BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13788
(1034 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/840 (58%), Positives = 623/840 (74%), Gaps = 43/840 (5%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y AK G +V +GILDV+QIFGRAGRPQ++ G IIT H+KL+HYL+LLT Q P
Sbjct: 835 KGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNP 894
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDE 274
IES F+ +LA DNLNAE+ALGT+ N++E
Sbjct: 895 IESQFLESLA---------------------------------DNLNAEIALGTVTNVEE 921
Query: 275 AVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMR 334
AV+W+SY+YL+VRMR NP YGIS+ DP L +HR L+ + LDKA MIRF R
Sbjct: 922 AVKWISYTYLYVRMRANPLVYGISHKAYQMDPGLEKHREQLVIEVGRKLDKARMIRFEER 981
Query: 335 TRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELH 394
T + TDLGRTAS+YYIK+N IE F E + IL+++S+A EFEQ+KVR+EE+
Sbjct: 982 TGFFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDILAIVSKAEEFEQIKVREEEIE 1041
Query: 395 ELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRA 454
ELD L + CE+P GG EN +GK+NILLQT +SRG ++SFSL+SD YV QN RI+RA
Sbjct: 1042 ELDTLLNDFCELPAPGGVENNYGKINILLQTYISRGELDSFSLISDSAYVAQNAARIVRA 1101
Query: 455 LFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIE 514
LFEI L + M R L + + + + W +PLRQ +L P +L+K+E
Sbjct: 1102 LFEIALRKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQFS----------VLPPSVLSKLE 1151
Query: 515 QRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHLTI 574
++ LTV+ +++M EI +ML +G KVKQC +IP + +E+ + PITRTVL++ L I
Sbjct: 1152 EKNLTVDKMKDMRKDEIGHMLHHVKIGLKVKQCVHQIPSIAMEATIQPITRTVLRVRLNI 1211
Query: 575 KANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDP 634
+F+WND+ T EP+WIWVEDP +D IYHSEYF++ KKQVITK + L+ TIP+ +P
Sbjct: 1212 TPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFIIQKKQVITKEPQLLVFTIPIFEP 1271
Query: 635 LPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLY 694
LP+QY IRA+SDR+LG+ ++F+HLI+PE HPPHT LL+LQPLPV+AL P+YE LY
Sbjct: 1272 LPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGHPEYEVLY 1331
Query: 695 KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLK 754
KF+HFNPIQTQIFH LYHTD NVLLGAPTGSGKT+AAE+ FRVF + P +K VYIAPLK
Sbjct: 1332 KFTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLK 1391
Query: 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRN 814
ALV+ER+ DWKV+ E +L KKVVELTGDVTPD++AI+ A +IVTTPEKWDGVSRSWQNR+
Sbjct: 1392 ALVRERIEDWKVRIEEKLGKKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQNRS 1451
Query: 815 YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATW 874
YVQ V+++IIDEIHLLG++RGPVLEVIVSR NFISS+T++ VR+VGLSTALANA+DLA W
Sbjct: 1452 YVQKVSILIIDEIHLLGDERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDLADW 1511
Query: 875 LNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFV 934
LNI + G++NFRPSVRPVPLEVHI GFPG+ YCPRMA+MNKP + AI+ HSP KPV+IFV
Sbjct: 1512 LNINQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMARMNKPAFQAIRSHSPAKPVLIFV 1571
Query: 935 SSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAA 994
SSRRQTRLT++DLI LA E +PK W+ + EM++I+ ++DSNLKLT+AFGIG HHA
Sbjct: 1572 SSRRQTRLTSLDLIAFLATEDDPKQWLKMDEREMNDIIGTVRDSNLKLTLAFGIGMHHAG 1631
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/260 (38%), Positives = 141/260 (54%), Gaps = 12/260 (4%)
Query: 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ--------CPEAKVVYI 750
N IQ+ +F Y+T+ N+L+ APTG+GKT A +T +Q E K+VY+
Sbjct: 486 LNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYV 545
Query: 751 APLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR-S 809
AP+KAL E + + E L V ELTGD+ I ++VTTPEKWD V+R S
Sbjct: 546 APMKALAAEMTNYFSKRLEP-LGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKS 604
Query: 810 WQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAK 869
+ Q V L+I+DE+HLL EDRGPVLE IV+R T+ +R++GLS L N
Sbjct: 605 VGDVALSQLVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYL 664
Query: 870 DLATWLNITKQ-GMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIY-TAIKQHSPE 927
D+AT+L++ G++ F RPVPL G ++ M++ Y +KQ
Sbjct: 665 DVATFLHVNPYIGLFYFDSRFRPVPLGQTFIGIKTTNKVQQLNHMDEVCYENVLKQIMAG 724
Query: 928 KPVMIFVSSRRQTRLTAIDL 947
VM+FV +R T TA+ L
Sbjct: 725 HQVMVFVHARNATVRTAMAL 744
Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 142/567 (25%), Positives = 239/567 (42%), Gaps = 104/567 (18%)
Query: 149 FTEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
F H+ KGTE Y+ K YV I DVLQ+ GRAGRPQ++ G A I+ K + Y
Sbjct: 1664 FPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYK 1723
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVAL 266
L P+ES+ + LAD+L NAE+A
Sbjct: 1724 KFLYEPFPVESSLLDVLADHL---------------------------------NAEIAA 1750
Query: 267 GTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKA 326
GTI + +A+ +++++Y R+ +NP Y + D V+ D + ++ ++L+E + L+ +
Sbjct: 1751 GTITSKQDAMDYITWTYFFRRLIMNPTYYNL--DNVSHD-TMNKYLSSLVEKSLFDLECS 1807
Query: 327 HMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQL 386
+ I R + GR AS YY+KH I +F + + +L +++ A E+ L
Sbjct: 1808 YCIEIGEDNRTIEPLTYGRIASYYYLKHPTIGMFKDQLKPESSVEELLLILTNADEYTDL 1867
Query: 387 KVRDEELHELDNLTQECCE-IPIRGGS---ENVHGKVNILLQTLLSRGRVNSFSLVSDLE 442
VR H D + E + +PI ++ H K ++LLQ S + +D +
Sbjct: 1868 PVR----HNEDQMNSELAKHLPIEVNPHSFDSSHTKTHLLLQAHFSHAILPCPDYATDTK 1923
Query: 443 YVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPL------------- 489
V IRI +A+ ++T H + A M +W H++ L
Sbjct: 1924 TVLDQAIRICQAMLDVTAHHGWLVAALNITNLVQMVVQGRWIHDSSLLTVPNIEVQHLYL 1983
Query: 490 -----RQIKLVTNRGYQSPI-LKPDILNKIEQRGLTVEDL--REMPAKEIS----YMLRD 537
+Q + + GYQ PI P+++ E + + E+ IS ++ R
Sbjct: 1984 FQKWSQQKRKSVHGGYQGPIECLPELMAACEGKEDVFASIVDSELQTAHISQAWNFLSRL 2043
Query: 538 P--HVGDKVKQCAWE----------IPLLEIES-------KLLPITRTVLKIHLTIKANF 578
P +V +K C W+ +P L ++ KL VL+IHL +
Sbjct: 2044 PILNVSLSIKGC-WDDPAQPQNEVPVPCLTADTRDNKRWIKLHADQEYVLQIHLQ-RTQM 2101
Query: 579 SWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLI-----MTIPLSD 633
+ K S P + V+D + F+ E + KK++I + +++
Sbjct: 2102 GYQGKQDSKAVAPRFPKVKD-EGWFLILGE---VDKKELIALKRTGYVRNRNTVSVAFYT 2157
Query: 634 P-LPNQ--YLIRAMSDRYLGSVVQHSM 657
P P + Y + MSD YLG Q+ +
Sbjct: 2158 PETPGKCIYTLYLMSDSYLGMDQQYDI 2184
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 68/88 (77%), Gaps = 3/88 (3%)
Query: 12 IIDEVHLLHGDRGPV-IEALVA--RTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLL 68
+ +EV + H + P+ IE + + L +IGQ FKG+K LNRIQS+V++TAY+TNEN+L
Sbjct: 446 MYEEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLAFKGMKRLNRIQSIVFETAYNTNENML 505
Query: 69 ICAPTGAGKTNVAMLTIAHQIKQHISQG 96
ICAPTGAGKTN+AMLT+ H+I+QH+ G
Sbjct: 506 ICAPTGAGKTNIAMLTVLHEIRQHVQHG 533
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 44/55 (80%), Gaps = 5/55 (9%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
DVAL++LVKLLI+DEVHLLH DRGPV+E++VARTLRQ+ + +S+ RI L
Sbjct: 607 DVALSQLVKLLILDEVHLLHEDRGPVLESIVARTLRQV-----ESTQSMIRILGL 656
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 49 LNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
L + +SLV + + + +L+C T A N+ AH + + +GT++Y AK G +V
Sbjct: 796 LRQDRSLVENLFSNGHIKVLVCTATLAWGVNLP----AHAV---VIKGTQIYAAKRGSFV 848
Query: 109 HIGILDVLQIFGRAGRPQYN 128
+GILDV+QIFGRAGRPQ++
Sbjct: 849 DLGILDVMQIFGRAGRPQFD 868
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYN 128
I +GTE Y+ K YV I DVLQ+ GRAGRPQ++
Sbjct: 1670 IVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFD 1705
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 10 LLIIDEVHLLHGDRGPV------IEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHT 63
+ II+ HL+ +R P ++ L L EV N IQ+ ++ T YHT
Sbjct: 1291 VCIINFQHLILPERHPPHTELLDLQPLPVTALGHPEYEVLYKFTHFNPIQTQIFHTLYHT 1350
Query: 64 NENLLICAPTGAGKTNVAMLTI 85
+ N+L+ APTG+GKT A L I
Sbjct: 1351 DCNVLLGAPTGSGKTVAAELAI 1372
Score = 41.2 bits (95), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%), Gaps = 4/34 (11%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE----HMTKG 156
++++DLGRTAS+YYIK+N IE F E H T+G
Sbjct: 985 FSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1018
Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V +LIIDE+HLL +RGPV+E +V+RT
Sbjct: 1456 VSILIIDEIHLLGDERGPVLEVIVSRT 1482
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 1016 bits (2626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/842 (57%), Positives = 619/842 (73%), Gaps = 43/842 (5%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGT++Y AK G +V +GILDV+QIFGRAGRPQ++ G IIT H+KL+HYLSLLT Q
Sbjct: 824 IIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQ 883
Query: 213 IPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNI 272
PIES F+ +LA DNLNAE+ALGT+ N+
Sbjct: 884 NPIESQFLESLA---------------------------------DNLNAEIALGTVTNV 910
Query: 273 DEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFN 332
+EAV+W+SY+YL+VRMR NP YGIS+ DP L +HR L+ + LDKA MIRF
Sbjct: 911 EEAVKWISYTYLYVRMRANPLVYGISHKAYQIDPTLAKHREQLVIEVGRKLDKARMIRFE 970
Query: 333 MRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEE 392
RT + TDLGRTAS+YYIK+N IE F E + I +++S+A EF+Q+KVR+EE
Sbjct: 971 ERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTESDIFAIVSKAEEFDQIKVREEE 1030
Query: 393 LHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRII 452
+ ELD L CE+ GG EN +GK+NILLQT +SRG V+SFSL+SD YV QN RI+
Sbjct: 1031 IEELDTLLSNFCELSAPGGVENSYGKINILLQTYISRGEVDSFSLISDSAYVAQNAARIV 1090
Query: 453 RALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNK 512
RALFEI L + M R L + + + + W +PLRQ +L P IL +
Sbjct: 1091 RALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQFS----------VLPPHILTR 1140
Query: 513 IEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHL 572
+E++ LTV+ L++M EI ++L ++G KVKQC +IP + +E+ + PITRTVL++ L
Sbjct: 1141 LEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVTL 1200
Query: 573 TIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLS 632
+I +FSWND+ T EP+WIWVEDP +D IYHSEYFL+ KKQVI+K + L+ TIP+
Sbjct: 1201 SISPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLLVFTIPIF 1260
Query: 633 DPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYES 692
+PLP+QY IRA+SDR+LG+ ++F+HLI+PE HPPHT LL+LQPLPV+AL YE+
Sbjct: 1261 EPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGCEAYEA 1320
Query: 693 LYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752
LY FSHFNP+QTQIFH LYHTD NVLLGAPTGSGKT+AAE+ FRVF + P +K VYIAP
Sbjct: 1321 LYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAP 1380
Query: 753 LKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQN 812
LKALV+ER+ DWKV+ E +L KKV+ELTGDVTPD+++I+ A +IVTTPEKWDGVSRSWQN
Sbjct: 1381 LKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQN 1440
Query: 813 RNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLA 872
RNYV+ V ++IIDEIHLLGE+RGPVLEVIVSR NFISS+T++ VR+VGLSTALANA+DLA
Sbjct: 1441 RNYVKQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLA 1500
Query: 873 TWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMI 932
WLNI + G++NFRPSVRPVPLEVHI GFPG+ YCPRMA MNKP + AI+ HSP KPV+I
Sbjct: 1501 DWLNIRQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPTFQAIRSHSPAKPVLI 1560
Query: 933 FVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHH 992
FVSSRRQTRLTA++LI LA E +PK W++ + EM+NI+ I+DSNLKLT+AFGIG HH
Sbjct: 1561 FVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIGTIRDSNLKLTLAFGIGMHH 1620
Query: 993 AA 994
A
Sbjct: 1621 AG 1622
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/355 (33%), Positives = 176/355 (49%), Gaps = 29/355 (8%)
Query: 663 IVPELHPPHTNLLELQPLPVSALQQPQY---------ESLYKFSHFNPIQTQIFHCLYHT 713
I E+ P+T +P+P+ ++P Y + N IQ+ +F Y+T
Sbjct: 437 IYEEVKIPYT-----EPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIVFETAYNT 491
Query: 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQ--------CPEAKVVYIAPLKALVKERVADWK 765
+ N+L+ APTG+GKT A +T +Q E K+VY+AP+KAL E +
Sbjct: 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFS 551
Query: 766 VKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR-SWQNRNYVQSVALIII 824
+ E L V ELTGD+ I ++VTTPEKWD V+R S + Q V L+I+
Sbjct: 552 KRLEP-LGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLIL 610
Query: 825 DEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ-GMY 883
DE+HLL EDRGPVLE IV+R T+ +R++GLS L N D+AT+L++ G++
Sbjct: 611 DEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLF 670
Query: 884 NFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAI-KQHSPEKPVMIFVSSRRQTRL 942
F RPVPL G ++ M++ Y ++ KQ VM+FV +R T
Sbjct: 671 FFDGRFRPVPLGQTFLGIKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVR 730
Query: 943 TAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDS-NLKLTIAFGIGF--HHAA 994
TA+ LI ++ T E + ++ S N ++ F GF HHA
Sbjct: 731 TAMSLIERAKNNGQICYFLPTQGPEYGHAEKQVQKSRNRQVRELFPDGFSIHHAG 785
Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 164/352 (46%), Gaps = 40/352 (11%)
Query: 149 FTEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
F H+ KGTE Y+ K YV I DVLQ+ GRAGRPQ++ G A I+ K + Y
Sbjct: 1655 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYK 1714
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVAL 266
L P+ES+ LG L+D+LNAE+A
Sbjct: 1715 KFLYEPFPVESSL-------------LGV--------------------LSDHLNAEIAG 1741
Query: 267 GTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKA 326
GTI + +A+ +++++Y R+ +NP Y +S +V+ D + + + L+E + L+ +
Sbjct: 1742 GTITSKQDAMDYITWTYFFRRLIMNPSYYNLS--DVSHD-SVNKFLSNLVEKSLVELEHS 1798
Query: 327 HMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQL 386
+ I R + GR AS YY+KH +++F E + +LS++S A E+ L
Sbjct: 1799 YCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKERLKPECGTEELLSILSDAEEYTDL 1858
Query: 387 KVRDEELHELDNLTQECCEIPIRGGS-ENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVN 445
VR E H +++ +C + S ++ H K ++LLQ LSR + +D + V
Sbjct: 1859 PVRHNEDH-MNSELAKCLPLESNPHSFDSPHTKAHLLLQAHLSRTMLPCPDYDTDTKTVL 1917
Query: 446 QNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTN 497
+R+ +A+ ++ H+ + M +W ++ L I + N
Sbjct: 1918 DQALRVCQAMLDVAAHQGWLVTVLNITSLVQMVIQGRWLKDSSLLTIPHIEN 1969
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 58/74 (78%)
Query: 35 LRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHIS 94
L +IGQ FKG++ LNRIQS+V++TAY+TNEN+LICAPTGAGKTN+AMLT+ H+I+QH
Sbjct: 463 LDEIGQLAFKGMRRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQ 522
Query: 95 QGTEMYNAKHGCYV 108
QG N YV
Sbjct: 523 QGVIKKNEFKIVYV 536
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 44/55 (80%), Gaps = 5/55 (9%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
DVAL+++VKLLI+DEVHLLH DRGPV+E++VARTLRQ+ + +S+ RI L
Sbjct: 598 DVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQV-----ESTQSMIRILGL 647
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 7/62 (11%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+L+C T A N+ AH + I +GT++Y AK G +V +GILDV+QIFGRAGRPQ
Sbjct: 805 VLVCTATLAWGVNLP----AHAV---IIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQ 857
Query: 127 YN 128
++
Sbjct: 858 FD 859
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYN 128
I +GTE Y+ K YV I DVLQ+ GRAGRPQ++
Sbjct: 1661 IIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFD 1696
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 10 LLIIDEVHLLHGDRGPV------IEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHT 63
+ II+ HL+ +R P ++ L L E N +Q+ ++ T YHT
Sbjct: 1282 VCIINFQHLILPERHPPHTELLDLQPLPVTALGCEAYEALYNFSHFNPVQTQIFHTLYHT 1341
Query: 64 NENLLICAPTGAGKTNVAMLTI 85
+ N+L+ APTG+GKT A L I
Sbjct: 1342 DCNVLLGAPTGSGKTVAAELAI 1363
Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V +LIIDE+HLL +RGPV+E +V+RT
Sbjct: 1447 VTILIIDEIHLLGEERGPVLEVIVSRT 1473
Score = 40.0 bits (92), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE 151
++++DLGRTAS+YYIK+N IE F E
Sbjct: 976 FSSTDLGRTASHYYIKYNTIETFNE 1000
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 1012 bits (2616), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/840 (57%), Positives = 615/840 (73%), Gaps = 43/840 (5%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y AK G +V +GILDV+QIFGRAGRPQ++ G IIT H+KL+HYLSLLT Q P
Sbjct: 827 KGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNP 886
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDE 274
IES F+ +LADNLNAE+ALGT+ N++EAVR
Sbjct: 887 IESQFLESLADNLNAEIALGTVTNVEEAVR------------------------------ 916
Query: 275 AVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMR 334
W+SY+YL+VRMR NP YGIS+ DP L +HR L+ Q LDKA MIRF R
Sbjct: 917 ---WMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEER 973
Query: 335 TRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELH 394
T + TDLGRTAS++YIK+N IE F E + I +++S+A EF+Q+KVR+EE+
Sbjct: 974 TGYFSSTDLGRTASHFYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIE 1033
Query: 395 ELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRA 454
ELD L CE+ GG EN +GK+NILLQT +SRG ++SFSL+SD YV QN RI+RA
Sbjct: 1034 ELDALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRA 1093
Query: 455 LFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIE 514
LFEI L + M R L + + + + W +PLRQ +L P IL ++E
Sbjct: 1094 LFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFS----------VLPPHILTRLE 1143
Query: 515 QRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHLTI 574
++ LTV+ L++M EI ++L ++G KVKQC +IP + +E+ + PITRTVL++ L I
Sbjct: 1144 EKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVSLNI 1203
Query: 575 KANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDP 634
+FSWND+ T EP+WIWVEDP +D IYHSEYFL KKQVI K + L+ TIP+ +P
Sbjct: 1204 HPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLLVFTIPIFEP 1263
Query: 635 LPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLY 694
LP+QY IRA+SDR+LG+ ++F+HLI+PE HPPHT LL+LQPLP++AL YE+LY
Sbjct: 1264 LPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY 1323
Query: 695 KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLK 754
FSHFNP+QTQIFH LYHTD NVLLGAPTGSGKT+AAE+ FRVF + P +K VYIAPLK
Sbjct: 1324 NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLK 1383
Query: 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRN 814
ALV+ER+ DWK++ E +L KKV+ELTGDVTPD+++I+ A +IVTTPEKWDGVSRSWQNR+
Sbjct: 1384 ALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRS 1443
Query: 815 YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATW 874
YVQ V ++IIDEIHLLGE+RGPVLEVIVSR NFISS+T++ VR+VGLSTALANA+DLA W
Sbjct: 1444 YVQQVNILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADW 1503
Query: 875 LNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFV 934
LNI + G++NFRPSVRPVPLEVHI GFPG+ YCPRMA MNKP + AI+ HSP KPV+IFV
Sbjct: 1504 LNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSPAKPVLIFV 1563
Query: 935 SSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAA 994
SSRRQTRLTA++LI LA E +PK W++ + EMDNI+ ++DSNLKLT+AFGIG HHA
Sbjct: 1564 SSRRQTRLTALELIAFLATEEDPKQWLNMDEQEMDNIIGTVRDSNLKLTLAFGIGMHHAG 1623
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 171/340 (50%), Gaps = 24/340 (7%)
Query: 678 QPLPVSALQQPQY---------ESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKT 728
+P+PV ++P Y + N IQ+ +F Y+T+ N+L+ APTG+GKT
Sbjct: 448 EPMPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKT 507
Query: 729 IAAEITCFRVFKQ--------CPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELT 780
A +T +Q E K+VY+AP+KAL E + + E L V ELT
Sbjct: 508 NIAMLTILHEIRQHFHQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRLEP-LGIVVKELT 566
Query: 781 GDVTPDIQAISSASVIVTTPEKWDGVSR-SWQNRNYVQSVALIIIDEIHLLGEDRGPVLE 839
GD+ I ++VTTPEKWD V+R S + Q V L+I+DE+HLL EDRGPVLE
Sbjct: 567 GDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLE 626
Query: 840 VIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ-GMYNFRPSVRPVPLEVHI 898
IV+R T+ +R++GLS L N D+AT+L++ G++ F RPVPL
Sbjct: 627 SIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTF 686
Query: 899 SGFPGKQYCPRMAKMNKPIYTAI-KQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNP 957
G ++ M++ Y ++ KQ VM+FV +R T TA+ LI
Sbjct: 687 LGIKSTNKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQI 746
Query: 958 KMWVHTSDAEMDNIVDNIKDS-NLKLTIAFGIGF--HHAA 994
++ T E + + ++ S N ++ F GF HHA
Sbjct: 747 SCFLPTEGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAG 786
