Query psy13788
Match_columns 1034
No_of_seqs 615 out of 3759
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 20:31:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0952|consensus 100.0 2E-144 4E-149 1239.5 38.5 928 1-1003 232-1229(1230)
2 KOG0951|consensus 100.0 1E-141 3E-146 1225.6 52.3 930 3-1029 433-1444(1674)
3 PRK02362 ski2-like helicase; P 100.0 5.2E-59 1.1E-63 574.1 35.4 477 3-550 133-705 (737)
4 PRK00254 ski2-like helicase; P 100.0 4.9E-55 1.1E-59 537.5 33.3 475 3-549 134-699 (720)
5 PRK01172 ski2-like helicase; P 100.0 3.5E-54 7.6E-59 528.2 37.1 465 3-551 131-668 (674)
6 COG1204 Superfamily II helicas 100.0 1.1E-51 2.4E-56 495.0 19.4 515 2-612 141-762 (766)
7 smart00611 SEC63 Domain of unk 100.0 4.1E-47 8.9E-52 424.0 32.9 307 338-659 2-311 (312)
8 KOG0952|consensus 100.0 1.8E-47 3.9E-52 440.5 26.0 353 661-1032 75-438 (1230)
9 PF02889 Sec63: Sec63 Brl doma 100.0 2.1E-45 4.6E-50 411.2 25.6 306 340-659 1-314 (314)
10 KOG0951|consensus 100.0 5.5E-43 1.2E-47 407.2 23.6 333 692-1029 303-647 (1674)
11 PRK02362 ski2-like helicase; P 100.0 3E-41 6.6E-46 416.4 30.7 327 676-1033 7-346 (737)
12 COG1202 Superfamily II helicas 100.0 1.5E-42 3.2E-47 376.3 13.5 414 4-481 335-829 (830)
13 COG1204 Superfamily II helicas 100.0 1.4E-40 3.1E-45 399.4 25.9 318 698-1029 31-354 (766)
14 KOG0950|consensus 100.0 6.5E-41 1.4E-45 386.0 19.2 472 3-536 337-934 (1008)
15 PRK00254 ski2-like helicase; P 100.0 4.9E-39 1.1E-43 395.8 30.4 321 676-1033 7-338 (720)
16 PRK01172 ski2-like helicase; P 100.0 6.8E-38 1.5E-42 384.4 28.0 307 695-1033 20-328 (674)
17 TIGR03817 DECH_helic helicase/ 100.0 9.5E-37 2.1E-41 371.6 28.5 326 663-1033 6-346 (742)
18 KOG0330|consensus 100.0 4.1E-37 8.9E-42 320.9 16.3 296 675-1034 66-368 (476)
19 KOG0331|consensus 100.0 1.4E-36 3.1E-41 339.8 20.6 296 676-1033 97-408 (519)
20 COG1201 Lhr Lhr-like helicases 100.0 2.7E-35 5.9E-40 347.9 26.5 290 696-1032 20-320 (814)
21 PLN00206 DEAD-box ATP-dependen 100.0 9.3E-36 2E-40 352.7 22.6 294 676-1033 127-435 (518)
22 COG0513 SrmB Superfamily II DN 100.0 3.8E-35 8.2E-40 344.7 25.9 295 676-1034 35-341 (513)
23 PRK10590 ATP-dependent RNA hel 100.0 3E-35 6.5E-40 344.4 24.9 294 676-1033 7-312 (456)
24 PRK11776 ATP-dependent RNA hel 100.0 4.2E-35 9.1E-40 344.9 25.6 294 676-1033 10-309 (460)
25 PRK13767 ATP-dependent helicas 100.0 1.3E-34 2.8E-39 360.2 30.3 300 695-1033 29-357 (876)
26 PTZ00110 helicase; Provisional 100.0 5.1E-35 1.1E-39 347.1 24.3 295 676-1033 136-444 (545)
27 PRK04537 ATP-dependent RNA hel 100.0 1.5E-34 3.2E-39 344.2 25.9 296 676-1033 15-324 (572)
28 PRK04837 ATP-dependent RNA hel 100.0 2.8E-34 6.2E-39 334.1 26.4 294 676-1033 14-322 (423)
29 KOG0338|consensus 100.0 2.7E-35 5.8E-40 316.0 15.2 298 676-1033 187-493 (691)
30 PRK11192 ATP-dependent RNA hel 100.0 3.8E-34 8.2E-39 334.8 26.2 294 676-1033 7-312 (434)
31 COG1202 Superfamily II helicas 100.0 2E-34 4.4E-39 313.2 19.7 285 695-1032 213-506 (830)
32 PRK11634 ATP-dependent RNA hel 100.0 1E-33 2.2E-38 338.5 26.3 294 676-1033 12-312 (629)
33 PRK01297 ATP-dependent RNA hel 100.0 2E-33 4.3E-38 331.5 25.8 295 676-1033 93-402 (475)
34 TIGR00614 recQ_fam ATP-depende 100.0 3.7E-33 8.1E-38 327.7 26.1 282 690-1033 3-293 (470)
35 PRK09751 putative ATP-dependen 100.0 1.2E-32 2.5E-37 345.7 26.8 302 719-1033 1-344 (1490)
36 PTZ00424 helicase 45; Provisio 100.0 1.2E-32 2.6E-37 319.9 25.1 295 676-1033 34-334 (401)
37 KOG0340|consensus 100.0 1.6E-33 3.4E-38 290.8 15.4 297 673-1032 10-320 (442)
38 PLN03137 ATP-dependent DNA hel 100.0 1.6E-32 3.5E-37 329.9 24.5 279 690-1033 452-747 (1195)
39 KOG0333|consensus 100.0 8.3E-33 1.8E-37 298.3 19.8 321 653-1033 229-584 (673)
40 KOG0345|consensus 100.0 1.2E-32 2.6E-37 294.0 20.4 298 677-1034 13-325 (567)
41 KOG0328|consensus 100.0 4E-33 8.7E-38 278.6 15.1 282 694-1032 45-332 (400)
42 KOG0342|consensus 100.0 8.6E-33 1.9E-37 297.6 18.5 300 676-1033 88-397 (543)
43 KOG0348|consensus 100.0 4.1E-32 8.9E-37 293.3 19.1 328 675-1033 141-514 (708)
44 KOG0343|consensus 100.0 3.6E-32 7.7E-37 294.5 16.5 296 676-1033 75-382 (758)
45 KOG0335|consensus 100.0 7.4E-32 1.6E-36 296.5 18.9 322 653-1034 58-405 (482)
46 TIGR01389 recQ ATP-dependent D 100.0 4.6E-31 9.9E-36 319.2 25.8 278 690-1033 5-291 (591)
47 KOG0326|consensus 100.0 7.7E-32 1.7E-36 273.8 12.7 278 695-1032 104-388 (459)
48 PRK11057 ATP-dependent DNA hel 100.0 1.2E-30 2.6E-35 314.1 25.0 275 688-1033 15-303 (607)
49 KOG0339|consensus 100.0 1.8E-30 4E-35 278.4 17.0 282 696-1033 243-535 (731)
50 KOG0947|consensus 100.0 7.7E-30 1.7E-34 291.6 22.7 304 694-1030 294-671 (1248)
51 COG4581 Superfamily II RNA hel 100.0 2.4E-29 5.2E-34 301.0 27.8 309 692-1030 114-485 (1041)
52 KOG0336|consensus 100.0 1.2E-30 2.5E-35 272.9 13.1 303 665-1033 215-532 (629)
53 KOG0341|consensus 100.0 2.1E-31 4.6E-36 276.6 6.0 341 625-1033 125-488 (610)
54 COG1205 Distinct helicase fami 100.0 4.6E-29 1E-33 304.6 26.5 303 697-1032 69-380 (851)
55 KOG0350|consensus 100.0 2.6E-29 5.7E-34 270.1 19.2 297 695-1034 156-501 (620)
56 KOG0948|consensus 100.0 1.3E-29 2.9E-34 282.9 17.0 309 693-1030 125-487 (1041)
57 TIGR00580 mfd transcription-re 100.0 3.3E-28 7.1E-33 299.0 26.8 274 689-1034 443-730 (926)
58 KOG0334|consensus 100.0 3.3E-29 7.2E-34 293.8 16.2 296 676-1033 371-680 (997)
59 COG0514 RecQ Superfamily II DN 100.0 1.7E-28 3.6E-33 280.5 20.1 273 690-1033 9-297 (590)
60 KOG0346|consensus 100.0 1.6E-28 3.4E-33 260.1 16.4 288 675-1024 24-327 (569)
61 KOG0332|consensus 100.0 9.6E-29 2.1E-33 256.9 14.4 300 673-1034 93-398 (477)
62 KOG0347|consensus 100.0 3.4E-29 7.4E-34 271.6 9.3 306 677-1033 188-530 (731)
63 PRK10689 transcription-repair 100.0 2.9E-27 6.2E-32 296.9 26.7 274 689-1033 592-878 (1147)
64 KOG0947|consensus 100.0 8.8E-29 1.9E-33 283.1 11.6 118 104-231 631-757 (1248)
65 PRK10917 ATP-dependent DNA hel 100.0 3.6E-27 7.8E-32 287.0 26.1 274 690-1034 254-549 (681)
66 TIGR00643 recG ATP-dependent D 100.0 4.8E-27 1E-31 284.2 25.4 274 692-1033 230-525 (630)
67 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.5E-27 1.2E-31 279.3 25.3 290 690-1033 8-353 (844)
68 KOG0344|consensus 99.9 3.3E-28 7.1E-33 268.8 11.7 287 695-1034 155-456 (593)
69 TIGR03158 cas3_cyano CRISPR-as 99.9 2.2E-26 4.9E-31 259.7 25.9 281 702-1033 1-335 (357)
70 KOG4284|consensus 99.9 2.7E-27 5.8E-32 260.5 13.1 286 695-1032 44-338 (980)
71 KOG0950|consensus 99.9 1.1E-26 2.4E-31 268.9 17.4 319 695-1029 220-562 (1008)
72 KOG0327|consensus 99.9 3.9E-27 8.5E-32 248.0 12.3 292 676-1033 32-330 (397)
73 TIGR01587 cas3_core CRISPR-ass 99.9 3.5E-26 7.6E-31 261.2 21.0 269 716-1033 1-295 (358)
74 KOG0337|consensus 99.9 7.1E-27 1.5E-31 246.6 12.1 293 676-1032 27-327 (529)
75 KOG0948|consensus 99.9 5.2E-28 1.1E-32 270.3 2.6 119 103-231 446-572 (1041)
76 PRK09401 reverse gyrase; Revie 99.9 9.2E-25 2E-29 275.0 25.4 273 692-1033 75-397 (1176)
77 KOG0351|consensus 99.9 2.6E-25 5.6E-30 269.1 17.3 279 690-1032 256-551 (941)
78 KOG0352|consensus 99.9 2.5E-25 5.4E-30 234.5 14.4 279 689-1032 10-321 (641)
79 PRK14701 reverse gyrase; Provi 99.9 1.4E-24 3.1E-29 278.4 23.2 280 690-1033 72-399 (1638)
80 PHA02558 uvsW UvsW helicase; P 99.9 5.9E-24 1.3E-28 251.1 24.3 273 698-1034 114-413 (501)
81 KOG0353|consensus 99.9 1.2E-24 2.6E-29 225.6 15.5 278 692-1031 88-382 (695)
82 PRK11664 ATP-dependent RNA hel 99.9 1.7E-23 3.8E-28 255.7 25.6 269 705-1033 12-282 (812)
83 TIGR01970 DEAH_box_HrpB ATP-de 99.9 3.7E-23 8.1E-28 252.0 26.1 269 705-1033 9-279 (819)
84 TIGR01054 rgy reverse gyrase. 99.9 3.5E-23 7.5E-28 261.3 26.1 267 698-1033 78-396 (1171)
85 PHA02653 RNA helicase NPH-II; 99.9 6.7E-23 1.5E-27 243.9 25.6 275 701-1033 167-463 (675)
86 COG1111 MPH1 ERCC4-like helica 99.9 1E-22 2.2E-27 222.1 21.2 170 698-879 15-190 (542)
87 PRK09694 helicase Cas3; Provis 99.9 5.4E-22 1.2E-26 241.6 25.5 291 697-1033 285-638 (878)
88 KOG0354|consensus 99.9 2E-21 4.3E-26 224.8 22.9 159 698-867 62-223 (746)
89 COG4581 Superfamily II RNA hel 99.9 2.4E-22 5.1E-27 241.4 12.9 118 103-231 444-571 (1041)
90 TIGR00603 rad25 DNA repair hel 99.9 4E-21 8.7E-26 227.4 22.4 268 699-1032 256-558 (732)
91 COG1200 RecG RecG-like helicas 99.9 4.4E-21 9.4E-26 218.7 21.6 277 690-1034 255-551 (677)
92 PRK13766 Hef nuclease; Provisi 99.9 1.4E-20 3E-25 236.1 25.2 158 698-867 15-174 (773)
93 KOG0329|consensus 99.9 3.2E-22 6.9E-27 197.8 6.9 239 677-939 49-295 (387)
94 PF00270 DEAD: DEAD/DEAH box h 99.9 4.9E-21 1.1E-25 194.2 15.8 158 700-866 1-163 (169)
95 cd00268 DEADc DEAD-box helicas 99.9 1.2E-20 2.7E-25 197.4 18.8 163 694-867 17-186 (203)
96 PRK05580 primosome assembly pr 99.9 2.4E-20 5.2E-25 226.3 24.0 305 698-1034 144-498 (679)
97 TIGR03714 secA2 accessory Sec 99.8 2.9E-19 6.3E-24 211.6 23.7 128 699-830 69-207 (762)
98 COG1061 SSL2 DNA or RNA helica 99.8 1.8E-19 3.9E-24 208.6 21.4 269 698-1032 36-348 (442)
99 PRK12898 secA preprotein trans 99.8 2.8E-19 6E-24 209.5 22.8 130 694-830 100-254 (656)
100 PRK09200 preprotein translocas 99.8 3.5E-19 7.7E-24 213.1 21.0 130 694-830 75-211 (790)
101 KOG0949|consensus 99.8 4E-19 8.7E-24 204.8 20.4 168 699-876 512-682 (1330)
102 COG1197 Mfd Transcription-repa 99.8 7.1E-19 1.5E-23 211.5 22.8 275 689-1034 586-873 (1139)
103 TIGR00963 secA preprotein tran 99.8 7.7E-19 1.7E-23 206.6 21.5 131 694-831 53-189 (745)
104 KOG0349|consensus 99.8 4.8E-20 1E-24 194.8 8.5 246 745-1033 287-575 (725)
105 TIGR00595 priA primosomal prot 99.8 7.6E-19 1.7E-23 205.7 19.4 278 718-1034 1-330 (505)
106 PRK11131 ATP-dependent RNA hel 99.8 5.1E-18 1.1E-22 210.7 27.0 266 704-1033 80-354 (1294)
107 KOG4434|consensus 99.8 1.1E-17 2.4E-22 172.8 23.2 200 365-574 8-241 (520)
108 COG4098 comFA Superfamily II D 99.8 2.5E-17 5.3E-22 170.9 21.9 268 698-1033 97-372 (441)
109 PRK13104 secA preprotein trans 99.8 2E-17 4.4E-22 197.1 21.0 126 699-830 83-214 (896)
110 TIGR01967 DEAH_box_HrpA ATP-de 99.8 6.5E-17 1.4E-21 201.8 25.7 268 705-1033 74-347 (1283)
111 PRK12904 preprotein translocas 99.7 2E-16 4.4E-21 188.7 21.6 125 699-830 82-213 (830)
112 PRK11448 hsdR type I restricti 99.7 4.2E-16 9E-21 196.0 22.7 132 698-830 413-552 (1123)
113 COG1203 CRISPR-associated heli 99.7 5.4E-16 1.2E-20 190.4 19.3 285 699-1033 196-511 (733)
114 TIGR01407 dinG_rel DnaQ family 99.7 4.5E-15 9.8E-20 186.2 26.6 80 699-780 246-330 (850)
115 PRK04914 ATP-dependent helicas 99.7 1.7E-15 3.6E-20 186.3 20.8 157 698-867 152-317 (956)
116 smart00487 DEXDc DEAD-like hel 99.6 4.4E-15 9.5E-20 154.4 17.8 168 695-872 5-177 (201)
117 PRK13107 preprotein translocas 99.6 8.1E-15 1.8E-19 174.5 19.4 127 699-831 83-215 (908)
118 COG1643 HrpA HrpA-like helicas 99.6 8.8E-14 1.9E-18 167.5 24.2 267 706-1029 58-327 (845)
119 PRK13767 ATP-dependent helicas 99.6 3.2E-14 7E-19 178.1 17.9 223 4-286 169-458 (876)
120 COG1110 Reverse gyrase [DNA re 99.6 2.3E-13 5E-18 159.9 23.3 269 694-1032 79-403 (1187)
121 PRK12906 secA preprotein trans 99.6 1.1E-13 2.4E-18 164.9 21.0 130 694-830 77-212 (796)
122 COG1198 PriA Primosomal protei 99.6 9E-14 1.9E-18 165.0 19.2 298 699-1034 199-552 (730)
123 PRK12899 secA preprotein trans 99.6 2.1E-14 4.5E-19 171.2 13.3 131 695-831 86-228 (970)
124 TIGR00348 hsdR type I site-spe 99.5 1.7E-13 3.6E-18 166.8 20.6 154 699-867 239-404 (667)
125 PRK09751 putative ATP-dependen 99.5 2.7E-13 5.8E-18 172.3 19.4 167 107-343 306-489 (1490)
126 PF04851 ResIII: Type III rest 99.5 9.1E-14 2E-18 142.8 12.7 152 699-866 4-183 (184)
127 COG4096 HsdR Type I site-speci 99.5 4.1E-13 8.9E-18 155.8 19.0 153 697-868 164-323 (875)
128 KOG0922|consensus 99.5 2.1E-12 4.5E-17 146.7 23.7 270 705-1029 58-330 (674)
129 PRK07246 bifunctional ATP-depe 99.5 2E-12 4.4E-17 160.0 25.3 80 699-781 246-328 (820)
130 cd00046 DEXDc DEAD-like helica 99.5 5.1E-13 1.1E-17 130.4 15.3 141 715-865 1-144 (144)
131 COG1201 Lhr Lhr-like helicases 99.5 1.4E-13 3.1E-18 164.3 10.7 260 4-333 146-448 (814)
132 KOG4150|consensus 99.4 3.6E-12 7.7E-17 139.8 13.6 300 699-1033 287-600 (1034)
133 PRK08074 bifunctional ATP-depe 99.3 8.9E-11 1.9E-15 148.3 25.4 64 699-763 258-324 (928)
