RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13786
(219 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 75.8 bits (187), Expect = 4e-16
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 73 QMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM--ATK 130
+ + SI ++ IG L +G + D++GRK +L+I NV + G LL A
Sbjct: 39 GACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKG 98
Query: 131 SDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYL 190
L + R++ GL VG + +Y +E I LRG+L + + +T GIL++ +
Sbjct: 99 KSFYMLIVGRVIVGLGVGGISVLVPMYISE---IAPKKLRGALGSLYQLGITFGILVAAI 155
Query: 191 TGAFFWYT 198
G
Sbjct: 156 IGLGLNKY 163
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 62.0 bits (151), Expect = 2e-11
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 16/154 (10%)
Query: 75 SYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM---ATKS 131
+ SI + IG L +G + D++GRK +L+I + + G +LM A
Sbjct: 66 DSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFAL 125
Query: 132 DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLT 191
+ L + R+L G+ VG+A+ +Y +E I LRG+L++ +A+T GIL++Y
Sbjct: 126 SVEMLIVGRVLLGIGVGIASALVPMYLSE---IAPKALRGALTSLYQLAITFGILVAYGF 182
Query: 192 G--AFFWYTTVAY--------IGAFVSFLSLVLV 215
G T+ + I A + FL L +
Sbjct: 183 GSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFL 216
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 53.5 bits (129), Expect = 2e-08
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 4/163 (2%)
Query: 61 GMSFGFPAVALPQMSY---LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITN 117
G+ G + ALP ++ L+ QA S ++ +G LL+G + D++GR+ L++
Sbjct: 12 GLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGL 71
Query: 118 VPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSL-STW 176
+ G LL+A S L L + R L GL G AA AE L S
Sbjct: 72 LLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAG 131
Query: 177 STIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII 219
+ G LL L + + I A + L +L+ ++
Sbjct: 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
Score = 38.1 bits (89), Expect = 0.002
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 2/179 (1%)
Query: 43 LFRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGP 102
L L+ L L L + + L ++ L+ +A S+ + +G LL G
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 103 IIDKYGRKSALMITNVP-SLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAEC 161
+ D+ GR+ L++ + + G LL+A L L ++ LL G +G A A+E
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASEL 293
Query: 162 ITIHNTDLRGSL-STWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII 219
L +T+ ++ G LL+ L Y V I A ++ L+ +L+ ++
Sbjct: 294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 47.4 bits (113), Expect = 1e-06
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 1/144 (0%)
Query: 77 LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINL 136
++ + + ++ + L+G + D++GR+ L+I + G LL+ S L L
Sbjct: 29 ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL 88
Query: 137 YISRLLSGLSVGLATTPAAVYAAECITIHNTDLR-GSLSTWSTIALTSGILLSYLTGAFF 195
+ R+L GL G AA A+ G LS + G LL L + F
Sbjct: 89 LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148
Query: 196 WYTTVAYIGAFVSFLSLVLVAMII 219
+ I A ++ L+ VL A+++
Sbjct: 149 GWRAAFLILAILALLAAVLAALLL 172
Score = 27.0 bits (60), Expect = 8.3
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Query: 81 QASWFASISAITMPIGCLLSGPIIDKYGRKSALMIT---NVPSLCGWLLMATKSDLINLY 137
A ++ + IG LL G + D+ GR+ L++ + + G L++ + L
Sbjct: 238 LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLL 297
Query: 138 ISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLS 188
++ LL G GL ++ + + RG+ S A + G L
Sbjct: 298 VALLLLGFGAGLVFPALNALVSD---LAPKEERGTASGLYNTAGSLGGALG 345
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 47.0 bits (112), Expect = 2e-06
Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 1/179 (0%)
Query: 40 TPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLL 99
+ +R I L +++L + GF A A+ L Q + S I M G L
Sbjct: 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALF 71
Query: 100 SGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAA 159