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 150/313 (47%), Gaps = 40/313 (12%)
Query: 149 FTEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
F H+ KGTE Y+ K YV I DVLQ+ GRAGRPQ++ G A I+ K + Y
Sbjct: 1656 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYK 1715
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVAL 266
L P+ES+ LG L+D+LNAE+A
Sbjct: 1716 KFLYEPFPVESSL-------------LGV--------------------LSDHLNAEIAG 1742
Query: 267 GTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKA 326
GTI + +A+ +++++Y R+ +NP Y S +V+ D + + + LI + L+ +
Sbjct: 1743 GTITSKQDAMDYITWTYFFRRLIMNPSYY--SLGDVSQD-SINKFLSHLIGQSLVELELS 1799
Query: 327 HMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQL 386
H I R + GR AS YY+KH +++F + + +LS++S A E+ L
Sbjct: 1800 HCIEVGEDNRTIEPLTCGRIASYYYLKHKTVKMFKDRLKPECSTEELLSILSDAEEYTDL 1859
Query: 387 KVRDEELHELDNLTQECCEIPIRGGS-ENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVN 445
VR E H + L + C I + S ++ H K ++LLQ LSR + +D + V
Sbjct: 1860 PVRHNEDHTNNELAK-CLPIELNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVL 1918
Query: 446 QNVIRIIRALFEI 458
+R+ +A+ ++
Sbjct: 1919 DQALRVCQAMLDV 1931
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Query: 12 IIDEVHLLHGDRGPV---IEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLL 68
+ +EV + +G+ PV + + + L ++GQ FKG+K LNRIQS+V++TAY+TNEN+L
Sbjct: 438 LYEEVRIPYGEPMPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNTNENML 497
Query: 69 ICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
ICAPTGAGKTN+AMLTI H+I+QH QG N YV
Sbjct: 498 ICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYV 537
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 44/55 (80%), Gaps = 5/55 (9%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
DVAL+++VKLLI+DEVHLLH DRGPV+E++VARTLRQ+ + +S+ RI L
Sbjct: 599 DVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQV-----ESTQSMIRILGL 648
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 7/62 (11%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+L+C T A N+ AH + + +GT++Y AK G +V +GILDV+QIFGRAGRPQ
Sbjct: 806 VLVCTATLAWGVNLP----AHAV---VIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQ 858
Query: 127 YN 128
++
Sbjct: 859 FD 860
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYN 128
I +GTE Y+ K YV I DVLQ+ GRAGRPQ++
Sbjct: 1662 IIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFD 1697
Score = 42.4 bits (98), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 10 LLIIDEVHLLHGDRGPV------IEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHT 63
+ II+ HL+ +R P ++ L L E N +Q+ ++ T YHT
Sbjct: 1283 VCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHT 1342
Query: 64 NENLLICAPTGAGKTNVAMLTI 85
+ N+L+ APTG+GKT A L I
Sbjct: 1343 DCNVLLGAPTGSGKTVAAELAI 1364
Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V +LIIDE+HLL +RGPV+E +V+RT
Sbjct: 1448 VNILIIDEIHLLGEERGPVLEVIVSRT 1474
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%), Gaps = 4/34 (11%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE----HMTKG 156
++++DLGRTAS++YIK+N IE F E H T+G
Sbjct: 977 FSSTDLGRTASHFYIKYNTIETFNELFDAHKTEG 1010
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/842 (57%), Positives = 619/842 (73%), Gaps = 43/842 (5%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGT++Y AK G +V +GILDV+QIFGRAGRPQ++ G IIT H+KL+HYL+LLT +
Sbjct: 824 IIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQR 883
Query: 213 IPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNI 272
PIES F+ +LADNLNAE+ALGT+ N++EAV
Sbjct: 884 NPIESQFLESLADNLNAEIALGTVTNVEEAV----------------------------- 914
Query: 273 DEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFN 332
+W+SY+YL+VRMR NP YGIS+ DP L +HR L+ + LDKA MIRF
Sbjct: 915 ----KWISYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLVIEVGRKLDKAQMIRFE 970
Query: 333 MRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEE 392
RT + TDLGRTAS+YYIK+N IE F E + I +++S+A EF+Q+KVR+EE
Sbjct: 971 ERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEE 1030
Query: 393 LHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRII 452
+ ELD L CE+ GG EN +GK+NILLQT +SRG ++SFSL+SD YV QN RI+
Sbjct: 1031 IEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIV 1090
Query: 453 RALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNK 512
RALFEI L + M R L + + + + W +PLRQ IL P IL +
Sbjct: 1091 RALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFS----------ILPPHILTR 1140
Query: 513 IEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHL 572
+E++ LTV+ L++M EI ++L ++G KVKQC +IP + +E+ + PITRTVL++ L
Sbjct: 1141 LEEKKLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEASIQPITRTVLRVTL 1200
Query: 573 TIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLS 632
+I A+F+WND+ T EP+WIWVEDP +D IYHSEYFL KKQVI+K + L+ TIP+
Sbjct: 1201 SIYADFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVISKEAQLLVFTIPIF 1260
Query: 633 DPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYES 692
+PLP+QY IRA+SDR+LG+ ++F+HLI+PE HPPHT LL+LQPLP++AL YE+
Sbjct: 1261 EPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEA 1320
Query: 693 LYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752
LY FSHFNP+QTQIFH LYHTD NVLLGAPTGSGKT+AAE+ FRVF + P +K VYIAP
Sbjct: 1321 LYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAP 1380
Query: 753 LKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQN 812
LKALV+ER+ DWKV+ E +L KKV+ELTGDVTPD+++I+ A +IVTTPEKWDGVSRSWQN
Sbjct: 1381 LKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQN 1440
Query: 813 RNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLA 872
RNYVQ V ++IIDEIHLLGE+RGPVLEVIVSR NFISS+T++ VR+VGLSTALANA+DLA
Sbjct: 1441 RNYVQQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLA 1500
Query: 873 TWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMI 932
WLNI + G++NFRPSVRPVPLEVHI GFPG+ YCPRMA MNKP + AI+ HSP KPV+I
Sbjct: 1501 DWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSPAKPVLI 1560
Query: 933 FVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHH 992
FVSSRRQTRLTA++LI LA E +PK W++ + EM+NI+ ++DSNLKLT+AFGIG HH
Sbjct: 1561 FVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIATVRDSNLKLTLAFGIGMHH 1620
Query: 993 AA 994
A
Sbjct: 1621 AG 1622
Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 153/291 (52%), Gaps = 21/291 (7%)
Query: 678 QPLPVSALQQPQY---------ESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKT 728
+P+P+S ++P Y + N IQ+ +F Y+T+ N+L+ APTG+GKT
Sbjct: 447 EPMPLSFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKT 506
Query: 729 IAAEITCFRVFKQ--------CPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELT 780
A +T +Q E K+VY+AP+KAL E + + E L V ELT
Sbjct: 507 NIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTDYFSRRLEP-LGIIVKELT 565
Query: 781 GDVTPDIQAISSASVIVTTPEKWDGVSR-SWQNRNYVQSVALIIIDEIHLLGEDRGPVLE 839
GD+ I ++VTTPEKWD V+R S + Q V L+I+DE+HLL EDRGPVLE
Sbjct: 566 GDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLILDEVHLLHEDRGPVLE 625
Query: 840 VIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ-GMYNFRPSVRPVPLEVHI 898
IV+R T+ +R++GLS L N D+AT+L++ G++ F RPVPL
Sbjct: 626 SIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQTF 685
Query: 899 SGFPGKQYCPRMAKMNKPIY-TAIKQHSPEKPVMIFVSSRRQTRLTAIDLI 948
G ++ M++ Y +KQ VM+FV +R T TA+ LI
Sbjct: 686 LGIKCANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVHARNATVRTAMSLI 736
Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 162/355 (45%), Gaps = 46/355 (12%)
Query: 149 FTEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
F H+ KGTE Y+ K YV I DVLQ+ GRAGRPQ++ G A I+ K + Y
Sbjct: 1655 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYK 1714
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVAL 266
L P+ES+ LG L+D+LNAE+A
Sbjct: 1715 KFLYEPFPVESSL-------------LGV--------------------LSDHLNAEIAG 1741
Query: 267 GTIGNIDEAVRWLSYSYLHVRMRINPREYG---ISYDEVATDPDLIQHRTTLIENAAQIL 323
GTI + +A+ +++++Y R+ +NP Y +S+D V + H LIE + L
Sbjct: 1742 GTITSKQDALDYITWTYFFRRLIMNPSYYNLGDVSHDSVNK---FLSH---LIEKSLIEL 1795
Query: 324 DKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEF 383
+ ++ I R + GR AS YY+KH +++F + + +LS++S A E+
Sbjct: 1796 ELSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKDRLKPECSTEELLSILSDAEEY 1855
Query: 384 EQLKVRDEELHELDNLTQECCEIPIRGGS-ENVHGKVNILLQTLLSRGRVNSFSLVSDLE 442
L VR E H +++ +C I S ++ H K ++LLQ LSR + +D +
Sbjct: 1856 TDLPVRHNEDH-MNSELAKCLPIESNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTK 1914
Query: 443 YVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTN 497
V +R+ +A+ ++ ++ + M +W ++ L + + N
Sbjct: 1915 TVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWLKDSSLLTLPNIEN 1969
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 58/74 (78%)
Query: 35 LRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHIS 94
L +IGQ FKG+K LNRIQS+V++TAY+TNEN+LICAPTGAGKTN+AMLT+ H+I+QH
Sbjct: 463 LDEIGQLAFKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQ 522
Query: 95 QGTEMYNAKHGCYV 108
QG N YV
Sbjct: 523 QGVIKKNEFKIVYV 536
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 44/55 (80%), Gaps = 5/55 (9%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
DVAL+++V+LLI+DEVHLLH DRGPV+E++VARTLRQ+ + +S+ RI L
Sbjct: 598 DVALSQIVRLLILDEVHLLHEDRGPVLESIVARTLRQV-----ESTQSMIRILGL 647
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 7/62 (11%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+L+C T A N+ AH + I +GT++Y AK G +V +GILDV+QIFGRAGRPQ
Sbjct: 805 VLVCTATLAWGVNLP----AHAV---IIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQ 857
Query: 127 YN 128
++
Sbjct: 858 FD 859
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYN 128
I +GTE Y+ K YV I DVLQ+ GRAGRPQ++
Sbjct: 1661 IIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFD 1696
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 10 LLIIDEVHLLHGDRGPV------IEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHT 63
+ II+ HL+ +R P ++ L L E N +Q+ ++ T YHT
Sbjct: 1282 VCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHT 1341
Query: 64 NENLLICAPTGAGKTNVAMLTI 85
+ N+L+ APTG+GKT A L I
Sbjct: 1342 DCNVLLGAPTGSGKTVAAELAI 1363
Score = 41.2 bits (95), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%), Gaps = 4/34 (11%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE----HMTKG 156
++++DLGRTAS+YYIK+N IE F E H T+G
Sbjct: 976 FSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1009
Score = 40.0 bits (92), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V +LIIDE+HLL +RGPV+E +V+RT
Sbjct: 1447 VTILIIDEIHLLGEERGPVLEVIVSRT 1473
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 976 bits (2522), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/842 (55%), Positives = 605/842 (71%), Gaps = 44/842 (5%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGT++Y AK G +V +GILDV+QIFGRAGRPQ++ G IIT H+KL+HYLSLLT Q
Sbjct: 825 IIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQ 884
Query: 213 IPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNI 272
PIES F+ +LA DNLNAE+ALGT+ N+
Sbjct: 885 NPIESQFLESLA---------------------------------DNLNAEIALGTVTNV 911
Query: 273 DEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFN 332
+EAV+W+SY+YL+VRMR NP YGIS+ DP L +HR L+ Q LDKA MIRF
Sbjct: 912 EEAVKWMSYTYLYVRMRANPLAYGISHKAYQMDPTLRKHREQLLIEVGQKLDKARMIRFE 971
Query: 333 MRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEE 392
RT + TDLGRTAS+YYIK+N IE F E + I +++S+A EF+Q+KVR+EE
Sbjct: 972 ERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEE 1031
Query: 393 LHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRII 452
+ ELD L CE+ GG EN +GK+NILLQT +SRG ++SFSL+SD YV QN RI+
Sbjct: 1032 IEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIV 1091
Query: 453 RALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNK 512
RALFEI L + M R L + + + + W +PLRQ +L P IL +
Sbjct: 1092 RALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFS----------VLPPHILTR 1141
Query: 513 IEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHL 572
+E++ LTV+ L++M EI ++L ++G KVKQC +IP + +E+ + PITRTVL++ L
Sbjct: 1142 LEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVSL 1201
Query: 573 TIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLS 632
I +FSWND+ T EP+WIWVEDP +D IYHSEYFL KKQVI K + L+ TIP+
Sbjct: 1202 NIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLLVFTIPIF 1261
Query: 633 DPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYES 692
+PLP+QY IRA+SDR+LG+ ++F+HLI+PE HPPHT LL+LQPLPV+AL YE+
Sbjct: 1262 EPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGCKAYEA 1321
Query: 693 LYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752
LY FSHFNP+QTQIFH LYHTD NVLLGAPTGSGKT+AAE+ FRVF + P +K VYIAP
Sbjct: 1322 LYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAP 1381
Query: 753 LKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQN 812
LKALV+ER+ DWK++ E +L KKV+ELTGDVTPD+++I+ A +IVTTPEKWDGVSRSWQN
Sbjct: 1382 LKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQN 1441
Query: 813 RNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLA 872
R+YVQ V ++IIDEIHLLGE+RGPVLEVIVSR NFISS+T++ VR+VGLSTALANA+DLA
Sbjct: 1442 RSYVQQVNILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLA 1501
Query: 873 TWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMI 932
WLNI + G++NFRPSVRPVPLEVHI GFPG+ YCPRMA MNKP + H P++P ++
Sbjct: 1502 DWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQESHTHCPDRPCLL 1561
Query: 933 FVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHH 992
+ R + +T ++LI LA E +PK W++ + EM+NI+ ++DSNLKLT+AFGIG HH
Sbjct: 1562 -LPERMLSSMTKLELIAFLATEEDPKQWLNMDEQEMENIIATVRDSNLKLTLAFGIGMHH 1620
Query: 993 AA 994
A
Sbjct: 1621 AG 1622
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 171/340 (50%), Gaps = 24/340 (7%)
Query: 678 QPLPVSALQQPQY---------ESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKT 728
+P+PV ++P Y + N IQ+ +F Y+T+ N+L+ APTG+GKT
Sbjct: 448 EPMPVGFEEKPVYIQDLDEVGQLAFKGMKRLNRIQSIVFDTAYNTNENMLICAPTGAGKT 507
Query: 729 IAAEITCFRVFKQ--------CPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELT 780
A +T +Q E K+VY+AP+KAL E + + E L V ELT
Sbjct: 508 NIAMLTVLHEIRQHFHQGVLKKNEFKIVYVAPMKALAAEMTNYFSKRLEP-LGIVVKELT 566
Query: 781 GDVTPDIQAISSASVIVTTPEKWDGVSR-SWQNRNYVQSVALIIIDEIHLLGEDRGPVLE 839
GD+ I ++VTTPEKWD V+R S + Q V L+I+DE+HLL EDRGPVLE
Sbjct: 567 GDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLE 626
Query: 840 VIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ-GMYNFRPSVRPVPLEVHI 898
IV+R T+ +R++GLS L N D+AT+L++ G++ F RPVPL
Sbjct: 627 SIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTF 686
Query: 899 SGFPGKQYCPRMAKMNKPIYTAI-KQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNP 957
G ++ M++ Y ++ KQ VM+FV +R T TA+ LI
Sbjct: 687 LGIKSANKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQI 746
Query: 958 KMWVHTSDAEMDNIVDNIKDS-NLKLTIAFGIGF--HHAA 994
++ T E + + ++ S N ++ F GF HHA
Sbjct: 747 SCFLPTQGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAG 786
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 166/368 (45%), Gaps = 46/368 (12%)
Query: 149 FTEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
F H+ KGTE Y+ K YV I DVLQ+ GRAGRPQ++ G A I+ K + Y
Sbjct: 1655 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYK 1714
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVAL 266
L P+ES+ LG L+D+LNAE+A
Sbjct: 1715 KFLYEPFPVESSL-------------LGV--------------------LSDHLNAEIAG 1741
Query: 267 GTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKA 326
GTI + +A+ +++++Y R+ +NP Y + +V+ D + + + LI + L+ +
Sbjct: 1742 GTITSKQDALDYITWTYFFRRLIMNPSYYNLG--DVSQDA-INKFLSHLIGQSLVELELS 1798
Query: 327 HMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQL 386
H I R + GR AS YY+KH +++F + + +LS++S A E+ L
Sbjct: 1799 HCIEVGEDNRSIEPLTCGRIASYYYLKHKTVKMFKDRLKPECSTEELLSILSDAEEYTDL 1858
Query: 387 KVRDEELHELDNLTQECCEIPIRGGS-ENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVN 445
VR E H + L + C I + S ++ H K ++LLQ LSR + +D + V
Sbjct: 1859 PVRHNEDHTNNELAK-CLPIELNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVL 1917
Query: 446 QNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTN------RG 499
+R+ +A+ ++ + + M +W ++ L I + R
Sbjct: 1918 DQALRVCQAMLDVAASQGWLVTTLNITHLIQMVIQGRWLKDSSLLTIPNIEQHHLHLFRK 1977
Query: 500 YQSPILKP 507
++ P+ P
Sbjct: 1978 WKPPVKGP 1985
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 58/74 (78%)
Query: 35 LRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHIS 94
L ++GQ FKG+K LNRIQS+V+DTAY+TNEN+LICAPTGAGKTN+AMLT+ H+I+QH
Sbjct: 464 LDEVGQLAFKGMKRLNRIQSIVFDTAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFH 523
Query: 95 QGTEMYNAKHGCYV 108
QG N YV
Sbjct: 524 QGVLKKNEFKIVYV 537
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 44/55 (80%), Gaps = 5/55 (9%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
DVAL+++VKLLI+DEVHLLH DRGPV+E++VARTLRQ+ + +S+ RI L
Sbjct: 599 DVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQV-----ESTQSMIRILGL 648
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 7/62 (11%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+L+C T A N+ AH + I +GT++Y AK G +V +GILDV+QIFGRAGRPQ
Sbjct: 806 VLVCTATLAWGVNLP----AHAV---IIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQ 858
Query: 127 YN 128
++
Sbjct: 859 FD 860
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYN 128
I +GTE Y+ K YV I DVLQ+ GRAGRPQ++
Sbjct: 1661 IIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFD 1696
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 10 LLIIDEVHLLHGDRGPV------IEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHT 63
+ II+ HL+ +R P ++ L L E N +Q+ ++ T YHT
Sbjct: 1283 VCIINFQHLILPERHPPHTELLDLQPLPVTALGCKAYEALYNFSHFNPVQTQIFHTLYHT 1342
Query: 64 NENLLICAPTGAGKTNVAMLTI 85
+ N+L+ APTG+GKT A L I
Sbjct: 1343 DCNVLLGAPTGSGKTVAAELAI 1364
Score = 41.2 bits (95), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%), Gaps = 4/34 (11%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE----HMTKG 156
++++DLGRTAS+YYIK+N IE F E H T+G
Sbjct: 977 FSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1010
Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V +LIIDE+HLL +RGPV+E +V+RT
Sbjct: 1448 VNILIIDEIHLLGEERGPVLEVIVSRT 1474
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/840 (54%), Positives = 581/840 (69%), Gaps = 79/840 (9%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT +Y+AK G V +GILDV+QIFGRAGRPQ++ G TIIT H+KL+HYL+LLT Q P
Sbjct: 424 KGTNIYDAKRGTLVDLGILDVMQIFGRAGRPQFDKYGEGTIITTHDKLSHYLTLLTQQNP 483
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDE 274
IES F +LAD NLNAE+ALGT+ N+DE
Sbjct: 484 IESQFQQSLAD---------------------------------NLNAEIALGTVTNVDE 510
Query: 275 AVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMR 334
AVRWLSY+YL+VRMR NP YGI++ DP L +R L+ + + LDKA MIRF+ R
Sbjct: 511 AVRWLSYTYLYVRMRANPLAYGINHKAYQMDPQLELYRKELVVESGRKLDKARMIRFDER 570
Query: 335 TRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELH 394
T A TDLGRTAS++YIK+N IE F E + +LS++S+A EFEQ+KVR +E
Sbjct: 571 TGYFASTDLGRTASHFYIKYNTIESFNELFNAQNTEADVLSIVSKAEEFEQIKVRVQE-- 628
Query: 395 ELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRA 454
E+ GK ++ Q L N+ RI+RA
Sbjct: 629 ------------------EDADGKSSV--QILCGSHHTNA--------------ARIMRA 654
Query: 455 LFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIE 514
LFE+ L + M R L + + + W PLRQ L L ++E
Sbjct: 655 LFEMALRKRWPAMTYRLLNLCKVMDKRLWGWAHPLRQFN----------TLPASALARME 704
Query: 515 QRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHLTI 574
+ LT++ LR+M EI +ML ++G KVKQC +IP + +ES + PITRTVL++ L+I
Sbjct: 705 DKNLTIDKLRDMGKDEIGHMLHHVNIGLKVKQCVHQIPAILLESSIQPITRTVLRVRLSI 764
Query: 575 KANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDP 634
+F WND+ + EP+W+WVEDP +D IYHSEYFLL KKQV++ + ++ TIP+ +P
Sbjct: 765 TPDFRWNDQVHGSVGEPWWLWVEDPINDHIYHSEYFLLQKKQVVSGEPQQVVFTIPIFEP 824
Query: 635 LPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLY 694
+P+QY IRA+SDR+LGS ++F+HLI+PE HPPHT LL+LQPLP++AL +YESLY
Sbjct: 825 MPSQYYIRAVSDRWLGSEAVCIINFQHLILPERHPPHTELLDLQPLPITALGNREYESLY 884
Query: 695 KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLK 754
KF+H+NPIQTQIFH LYHTD NVLLGAPTGSGKTIAAE+ FRVF P +KVVYIAPLK