134 KOG1123|consensus 99.3 5E-12 1.1E-16 137.2 7.7 282 697-1032 301-605 (776)
135 KOG0920|consensus 99.3 9.3E-11 2E-15 140.9 19.0 282 700-1029 175-484 (924)
136 KOG0923|consensus 99.3 1.8E-10 3.9E-15 129.4 19.6 273 700-1029 267-546 (902)
137 PLN03142 Probable chromatin-re 99.3 1.6E-10 3.5E-15 143.2 19.9 151 699-866 170-330 (1033)
138 PRK12326 preprotein translocas 99.2 8.2E-10 1.8E-14 129.2 21.5 130 694-830 75-210 (764)
139 KOG0953|consensus 99.2 1.5E-10 3.3E-15 128.0 13.0 231 715-1033 192-426 (700)
140 KOG0924|consensus 99.2 7.2E-10 1.6E-14 124.8 18.0 273 701-1029 359-637 (1042)
141 TIGR03817 DECH_helic helicase/ 99.2 1.8E-10 4E-15 141.7 14.4 44 5-48 155-202 (742)
142 PRK13103 secA preprotein trans 99.1 2.4E-09 5.3E-14 128.5 20.7 126 699-830 83-214 (913)
143 COG5407 SEC63 Preprotein trans 99.1 8.1E-10 1.7E-14 118.6 12.5 218 350-605 225-494 (610)
144 KOG0949|consensus 99.1 7.8E-11 1.7E-15 137.4 4.9 91 104-210 963-1056(1330)
145 PRK11747 dinG ATP-dependent DN 99.1 2.4E-08 5.2E-13 122.5 26.0 64 699-763 26-97 (697)
146 TIGR00631 uvrb excinuclease AB 99.0 1.6E-08 3.6E-13 121.9 23.1 79 916-1033 430-509 (655)
147 TIGR02562 cas3_yersinia CRISPR 99.0 5.8E-09 1.3E-13 126.2 18.0 161 700-867 410-636 (1110)
148 TIGR03117 cas_csf4 CRISPR-asso 99.0 3.9E-09 8.4E-14 125.1 14.6 64 703-766 2-68 (636)
149 TIGR01967 DEAH_box_HrpA ATP-de 99.0 6.8E-09 1.5E-13 130.9 17.4 161 144-379 342-511 (1283)
150 COG0556 UvrB Helicase subunit 99.0 1.2E-08 2.7E-13 113.0 16.7 66 699-769 13-82 (663)
151 TIGR00604 rad3 DNA repair heli 99.0 9.4E-08 2E-12 118.3 25.6 75 692-766 4-82 (705)
152 PF07652 Flavi_DEAD: Flaviviru 98.9 2.1E-08 4.6E-13 94.3 14.0 135 713-867 3-138 (148)
153 CHL00122 secA preprotein trans 98.9 3.9E-08 8.5E-13 117.8 18.5 130 694-830 73-208 (870)
154 PRK12900 secA preprotein trans 98.9 4.5E-08 9.8E-13 118.2 18.8 126 699-830 139-270 (1025)
155 PRK11131 ATP-dependent RNA hel 98.9 2.3E-08 5.1E-13 125.7 17.2 186 134-394 340-534 (1294)
156 COG1199 DinG Rad3-related DNA 98.9 3.3E-08 7.1E-13 122.3 18.2 72 694-766 11-85 (654)
157 PTZ00424 helicase 45; Provisio 98.9 3.8E-09 8.2E-14 123.0 8.9 64 131-207 317-381 (401)
158 PLN00206 DEAD-box ATP-dependen 98.9 6.4E-09 1.4E-13 124.1 10.8 64 131-207 418-482 (518)
159 KOG0926|consensus 98.9 4E-08 8.6E-13 113.0 16.4 224 707-952 265-506 (1172)
160 PRK05298 excinuclease ABC subu 98.9 1.8E-07 4E-12 113.9 22.6 79 916-1033 434-513 (652)
161 COG4889 Predicted helicase [Ge 98.9 3.1E-09 6.7E-14 122.6 6.8 125 698-830 161-316 (1518)
162 PRK11057 ATP-dependent DNA hel 98.8 2.1E-08 4.5E-13 121.8 13.5 68 131-211 286-354 (607)
163 TIGR00614 recQ_fam ATP-depende 98.8 3.1E-08 6.7E-13 117.0 13.8 67 131-210 276-343 (470)
164 PF00176 SNF2_N: SNF2 family N 98.8 3.7E-08 8E-13 109.7 13.7 163 702-875 1-184 (299)
165 PRK12902 secA preprotein trans 98.8 2.5E-07 5.5E-12 110.7 20.7 126 699-830 86-217 (939)
166 TIGR01970 DEAH_box_HrpB ATP-de 98.8 1.3E-07 2.8E-12 116.7 16.8 141 145-364 275-426 (819)
167 PRK11664 ATP-dependent RNA hel 98.7 2.2E-07 4.8E-12 115.0 18.3 153 133-363 267-428 (812)
168 PRK12903 secA preprotein trans 98.7 5.9E-07 1.3E-11 107.2 20.9 130 694-830 75-210 (925)
169 PRK11776 ATP-dependent RNA hel 98.7 3.8E-08 8.2E-13 116.4 10.9 160 5-203 145-352 (460)
170 PF02399 Herpes_ori_bp: Origin 98.7 3.9E-07 8.4E-12 108.1 18.9 148 714-875 49-201 (824)
171 PRK04537 ATP-dependent RNA hel 98.7 3.2E-08 6.9E-13 118.9 9.5 159 5-200 157-364 (572)
172 PRK01297 ATP-dependent RNA hel 98.7 4.5E-08 9.8E-13 116.1 10.6 45 4-49 234-279 (475)
173 KOG0925|consensus 98.7 2.6E-06 5.6E-11 93.5 21.8 226 702-950 50-276 (699)
174 KOG0390|consensus 98.7 1.6E-06 3.5E-11 103.3 21.7 162 698-875 238-423 (776)
175 PRK10590 ATP-dependent RNA hel 98.7 5.9E-08 1.3E-12 114.3 9.7 42 5-49 147-189 (456)
176 PRK04837 ATP-dependent RNA hel 98.6 6.2E-08 1.3E-12 113.3 9.1 56 133-201 307-363 (423)
177 TIGR01389 recQ ATP-dependent D 98.6 1.6E-07 3.5E-12 114.4 12.9 71 131-214 274-345 (591)
178 PRK14873 primosome assembly pr 98.6 5.6E-07 1.2E-11 108.5 16.6 130 718-866 164-304 (665)
179 PLN03137 ATP-dependent DNA hel 98.6 1.3E-07 2.9E-12 116.4 11.2 89 107-212 709-799 (1195)
180 KOG0953|consensus 98.6 1.3E-07 2.8E-12 105.2 9.6 181 4-210 272-486 (700)
181 KOG1000|consensus 98.6 2.7E-06 5.8E-11 93.6 19.2 151 699-866 199-349 (689)
182 PRK11192 ATP-dependent RNA hel 98.6 2.6E-07 5.7E-12 108.5 11.9 58 131-201 295-353 (434)
183 KOG0385|consensus 98.6 1.2E-06 2.7E-11 101.0 15.9 126 698-832 167-303 (971)
184 TIGR00643 recG ATP-dependent D 98.5 2.2E-07 4.9E-12 113.4 10.4 54 133-198 510-564 (630)
185 PTZ00110 helicase; Provisional 98.4 9E-07 2E-11 106.1 10.9 56 134-202 430-486 (545)
186 PRK10917 ATP-dependent DNA hel 98.4 6.8E-07 1.5E-11 109.9 9.8 55 133-199 533-588 (681)
187 PRK15483 type III restriction- 98.4 4.8E-06 1E-10 101.9 15.2 143 715-867 60-240 (986)
188 TIGR01587 cas3_core CRISPR-ass 98.4 8.8E-07 1.9E-11 101.4 8.5 56 133-201 280-337 (358)
189 PRK11634 ATP-dependent RNA hel 98.3 2.1E-06 4.5E-11 104.1 10.9 58 131-201 295-353 (629)
190 smart00489 DEXDc3 DEAD-like he 98.3 1.7E-06 3.8E-11 94.8 9.2 73 693-766 4-83 (289)
191 smart00488 DEXDc2 DEAD-like he 98.3 1.7E-06 3.8E-11 94.8 9.2 73 693-766 4-83 (289)
192 PF07517 SecA_DEAD: SecA DEAD- 98.3 3.9E-06 8.4E-11 89.4 11.1 127 699-831 78-210 (266)
193 TIGR00580 mfd transcription-re 98.2 4.5E-06 9.8E-11 104.4 10.4 55 133-200 714-770 (926)
194 PHA02653 RNA helicase NPH-II; 98.2 2.2E-05 4.7E-10 95.0 15.7 54 145-201 459-515 (675)
195 KOG0922|consensus 98.1 0.00011 2.3E-09 85.0 19.2 157 158-393 347-508 (674)
196 KOG0387|consensus 98.0 0.00021 4.5E-09 83.7 18.8 153 696-866 203-376 (923)
197 PF13086 AAA_11: AAA domain; P 98.0 2.9E-05 6.3E-10 82.9 11.3 67 699-766 2-75 (236)
198 PRK10689 transcription-repair 98.0 2.4E-05 5.2E-10 100.3 12.2 43 145-199 874-918 (1147)
199 KOG1002|consensus 98.0 4.2E-05 9.2E-10 84.2 12.1 166 699-879 185-373 (791)
200 cd00079 HELICc Helicase superf 98.0 1.2E-05 2.7E-10 77.0 7.1 79 916-1033 16-95 (131)
201 KOG0923|consensus 98.0 0.0012 2.6E-08 75.9 22.6 160 158-395 563-727 (902)
202 KOG0384|consensus 98.0 4.7E-05 1E-09 92.8 12.1 156 698-876 370-548 (1373)
203 COG1643 HrpA HrpA-like helicas 97.9 0.00017 3.6E-09 88.4 15.7 133 158-366 344-480 (845)
204 PF12340 DUF3638: Protein of u 97.9 0.00011 2.3E-09 75.9 11.8 132 699-832 24-186 (229)
205 PF02562 PhoH: PhoH-like prote 97.9 4.1E-05 8.9E-10 78.4 8.5 57 699-756 5-61 (205)
206 KOG4439|consensus 97.9 7E-05 1.5E-09 86.2 10.7 170 699-879 326-520 (901)
207 KOG1802|consensus 97.8 8.9E-05 1.9E-09 84.7 10.0 80 694-780 406-485 (935)
208 PF06862 DUF1253: Protein of u 97.8 0.0013 2.7E-08 75.0 19.0 241 744-1023 37-358 (442)
209 KOG0389|consensus 97.8 0.00012 2.5E-09 85.6 10.7 232 699-951 400-663 (941)
210 COG0610 Type I site-specific r 97.7 9.5E-05 2.1E-09 93.6 10.2 140 715-867 274-415 (962)
211 KOG0392|consensus 97.7 0.00073 1.6E-08 82.5 16.6 152 698-866 975-1139(1549)
212 PF13604 AAA_30: AAA domain; P 97.7 0.00027 5.9E-09 73.0 10.9 60 699-760 2-62 (196)
213 COG1205 Distinct helicase fami 97.6 0.00011 2.5E-09 91.4 8.4 44 5-48 193-240 (851)
214 KOG0326|consensus 97.5 0.00082 1.8E-08 70.6 11.5 180 2-221 222-454 (459)
215 TIGR00376 DNA helicase, putati 97.5 0.00066 1.4E-08 82.6 12.4 67 698-766 157-223 (637)
216 PF13245 AAA_19: Part of AAA d 97.4 0.00055 1.2E-08 58.5 7.6 59 706-764 2-62 (76)
217 PRK10536 hypothetical protein; 97.4 0.00038 8.3E-09 73.2 7.8 59 697-756 58-116 (262)
218 PF00271 Helicase_C: Helicase 97.4 0.00023 5E-09 61.4 5.1 43 133-186 35-78 (78)
219 PF13872 AAA_34: P-loop contai 97.4 0.0028 6E-08 68.0 14.0 160 699-866 38-221 (303)
220 PF00271 Helicase_C: Helicase 97.4 0.00014 3E-09 62.8 3.3 44 985-1033 7-50 (78)
221 KOG0924|consensus 97.3 0.027 5.9E-07 65.3 21.6 165 158-401 654-823 (1042)
222 COG0514 RecQ Superfamily II DN 97.2 0.0024 5.1E-08 75.1 12.1 91 107-214 259-351 (590)
223 cd00079 HELICc Helicase superf 97.2 0.0011 2.4E-08 63.4 7.4 51 132-196 79-131 (131)
224 PF09848 DUF2075: Uncharacteri 97.1 0.0014 3E-08 74.6 8.9 95 716-832 3-97 (352)
225 TIGR01447 recD exodeoxyribonuc 97.1 0.0048 1E-07 74.2 13.2 141 701-864 148-295 (586)
226 TIGR00603 rad25 DNA repair hel 97.1 0.0053 1.2E-07 74.5 13.4 38 144-190 554-592 (732)
227 TIGR02621 cas3_GSU0051 CRISPR- 97.0 0.0024 5.2E-08 78.4 10.2 52 133-197 338-389 (844)
228 COG3587 Restriction endonuclea 97.0 0.0029 6.2E-08 75.2 10.1 143 715-867 75-244 (985)
229 PF13401 AAA_22: AAA domain; P 97.0 0.0027 5.8E-08 60.9 8.0 25 713-737 3-27 (131)
230 PRK10875 recD exonuclease V su 96.8 0.0079 1.7E-07 72.5 12.2 142 700-864 154-301 (615)
231 KOG1803|consensus 96.8 0.0023 5.1E-08 73.5 7.2 66 698-765 185-250 (649)
232 KOG2340|consensus 96.8 0.0061 1.3E-07 68.6 10.0 148 698-846 216-443 (698)
233 KOG0920|consensus 96.8 0.022 4.8E-07 70.1 15.5 143 144-361 482-634 (924)
234 TIGR03158 cas3_cyano CRISPR-as 96.8 0.005 1.1E-07 70.1 9.7 47 5-51 143-192 (357)
235 COG4098 comFA Superfamily II D 96.8 0.018 3.9E-07 61.7 12.6 78 104-199 333-415 (441)
236 PF00580 UvrD-helicase: UvrD/R 96.8 0.0039 8.4E-08 69.8 8.5 122 699-828 1-125 (315)
237 TIGR01448 recD_rel helicase, p 96.8 0.011 2.5E-07 73.1 13.1 59 699-759 324-383 (720)
238 KOG0330|consensus 96.7 0.003 6.5E-08 68.5 6.6 52 144-207 362-414 (476)
239 COG1875 NYN ribonuclease and A 96.7 0.0073 1.6E-07 65.5 9.3 67 692-758 222-290 (436)
240 COG0513 SrmB Superfamily II DN 96.7 0.0066 1.4E-07 72.4 9.9 44 145-200 336-380 (513)
241 COG1200 RecG RecG-like helicas 96.6 0.0063 1.4E-07 71.5 9.2 57 133-201 535-592 (677)
242 KOG0343|consensus 96.6 0.0068 1.5E-07 68.5 8.9 179 5-212 213-434 (758)
243 PRK13889 conjugal transfer rel 96.6 0.015 3.2E-07 73.4 13.0 123 699-864 347-470 (988)
244 smart00490 HELICc helicase sup 96.6 0.0013 2.8E-08 57.0 2.7 44 985-1033 11-54 (82)
245 KOG0391|consensus 96.6 0.0074 1.6E-07 73.4 9.6 150 698-865 615-775 (1958)
246 TIGR00595 priA primosomal prot 96.6 0.017 3.7E-07 68.6 12.8 63 134-200 315-381 (505)
247 TIGR02768 TraA_Ti Ti-type conj 96.6 0.017 3.7E-07 71.9 13.4 122 699-862 353-474 (744)
248 PRK12723 flagellar biosynthesi 96.6 0.052 1.1E-06 61.7 15.7 126 714-873 174-304 (388)
249 PRK12901 secA preprotein trans 96.5 0.004 8.8E-08 76.5 7.0 126 699-830 170-302 (1112)
250 PHA02558 uvsW UvsW helicase; P 96.5 0.011 2.5E-07 70.5 10.7 41 4-50 219-259 (501)
251 cd00009 AAA The AAA+ (ATPases 96.4 0.024 5.2E-07 54.9 10.7 38 714-753 19-56 (151)
252 KOG1132|consensus 96.4 0.017 3.7E-07 69.3 10.7 77 689-766 13-132 (945)
253 smart00490 HELICc helicase sup 96.3 0.0031 6.8E-08 54.5 3.0 42 133-186 39-82 (82)
254 COG3421 Uncharacterized protei 96.2 0.012 2.7E-07 67.3 7.9 150 719-873 2-173 (812)
255 PRK09694 helicase Cas3; Provis 96.2 0.023 4.9E-07 71.2 10.6 41 134-187 624-664 (878)
256 PHA02533 17 large terminase pr 96.1 0.11 2.3E-06 62.0 15.7 149 699-864 60-209 (534)
257 PF14520 HHH_5: Helix-hairpin- 96.1 0.0069 1.5E-07 49.1 3.9 47 503-549 11-59 (60)
258 PRK14722 flhF flagellar biosyn 96.1 0.052 1.1E-06 61.2 12.0 123 712-867 135-259 (374)
259 KOG0345|consensus 96.0 0.045 9.8E-07 61.1 10.7 74 115-212 299-375 (567)
260 KOG0921|consensus 95.9 0.13 2.8E-06 61.8 14.3 149 713-876 392-545 (1282)
261 TIGR01547 phage_term_2 phage t 95.9 0.065 1.4E-06 62.1 12.2 136 716-867 3-142 (396)
262 PRK13826 Dtr system oriT relax 95.8 0.068 1.5E-06 68.0 12.9 123 699-864 382-505 (1102)
263 PF05970 PIF1: PIF1-like helic 95.8 0.041 8.9E-07 62.8 10.2 59 699-759 2-65 (364)
264 TIGR01075 uvrD DNA helicase II 95.6 0.035 7.5E-07 69.5 9.3 68 698-768 4-73 (715)
265 PF05876 Terminase_GpA: Phage 95.6 0.043 9.4E-07 65.9 9.4 139 698-846 16-165 (557)
266 PRK06526 transposase; Provisio 95.5 0.09 2E-06 56.5 10.8 46 711-759 95-140 (254)
267 COG1197 Mfd Transcription-repa 95.5 0.06 1.3E-06 67.4 10.3 89 82-199 816-912 (1139)
268 KOG1805|consensus 95.4 0.055 1.2E-06 65.7 9.4 122 697-831 668-809 (1100)
269 PF05621 TniB: Bacterial TniB 95.4 0.041 8.9E-07 59.4 7.6 111 715-861 62-186 (302)
270 PRK11773 uvrD DNA-dependent he 95.4 0.043 9.4E-07 68.6 9.0 68 698-768 9-78 (721)
271 smart00382 AAA ATPases associa 95.3 0.05 1.1E-06 52.2 7.5 43 714-758 2-44 (148)
