...+ ++.+.|++.++++++..+..+++
T Consensus 388 ~~~~~~~~~E~fPt~---~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 462 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNA---IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 462 (491)
T ss_dssp THHHHHHHHHSSCTT---THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhe
Confidence 577789999999999 999999999999999988887765544 34456778888888887777654
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.50 E-value=1.6e-13 Score=110.97 Aligned_cols=132 Identities=12% Similarity=0.053 Sum_probs=110.1
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786 76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA 155 (219)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~ 155 (219)
|.++.+.++..+...++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++. .++.|++.+...+...
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTIF 369 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999888888888777765444 4888899888899999
Q ss_pred hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHHHHHHH
Q psy13786 156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----W-YTTVAYIGAFVSFLSLV 213 (219)
Q Consensus 156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-w~~~~~~~~~~~~~~~~ 213 (219)
.+..|.+|++ |+.+.++.. ...+|..++|.+.+.+ + ++..|++.++..++..+
T Consensus 370 ~~~~~~~~~~----~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 370 SLGIKNLGQD----TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHSSCGGG----HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHhhcccc----ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999999854 777887766 4568999999988877 6 88888876655444443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.48 E-value=1.2e-13 Score=113.55 Aligned_cols=139 Identities=12% Similarity=0.034 Sum_probs=111.8
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhh-----HhhHHHHHHHHHHHhhh---------hHHHHHHHHH
Q psy13786 76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALM-----ITNVPSLCGWLLMATKS---------DLINLYISRL 141 (219)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 141 (219)
+.+..+.++..+...++..++.++.+++.||+|||+... .+.++.+++.++..... +.+.+.+..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA 394 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 555567788888889999999999999999999997665 66666666666555532 6677778889
Q ss_pred HHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHh
Q psy13786 142 LSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAFVSFLSLVLVAM 217 (219)
Q Consensus 142 l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~ 217 (219)
+.|++.+...+....++.|.+|++ +|+++.++.+....+|..+++.+.+.. ++.+.|...++.+++..+..++
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKA---FNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTT---CSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988999999999999999 999999999999999999999998887 6667777777776666655443
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.41 E-value=2.7e-14 Score=115.38 Aligned_cols=133 Identities=13% Similarity=0.093 Sum_probs=90.8
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHH---HHHHhhhhHH-HHHHHHHHHhhhhhcch
Q psy13786 76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGW---LLMATKSDLI-NLYISRLLSGLSVGLAT 151 (219)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~l~G~~~~~~~ 151 (219)
|.++.+.+++.+...++..++++++|+++||+|||+++.++..+..+.. ....+.+... .+...+.+.|++.+...
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 118 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999998876655422 1112222111 12344555555544443
Q ss_pred hhhhhhhhhccCC--CCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHH
Q psy13786 152 TPAAVYAAECITI--HNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAFVSFLS 211 (219)
Q Consensus 152 ~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~ 211 (219)
+.......+..++ + +|+...+..+....+|..++|.+++.+ +|++.|++.++..++.
T Consensus 119 ~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 119 NAGAPAVEAFIEKVSR---RSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL 180 (417)
T ss_dssp HTTHHHHHHHHHHHHH---HHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTH
T ss_pred hhhHHHHHHHHHHhhh---hcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 3333334444332 3 467667777777788888888888876 7899888766554433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.23 E-value=1.1e-11 Score=98.29 Aligned_cols=122 Identities=14% Similarity=0.038 Sum_probs=95.6
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHH-HHHHHH--HHHh--hhhHHHHHHHHHHHhhhhhcc
Q psy13786 76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVP-SLCGWL--LMAT--KSDLINLYISRLLSGLSVGLA 150 (219)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~l~G~~~~~~ 150 (219)
|.++.+.+.+.+...++..++.++.+++.||+|+|. ..+... ...+.. .... .++.+.+.+..++.|++.+..
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 308 (375)
T 2gfp_A 231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGML 308 (375)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Confidence 788889999999999999999999999999998732 222222 222221 1222 246677777888999999999
Q ss_pred hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHH
Q psy13786 151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYI 203 (219)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~ 203 (219)
.+....+..|..| + +|+++.++.+....+|..++|.+.+.+ +|+..+..
T Consensus 309 ~~~~~~~~~~~~p-~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 309 FPLATSGAMEPFP-F---LAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp SSTTHHHHHTHHH-H---HHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCC-c---ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 9999999999998 8 899999999999999999999888877 56555554
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.02 E-value=1.1e-09 Score=90.54 Aligned_cols=132 Identities=11% Similarity=0.163 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHHHhhHhHhh----hhhCCc----hhhhHhhHHHHHHHHHHHhh---------hhHHHHHHHHHHH
Q psy13786 81 QASWFASISAITMPIGCLLSGPII----DKYGRK----SALMITNVPSLCGWLLMATK---------SDLINLYISRLLS 143 (219)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~l~----d~~Grr----~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~ 143 (219)
..+.+.+...++..++.++.+++. ||.|+| +.+.++.++.+++.++..+. .+.+.+.+..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666777777777777764 555433 45566777777776666553 3566677788999
Q ss_pred hhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh------hh---------HHHHHHHHHHH
Q psy13786 144 GLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF------WY---------TTVAYIGAFVS 208 (219)
Q Consensus 144 G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~w---------~~~~~~~~~~~ 208 (219)
|++.+...+....++.|..|++ +|++++|+.+....+|..++|.+.+.+ +| +..|++.+++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKA---MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFA 492 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTT---CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHH---HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999998877 24 33366666666
Q ss_pred HHHHHHH
Q psy13786 209 FLSLVLV 215 (219)
Q Consensus 209 ~~~~~~~ 215 (219)
++..++.
T Consensus 493 ~~~~~~~ 499 (524)
T 2xut_A 493 ILAAIVF 499 (524)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=71.81 E-value=1.6 Score=18.86 Aligned_cols=14 Identities=50% Similarity=0.895 Sum_probs=11.2
Q ss_pred hHhHhhhhhCCchh
Q psy13786 99 LSGPIIDKYGRKSA 112 (219)
Q Consensus 99 ~~g~l~d~~Grr~~ 112 (219)
++|.+..+||||..
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=34.79 E-value=93 Score=21.94 Aligned_cols=24 Identities=17% Similarity=0.038 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhHhHhhhhhCCc
Q psy13786 87 SISAITMPIGCLLSGPIIDKYGRK 110 (219)
Q Consensus 87 ~~~~~~~~~~~~~~g~l~d~~Grr 110 (219)
.-+.++..+++.+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 445677777888888888886543
Done!