Sbjct: 885 KFTHYNPIQTQIFHTLYHTDTNVLLGAPTGSGKTIAAEMAIFRVFNMYPTSKVVYIAPLK 944
Query: 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRN 814
ALV+ER+ DWK++ E +L +KVVELTGD TPD++AI+ A +IVTTPEKWDGVSRSWQNR+
Sbjct: 945 ALVRERIEDWKIRIEEKLGRKVVELTGDNTPDMRAIAQADLIVTTPEKWDGVSRSWQNRS 1004
Query: 815 YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATW 874
YVQ VA++IIDEIHLLGEDRGPVLEVIVSR NFISS+T + VR+VGLSTALANA+DLA W
Sbjct: 1005 YVQKVAILIIDEIHLLGEDRGPVLEVIVSRTNFISSHTSKTVRVVGLSTALANARDLADW 1064
Query: 875 LNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFV 934
L I + G++NFRPSVRPVPLEVHI GFPG+ YCPRMA MNKP++ AI+ HSP KPV+IFV
Sbjct: 1065 LGIGQVGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMATMNKPVFQAIRTHSPAKPVLIFV 1124
Query: 935 SSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAA 994
SSRRQTRLTA+DLI LA E +PK W+H + EM +I+ I++SNLKLT+AFGIG HHA
Sbjct: 1125 SSRRQTRLTALDLIAFLATEDDPKQWLHQDEREMTDIIATIRESNLKLTLAFGIGMHHAG 1184
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 157/311 (50%), Gaps = 16/311 (5%)
Query: 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ---------CPEAKVVY 749
N IQ+ +F Y+T+ N+L+ APTG+GKT A +T +Q + K+VY
Sbjct: 74 LNRIQSIVFETAYNTNENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVY 133
Query: 750 IAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR- 808
+AP+KAL E + + E L V ELTGD+ I ++VTTPEKWD V+R
Sbjct: 134 VAPMKALAAEMTNYFSKRLEP-LGIAVKELTGDMQLTKGEILRTQMLVTTPEKWDVVTRK 192
Query: 809 SWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA 868
S + Q V L+I+DE+HLL EDRGPVLE +V+R T+ +R++GLS L N
Sbjct: 193 SVGDVALSQVVRLLILDEVHLLHEDRGPVLESLVARTLRQVESTQSMIRILGLSATLPNY 252
Query: 869 KDLATWLNITKQ-GMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAI-KQHSP 926
D+AT+L++ G++ F RPVPL G ++ M + Y + KQ
Sbjct: 253 LDVATFLHVNPFIGLFYFDSRFRPVPLGQSFVGIKTTNKVQQLHDMEEVCYEKVLKQIKA 312
Query: 927 EKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDS-NLKLTIA 985
VM+FV +R T TA+ LI + + A+ I+ S N ++
Sbjct: 313 GHQVMVFVHARNSTVRTAMSLIEMAKNRGELSFFQVDQGADYGQCEKQIQRSRNKQMREM 372
Query: 986 F--GIGFHHAA 994
F G G HHA
Sbjct: 373 FPDGFGIHHAG 383
Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 59/69 (85%)
Query: 28 EALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAH 87
+A+ L +IGQ VFKG+K LNRIQS+V++TAY+TNENLLICAPTGAGKTN+AMLTI H
Sbjct: 53 KAVFVSELDEIGQLVFKGMKRLNRIQSIVFETAYNTNENLLICAPTGAGKTNIAMLTILH 112
Query: 88 QIKQHISQG 96
+I+QH+ G
Sbjct: 113 EIRQHLQPG 121
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 38/232 (16%)
Query: 149 FTEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
F H+ KGTE Y+ K YV I DVLQ+ GRAGRPQ++ G A I+ K + Y
Sbjct: 1217 FPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYK 1276
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVAL 266
L P+ES+ ++ L+D+LNAE+A G
Sbjct: 1277 KFLYEPFPVESSLLSVLSDHLNAEIAAG-------------------------------- 1304
Query: 267 GTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKA 326
T+ + +A+ +++++Y R+ +NP Y + D+++ + + ++ + L+E + + L+ +
Sbjct: 1305 -TVTSKQDAMDYITWTYFFRRLVMNPSYYNL--DDISHE-TINKYLSNLVERSLRDLECS 1360
Query: 327 HMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMIS 378
+ + + + GR +S YY+KH I +F E + L +L+++S
Sbjct: 1361 YCMEIQQDEQTIEPLTYGRISSYYYLKHQTIRMFKERLKPELPVHELLAILS 1412
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 44/55 (80%), Gaps = 5/55 (9%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
DVAL+++V+LLI+DEVHLLH DRGPV+E+LVARTLRQ+ + +S+ RI L
Sbjct: 196 DVALSQVVRLLILDEVHLLHEDRGPVLESLVARTLRQV-----ESTQSMIRILGL 245
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 66 NLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRP 125
+L+C T A N+ AH + I +GT +Y+AK G V +GILDV+QIFGRAGRP
Sbjct: 402 KVLVCTATLAWGVNLP----AHAV---IIKGTNIYDAKRGTLVDLGILDVMQIFGRAGRP 454
Query: 126 QYNTSDLG 133
Q++ G
Sbjct: 455 QFDKYGEG 462
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYN 128
I +GTE Y+ K YV I DVLQ+ GRAGRPQ++
Sbjct: 1223 IVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFD 1258
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V +LIIDE+HLL DRGPV+E +V+RT
Sbjct: 1009 VAILIIDEIHLLGEDRGPVLEVIVSRT 1035
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 50 NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
N IQ+ ++ T YHT+ N+L+ APTG+GKT A + I
Sbjct: 890 NPIQTQIFHTLYHTDTNVLLGAPTGSGKTIAAEMAI 925
Score = 37.4 bits (85), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE 151
+ ++DLGRTAS++YIK+N IE F E
Sbjct: 574 FASTDLGRTASHFYIKYNTIESFNE 598
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/843 (47%), Positives = 568/843 (67%), Gaps = 52/843 (6%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++YNAK+G ++ +GI DV+QIFGRAGRPQ++TSG ++T +KL+HYLSL+++ +P
Sbjct: 828 KGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMP 887
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDE 274
IES F+ NL D+LNAE+ LGT+ N++E
Sbjct: 888 IESKFITNLE---------------------------------DHLNAEIVLGTVSNVNE 914
Query: 275 AVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMR 334
AV WLSY+YL +RM NP YGI + + DP L + + +I AA+ L++ M RF+ +
Sbjct: 915 AVNWLSYTYLFIRMLQNPLVYGIPSSQRSKDPQLEEFKREIIIRAAKKLEQCKMTRFDEQ 974
Query: 335 TRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELH 394
+ +L +T+LGR AS+YYIKH IE F E + L +L+++S + EFE + +R+EE
Sbjct: 975 SENLGMTELGRIASHYYIKHPSIETFNEMLNDQLGQDQVLNILSNSSEFENITLREEEST 1034
Query: 395 ELDNLTQECC--EIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRII 452
ELD L + C E+ + + H KV LLQ SR ++ FSLVSD Y QN RI+
Sbjct: 1035 ELDKLAENQCYYELTVL----DSHSKVKCLLQAFFSRANIDGFSLVSDSNYTVQNSSRIL 1090
Query: 453 RALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNK 512
R LFEI+L + ++ L M + + W E+PLRQ K +L D + K
Sbjct: 1091 RGLFEISLKKGWCTVSKTILDLCKMVDHQLWHFESPLRQAK----------VLSLDTIRK 1140
Query: 513 IEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHL 572
IE+R T E + +M E+S++L + + ++ A + P L+ E ++ PIT +++I++
Sbjct: 1141 IEERDWTPERICDMEIGELSFVLGNQLIAKTTRKIAQQFPQLDFEIQVQPITANIIRINM 1200
Query: 573 TIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLS 632
T+ FSWNDK ++PFWIWV+D +S +I+HSEYF+L+KK +L IPL
Sbjct: 1201 TLIPMFSWNDKMHGD-SQPFWIWVQDNESQYIFHSEYFMLTKKIYNQTEPITLTCIIPLP 1259
Query: 633 DPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPEL-HPPHTNLLELQPLPVSALQQPQYE 691
+P+P+Q+ + +SDR+LGS +SF+HL++P+ +T LL+LQPLP AL+ +E
Sbjct: 1260 NPMPSQFFLHYISDRWLGSEGIREISFRHLVLPQQDRVVNTELLDLQPLPKEALKNKDFE 1319
Query: 692 SLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751
SL+KFSHFNPIQTQ+FH LY+T+NNVLLG+PTGSGKTI AE+ F+VF+ P KVVYIA
Sbjct: 1320 SLFKFSHFNPIQTQVFHTLYYTNNNVLLGSPTGSGKTICAELAMFKVFRDEPHMKVVYIA 1379
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQ 811
PLKALV+ER+ DWKVKF+ +L KK+VELTGD TP++ A+ +A ++ TTPEKWDG+SR+W+
Sbjct: 1380 PLKALVRERMNDWKVKFQEKLGKKLVELTGDYTPNMIALQNADIVTTTPEKWDGISRNWK 1439
Query: 812 NRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDL 871
NR+YV SV+L+IIDEIHL+GE RGP+LEVIVSR+ IS T N+R+VGLSTA+ANA DL
Sbjct: 1440 NRSYVTSVSLLIIDEIHLIGELRGPILEVIVSRMKLISKQTGVNIRVVGLSTAMANAIDL 1499
Query: 872 ATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVM 931
+ W+ I + G++NFRPS RPVP+EVHI GF GK YCPRM MNKP + AI +SP+KPV+
Sbjct: 1500 SEWMGIDRVGLFNFRPSCRPVPIEVHIQGFQGKNYCPRMQTMNKPSFAAIATYSPKKPVL 1559
Query: 932 IFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFH 991
IFVSSRRQTRLTA+DLI+ L + +P W+ +++ + +KD +L+ T++FGIG H
Sbjct: 1560 IFVSSRRQTRLTALDLISYLVVDNDPLQWIQKG-FDIEPTLARVKDQHLRHTLSFGIGMH 1618
Query: 992 HAA 994
HA
Sbjct: 1619 HAG 1621
Score = 160 bits (404), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 158/310 (50%), Gaps = 19/310 (6%)
Query: 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC---------PEAKVVY 749
N IQ+++F Y ++ N+L+ APTG+GKT A +T + K++Y
Sbjct: 483 LNRIQSRVFESAYKSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIY 542
Query: 750 IAPLKALVKERVADWKVKFEARLKKKVV---ELTGDVTPDIQAISSASVIVTTPEKWDGV 806
IAPLKAL E V KF LK + ELTGD+ + + +IVTTPEKWD +
Sbjct: 543 IAPLKALASEMVE----KFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVI 598
Query: 807 SRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866
+R + + V LIIIDEIHLL E+RGPVLE IV+R T+ +R+VGLS L
Sbjct: 599 TRKSSDVALTKLVRLIIIDEIHLLHEERGPVLECIVARTLRQVETTQEMIRIVGLSATLP 658
Query: 867 NAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMA-KMNKPIYTAIKQHS 925
N KD+A ++ G + F S RPVPL + G Q M MN+ Y +++
Sbjct: 659 NYKDVARFIRAPASGTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMNQLCYERLEKSL 718
Query: 926 PEK-PVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTI 984
E VMIFV SR+ T +A ++++ +A E + + + +K ++
Sbjct: 719 KEGHQVMIFVHSRKDTVKSA-EILSDMAKEKHFRFSNEEPSFGAKKEFEKVKSKEIRSLF 777
Query: 985 AFGIGFHHAA 994
GI HHA
Sbjct: 778 QHGISVHHAG 787
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 184/390 (47%), Gaps = 45/390 (11%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGTE ++ K YV + DVLQ+ GRAGRPQ++ G A ++ K Y L + P
Sbjct: 1662 KGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFYKKFLYDPFP 1721
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDE 274
+ES+ L D L+ D+LNAE+ GTI +
Sbjct: 1722 VESH----LKDFLH-----------------------------DHLNAEIVSGTIQSKQG 1748
Query: 275 AVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMR 334
A+ +L ++ R+ ++P YG+ + V + Q+ + L+++ L+++ I N
Sbjct: 1749 AINYLVNTFFFRRLVVSPSYYGLEDNSVEA---VNQYLSDLLDSTLADLEQSSCIEINEY 1805
Query: 335 TRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELH 394
+ ++ +G+ AS YY+ + ++ F++++ + D +L ++S A E+ + VR H
Sbjct: 1806 DEIIPMS-MGKIASFYYLNYKTVQNFSDNIKRDSDIKTLLRVLSDAAEYSEFPVR----H 1860
Query: 395 ELDNLTQECCE-IPIR-GGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRII 452
+ L QE E +PI+ G E+ H KV++LLQ R + +D + IRI+
Sbjct: 1861 NEEILNQELNENLPIKIGNYEDSHTKVHLLLQAHFQRCPLPITDFTTDTKSALDQGIRIL 1920
Query: 453 RALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNK 512
+A+ +++ A + ++ M +W +++ L + + N+ + + IL+
Sbjct: 1921 QAMIDVSFEYGYFATAIQVIRLLQMLVQGRWDYDSSLMTLPHI-NKDFADFLSSNLILSN 1979
Query: 513 IEQRGLTVEDLREMPAKEISYMLRDPHVGD 542
EQ + D+ ++P +I L + + D
Sbjct: 1980 GEQIS-NLSDMLKIPRDKIHLSLTNIGLSD 2008
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Query: 21 GDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNV 80
D +IE + ++ +I + F +K LNRIQS V+++AY +NEN+LI APTGAGKTN+
Sbjct: 457 ADNEKLIE--IGESIAEISRAAFGSIKKLNRIQSRVFESAYKSNENILISAPTGAGKTNI 514
Query: 81 AMLTIAHQIKQHIS 94
A+LTI H+I+ +I+
Sbjct: 515 ALLTILHEIESNIN 528
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 7/67 (10%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+L+C T A N+ T+ I +GT++YNAK+G ++ +GI DV+QIFGRAGRPQ
Sbjct: 807 VLVCTATLAWGVNLPAHTV-------IIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQ 859
Query: 127 YNTSDLG 133
++TS G
Sbjct: 860 FDTSGEG 866
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 36/38 (94%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
DVALT+LV+L+IIDE+HLLH +RGPV+E +VARTLRQ+
Sbjct: 604 DVALTKLVRLIIIDEIHLLHEERGPVLECIVARTLRQV 641
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 6 ELVKLLIIDEVHLLHGDRGPVIEALVARTLRQ-IGQEVFKGV----KSLNRIQSLVYDTA 60
+L+ L++D L +G IE +AR Q + + G+ LN + ++
Sbjct: 1574 DLISYLVVDNDPLQWIQKGFDIEPTLARVKDQHLRHTLSFGIGMHHAGLNDGDRTIVESL 1633
Query: 61 YHTNE-NLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIF 119
+ N+ +LI T A N+ AH + I +GTE ++ K YV + DVLQ+
Sbjct: 1634 FGENKIQILISTSTLAWGVNLP----AHLV---IIKGTEYFDGKTKRYVDFPLTDVLQMI 1686
Query: 120 GRAGRPQYN 128
GRAGRPQ++
Sbjct: 1687 GRAGRPQFD 1695
Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 49 LNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
N IQ+ V+ T Y+TN N+L+ +PTG+GKT A L +
Sbjct: 1327 FNPIQTQVFHTLYYTNNNVLLGSPTGSGKTICAELAM 1363
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVAR 33
V LLIIDE+HL+ RGP++E +V+R
Sbjct: 1447 VSLLIIDEIHLIGELRGPILEVIVSR 1472
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/846 (46%), Positives = 540/846 (63%), Gaps = 53/846 (6%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGT++Y+ + G +V +G+LDVLQIFGRAGRPQ+ +S A IIT H+KL+HY+S++T Q
Sbjct: 633 LIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQQ 692
Query: 213 IPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNI 272
PIES F L DN LNAEV+LGT+ NI
Sbjct: 693 SPIESRFTDRLVDN---------------------------------LNAEVSLGTVTNI 719
Query: 273 DEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFN 332
DEAV WL Y+YL++RMR NP YGI+YDE+ DP L R L+ AA L MI +N
Sbjct: 720 DEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSKRRELVSVAAGRLADNQMIVYN 779
Query: 333 MRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEE 392
+ L DLGR ASNYYI + + + + + I++++SQ EF Q+K R+ E
Sbjct: 780 KKNGYLIPKDLGRIASNYYINYQTVSTLNNLLKSKMSEADIIALLSQCSEFSQIKSRENE 839
Query: 393 LHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRII 452
EL++L + +R N GKVN++LQ+ +SR V F+L SD YV QN RI
Sbjct: 840 HRELESLMENSSPCQLRDSISNTSGKVNVILQSYISRAHVEDFTLTSDTNYVAQNAGRIT 899
Query: 453 RALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNK 512
RALFEI + R A A L + +QW E PL Q L D+ K
Sbjct: 900 RALFEIAMSRTWA-SAFTILSLNKSIDRRQWSFEHPLLQFDL-----------PHDLAVK 947
Query: 513 IEQR--GLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKI 570
+E + L++E+L +M E+ ++ + +G VK+ ++PLL I LLP+T+ VL++
Sbjct: 948 VENQCGSLSLEELSDMSTGELGDLIHNRKMGPTVKKFISKLPLLNINVDLLPLTKNVLRL 1007
Query: 571 HLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIP 630
L I NF+W D ++ FWI+VED + I H E LL+K+ V T L TIP
Sbjct: 1008 VLNITPNFNW-DMRYHGNSQMFWIFVEDSNGLEILHHEQLLLNKRNVSTS--HLLSFTIP 1064
Query: 631 LSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQY 690
+S+PLP+Q I A+SD++LG+ +S +++ + P T LL+LQPLP++AL P
Sbjct: 1065 VSNPLPSQLYIIAVSDKWLGAETVTPVSLSNVVFHDDSNPITELLDLQPLPITALHDPVL 1124
Query: 691 ESLY--KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVV 748
E + +FS FN +QTQ FH +YHTD N+ +GAPTGSGKT+AAE+ +R P++KVV
Sbjct: 1125 EGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWRALHNYPKSKVV 1184
Query: 749 YIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR 808
YIAP+KALVKERV DW + + ++ELTGD PD++A+++A++I+TTPEKWDG++R
Sbjct: 1185 YIAPMKALVKERVKDWGHRLVEPMGISMIELTGDTNPDVKAVTNANIIITTPEKWDGITR 1244
Query: 809 SWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA 868
SW++R YVQ V+LII+DEIHLLG DRGPVLE+IVSR+N+++S T + VR++GLSTA+ANA
Sbjct: 1245 SWKSRKYVQDVSLIILDEIHLLGSDRGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANA 1304
Query: 869 KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEK 928
DLA WLNI + G++NFR SVRPVPLE++I GFPG+ YCPRM MNKP + AIK HSP +
Sbjct: 1305 NDLANWLNI-RDGLFNFRHSVRPVPLEIYIDGFPGRAYCPRMMSMNKPAFQAIKTHSPTQ 1363
Query: 929 PVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGI 988
PV+IFVSSRRQTRLTA DLI E NP+ +++ + E++ IV ++D +LKL + FGI
Sbjct: 1364 PVLIFVSSRRQTRLTAKDLIAFCGLEDNPRRFLYMDEEELEMIVSEVEDKSLKLALPFGI 1423
Query: 989 GFHHAA 994
HHA
Sbjct: 1424 ALHHAG 1429
Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 182/373 (48%), Gaps = 36/373 (9%)
Query: 650 GSVVQHSMSFKHLIVPELH-PPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFH 708
GS + ++ +IVP P +L L +S++ ++ + N IQ+ ++
Sbjct: 230 GSEREDYQKYEEIIVPHAQRAPQMQGEKL--LEISSMDILCRKTFLSYQTLNRIQSLVYP 287
Query: 709 CLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEA-----------------KVVYIA 751
Y T+ N+L+ APTG+GKT A + + E+ K+VYIA
Sbjct: 288 IAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIA 347
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR-SW 810
P+KAL E V + A L K ELTGD+ I+ ++VTTPEKWD V+R S
Sbjct: 348 PMKALAAEVVEKMGKRL-AWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRKSV 406
Query: 811 QNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKD 870
+ + V L+IIDE+H+L ++RG V+E +V+R + +++ +R+VGLS L N D
Sbjct: 407 GDTQLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNYLD 466
Query: 871 LATWLNITK-QGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMN---KPIYTAIKQHSP 926
+A +L + + +G++ F + RP P+E H F G + P++ N +K
Sbjct: 467 VADFLGVNRYKGLFYFSSAFRPCPIEQH---FIGAKGSPKIVNSNIDEACFDKVLKLIQE 523
Query: 927 EKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHT-----SDAEMDNIVDNIKDSNLK 981
VMIFV SR++T +A L E + ++ S A+ D V K+ LK
Sbjct: 524 GHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQHEKYSLAQRD--VSKSKNKELK 581
Query: 982 LTIAFGIGFHHAA 994
+ +G H+A
Sbjct: 582 ELFKYSMGIHNAG 594
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 162/341 (47%), Gaps = 49/341 (14%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGTE Y+AK G Y + + DVLQ+ GRAGRPQ++ SG A I K + Y L +
Sbjct: 1468 IVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKKSFYKHFLHSG 1527
Query: 213 IPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNI 272
P+ES Y++ V L ++LNAE+A GTI I
Sbjct: 1528 FPVES-------------------------------YLHKV--LDNHLNAEIATGTIDCI 1554
Query: 273 DEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMI-RF 331
A+ +L+ +Y + R+ NP YG D+ + + + + L+ A L+K+ I R
Sbjct: 1555 QGAMDFLTCTYFYRRVHQNPVYYGADGDDQKS---IDTYLSKLVVTAFNELEKSACIYRV 1611
Query: 332 NMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVR-D 390
N T A T LGR S YY+ H I F + +T+ + L ++++A EF+ L +R +
Sbjct: 1612 NEET--YAPTTLGRIVSYYYLFHTTIRNFVQKITENAEFDLALQLLAEASEFDDLAIRHN 1669
Query: 391 EELHELD-----NLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVN 445
E+L ++ + C +P+ + H K IL Q ++R ++ V+D V
Sbjct: 1670 EDLINIEINKSLKYSAACLNLPMV----DAHVKAFILTQAHMARLKLPVDDYVTDTSTVL 1725
Query: 446 QNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHE 486
VIRII++ +++ + + +++ + +P E
Sbjct: 1726 DQVIRIIQSYIDVSAELGYSHVCLQYISLMQCLKQACYPSE 1766
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 14 DEVHLLHGDRGPVIEA---LVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLIC 70
+E+ + H R P ++ L ++ + ++ F ++LNRIQSLVY AY TNEN+LIC
Sbjct: 240 EEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQSLVYPIAYKTNENMLIC 299
Query: 71 APTGAGKTNVAMLTIAHQIKQHI 93
APTGAGKT+VA+L + I ++
Sbjct: 300 APTGAGKTDVALLAMLQTISNYV 322
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 7/64 (10%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+L C T A N+ + + +GT++Y+ + G +V +G+LDVLQIFGRAGRPQ
Sbjct: 614 ILCCTATLAWGVNLPAYAV-------LIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQ 666
Query: 127 YNTS 130
+ +S
Sbjct: 667 FESS 670
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
D L E V+L+IIDEVH+LH +RG VIE+LVART R +
Sbjct: 408 DTQLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLV 445
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 18 LLHGDRGPVIEALVARTL--RQIGQEVFKGVKS-----LNRIQSLVYDTAYHTNENLLIC 70
+ H D P+ E L + L + V +G+ + N +Q+ + T YHT+ N+ +
Sbjct: 1097 VFHDDSNPITELLDLQPLPITALHDPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVG 1156
Query: 71 APTGAGKTNVAML 83
APTG+GKT A L
Sbjct: 1157 APTGSGKTMAAEL 1169
Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSL 49
V L+I+DE+HLL DRGPV+E +V+R + + + K V+ L
Sbjct: 1255 VSLIILDEIHLLGSDRGPVLEMIVSR-MNYVASQTNKKVRVL 1295
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/842 (41%), Positives = 526/842 (62%), Gaps = 49/842 (5%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y+ + G + +G LD+LQ+ GRAGRPQY+T G +IT H +L +YLSLL Q+P
Sbjct: 829 KGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLP 888
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDE 274
IES V+ L D L NAE+ LG + N +
Sbjct: 889 IESQMVSKLPDML---------------------------------NAEIVLGNVQNAKD 915
Query: 275 AVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMR 334
AV WL Y+YL++RM +P YGIS+D++ DP L Q R L+ AA +LDK ++++++ +
Sbjct: 916 AVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKK 975
Query: 335 TRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELH 394
T + +T+LGR AS+YYI ++ ++ + + + L ++ + + S + EF+ + VR+EE
Sbjct: 976 TGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKL 1035
Query: 395 ELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRA 454
EL L E IP++ E K+N+LLQ +S+ ++ F+L++D+ YV Q+ R++RA
Sbjct: 1036 ELQKLL-ERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRA 1094
Query: 455 LFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIE 514
+FEI L+R A + + L M + + W PLRQ + L +++ KIE
Sbjct: 1095 IFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRK----------LPEEVVKKIE 1144