272 KOG0298|consensus 95.3 0.071 1.5E-06 66.5 10.1 157 711-879 371-568 (1394)
273 PHA03368 DNA packaging termina 95.3 0.28 6E-06 58.3 14.3 135 713-866 253-391 (738)
274 TIGR00631 uvrb excinuclease AB 95.3 0.048 1E-06 66.7 8.6 58 133-200 494-553 (655)
275 KOG0388|consensus 95.3 0.05 1.1E-06 63.3 8.0 148 699-866 568-734 (1185)
276 COG0653 SecA Preprotein transl 95.2 0.05 1.1E-06 66.2 8.2 127 700-830 80-212 (822)
277 TIGR03015 pepcterm_ATPase puta 95.1 0.12 2.6E-06 56.4 10.5 35 699-733 24-62 (269)
278 PRK10919 ATP-dependent DNA hel 95.1 0.044 9.5E-07 67.8 7.7 68 699-769 3-72 (672)
279 PRK05703 flhF flagellar biosyn 95.1 0.5 1.1E-05 54.8 15.9 122 714-867 221-344 (424)
280 KOG0328|consensus 95.1 0.16 3.5E-06 53.0 10.2 61 134-207 319-380 (400)
281 PF00448 SRP54: SRP54-type pro 95.0 0.13 2.9E-06 52.9 9.9 122 716-867 3-127 (196)
282 KOG0342|consensus 94.9 0.21 4.6E-06 56.4 11.4 47 144-203 392-440 (543)
283 PRK14974 cell division protein 94.9 0.28 6.2E-06 54.8 12.6 123 715-867 141-266 (336)
284 PRK04296 thymidine kinase; Pro 94.9 0.041 8.9E-07 56.5 5.6 36 715-752 3-38 (190)
285 PRK08181 transposase; Validate 94.9 0.16 3.4E-06 55.0 10.2 58 699-759 88-148 (269)
286 KOG0386|consensus 94.9 0.035 7.6E-07 67.4 5.6 123 699-832 395-529 (1157)
287 COG1444 Predicted P-loop ATPas 94.9 0.39 8.5E-06 58.3 14.3 140 701-867 217-358 (758)
288 KOG4150|consensus 94.8 0.16 3.5E-06 57.8 10.1 39 168-207 610-648 (1034)
289 KOG0989|consensus 94.8 0.068 1.5E-06 57.0 6.8 46 815-867 126-171 (346)
290 PF00308 Bac_DnaA: Bacterial d 94.8 0.21 4.5E-06 52.6 10.5 106 716-867 36-142 (219)
291 PRK05298 excinuclease ABC subu 94.7 0.076 1.6E-06 65.3 8.2 58 132-199 497-556 (652)
292 PRK11889 flhF flagellar biosyn 94.7 0.75 1.6E-05 51.9 14.9 122 714-867 241-364 (436)
293 PHA03333 putative ATPase subun 94.6 0.99 2.1E-05 54.1 16.5 146 699-865 170-332 (752)
294 PRK13833 conjugal transfer pro 94.6 0.071 1.5E-06 59.1 6.8 59 698-757 128-187 (323)
295 cd01124 KaiC KaiC is a circadi 94.6 0.095 2.1E-06 53.6 7.4 45 717-764 2-46 (187)
296 PRK06893 DNA replication initi 94.5 0.25 5.5E-06 52.4 10.6 34 716-751 41-74 (229)
297 PRK11054 helD DNA helicase IV; 94.5 0.086 1.9E-06 64.8 7.9 78 698-779 196-275 (684)
298 COG1419 FlhF Flagellar GTP-bin 94.5 0.7 1.5E-05 52.0 14.1 126 714-873 203-330 (407)
299 PF00004 AAA: ATPase family as 94.4 0.15 3.3E-06 48.5 8.1 17 717-733 1-17 (132)
300 TIGR02881 spore_V_K stage V sp 94.4 0.31 6.7E-06 52.9 11.4 21 715-735 43-63 (261)
301 PF05127 Helicase_RecD: Helica 94.4 0.018 3.9E-07 57.6 1.5 125 718-867 1-125 (177)
302 PRK13894 conjugal transfer ATP 94.4 0.069 1.5E-06 59.3 6.3 57 699-756 133-190 (319)
303 TIGR01073 pcrA ATP-dependent D 94.4 0.1 2.2E-06 65.6 8.6 67 698-767 4-72 (726)
304 PRK08727 hypothetical protein; 94.4 0.31 6.7E-06 51.9 10.9 35 715-751 42-76 (233)
305 COG0553 HepA Superfamily II DN 94.4 0.096 2.1E-06 67.7 8.5 154 698-865 338-510 (866)
306 TIGR02760 TraI_TIGR conjugativ 94.3 1.3 2.9E-05 61.0 19.3 217 699-955 430-654 (1960)
307 KOG1015|consensus 94.3 0.18 4E-06 60.8 9.5 139 716-865 698-859 (1567)
308 PRK07952 DNA replication prote 94.3 0.87 1.9E-05 48.5 14.0 56 700-758 78-140 (244)
309 TIGR02782 TrbB_P P-type conjug 94.3 0.11 2.4E-06 57.3 7.4 58 699-757 117-175 (299)
310 TIGR03877 thermo_KaiC_1 KaiC d 94.2 0.41 8.8E-06 51.1 11.5 49 713-764 20-68 (237)
311 TIGR03499 FlhF flagellar biosy 94.2 0.25 5.3E-06 54.2 9.9 86 714-827 194-281 (282)
312 PRK12377 putative replication 94.2 0.52 1.1E-05 50.4 12.0 44 714-760 101-144 (248)
313 COG1061 SSL2 DNA or RNA helica 94.2 0.19 4.1E-06 58.9 9.5 38 6-49 145-182 (442)
314 PRK00149 dnaA chromosomal repl 94.1 0.21 4.6E-06 58.8 10.0 44 715-759 149-192 (450)
315 COG2256 MGS1 ATPase related to 94.1 0.3 6.5E-06 54.3 10.1 37 715-756 49-85 (436)
316 TIGR01074 rep ATP-dependent DN 94.0 0.16 3.6E-06 63.2 9.2 69 699-770 2-72 (664)
317 PRK14712 conjugal transfer nic 94.0 0.42 9.2E-06 63.2 12.9 62 698-759 835-899 (1623)
318 PLN03025 replication factor C 94.0 0.36 7.9E-06 54.1 11.0 21 715-735 35-55 (319)
319 PRK08903 DnaA regulatory inact 93.9 0.36 7.7E-06 51.2 10.2 37 713-751 41-77 (227)
320 PRK14087 dnaA chromosomal repl 93.8 0.66 1.4E-05 54.4 13.1 47 715-763 142-189 (450)
321 cd01120 RecA-like_NTPases RecA 93.8 0.34 7.3E-06 47.9 9.4 39 717-757 2-40 (165)
322 cd00984 DnaB_C DnaB helicase C 93.8 0.54 1.2E-05 50.3 11.6 138 713-863 12-171 (242)
323 COG4962 CpaF Flp pilus assembl 93.6 0.19 4E-06 55.0 7.4 62 692-758 151-214 (355)
324 KOG0351|consensus 93.6 0.25 5.4E-06 62.1 9.5 90 106-212 513-604 (941)
325 PTZ00112 origin recognition co 93.5 0.69 1.5E-05 56.8 12.5 19 716-734 782-801 (1164)
326 CHL00181 cbbX CbbX; Provisiona 93.5 0.81 1.8E-05 50.3 12.4 23 714-736 59-81 (287)
327 KOG0925|consensus 93.5 0.57 1.2E-05 52.8 10.9 59 314-378 433-491 (699)
328 PRK12402 replication factor C 93.5 0.57 1.2E-05 53.0 11.7 33 703-735 23-57 (337)
329 TIGR02785 addA_Gpos recombinat 93.4 0.25 5.3E-06 65.5 9.7 123 699-829 2-126 (1232)
330 TIGR00362 DnaA chromosomal rep 93.3 0.31 6.7E-06 56.7 9.3 43 715-758 137-179 (405)
331 PRK08084 DNA replication initi 93.3 1.3 2.9E-05 47.1 13.4 37 714-752 45-81 (235)
332 TIGR02760 TraI_TIGR conjugativ 93.3 0.54 1.2E-05 64.7 12.7 61 698-759 1019-1083(1960)
333 PRK14088 dnaA chromosomal repl 93.2 0.64 1.4E-05 54.4 11.7 38 715-752 131-168 (440)
334 PRK00411 cdc6 cell division co 93.2 0.5 1.1E-05 54.8 10.9 37 714-751 55-92 (394)
335 PRK05707 DNA polymerase III su 93.1 0.58 1.3E-05 52.4 10.7 41 699-739 4-47 (328)
336 TIGR02880 cbbX_cfxQ probable R 93.1 0.95 2.1E-05 49.7 12.1 21 714-734 58-78 (284)
337 PF03796 DnaB_C: DnaB-like hel 93.0 1.5 3.3E-05 47.4 13.6 143 713-864 18-179 (259)
338 PRK14956 DNA polymerase III su 93.0 0.47 1E-05 55.2 9.9 21 717-737 43-63 (484)
339 TIGR03420 DnaA_homol_Hda DnaA 93.0 0.71 1.5E-05 48.8 10.8 24 713-736 37-60 (226)
340 PRK13709 conjugal transfer nic 92.9 0.92 2E-05 61.0 13.4 62 698-759 967-1031(1747)
341 KOG0335|consensus 92.8 0.59 1.3E-05 53.6 10.0 30 5-34 224-255 (482)
342 KOG4284|consensus 92.7 0.4 8.7E-06 55.8 8.5 34 171-206 352-386 (980)
343 KOG1001|consensus 92.7 0.49 1.1E-05 57.6 10.0 106 717-832 155-268 (674)
344 PRK05642 DNA replication initi 92.7 0.74 1.6E-05 49.0 10.3 36 715-752 46-81 (234)
345 PRK14721 flhF flagellar biosyn 92.6 2.3 4.9E-05 49.1 14.6 121 713-866 190-312 (420)
346 KOG0331|consensus 92.5 0.56 1.2E-05 54.6 9.6 45 144-200 403-448 (519)
347 KOG0991|consensus 92.5 0.2 4.4E-06 51.2 5.2 20 715-734 49-68 (333)
348 PRK14723 flhF flagellar biosyn 92.4 1.1 2.3E-05 55.2 12.3 120 714-866 185-306 (767)
349 TIGR02928 orc1/cdc6 family rep 92.3 1.5 3.3E-05 50.2 13.1 20 715-734 41-60 (365)
350 PRK05973 replicative DNA helic 92.3 0.96 2.1E-05 47.9 10.3 50 713-765 63-112 (237)
351 PRK04328 hypothetical protein; 92.3 1.4 3.1E-05 47.3 12.0 37 713-751 22-58 (249)
352 PRK06921 hypothetical protein; 92.2 0.73 1.6E-05 50.0 9.6 45 713-759 116-160 (266)
353 PRK07994 DNA polymerase III su 92.2 1.2 2.7E-05 54.0 12.4 40 816-862 117-156 (647)
354 TIGR03714 secA2 accessory Sec 92.2 2 4.3E-05 53.0 14.1 33 460-492 714-746 (762)
355 cd01122 GP4d_helicase GP4d_hel 92.2 0.92 2E-05 49.5 10.6 39 713-752 29-67 (271)
356 PRK09200 preprotein translocas 92.2 1.4 2.9E-05 54.8 12.8 33 460-492 717-749 (790)
357 PRK12766 50S ribosomal protein 92.1 0.27 5.9E-06 50.6 5.8 53 487-549 3-57 (232)
358 PRK14963 DNA polymerase III su 92.1 0.86 1.9E-05 54.1 10.8 21 717-737 39-59 (504)
359 PRK12727 flagellar biosynthesi 92.0 1.7 3.8E-05 51.0 12.8 120 713-866 349-470 (559)
360 TIGR03600 phage_DnaB phage rep 91.9 1 2.3E-05 52.6 11.3 143 713-864 193-353 (421)
361 PF03354 Terminase_1: Phage Te 91.9 2.4 5.3E-05 50.4 14.4 70 701-770 1-80 (477)
362 PRK06645 DNA polymerase III su 91.8 0.93 2E-05 53.7 10.6 23 716-738 45-67 (507)
363 PRK14964 DNA polymerase III su 91.8 1.2 2.5E-05 52.5 11.2 117 716-862 37-153 (491)
364 COG1203 CRISPR-associated heli 91.8 0.28 6E-06 61.4 6.6 29 172-200 522-550 (733)
365 PRK14086 dnaA chromosomal repl 91.7 0.7 1.5E-05 55.4 9.4 44 716-760 316-359 (617)
366 PF13177 DNA_pol3_delta2: DNA 91.6 1.8 3.9E-05 43.1 11.0 123 716-866 21-143 (162)
367 PRK11823 DNA repair protein Ra 91.6 1.4 2.9E-05 51.8 11.7 119 713-861 79-204 (446)
368 PRK06995 flhF flagellar biosyn 91.6 3.6 7.7E-05 48.3 14.9 54 713-766 255-310 (484)
369 COG1474 CDC6 Cdc6-related prot 91.6 1.6 3.5E-05 49.5 11.9 37 714-750 42-78 (366)
370 COG0593 DnaA ATPase involved i 91.5 1.2 2.6E-05 50.6 10.6 40 714-753 113-152 (408)
371 PF01695 IstB_IS21: IstB-like 91.5 0.41 8.9E-06 48.5 6.3 46 711-759 44-89 (178)
372 PRK12323 DNA polymerase III su 91.5 0.83 1.8E-05 54.8 9.6 42 816-864 122-163 (700)
373 PRK07004 replicative DNA helic 91.5 1.1 2.3E-05 52.9 10.6 139 713-863 212-372 (460)
374 PRK05748 replicative DNA helic 91.4 0.95 2E-05 53.4 10.3 144 713-865 202-365 (448)
375 PRK05636 replicative DNA helic 91.4 1.3 2.8E-05 52.6 11.3 138 713-863 264-423 (505)
376 PRK08506 replicative DNA helic 91.4 1.1 2.3E-05 53.1 10.6 142 713-864 191-351 (472)
377 COG1484 DnaC DNA replication p 91.4 0.73 1.6E-05 49.6 8.4 67 695-764 80-152 (254)
378 COG0470 HolB ATPase involved i 91.3 0.83 1.8E-05 51.2 9.4 124 714-863 23-147 (325)
379 PRK14961 DNA polymerase III su 91.3 1.4 3E-05 50.3 11.2 40 816-862 117-156 (363)
380 PRK12899 secA preprotein trans 91.3 0.65 1.4E-05 57.7 8.7 127 857-1033 505-633 (970)
381 PRK13851 type IV secretion sys 91.3 0.33 7.1E-06 54.5 5.8 52 703-757 151-202 (344)
382 PRK12726 flagellar biosynthesi 91.2 1.5 3.2E-05 49.4 10.8 129 713-874 205-335 (407)
383 PRK13342 recombination factor 91.1 0.78 1.7E-05 53.4 9.1 19 715-733 37-55 (413)
384 PRK09111 DNA polymerase III su 91.1 1.3 2.8E-05 53.7 11.0 43 813-862 127-169 (598)
385 KOG0332|consensus 91.1 3.1 6.8E-05 45.7 12.5 59 134-200 383-443 (477)
386 cd01130 VirB11-like_ATPase Typ 91.1 0.39 8.4E-06 49.2 5.8 53 698-753 9-61 (186)
387 PRK06067 flagellar accessory p 91.0 3.2 6.8E-05 44.2 12.9 39 713-753 24-62 (234)
388 cd01121 Sms Sms (bacterial rad 90.9 2 4.3E-05 49.0 11.8 119 713-861 81-206 (372)
389 PRK14955 DNA polymerase III su 90.9 1.1 2.4E-05 51.8 10.0 22 717-738 41-62 (397)
390 PRK14958 DNA polymerase III su 90.9 1.1 2.4E-05 53.3 10.1 39 817-862 118-156 (509)
391 PRK14960 DNA polymerase III su 90.9 1.1 2.3E-05 54.0 9.8 22 716-737 39-60 (702)
392 PRK08691 DNA polymerase III su 90.8 1.3 2.8E-05 53.8 10.4 22 716-737 40-61 (709)
393 KOG0333|consensus 90.7 1.9 4.1E-05 49.4 10.9 45 145-201 580-625 (673)
394 TIGR00665 DnaB replicative DNA 90.7 1.7 3.6E-05 51.1 11.4 142 713-864 194-354 (434)
395 PRK09165 replicative DNA helic 90.7 1.7 3.8E-05 51.6 11.5 142 713-863 216-391 (497)
396 KOG0353|consensus 90.7 0.76 1.7E-05 49.8 7.5 42 6-48 214-258 (695)
397 PRK12422 chromosomal replicati 90.6 1 2.3E-05 52.6 9.4 41 715-758 142-182 (445)
398 PRK08116 hypothetical protein; 90.6 1.9 4.2E-05 46.8 10.9 41 716-759 116-156 (268)
399 PRK08533 flagellar accessory p 90.5 0.61 1.3E-05 49.5 6.8 39 713-753 23-61 (230)
400 PRK07003 DNA polymerase III su 90.5 2 4.3E-05 52.5 11.5 40 817-863 118-157 (830)
401 PRK04914 ATP-dependent helicas 90.4 2.2 4.8E-05 54.3 12.6 36 144-190 558-595 (956)
402 PRK08769 DNA polymerase III su 90.3 2.9 6.4E-05 46.4 12.1 43 697-739 3-51 (319)
403 KOG0336|consensus 90.3 1.8 3.8E-05 47.9 9.9 52 144-207 527-579 (629)
404 PRK14954 DNA polymerase III su 90.3 1.1 2.5E-05 54.2 9.6 55 801-862 110-164 (620)
405 PRK14949 DNA polymerase III su 90.3 1.1 2.5E-05 55.6 9.5 38 817-861 118-155 (944)
406 PRK06904 replicative DNA helic 90.1 1.6 3.5E-05 51.5 10.4 143 712-863 219-382 (472)
407 KOG1131|consensus 90.1 1.5 3.2E-05 50.1 9.4 76 691-766 9-89 (755)
408 PRK00440 rfc replication facto 90.1 2 4.4E-05 48.0 11.0 19 715-733 39-57 (319)
409 TIGR01425 SRP54_euk signal rec 90.1 4.1 8.8E-05 47.1 13.3 48 716-765 102-151 (429)
410 PF05496 RuvB_N: Holliday junc 90.0 0.74 1.6E-05 47.7 6.6 19 715-733 51-69 (233)
411 TIGR02012 tigrfam_recA protein 90.0 0.73 1.6E-05 51.0 7.1 44 713-758 54-97 (321)
412 PRK08760 replicative DNA helic 90.0 1.5 3.2E-05 51.9 10.1 142 713-864 228-388 (476)