GP+ D+ GR+ L+ + + LL A +++ L I R L+GL +G +
Sbjct: 72 FGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVS 131
Query: 160 E-CITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAM 217
E G + I G L+ F + ++ Y+G L L+L+
Sbjct: 132 EYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR 190
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 44.2 bits (105), Expect = 2e-05
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 25/121 (20%)
Query: 94 PIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLIN---------------LYI 138
P+G ++ G D+ GRK L+IT L+M + LI L +
Sbjct: 49 PLGAIVFGHFGDRIGRKKTLVIT-------LLMMGIGTLLIGLLPSYATIGIWAPILLLL 101
Query: 139 SRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYT 198
+RL+ G S+G AA+Y AE RG ++ + G+LL+ LT Y
Sbjct: 102 ARLIQGFSLGGEWGGAALYLAEYAPPGK---RGFYGSFQQVGAPVGLLLAALTVLLLSYL 158
Query: 199 T 199
Sbjct: 159 L 159
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 41.6 bits (98), Expect = 1e-04
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 16/118 (13%)
Query: 85 FASISA-ITMPIGCLLSGPIIDKYGRKSAL-------MITNVPSLCGWLLMATKSD---- 132
F SA I IG L G +++GR+ +L I+ + S +
Sbjct: 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTG 118
Query: 133 -LINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSY 189
+ I R++ G+ VGLA+ + +Y AE I +RG L +++ A+ G L+ Y
Sbjct: 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAE---IAPAHIRGKLVSFNQFAIIFGQLVVY 173
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 40.3 bits (94), Expect = 4e-04
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 77 LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINL 136
LT + ++ A+ + I P G L G + DK+GRK +M + V G L S +I L
Sbjct: 50 LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109
Query: 137 YISRLLSGLSVGLATTPAAVYAAE 160
+SR + G+ + A+ YA E
Sbjct: 110 TLSRFIVGMGMAGEYACASTYAVE 133
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 38.3 bits (89), Expect = 0.002
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 77 LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINL 136
LT A+ S + I+ G L+ G D+YGR+ ++ + V G L I +
Sbjct: 44 LTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITM 103
Query: 137 YISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFW 196
+I+RL+ G+ +G +A Y E H LR S L SG + + A +
Sbjct: 104 FIARLVIGIGMGGEYGSSAAYVIESWPKH---LRNKASGL----LISGYAVGAVVAAQVY 156
Query: 197 YTTVAYIG 204
V G
Sbjct: 157 SLVVPVWG 164
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 36.5 bits (85), Expect = 0.003
Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 2/137 (1%)
Query: 83 SWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLL 142
+ A+ I LSG + D++GRK L++ + + A S++ L I+R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 143 SGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAY 202
G A A A+ +L S +L L G +
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEE--RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118
Query: 203 IGAFVSFLSLVLVAMII 219
F++ L+L ++
Sbjct: 119 PFLFLAILALAAFILLA 135
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 36.6 bits (85), Expect = 0.007
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 77 LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINL 136
LT QA+ S + I+ G LL G + D+YGR+ A++I+ V G L L
Sbjct: 52 LTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTL 111
Query: 137 YISRLLSGLSVGLATTPAAVYAAE 160
+I+RL+ G+ + +A Y E
Sbjct: 112 FIARLVIGMGMAGEYGSSATYVIE 135
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 35.3 bits (82), Expect = 0.015
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 69 VALPQMSY---LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWL 125
VA P+M+ L + Q W S + + G LL G + D+ GRK L+++ L G
Sbjct: 36 VAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA--LFGLF 93
Query: 126 LMATK--SDLINLYISRLLSGLSVGLA 150
+AT D +L ++RLL+G+ +G A
Sbjct: 94 SLATAQAWDFPSLLVARLLTGVGLGGA 120
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 35.2 bits (81), Expect = 0.019
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 94 PIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT--KSDLIN------LYISRLLSGL 145