Query: 515 QRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHLTI 574
++ E L ++ EI ++R P +G + + P LE+ L PITR+ LK+ LTI
Sbjct: 1145 KKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTI 1204
Query: 575 KANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDP 634
+F W++K + +E FWI VED DS+ I H EYFLL K + E + +P+ +P
Sbjct: 1205 TPDFQWDEKVHGS-SEAFWILVEDVDSEVILHHEYFLLKAK--YAQDEHLITFFVPVFEP 1261
Query: 635 LPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLY 694
LP QY IR +SDR+L Q +SF+HLI+PE +PP T LL+LQPLPVSAL+ +ESLY
Sbjct: 1262 LPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLY 1321
Query: 695 --KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752
KF FNPIQTQ+F+ +Y++D+NV +GAPTGSGKTI AE R+ Q E + VYI P
Sbjct: 1322 QDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITP 1381
Query: 753 LKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQN 812
++AL ++ DW KF+ RL KKVV LTG+ + D++ + ++I++TPEKWD +SR W+
Sbjct: 1382 MEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ 1441
Query: 813 RNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLA 872
R VQ++ L ++DE+HL+G + GPVLEVI SR+ +ISS +R +R+V LS++L+NAKD+A
Sbjct: 1442 RKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA 1501
Query: 873 TWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMI 932
WL + +NF P+VRPVPLE+HI GF R+ M KP+Y AI +HSP+KPV++
Sbjct: 1502 HWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIV 1561
Query: 933 FVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHH 992
FV SR+QTRLTAID++T A + + ++H ++ ++ ++ + DS LK T+ G+G+ H
Sbjct: 1562 FVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH 1621
Query: 993 AA 994
Sbjct: 1622 EG 1623
Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 190/359 (52%), Gaps = 17/359 (4%)
Query: 650 GSVVQHSMSFKHLIVPELHP-PHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFH 708
GS + ++ + VP L P P + E Q LPV L + F N IQ++++
Sbjct: 433 GSFRRQRKGYEEVHVPALKPKPFGS--EEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYR 490
Query: 709 CLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ---------CPEAKVVYIAPLKALVKE 759
TD N+LL APTG+GKT A + R + + K++YIAP+++LV+E
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 760 RVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSV 819
V + + A V ELTGD + IS+ +IV TPEKWD ++R R Y Q V
Sbjct: 551 MVGSFGKRL-ATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLV 609
Query: 820 ALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNIT- 878
LII+DEIHLL +DRGPVLE +V+R T+ +VRL+GLS L N +D+AT+L +
Sbjct: 610 RLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDP 669
Query: 879 KQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRR 938
+G++ F S RPVPLE G K+ R MN+ +Y I +H+ + V++FV SR+
Sbjct: 670 AKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRK 729
Query: 939 QTRLTAIDLITILACETNPKMWVHTSDAEMDNI---VDNIKDSNLKLTIAFGIGFHHAA 994
+T TA + + + +++ A + + + K+ LK + +G HHA
Sbjct: 730 ETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAG 788
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 175/397 (44%), Gaps = 57/397 (14%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T+ YN K YV I DVLQ+ G A RP + G I+ K + + L +P+E
Sbjct: 1666 TQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVE 1725
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAV 276
S+ +D + D+ NAE+ TI N +AV
Sbjct: 1726 SH--------------------LDHC-------------MHDHFNAEIVTKTIENKQDAV 1752
Query: 277 RWLSYSYLHVRMRINPREY---GISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNM 333
+L++++L+ RM NP Y GIS+ ++ H + L+E L+++ I
Sbjct: 1753 DYLTWTFLYRRMTQNPNYYNLQGISHRHLS------DHLSELVEQTLSDLEQSKCISIED 1806
Query: 334 RTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEEL 393
D+A +LG A+ YYI + IELF+ + G++ +IS A E+E + +R E
Sbjct: 1807 EM-DVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHED 1865
Query: 394 HELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIR 453
+ L L Q+ + H K N+LLQ LSR ++ S L SD E + IR+I+
Sbjct: 1866 NLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQL-SAELQSDTEEILSKAIRLIQ 1924
Query: 454 ALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKI 513
A ++ A ++ A M W ++ L+Q+ P + + +
Sbjct: 1925 ACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQL----------PHFTSEHIKRC 1974
Query: 514 EQRGL-TVEDLREMPAKEISYMLR--DPHVGDKVKQC 547
+G+ +V D+ EM +E + +L+ D + D + C
Sbjct: 1975 TDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFC 2011
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 24 GPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAML 83
G + L L + Q F+G K+LNRIQS +Y A T+ENLL+CAPTGAGKTNVA++
Sbjct: 456 GSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALM 515
Query: 84 TIAHQIKQHIS 94
+ +I +HI+
Sbjct: 516 CMLREIGKHIN 526
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 5 TELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
T+LV+L+I+DE+HLLH DRGPV+EALVAR +R I
Sbjct: 606 TQLVRLIILDEIHLLHDDRGPVLEALVARAIRNI 639
Score = 41.2 bits (95), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 49 LNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMY 100
N IQ+ V++T Y++++N+ + APTG+GKT A I + Q S+G +Y
Sbjct: 1328 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-SEGRCVY 1378
Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVK 47
+ L ++DEVHL+ G+ GPV+E + +R +R I ++ + ++
Sbjct: 1448 INLFVVDEVHLIGGENGPVLEVICSR-MRYISSQIERPIR 1486
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/843 (42%), Positives = 525/843 (62%), Gaps = 50/843 (5%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTS-GHATIITPHEKLNHYLSLLTNQI 213
KGT++Y++K G ++ +GI DV+QIFGR GRP + ++ G + T +++L+HY+SL+T Q
Sbjct: 642 KGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQH 701
Query: 214 PIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNID 273
PIES F + L D NLNAE++LG++ N+D
Sbjct: 702 PIESRFGSKLVD---------------------------------NLNAEISLGSVTNVD 728
Query: 274 EAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNM 333
EA+ WL Y+Y+ VRMR NP YGI ++E+A DP L + R +I AA+ L MI F+
Sbjct: 729 EAIEWLGYTYMFVRMRKNPFTYGIDWEEIANDPQLYERRRKMIVVAARRLHALQMIVFDE 788
Query: 334 RTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEEL 393
+ DLGR +S++Y+ + +E+F + + +LSMIS + EF+ +K R+EE
Sbjct: 789 VSMHFIAKDLGRVSSDFYLLNESVEIFNQMCDPRATEADVLSMISMSSEFDGIKFREEES 848
Query: 394 HELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIR 453
EL L+ E E I + GK N+LLQ +S+ R+ +L SD YV QN +RI R
Sbjct: 849 KELKRLSDESVECQIGSQLDTPQGKANVLLQAYISQTRIFDSALSSDSNYVAQNSVRICR 908
Query: 454 ALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKI 513
ALF I ++R + L E + W + PL Q L N I+ +I
Sbjct: 909 ALFLIGVNRRWGKFSNVMLNICKSIEKRLWAFDHPLCQFDLPEN-----------IIRRI 957
Query: 514 EQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHLT 573
++E L E+ A E+ ++ + G ++ + P + IE+++ PIT V++IH+
Sbjct: 958 RDTKPSMEHLLELEADELGELVHNKKAGSRLYKILSRFPKINIEAEIFPITTNVMRIHIA 1017
Query: 574 IKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSD 633
+ +F W+ + A+ FW++VE+ D I H E F+L+++Q+ + E + IPLSD
Sbjct: 1018 LGPDFVWDSRIHGD-AQFFWVFVEESDKSQILHFEKFILNRRQLNNQHEMDFM--IPLSD 1074
Query: 634 PLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESL 693
PLP Q +++ +SD ++G H++SF+HLI P T LL+L+PLP SALQ P ES+
Sbjct: 1075 PLPPQVVVKVVSDTWIGCESTHAISFQHLIRPFNETLQTKLLKLRPLPTSALQNPLIESI 1134
Query: 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753
Y F +FNP+QT F+ LY+T+ N +G+PTGSGKTI AE+ + FK P K+VYIAP+
Sbjct: 1135 YPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPM 1194
Query: 754 KALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNR 813
KALV+ERV DW+ K KVVELTGD PD + + A++++TTPEK+DG+SR+WQ R
Sbjct: 1195 KALVRERVDDWRKKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTR 1254
Query: 814 NYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLAT 873
+VQ V+LII+DEIHLL DRGP+LE+IVSR+N+ISS TK+ VRL+G+STA++NA D+A
Sbjct: 1255 KFVQDVSLIIMDEIHLLASDRGPILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAG 1314
Query: 874 WLNITKQGMYNFRPSVRPVPLEVHISGFPGK-QYCPRMAKMNKPIYTAIKQHSPEKPVMI 932
WL + G+YNF SVRPVPL+++I GFP +CP M MNKP++ AIKQHSP+KP +I
Sbjct: 1315 WLGVKDHGLYNFPSSVRPVPLKMYIDGFPDNLAFCPLMKTMNKPVFMAIKQHSPDKPALI 1374
Query: 933 FVSSRRQTRLTAIDLITILACETNPKMWVHTSD-AEMDNIVDNIKDSNLKLTIAFGIGFH 991
FV+SRRQTRLTA+DLI + E NP+ +++ D E+ + + D LKL++ FGIG H
Sbjct: 1375 FVASRRQTRLTALDLIHLCGMEDNPRRFLNIDDEEELQYYLSQVTDDTLKLSLQFGIGLH 1434
Query: 992 HAA 994
HA
Sbjct: 1435 HAG 1437
Score = 170 bits (430), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 175/327 (53%), Gaps = 28/327 (8%)
Query: 691 ESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP------- 743
++++ + N IQ+ ++ Y T+ N+L+ APTG+GKT A +T KQ
Sbjct: 280 KTVFPYETLNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENE 339
Query: 744 ------EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIV 797
+ KV+Y+APLKAL E V + K A +V ELTGD+ I + VIV
Sbjct: 340 IDIQYDDFKVIYVAPLKALAAEIVDKFSKKL-APFNIQVRELTGDMQLTKAEILATQVIV 398
Query: 798 TTPEKWDGVSRSWQNRN-YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNV 856
TTPEKWD V+R N V V L+IIDE+HLL EDRG V+E +V+R ++ +
Sbjct: 399 TTPEKWDVVTRKANGDNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQVESSQSMI 458
Query: 857 RLVGLSTALANAKDLATWLNITKQ-GMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMN- 914
R++GLS L N D+A +L + +Q GM+ F S RP PLE + G GK R +K N
Sbjct: 459 RIIGLSATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKA-GSRQSKENI 517
Query: 915 -KPIYTAIKQHSPEK-PVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDA-EMD-- 969
K Y + + VM+FV SR++T +A + I + E+N ++ + D E D
Sbjct: 518 DKVAYDKLSEMIQRGYQVMVFVHSRKETVKSARNFIKL--AESNHEVDLFAPDPIEKDKY 575
Query: 970 --NIVDNIKDSNLKLTIAFGIGFHHAA 994
++V N +D ++K FG G HHA
Sbjct: 576 SRSLVKN-RDKDMKEIFQFGFGIHHAG 601
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 140/315 (44%), Gaps = 52/315 (16%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT+ ++AK Y + + D+LQ+ GRAGRP Y+T+G A + T K Y L P
Sbjct: 1478 KGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFP 1537
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDE 274
+ES +L + L D+L AE+ G+I N E
Sbjct: 1538 VES--------------SLHKV-------------------LDDHLGAEITSGSITNKQE 1564
Query: 275 AVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMR 334
A+ +LS+++L R NP YGI D + + +H ++LI++ + L ++ + +
Sbjct: 1565 ALDFLSWTFLFRRAHHNPTYYGIEDD--TSTAGVSEHLSSLIDSTLENLRESQCVL--LH 1620
Query: 335 TRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELH 394
D+ T +S YYI H I + + +L +S A E+ +L VR E+
Sbjct: 1621 GDDIVATPFLSISSYYYISHLTIRQLLKQIHDHATFQEVLRWLSLAVEYNELPVRGGEII 1680
Query: 395 ELDNLTQEC-----------CEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEY 443
+ ++Q+ E+P+ + H K +LLQ LSR + + D
Sbjct: 1681 MNEEMSQQSRYSVESTFTDEFELPMW----DPHVKTFLLLQAHLSRVDLPIADYIQDTVS 1736
Query: 444 VNQNVIRIIRALFEI 458
V +RI++A ++
Sbjct: 1737 VLDQSLRILQAYIDV 1751
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 40/45 (88%)
Query: 47 KSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQ 91
++LN+IQSLVY AY TNEN+LICAPTGAGKT++A+LTI + IKQ
Sbjct: 286 ETLNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQ 330
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 30/38 (78%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
D L VKLLIIDEVHLLH DRG VIE LVARTLRQ+
Sbjct: 414 DNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQV 451
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 47 KSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIK 90
K N +Q++ + T Y+TNEN + +PTG+GKT VA L I H K
Sbjct: 1138 KYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFK 1181
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+LI T A N+ AH + I +GT+ ++AK Y + + D+LQ+ GRAGRP
Sbjct: 1457 ILIATSTLAWGVNLP----AHLV---IIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPA 1509
Query: 127 YNTS 130
Y+T+
Sbjct: 1510 YDTT 1513
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVAR 33
V L+I+DE+HLL DRGP++E +V+R
Sbjct: 1260 VSLIIMDEIHLLASDRGPILEMIVSR 1285
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/846 (39%), Positives = 514/846 (60%), Gaps = 50/846 (5%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++YN + G +V + LDVLQ+ GRAGRPQY+T G +IT H +L YLSLL Q+P
Sbjct: 829 KGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLP 888
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDE 274
IES F++ L D LNAE+ LGT+ ++ +
Sbjct: 889 IESQFISKLP---------------------------------DMLNAEIVLGTVQHLQD 915
Query: 275 AVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMR 334
AV WL Y+YL++RM NP YG+S+D + DP L QHR L+ AA L+++ +I+++ +
Sbjct: 916 AVNWLGYTYLYIRMLRNPTLYGVSHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRK 975
Query: 335 TRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELH 394
T +TDLGR AS+YY+ H + + + + + L ++ + + S + EF + VR+EE
Sbjct: 976 TGHFQVTDLGRIASHYYLTHETMLTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKL 1035
Query: 395 ELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRA 454
EL L E IPI+ E KVN+LLQ +S+ ++ F+L+SD+ ++ Q+ R++RA
Sbjct: 1036 ELQKLM-ERVPIPIKESIEEHSAKVNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRA 1094
Query: 455 LFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIE 514
+FEI L R A +A + L M + + W TPLRQ K + + +I K+E
Sbjct: 1095 IFEIVLTRGWAQLADKTLTLCKMIDRRMWQSMTPLRQFKKMPD----------EIAKKLE 1144
Query: 515 QRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHLTI 574
++ L ++ E+ ++R P +G + + + P LE+ + + PITR L++ LTI
Sbjct: 1145 KKHFPWGRLYDLEPHELGELIRVPKLGKTIHKFVHQFPKLELSTHIQPITRGTLRVELTI 1204
Query: 575 KANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDP 634
+F W++K +E FW+ +ED DS+ I H E+FLL KQ ++ E L +P+ +P
Sbjct: 1205 TPDFQWDEKVHGQ-SEGFWVLIEDVDSELILHHEFFLL--KQKYSQDEHQLKFFVPVFEP 1261
Query: 635 LPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLY 694
LP QY +R +SDR++G+ Q +SF+HLI+PE + P T LL+LQPLP+SAL+QP++ES Y
Sbjct: 1262 LPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNMPPTELLDLQPLPISALRQPKFESFY 1321
Query: 695 --KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752
+F FNPIQTQ+F+ +Y++D NV +GAPTGSGK AE R+F +A+ VY+
Sbjct: 1322 SQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMTIAEFAIMRLFTTQSDARCVYLVS 1381
Query: 753 LKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQN 812
+AL ADW KF L KVV+LTG+ D++ I+ +++TT +KWD +SR W+
Sbjct: 1382 EEALADLVFADWHSKF-GSLDIKVVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRWKQ 1440
Query: 813 RNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLA 872
R VQ V L I+DE+ L+G + GPVLE++ SR+ +ISS ++ +R+V LS +L +A+D+A
Sbjct: 1441 RKNVQLVNLFIVDELQLVGGEEGPVLEIVCSRMRYISSQIEKQIRIVALSASLTDARDVA 1500
Query: 873 TWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMI 932
WL +NF PSVRP+PLE+HI G+ R+A M+KP+Y AI ++S KPV++
Sbjct: 1501 QWLGCNPNATFNFHPSVRPIPLELHIQGYNVTHNATRIATMSKPVYNAILKYSAHKPVIV 1560
Query: 933 FVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHH 992
FVSSR+Q RLTAID++T A + P + H + ++ ++ + D LK T+A G+ + H
Sbjct: 1561 FVSSRKQARLTAIDVLTYAASDLQPNRFFHAEEEDIKPFLERMTDKTLKETLAQGVAYLH 1620
Query: 993 AAAEAA 998
A+
Sbjct: 1621 EGLSAS 1626
Score = 196 bits (497), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 192/360 (53%), Gaps = 19/360 (5%)
Query: 650 GSVVQHSMSFKHLIVPELHP-PHTNLLELQPL-PVSALQQPQYESLYKFSHFNPIQTQIF 707
GS + ++ + VP L P P ELQP+ + QP +E F N IQ++++
Sbjct: 433 GSYRKQRKGYEEVHVPALKPVPFDANEELQPVDKLPKYVQPVFEG---FKTLNRIQSRLY 489
Query: 708 HCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ---------CPEAKVVYIAPLKALVK 758
+D N+LL APTG+GKT A +T R + + K++Y+AP+K+LV+
Sbjct: 490 KAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQ 549
Query: 759 ERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQS 818
E V ++ + A V ELTGD + I++ VIV TPEKWD ++R R +V
Sbjct: 550 EMVGNFGRRL-ACYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSL 608
Query: 819 VALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNIT 878
V L+IIDEIHLL ++RGPVLE +V+R T+ VRLVGLS L N +D+AT+L +
Sbjct: 609 VRLVIIDEIHLLHDERGPVLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVK 668
Query: 879 -KQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSR 937
+G++ F S RPV LE G K+ R MN+ +Y +H+ V++FV SR
Sbjct: 669 PDKGLFYFDNSYRPVSLEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVHSR 728
Query: 938 RQTRLTAIDLITILACETNPKMWVHTSDAEMDNI---VDNIKDSNLKLTIAFGIGFHHAA 994
++T TA + + + ++ A M+ + + +K++ LK + +G HHA
Sbjct: 729 KETGKTARAVRDMCLEQDTLGSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAG 788
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 126/522 (24%), Positives = 220/522 (42%), Gaps = 75/522 (14%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T+ YN K+ Y I DVLQ+ GRA RP + ++ K + + + +PIE
Sbjct: 1665 TQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDFFKKFINEPLPIE 1724
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAV 276
S+ D+ + D+ NAEV TI N +AV
Sbjct: 1725 SHL-----DH----------------------------RMHDHFNAEVVTKTIENKQDAV 1751
Query: 277 RWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMRTR 336
+L++++L+ R+ NP Y + + T L H + L+EN L+++ I
Sbjct: 1752 DYLTWTFLYRRLTQNPNYYNL---QGVTHRHLSDHLSELVENTLSDLEQSKCISVEDDMD 1808
Query: 337 DLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHEL 396
L + +LG A+ YYI + IELF+ + G+L +IS A E+E + VR E L
Sbjct: 1809 TLPL-NLGMIAAYYYINYTTIELFSLSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVL 1867
Query: 397 DNLTQECCEIPIRGGSENV------HGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIR 450
L+Q + G +E H K N+LLQ LSR ++ L D E + IR
Sbjct: 1868 RTLSQRLPN-KLTGPNETAPKFNDPHIKTNLLLQAHLSRLQLGP-ELQGDTEQILSKAIR 1925
Query: 451 IIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDIL 510
+I+A ++ A ++ A M W ++ L+Q+ P P+I+
Sbjct: 1926 LIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQL----------PHFSPEIV 1975
Query: 511 NKIEQRGL-TVEDLREMPAKEISYMLR--DPHVGDKVKQCAWEIPLLEIESKLLPITRTV 567
+ ++ + TV D+ E+ ++ + +L+ D + D + C P +E+ +++ R
Sbjct: 1976 KRCTEKKIETVFDIMELEDEDRTRLLQLSDLQMADVARFCN-RYPNIELNYEVVDKDRIN 2034
Query: 568 LKIHLTIKANFSWNDKNKSTYAEPF---------WIWVEDPDSDFIYHSEYFLLSKKQVI 618
+ + D+ PF W+ + DP ++ LLS K++
Sbjct: 2035 SGSTVNVVVQLEREDEVTGPVIAPFFPQKREEGWWVVIGDPKTN-------SLLSIKRLT 2087
Query: 619 TKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFK 660
+ + + + P + Y + MSD YLG ++ S +
Sbjct: 2088 LQQKAKVKLDFVAPSPGKHDYTLYYMSDSYLGCDQEYKFSIE 2129
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEM 99
Q VF+G K+LNRIQS +Y A ++EN+L+CAPTGAGKTNVA+LT+ +I +HI++ +
Sbjct: 472 QPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTI 531
Query: 100 YNAKHGCYVHIGILDVL--QIFGRAGR 124
NA+ +++ + L ++ G GR
Sbjct: 532 -NAQDFKIIYVAPMKSLVQEMVGNFGR 557
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 30/32 (93%)
Query: 7 LVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
LV+L+IIDE+HLLH +RGPV+EALVART+R I
Sbjct: 608 LVRLVIIDEIHLLHDERGPVLEALVARTIRNI 639
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 13/105 (12%)
Query: 45 GVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKH 104
G+ ++R +LV D + +L+ T A N+ T+ I +GT++YN +
Sbjct: 788 GMTRVDR--TLVEDLFADRHIQVLVSTATLAWGVNLPAHTV-------IIKGTQVYNPEK 838
Query: 105 GCYVHIGILDVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELF 149
G +V + LDVLQ+ GRAGRPQY+T G +N H++++ +
Sbjct: 839 GRWVELSALDVLQMLGRAGRPQYDTKGEGILITN----HSELQFY 879
Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 27 IEALVARTLRQIGQEVFKGVK--SLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLT 84
++ L LRQ E F + N IQ+ V++ Y+++EN+ + APTG+GK +A
Sbjct: 1304 LQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMTIAEFA 1363
Query: 85 I 85
I
Sbjct: 1364 I 1364
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 17 HLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAG 76
H D P +E + +TL++ + +GV L+ +++ L+ +G
Sbjct: 1590 HAEEEDIKPFLERMTDKTLKET---LAQGVAYLHE--------GLSASDHRLVEQLFDSG 1638
Query: 77 KTNVAM----LTIAHQIKQH--ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRP 125
VA+ L I H I T+ YN K+ Y I DVLQ+ GRA RP
Sbjct: 1639 AVQVAVISRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRP 1693
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 614 bits (1583), Expect = e-174, Method: Compositional matrix adjust.