413 PRK00771 signal recognition pa 90.0 2.3 5.1E-05 49.4 11.4 49 714-764 95-145 (437)
414 PHA02542 41 41 helicase; Provi 89.9 1.7 3.8E-05 51.1 10.5 139 713-864 189-353 (473)
415 PRK06321 replicative DNA helic 89.9 2.1 4.6E-05 50.4 11.2 142 713-864 225-388 (472)
416 KOG1133|consensus 89.9 0.43 9.3E-06 56.2 5.3 46 694-740 12-60 (821)
417 PRK12724 flagellar biosynthesi 89.9 8.3 0.00018 44.3 15.4 51 714-765 223-275 (432)
418 PRK04195 replication factor C 89.6 2.4 5.2E-05 50.5 11.6 20 714-733 39-58 (482)
419 PRK04301 radA DNA repair and r 89.5 0.54 1.2E-05 52.6 5.7 55 486-550 5-61 (317)
420 PRK13341 recombination factor 89.5 1.7 3.6E-05 54.0 10.3 20 715-734 53-72 (725)
421 cd00983 recA RecA is a bacter 89.4 0.68 1.5E-05 51.3 6.2 43 714-758 55-97 (325)
422 COG1111 MPH1 ERCC4-like helica 89.2 1.4 3E-05 50.5 8.4 50 145-207 438-490 (542)
423 PRK13900 type IV secretion sys 89.2 0.46 1E-05 53.2 4.8 51 704-757 150-200 (332)
424 PHA02544 44 clamp loader, smal 89.2 2.6 5.6E-05 47.2 10.9 29 705-733 31-62 (316)
425 PRK14962 DNA polymerase III su 89.1 2.7 5.9E-05 49.5 11.2 20 717-736 39-58 (472)
426 PRK09354 recA recombinase A; P 88.9 0.95 2.1E-05 50.6 7.0 43 714-758 60-102 (349)
427 KOG0926|consensus 88.9 0.34 7.4E-06 57.7 3.5 46 314-364 750-795 (1172)
428 PF05729 NACHT: NACHT domain 88.9 3.1 6.7E-05 41.1 10.2 44 716-759 2-48 (166)
429 PRK14952 DNA polymerase III su 88.8 2.2 4.7E-05 51.5 10.4 41 815-862 115-155 (584)
430 PRK14951 DNA polymerase III su 88.7 3.3 7.1E-05 50.3 11.8 22 717-738 41-62 (618)
431 TIGR00678 holB DNA polymerase 88.7 2.1 4.5E-05 43.8 9.0 55 801-862 79-133 (188)
432 PF03237 Terminase_6: Terminas 88.7 6.6 0.00014 44.8 14.2 103 718-832 1-111 (384)
433 PRK10416 signal recognition pa 88.6 6.4 0.00014 43.9 13.3 128 713-867 113-246 (318)
434 COG0556 UvrB Helicase subunit 88.5 1.6 3.4E-05 50.3 8.2 46 145-199 509-556 (663)
435 PRK14969 DNA polymerase III su 88.5 2.8 6.1E-05 50.2 11.1 41 815-862 116-156 (527)
436 PRK07764 DNA polymerase III su 88.5 2.6 5.6E-05 53.1 11.1 40 816-862 118-157 (824)
437 PRK12901 secA preprotein trans 88.5 1.6 3.6E-05 54.6 9.0 127 857-1033 565-693 (1112)
438 TIGR03881 KaiC_arch_4 KaiC dom 88.4 4.7 0.0001 42.6 11.8 38 713-752 19-56 (229)
439 PRK05896 DNA polymerase III su 88.4 2 4.4E-05 51.5 9.6 23 716-738 40-62 (605)
440 PRK08006 replicative DNA helic 88.2 3.1 6.8E-05 49.0 11.1 142 713-863 223-384 (471)
441 PRK05595 replicative DNA helic 88.2 1.8 3.9E-05 51.0 9.0 142 713-864 200-360 (444)
442 COG1219 ClpX ATP-dependent pro 88.0 0.32 7E-06 52.1 2.4 21 713-733 96-116 (408)
443 PF00437 T2SE: Type II/IV secr 88.0 0.55 1.2E-05 51.3 4.3 54 701-756 114-167 (270)
444 PRK13766 Hef nuclease; Provisi 87.9 1.5 3.4E-05 55.7 9.0 46 503-549 721-768 (773)
445 PRK14957 DNA polymerase III su 87.9 4 8.6E-05 48.9 11.6 41 815-862 116-156 (546)
446 KOG2228|consensus 87.8 10 0.00022 41.6 13.3 50 820-873 139-189 (408)
447 TIGR02237 recomb_radB DNA repa 87.8 2.1 4.5E-05 44.7 8.4 39 713-753 11-49 (209)
448 COG0552 FtsY Signal recognitio 87.6 8.1 0.00018 42.5 12.7 136 716-878 141-287 (340)
449 cd00268 DEADc DEAD-box helicas 87.6 0.26 5.6E-06 51.1 1.4 45 4-51 140-185 (203)
450 PRK08840 replicative DNA helic 87.5 3.4 7.3E-05 48.6 10.7 142 713-863 216-377 (464)
451 PRK06964 DNA polymerase III su 87.5 3.9 8.4E-05 46.0 10.7 41 699-739 2-46 (342)
452 KOG0739|consensus 87.4 3.9 8.4E-05 43.7 9.7 40 716-761 168-207 (439)
453 PRK09112 DNA polymerase III su 87.4 5.5 0.00012 45.1 12.0 42 815-863 138-179 (351)
454 PHA03372 DNA packaging termina 87.3 7.8 0.00017 46.0 13.1 131 714-865 202-337 (668)
455 PRK06731 flhF flagellar biosyn 87.2 9.6 0.00021 41.3 13.2 121 713-866 74-197 (270)
456 COG1435 Tdk Thymidine kinase [ 87.2 4.8 0.0001 40.7 9.9 93 714-832 4-96 (201)
457 PRK14959 DNA polymerase III su 87.2 3.6 7.8E-05 49.7 10.8 33 706-738 27-62 (624)
458 COG2805 PilT Tfp pilus assembl 87.2 1.7 3.7E-05 46.7 7.1 37 714-751 125-161 (353)
459 cd01393 recA_like RecA is a b 87.0 1.2 2.6E-05 47.0 6.2 102 713-830 18-126 (226)
460 COG2804 PulE Type II secretory 87.0 0.64 1.4E-05 53.6 4.1 32 699-730 242-274 (500)
461 PRK12906 secA preprotein trans 86.8 6.8 0.00015 48.6 13.0 32 461-492 733-764 (796)
462 PRK14948 DNA polymerase III su 86.8 4.8 0.0001 49.2 11.8 24 715-738 39-62 (620)
463 COG2255 RuvB Holliday junction 86.8 2 4.4E-05 45.7 7.3 18 715-732 53-70 (332)
464 cd01129 PulE-GspE PulE/GspE Th 86.7 1.4 3E-05 47.9 6.4 55 699-755 64-119 (264)
465 PRK14965 DNA polymerase III su 86.6 6.1 0.00013 48.0 12.5 42 814-862 115-156 (576)
466 PF05707 Zot: Zonular occluden 86.4 1 2.2E-05 46.4 5.0 47 818-867 79-128 (193)
467 PRK09183 transposase/IS protei 86.3 1.5 3.2E-05 47.4 6.4 46 711-759 99-144 (259)
468 COG1702 PhoH Phosphate starvat 86.1 0.47 1E-05 51.9 2.4 53 699-752 129-181 (348)
469 PRK08451 DNA polymerase III su 86.1 5.1 0.00011 47.7 11.2 41 815-862 114-154 (535)
470 KOG0344|consensus 85.9 4 8.7E-05 47.6 9.7 74 107-201 417-496 (593)
471 TIGR01954 nusA_Cterm_rpt trans 85.9 1.7 3.7E-05 33.5 4.9 45 505-549 1-47 (50)
472 cd01131 PilT Pilus retraction 85.9 0.99 2.2E-05 46.7 4.7 40 716-756 3-42 (198)
473 KOG1513|consensus 85.9 0.73 1.6E-05 54.8 3.9 156 699-865 265-454 (1300)
474 KOG2373|consensus 85.8 1 2.3E-05 48.7 4.7 43 714-758 273-318 (514)
475 cd01123 Rad51_DMC1_radA Rad51_ 85.8 1.3 2.9E-05 47.0 5.8 40 713-752 18-61 (235)
476 PRK12900 secA preprotein trans 85.6 3.9 8.5E-05 51.3 10.1 33 460-492 883-915 (1025)
477 TIGR03878 thermo_KaiC_2 KaiC d 85.6 6.1 0.00013 42.7 10.8 37 713-751 35-71 (259)
478 PRK05986 cob(I)alamin adenolsy 85.6 4.3 9.3E-05 41.3 8.8 40 713-754 21-60 (191)
479 PRK07940 DNA polymerase III su 85.5 2.4 5.2E-05 48.7 7.9 21 716-736 38-58 (394)
480 PRK06871 DNA polymerase III su 85.5 6.3 0.00014 44.0 10.9 41 699-739 3-49 (325)
481 KOG2028|consensus 85.5 1.7 3.6E-05 47.6 6.0 54 704-759 150-205 (554)
482 TIGR02397 dnaX_nterm DNA polym 85.5 6.7 0.00015 44.6 11.7 20 716-735 38-57 (355)
483 TIGR00959 ffh signal recogniti 85.4 5.5 0.00012 46.2 10.7 50 716-766 101-152 (428)
484 cd01126 TraG_VirD4 The TraG/Tr 85.3 0.67 1.5E-05 53.5 3.4 57 716-781 1-57 (384)
485 COG1110 Reverse gyrase [DNA re 85.2 2.2 4.7E-05 53.0 7.5 68 926-1025 124-191 (1187)
486 PRK05563 DNA polymerase III su 85.1 5.9 0.00013 47.9 11.4 21 716-736 40-60 (559)
487 KOG0339|consensus 85.1 8.9 0.00019 44.0 11.6 169 5-203 368-578 (731)
488 TIGR00963 secA preprotein tran 85.1 7.9 0.00017 47.6 12.2 52 169-222 488-551 (745)
489 TIGR03689 pup_AAA proteasome A 85.1 3.8 8.2E-05 48.5 9.4 20 713-732 215-234 (512)
490 TIGR01420 pilT_fam pilus retra 85.1 1.6 3.5E-05 49.3 6.2 43 713-756 121-163 (343)
491 PRK09361 radB DNA repair and r 85.0 3.3 7.1E-05 43.7 8.3 39 713-753 22-60 (225)
492 TIGR03819 heli_sec_ATPase heli 85.0 1.5 3.3E-05 49.3 5.9 55 699-756 163-217 (340)
493 TIGR02236 recomb_radA DNA repa 84.9 1.4 3.1E-05 49.1 5.7 48 503-550 5-54 (310)
494 COG0630 VirB11 Type IV secreto 84.9 1.4 3.1E-05 48.9 5.5 57 697-756 126-182 (312)
495 PRK14950 DNA polymerase III su 84.6 6.6 0.00014 48.0 11.6 19 717-735 41-59 (585)
496 PRK13897 type IV secretion sys 84.5 1.2 2.6E-05 53.9 5.0 59 713-780 157-215 (606)
497 COG3973 Superfamily I DNA and 84.4 2.3 5E-05 49.7 7.0 62 699-762 213-278 (747)
498 TIGR03117 cas_csf4 CRISPR-asso 84.4 5.2 0.00011 48.6 10.4 66 926-1032 469-538 (636)
499 TIGR02525 plasmid_TraJ plasmid 84.3 2 4.3E-05 48.8 6.5 45 711-756 146-191 (372)
500 TIGR02788 VirB11 P-type DNA tr 84.3 1.5 3.3E-05 48.8 5.5 49 704-755 134-182 (308)
No 1
>KOG0952|consensus
Probab=100.00 E-value=1.7e-144 Score=1239.45 Aligned_cols=928 Identities=51% Similarity=0.813 Sum_probs=846.8
Q ss_pred CccccccccEEEEeeeecccCCCCchHHHHHHhhhhcccc----ceeecccchhh----h----------hhHHHhhccc
Q psy13788 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQ----EVFKGVKSLNR----I----------QSLVYDTAYH 62 (1034)
Q Consensus 1 ~~~~~~~v~~vViDEvH~l~d~RG~~le~li~~~~~~~~~----~~~~~~~~~~~----~----------~~~~~~~~~~ 62 (1034)
|+++.+.|++|||||||||+|+|||++|.+++|++|+++. .+|+|+|++.+ + +-+.|+..||
T Consensus 232 d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 232 DSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred chhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeeccccc
Confidence 5678999999999999999999999999999999998864 67899988443 1 1223567777
Q ss_pred c------------------------------------CCc--eEEeccCCcchhHHHHHHHHHHHHHH---hhcc--ccc
Q psy13788 63 T------------------------------------NEN--LLICAPTGAGKTNVAMLTIAHQIKQH---ISQG--TEM 99 (1034)
Q Consensus 63 ~------------------------------------~~~--~~v~~~~~~~k~~~~~~~~~~~~~~~---~~~~--~~~ 99 (1034)
| +.+ |||++|+++.+++..+.+.+....+. +.+. ..+
T Consensus 312 PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l 391 (1230)
T KOG0952|consen 312 PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQL 391 (1230)
T ss_pred ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHH
Confidence 5 223 55666777777776655544332110 1100 000
Q ss_pred ee-ccccc-eecchhH-----HHHHHhhh-cCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeec
Q psy13788 100 YN-AKHGC-YVHIGIL-----DVLQIFGR-AGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHI 170 (1034)
Q Consensus 100 ~~-~~~g~-~~h~~~~-----~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~ 170 (1034)
.. -++|+ +||||++ -++..|.. ...+.+||+||++ |||||| .||||||+.||++.|++.++
T Consensus 392 ~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAw----------GVNLPA~aViIKGT~~ydsskg~f~dl 461 (1230)
T KOG0952|consen 392 KELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAW----------GVNLPAYAVIIKGTQVYDSSKGSFVDL 461 (1230)
T ss_pred HHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeee----------ccCCcceEEEecCCcccccccCceeee
Confidence 00 13677 8899998 24556644 3455668888877 899999 99999999999999999999
Q ss_pred ChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHhcCCcceecccccchHHHHhhhhhcccccchhhHHHHHHHHH
Q psy13788 171 GILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYI 250 (1034)
Q Consensus 171 ~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~~~~~i~s~l~~~~~~~ln~e~~~~~~~~~~~~~~~~~~~~ 250 (1034)
+++|++||+|||||||||+.|++||||+.+++++|.++++++.||||+|+.+|.|+|||||
T Consensus 462 gilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi------------------- 522 (1230)
T KOG0952|consen 462 GILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEI------------------- 522 (1230)
T ss_pred hHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhhe-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHhhhcCceE
Q psy13788 251 NFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIR 330 (1034)
Q Consensus 251 ~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~ 330 (1034)
++||++|+++|++||+|||+|+||+|||..||+.++++..||.++.+..++|..++..|.+..||.
T Consensus 523 --------------~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~ 588 (1230)
T KOG0952|consen 523 --------------SLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIR 588 (1230)
T ss_pred --------------eeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhhhHHHHHHhhhccccCCCC
Q psy13788 331 FNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRG 410 (1034)
Q Consensus 331 ~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l~~~~~~~~~~~ 410 (1034)
+|..++.+.+|++||+||+|||+++||+.|++..++.+++.++|+++|+|.||+.+++|++|++++++|+...+.....+
T Consensus 589 ~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~~~~~~ 668 (1230)
T KOG0952|consen 589 FDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSCEKYPFG 668 (1230)
T ss_pred EecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999998899999999999999999999999999999999998755544433
Q ss_pred CCCCcchhHHHHHHHHHhCCCCCCcChHhhHHHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccCCCCCccc
Q psy13788 411 GSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLR 490 (1034)
Q Consensus 411 ~~~~~~~Kv~~LLqa~i~~~~~~~~~l~gd~~~i~~~a~rll~al~ei~~~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~ 490 (1034)
. ...|+++++|+||++..+.+|+|.+|..|+.+|+.||.+++++++...+|+..+..++.||+||+.++|...+||.