PIG L G I DK+GRK +++I+ G L++A + I L ++RL GL
Sbjct: 77 PIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGL 136
Query: 146 SVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLT 191
SVG +A Y +E + +G +++ + L G LL+ L
Sbjct: 137 SVGGEYGTSATYMSE---VAVEGRKGFYASFQYVTLIGGQLLALLV 179
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 35.0 bits (80), Expect = 0.031
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 84 WFASISAITMPIGCLLSGPIIDKYGRKSALMIT-NVPSLCGWLLMATKSDLINLY----I 138
I + M +G G + DK GRK L+I +V + S + Y
Sbjct: 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFF-----SSFVQGYGFFLF 260
Query: 139 SRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTW 176
RLLSG +G A Y AE + + RG +W
Sbjct: 261 CRLLSGFGIGGAIPIVFSYFAEFLA---QEKRGEHLSW 295
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 34.4 bits (79), Expect = 0.039
Identities = 38/187 (20%), Positives = 71/187 (37%), Gaps = 23/187 (12%)
Query: 45 RLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQAS--WFASISAITMPIGCLLSGP 102
R + L + V+ + + +G+ P + +A+ ++ +T + G
Sbjct: 1 RWLQLVIGVVCMCMIANLQYGWTLFVNPIDATHGWGRAAIQVAFTLFVVTETWLVPIEGW 60
Query: 103 IIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECI 162
+DKYG + +M + GW+L A L LY + +++G+ G AVY C+
Sbjct: 61 FVDKYGPRIVVMFGGIMCGLGWVLNAYADSLPALYAAAVVAGIGAG------AVYGT-CV 113
Query: 163 TIHNT---DLRG----------SLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSF 209
D RG T+ + ++ A F Y + G +
Sbjct: 114 GNALKWFPDKRGLAAGLTAAGFGAGAALTVVPIAAMIKVSGYQAAFMYFGLG-QGIVIVL 172
Query: 210 LSLVLVA 216
L+L+L A
Sbjct: 173 LALLLRA 179
>gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 455
Score = 34.3 bits (79), Expect = 0.040
Identities = 25/104 (24%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 58 VAPGMSFGFP-AVA-----LPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKS 111
V+ G S+ FP AV L Q+ T + +W +SI + G +S +++++G +
Sbjct: 26 VSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRP 85
Query: 112 ALMITNVPSLCGWLLMATKSDLINLYISR-LLSGLSVGLATTPA 154
++ + + G +L + S++I LY++ ++GL + P+
Sbjct: 86 VVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPS 129
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 32.8 bits (75), Expect = 0.13
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 87 SISAITMPIGCLLSGPIIDKYGRKSALMIT----NVPSLCGWLLMATKS----DLINLYI 138
S+ + P+G L G + DKYGR+ L IT ++ + C L+ + + I L +
Sbjct: 64 SVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLL 123
Query: 139 SRLLSGLSVGLATTPAAVYAAE 160
++ G SVG T A+++ AE
Sbjct: 124 CKMAQGFSVGGEYTGASIFVAE 145
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 32.6 bits (75), Expect = 0.15
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 61 GMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITN 117
G + P LP ++ ++ A + A+ + +G L + + R+ L+
Sbjct: 26 GTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLL 85
Query: 118 VPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAE 160
+ LL A L ++R L+GL+ G+ + AA AA
Sbjct: 86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAAR 128
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 31.5 bits (72), Expect = 0.29
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 95 IGCLLSGPII----DKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLA 150
+G LL + D++GRK L+++ + + +L A + + RLL G+ +G
Sbjct: 138 VGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGI 197
Query: 151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILL 187
A V E + R + T + + G++L
Sbjct: 198 WVQAVVLNTEFLPKK---QRAIVGTLIQVFFSLGLVL 231
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 31.4 bits (72), Expect = 0.31
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 80 DQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM--ATKSDLINLY 137
S I I +G L + ++G+K ++ + + G +L+ L
Sbjct: 257 GLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFL 316
Query: 138 ISRLLSGLSVGLATTPAAVYAAECI 162
+ +L+G+ +GLAT A+ +
Sbjct: 317 VLVVLAGIGLGLATLLPWAMLADVV 341
>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional.