Identities = 310/846 (36%), Positives = 495/846 (58%), Gaps = 55/846 (6%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++YN + G + +G LD++Q+ GRAGRPQY+ G +IT H +L +YLSL+ Q+P
Sbjct: 822 KGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLP 881
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDE 274
+ES V+ L D LNAEV LGT+ ++ EA
Sbjct: 882 VESQMVSRLTDMLNAEVVLGTVSSVSEA-------------------------------- 909
Query: 275 AVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMR 334
WL Y++L VRM NP YGI++++ DP L Q R LI A +LDKA +I+++ R
Sbjct: 910 -TNWLGYTFLFVRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKR 968
Query: 335 TRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELH 394
+ + T+LGR AS++Y + ++ + + + + D+ + + S + EF+ L VRDEE
Sbjct: 969 SGIIQATELGRIASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKL 1028
Query: 395 ELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRA 454
EL + E IPI+ + K N+LLQ +S+ ++ F+L +D+ +V Q+ R+ RA
Sbjct: 1029 ELQKMA-EHAPIPIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRA 1087
Query: 455 LFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIE 514
LFEI L R A +A + L M +QW PL Q K + + +++ I+
Sbjct: 1088 LFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQFKKIPS----------EVVRSID 1137
Query: 515 QRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHLTI 574
++ + + L ++ ++ +++ P +G + + + P LE+ + + PITRT ++I LTI
Sbjct: 1138 KKNYSFDRLYDLDQHQLGDLIKMPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTI 1197
Query: 575 KANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDP 634
+F W++K + AE FWI++ED D + I H E+FLL KQ E + M +P+ DP
Sbjct: 1198 TPDFKWDEKVHGS-AEGFWIFIEDTDGEKILHHEFFLL--KQKFCSDEHVVKMIVPMFDP 1254
Query: 635 LPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLY 694
+P Y +R +SDR++G+ +SF+HLI+PE +PP T LL+LQPLP+SA+ ++++++
Sbjct: 1255 MPPLYYVRIVSDRWIGAETVLPISFRHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVF 1314
Query: 695 K---FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751
F FNPIQTQ+F ++ ++ NV++ AP GSGKT AE+ R F+ PEAK VYI
Sbjct: 1315 AESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYIT 1374
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQ 811
P++ + + ADWK + E + +V LTG+ T D++ +I++TPE+WD +SR W+
Sbjct: 1375 PMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWK 1434
Query: 812 NRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDL 871
R VQ+V L I D++H++G G V EV+ SR +ISS + VR+V LS++L NA+DL
Sbjct: 1435 QRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDL 1494
Query: 872 ATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPE---K 928
WL + +NF PS RPVPL++ I F R A M +P+Y AI +H+ + K
Sbjct: 1495 GMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSHNASRFAAMERPVYQAICRHAGKLEPK 1554
Query: 929 PVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTS--DAEMDNIVDNIKDSNLKLTIAF 986
P ++FV RRQTR A+ L+T+ + PK ++ + D ++ +I+D +L+ +++
Sbjct: 1555 PALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVSC 1614
Query: 987 GIGFHH 992
G+GF H
Sbjct: 1615 GVGFLH 1620
Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 34/367 (9%)
Query: 650 GSVVQHSMSFKHLIVPELHP----PHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQ 705
GS + S++ + VP L P L+ + LP A QP ++ + N IQ++
Sbjct: 427 GSYRRQKKSYEEIHVPALKPRPFAEGEKLVSVSELPKWA--QPAFDG---YKSLNRIQSR 481
Query: 706 IFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFK---------QCPEAKVVYIAPLKAL 756
+ + ++LL APTG+GKT A +T + + E K+VYIAP+K+L
Sbjct: 482 LCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSL 541
Query: 757 VKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYV 816
V+E V + + A V E+TGD + + VIV TPEK+D V+R R Y
Sbjct: 542 VQEMVGSFSKRL-APFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYN 600
Query: 817 QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLN 876
Q V L+IIDEIHLL +DRGPVLE IV R RLVGLS L N +D+AT+L
Sbjct: 601 QMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLR 660
Query: 877 ITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSS 936
+ + ++ F S RPVPLE G K+ R MN+ +Y I +H+ + V++FV S
Sbjct: 661 VKPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHS 720
Query: 937 RRQTRLTA---------IDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFG 987
R++T TA D ++ E + + ++AE K+ +LK + +G
Sbjct: 721 RKETAKTAKAIRDACLEKDTLSAFMREGSASTEILRTEAE------QAKNLDLKDLLPYG 774
Query: 988 IGFHHAA 994
HHA
Sbjct: 775 FAIHHAG 781
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 113/530 (21%), Positives = 229/530 (43%), Gaps = 93/530 (17%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T+ YN K+ Y I D+L + G A RP ++ ++ K +Y L + +P+E
Sbjct: 1665 TQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVE 1724
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAV 276
S+ +D L D+ NAE+ TI N +A+
Sbjct: 1725 SH--------------------LDHC-------------LHDHFNAEIVTKTIENKQDAI 1751
Query: 277 RWLSYSYLHVRMRINPREY---GISYDEVATD-PDLIQHRTTLIENAAQILDKAHMIRFN 332
+L+++ L+ RM NP Y G ++ ++ +L++ +EN+ I K M
Sbjct: 1752 DYLTWTLLYRRMTQNPNYYNLQGTTHRHLSDALSELVELTLKDLENSKCIAVKDEM---- 1807
Query: 333 MRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEE 392
D +LG AS YYI + IELF+ + + ++ +IS + EF + +R
Sbjct: 1808 ----DTVSLNLGMIASYYYISYQTIELFSMSLKEKTKTRALIEIISASSEFGNVPMR--- 1860
Query: 393 LHELDNLTQECCE-IPIRGGSENV---HGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNV 448
H+ D + ++ E +P + ++ H KVN+L+ LSR ++ + L D E +
Sbjct: 1861 -HKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVKLTA-ELNKDTELIVLRA 1918
Query: 449 IRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPD 508
R+++A ++ A ++ + M + +E L+Q+ P
Sbjct: 1919 CRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEPYLKQL----------PHCSAA 1968
Query: 509 ILNKIEQRGLT-VEDLREMPAKEISYMLR--DPHVGDKVKQCAWEIPLLEIESKL---LP 562
+L + + + +T V +L E+ + S +L+ + D + C P +E+ ++L +
Sbjct: 1969 LLERAKAKEVTSVFELLELENDDRSDILQMEGAELADVARFCN-HYPSIEVATELENDVV 2027
Query: 563 ITRTVLKIHLTIKANFSWNDKN------------KSTYAEPFWIWVEDPDSDFIYHSEYF 610
+ L + ++++ + ND + + E +W+ + D +S+
Sbjct: 2028 TSNDNLMLAVSLERD---NDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESN-------A 2077
Query: 611 LLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFK 660
LL+ K+++ + S+ + P +++ + +SD YLG+ + ++FK
Sbjct: 2078 LLTIKRLVINEKSSVQLDFAAPRPGHHKFKLFFISDSYLGADQEFDVAFK 2127
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 43/57 (75%)
Query: 39 GQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQ 95
Q F G KSLNRIQS + D+A + E+LL+CAPTGAGKTNVA+LT+ +I H+++
Sbjct: 465 AQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAE 521
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 3 ALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQ 40
A ++V+LLIIDE+HLLH DRGPV+E++V RT+RQ+ Q
Sbjct: 598 AYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQMEQ 635
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 15/124 (12%)
Query: 48 SLNRI-QSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC 106
+NR+ ++LV D + +L T A N+ T+ I +GT++YN + G
Sbjct: 781 GMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTV-------IIKGTQIYNPEKGR 833
Query: 107 YVHIGILDVLQIFGRAGRPQYNTSDLGRTASN-----YYIK--HNDIELFTEHMTKGTEM 159
+ +G LD++Q+ GRAGRPQY+ G +N YY+ + + + ++ +++ T+M
Sbjct: 834 WTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDM 893
Query: 160 YNAK 163
NA+
Sbjct: 894 LNAE 897
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 40 QEVF--KGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
Q VF G K N IQ+ V+ T + +NEN+++CAP G+GKT +A L +
Sbjct: 1311 QTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAV 1358
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 599 bits (1545), Expect = e-170, Method: Compositional matrix adjust.
Identities = 315/847 (37%), Positives = 509/847 (60%), Gaps = 56/847 (6%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGT++YN + G + + LDV Q+ GRAGRP ++ G IIT +L YLSLL Q
Sbjct: 897 IIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHELQFYLSLLNTQ 955
Query: 213 IPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNI 272
+ IES F++ +A DNLNAE+ LG+I +
Sbjct: 956 LSIESQFISRIA---------------------------------DNLNAEIVLGSIQTV 982
Query: 273 DEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFN 332
+AV WL Y+YL++ M NP Y ISYD+ DP L Q R L+ +AA IL+K +I+++
Sbjct: 983 RDAVNWLGYTYLYICMIRNPPLYEISYDDFEKDPLLEQRRLDLVHSAATILEKNSLIKYD 1042
Query: 333 MRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEE 392
++ L T+LG+ AS+YYI ++ + ++ EH+ + D+ +L + S + EF+ + VR+ E
Sbjct: 1043 RKSGKLQSTELGKVASHYYITNSSMSIYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGE 1102
Query: 393 LHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRII 452
EL+ L E IPI+ E K+N+LLQT +S +++ F+LV D+ Y+ Q+ RI
Sbjct: 1103 KFELEKLL-ERVPIPIKENIEEPSSKINVLLQTYISNLKLDGFALVVDMFYIAQSASRIT 1161
Query: 453 RALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNK 512
RALFEI L + A +A + L A M ++K W ++PLRQ ++ P +LN+
Sbjct: 1162 RALFEIVLKKGWAQLAKKILNLAKMIDSKMWSSQSPLRQFHKIS----------PKVLNQ 1211
Query: 513 IEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHL 572
+E+RG+ +EDL E ++++ +++P G ++ P L++ + + PI +L++ L
Sbjct: 1212 LERRGIPIEDLYEYNSQQLGNAIQNPSEGKQLFDLIHNFPKLDLTAHVQPILHGLLRVEL 1271
Query: 573 TIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLI-MTIPL 631
+I +F ++++ + + +WI VED D + I + EYF L KK V E+ L+ T+PL
Sbjct: 1272 SITPDFQYDERYHNN-SIGWWIIVEDVDGERILYFEYFSLKKKMV--NGEDQLVSFTVPL 1328
Query: 632 SDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYE 691
S PLP QY +R +SD ++G+ +SF+HLI+PE +PP LL+LQPLP+ L+ P+ E
Sbjct: 1329 SQPLPPQYYVRVISDHWIGAEYSLPISFQHLILPEKYPPCRPLLDLQPLPIQVLKDPKAE 1388
Query: 692 SLYK--FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVY 749
S++K FS FN IQTQ+F+C+Y +++N + APT SGKT+ AEI R FKQ P+AKVVY
Sbjct: 1389 SIFKPTFSIFNAIQTQVFNCMYQSNDNAFISAPTNSGKTVCAEIALIRCFKQNPKAKVVY 1448
Query: 750 IAPLKALVKERVADWKVKFEARLKKKVV--ELTGDVTPDIQAISSASVIVTTPEKWDGVS 807
+AP++ L R+ DW KF + +V +LTGD D + + +++IVT EKWD +S
Sbjct: 1449 LAPMQDLASVRLKDWSNKFGVKSPFGLVVSDLTGDAVTDNKILDRSNIIVTNCEKWDILS 1508
Query: 808 RSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867
R W+ R +QS+ L+I+DE+HL+G + GP +E++VSR+ +IS+ T +R++ LS+++AN
Sbjct: 1509 RKWKQRKALQSINLLIVDELHLIGGEYGPTMEIVVSRMRYISTQTGNALRVIALSSSIAN 1568
Query: 868 AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPE 927
A+DL W+ T Q YNF P+VRP+P+E I GF + RM M KP + ++ +
Sbjct: 1569 ARDLVLWIGATPQTCYNFHPNVRPIPVEYQIQGFEFPHFNARMLAMTKPTVYEVAKNKNQ 1628
Query: 928 KPVMIFVSSRRQTRLTAIDLITILAC--ETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIA 985
+ + +FV +R+ +R A D+I ++ +T K ++ + + ++++ LK ++
Sbjct: 1629 QSI-VFVPTRKLSRSLAADIIANVSSFEDTLTKPYLVCEEHVLTPYLEDVDSFALKQSLQ 1687
Query: 986 FGIGFHH 992
G+ F+H
Sbjct: 1688 MGVAFYH 1694
Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 203/377 (53%), Gaps = 32/377 (8%)
Query: 650 GSVVQHSMSFKHLIVP-ELHPP---HTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQ 705
GS + F+ + VP +PP + L+ ++ LP + + P ES K N +Q++
Sbjct: 502 GSKREQYKGFEEIHVPARANPPFNPNERLISIEELPEWS-RLPFEESGVK--SLNRVQSK 558
Query: 706 IFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEA----------KVVYIAPLKA 755
+F C + TDNN+LL APT SGKT A +T + + K+VYIAP+K+
Sbjct: 559 LFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKS 618
Query: 756 LVKERVADWKVKFEARLKKK---VVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQN 812
LV+E V + F RLK V ELTGD + + IS +IVTTPEKWD ++R +
Sbjct: 619 LVQEMVGN----FSKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITRKSGD 674
Query: 813 RNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLA 872
R Y Q V LIIIDEIHLL ++RGPVLE IV+R + T++ VRLVGLS L N +D+A
Sbjct: 675 RAYTQLVKLIIIDEIHLLHDERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDVA 734
Query: 873 TWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMI 932
T+L + G++ F S RP+PLE G + ++ + N +T + + + ++I
Sbjct: 735 TFLRVEPDGVFYFDSSYRPIPLEQQYIGISDRG-IKQLQRCNDITFTKVSERVGDHQILI 793
Query: 933 FVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIV-----DNIKDSNLKLTIAFG 987
FV SRR+T T DL + + ++ D I+ I+++ LK + +G
Sbjct: 794 FVHSRRETAKTGKDLRDRAVEDQSIDRYIR--DPASREILRATASKQIQNAELKDLLPYG 851
Query: 988 IGFHHAAAEAAQSSALQ 1004
IG HHA + S ++
Sbjct: 852 IGIHHAGLSRSDRSLVE 868
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 180/405 (44%), Gaps = 61/405 (15%)
Query: 156 GTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ-----YNTSGHATIITPHEKLNHYLSLLT 210
GT++Y K Y+ I D+LQ+ GRAG+ + N ++ K +Y L
Sbjct: 1739 GTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVISNKVAKVLLLCHAPKKEYYKMFLN 1798
Query: 211 NQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIG 270
+P+ES+ +D L D N+E+ TI
Sbjct: 1799 EPLPVESH--------------------LDHC-------------LHDQFNSEIVTKTIT 1825
Query: 271 NIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIR 330
+A+ +L++++L+ R+ NP Y +S + L +H + L+EN L++++ I
Sbjct: 1826 KKQDALDYLTWTFLYRRLNQNPNYYNLSG---VSHLHLSEHLSELVENTLVELEQSNCIT 1882
Query: 331 FNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRD 390
++ +LG AS YY+K+ IELF + GI+ +IS A EF L +R
Sbjct: 1883 IQDDQDKVSPLNLGIIASYYYLKYQTIELFGSSLKSTTRRRGIMDIISNAPEFNSLPIRH 1942
Query: 391 EELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIR 450
E L L + + + + KVN+LLQ SR + S L D +++ +N R
Sbjct: 1943 REDQILMKLASHLPQKIDKPNYQEISTKVNVLLQCHFSRESI-SADLYQDQKFILENATR 2001
Query: 451 IIRALFEIT-----LHRNNAIMAARFLKFALMFET----KQWPHETPLRQIKLVTNRGYQ 501
+++A+ ++ L A M + M+++ KQ PH R+I +T++G +
Sbjct: 2002 LLQAIVDVISSNSWLQPAIAAMELSQMITQAMWDSDSVFKQLPHMNK-RRIDAITSQGIE 2060
Query: 502 S--PILKPDILNKIEQRGLT-------VEDLREMPAKEISYMLRD 537
S ++ D ++I+ L+ V+ + P +ISY ++D
Sbjct: 2061 SVFDLMSLDDNSRIQLLDLSQQESNDLVQSFMKYPDIDISYQVQD 2105
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 40/48 (83%)
Query: 45 GVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
GVKSLNR+QS ++D A+ T+ NLL+ APT +GKTNVAMLTI H+I ++
Sbjct: 548 GVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKN 595
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 33/38 (86%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
D A T+LVKL+IIDE+HLLH +RGPV+E +VARTLR I
Sbjct: 674 DRAYTQLVKLIIIDEIHLLHDERGPVLECIVARTLRMI 711
Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 53 QSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGI 112
+SLV D +LI T A N+ T+ I +GT++YN + G + +
Sbjct: 864 RSLVEDLFGDNRIQVLISTATLAWGVNLPAHTV-------IIKGTQIYNPEKG-WCELSP 915
Query: 113 LDVLQIFGRAGRPQYNTSDLG 133
LDV Q+ GRAGRP ++ G
Sbjct: 916 LDVTQMLGRAGRPPFDKEGEG 936
Score = 40.4 bits (93), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 39 GQEVFKGVKSL-NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
+ +FK S+ N IQ+ V++ Y +N+N I APT +GKT A + + KQ+
Sbjct: 1387 AESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISAPTNSGKTVCAEIALIRCFKQN 1441
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVAR 33
+ LLI+DE+HL+ G+ GP +E +V+R
Sbjct: 1520 INLLIVDELHLIGGEYGPTMEIVVSR 1545
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 300/840 (35%), Positives = 476/840 (56%), Gaps = 57/840 (6%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGT++Y+ + G + + DVLQ+ GRAGRPQ++T G IIT H +L +YLSL+ Q
Sbjct: 866 IIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMNQQ 925
Query: 213 IPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNI 272
+PIES F+ LA D LNAEV+LGT+ +I
Sbjct: 926 LPIESQFMRRLA---------------------------------DCLNAEVSLGTVRSI 952
Query: 273 DEAVRWLSYSYLHVRMRINPREY--GISYDEVATDPDLIQHRTTLIENAAQILDKAHMIR 330
++ V WL Y+YL+VRM +P Y G YD+ D L+Q R L+ +AA +L+K ++
Sbjct: 953 EDGVDWLGYTYLYVRMLRSPALYSVGPEYDD---DKYLVQKRADLLHSAAILLEKCKLLV 1009
Query: 331 FNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRD 390
+N ++ L T+LG+ A++YY+ HN + ++ + + + + + S + EF+ + VR+
Sbjct: 1010 YNRQSGTLTATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHIPVRE 1069
Query: 391 EELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIR 450
EE EL L E IPIR + K+N LLQ+ +SR R++ F+LV+D+ YV Q+ R
Sbjct: 1070 EEKVELAKLL-ERVPIPIRERLDEPAAKINALLQSYISRQRLDGFALVADMVYVTQSAGR 1128
Query: 451 IIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDIL 510
I+RA+FEI+L R + +A L M E + WP +PLRQ P +++
Sbjct: 1129 IMRAIFEISLRRGWSSVATLSLDTCKMIEKRLWPTMSPLRQF----------PNCPSEVI 1178
Query: 511 NKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKI 570
++E++ + ++ E+ ++ P G +V P L +E+ + PITR+++++
Sbjct: 1179 RRVEKKEFPWQRYFDLDPAELGELVGVPKEGRRVYNMVQSFPRLSVEAHVQPITRSLVRV 1238
Query: 571 HLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLI-MTI 629
L I + F+W+D T +E FWI VED D D + H E F L KK K +E ++ T+
Sbjct: 1239 ELVINSQFNWDDHLSGT-SEAFWILVEDVDGDRLLHYEQFFLLKKY---KDDEHIVNFTV 1294
Query: 630 PLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQ 689
PL +PLP Y I+ +SDR+L S+ + +SF+ LI+PE P T LL+LQ PVS+L P
Sbjct: 1295 PLLEPLPPCYFIKIVSDRWLHSITKVPLSFQRLIMPEKFPAPTPLLDLQNAPVSSLNNPS 1354
Query: 690 YESLY-KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVV 748
+ SLY F FN IQTQ+F+ +Y T+++V +GAP GSGKT+ AE+ + Q V
Sbjct: 1355 FISLYPNFKFFNKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCAELALLHHWSQEDYGTAV 1414
Query: 749 YIAPLKALVKERVADWKVKFEARLKKKV-VELTGDVTPDIQAISSASVIVTTPEKWDGVS 807
YIAP++ +V R +W KF KV V+LTG+ + D++ I A +I TP +WD +S
Sbjct: 1415 YIAPIQEIVDRRYEEWYGKFSDLGDGKVLVKLTGERSQDLKLIQVADLIFCTPSQWDSLS 1474
Query: 808 RSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867
+ W++ +Q V I DE+ LLG GP+ E+++SR+ +++ ++N+R+VGLS ++AN
Sbjct: 1475 KRWRSMRSIQKVDFYICDELQLLGGFYGPLYEIVISRIRYMAVQLEKNIRVVGLSVSVAN 1534
Query: 868 AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQH-SP 926
A+DL WL + Q ++NF P RP PL +H+ F + M M+KPIY ++K S
Sbjct: 1535 ARDLGEWLGTSPQCIFNFSPKDRPNPLTIHLQSFSITHFPSLMLAMSKPIYRSLKNFISQ 1594
Query: 927 EKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAF 986
K ++F R+ + A DL+T + + ++ + + + D +LK IA+
Sbjct: 1595 RKSTIVFTPDRKVAKQLAFDLVTFSMADEDEYLFSLMENEAFNKVEDAALQQSLKHGIAY 1654
Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 210/414 (50%), Gaps = 41/414 (9%)
Query: 617 VITKSEESLIMTIPLSDPLPNQYLI---RAMSDRYLGSVVQHSMSFKHLIVPE------- 666
V+ K+E + + IPLS L + ++ + + Y+ + MS K + +PE
Sbjct: 419 VVEKAEPAPVSEIPLSKTLTSHKIVPKHQVDLENYVFTEGSRLMSNKAVKLPEGSFRRTG 478
Query: 667 -----LHPPHTNLLEL----QPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNV 717
+H P N L + + + L + +++ N IQ+ ++ + TD N+
Sbjct: 479 KGYEEIHVPAPNKAVLGADERLVKIKELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENI 538
Query: 718 LLGAPTGSGKTIAAEITCFRVFKQ---------CPEAKVVYIAPLKALVKERVADWKVKF 768
LL APTG+GKT A + ++ K+VYIAPLKALV+E V + F
Sbjct: 539 LLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNN----F 594
Query: 769 EARLKK---KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIID 825
RL +V ELTGD Q IS +IVTTPEKWD ++R + +YV V L+IID
Sbjct: 595 SKRLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIID 654
Query: 826 EIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNIT-KQGMYN 884
E+HLL ++RGPVLE IV+R+ T VRLVGLS L N D+A++L++ K+G++
Sbjct: 655 EVHLLHDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFY 714
Query: 885 FRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTA 944
F + RP PL+ G K RM N+ Y + QH+ + V+IFV SR++T TA
Sbjct: 715 FDSTYRPCPLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTA 774
Query: 945 IDLITILACETNPKMWVHTSDAEMDNIV----DNIKDSNLKLTIAFGIGFHHAA 994
I A E + SDA I+ D+ D NLK + +G HHA