T Consensus 669 ~---~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~ier~mw~~~~~l~ 745 (1230)
T KOG0952|consen 669 G---EKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRIERRMWDFFIPLK 745 (1230)
T ss_pred c---cchhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3 2899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCHHHHHHHHhcCCCHHHHhcCCHHHHHhhhcCchhHHHHHHHhhcCCcceEEEEEEeeccceEEE
Q psy13788 491 QIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKI 570 (1034)
Q Consensus 491 ql~~~~~~~~~~p~i~~~~~~~L~~~g~t~~~l~~~~~~el~~~l~~~~~g~~i~~~~~~~P~l~~~~~~~pit~~~l~v 570 (1034)
|+ +.+.. ++ ++.+. .+..+..++++.+..+.+.| .+.+..+|.+++++.++|+|++++++
T Consensus 746 qf----------~~~~~---~~-~~~~~---~l~~L~~~~~g~~w~~~~~~---~k~l~~ip~v~v~a~~~p~t~~vlri 805 (1230)
T KOG0952|consen 746 QF----------TLLLN---RK-ERKKL---TLLLLRKDELGELWHNVPYG---LKQLSGIPLVNVEALIQPITRNVLRI 805 (1230)
T ss_pred cC----------Ccccc---hh-hhhcc---hHHhhhhhhhccccccCchh---hhhhccCCceehhhhhccchhhhhee
Confidence 99 55444 33 33333 67777888999999888787 89999999999999999999999999
Q ss_pred EEEEEeCCCCCccCCCCCCCcEEEEEEcCCCCeeEEEeeEEeecccccccCceeEEEEeecCCCCCCceEEEeecccccc
Q psy13788 571 HLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLG 650 (1034)
Q Consensus 571 ~l~~~~~~~~~~~~~~~~~e~~~l~v~D~~~~~i~~~~~~~l~~~~~~~~~~~~l~f~vpl~~p~p~~~~i~~~Sd~wlg 650 (1034)
.+.++|+|.|+.++||+..+. +|++|++.+.++|.+.+.+++++. ++.+.+.|++|+++|+|+++.++..|+.|++
T Consensus 806 ~~~~~~~f~w~~~~hg~~g~~--i~~ed~~~~~i~h~e~~~~~~~~~--~~s~~lvf~ipis~pLps~~~~~~~s~~~l~ 881 (1230)
T KOG0952|consen 806 EVAITPDFEWNDGIHGKAGQP--IFKEDSSLLPILHIEVFLVNCKKV--NESQLLVFTIPISDPLPSQIRHRAVSDNWLG 881 (1230)
T ss_pred eeccCCceEEecccccccCce--eEeecCCCCcceeeeeehhhhhhh--hhhhheeEEeecccCCccceEEeeecccccC
Confidence 999999999999999985444 899999999999999999999886 5789999999999999999999999999999
Q ss_pred ccccccccccccccCCCCCCCCccccCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHH
Q psy13788 651 SVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIA 730 (1034)
Q Consensus 651 ~e~~~~vs~~~l~~p~~~~~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~ 730 (1034)
++...++++.++++|...++.++++++.|++..+|....++..++ .++|.|++.|..+++.+.++++.+|||+|||.+
T Consensus 882 ~e~~~~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~--~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ 959 (1230)
T KOG0952|consen 882 AETVYPLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFEALYK--YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVV 959 (1230)
T ss_pred CceeccccccceeccccccccccccccCCCcchhhccccHHHhhc--ccCCccceEEEEEeecchhhhhcCCccCcchhH
Confidence 999999999999999999999999999999999999999999887 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhcc
Q psy13788 731 AEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSW 810 (1034)
Q Consensus 731 ~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~ 810 (1034)
|.+++++.+...++.+++|++|.++|+....++|.+++... |+++..++|+..++......++++|+||++|+...|+|
T Consensus 960 ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw 1038 (1230)
T KOG0952|consen 960 AELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSW 1038 (1230)
T ss_pred HHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCccccc
Confidence 99999999999999999999999999999999999888775 99999999999999888889999999999999999999
Q ss_pred ccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCc
Q psy13788 811 QNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVR 890 (1034)
Q Consensus 811 ~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r 890 (1034)
..+..+++++++|+||.|++++++||.++.+.++..+++.+.+..+|++++|..+.|+.++++|++..+. ++|.|..|
T Consensus 1039 ~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~svr 1116 (1230)
T KOG0952|consen 1039 QTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRPSVR 1116 (1230)
T ss_pred cchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCcccc
Confidence 9999999999999999999999999999999999999888999999999999999999999999999887 99999999
Q ss_pred ccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHH
Q psy13788 891 PVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDN 970 (1034)
Q Consensus 891 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 970 (1034)
|+|+++++.+|++.++++++.+|+++.+++++.+++.+|++||+.++++.+..|..|+..+..+.+|..|++.+..+++.
T Consensus 1117 pvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~de~e~e~ 1196 (1230)
T KOG0952|consen 1117 PVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMDELELEI 1196 (1230)
T ss_pred cCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHh
Q psy13788 971 IVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSAL 1003 (1034)
Q Consensus 971 ~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~i 1003 (1034)
+...++|.+|+.++++|++.||+|+...||..+
T Consensus 1197 ~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1197 IMSKVRDTNLKLTLPFGIGLHHAGLIENDRKIV 1229 (1230)
T ss_pred HHHHhcccchhhhhhhhhhhhhhhccccccccC
Confidence 999999999999999999999999999998765
No 2
>KOG0951|consensus
Probab=100.00 E-value=1.2e-141 Score=1225.57 Aligned_cols=930 Identities=39% Similarity=0.696 Sum_probs=844.6
Q ss_pred cccccccEEEEeeeecccCCCCchHHHHHHhhhhccc----cceeecccchhh----hhh---------HHHhhccccC-
Q psy13788 3 ALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIG----QEVFKGVKSLNR----IQS---------LVYDTAYHTN- 64 (1034)
Q Consensus 3 ~~~~~v~~vViDEvH~l~d~RG~~le~li~~~~~~~~----~~~~~~~~~~~~----~~~---------~~~~~~~~~~- 64 (1034)
++.+.+.++|||||||++|+|||++|.+++|+.+... +.+++|+|++.+ +.. +.++.+|||.
T Consensus 433 aY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvP 512 (1674)
T KOG0951|consen 433 AYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVP 512 (1674)
T ss_pred hHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCC
Confidence 5677899999999999999999999999999988763 356777766433 222 1345566641
Q ss_pred ----------------------------------Cc--eEEeccCCcchhHHHHHHHHHH---HHHHhhccc---c----
Q psy13788 65 ----------------------------------EN--LLICAPTGAGKTNVAMLTIAHQ---IKQHISQGT---E---- 98 (1034)
Q Consensus 65 ----------------------------------~~--~~v~~~~~~~k~~~~~~~~~~~---~~~~~~~~~---~---- 98 (1034)
.+ +||++|+++.|++.+|.+.+-+ +..+..++. +
T Consensus 513 L~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrt 592 (1674)
T KOG0951|consen 513 LKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRT 592 (1674)
T ss_pred ccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhh
Confidence 12 7788999999999888765433 222222221 0
Q ss_pred ----cee------ccccc-eecchhH-----HHHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeec
Q psy13788 99 ----MYN------AKHGC-YVHIGIL-----DVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYN 161 (1034)
Q Consensus 99 ----~~~------~~~g~-~~h~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~ 161 (1034)
..+ ...|+ -|||||. .++++|..+ .+.+.+.|-|++ +|||+|| +||||||++||
T Consensus 593 ea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g--------~iqvlvstatla-wgvnlpahtViikgtqvy~ 663 (1674)
T KOG0951|consen 593 EAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADG--------HIQVLVSTATLA-WGVNLPAHTVIIKGTQVYD 663 (1674)
T ss_pred hhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcC--------ceeEEEeehhhh-hhcCCCcceEEecCccccC
Confidence 001 13777 6688987 344555443 556666777777 6999998 99999999999
Q ss_pred CCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHhcCCcceecccccchHHHHhhhhhcccccchhh
Q psy13788 162 AKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAEVALGTIGNIDE 241 (1034)
Q Consensus 162 ~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~~~~~i~s~l~~~~~~~ln~e~~~~~~~~~~~ 241 (1034)
|++|+|+++++.|++||.|||||||||+.|+++|+|..++..+|.++++++.||||+|.++|.|.|||||
T Consensus 664 pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaei---------- 733 (1674)
T KOG0951|consen 664 PEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEI---------- 733 (1674)
T ss_pred cccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhh----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHHHHHHHHHH
Q psy13788 242 AVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQ 321 (1034)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~ 321 (1034)
++| +.+.+|+++|+.+||+|+||.+||..||+.++.. |..++....+++++|+.
T Consensus 734 -----------------------v~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~--d~~le~~r~~lvhsa~~ 787 (1674)
T KOG0951|consen 734 -----------------------VLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEAS--DRLLEQRRADLVHSAAT 787 (1674)
T ss_pred -----------------------hcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccc--hHHHHHHHhhhHHHHHh
Confidence 999 9999999999999999999999999999998764 77888888899999999
Q ss_pred HhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhhhHHHHHHhh
Q psy13788 322 ILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQ 401 (1034)
Q Consensus 322 ~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l~~ 401 (1034)
.|+++|+|.+|..+|.+++|++|+++|.|||.+.+|..+++.|+..+++.++.++++.+.||+.+.+|.+|+.++..+..
T Consensus 788 ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek~el~~l~~ 867 (1674)
T KOG0951|consen 788 LLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEKMELAKLLE 867 (1674)
T ss_pred hHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hccccCCCCCCCCcchhHHHHHHHHHhCCCCCCcChHhhHHHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Q psy13788 402 ECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETK 481 (1034)
Q Consensus 402 ~~~~~~~~~~~~~~~~Kv~~LLqa~i~~~~~~~~~l~gd~~~i~~~a~rll~al~ei~~~~~~~~~~~~~l~L~k~l~~~ 481 (1034)
. .|+|+++..+++..|+|+|||+|++++.+..++|..|+.++-|+|+|++||+++|+..+||+..+..++.+|+|++.+
T Consensus 868 ~-vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~~l~~ck~v~~r 946 (1674)
T KOG0951|consen 868 R-VPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQMALNLCKMVEKR 946 (1674)
T ss_pred c-CCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHHHHHhHhHhhhh
Confidence 6 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccccccccCCCCCCCCHHHHHHHHhcCCCHHHHhcCCHHHHHhhhcCchhHHHHHHHhhcCCcceEEEEEE
Q psy13788 482 QWPHETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLL 561 (1034)
Q Consensus 482 ~w~~~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~t~~~l~~~~~~el~~~l~~~~~g~~i~~~~~~~P~l~~~~~~~ 561 (1034)
+|+.++||+|+ ++++.+++++|+++.+.|..+.++++.|++.+++.|++|..++.++++||++.+.+.+|
T Consensus 947 ~w~~~~plrqf----------~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~vq 1016 (1674)
T KOG0951|consen 947 MWPTQTPLRQF----------KGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAHVQ 1016 (1674)
T ss_pred cccccCchhhc----------CCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeeeee
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccceEEEEEEEEeCCCCCccCCCCCCCcEEEEEEcCCCCeeEEEeeEEeecccccccCceeEEEEeecCCCCCCceEE
Q psy13788 562 PITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLI 641 (1034)
Q Consensus 562 pit~~~l~v~l~~~~~~~~~~~~~~~~~e~~~l~v~D~~~~~i~~~~~~~l~~~~~~~~~~~~l~f~vpl~~p~p~~~~i 641 (1034)
|||+..+++.+.++|+|.||.++||. .|+||++|+|.++.+|+|++.|.++|+ ++.+.|++|+.+| ||+|++
T Consensus 1017 pitr~~~~~~l~i~~~f~wd~~vh~~-~e~F~i~ved~dge~il~~e~~~~~k~------~~~v~ft~~~~~~-pP~~fi 1088 (1674)
T KOG0951|consen 1017 PITRSVYRVELTITPDFDWDDKVHGS-VEPFWIIVEDTDGEKILHHEFFLLKKK------EHTVNFTVPLFEP-PPQYFI 1088 (1674)
T ss_pred eeeeeEEEEEEEEeecccchhhhccc-ccceEEEEEccCccceeeeeeEEeccC------ceEEEEEeecCCC-CCceEE
Confidence 99999999999999999999999998 999999999999999999999998875 6899999999999 999999
Q ss_pred EeeccccccccccccccccccccCCCCCCCCccccCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEc
Q psy13788 642 RAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGA 721 (1034)
Q Consensus 642 ~~~Sd~wlg~e~~~~vs~~~l~~p~~~~~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~a 721 (1034)
+++||+|+++++..|++|.++++|++.||+|+++|++|+++.++.++.|..+|.. ++|+|+|+|+.++++++++++++
T Consensus 1089 ~lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~--~n~iqtqVf~~~y~~nd~v~vga 1166 (1674)
T KOG0951|consen 1089 RLVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQD--FNPIQTQVFTSLYNTNDNVLVGA 1166 (1674)
T ss_pred EEeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhccc--cCCceEEEEeeeecccceEEEec
Confidence 9999999999999999999999999999999999999999999999999988653 49999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcEEEECHh
Q psy13788 722 PTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPE 801 (1034)
Q Consensus 722 pTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe 801 (1034)
|+|||||.|+.+++++ ..+..+++|++|..+.+..+++.|.++|+...|..+..++|+.+.+.+..+..+|+|+||+
T Consensus 1167 ~~gsgkt~~ae~a~l~---~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe 1243 (1674)
T KOG0951|consen 1167 PNGSGKTACAELALLR---PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIISTPE 1243 (1674)
T ss_pred CCCCchhHHHHHHhcC---CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEEechh
Confidence 9999999999999987 4567899999999999999999999999999999999999999999888899999999999
Q ss_pred hHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCc
Q psy13788 802 KWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQG 881 (1034)
Q Consensus 802 ~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~ 881 (1034)
+|+.+ + ..+.+++.|.||+|++++..|+.++.+++ +++++++..+++|++++|..+.|++++ +|....+
T Consensus 1244 ~~d~l-q------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~s~~~ 1312 (1674)
T KOG0951|consen 1244 QWDLL-Q------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGASSSG 1312 (1674)
T ss_pred HHHHH-h------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---ccccccc
Confidence 99876 1 57889999999999999989999999999 999999999999999999999999988 8999999
Q ss_pred eeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhC-CCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcc
Q psy13788 882 MYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHS-PEKPVMIFVSSRRQTRLTAIDLITILACETNPKMW 960 (1034)
Q Consensus 882 ~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~ 960 (1034)
+|||.|+.||+|++++++++...++..++.+|.++.|.++..+. .+++++||++++++|+.+|..+..+...+. ..+
T Consensus 1313 v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~--~~~ 1390 (1674)
T KOG0951|consen 1313 VFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADE--PDY 1390 (1674)
T ss_pred eeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCc--HHH
Confidence 99999999999999999999999999999999999999998774 668999999999999999999988765541 111
Q ss_pred cCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhcc
Q psy13788 961 VHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGN 1029 (1034)
Q Consensus 961 ~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv 1029 (1034)
+ -...+. .|..|+..++.||+ |.|++..+...+.. + |..|.|+|+|...- .+|+
T Consensus 1391 l-------~~~~e~-~~~~l~e~l~~gvg--~e~~s~~d~~iv~~--l--~e~g~i~v~v~s~~-~~~~ 1444 (1674)
T KOG0951|consen 1391 L-------LSELEE-CDETLRESLKHGVG--HEGLSSNDQEIVQQ--L--FEAGAIQVCVMSRD-CYGT 1444 (1674)
T ss_pred H-------HHHHhc-chHhhhhccccccc--ccccCcchHHHHHH--H--HhcCcEEEEEEEcc-cccc
Confidence 1 111111 57789999999999 99999999999999 9 99999999998776 7775
No 3
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.2e-59 Score=574.07 Aligned_cols=477 Identities=15% Similarity=0.220 Sum_probs=371.4
Q ss_pred cccccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh----hhhH----HHhhccc-----------
Q psy13788 3 ALTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR----IQSL----VYDTAYH----------- 62 (1034)
Q Consensus 3 ~~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~----------- 62 (1034)
.|+++|++|||||+|+++| +||+++|.+++++++...+.|++|+|++.. +... .+...+|
T Consensus 133 ~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~ 212 (737)
T PRK02362 133 PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYG 212 (737)
T ss_pred hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecC
Confidence 5788999999999999999 999999999999877677889999987521 1110 0000111
Q ss_pred -----------------------------cCCceEEeccCC--cchhHHHHHHHHH------------HHHHHhhccc--
Q psy13788 63 -----------------------------TNENLLICAPTG--AGKTNVAMLTIAH------------QIKQHISQGT-- 97 (1034)
Q Consensus 63 -----------------------------~~~~~~v~~~~~--~~k~~~~~~~~~~------------~~~~~~~~~~-- 97 (1034)
++.+++||+++. +...+..+..... .+.+.+....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (737)
T PRK02362 213 GAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDT 292 (737)
T ss_pred CeeccccccccCCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCc
Confidence 234577777552 2222221111100 0011111000
Q ss_pred ----cce-eccccc-eecchhHH-HHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeee
Q psy13788 98 ----EMY-NAKHGC-YVHIGILD-VLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVH 169 (1034)
Q Consensus 98 ----~~~-~~~~g~-~~h~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~ 169 (1034)
.+. ....|+ |||+|+.. ..+..+++++. ..+...++|.+++ +|||+|+ +|||+||++||+.. ++.+
T Consensus 293 ~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~----G~i~VLvaT~tla-~GvnlPa~~VVI~~~~~yd~~~-g~~~ 366 (737)
T PRK02362 293 ETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD----RLIKVISSTPTLA-AGLNLPARRVIIRDYRRYDGGA-GMQP 366 (737)
T ss_pred cccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc----CCCeEEEechhhh-hhcCCCceEEEEecceeecCCC-Ccee
Confidence 000 013678 88999872 22333333322 2556666677777 4899998 89999999999877 4689
Q ss_pred cChhhHHHHhhccCCCCccccceEEEECCcc--cHHHHHHHh-cCCcceecccc--cchHHHHhhhhhcccccchhhHHH
Q psy13788 170 IGILDVLQIFGRAGRPQYNTSGHATIITPHE--KLNHYLSLL-TNQIPIESNFV--ANLADNLNAEVALGTIGNIDEAVR 244 (1034)
Q Consensus 170 ~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~--~~~~y~~~~-~~~~~i~s~l~--~~~~~~ln~e~~~~~~~~~~~~~~ 244 (1034)
+++.+|+||+|||||||+|+.|+++++|.+. ..+.|.+.+ ++++|++|+|. ..+.+++|+||
T Consensus 367 ~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I------------- 433 (737)
T PRK02362 367 IPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTI------------- 433 (737)
T ss_pred CCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHH-------------
Confidence 9999999999999999999999999999874 334466666 68999999995 46889999999
Q ss_pred HHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHhh
Q psy13788 245 WLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILD 324 (1034)
Q Consensus 245 ~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 324 (1034)
++|++.+.+|+++|+++||+|.+.. ..+++.+++++++++|.
T Consensus 434 --------------------~~~~~~~~~d~~~~l~~Tf~~~~~~------------------~~~~l~~~v~~~l~~L~ 475 (737)
T PRK02362 434 --------------------ASGFARTRDGLLEFLEATFYATQTD------------------DTGRLERVVDDVLDFLE 475 (737)
T ss_pred --------------------HhCccCCHHHHHHHHHhChHHhhcc------------------chHHHHHHHHHHHHHHH
Confidence 9999999999999999999998321 12578899999999999
Q ss_pred hcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCCC--CHHHHHHhhccccccccCcCChhhhHHHHHHhhh
Q psy13788 325 KAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVL--DDVGILSMISQAHEFEQLKVRDEELHELDNLTQE 402 (1034)
Q Consensus 325 ~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~--~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l~~~ 402 (1034)
++|||+.+ ++.+.+|++|+++|+|||+|.|+..|.+.|+... +..++|+++|.++||+.+++|++|...+..+...