Length = 434
Score = 31.1 bits (71), Expect = 0.45
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 94 PIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT---------KSDLINLYISRLLSG 144
P+G ++ G ID+ GR+ L++T G LL+A + L+ L + RLL G
Sbjct: 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVL-LGRLLQG 128
Query: 145 LSVGLATTPAAVYAAECITIHNTDLRGSLSTW 176
S G+ +VY AE T +G ++W
Sbjct: 129 FSAGVELGGVSVYLAEIATPGR---KGFYTSW 157
>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein. Members of this protein
family average over 900 residues in length and appear to
have multiple membrane-spanning helices in the
N-terminal half. The extreme C-terminal region consists
of a motif with consensus sequence MSEP, then a
transmembrane alpha helix, then a short region with
several basic residues. This region, hereby dubbed
MSEP-CTERM, resembles other putative sorting signals
associated with the archaeosortase/exosortase protein
family (see TIGR04178). Genes for all members of this
family are found next to a gene for exosortase K.
Length = 920
Score = 31.2 bits (71), Expect = 0.50
Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 20/187 (10%)
Query: 43 LFRLIYLGLIVILP----GVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCL 98
L + ++ L + LP SF + T+ A + I
Sbjct: 3 LHKPYWILLSITLPQLLLLGLFYTSFDIIK---GLLGPATLFTAFGGILLLLFLGIISYY 59
Query: 99 LSGPIIDKYGRKSALMITNVPSLC-GWLLMATKSDLINLYISR-LLSGLS----VGLATT 152
+ I +K K ++ +C + ++A +LI I ++S ++
Sbjct: 60 VYKKIREKNISKVYWLLLLGLYICFSYFMIALYENLIPSDIPDWMISSINFPLYPLYLLM 119
Query: 153 PAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSL 212
PA Y + T S + A+ I FF Y I SF+ L
Sbjct: 120 PAIFYLILDLAFKFTPSEKSRNNGINFAVAVSI-------PFFIYVLANIILINGSFIGL 172
Query: 213 VLVAMII 219
+ MI
Sbjct: 173 NHLIMIF 179
>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 30.6 bits (69), Expect = 0.67
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 23/65 (35%)
Query: 53 VILPGVAPGMSF-GFPA----------------------VALPQMSYLTIDQASWFASIS 89
V P +APG+SF G PA V LP + D +W+AS+
Sbjct: 313 VFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYASLE 372
Query: 90 AITMP 94
A+ +P
Sbjct: 373 ALGIP 377
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 30.1 bits (68), Expect = 0.75
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 81 QASWFA---SISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLY 137
A WF A++MP+G G + DK+G ++ M+ + G+ A L LY
Sbjct: 40 VAIWFTLLLIGLAMSMPVG----GLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALY 95
Query: 138 ISRLLSGLSVGLA 150
++ L+ VG+A
Sbjct: 96 LTYGLASAGVGIA 108
>gnl|CDD|187749 cd09291, Photo-RC_M, Subunit M of bacterial photosynthetic reaction
center. Bacterial photosynthetic reaction center (RC)
complex, subunit M. The bacterial photosynthetic
reaction center couples light-induced electron transfer
with pumping protons across the membrane using reactions
involving a quinone molecule (QB) that binds two
electrons and two protons at the active site. The
reaction center consists of three membrane-bound
subunits, designated L, M, and H, plus an additional
extracellular cytochrome subunit. The L and M subunits
are arranged around an axis of 2-fold rotational
symmetry perpendicular to the membrane, forming a
scaffold that maintains the cofactors in a precise
configuration. The L and M subunits have both sequence
and structural similarity, suggesting a common
evolutionary origin. The L and M subunits bind
noncovalently to the nine cofactors in 2-fold symmetric
branches: four bacteriochlorophylls (Bchl), two
bacteriopheophytins (Bphe), two ubiquinone molecules (QA
and QB), and a non-heme iron. Two Bchls on the
periplasmic side of the membrane form the 'special pair'
or dimer which is the primary electron donor for the
photosynthetic reactions. The electron transfer reaction
proceeds from the dimer to an intermediate acceptor
(PA), a primary quinone (QA), and a secondary quinone
(QB). Protons are translocated from the bacterial
cytoplasm to the periplasmic space, generating an
electrochemical gradient of protons (the protonmotive
force) that can be used to power reactions such as ATP
synthesis. The RC complex is found in photosynthetic
bacteria, such as purple bacteria and other
proteobacteria species.