Sbjct: 775 -RFIRDKALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAG 827
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 144/340 (42%), Gaps = 43/340 (12%)
Query: 156 GTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPI 215
GT+ Y+ K Y+ I ++LQ+ G + ++T K +Y L +P+
Sbjct: 1700 GTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKFLNEPLPM 1759
Query: 216 ESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEA 275
ES+ WL D +E++ TI + +A
Sbjct: 1760 ESHLQV-----------------------WL----------HDAFVSEISTQTIESKQDA 1786
Query: 276 VRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMRT 335
V WL++SY++ R+ NP YG+ + T + + + L+E L +A +I +
Sbjct: 1787 VDWLTWSYMYRRLVANPAYYGL---QDITHESVSEFLSDLVETTMNDLSEARLITVDDED 1843
Query: 336 RDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHE 395
+L AS+Y I + ++ F +++ G+L +++ A E+EQL +R E
Sbjct: 1844 DSCVALNLAMIASHYGITYITMQTFALSLSERTKMKGLLEIVTSAAEYEQLPIRKYEDIV 1903
Query: 396 LDNLTQECCEIPIRGGS---ENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRII 452
L+ + +P+R + E+ H K ILL SR + LV D +++ V ++
Sbjct: 1904 LERIH---SRLPVRLSNPNYEDPHTKSFILLAAHFSRFELPP-GLVIDQKFILTRVHNLL 1959
Query: 453 RALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQI 492
A + + I R ++ + M W ++PL+QI
Sbjct: 1960 GACVDTLSSEGHLIACIRPMEMSQMVTQALWDRDSPLKQI 1999
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 33 RTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
+ L + + F +SLNRIQS +Y A+ T+EN+L+CAPTGAGKTNVAML I +++++H
Sbjct: 504 KELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKH 563
Query: 93 ISQGTEMYNAKHGCYVHIGILDVL 116
+ + +N ++ V+I L L
Sbjct: 564 LREDLS-FNLQNFKIVYIAPLKAL 586
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 30/36 (83%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLR 36
D++ LV+L+IIDEVHLLH +RGPV+E++VAR R
Sbjct: 641 DLSYVNLVRLVIIDEVHLLHDERGPVLESIVARIFR 676
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 42 VFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYN 101
++ K N+IQ+ V+++ Y TN+++ I AP G+GKT A L + H Q GT +Y
Sbjct: 1358 LYPNFKFFNKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCAELALLHHWSQE-DYGTAVYI 1416
Query: 102 A 102
A
Sbjct: 1417 A 1417
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLG 133
I +GT++Y+ + G + + DVLQ+ GRAGRPQ++T G
Sbjct: 866 IIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEG 906
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 236/757 (31%), Positives = 396/757 (52%), Gaps = 59/757 (7%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGT++Y+ + G + + DVLQ+ GRAGRP+Y+T G IIT + +YLS+L Q
Sbjct: 846 IIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQ 905
Query: 213 IPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNI 272
+PIES FV+ L DNLNAEV G I
Sbjct: 906 LPIESQFVSKLV---------------------------------DNLNAEVVAGNIKCR 932
Query: 273 DEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFN 332
++AV WL+Y+YL+VRM +P Y + ++++D L + R +L+ +A IL + ++ ++
Sbjct: 933 NDAVNWLAYTYLYVRMLASPMLYKVP--DISSDGQLKKFRESLVHSALCILKEQELVLYD 990
Query: 333 MRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEE 392
+ TDLG AS++YI H ++++ + + + + + S + EF+ + VR EE
Sbjct: 991 AENDVIEATDLGNIASSFYINHASMDVYNRELDEHTTQIDLFRIFSMSEEFKYVSVRYEE 1050
Query: 393 LHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRII 452
EL L E IPIR ++ KVN+LLQ+ S+ + F+L SD+ +++QN R++
Sbjct: 1051 KRELKQLL-EKAPIPIREDIDDPLAKVNVLLQSYFSQLKFEGFALNSDIVFIHQNAGRLL 1109
Query: 453 RALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNK 512
RA+FEI L R L TK WP PLRQ K P+ +++ +
Sbjct: 1110 RAMFEICLKRGWGHPTRMLLNLCKSATTKMWPTNCPLRQFKTC-------PV---EVIKR 1159
Query: 513 IEQRGLTVEDLR--EMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKI 570
+E + D E PA E+ +R G +V P + + PITR+V++
Sbjct: 1160 LEASTVPWGDYLQLETPA-EVGRAIRSEKYGKQVYDLLKRFPKMSVTCNAQPITRSVMRF 1218
Query: 571 HLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIP 630
++ I A++ W D N EPF + +ED D D I + + ++ I E +L T
Sbjct: 1219 NIEIIADWIW-DMNVHGSLEPFLLMLEDTDGDSILYYDVLFITPD--IVGHEFTLSFTYE 1275
Query: 631 LS----DPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQ 686
L + LP + + +S+ + S + +SF +P+ PP T LLE + S L
Sbjct: 1276 LKQHNQNNLPPNFFLTLISENWWHSEFEIPVSFNGFKLPKKFPPPTPLLENISISTSELG 1335
Query: 687 QPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAK 746
+ +++F FN IQ+Q+F LY+++++V +G+ G+GKT AE+ ++Q + +
Sbjct: 1336 NDDFSEVFEFKTFNKIQSQVFESLYNSNDSVFVGSGKGTGKTAMAELALLNHWRQN-KGR 1394
Query: 747 VVYIAPLKALVKERVADWKVKFEARLKKKVV-ELTGDVTPDIQAISSASVIVTTPEKWDG 805
VYI P + ++DW +F K++ +L D + +++ ++ + V++ TP +++
Sbjct: 1395 AVYINPSGEKIDFLLSDWNKRFSHLAGGKIINKLGNDPSLNLKLLAKSHVLLATPVQFEL 1454
Query: 806 VSRSWQNRNYVQSVALIIIDEIHLLGED-RGPVLEVIVSRVNFISSYTKRNVRLVGLSTA 864
+SR W+ R +QS+ L+I D+ H + + G V E ++SR+ FI++ ++ +R V LS
Sbjct: 1455 LSRRWRQRKNIQSLELMIYDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNC 1514
Query: 865 LANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGF 901
LANA+D W +TK +YNF PS R PLE++I F
Sbjct: 1515 LANARDFGEWAGMTKSNIYNFSPSERIEPLEINIQSF 1551
Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 173/313 (55%), Gaps = 17/313 (5%)
Query: 697 SHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ----------CPEAK 746
+ NPIQ+++FH + D+N+L+ APTGSGKT A +T + K
Sbjct: 497 TSLNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFK 556
Query: 747 VVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGV 806
+VYIAPLKALV+E+V +++ + A L KV ELTGD + I V+V+TPEKWD
Sbjct: 557 IVYIAPLKALVQEQVREFQRRL-AFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDIT 615
Query: 807 SRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866
+R+ N V+ V L+IIDEIHLL +DRGPVLE IV+R + S Y + R++GLS L
Sbjct: 616 TRNSNNLAIVELVRLLIIDEIHLLHDDRGPVLESIVARTFWASKYGQEYPRIIGLSATLP 675
Query: 867 NAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSP 926
N +D+ +L + K+G++ F S RP PL G + ++ MN Y + +
Sbjct: 676 NYEDVGRFLRVPKEGLFYFDSSFRPCPLSQQFCGIKERNSLKKLKAMNDACYEKVLESIN 735
Query: 927 E-KPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVD----NIKDSNLK 981
E +++FV SR++T TA L A E N + +DA I+ N+ D +L+
Sbjct: 736 EGNQIIVFVHSRKETSRTATWLKNKFA-EENITHKLTKNDAGSKQILKTEAANVLDPSLR 794
Query: 982 LTIAFGIGFHHAA 994
I GIG HHA
Sbjct: 795 KLIESGIGTHHAG 807
Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 145/360 (40%), Gaps = 57/360 (15%)
Query: 156 GTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPI 215
GT +Y+ Y+ I ++L++ G A + +G I+T H +Y L +P
Sbjct: 1684 GTNLYDGAEHKYMPYTINELLEMVGLASGND-SMAGKVLILTSHNMKAYYKKFLIEPLPT 1742
Query: 216 ESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEA 275
ES Y+ ++ + D LN E+A I + +
Sbjct: 1743 ES-------------------------------YLQYI--IHDTLNNEIANSIIQSKQDC 1769
Query: 276 VRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQ-HRTTLIENAAQILDKAHMIRFN-- 332
V W +YSY + R+ +NP YG+ T P I + L+E L ++ I +
Sbjct: 1770 VDWFTYSYFYRRIHVNPSYYGVR----DTSPHGISVFLSNLVETCLNDLVESSFIEIDDT 1825
Query: 333 -------MRTRDLAITDL------GRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQ 379
+ D T++ G AS+Y + I+ F ++ +L ++S
Sbjct: 1826 EAEVTAEVNGGDDEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLST 1885
Query: 380 AHEFEQLKVRDEELHELDNLTQEC-CEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLV 438
A EFE + +R + L L++ P S +V KV +LLQ SR +
Sbjct: 1886 AVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLEL-PVDFQ 1944
Query: 439 SDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNR 498
+DL+ + + V+ +I + +I L N + A + A M W + PLRQI N+
Sbjct: 1945 NDLKDILEKVVPLINVVVDI-LSANGYLNATTAMDLAQMLIQGVWDVDNPLRQIPHFNNK 2003
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 14 DEVHLLHGDRGPVIEALVAR--TLRQIGQEVFKGVK--SLNRIQSLVYDTAYHTNENLLI 69
DE+H+ + PVI+ + +L QE F + SLN IQS V+ A+ + N+LI
Sbjct: 461 DEIHIPAPSK-PVIDYELKEITSLPDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLI 519
Query: 70 CAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVL 116
CAPTG+GKTN+A+LT+ + H + T+ N V+I L L
Sbjct: 520 CAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKAL 566
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 36/43 (83%), Gaps = 2/43 (4%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTL--RQIGQE 41
++A+ ELV+LLIIDE+HLLH DRGPV+E++VART + GQE
Sbjct: 621 NLAIVELVRLLIIDEIHLLHDDRGPVLESIVARTFWASKYGQE 663
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+L+C T A N+ T+ I +GT++Y+ + G + + DVLQ+ GRAGRP+
Sbjct: 827 VLVCTATLAWGVNLPAHTV-------IIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPR 879
Query: 127 YNTSDLG 133
Y+T G
Sbjct: 880 YDTFGEG 886
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 48/79 (60%), Gaps = 6/79 (7%)
Query: 25 PVIEALVARTLRQIGQEVFKGV---KSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVA 81
P++E + T ++G + F V K+ N+IQS V+++ Y++N+++ + + G GKT +A
Sbjct: 1322 PLLENISIST-SELGNDDFSEVFEFKTFNKIQSQVFESLYNSNDSVFVGSGKGTGKTAMA 1380
Query: 82 MLTIAHQIKQHISQGTEMY 100
L + + +Q+ +G +Y
Sbjct: 1381 ELALLNHWRQN--KGRAVY 1397
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=2
SV=2
Length = 1435
Score = 183 bits (465), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 186/336 (55%), Gaps = 26/336 (7%)
Query: 689 QYESLYK-FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---- 743
++ S++K F +FN IQ++ F L +TD N ++ APTGSGKT+ E+ R+ + P
Sbjct: 270 KFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWL 329
Query: 744 EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGD-VTPDIQAISSASVIVTTPEK 802
K+VY+AP+KAL +R DWK KF + ELTGD V D+ I A +I+TTPEK
Sbjct: 330 NIKIVYMAPIKALCSQRFDDWKEKF-GPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEK 388
Query: 803 WDGVSRSWQNRNYVQSVALIIIDEIHLL-GEDRGPVLEVIVSRVNFISSYTK--RN---- 855
WD ++R W++ + VQ V L +IDE+H++ E+RGP LEV+VSR+ + S ++ +N
Sbjct: 389 WDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTA 448
Query: 856 --VRLVGLSTALANAKDLATWLNITKQGMYNFR--PSVRPVPLEVHISGFPGKQYCPRMA 911
+R V +S + NA+D+A WL+ ++ + S RPV L+ + GFP
Sbjct: 449 IPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFK 508
Query: 912 ---KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEM 968
+N I + I+ +S +KP ++F ++R+ + A ++L + M V +
Sbjct: 509 FDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAA----SVLVKDAKFIMTVEQKQ-RL 563
Query: 969 DNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQ 1004
+++DS L+ + G +HHA E + ++
Sbjct: 564 QKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVE 599
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 105/418 (25%), Positives = 179/418 (42%), Gaps = 75/418 (17%)
Query: 165 GCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLA 224
G + D+LQ+ GRAGRPQ++T+ A I+T + Y+ +L + +ES+ +L
Sbjct: 638 GLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLI 697
Query: 225 DNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYL 284
++LNA E+ L TI +++ AV W+ + L
Sbjct: 698 EHLNA---------------------------------EIVLHTITDVNIAVEWIRSTLL 724
Query: 285 HVRMRINPREYGISYDEVATDPDLIQHR-TTLIENAAQILDKAHMIRFNMRTRDLAITDL 343
++R NP YG + + D I+ + L L +I+ + + T+
Sbjct: 725 YIRALKNPSHYGFA---SGLNKDGIEAKLQELCLKNLNDLSSLDLIKMD-EGVNFKPTEA 780
Query: 344 GRTASNYYIKHNDIELF-TEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQE 402
GR + YYI ++ F T + L D ++++I+ EF +++R E L+ L ++
Sbjct: 781 GRLMAWYYITFETVKKFYTISGKETLSD--LVTLIAGCKEFLDIQLRINEKKTLNTLNKD 838
Query: 403 CCEI----PIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEI 458
I P+ G + KVN L+Q L + F+L D + ++ RI R L
Sbjct: 839 PNRITIRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWL--- 895
Query: 459 TLHRNNAIMAARFLKFALM---------FETKQWPHETPLRQIKLVTNRGYQSPILKPDI 509
+ +AA+ KFA++ F K W E L K + G +
Sbjct: 896 -----SDFVAAQEKKFAVLLNSLILAKCFRCKLW--ENSLHVSKQLEKIGIT-------L 941
Query: 510 LNKIEQRGLT-VEDLREMPAKEISYML-RDPHVGDKVKQCAWEIPLLEIESKLLPITR 565
N I GLT + + E A+E+ +L R P G ++K+ +P E+ K+ ITR
Sbjct: 942 SNAIVNAGLTSFKKIEETDARELELILNRHPPFGTQIKETVMYLPKYEL--KVEQITR 997
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
+ +FK N IQS +D +T+ N +ICAPTG+GKT V L I
Sbjct: 272 RSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAI 317
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 1 DVALTELVKLLIIDEVHLLHGD-RGPVIEALVAR--TLRQIGQ 40
D +L +LV+L +IDEVH++ + RGP +E +V+R T++ + Q
Sbjct: 398 DNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQ 440
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/344 (33%), Positives = 182/344 (52%), Gaps = 27/344 (7%)
Query: 681 PVSALQQPQYESLYK-FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVF 739
PV+ + + Q+ +++K F +FN IQ++ L ++D N +L APTGSGKT+ E+ R+
Sbjct: 132 PVTEIPK-QFRTVFKEFPYFNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRLL 190
Query: 740 KQCP----EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDV-TPDIQAISSAS 794
Q P K+VY+AP+KAL +R DWK KF + ELTGD D+ I A
Sbjct: 191 MQVPMPWTNVKIVYMAPIKALCGQRYDDWKAKF-GPVGLNCKELTGDTEMDDLFEIQHAH 249
Query: 795 VIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED-RGPVLEVIVSRVNFISSYTK 853
+I+TTPEKWD ++R W++ VQ V L +IDE+H+L E+ RG LEV+VSR+ I S +
Sbjct: 250 IIMTTPEKWDSMTRKWKDNTLVQLVRLFLIDEVHILKEENRGATLEVVVSRMKTIYSLSH 309
Query: 854 RN--------VRLVGLSTALANAKDLATWLNITKQG--MYNFRPSVRPVPLEVHISGFPG 903
+ +R V +S + N +D+A WL+ S RPV L + GFP
Sbjct: 310 LSEDRKAFIPMRFVAVSATIPNVEDIADWLSDENSPGVCMKMDESSRPVKLRKVVLGFPC 369
Query: 904 KQYCPRMA---KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMW 960
+N I I+ +S +P ++F S+R+ + A +IL + M
Sbjct: 370 STKQSEFKFDLTLNYKIANIIQTYSDGRPTLVFCSTRKGVQQAA----SILTKDAKFVMS 425
Query: 961 VHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQ 1004
+ + ++IKDS L+ + +G+G+HHA + + ++
Sbjct: 426 IE-HKQRLQKCANSIKDSKLRDVLQYGVGYHHAGVDISDRKVIE 468
Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 112/454 (24%), Positives = 199/454 (43%), Gaps = 76/454 (16%)
Query: 165 GCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLA 224
G + D+LQ+ GRAGRPQ++++ A I+T Y+ +L IES+ +L
Sbjct: 507 GMFQEYSETDILQMIGRAGRPQFDSTATAVIMTRLSTKEKYVHMLDGADTIESSLHKHLV 566
Query: 225 DNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYL 284
++LNA E+AL TI ++ A+ W+ ++L
Sbjct: 567 EHLNA---------------------------------EIALHTITDVKVALEWIRSTFL 593
Query: 285 HVRMRINPREYGIS--YDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITD 342
++R NP YG S D++ + L + L L +I+ + + T+
Sbjct: 594 YIRALKNPAYYGFSEGLDKIGIEAKLQE----LCLKNLNDLSSLGLIKMDEEI-NFKPTE 648
Query: 343 LGRTASNYYIKHNDIELF-TEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQ 401
G+ + YYI N +LF T T+ L + ++S+IS EF +++R E L+ L +
Sbjct: 649 TGKLMALYYIAFNTAKLFHTIRGTETLAE--LVSLISSCSEFSDVQLRANERRVLNTLNK 706
Query: 402 ECCEIPIR----GGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFE 457
+ + IR G + KVN L+Q L V FSL D+ + ++ R+ + L E
Sbjct: 707 DKNRVTIRYPMEGKIKTKEMKVNCLIQAHLGCILVQDFSLTQDISKIFRHGTRLAKCLSE 766
Query: 458 ITLHRNNAIMAARFLKFALM---FETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIE 514
+ N A FL ++ F++K W + + + + Q + + N +
Sbjct: 767 FLALQENKFSA--FLNALILTKCFKSKLWENSSHISK---------QLEKIGVTLANAMV 815
Query: 515 QRGLTV-EDLREMPAKEISYML-RDPHVGDKVKQCAWEIPLLEIESKLLPITR-TVLKIH 571
GLT + + + A+E+ ++ R P G+++K+ +P EI+ + L R T ++
Sbjct: 816 NAGLTTFKKIEDTNARELELIVNRHPPFGNQIKESVAHLPKYEIKFQQLAKYRATTAEVV 875
Query: 572 LTI-KANFSWNDKNKSTYAEPFWIWVEDPDSDFI 604
LT+ NF K ++ PDS F+
Sbjct: 876 LTVLLTNFKQLQKKRTA-----------PDSHFV 898
Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 42 VFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQ 91
VFK N IQS + +++ N ++CAPTG+GKT + L I + Q
Sbjct: 143 VFKEFPYFNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRLLMQ 192
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 168/332 (50%), Gaps = 29/332 (8%)
Query: 690 YESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPE----A 745
+ ++KF+ FN +Q++ F +Y ++ N ++ +PTGSGKT+ E+ R+ K+
Sbjct: 130 FRGVFKFTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKETNSDTNNT 189
Query: 746 KVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVT-PDIQAISSASVIVTTPEKWD 804
K++YIAP K+L E +W F + + V LT D + + + ++I+TTPEKWD
Sbjct: 190 KIIYIAPTKSLCYEMYKNW---FPSFVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWD 246
Query: 805 GVSRSWQNRNYV-QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLST 863
++R W + + + + V L+++DEIH + E RG LEVI++R+N + +N+R V LS
Sbjct: 247 LLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLEVILTRMNTMC----QNIRFVALSA 302
Query: 864 ALANAKDLATWLNITKQ---GMYNFRPSVRPVPLEVHISG--FPGKQYCPRMAKMNKPIY 918
+ N +DLA WL + + +F S R V L + G F K + A N +
Sbjct: 303 TVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGYSFNCKNDFQKDAIYNSKLI 362
Query: 919 TAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDS 978
I++H+ +PV+IF +R T TA L+ + K H N D
Sbjct: 363 EIIEKHADNRPVLIFCPTRASTISTAKFLLNNHIFSKSKKRCNH-----------NPSDK 411
Query: 979 NLKLTIAFGIGFHHAAAEAAQSSALQMPKLAA 1010
L + GI FHHA +A++ LA
Sbjct: 412 ILNECMQQGIAFHHAGISLEDRTAVEKEFLAG 443
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 111/468 (23%), Positives = 195/468 (41%), Gaps = 94/468 (20%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT+ +N+ LDVLQ+ GRAGRPQ+ T G A I+T + Y +L+
Sbjct: 468 KGTKSWNSSE--IQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMKQTYENLIHGTDV 525
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDE 274
+ES+ NL ++L AE +L T+ +I+ AV W
Sbjct: 526 LESSLHLNLIEHLAAETSLETVYSIETAVNW----------------------------- 556
Query: 275 AVRWLSYSYLHVRMRINPREYG-----ISYDEVATDPDLIQHRTTLIENAAQILDKAHMI 329
L ++ +VR NP Y +S+ V D + Q L++ L K +I
Sbjct: 557 ----LRNTFFYVRFGKNPAAYQEVNRYVSFHSVE-DSQINQFCQYLLDT----LVKVKII 607
Query: 330 RFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVR 389
++ + T G + +YI ++ F + K L GIL++++ + EF ++VR
Sbjct: 608 --DISNGEYKSTAYGNAMTRHYISFESMKQFI-NAKKFLSLQGILNLLATSEEFSVMRVR 664
Query: 390 DEELHELDNLTQECCEIPI--------RGGSE---NVHGKVNILLQTLLSRGRVNSF--- 435
H L +E P+ + S+ V KV++L+Q L S+
Sbjct: 665 ----HNEKKLFKEINLSPLLKYPFLTEKKQSQIIDRVSQKVSLLIQYELGGLEFPSYEGA 720
Query: 436 -----SLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETP-- 488
+LV D V ++ R+++ + + + +++ L W + TP
Sbjct: 721 SKLHQTLVQDKFLVFRHCFRLLKCMVDTFIEKSDGTSLKNTLFLLRSLNGHCWEN-TPMV 779
Query: 489 LRQIKLVTNRGYQSPILKPDILNKIEQRGLT-VEDLREMPAKEISYMLRDPHVGD--KVK 545
LRQ+K + G S + ++ + G+T +E++ + +I Y L + +G+ K+K
Sbjct: 780 LRQLKTI---GLVS-------VRRLIRHGITNLEEMGHLSDTQIEYYL-NLKIGNGIKIK 828
Query: 546 QCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFW 593
+P L I +KL ++ LT K S +T+ W
Sbjct: 829 NDISLLPCLNIRTKLENCKIENEELWLTFKVEIS------ATFKSSIW 870
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 41 EVFKGV---KSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQ 91
+ F+GV N++QS + + Y +NEN +I +PTG+GKT + L I IK+
Sbjct: 128 DSFRGVFKFTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKE 181
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 152/322 (47%), Gaps = 42/322 (13%)
Query: 683 SALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCF-RVFKQ 741
S L++ ES Y P Q + N L+ PT SGKT+ AEI R+ Q
Sbjct: 14 STLKERGIESFY------PPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ 67
Query: 742 CPEAKVVYIAPLKALVKER---VADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVT 798
K VYI PLKAL +E+ DW+ ++ +V TGD + + +I+
Sbjct: 68 G--GKAVYIVPLKALAEEKFQEFQDWE-----KIGLRVAMATGDYDSKDEWLGKYDIIIA 120
Query: 799 TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG-EDRGPVLEVIVSRVNFISSYTKRNVR 857
T EK+D + R ++++ V +++ DEIHL+G DRG LEVI+ ++ +