T Consensus 476 ~~~~i~~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~ 553 (737)
T PRK02362 476 RNGMIEED--GETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYE 553 (737)
T ss_pred HCCCeeec--CCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhHHHHHHHHHHh
Confidence 99999986 6779999999999999999999999999998764 7899999999999999999999999888876522
Q ss_pred c-------cccCCCCC-CCC--cchhHHHHHHHHHhCCCCC----CcCh-HhhHHHHHHhHHHHHHHHHHHHHhcccHHH
Q psy13788 403 C-------CEIPIRGG-SEN--VHGKVNILLQTLLSRGRVN----SFSL-VSDLEYVNQNVIRIIRALFEITLHRNNAIM 467 (1034)
Q Consensus 403 ~-------~~~~~~~~-~~~--~~~Kv~~LLqa~i~~~~~~----~~~l-~gd~~~i~~~a~rll~al~ei~~~~~~~~~ 467 (1034)
. .|.+.... .+. +..|+++|||+|+++.+++ .|++ .||++.+++++.|++.|+.+||...+ ...
T Consensus 554 ~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~~~-~~~ 632 (737)
T PRK02362 554 HEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWLLHAAERLASELD-LDL 632 (737)
T ss_pred cccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhC-ccH
Confidence 1 12211111 112 6789999999999999965 6778 49999999999999999999998865 457
Q ss_pred HHHHHHHHHHHHhccCCCCCcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCchhHHHHHH
Q psy13788 468 AARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVGDKVKQ 546 (1034)
Q Consensus 468 ~~~~l~L~k~l~~~~w~~~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~~~g~~i~~ 546 (1034)
+..+.+|++||.+|+|++.+||+|+ ||+++.++++|+++|+ |++||+.+++.+|..++ .++.+++|++
T Consensus 633 ~~~~~~l~~~l~~gv~~~~~~L~~i----------p~i~~~~a~~l~~~gi~s~~dl~~~~~~~l~~~~-g~~~~~~i~~ 701 (737)
T PRK02362 633 ARAARELEKRVEYGVREELLDLVGL----------RGVGRVRARRLYNAGIESRADLRAADKSVVLAIL-GEKIAENILE 701 (737)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhCC----------CCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHH-CHHHHHHHHH
Confidence 8899999999999999999999999 9999999999999999 99999999999999984 4567888888
Q ss_pred Hhhc
Q psy13788 547 CAWE 550 (1034)
Q Consensus 547 ~~~~ 550 (1034)
.++.
T Consensus 702 ~~~~ 705 (737)
T PRK02362 702 QAGR 705 (737)
T ss_pred HhCc
Confidence 8763
No 4
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.9e-55 Score=537.49 Aligned_cols=475 Identities=17% Similarity=0.253 Sum_probs=354.6
Q ss_pred cccccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh----hhhH----HHhhccc-----------
Q psy13788 3 ALTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR----IQSL----VYDTAYH----------- 62 (1034)
Q Consensus 3 ~~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~----------- 62 (1034)
.|+++|++|||||+|+++| +||+++|.+++++. ..+|++|+|++.. +... .+...++
T Consensus 134 ~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~---~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~~~~~ 210 (720)
T PRK00254 134 SWIKDVKLVVADEIHLIGSYDRGATLEMILTHML---GRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQ 210 (720)
T ss_pred hhhhcCCEEEEcCcCccCCccchHHHHHHHHhcC---cCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCcceeeEecC
Confidence 4788999999999999999 99999999999853 3568998887521 1110 0001111
Q ss_pred --------------------------cCCceEEeccCC--cchhHHHHHHHHH------------HHHHHhhccc---cc
Q psy13788 63 --------------------------TNENLLICAPTG--AGKTNVAMLTIAH------------QIKQHISQGT---EM 99 (1034)
Q Consensus 63 --------------------------~~~~~~v~~~~~--~~k~~~~~~~~~~------------~~~~~~~~~~---~~ 99 (1034)
.+.+++||+++. +...+..+..... +..+.+.... .+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 290 (720)
T PRK00254 211 GFLFWEDGKIERFPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKL 290 (720)
T ss_pred CeeeccCcchhcchHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHH
Confidence 134566766542 2222222211100 0111110000 00
Q ss_pred -eeccccc-eecchhHH-HHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhH
Q psy13788 100 -YNAKHGC-YVHIGILD-VLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDV 175 (1034)
Q Consensus 100 -~~~~~g~-~~h~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~ 175 (1034)
.....|+ |||+|+.. ..+..++.++. +.+...++|.+++ +|||+|| +|||+++++|+. . ++.++++.+|
T Consensus 291 ~~~l~~gv~~hHagl~~~eR~~ve~~F~~----G~i~VLvaT~tLa-~Gvnipa~~vVI~~~~~~~~-~-~~~~~~~~~~ 363 (720)
T PRK00254 291 KKALRGGVAFHHAGLGRTERVLIEDAFRE----GLIKVITATPTLS-AGINLPAFRVIIRDTKRYSN-F-GWEDIPVLEI 363 (720)
T ss_pred HHHHhhCEEEeCCCCCHHHHHHHHHHHHC----CCCeEEEeCcHHh-hhcCCCceEEEECCceEcCC-C-CceeCCHHHH
Confidence 0123578 88898872 22322333222 2456666666666 4899998 899999999973 2 4789999999
Q ss_pred HHHhhccCCCCccccceEEEECCcccH-HHHHHHh-cCCcceeccccc--chHHHHhhhhhcccccchhhHHHHHHHHHH
Q psy13788 176 LQIFGRAGRPQYNTSGHATIITPHEKL-NHYLSLL-TNQIPIESNFVA--NLADNLNAEVALGTIGNIDEAVRWLIIYIN 251 (1034)
Q Consensus 176 ~Qm~GRAGR~~~d~~G~~~i~~~~~~~-~~y~~~~-~~~~~i~s~l~~--~~~~~ln~e~~~~~~~~~~~~~~~~~~~~~ 251 (1034)
+||+|||||||+|+.|+++++|..++. +.|..++ +.++++.|.+.. .+.+++|+||
T Consensus 364 ~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i-------------------- 423 (720)
T PRK00254 364 QQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALI-------------------- 423 (720)
T ss_pred HHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHH--------------------
Confidence 999999999999999999999987552 3343333 556667777643 4556666666
Q ss_pred HHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHhhhcCceEE
Q psy13788 252 FVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRF 331 (1034)
Q Consensus 252 ~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~ 331 (1034)
+.|++.+.+|+++|+++||+|. +||.+|++ .+.+++++..|.+++||+.
T Consensus 424 -------------~~~~~~~~~~~~~~l~~Tf~~~---~~~~~~~~---------------~~~v~~~l~~L~~~~~i~~ 472 (720)
T PRK00254 424 -------------TNFGVSNFKELVNFLERTFYAH---QRKDLYSL---------------EEKAKEIVYFLLENEFIDI 472 (720)
T ss_pred -------------HhCCCCCHHHHHHHHHhCHHHH---hhcChHhH---------------HHHHHHHHHHHHHCCCeEE
Confidence 9999999999999999999995 46665543 3578889999999999998
Q ss_pred ecCCCCcccChHHHHHHhhccChHhHHHHHHhcCC---CCCHHHHHHhhccccccccCcCChhhhHHHHHHhhhc-----
Q psy13788 332 NMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTK---VLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQEC----- 403 (1034)
Q Consensus 332 ~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~---~~~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l~~~~----- 403 (1034)
+. ++.+.+|++|+++|+|||+|+|+..|.+.|+. .++..++|+++|.++||..+++|++|...+.+.....
T Consensus 473 ~~-~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~ 551 (720)
T PRK00254 473 DL-EDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLY 551 (720)
T ss_pred cC-CCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhccccc
Confidence 74 57899999999999999999999999999876 5788999999999999999999999988777443221
Q ss_pred cccCCCC--CCCC--cchhHHHHHHHHHhCCCCC----CcChH-hhHHHHHHhHHHHHHHHHHHHHhccc-HHHHHHHHH
Q psy13788 404 CEIPIRG--GSEN--VHGKVNILLQTLLSRGRVN----SFSLV-SDLEYVNQNVIRIIRALFEITLHRNN-AIMAARFLK 473 (1034)
Q Consensus 404 ~~~~~~~--~~~~--~~~Kv~~LLqa~i~~~~~~----~~~l~-gd~~~i~~~a~rll~al~ei~~~~~~-~~~~~~~l~ 473 (1034)
.+.+.+. .... ++.|+++|||+|++|.+++ .|++. ||++.+++++.|++.|+.+|+..+|+ ......+.+
T Consensus 552 ~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~ 631 (720)
T PRK00254 552 FNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLDYLET 631 (720)
T ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 1122211 1112 6789999999999999975 46665 99999999999999999999998886 344455668
Q ss_pred HHHHHHhccCCCCCcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhh
Q psy13788 474 FALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAW 549 (1034)
Q Consensus 474 L~k~l~~~~w~~~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~ 549 (1034)
|++||.||+|++++||.|+ ||+++.++++|.++|+ |++++.++++++|..+.. +++.++.|++.++
T Consensus 632 l~~rl~~g~~~~~~~L~~i----------pgig~~~~~~l~~~g~~s~~~i~~a~~~el~~~~gi~~~~a~~i~~~~~ 699 (720)
T PRK00254 632 LHLRVKHGVREELLELMRL----------PMIGRKRARALYNAGFRSIEDIVNAKPSELLKVEGIGAKIVEGIFKHLG 699 (720)
T ss_pred HHHHHHcCCCHHHhhhhcC----------CCCCHHHHHHHHHccCCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHhc
Confidence 9999999999999999999 9999999999999999 999999999999998843 4677888888766
No 5
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.5e-54 Score=528.17 Aligned_cols=465 Identities=15% Similarity=0.237 Sum_probs=362.5
Q ss_pred cccccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh----hhhH----HHhhccc-----------
Q psy13788 3 ALTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR----IQSL----VYDTAYH----------- 62 (1034)
Q Consensus 3 ~~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~----------- 62 (1034)
.+++++++|||||+|+++| +||+++|.++.++.......|++++|++.. +... .+...++
T Consensus 131 ~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl~~~i~~~ 210 (674)
T PRK01172 131 YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLNASLIKSNFRPVPLKLGILYR 210 (674)
T ss_pred hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCeEEEEEec
Confidence 3578999999999999999 999999999998665556788999887531 1110 0111111
Q ss_pred ------------------------cCCceEEeccCCcchhHHHHHHHHHHHHHHhhcccc--------------c-eecc
Q psy13788 63 ------------------------TNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTE--------------M-YNAK 103 (1034)
Q Consensus 63 ------------------------~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~ 103 (1034)
++++++||+++. ..+...+..+.+....... + .-..
T Consensus 211 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr-----~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 285 (674)
T PRK01172 211 KRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSR-----KNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLP 285 (674)
T ss_pred CeeeecccccccccHHHHHHHHHhCCCcEEEEeccH-----HHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHh
Confidence 234567776652 1111222222222111000 0 0013
Q ss_pred ccc-eecchhHH-HHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhh
Q psy13788 104 HGC-YVHIGILD-VLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFG 180 (1034)
Q Consensus 104 ~g~-~~h~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~G 180 (1034)
+|+ +||+|+.. ..+..++.++. ..+...++|.+++ +|||+|+ +|||.++.+|++. +..++++.+|+||+|
T Consensus 286 ~gv~~~hagl~~~eR~~ve~~f~~----g~i~VLvaT~~la-~Gvnipa~~VII~~~~~~~~~--~~~~~s~~~~~Qm~G 358 (674)
T PRK01172 286 HGVAFHHAGLSNEQRRFIEEMFRN----RYIKVIVATPTLA-AGVNLPARLVIVRDITRYGNG--GIRYLSNMEIKQMIG 358 (674)
T ss_pred cCEEEecCCCCHHHHHHHHHHHHc----CCCeEEEecchhh-ccCCCcceEEEEcCceEeCCC--CceeCCHHHHHHHhh
Confidence 678 78888873 22222332222 2456666666666 4899998 8999999999854 347899999999999
Q ss_pred ccCCCCccccceEEEECCccc-HHHHHHHh-cCCcceecccccchHHHHh--hhhhcccccchhhHHHHHHHHHHHHHHH
Q psy13788 181 RAGRPQYNTSGHATIITPHEK-LNHYLSLL-TNQIPIESNFVANLADNLN--AEVALGTIGNIDEAVRWLIIYINFVANL 256 (1034)
Q Consensus 181 RAGR~~~d~~G~~~i~~~~~~-~~~y~~~~-~~~~~i~s~l~~~~~~~ln--~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1034)
||||+|+|+.|+++++|...+ .+.|.+++ ++++||+|+|.....++.| +||
T Consensus 359 RAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i------------------------- 413 (674)
T PRK01172 359 RAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAI------------------------- 413 (674)
T ss_pred cCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHH-------------------------
Confidence 999999999999999998754 56777777 8899999999876666655 777
Q ss_pred hhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHhhhcCceEEecCCC
Q psy13788 257 ADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMRTR 336 (1034)
Q Consensus 257 ~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~ 336 (1034)
+.|.+.+.+|+++|+++||+|.+ |+ + +++.+.+++++++|.++|||+. ++
T Consensus 414 --------~~g~~~~~~d~~~~l~~tf~~~~---~~-------------~---~~l~~~v~~~l~~L~~~~~i~~---~~ 463 (674)
T PRK01172 414 --------SMGLASSMEDLILFYNETLMAIQ---NG-------------V---DEIDYYIESSLKFLKENGFIKG---DV 463 (674)
T ss_pred --------HhcccCCHHHHHHHHHhhhhHhc---Cc-------------h---HHHHHHHHHHHHHHHHCCCccc---CC
Confidence 99999999999999999999982 11 1 4677899999999999999974 35
Q ss_pred CcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhhhHHHHHHhhhccccCCCCCCCCcc
Q psy13788 337 DLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVH 416 (1034)
Q Consensus 337 ~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l~~~~~~~~~~~~~~~~~ 416 (1034)
.+.+|++|+++|+|||+|+|+..|.+.++..++..++|+++|.++|| +++|..|...+.++... .+. .....++
T Consensus 464 ~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~~e~--~~~~~~~~~~~~~~~~~-~~~---~~~~~~~ 537 (674)
T PRK01172 464 TLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLCREI--IPANTRDDYYAMEFLED-IGV---IDGDISA 537 (674)
T ss_pred cEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcCccc--cccccchHHHHHHHHHH-hcc---ccchhHH
Confidence 69999999999999999999999999999999999999999999999 77777777666666543 111 1223468
Q ss_pred hhHHHHHHHHHhCCCCC----CcChH-hhHHHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccCCCCCcccc
Q psy13788 417 GKVNILLQTLLSRGRVN----SFSLV-SDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491 (1034)
Q Consensus 417 ~Kv~~LLqa~i~~~~~~----~~~l~-gd~~~i~~~a~rll~al~ei~~~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~q 491 (1034)
.|+++|||+|++|.+++ .|.+. ||++.+++++.|+..|+.++|... +......+..|.+||.||+|++++||+|
T Consensus 538 ~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~l~~~~~rl~~gv~~~~~~L~~ 616 (674)
T PRK01172 538 AKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWISYSLARLSSIY-KPEMRRKLEILNIRIKEGIREDLIDLVL 616 (674)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHcCCCHHHHhhcC
Confidence 99999999999999975 56666 999999999999999999999875 4667888889999999999999999999
Q ss_pred cccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhcC
Q psy13788 492 IKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWEI 551 (1034)
Q Consensus 492 l~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~~ 551 (1034)
+ ||+++.++++|+++|+ |+.|+++++++++.+++. +++.++.|++.++++
T Consensus 617 i----------p~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 668 (674)
T PRK01172 617 I----------PKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDTLANAIVNRAMKI 668 (674)
T ss_pred C----------CCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 9 9999999999999999 999999999999999876 678888888888765
No 6
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.1e-51 Score=495.04 Aligned_cols=515 Identities=23% Similarity=0.313 Sum_probs=380.5
Q ss_pred ccccccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh----hhhHH----Hhhccc----------
Q psy13788 2 VALTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR----IQSLV----YDTAYH---------- 62 (1034)
Q Consensus 2 ~~~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~---------- 62 (1034)
..|+.+|++|||||||+|+| .|||++|.+++|+++..+..+|+|+|++.+ ++... +...++
T Consensus 141 ~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~ 220 (766)
T COG1204 141 PSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPY 220 (766)
T ss_pred cchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCcc
Confidence 35899999999999999999 699999999999988888899999887332 11110 011111
Q ss_pred -------------------------------cCCc--eEEeccCCcchhHHHHHHHHHH-----HHHHhhcc-ccce---
Q psy13788 63 -------------------------------TNEN--LLICAPTGAGKTNVAMLTIAHQ-----IKQHISQG-TEMY--- 100 (1034)
Q Consensus 63 -------------------------------~~~~--~~v~~~~~~~k~~~~~~~~~~~-----~~~~~~~~-~~~~--- 100 (1034)
.+++ +|+++|+.+.+++..+...... .......+ ....
T Consensus 221 ~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~ 300 (766)
T COG1204 221 VGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPE 300 (766)
T ss_pred ceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhcccccccccccc
Confidence 2345 4455577666666555432111 00000000 0001
Q ss_pred -----------eccccc-eecchhH-HHHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCe
Q psy13788 101 -----------NAKHGC-YVHIGIL-DVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGC 166 (1034)
Q Consensus 101 -----------~~~~g~-~~h~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~ 166 (1034)
-...|+ |||||+. +..+..+.+++.+ .++..++|.||+ +|||+|| +|||+||++||+ .+|
T Consensus 301 ~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g----~ikVlv~TpTLA-~GVNLPA~~VIIk~~~~y~~-~~g 374 (766)
T COG1204 301 TPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKG----KIKVLVSTPTLA-AGVNLPARTVIIKDTRRYDP-KGG 374 (766)
T ss_pred ccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcC----CceEEEechHHh-hhcCCcceEEEEeeeEEEcC-CCC
Confidence 114788 9999998 3334444444332 666677777777 5999999 899999999999 445
Q ss_pred eeecChhhHHHHhhccCCCCccccceEEEECCc-ccHHHHHHHhcCC--cceecccccchHHHHhhhhhcccccchhhHH
Q psy13788 167 YVHIGILDVLQIFGRAGRPQYNTSGHATIITPH-EKLNHYLSLLTNQ--IPIESNFVANLADNLNAEVALGTIGNIDEAV 243 (1034)
Q Consensus 167 ~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~-~~~~~y~~~~~~~--~~i~s~l~~~~~~~ln~e~~~~~~~~~~~~~ 243 (1034)
|+++++.||+||+|||||||||+.|+++|+++. ++.+.+......+ +|++|++. +..|++.
