RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13786
         (219 letters)



>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 20/152 (13%), Positives = 43/152 (28%)

Query: 46  LIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIID 105
               GL         G  F F  + L  +++++        +  ++   +   L G + D
Sbjct: 9   FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD 68

Query: 106 KYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIH 165
           K G +  L+      L  +           L  + L+  +  G+         A  +   
Sbjct: 69  KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128

Query: 166 NTDLRGSLSTWSTIALTSGILLSYLTGAFFWY 197
              +    +     A   G +   L  +    
Sbjct: 129 IEKVSRRSNFEFGRARMFGCVGWALGASIVGI 160


>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 37.7 bits (86), Expect = 6e-04
 Identities = 20/160 (12%), Positives = 49/160 (30%), Gaps = 8/160 (5%)

Query: 68  AVALPQMS--YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRK----SALMITNVPSL 121
           A+A+P +     +     +  S  +I       + G + D+   +    + L++     L
Sbjct: 45  ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 104

Query: 122 CGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHN--TDLRGSLSTWSTI 179
               +    S +  +++   L G   G+   P         +       +       +  
Sbjct: 105 FMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 164

Query: 180 ALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII 219
                +L       F  +    Y+ AF + L  +    ++
Sbjct: 165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 204


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 750,177
Number of extensions: 31291
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 10
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.7 bits)