Sbjct: 121 TAEKFDSLLR--HGSSWIKDVKILVADEIHLIGSRDRGATLEVIL-------AHMLGKAQ 171
Query: 858 LVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLE--VHISGFPGKQ--YCPRMAKM 913
++GLS + N ++LA WLN RPV L V GF + R +
Sbjct: 172 IIGLSATIGNPEELAEWLNAEL-----IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSW 226
Query: 914 NKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLI-TILACETNPKMWVHTSDAEMDNIV 972
+ +Y AI++ +K +IFV+ RR+ A++L + + T P+ + + D++
Sbjct: 227 EELVYDAIRK---KKGALIFVNMRRKAERVALELSKKVKSLLTKPE--IRALNELADSLE 281
Query: 973 DNIKDSNLKLTIAFGIGFHHAA 994
+N + L I G+ FHHA
Sbjct: 282 ENPTNEKLAKAIRGGVAFHHAG 303
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 41/170 (24%)
Query: 169 HIGILDVLQIFGRAGRPQYNTSGHATIIT----PHEKLNHYL--------SLLTNQIPIE 216
I I++V Q+ GRAGRP+Y+ G I++ P E +NHY+ S L+N+ +
Sbjct: 356 RIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLR 415
Query: 217 SNFVANLA--DNLNAEVALGTIGN------------IDEAVRWLIIYINFVANLADNLNA 262
S +A +A E L I N ++E +R N + L +N
Sbjct: 416 SQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIR------NILYFLLENEFI 469
Query: 263 EVALGTIGNIDEAVRWLSYSYLHVRMRINP---REYGISYDEVATDPDLI 309
E++L ++ +R LS ++ I+P + + +EV DP+ I
Sbjct: 470 EISL------EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPI 513
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 20/94 (21%)
Query: 68 LICAPT-GAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
++ PT AG A I I ++ G E I I++V Q+ GRAGRP+
Sbjct: 324 VVATPTLSAGINTPAFRVIIRDIWRYSDFGME----------RIPIIEVHQMLGRAGRPK 373
Query: 127 YN---------TSDLGRTASNYYIKHNDIELFTE 151
Y+ TSD R N+YI +LF++
Sbjct: 374 YDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQ 407
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/296 (28%), Positives = 149/296 (50%), Gaps = 27/296 (9%)
Query: 711 YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEA 770
+ N+++ PT +GKT+ A + FK+ + K +YI PL++L E+ + E
Sbjct: 34 FRKGKNIMVSVPTAAGKTLIAYSAIYETFKK--KLKSIYIVPLRSLAMEKYEELSRLREL 91
Query: 771 RLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL 830
++ K+ D TPD I V++ T EK D + + ++ V L++IDEIH++
Sbjct: 92 GMRVKLSIGNYDDTPDF--IKRYDVVILTSEKADSLMH--HDPYMMEEVGLMVIDEIHMI 147
Query: 831 GED-RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSV 889
G++ RGP LE +++ +++ T R++ LS ++NA ++A WLN + + S
Sbjct: 148 GDEYRGPTLETVITTARYVNPET----RIIALSATVSNASEIAEWLNASL-----IKSSF 198
Query: 890 RPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPE-KPVMIFVSSRRQTRLTAIDLI 948
RPVPL+V I + + + A+ + I +K+ + V+IFVSSR++ A +L
Sbjct: 199 RPVPLKVGIL-YRNRLFLDGDARSDVDINLLVKETVDDGGQVLIFVSSRKRAEDMAKNLS 257
Query: 949 TILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQ 1004
+ + K V + DA N+ D L + G+ FHHA Q S ++
Sbjct: 258 QLFDPINDLK--VSSEDA-------NVYDDLLNEMLPHGVSFHHAGLSNEQRSFIE 304
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 151/319 (47%), Gaps = 40/319 (12%)
Query: 685 LQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCF-RVFKQCP 743
L++ E LY P Q + N+L+ PT SGKT+ AEI ++ ++
Sbjct: 16 LRERGIEELY------PPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAIANKLLEEG- 68
Query: 744 EAKVVYIAPLKALVKERV---ADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTP 800
K VYI PLKAL +E+ DW+ RL KV TGD + + +I+ T
Sbjct: 69 -GKAVYIVPLKALAEEKFREFKDWE-----RLGLKVAMATGDYDSKDEWLGKYDIIIATA 122
Query: 801 EKWDGVSRSWQNRNYVQSVALIIIDEIHLLG-EDRGPVLEVIVSRVNFISSYTKRNVRLV 859
EK+D + R ++++ V +++IDEIHL+G DRG LE I++++ +++
Sbjct: 123 EKFDSLLR--HGSSWIRDVKMLVIDEIHLIGSRDRGATLEFIITQM-------LGRAQII 173
Query: 860 GLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLE--VHISGFPGKQ--YCPRMAKMNK 915
GLS + N ++LA WLN R RPV L V GF + R +
Sbjct: 174 GLSATIGNPEELAEWLNAKL-----IRSDWRPVKLRKGVFYQGFVFWEDGGSERYNSWEE 228
Query: 916 PIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNI 975
+Y A+K+ K ++FV+ RR+ TA++L + + K + +++ +N
Sbjct: 229 LVYDAVKKG---KGALVFVNMRRKAEKTALELAKKVKNYLDRKELRELREL-AESLEENP 284
Query: 976 KDSNLKLTIAFGIGFHHAA 994
+ L + G+ FHHA
Sbjct: 285 TNEKLAKALLSGVAFHHAG 303
Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 12/68 (17%)
Query: 169 HIGILDVLQIFGRAGRPQYNTSGHATIITPHEK----LNHYL--------SLLTNQIPIE 216
I +L+V Q+ GRAGRP+Y+ G A I++ E+ ++HY+ S L+N+ +
Sbjct: 356 RIPVLEVQQMMGRAGRPRYDEVGEAIIVSTTEEPSLVIDHYIKGKPEKLFSQLSNESILR 415
Query: 217 SNFVANLA 224
S +A +A
Sbjct: 416 SQILALIA 423
Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 31 VARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQI 89
V+ +++I +E +G++ L Q+ + ENLL+ PT +GKT +A + IA+++
Sbjct: 8 VSEKIKEILRE--RGIEELYPPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAIANKL 64
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 146/306 (47%), Gaps = 32/306 (10%)
Query: 697 SHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCF-RVFKQCPEAKVVYIAPLKA 755
S P Q + N L+ PT SGKT+ AEI R+ K+ K VY+ PLKA
Sbjct: 22 SELYPPQAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRLLKEG--GKAVYLVPLKA 79
Query: 756 LVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNY 815
L +E+ ++K E LK V TGD + + +I+ T EK+D + R ++
Sbjct: 80 LAEEKFKEFKDWEELGLK--VAMATGDYDSKDEWLGGYDIIIATAEKFDSLLR--HGSSW 135
Query: 816 VQSVALIIIDEIHLLG-EDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATW 874
+++V ++++DEIHL+G DRG LE I++++ +++GLS + N ++LA W
Sbjct: 136 IRNVKVLVVDEIHLIGSRDRGATLEFIITQM-------LNRAQIIGLSATIGNPEELAEW 188
Query: 875 LNITKQGMYNFRPSVRPVPLE--VHISGF----PGKQYCPRMAKMNKPIYTAIKQHSPEK 928
LN + RPV L V GF GK + + +Y AIK+ K
Sbjct: 189 LNAKL-----IKSDWRPVKLRRGVFYQGFVFWEDGK--TEKFNSWEELVYDAIKRS---K 238
Query: 929 PVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGI 988
++FV+ RR+ TA++L + K + +++ +N + L + G+
Sbjct: 239 GSLVFVNMRRKAEKTALELSKKIRNFLTKKELRELKEL-AESLEENPTNEKLAKALQGGV 297
Query: 989 GFHHAA 994
FHHA
Sbjct: 298 AFHHAG 303
Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 169 HIGILDVLQIFGRAGRPQYNTSGHATIITPHEK 201
I IL++ Q+ GRAGRP+Y+ G A I++ E+
Sbjct: 356 RIPILEIQQMMGRAGRPKYDEVGEAIIVSTTEE 388
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=Ta0835 PE=3 SV=1
Length = 674
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 144/292 (49%), Gaps = 29/292 (9%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
NV++ PT +GKT+ A + F++ K +YI PL++L E+ ++ + LK K
Sbjct: 39 NVVVSVPTAAGKTLIAYSAIYETFQR--NLKSIYIVPLRSLAMEKFSELSRLRDLGLKVK 96
Query: 776 VVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYV-QSVALIIIDEIHLLG-ED 833
+ D +PD I ++ T EK D + + Y+ V L+++DEIH +G E
Sbjct: 97 MSIGDYDDSPDF--IKRYDAVILTSEKADSL---LHHDPYILNDVGLLVLDEIHTIGDES 151
Query: 834 RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVP 893
RGP LE + S I+ Y +VR++ LS ++NA +LA+WL+ + + RPVP
Sbjct: 152 RGPTLETVAS----IARYVNPDVRILALSATVSNAMELASWLDASL-----IKSDFRPVP 202
Query: 894 LEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEK-PVMIFVSSRRQTRLTAIDLITILA 952
L+ I + + Y + I I++ + V++FVSSR++ TA DL I
Sbjct: 203 LKTGIL-YRDQLYLDGKRRSGVSINQIIRETVEDNGQVLMFVSSRKKAEDTARDLAQIFG 261
Query: 953 CETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQ 1004
+ N K+ +SD N+ D L + G+ FHHA Q + ++
Sbjct: 262 SDANIKI---SSDET------NVYDDMLNEILPRGVAFHHAGLSNDQRAFIE 304
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 155/317 (48%), Gaps = 41/317 (12%)
Query: 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEA-KVVYIAPLKALVKE 759
P Q + N++L PT SGKT+ +EI V K E K VY+ PLKAL +E
Sbjct: 26 PPQAEALKSGVLEGKNLVLAIPTASGKTLVSEIVM--VNKLLSEGGKAVYLVPLKALAEE 83
Query: 760 RVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSV 819
+ ++K ++E L +V TGD + + +IV T EK+D + R ++++ V
Sbjct: 84 KYREFK-EWEV-LGLRVAATTGDYDSTDEWLGRYDIIVATAEKFDSLLR--HGASWIKDV 139
Query: 820 ALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNIT 878
L++ DE+HL+G DRG LE+I+ ++ +++ LS + NA++LA WL+ +
Sbjct: 140 KLVVADEVHLIGSYDRGATLEMIL-------THMLGKAQILALSATVGNAEELAEWLDAS 192
Query: 879 KQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMN-------KPIYTAIKQHSPEKPVM 931
+ ++R P+E+ F Q K++ + A+K+ K +
Sbjct: 193 LV-VSDWR------PVELRKGVFHLGQLFWEDGKIDHYPENWESLVLDAVKKG---KQAL 242
Query: 932 IFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDS----NLKLTIAFG 987
+FV++RR AI L + ++ K+ ++ ++ +I+D+ LK + G
Sbjct: 243 VFVNTRRSAEKEAISLSSKVS-----KLLTKPETRRLEELISSIEDNPTTEKLKRALKGG 297
Query: 988 IGFHHAAAEAAQSSALQ 1004
+ FHHA A+ + ++
Sbjct: 298 VAFHHAGLSRAERTLIE 314
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 167 YVHIGILDVLQIFGRAGRPQYNTSGHATIIT----PHEKLNHYL--------SLLTNQIP 214
+ I +L++ Q+ GRAGRP+Y+ G A I+ P + ++ Y+ S+L N+
Sbjct: 758 WTDIPVLEIQQMMGRAGRPKYDKVGEAIIVARTEDPKKLIDRYIHGKPEKLFSMLANEQA 817
Query: 215 IESNFVANLADNLNAE 230
S +A L N E
Sbjct: 818 FRSQVLA-LITNFGVE 832
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 145/323 (44%), Gaps = 51/323 (15%)
Query: 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758
NP QT+ N +LL +PTGSGKT+ AE+ F K +Y+ PL+AL
Sbjct: 24 LNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIIS-FLLKNGGKAIYVTPLRALTN 82
Query: 759 ER---VADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNR-N 814
E+ DW+ + KV +GD D + + +I+TT EK D + W++R +
Sbjct: 83 EKYLTFKDWE-----SIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSL---WRHRPD 134
Query: 815 YVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLAT 873
++ ++DE+H L + +RGPV+E + R +RN L+ LS ++N K +A
Sbjct: 135 WLNEANYFVLDELHYLNDPERGPVVESVTIRAK------RRN--LLALSATISNYKQIAK 186
Query: 874 WLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIY---TAIKQH------ 924
WL G + RPVPL G Y R K ++ TA K H
Sbjct: 187 WL-----GAEPVATNWRPVPL------MEGVMYPERKKKEYTILFRDNTARKVHGDDAII 235
Query: 925 -------SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKD 977
S V++F +SR+ TA+ + + + + + ++D+I + D
Sbjct: 236 AYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDEKAISEILKQLDDIEEGGSD 295
Query: 978 SN--LKLTIAFGIGFHHAAAEAA 998
LK I+ G+ +HHA A
Sbjct: 296 EKELLKSLISKGVAYHHAGLSKA 318
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 145/313 (46%), Gaps = 39/313 (12%)
Query: 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758
NP QT+ D +L+ PT SGKT+ AE+ K +Y+ PL+AL
Sbjct: 27 LNPPQTEAVKKGLIEDKRLLITTPTASGKTLMAELGMISHLLN-KGGKAIYVTPLRALTS 85
Query: 759 ERVA---DWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNY 815
E+ + DW+ +L KV +GD D + + +IVTT EK D + R + +
Sbjct: 86 EKYSTFKDWE-----KLGFKVGVTSGDYDTDDPWLRNFDIIVTTYEKLDSLWR--HSAEW 138
Query: 816 VQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATW 874
++ + ++DE H + + DRGPV+E + R KR ++ LS + NAKD+A W
Sbjct: 139 LKDIDYFVLDEFHYMNDGDRGPVVEGVAVR-------AKRQGTILALSATIGNAKDVAKW 191
Query: 875 LNITKQGMYNFRPSVRPVPLEVHISGFPGKQ--------YCPRMAKMNKPI--YTAIKQH 924
LN + RPVPL+ + GK+ K + PI YT +
Sbjct: 192 LNADIVAT-----NWRPVPLKEGVMYSEGKKGHIILYSDGTTNKLKGDDPIIAYT-LDIL 245
Query: 925 SPEKPVMIFVSSRRQTRLTAIDLITILA-CETNPKMWVHTSD--AEMDNIVDNIKDSNLK 981
S V++F SSR+ TA+ + + + + K + T++ E+++ N K+
Sbjct: 246 SKGGQVIVFRSSRKYAETTAMKISQYMNFVKLDDKKLLETAERIKEVEDAGSNEKEVLYN 305
Query: 982 LTIAFGIGFHHAA 994
L I G+ FHHA
Sbjct: 306 L-IVRGVAFHHAG 317
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 156/348 (44%), Gaps = 58/348 (16%)
Query: 664 VPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPT 723
VPE P H L+ E LY P Q + N++ PT
Sbjct: 9 VPEWLPDH-------------LRDDGIEELY------PPQAEAVEAGVTEGENLVASIPT 49
Query: 724 GSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDV 783
SGKT+ AE+ + K +YI PL+AL E+ AD++ +FE + + TG+
Sbjct: 50 ASGKTLIAELAMLSSVARG--GKALYIVPLRALASEKQADFE-EFE-QYGLDIGVSTGNY 105
Query: 784 TPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIV 842
+ ++ ++V T EK D + R+ + +++ + ++ DE+HL+ + +RGP LEV +
Sbjct: 106 ESEGGWLADKDIVVATSEKVDSLVRN--DAPWIEDLTCVVTDEVHLVDDGERGPTLEVTL 163
Query: 843 SRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLE--VHISG 900
+++ ++ +++ V LS + NA+ LATWL+ G+ + RP+ L+ VH
Sbjct: 164 AKLRRLNP----DLQTVALSATIGNAEALATWLDA---GLVD--SDWRPIDLQKGVHYGQ 214
Query: 901 F----PGKQYCPRMAKMNKPIYTAI---KQHSPEKPVMIFVSSRRQTRLTAIDLITILAC 953
G Q R++ N TA + ++FV+SRR A LA
Sbjct: 215 ALHLEDGSQQ--RLSVQNNEKQTAAIVRDTLEDDGSTLVFVNSRRNAEAAA----GRLAN 268
Query: 954 ETNPKMWVHTSDAEMDNIVDNIKD-------SNLKLTIAFGIGFHHAA 994
P + D ++ +I + I+D +L +A G FHHA
Sbjct: 269 TVRPHLSTEERD-QLADIAEEIRDVSDTETSDDLADAVADGAAFHHAG 315
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 144/348 (41%), Gaps = 51/348 (14%)
Query: 675 LELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEIT 734
+++Q L + + QY L P Q N+L+ PT SGKT+ AE+
Sbjct: 1 MQIQDLAIPEPLRQQYLGL-GIRELYPPQAACVERGLLDGKNLLVAIPTASGKTLIAEMA 59
Query: 735 CFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSAS 794
R K +YI PLKAL E+ ++ K KV TGD+ A+
Sbjct: 60 MHRHIANG--GKCLYIVPLKALASEKYEEFGNK-----GVKVGLSTGDLDRRDDALGKND 112
Query: 795 VIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL-GEDRGPVLEVIVSRVNFISSYTK 853
+IV T EK D + R+ ++ + L++IDEIHL+ DRGP LE++++++
Sbjct: 113 IIVATSEKVDSLLRN--GARWIPDITLVVIDEIHLIDSPDRGPTLEMVIAKMR----SKN 166
Query: 854 RNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKM 913
++L+GLS + N K LA WL+ S RPV L + Q+ RM
Sbjct: 167 PGMQLIGLSATIGNPKVLAGWLDAEL-----VTSSWRPVDLRQGVFYDNRIQFAERM--- 218
Query: 914 NKPIYTAIKQH----------SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHT 963
+P+ K + + ++FVSSRR A + +
Sbjct: 219 -RPVKQVSKNYDDLNLCLDTIAEGGQCLVFVSSRRNAE----------AFAKRAAGAIKS 267
Query: 964 SDAEMDNIVDNIKDS-------NLKLTIAFGIGFHHAAAEAAQSSALQ 1004
DA + + + + L +A G FHHA + S ++
Sbjct: 268 EDAALAACAERLLEGTPTEMVKTLAACVAKGAAFHHAGLSRKERSIVE 315
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 141/304 (46%), Gaps = 27/304 (8%)
Query: 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKER 760
P Q + N+L PT SGKT+ AE+ + ++ K +YI PL+AL E+
Sbjct: 26 PPQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIREG--GKALYIVPLRALASEK 83
Query: 761 VADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVA 820
+ K A KV TGD+ + +IV T EK D + R+ +++ +
Sbjct: 84 FE--RFKELAPFGIKVGISTGDLDSRADWLGVNDIIVATSEKTDSLLRN--GTSWMDEIT 139
Query: 821 LIIIDEIHLL-GEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK 879
+++DEIHLL ++RGP LEV ++++ ++ +V++V LS + NA+++A WL
Sbjct: 140 TVVVDEIHLLDSKNRGPTLEVTITKLMRLNP----DVQVVALSATVGNAREMADWLGAAL 195
Query: 880 QGMYNFRPS-VRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRR 938
+ +RP+ + L FPG Q + + + + E ++F SSRR
Sbjct: 196 V-LSEWRPTDLHEGVLFGDAINFPGSQKKIDRLEKDDAVNLVLDTIKAEGQCLVFESSRR 254
Query: 939 Q----TRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIA----FGIGF 990
+ + + IL + K+ A + V++ +++ + +A G+ F
Sbjct: 255 NCAGFAKTASSKVAKILDNDIMIKL------AGIAEEVESTGETDTAIVLANCIRKGVAF 308
Query: 991 HHAA 994
HHA
Sbjct: 309 HHAG 312
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 30/335 (8%)
Query: 675 LELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEIT 734
+ ++ LP+ +L + S P Q + N+L+ + T SGKT+ AE+
Sbjct: 1 MNIEELPLPSLLRDFLISKRGIRTLYPPQEEAIRAGLLNGENILMVSATASGKTLLAEVA 60
Query: 735 CFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSAS 794
+ K + PLKAL E++ D+ E L +V TGD + + + S
Sbjct: 61 AVNNV-LVNDKKSLVAVPLKALAFEKLNDFNTYSE--LGIRVAASTGDYNSEDKWLGSYD 117
Query: 795 VIVTTPEKWDGVSR---SWQNRNYVQSVALIIIDEIHLLGED-RGPVLEVIVSRVNFISS 850
VI+TT EK D + R SW + +V +IIDEIH + +D RGP++E IV+++ ++
Sbjct: 118 VIITTYEKLDSLLRLKPSW-----IWNVGQLIIDEIHFINDDERGPIIESIVAKLRMLN- 171
Query: 851 YTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRP-SVRPVPLEVHISGFPGKQYCPR 909
N +++GLS + N ++LA WLN K ++RP S+R + +
Sbjct: 172 ---LNPQIIGLSATIGNPEELANWLN-AKLVKSDWRPVSLREGVYHKGVVTYVNDGEKRI 227
Query: 910 MAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMD 969
+ + I + + V++F SSR+ A L + C ++P ++ +A
Sbjct: 228 SGQGDSLINLTVDTLNDGGQVLVFSSSRQGAVRIARKLAEYI-C-SSPVRYIDPGEA--G 283
Query: 970 NIVDNIKDSN--------LKLTIAFGIGFHHAAAE 996
+ + +++++ L I G+ FHHA E
Sbjct: 284 KLAEEVRETSSSRILAEELTGLIKCGVSFHHAGLE 318
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 17/182 (9%)
Query: 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVF----KQCPEAKVVYIAPLKAL 756
P + + L + N L+ PT SGKT+ E+ K K ++I PLKAL
Sbjct: 19 PQKKALERGLLDKNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVPLKAL 78
Query: 757 VKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNR-NY 815
E+ ++K K+E R ++ GD D + +S +I+TT EK D + W+++ ++
Sbjct: 79 ASEKYEEFKSKYE-RYGLRIALSIGDYDED-EDLSKYHLIITTAEKLDSL---WRHKIDW 133
Query: 816 VQSVALIIIDEIHLLG-EDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATW 874
+ V+++++DEIHL+ E RG LE++++++ + NV+++GLS + N +LA W
Sbjct: 134 INDVSVVVVDEIHLINDETRGGTLEILLTKLK------EFNVQIIGLSATIGNPDELAEW 187
Query: 875 LN 876
LN
Sbjct: 188 LN 189
Score = 40.8 bits (94), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 169 HIGILDVLQIFGRAGRPQYNTSGHATIITPHEK--LNHYLSLLTNQIPIESNFV--ANLA 224
+I I+++ Q GRAGRP + G I+ +++ L Y +L PI S A L
Sbjct: 864 YIPIMEIQQCIGRAGRPGLDPYGEGIIVAKNDRDYLRAYQALTQKPEPIYSKLSNQAVLR 923
Query: 225 DNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYL 284
L +A G I + + + W I F A+ NL EVA NI+E +R+L +
Sbjct: 924 TQLLGLIATGEIRD-EYDLEWF-IRNTFYAHQYGNLR-EVA----KNINEVIRFLEENEF 976
Query: 285 HVRMRINPREYGISYDEVATDP 306
+ P E G E+ DP
Sbjct: 977 IIDFM--PTELGKRVSELYIDP 996
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 145/313 (46%), Gaps = 40/313 (12%)
Query: 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758
NP Q++ +L+ +PT SGKT+ AE+ + K +YI PL+AL
Sbjct: 27 LNPPQSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMIN-YLLSKGGKAIYITPLRALTN 85
Query: 759 ER---VADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNR-N 814
E+ DW+ L K +GD D + + +IVTT EK D + W+++
Sbjct: 86 EKYNTFKDWET-----LGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDSL---WRHKAK 137
Query: 815 YVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLAT 873
++ V+ ++DE H L + +RGP +E + R KR + ++GLS ++N K++A
Sbjct: 138 WLNEVSYFVLDEFHYLNDPERGPTVESVAIRAK------KRGI-VLGLSATISNGKEIAN 190
Query: 874 WLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMN--KPIY--TAIKQH----- 924
WLN + RPVPL+ I +P K+ + K N + +Y AI +
Sbjct: 191 WLNAELVAT-----NWRPVPLKEGII-YPEKKGFVVVYKDNTSRKVYGDDAIIAYTLDIV 244
Query: 925 SPEKPVMIFVSSRRQTRLTA---IDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLK 981
S V++F SSR+ TA + + + E + + E+++ N K+
Sbjct: 245 SKGGQVLVFRSSRKLAENTARKIVQYMNFVKLEDKKLLEIARKIKEVEDAGSNEKEDLYN 304
Query: 982 LTIAFGIGFHHAA 994
L + G+ +HHA
Sbjct: 305 LVLR-GVAYHHAG 316
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 147/331 (44%), Gaps = 33/331 (9%)
Query: 685 LQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPE 744
L++ ESLY P Q +++ PT SGKT+ A++ +
Sbjct: 17 LREEGIESLY------PPQAAAVDAGVADGESLVASVPTASGKTLVAQLAMLSAIDRGGT 70
Query: 745 AKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWD 804
A +YI PL+AL E+ ++ E L V TG + ++ +IV T EK D
Sbjct: 71 A--LYIVPLRALASEKREEFAAFEEYGLSVGVT--TGSYEDTGEWLADKDIIVATSEKVD 126
Query: 805 GVSRSWQNRNYVQSVALIIIDEIHLLGED-RGPVLEVIVSRVNFISSYTKRNVRLVGLST 863
+ R+ ++ + ++ DE+HL+ ++ RGP LEV ++++ ++ N+++V LS
Sbjct: 127 SLVRN--GAPWIDDLDCVVADEVHLVDDEHRGPTLEVTLAKLRRVNP----NLQVVALSA 180
Query: 864 ALANAKDLATWLNITKQGMYNFRPSVRPVPLE--VHIS-----GFPGKQYCPRMAKMNKP 916
+ NA ++A WL+ S RP+ L VH G +Q P + + KP
Sbjct: 181 TVGNAGEMAEWLDAEL-----VDSSWRPIELRKGVHYGQALHFGDGTQQELP-VQRTEKP 234
Query: 917 IYTAIKQHSPE-KPVMIFVSSRRQTRLTAIDL--ITILACETNPKMWVHTSDAEMDNIVD 973
+++ E ++FV+SRR A L T+ + + + + + E+ + D
Sbjct: 235 TEAVVRETLDEGGSTLVFVNSRRNAEGAAKRLAKTTVDGLDADERAALSSLAEEIRAVSD 294
Query: 974 NIKDSNLKLTIAFGIGFHHAAAEAAQSSALQ 1004