T Consensus 375 ~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~----~~~~~~~------------ 438 (766)
T COG1204 375 IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLG----DELNLRT------------ 438 (766)
T ss_pred eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhc----ccccchh------------
Confidence 999999999999999999999999999999955 4444444444333 44444444 4458888
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHh
Q psy13788 244 RWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQIL 323 (1034)
Q Consensus 244 ~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L 323 (1034)
.++++.+..++++|+..|++|.|+..||..|+.. ..+..+..+++.|
T Consensus 439 ---------------------~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~------------~~~~~i~~~~~~L 485 (766)
T COG1204 439 ---------------------FLLGVISVGDAVSWLELTDFYERTFYNPQTYGEG------------MLREEILASLRYL 485 (766)
T ss_pred ---------------------eEEEEEeccchhhHHHHHHHHHHHHhhhhhcccc------------chHHHHHHHHHHH
Confidence 8888899999999999999999999999999762 2346788999999
Q ss_pred hhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCCC---CHHHHHHhhccccccccCcCChhhhHHH-HHH
Q psy13788 324 DKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVL---DDVGILSMISQAHEFEQLKVRDEELHEL-DNL 399 (1034)
Q Consensus 324 ~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~---~~~~lL~ll~~s~EF~~i~~r~~E~~~l-~~l 399 (1034)
.+++++.. .....+.+|++|+.+|++||+|+|+..|.+.+.... ++.++++.++.++||..++.+..+..++ ...
T Consensus 486 ~~~~~~~~-~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~~~~~~~~~~ 564 (766)
T COG1204 486 EENGLILD-ADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLDE 564 (766)
T ss_pred Hhccceee-ccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhhhhhhhhhHHH
Confidence 99983332 237889999999999999999999999999988764 8899999999999999999999888875 333
Q ss_pred hhhccccCCCCCCC---------CcchhHHHHHHHHHhCCCCC----CcChH-hhHHHHHHhHHHH-------HHHHHHH
Q psy13788 400 TQECCEIPIRGGSE---------NVHGKVNILLQTLLSRGRVN----SFSLV-SDLEYVNQNVIRI-------IRALFEI 458 (1034)
Q Consensus 400 ~~~~~~~~~~~~~~---------~~~~Kv~~LLqa~i~~~~~~----~~~l~-gd~~~i~~~a~rl-------l~al~ei 458 (1034)
.....+........ ....|....+.+|+++.+.. .|++. +|+..+..++.|+ ..++.+.
T Consensus 565 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w~~~~~~~l~~~~~r~ 644 (766)
T COG1204 565 LEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEWLSADLLALGKAAERL 644 (766)
T ss_pred HHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhhhhhhhhhhhhhhhhh
Confidence 32222222211111 23456777888999998874 56666 9999999999999 8888888
Q ss_pred HHhcccHHHH-HHHHHHHHHHHhccC-CCCCcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHh-cCCHHHHHhh
Q psy13788 459 TLHRNNAIMA-ARFLKFALMFETKQW-PHETPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLR-EMPAKEISYM 534 (1034)
Q Consensus 459 ~~~~~~~~~~-~~~l~L~k~l~~~~w-~~~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~-~~~~~el~~~ 534 (1034)
+...+..... ...-.+..++++|+. ++..+|..+ +++++.++++++++|+ ++++++ ...+.++...
T Consensus 645 ~~~~~~~~~~~~~~~~~~~rie~gv~~e~~~~l~~i----------~~~grvrar~ly~~g~~~~~~~~~~~~~~~~~~~ 714 (766)
T COG1204 645 AKILGLGLHVLRKLEILSLRIEYGVRSEELLELVEI----------RGVGRVRARKLYNAGYKSLEDLRLIADPAELLPL 714 (766)
T ss_pred HhhhCCCccccccchhhhhhhhcCCChhhhcccccc----------cccchhHHHHHHHhhhccHHHHHhhcChhhhhhh
Confidence 8887764322 566779999999999 778899999 9999999999999999 999999 6677776554
Q ss_pred hcCchhHHHHHHHhhcCCcceEEEEEEeeccceEEEEEEEEeCCCCCccCCCCCCCcEEEEEEcCCCCeeEEEeeEEe
Q psy13788 535 LRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLL 612 (1034)
Q Consensus 535 l~~~~~g~~i~~~~~~~P~l~~~~~~~pit~~~l~v~l~~~~~~~~~~~~~~~~~e~~~l~v~D~~~~~i~~~~~~~l 612 (1034)
...+..+...+ .+.+.|....|+. .+.||..+.+.....+.|.+.+.+
T Consensus 715 ---~~~~~~~~~~i--------------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 762 (766)
T COG1204 715 ---TGIGERLVEAI--------------------------LESLGRDVLLSGR-AYFFSIEVRELDLLYVLHEEALIL 762 (766)
T ss_pred ---hhhHHHHHHHH--------------------------HHHhhhhhhcccc-hhhhcccCccccccceecchhhcc
Confidence 33444444432 3345666666766 788889899988888887765544
No 7
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=4.1e-47 Score=424.03 Aligned_cols=307 Identities=36% Similarity=0.555 Sum_probs=287.2
Q ss_pred cccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhhhHHHHHHhhhccccCCC-CCCCCcc
Q psy13788 338 LAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIR-GGSENVH 416 (1034)
Q Consensus 338 ~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l~~~~~~~~~~-~~~~~~~ 416 (1034)
+.+|++|++||+|||+++|+..|.+.+++.++..++|+++|.|.||+++++|++|..++.++.+. .+++.+ ...+.++
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~-~~~~~~~~~~~~~~ 80 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEK-LPIRLENPSLDDPH 80 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHh-CCcCcCCCCCCCch
Confidence 67999999999999999999999999999999999999999999999999999999999999876 444433 4466789
Q ss_pred hhHHHHHHHHHhCCCCCCcChHhhHHHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccCCCCCccccccccc
Q psy13788 417 GKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVT 496 (1034)
Q Consensus 417 ~Kv~~LLqa~i~~~~~~~~~l~gd~~~i~~~a~rll~al~ei~~~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~ql~~~~ 496 (1034)
.|+++|||||++|.+++.+++.+|+.+++++|.||++|+++||..+||...+..+++|+|||+||+|++.+||+||
T Consensus 81 ~K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Ql---- 156 (312)
T smart00611 81 VKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQL---- 156 (312)
T ss_pred HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccC----
Confidence 9999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcC-chhHHHHHHHhhcCCcceEEEEEEeeccceEEEEEEE
Q psy13788 497 NRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRD-PHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHLTI 574 (1034)
Q Consensus 497 ~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~-~~~g~~i~~~~~~~P~l~~~~~~~pit~~~l~v~l~~ 574 (1034)
|+++++.+++|+++|+ ++++|.+++++++..+++. ++.++++.+++++||++++++.++|++....++.+++
T Consensus 157 ------p~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i 230 (312)
T smart00611 157 ------PHLPEEILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTL 230 (312)
T ss_pred ------CCCCHHHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEE
Confidence 9999999999999998 9999999999999999985 4899999999999999999999999999999999999
Q ss_pred EeCCCCCccCCCCCCCcEEEEEEcCCCCeeEEEeeEEeecccccccCceeEEEEeecCCCCCCceEEEeecccccccccc
Q psy13788 575 KANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQ 654 (1034)
Q Consensus 575 ~~~~~~~~~~~~~~~e~~~l~v~D~~~~~i~~~~~~~l~~~~~~~~~~~~l~f~vpl~~p~p~~~~i~~~Sd~wlg~e~~ 654 (1034)
+++|.|+..+|++ .|.||+||+|+++|.|+|++++.+++... .....+.|.+|...+. .+|+++++||+|+|++..
T Consensus 231 ~~~~~~~~~~~~k-~e~~~l~v~d~~~~~il~~~~~~~~~~~~--~~~~~l~f~~P~~~~~-~~~~v~v~SD~y~g~d~~ 306 (312)
T smart00611 231 TVDLTWDDEIHGK-QEGWWLVIGDSDGNELLHIERFSLNKKNV--SEEVKLDFTAPATEGN-YQYTLRLVSDSYLGCDQE 306 (312)
T ss_pred EEEEEEcccccCC-cccEEEEEEeCCCCEEEEEEEEEEEeecC--CCcEEEEEEecCCCCc-ceEEEEEEecccCCcceE
Confidence 9999999999988 99999999999999999999999987664 3457889999988776 789999999999999999
Q ss_pred ccccc
Q psy13788 655 HSMSF 659 (1034)
Q Consensus 655 ~~vs~ 659 (1034)
.+++|
T Consensus 307 ~~i~~ 311 (312)
T smart00611 307 YPLSF 311 (312)
T ss_pred EEEee
Confidence 88765
No 8
>KOG0952|consensus
Probab=100.00 E-value=1.8e-47 Score=440.55 Aligned_cols=353 Identities=33% Similarity=0.520 Sum_probs=300.3
Q ss_pred ccccCCCCCCCCccccCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHH
Q psy13788 661 HLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFK 740 (1034)
Q Consensus 661 ~l~~p~~~~~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~ 740 (1034)
++.+|...+.+ ...-....++.+...+=..+|+|.+|+.+|+.+||.+|+++.|.+||||||||||.+|+|.|++.++
T Consensus 75 E~~~P~s~~~~--~~~~k~~~isdld~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik 152 (1230)
T KOG0952|consen 75 EVKIPASVPMP--MDGEKLLSISDLDDVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIK 152 (1230)
T ss_pred EEecCccCCCc--cccccceeEEecchhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 34555555444 2233344445555544357789999999999999999999999999999999999999999999998
Q ss_pred hC--------CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhcccc
Q psy13788 741 QC--------PEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQN 812 (1034)
Q Consensus 741 ~~--------~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~ 812 (1034)
++ ++.++|||+|++|||.+.++.|.++|.. +|++|..++||..........++|+|+|||+|+.+.|++.+
T Consensus 153 ~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~-~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~ 231 (1230)
T KOG0952|consen 153 EHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP-LGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVG 231 (1230)
T ss_pred hhccccccccCCceEEEEechHHHHHHHHHHHhhhccc-ccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeecc
Confidence 52 3689999999999999999999999988 89999999999987776688999999999999999987754
Q ss_pred c-cccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhccc-CCceeecCCCCc
Q psy13788 813 R-NYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNIT-KQGMYNFRPSVR 890 (1034)
Q Consensus 813 ~-~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~-~~~~~~~~~~~r 890 (1034)
. ..+..+++||+||+|+|.+++|+.+|.+++|+..+.......+|+|++|||+||..|++.||++. ..+++.|...+|
T Consensus 232 d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 232 DSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred chhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeeccccc
Confidence 4 44688999999999999999999999999999988888888999999999999999999999987 568999999999
Q ss_pred ccccEEEEecCCCCCCchhhhhccHHHHHHHH-hhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHH
Q psy13788 891 PVPLEVHISGFPGKQYCPRMAKMNKPIYTAIK-QHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMD 969 (1034)
Q Consensus 891 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~ 969 (1034)
|+|++..+.+...+........+.+..++.+. .+..+.+++|||.+|..+.++|+.|.+.....+....|+..+
T Consensus 312 PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~----- 386 (1230)
T KOG0952|consen 312 PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSP----- 386 (1230)
T ss_pred ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCCh-----
Confidence 99999999988777433334445555555543 446789999999999999999999999887776555555433
Q ss_pred HHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCC
Q psy13788 970 NIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 970 ~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Df 1032 (1034)
+++.|+++++.|+++||+||..+||..+|+ . |..|.++||+||.+++||+ .+
T Consensus 387 ------~~k~l~elf~~g~~iHhAGm~r~DR~l~E~--~--F~~G~i~vL~cTaTLAwGV-NL 438 (1230)
T KOG0952|consen 387 ------RNKQLKELFQQGMGIHHAGMLRSDRQLVEK--E--FKEGHIKVLCCTATLAWGV-NL 438 (1230)
T ss_pred ------hhHHHHHHHHhhhhhcccccchhhHHHHHH--H--HhcCCceEEEecceeeecc-CC
Confidence 566788999999999999999999999999 9 9999999999999999999 53
No 9
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=2.1e-45 Score=411.18 Aligned_cols=306 Identities=32% Similarity=0.575 Sum_probs=240.4
Q ss_pred cChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhhhHHHHHHhhhccccCC-CCCCCCcchh
Q psy13788 340 ITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPI-RGGSENVHGK 418 (1034)
Q Consensus 340 ~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l~~~~~~~~~-~~~~~~~~~K 418 (1034)
||++|++||+|||+++||..|.+.+++.++..++|.++|.|.||+++++|++|+.++.+|.+. .+++. ....+++..|
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~-~~~~~~~~~~~~~~~K 79 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKK-IPYPIKKEKINDPHIK 79 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCC-SSS--STS-TTSHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHh-cccCccccccccHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999977 77777 6778889999
Q ss_pred HHHHHHHHHhCCCCCCcChHhhHHHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccCCCCCccccccccccc
Q psy13788 419 VNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNR 498 (1034)
Q Consensus 419 v~~LLqa~i~~~~~~~~~l~gd~~~i~~~a~rll~al~ei~~~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~ql~~~~~~ 498 (1034)
+++|||||++|++++.+++..|+.+|++++.||++|++++|..++|...+..+++|+|||.||+|+..+||+||
T Consensus 80 ~~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Ql------ 153 (314)
T PF02889_consen 80 AFVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQL------ 153 (314)
T ss_dssp HHHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGS------
T ss_pred HHHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred CCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhcCCcceEEEEEEeeccce---EEEEEE
Q psy13788 499 GYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWEIPLLEIESKLLPITRTV---LKIHLT 573 (1034)
Q Consensus 499 ~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~~P~l~~~~~~~pit~~~---l~v~l~ 573 (1034)
|+++++.+++|.++|+ |+++|.++++++++.+++ ++++|+++.+++++||+++++++++|++... ++|+|.
T Consensus 154 ----p~i~~~~~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~~~~v~v~ 229 (314)
T PF02889_consen 154 ----PHIGEESLKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIVPILTVQVS 229 (314)
T ss_dssp ----TT--HHHHHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEECSEEEEEEE
T ss_pred ----CCCCHHHHHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccCCcEEEEEE
Confidence 9999999999999997 999999999999999996 8899999999999999999999999998888 999999
Q ss_pred EEeCCCCCccCCCCCCCcEEEEEEcCCCCeeEEEeeEEe-ecccccccCceeEEEEeecC-CCCCCceEEEeeccccccc
Q psy13788 574 IKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLL-SKKQVITKSEESLIMTIPLS-DPLPNQYLIRAMSDRYLGS 651 (1034)
Q Consensus 574 ~~~~~~~~~~~~~~~~e~~~l~v~D~~~~~i~~~~~~~l-~~~~~~~~~~~~l~f~vpl~-~p~p~~~~i~~~Sd~wlg~ 651 (1034)
+++.+.|+++||+.+.+.||++|+|++++.+++++++.+ +++ .+....++|.+|.. ++.+.+|.++++||+|+|.
T Consensus 230 i~~~~~~~~~~~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~---~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~ 306 (314)
T PF02889_consen 230 ITRKFSWSDRFPKKKKESWWLFVGDSKNNELLHFERITISKKK---SKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGL 306 (314)
T ss_dssp EEESSS-SST-SS--B--EEEEEEECCCTEEEEEEEE---SS-----EEEEEEEEE--SS-EE--EEEEEEEEESS-SS-
T ss_pred EEcccccccCCCCCCcccEEEEEEECCCCeEEEEeeeehhhhc---cCCcEEEEEEecCCCCCCCceEEEEEEECCcccc
Confidence 999999999999988999999999999999999999998 332 13467899999987 6667899999999999999
Q ss_pred cccccccc
Q psy13788 652 VVQHSMSF 659 (1034)
Q Consensus 652 e~~~~vs~ 659 (1034)
+...+++|
T Consensus 307 d~~~~i~~ 314 (314)
T PF02889_consen 307 DQEVPINF 314 (314)
T ss_dssp -EEEEEEE
T ss_pred ceEEEeeC
Confidence 99887754
No 10
>KOG0951|consensus
Probab=100.00 E-value=5.5e-43 Score=407.20 Aligned_cols=333 Identities=36% Similarity=0.542 Sum_probs=298.0
Q ss_pred cccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC---------CCeEEEEcCcHHHHHHHHH
Q psy13788 692 SLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---------EAKVVYIAPLKALVKERVA 762 (1034)
Q Consensus 692 ~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~---------~~~~lvi~Pt~~L~~q~~~ 762 (1034)
.+++...|+++|..+.++.+....|+++|||||+|||.++++.+++.+..+. ..+++|++|+++|+++++.
T Consensus 303 aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vg 382 (1674)
T KOG0951|consen 303 AFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVG 382 (1674)
T ss_pred hcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHH
Confidence 3456677999999999999878889999999999999999999999987642 3589999999999999999
Q ss_pred HHHHHhhhhcCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHH
Q psy13788 763 DWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIV 842 (1034)
Q Consensus 763 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il 842 (1034)
.+.+++.. +|++|...+|+.....+...+.+|+|||||+|+-+.+....+...+-++++|+||+|++.+++|+.++.++
T Consensus 383 sfSkRla~-~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIV 461 (1674)
T KOG0951|consen 383 SFSKRLAP-LGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIV 461 (1674)
T ss_pred HHHhhccc-cCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHH
Confidence 99999887 89999999999988888888999999999999999987667777788999999999999999999999999
Q ss_pred HHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHH
Q psy13788 843 SRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIK 922 (1034)
Q Consensus 843 ~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 922 (1034)
.|...-.......+|++|||||+||..|++.+++++..++|.|.+++||+|+...+.+...+.-..++..|+..+|+.+.