Length = 297
Score = 29.7 bits (67), Expect = 1.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 82 ASWFASISAITMPIGCLLSGPIIDKY 107
A WFA + IT IG LLSG ++D +
Sbjct: 258 AWWFAVLVVITGGIGILLSGTVVDNW 283
>gnl|CDD|237736 PRK14504, PRK14504, photosynthetic reaction center subunit M;
Provisional.
Length = 315
Score = 28.5 bits (64), Expect = 2.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 82 ASWFASISAITMPIGCLLSGPIID 105
A WFA + +T IG LL+G ++D
Sbjct: 269 AWWFAVLCTLTGGIGILLTGTVVD 292
>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase. This is a
family of putative methyltransferases. The aligned
region contains the GXGXG S-AdoMet binding site
suggesting a putative methyltransferase activity.
Length = 198
Score = 28.4 bits (64), Expect = 2.6
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 73 QMSYLTIDQASWFASISAITMPIGC 97
T+D + F + + + IGC
Sbjct: 5 DYQNFTLDWQALFGNEQPLFLEIGC 29
>gnl|CDD|129977 TIGR00899, 2A0120, sugar efflux transporter. This family of
proteins is an efflux system for lactose, glucose,
aromatic glucosides and galactosides, cellobiose,
maltose, a-methyl glucoside and other sugar compounds.
They are found in both gram-negative and gram-postitive
bacteria [Transport and binding proteins, Carbohydrates,
organic alcohols, and acids].
Length = 375
Score = 28.2 bits (63), Expect = 3.6
Identities = 12/61 (19%), Positives = 33/61 (54%)
Query: 98 LLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVY 157
LL+G +I ++G++ +++ + + + +A + L L + +LL+ + +G+ +Y
Sbjct: 253 LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLY 312
Query: 158 A 158
Sbjct: 313 F 313
>gnl|CDD|172976 PRK14505, PRK14505, bifunctional photosynthetic reaction center
subunit L/M; Provisional.
Length = 643
Score = 28.1 bits (62), Expect = 5.0
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 82 ASWFASISAITMPIGCLLSGPII-DKYG-RKSALMITNVPSLCGW 124
A WFA+ +AIT IG LSG +I D Y +SA ++ +P+L W
Sbjct: 592 AWWFAAFTAITGAIGLFLSGTLIPDWYAWGESAKIVAPMPNLDYW 636
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 27.3 bits (60), Expect = 7.0
Identities = 15/71 (21%), Positives = 36/71 (50%)
Query: 80 DQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYIS 139
+ F+++ + + L+ G + D++GR+ ++ T++ L G ++ T + L +
Sbjct: 78 ENQGLFSTLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLAA 137
Query: 140 RLLSGLSVGLA 150
L G++ G A
Sbjct: 138 MTLLGVAAGPA 148
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 27.2 bits (61), Expect = 7.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 93 MPIGCLLSGPIIDKYGRKSALMI 115
+G LL GP+ D+YGRK L+
Sbjct: 54 FALGQLLWGPLSDRYGRKPVLLA 76
>gnl|CDD|217046 pfam02453, Reticulon, Reticulon. Reticulon, also know as
neuroendocrine-specific protein (NSP), is a protein of
unknown function which associates with the endoplasmic
reticulum. This family represents the C-terminal domain
of the three reticulon isoforms and their homologues.
Length = 164
Score = 26.8 bits (60), Expect = 7.6
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 185 ILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII 219
++ S W ++Y+G+ S L+L+ + +I+
Sbjct: 104 LVDSLKAAVGLW--LLSYLGSLFSGLTLLYIGVIL 136
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 26.8 bits (60), Expect = 9.0
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 93 MPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLS 146
IG L GP+ D +GRK ++ + + A + L R L GL+
Sbjct: 39 FAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLA 92
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.405
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,032,317
Number of extensions: 1035323
Number of successful extensions: 1424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1394
Number of HSP's successfully gapped: 141
Length of query: 219
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 126
Effective length of database: 6,812,680
Effective search space: 858397680
Effective search space used: 858397680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.7 bits)