+L + G FHHA + S ++
Sbjct: 295 TETSDDLADCVEQGAAFHHAGCSSEHRSLVE 325
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 98/181 (54%), Gaps = 15/181 (8%)
Query: 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFR-VFKQ---CPEAKVVYIAPLKAL 756
P + I L N L+ PT SGKT+ E+ V + K ++I PLKAL
Sbjct: 19 PQKKVIEEGLLDKSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVPLKAL 78
Query: 757 VKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYV 816
E+ +++ K+E KV GD + +S ++I+TT EK D + R N ++
Sbjct: 79 ASEKFDEFQKKYET-YGIKVGMSIGDYDTK-EDLSKYNIIITTSEKLDSLMR--HNIEWI 134
Query: 817 QSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWL 875
+ ++L +IDEIHL+G+ +RG LEVI++++ I N ++VGLS + N +++A WL
Sbjct: 135 KDLSLAVIDEIHLIGDNERGGTLEVILTKLKNI------NAQIVGLSATVGNPEEIANWL 188
Query: 876 N 876
N
Sbjct: 189 N 189
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 133/310 (42%), Gaps = 29/310 (9%)
Query: 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-------CPEAKVVYIAPL 753
P Q + N++ PT SGKT+ A++ + + +YI PL
Sbjct: 27 PPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPL 86
Query: 754 KALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNR 813
+AL E+ +++ FE R V TG+ D ++ ++V T EK D + R+
Sbjct: 87 RALAGEKAQEFEA-FE-RFGLSVGVSTGNYERDGARLADNDIVVATSEKVDSLVRN--GA 142
Query: 814 NYVQSVALIIIDEIHLLGED-RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLA 872
++ ++ ++ DE+HL+ +D RGP LEV ++++ + ++++V LS + NA +LA
Sbjct: 143 GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVA----DLQVVALSATVGNAGELA 198
Query: 873 TWLNITKQGMYNFRPSVRPVPLE--VHISGF----PGKQYCPRMAKMNKPIYTAIKQHSP 926
WL+ RP+ L VH G Q + ++ +
Sbjct: 199 AWLDAEL-----VDSDWRPIELRTGVHYGQSLHYDDGTQAELSVGSGSQTAAVVADTLAD 253
Query: 927 EKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSD--AEMDNIVDNIKDSNLKLTI 984
+ ++FV+SRR +A L + + +D AE+ + D L +
Sbjct: 254 DGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEIRGVSDTETSDELADAV 313
Query: 985 AFGIGFHHAA 994
A G FHHA
Sbjct: 314 ASGAAFHHAG 323
Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 158 EMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIIT-PHEKLNHYLS--LLTNQIP 214
+ Y+ G + +L+V Q+FGRAGRP + G A ++ H++L + + P
Sbjct: 367 QRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYVYADPEP 426
Query: 215 IESNFVANLA 224
+ S A A
Sbjct: 427 VRSKLAAEPA 436
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 133/310 (42%), Gaps = 29/310 (9%)
Query: 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-------CPEAKVVYIAPL 753
P Q + N++ PT SGKT+ A++ + + +YI PL
Sbjct: 27 PPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPL 86
Query: 754 KALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNR 813
+AL E+ +++ FE R V TG+ D ++ ++V T EK D + R+
Sbjct: 87 RALAGEKAQEFEA-FE-RFGLSVGVSTGNYERDGARLADNDIVVATSEKVDSLVRN--GA 142
Query: 814 NYVQSVALIIIDEIHLLGED-RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLA 872
++ ++ ++ DE+HL+ +D RGP LEV ++++ + ++++V LS + NA +LA
Sbjct: 143 GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVA----DLQVVALSATVGNAGELA 198
Query: 873 TWLNITKQGMYNFRPSVRPVPLE--VHISGF----PGKQYCPRMAKMNKPIYTAIKQHSP 926
WL+ RP+ L VH G Q + ++ +
Sbjct: 199 AWLDAEL-----VDSDWRPIELRTGVHYGQSLHYDDGTQAELSVGSGSQTAAVVADTLAD 253
Query: 927 EKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSD--AEMDNIVDNIKDSNLKLTI 984
+ ++FV+SRR +A L + + +D AE+ + D L +
Sbjct: 254 DGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEIRGVSDTETSDELADAV 313
Query: 985 AFGIGFHHAA 994
A G FHHA
Sbjct: 314 ASGAAFHHAG 323
Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 158 EMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIIT-PHEKLNHYLS--LLTNQIP 214
+ Y+ G + +L+V Q+FGRAGRP + G A ++ H++L + + P
Sbjct: 367 QRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYVYADPEP 426
Query: 215 IESNFVANLA 224
+ S A A
Sbjct: 427 VRSKLAAEPA 436
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 59/348 (16%)
Query: 691 ESLYKFSH----FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAK 746
E LY++ H N +Q + N++ PT GKT+ AEI + C
Sbjct: 334 EKLYEWQHTCLTLNSVQER---------KNLIYSLPTSGGKTLVAEILMLQEL-LCCRKD 383
Query: 747 VVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVT--PDIQAISSASVIVTTPEKWD 804
V+ I P A+V+E+++ F L V E G P + S+ + T EK
Sbjct: 384 VLMILPYVAIVQEKISGLS-SFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGH 442
Query: 805 GVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLST 863
+ S + S+ L+++DE+H++GE RG LE+ ++++ YT + +++G+S
Sbjct: 443 SLVNSLIETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKI----LYTSKTTQIIGMSA 498
Query: 864 ALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHI-------------------SGFPGK 904
L N +DL +L Q Y + RPV L+ ++ S
Sbjct: 499 TLNNVEDLQKFL----QAEY-YTSQFRPVELKEYLKINDTIYEVDSKAENGMTFSRLLNY 553
Query: 905 QYCPRMAKMNKPIYTA-IKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHT 963
+Y + KM+ A + + P ++F S++ + + + C+ K ++
Sbjct: 554 KYSDTLKKMDPDHLVALVTEVIPNYSCLVFCPSKKN-----CENVAEMICKFLSKEYLKH 608
Query: 964 SDAEMDNIVDNIKDSN-------LKLTIAFGIGFHHAAAEAAQSSALQ 1004
+ E ++ N+K+ LK TI FG+ +HH+ + + L+
Sbjct: 609 KEKEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLE 656
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 133/295 (45%), Gaps = 39/295 (13%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
N+L PT SGKT+ AE+ + K +YI PL+AL E+ ++ +F + L +
Sbjct: 41 NLLAAIPTASGKTLLAELAMLKSI--LAGGKALYIVPLRALASEKFRRFR-EF-SELGIR 96
Query: 776 VVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DR 834
V TGD + + +IV T EK D + R+ ++Q +++++ DE+HL+ DR
Sbjct: 97 VGISTGDYDLRDEGLGVNDIIVATSEKTDSLLRN--ETVWMQEISVVVADEVHLIDSPDR 154
Query: 835 GPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPL 894
GP LEV ++++ ++ + +++ LS + NA +LA WL + + +RP+
Sbjct: 155 GPTLEVTLAKLRKMNP----SCQILALSATVGNADELAVWLE-AELVVSEWRPT------ 203
Query: 895 EVHISG--FPGKQYCPRMAKM------NKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAID 946
+ G F G YC K ++ + A+ + ++F SSR+ A
Sbjct: 204 -ELLEGVFFNGTFYCKDREKTVEQSTKDEAVNLALDTLKKDGQCLVFESSRKNCMAFAKK 262
Query: 947 LITILACETNPKMWVHTSDAEMDNIVDNI-------KDSNLKLTIAFGIGFHHAA 994
A T K + I D I +NL + I G FHHA
Sbjct: 263 -----AASTVKKTLSAEDRNALAGIADEILENSETDTSTNLAVCIRSGTAFHHAG 312
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 135/305 (44%), Gaps = 28/305 (9%)
Query: 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758
F P Q N+++ APTGSGKT A + + + Y+ PLK++
Sbjct: 29 FEP-QYMALQAGVEKGENLVVAAPTGSGKTFIALVAIVNSLARA-GGRAFYLVPLKSVAY 86
Query: 759 ERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQS 818
E+ + + LK K+ GD + A V++ T EK+D + R + + ++
Sbjct: 87 EKYTSFSILSRMGLKLKIS--VGDFR---EGPPEAPVVIATYEKFDSLLRV--SPSLARN 139
Query: 819 VALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNI 877
V+++I+DEIH + + RGP+LE IVSR+ + +LVGLS + NA ++A W+
Sbjct: 140 VSVLIVDEIHSVSDPKRGPILESIVSRMLASAG----EAQLVGLSATVPNAGEIAEWI-- 193
Query: 878 TKQGMYNFRPSVRPVPLEVHI-------SGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPV 930
G S RPVPL ++ S G + PR+ + + A +
Sbjct: 194 ---GGKIVESSWRPVPLREYVFKEYKLYSPTGGLREVPRVYGLYD-LDLAAEAIEDGGQA 249
Query: 931 MIFVSSRRQTRLTAIDLITILACETNPK-MWVHTSDAEMDNIVDNIKDSNLKLTIAFGIG 989
++F SRR+ A L + + V++++A L IA GI
Sbjct: 250 LVFTYSRRRAVTLAKRAAKRLGRRLSSREARVYSAEASRAEGAPRSVAEELASLIAAGIA 309
Query: 990 FHHAA 994
+HHA
Sbjct: 310 YHHAG 314
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 43 FKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNA 102
GV+ L Q + ENL++ APTG+GKT +A++ I + + + + +
Sbjct: 22 LAGVERLFEPQYMALQAGVEKGENLVVAAPTGSGKTFIALVAIVNSLARAGGRAFYLVPL 81
Query: 103 KHGCYVHIGILDVLQIFG 120
K Y +L G
Sbjct: 82 KSVAYEKYTSFSILSRMG 99
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 135/303 (44%), Gaps = 23/303 (7%)
Query: 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKER 760
P Q + +VLL T SGK++ AE+ + + A +Y PLKAL E+
Sbjct: 26 PPQVEAVRAGIFDGRSVLLCTATASGKSLLAEVAAVKAGLEGRMA--LYAVPLKALAYEK 83
Query: 761 VADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVA 820
+ + R KV TGD D + + V+V T EK D + R N++ V
Sbjct: 84 LVHFSYY---RGLVKVGVSTGDFDSDDRRLHEFDVVVVTYEKLDSLLR--HRPNWLGLVG 138
Query: 821 LIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK 879
++++DEIH LG+ RGPVLE IV+++ + T+ +GLS + NA ++A WL
Sbjct: 139 VVVVDEIHYLGDPRRGPVLESIVAKLRHLGLKTQ----FIGLSATVGNAGEVAAWL---- 190
Query: 880 QGMYNFRPSVRPVPLEVHI-SGFPGKQYCPRMAKMNKP----IYTAIKQHSPEKPVMIFV 934
G S RPVPL + G + M ++N P + A+ + ++F
Sbjct: 191 -GARLVESSWRPVPLREGVYHGGVIRFSDGSMQRVNAPGDAEVALAVDAVAGGGQALVFT 249
Query: 935 SSRRQT-RLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHA 993
+SR T RL + A P+ ++ + I L +A G+ FH+A
Sbjct: 250 NSRSSTVRLAKAVAKAMEAAGLVPRGAKALAEEVLKASSSKIIGRELADLVARGVAFHNA 309
Query: 994 AAE 996
E
Sbjct: 310 GLE 312
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 140/311 (45%), Gaps = 36/311 (11%)
Query: 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKER 760
P Q + N+L PT SGKT+ AE+ + + K +YI PLKAL E+
Sbjct: 26 PPQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKSIAEG--GKAIYIVPLKALASEK 83
Query: 761 VADWKVKFEARLKK----KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYV 816
D ++F K KV TGD + + +IV T EK D + R+ +++
Sbjct: 84 Y-DRFLEFSKLPIKPDGVKVGIATGDFDSRDEYLGEKDIIVATSEKTDSLLRN--GASWL 140
Query: 817 QSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWL 875
+++++ DE+HL+ +RGP LEV ++++ I+ N++++ LS + NAK LA W+
Sbjct: 141 SGLSVVVADEVHLIDSPNRGPTLEVTLAKLRKINV----NLQILALSATIGNAKALAKWM 196
Query: 876 NITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAK----------MNKPIYTAIKQHS 925
+ + RP L+ + F G+ + K +N + +++
Sbjct: 197 DAAL-----VQSEWRPTTLKEGV--FYGRAITFKKEKRTVNNAGPDEVNSLVADTLEEGG 249
Query: 926 PEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLT-- 983
++F ++R+ + A + L+ + P + + D + D+ KL
Sbjct: 250 ---QCLVFANTRKSSESIAQKVARSLSKKLQPAEKEQLAKLKQDVLRHAETDTCEKLAEC 306
Query: 984 IAFGIGFHHAA 994
+ G+ FHHA
Sbjct: 307 VGNGVAFHHAG 317
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 29/291 (9%)
Query: 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
N+L PT SGKT+ AE+ + K +YI PL+AL E+ ++ E ++
Sbjct: 40 KNLLAAIPTASGKTLLAELAMLKSV--LAGGKALYIVPLRALASEKFRRFQDFSELGIRV 97
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL-GED 833
+ TGD + + +IV T EK D + R+ ++Q ++++++DE+HL+ D
Sbjct: 98 GIS--TGDYDRRDEGLGINDIIVATSEKTDSLLRN--ETAWMQEISVVVVDEVHLIDSAD 153
Query: 834 RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVP 893
RGP LEV ++++ ++ + + ++ LS + NA +LA WL+ RP
Sbjct: 154 RGPTLEVTLAKLRKMNPFCQ----ILALSATVGNADELAAWLDAEL-----VLSEWRPTD 204
Query: 894 LEVHISGFPGKQYCPRMAKM------NKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDL 947
L + F G +C K+ ++ I + ++F SSR+ A
Sbjct: 205 LMEGVF-FDGTFFCKDKEKLIEQPTKDEAINLVLDTLREGGQCLVFESSRKNCMGFAKKA 263
Query: 948 IT----ILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAA 994
+ L+ E K+ +D ++N + S L + G FHHA
Sbjct: 264 TSAVKKTLSAEDKEKL-AGIADEILENSETDTA-SVLASCVRAGTAFHHAG 312
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 140/316 (44%), Gaps = 38/316 (12%)
Query: 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
N++ PT GKT+ AEI + C + V+ I P A+V+E+++ F L
Sbjct: 312 KNLIYSLPTSGGKTLVAEILMLQEL-LCRQKDVLMILPYVAIVQEKISSLS-SFGIELGF 369
Query: 775 KVVELTGDVT--PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832
V E G P I+ S+ + T EK + + + + ++ L+++DE+H++GE
Sbjct: 370 FVEEYAGSKGRFPPIKRREKKSLYIATIEKAHSLVNALIETSRLSTLGLVVVDELHMIGE 429
Query: 833 -DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRP---- 887
RG +LE+ +++V YT + +++G+S L N +DL +L + FRP
Sbjct: 430 GSRGAILEMTLAKV----LYTSKTTQIIGMSATLNNVEDLQAFLK-AEYYTSQFRPVELK 484
Query: 888 ---SVRPVPLEVHISGFPGK--------QYCPRMAKMNKPIYTA-IKQHSPEKPVMIFVS 935
V EV G +Y + KM+ A + + P ++F
Sbjct: 485 EFLKVNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALVTEVIPNYSCLVFCP 544
Query: 936 SRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSN-------LKLTIAFGI 988
S++ A L L+ K +++ + E ++ ++++ LK T+ FGI
Sbjct: 545 SKKNCENVAEMLCKFLS-----KDYLNHREKEKCEVIKSLRNIGNGKVCPVLKRTVPFGI 599
Query: 989 GFHHAAAEAAQSSALQ 1004
+HH+ + + L+
Sbjct: 600 AYHHSGLTSEERKLLE 615
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 145/310 (46%), Gaps = 44/310 (14%)
Query: 698 HFNPIQTQIFHCLY-HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756
NP Q Y +++N ++ PT SGKT+ I + + +V+Y PL ++
Sbjct: 21 ELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTVMEG--GRVIYTVPLLSI 78
Query: 757 VKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR-SWQNRNY 815
E++ +++ +L++ + + D ++ + V E +D ++R SW N
Sbjct: 79 QNEKIKEFR-----KLEEHGIRVGKDP-------RTSDIAVMVFESFDSLTRFSW---NI 123
Query: 816 VQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATW 874
++ V L+I+DE H++GE RGPV+E ++R ++ +VR+V LS L+N ++A W
Sbjct: 124 LREVDLLIVDEFHMIGEYTRGPVIESAITRARTLNP----SVRIVALSATLSNMDEIAGW 179
Query: 875 LNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPE-KPVMIF 933
L+ + +++ RPVPL H + + R + N + +++ + + F
Sbjct: 180 LD-ARVVEHDY----RPVPL--HREVLDTEMFGVR--EKNDVVLKVLERSLEDGSQTLAF 230
Query: 934 VSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSN-------LKLT--I 984
VS+RR T A L ++ + P V + +++ K LKL +
Sbjct: 231 VSTRRFTESLASHLADKISGKI-PDDMVESFREVAGKVLEVPKSRGSPPTSTCLKLAECL 289
Query: 985 AFGIGFHHAA 994
GI FHHA
Sbjct: 290 EAGIAFHHAG 299
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 120/258 (46%), Gaps = 44/258 (17%)
Query: 660 KHLIVPELHPPHTNLLELQPLPVSALQQPQY----ESLYKFSHFN----------PIQTQ 705
KH + +L P +++ L P ++ +QP Y +S +F P +
Sbjct: 223 KHSEIDDLLPDKRSIVSLPPSTLNLHKQPDYAHVVDSSAPIENFQQLVPEMALDFPFELD 282
Query: 706 IFH--CLYHTD--NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERV 761
F +YH + ++V + A T +GKT+ AE Q K +Y +P+KAL ++
Sbjct: 283 NFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAI--ALAQKHMTKAIYTSPIKALSNQKF 340
Query: 762 ADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQNRNYVQSV 819
D+K KFE G +T D+Q S ++ T E + RS ++ + ++ V
Sbjct: 341 RDFKHKFED---------VGILTGDVQVNPEGSCLLMTTE----ILRSMLYRGADLIRDV 387
Query: 820 ALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNIT 878
+I DE+H + + +RG V E ++ + +V L+ LS + N K+ A+W+ T
Sbjct: 388 EFVIFDEVHYVNDLERGVVWEEVIIML-------PPHVTLILLSATVPNTKEFASWVGRT 440
Query: 879 -KQGMYNFRPSVRPVPLE 895
K+ +Y RPVPLE
Sbjct: 441 KKKNIYVISTLKRPVPLE 458
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 141/314 (44%), Gaps = 47/314 (14%)
Query: 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKER 760
P Q + N+L PT SGKT+ AE+ + K +YI PL+AL E+
Sbjct: 26 PPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVLNG--GKALYIVPLRALASEK 83
Query: 761 VADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVA 820
++ +F L +V TGD + + +IV T EK D + R+ ++Q ++
Sbjct: 84 FRRFQ-EFSV-LGMRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLRN--ETAWMQEIS 139
Query: 821 LIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK 879
+++ DE+HL+ DRGP LE+ +S++ ++ + +++ LS + NA +LA WL+ +
Sbjct: 140 VVVADEVHLIDSPDRGPTLEITLSKLRRMNP----SCQVLALSATVGNADELAAWLD-AE 194
Query: 880 QGMYNFRPSVRPVPLEVHISG--FPGKQYCPRMAK-MNKP--------IYTAIKQHSPEK 928
+ +RP+ + G + G YC K + +P + IK+
Sbjct: 195 LVLSEWRPT-------DLMEGVFYNGIFYCKDKEKPVGQPTKDEAVNLVLDTIKEGG--- 244
Query: 929 PVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAE-----MDNIVDNIK---DSNL 980
++F SSR+ A ++ + K + D E D I++N + S L
Sbjct: 245 QCLVFESSRKNCMGFAKKAVSAV------KKTLSNEDRETLAGIADEIIENSETDVSSVL 298
Query: 981 KLTIAFGIGFHHAA 994
+ G FHHA
Sbjct: 299 ATCVRSGTAFHHAG 312
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
Length = 808
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 49/264 (18%)
Query: 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKER 760
P+QT +++L+ + T SGKT+ E+ + + + K +++ PL AL ++
Sbjct: 214 PVQTLSVKAGLLNGDDLLIISATSSGKTLIGELAGIKNLIKTGK-KFLFLVPLVALANQK 272
Query: 761 VADWKVKFE------------ARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR 808
++K ++E R+ KKV D++ A +IV T E D + R
Sbjct: 273 YLEFKERYEKLGFKVSLRVGLGRIGKKV---------DVETSLDADIIVGTYEGIDYLIR 323
Query: 809 SWQNRNYVQSVALIIIDEIHLLG-EDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867
+ + ++ + ++IDEIH L E+RG L+ ++ R+ F+ ++ + LS + N
Sbjct: 324 TKR----LKDIGTVVIDEIHSLNLEERGARLDGLIGRLRFLFKEAQK----IYLSATIGN 375
Query: 868 AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPR-MAKMN------KPIYTA 920
K+LA LN K +YN RPVPLE HI +C AK+N K +
Sbjct: 376 PKELAKQLN-AKLVLYNG----RPVPLERHII------FCKNDFAKLNIIKEIVKREWQN 424
Query: 921 IKQHSPEKPVMIFVSSRRQTRLTA 944
I + +IF SR++ A
Sbjct: 425 ISKFGYRGQCLIFTYSRKRAEYLA 448
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 28/206 (13%)
Query: 701 PIQTQIFH--CLYHTD--NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756
P + F +YH + ++V + A T +GKT+ AE + K +Y +P+KAL
Sbjct: 327 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM--TKTIYTSPIKAL 384
Query: 757 VKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQNRN 814
++ D+K F+ V + G +T D+Q A+ ++ T E + RS ++ +
Sbjct: 385 SNQKFRDFKETFDD------VNI-GLITGDVQINPDANCLIMTTE----ILRSMLYRGAD 433
Query: 815 YVQSVALIIIDEIHLLG-EDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLAT 873
++ V +I DE+H + +DRG V E ++ + ++V+ + LS + N + A
Sbjct: 434 LIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML-------PQHVKFILLSATVPNTYEFAN 486
Query: 874 WLNITKQ-GMYNFRPSVRPVPLEVHI 898
W+ TKQ +Y RPVPLE++I
Sbjct: 487 WIGRTKQKNIYVISTPKRPVPLEINI 512
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 22/192 (11%)
Query: 716 NVLLGAPTGSGKTIAAEITCF-RVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
N++ APT +GKT+ AE+ RV + K ++I P ++ KE+ + F+ +
Sbjct: 110 NLVYSAPTSAGKTLVAELLILKRVLEM--RKKALFILPFVSVAKEKKYYLQSLFQ-EVGI 166
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED- 833
KV G +P + SS + V T E+ +G+ N + + ++++DE+H+LG+
Sbjct: 167 KVDGYMGSTSPS-RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSH 225
Query: 834 RGPVLEVIVSRVNFIS-----------SYTKRNVRLVGLSTALANAKDLATWLNITKQGM 882
RG +LE++++++ +I+ S V++VG+S L N + +A+WLN
Sbjct: 226 RGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAEL--- 282
Query: 883 YNFRPSVRPVPL 894
+ RPVPL
Sbjct: 283 --YHTDFRPVPL 292
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 23/187 (12%)
Query: 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
+ VL+ APTG+GKT+ E +K Y PLKAL ++ D ++ +
Sbjct: 33 HGVLVCAPTGAGKTVVGEFAVH--LALAAGSKCFYTTPLKALSNQKHTDLTARYG---RD 87
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQNRNYVQSVALIIIDEIHLLGE 832
++ LTGD++ + +A V+V T E V R+ + + +Q ++ +++DE+H L +
Sbjct: 88 QIGLLTGDLSVN----GNAPVVVMTTE----VLRNMLYADSPALQGLSYVVMDEVHFLAD 139
Query: 833 D-RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRP 891
RGPV E ++ ++ +VR+V LS ++NA++ W+ + RP
Sbjct: 140 RMRGPVWEEVILQL-------PDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVVVDEHRP 192
Query: 892 VPLEVHI 898
VPL H+
Sbjct: 193 VPLWQHV 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 372,885,149
Number of Sequences: 539616
Number of extensions: 15768130
Number of successful extensions: 45994
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 45211
Number of HSP's gapped (non-prelim): 610
length of query: 1034
length of database: 191,569,459
effective HSP length: 128
effective length of query: 906
effective length of database: 122,498,611
effective search space: 110983741566
effective search space used: 110983741566
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)