T Consensus 462 aRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm 541 (1674)
T KOG0951|consen 462 ARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVL 541 (1674)
T ss_pred HHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHH
Confidence 99988777778899999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred hhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCC---hHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHH
Q psy13788 923 QHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTS---DAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQ 999 (1034)
Q Consensus 923 ~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~ 999 (1034)
++....++||||.||+++-++|+.+...+..++....|...+ .+-+....+..+++.|+.+|++|+++||+||+..+
T Consensus 542 ~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~d 621 (1674)
T KOG0951|consen 542 EHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKD 621 (1674)
T ss_pred HhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcch
Confidence 998889999999999999999999997655543222222222 12233446777899999999999999999999999
Q ss_pred HHHhcccchhHhhcCCceEEEechhhhhcc
Q psy13788 1000 SSALQMPKLAALSSKENQNVINRSTSANGN 1029 (1034)
Q Consensus 1000 R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv 1029 (1034)
|..+|+ + |++|+++|+|+|.+++|||
T Consensus 622 R~~~Ed--L--f~~g~iqvlvstatlawgv 647 (1674)
T KOG0951|consen 622 RELVED--L--FADGHIQVLVSTATLAWGV 647 (1674)
T ss_pred HHHHHH--H--HhcCceeEEEeehhhhhhc
Confidence 999999 9 9999999999999999999
No 11
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3e-41 Score=416.40 Aligned_cols=327 Identities=24% Similarity=0.383 Sum_probs=256.7
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKA 755 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~ 755 (1034)
+|++.....+... |+.+|+|+|.+|++..+.+|+|++++||||||||++|++|+++.+.. +.++||++|+++
T Consensus 7 ~lp~~~~~~l~~~------g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--~~kal~i~P~ra 78 (737)
T PRK02362 7 PLPEGVIEFYEAE------GIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--GGKALYIVPLRA 78 (737)
T ss_pred CCCHHHHHHHHhC------CCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--CCcEEEEeChHH
Confidence 4555555555544 45569999999999855589999999999999999999999998864 789999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CC
Q psy13788 756 LVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DR 834 (1034)
Q Consensus 756 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~ 834 (1034)
|+.|++++|++ +.+ .|+++..++|+...+......++|+|+|||+++.++++ ...++++++++|+||+|++++ .+
T Consensus 79 La~q~~~~~~~-~~~-~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~--~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFER-FEE-LGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRN--GAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHH-hhc-CCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhc--ChhhhhhcCEEEEECccccCCCcc
Confidence 99999999984 554 58999999999877666667789999999999999884 345678999999999999987 89
Q ss_pred hhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhcc
Q psy13788 835 GPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMN 914 (1034)
Q Consensus 835 ~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 914 (1034)
|+.++.++++++++ ..+.|+|++|||++|++++++|++... +.+..||+++...+.......+......+.
T Consensus 155 g~~le~il~rl~~~----~~~~qii~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~ 225 (737)
T PRK02362 155 GPTLEVTLAKLRRL----NPDLQVVALSATIGNADELADWLDAEL-----VDSEWRPIDLREGVFYGGAIHFDDSQREVE 225 (737)
T ss_pred hHHHHHHHHHHHhc----CCCCcEEEEcccCCCHHHHHHHhCCCc-----ccCCCCCCCCeeeEecCCeeccccccccCC
Confidence 99999999998754 356899999999999999999998642 567778888876554322211111111111
Q ss_pred ----HHHHHHHH-hhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhc-------CCHHHHH
Q psy13788 915 ----KPIYTAIK-QHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNI-------KDSNLKL 982 (1034)
Q Consensus 915 ----~~~~~~l~-~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~d~~l~~ 982 (1034)
...+..+. ....++++||||+|+++|+.+|..|........ .......+..+.+.+ .+..|..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 300 (737)
T PRK02362 226 VPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTL-----TAAERAELAELAEEIREVSDTETSKDLAD 300 (737)
T ss_pred CccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHhccCccccHHHHH
Confidence 22333332 234578999999999999999999987654211 111223344444444 5678999
Q ss_pred HhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 983 TIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 983 ~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++..||++|||||++++|+.+++ . |++|.++|||||+++++|+ |+.
T Consensus 301 ~l~~gva~hHagl~~~eR~~ve~--~--Fr~G~i~VLvaT~tla~Gv-nlP 346 (737)
T PRK02362 301 CVAKGAAFHHAGLSREHRELVED--A--FRDRLIKVISSTPTLAAGL-NLP 346 (737)
T ss_pred HHHhCEEeecCCCCHHHHHHHHH--H--HHcCCCeEEEechhhhhhc-CCC
Confidence 99999999999999999999999 8 9999999999999999999 863
No 12
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.5e-42 Score=376.25 Aligned_cols=414 Identities=15% Similarity=0.191 Sum_probs=289.1
Q ss_pred ccccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccch--hhh--hhH------HHhhccccCCceEEecc
Q psy13788 4 LTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSL--NRI--QSL------VYDTAYHTNENLLICAP 72 (1034)
Q Consensus 4 ~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~--~~~--~~~------~~~~~~~~~~~~~v~~~ 72 (1034)
-+.+||+|||||||||.| +|||+|++||.|+++..+..|+|++|++ |+- ... .|+..--|.|+|++|++
T Consensus 335 ~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~~ 414 (830)
T COG1202 335 DLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFAR 414 (830)
T ss_pred cccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCeeEeecCCCCChhHeeeeec
Confidence 468999999999999999 9999999999998888888999999872 221 111 12222226789999999
Q ss_pred CCcchhHHHHHHHHHHHHHHhhccccceeccccceecchh--HHHH---------HHhhhcCCCccccccccccccchhh
Q psy13788 73 TGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGI--LDVL---------QIFGRAGRPQYNTSDLGRTASNYYI 141 (1034)
Q Consensus 73 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~h~~~--~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~ 141 (1034)
++.+|++.....+..++...+++|+ +++..+|..+.- .++. ...++++.++..+..++..|+.+.+
T Consensus 415 ~e~eK~~ii~~L~k~E~~~~sskg~---rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l 491 (830)
T COG1202 415 NESEKWDIIARLVKREFSTESSKGY---RGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQEL 491 (830)
T ss_pred CchHHHHHHHHHHHHHHhhhhccCc---CCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCc
Confidence 9999988776666667766677665 444455554321 1222 2233444444444444555555555
Q ss_pred hc--------cCcccceEEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHhcCCc
Q psy13788 142 KH--------NDIELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQI 213 (1034)
Q Consensus 142 ~~--------~gvn~pa~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~~~~ 213 (1034)
++ |||++||+.||..+-.+ |.+|+++.||+||.||||||+|++.|.+++++.+.+ +|...+.+.+
T Consensus 492 ~~VVTTAAL~AGVDFPASQVIFEsLaM-----G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~--~Y~~~m~~TE 564 (830)
T COG1202 492 AAVVTTAALAAGVDFPASQVIFESLAM-----GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK--KYHASMEETE 564 (830)
T ss_pred ceEeehhhhhcCCCCchHHHHHHHHHc-----ccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh--hhcccccccH
Confidence 44 79999997776555444 579999999999999999999999999999999986 7777555554
Q ss_pred c-eecccccchHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCc
Q psy13788 214 P-IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINP 292 (1034)
Q Consensus 214 ~-i~s~l~~~~~~~ln~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p 292 (1034)
. +.-.|.++-++.+-.|. .++... .++|+ ..|..++..++.+.-.-++...
T Consensus 565 devA~kLL~s~~e~V~vey-------~ee~e~-------------e~vLA--~~~v~~s~~~i~~v~~~~~g~~------ 616 (830)
T COG1202 565 DEVAFKLLESEPEPVIVEY-------DEEDEE-------------ENVLA--SAGVTNSLSVIERVNSLMLGAA------ 616 (830)
T ss_pred HHHHHHHhcCCCCcceecc-------CcHHHH-------------HHHHH--HhhhcCcHHHHhhcChhhcccc------
Confidence 3 44555554444444444 222333 55666 4445555554443322222221
Q ss_pred cccCCCccccCCChhHHHHHHHHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHH
Q psy13788 293 REYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVG 372 (1034)
Q Consensus 293 ~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~ 372 (1034)
. + .+.+++.|+++|||..+ ++.+.+|++|+++|.||+.|.++..+.+.+...+ +
T Consensus 617 ------~-----~----------~~k~l~~Lee~g~i~~~--G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v~~~~---~ 670 (830)
T COG1202 617 ------F-----D----------PKKALSKLEEYGMIKKK--GNIVRPTPYGRAVAMSFLGPSEAEFIREGVLASM---D 670 (830)
T ss_pred ------C-----C----------HHHHHHHHHhcCCeecc--CCEeeeccccceeEEeecCchHHHHHHHhhhccC---C
Confidence 1 1 34678999999999886 6789999999999999999999999999864443 5
Q ss_pred HHHhhccccccccCcCChhhhHHHHHHhhhccccCCCC---------------CCCCcchhHHHHHHHHHhCCCC-----
Q psy13788 373 ILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRG---------------GSENVHGKVNILLQTLLSRGRV----- 432 (1034)
Q Consensus 373 lL~ll~~s~EF~~i~~r~~E~~~l~~l~~~~~~~~~~~---------------~~~~~~~Kv~~LLqa~i~~~~~----- 432 (1034)
.|.+++....|++.++...-+..+........+..+-. -......|+..+.++++++..-
T Consensus 671 pl~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~df~~c~c~d~ce~ 750 (830)
T COG1202 671 PLRIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYMDFLNCTCRDCCEC 750 (830)
T ss_pred hHhHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHhcCchhhhHHH
Confidence 67788888999999988776666666543322222110 0112345566777777765221
Q ss_pred ---------------------------CCcChH---hhHHHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Q psy13788 433 ---------------------------NSFSLV---SDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETK 481 (1034)
Q Consensus 433 ---------------------------~~~~l~---gd~~~i~~~a~rll~al~ei~~~~~~~~~~~~~l~L~k~l~~~ 481 (1034)
+.|+++ ||+.++++++.|.+.|+-+||..++....+..+..+.+.++.|
T Consensus 751 ~~~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~ie~~ 829 (830)
T COG1202 751 AEQRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALKKKIEEG 829 (830)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhcC
Confidence 156655 9999999999999999999999999988888999998888754
No 13
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.4e-40 Score=399.39 Aligned_cols=318 Identities=31% Similarity=0.445 Sum_probs=250.7
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
++.|.|+.++...+.+++|+++++|||||||+++++++++.+.++ +.++|||||+++||.|.+++|+ ++.. +|+++.
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa~Ek~~~~~-~~~~-~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALAEEKYEEFS-RLEE-LGIRVG 107 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-CCcEEEEeChHHHHHHHHHHhh-hHHh-cCCEEE
Confidence 466666666665554689999999999999999999999998875 7899999999999999999998 6666 899999
Q ss_pred EEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCC-ChhHHHHHHHHHHHhhhccCCCe
Q psy13788 778 ELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED-RGPVLEVIVSRVNFISSYTKRNV 856 (1034)
Q Consensus 778 ~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~-~~~~~~~il~rl~~l~~~~~~~~ 856 (1034)
..+||.......+.+++|+|+|||+|+.+.|++ ..++..+++||+||+|.+.+. +|+.++.++++++.. ...+
T Consensus 108 ~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~--~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~----~~~~ 181 (766)
T COG1204 108 ISTGDYDLDDERLARYDVIVTTPEKLDSLTRKR--PSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRL----NELI 181 (766)
T ss_pred EecCCcccchhhhccCCEEEEchHHhhHhhhcC--cchhhcccEEEEeeeeecCCcccCceehhHHHHHHhh----Ccce
Confidence 999999988878889999999999999999954 348899999999999999995 999999999999754 3458
Q ss_pred EEEEEccCCCCHHHHHhHhcccCC-ceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHH-HHHHhhCCCCCeEEEe
Q psy13788 857 RLVGLSTALANAKDLATWLNITKQ-GMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIY-TAIKQHSPEKPVMIFV 934 (1034)
Q Consensus 857 ~iv~lSATl~~~~~l~~~l~~~~~-~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~lVF~ 934 (1034)
|++++|||+||..+++.|++.... ..+.+.+..++++....+........ .........++ ..+.....++++||||
T Consensus 182 rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~~~~~~~~~v~~~~~~~~qvLvFv 260 (766)
T COG1204 182 RIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLLIDNLALELVLESLAEGGQVLVFV 260 (766)
T ss_pred EEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-cccccchHHHHHHHHHHHhcCCeEEEEE
Confidence 999999999999999999998754 45666777788887777665544332 11111122222 2334455788999999
Q ss_pred cChHHHHHHHHHHHHHHhccCCCCccc--CCChHHHH-HHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHh
Q psy13788 935 SSRRQTRLTAIDLITILACETNPKMWV--HTSDAEMD-NIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAAL 1011 (1034)
Q Consensus 935 ~s~~~~~~~a~~L~~~~~~~~~~~~~~--~~~~~~~~-~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f 1011 (1034)
+||+.+..+|+.+.............. ....+... .-.....+..|..++..|+++||+||+.++|+.+|+ . |
T Consensus 261 ~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~--~--F 336 (766)
T COG1204 261 HSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVED--A--F 336 (766)
T ss_pred ecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHH--H--H
Confidence 999999999999986444322111110 00011111 111122346899999999999999999999999999 8 9
Q ss_pred hcCCceEEEechhhhhcc
Q psy13788 1012 SSKENQNVINRSTSANGN 1029 (1034)
Q Consensus 1012 ~~g~i~VLVaT~~l~~Gv 1029 (1034)
+.|+++|||||++++|||
T Consensus 337 r~g~ikVlv~TpTLA~GV 354 (766)
T COG1204 337 RKGKIKVLVSTPTLAAGV 354 (766)
T ss_pred hcCCceEEEechHHhhhc
Confidence 999999999999999999
No 14
>KOG0950|consensus
Probab=100.00 E-value=6.5e-41 Score=385.99 Aligned_cols=472 Identities=16% Similarity=0.218 Sum_probs=319.0
Q ss_pred cccccccEEEEeeeecccC-CCCchHHHHHHhhhhcccc--ceeecccchhh--------hhhHHHhhcccc--------
Q psy13788 3 ALTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQ--EVFKGVKSLNR--------IQSLVYDTAYHT-------- 63 (1034)
Q Consensus 3 ~~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~--~~~~~~~~~~~--------~~~~~~~~~~~~-------- 63 (1034)
.-...+|+|||||+||++| +||+.+|.++++++..... .|+||||++.+ +++.+|.+.|||
T Consensus 337 g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik 416 (1008)
T KOG0950|consen 337 GRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIK 416 (1008)
T ss_pred CCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccC
Confidence 4467899999999999999 9999999999998865543 56999998433 234455666663
Q ss_pred -------------------------------------------CCceEEeccCCcchhHHHHHHHHHHHHHHhh-----c
Q psy13788 64 -------------------------------------------NENLLICAPTGAGKTNVAMLTIAHQIKQHIS-----Q 95 (1034)
Q Consensus 64 -------------------------------------------~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~-----~ 95 (1034)
+.++++|||...+..+.+. ..++...++.. .
T Consensus 417 ~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~-~~~~~vpk~~~~e~~~~ 495 (1008)
T KOG0950|consen 417 PGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVAS-LIAKKVPKHIKSEKRLG 495 (1008)
T ss_pred CCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHH-HHHHHhhHhhhhhhhhh
Confidence 1137787765333333221 12211111110 0
Q ss_pred ----------------cc--c-ceeccccc-eecchhH-HHHHHhhhcCCCccccccccccccchhhhccCcccce-EEE
Q psy13788 96 ----------------GT--E-MYNAKHGC-YVHIGIL-DVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHM 153 (1034)
Q Consensus 96 ----------------~~--~-~~~~~~g~-~~h~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vi 153 (1034)
+. . ......|+ |||+|++ +.++..+.+++.+ .+....+|.+++ +|||+|| +||
T Consensus 496 ~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g----~i~vl~aTSTla-aGVNLPArRVI 570 (1008)
T KOG0950|consen 496 LWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREG----NIFVLVATSTLA-AGVNLPARRVI 570 (1008)
T ss_pred HHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhc----CeEEEEecchhh-ccCcCCcceeE
Confidence 00 0 11124788 9999998 3333333332221 222222333333 4899999 788
Q ss_pred ecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHhcCC-cceecccccchHHHHhhhhh
Q psy13788 154 TKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ-IPIESNFVANLADNLNAEVA 232 (1034)
Q Consensus 154 i~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~~~-~~i~s~l~~~~~~~ln~e~~ 232 (1034)
|+.+.+. ...++..+|+||+|||||.|+||.|++|+|++..++..+..++..+ .|+.|++.+ |.
T Consensus 571 iraP~~g------~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~--------e~- 635 (1008)
T KOG0950|consen 571 IRAPYVG------REFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSN--------EV- 635 (1008)
T ss_pred EeCCccc------cchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhcccccccccccc--------cc-
Confidence 8866544 2778899999999999999999999999999998888888888766 558888843 33
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHH
Q psy13788 233 LGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHR 312 (1034)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~ 312 (1034)
.-...+.+|++|++|...|.+|+..+..+|+++.+.... +-..+.+. ...
T Consensus 636 --------------------~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~q~~~~--~~~~~le~--------~s~ 685 (1008)
T KOG0950|consen 636 --------------------NGPILMAILSLISLKIAETAEDILHFVAVTLLSAQEKPE--NVREQLEM--------ESD 685 (1008)
T ss_pred --------------------ccccceeehhhhcchhhhhHHHHHHHHHHhhhhcccchh--hhhhcccc--------hhh
Confidence 111237899999999999999999999999999844321 11111111 000
Q ss_pred HHHHHHHH-HHhhhcCceEEec-CCCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCH---HHHHHhhccccccccCc
Q psy13788 313 TTLIENAA-QILDKAHMIRFNM-RTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDD---VGILSMISQAHEFEQLK 387 (1034)
Q Consensus 313 ~~~~~~~l-~~L~~~~~i~~~~-~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~---~~lL~ll~~s~EF~~i~ 387 (1034)
...+..+. +++.++.+|.... ......+|++|+++-...++|+.+..++..|.+.+.. ...++++-....|....
T Consensus 686 ql~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~~vle~~lh~lylvtP~~~~~ 765 (1008)
T KOG0950|consen 686 QLVINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSDPEVANILFADLKKSLPQLVLESSLHLLYLVTPYLEVM 765 (1008)
T ss_pred hhccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCChhhhHHHHHHHHHhhhccccccccceeeeecchHhhc
Confidence 11111121 4555556665211 1222339999999999999999999999999876211 11224444444442221
Q ss_pred CChhhhHHHHHHhhhc--------------cccC---CCCC--CC------CcchhHHHHHHHHHhCCCCC----CcChH
Q psy13788 388 VRDEELHELDNLTQEC--------------CEIP---IRGG--SE------NVHGKVNILLQTLLSRGRVN----SFSLV 438 (1034)
Q Consensus 388 ~r~~E~~~l~~l~~~~--------------~~~~---~~~~--~~------~~~~Kv~~LLqa~i~~~~~~----~~~l~ 438 (1034)
- ..+...+-.+.... ..+. ..+. .+ ..+..+.+.||.++++.++. +|++.
T Consensus 766 ~-~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gqs~~~~~~~~~~~r~y~~l~L~~li~espi~~V~~kYk~~ 844 (1008)
T KOG0950|consen 766 N-DIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQSVRNLQNVQKRKRLYVALALQKLINESPIRTVAEKYKVE 844 (1008)
T ss_pred c-cccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHhhCcHHHHHHHhCch
Confidence 1 11111111111110 0000 0110 00 02334788999999999985 78888
Q ss_pred -hhHHHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccCCCCCcccccccccccCCCCCCCCHHHHHHHHhcC
Q psy13788 439 -SDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIEQRG 517 (1034)
Q Consensus 439 -gd~~~i~~~a~rll~al~ei~~~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g 517 (1034)
|.++..++++..++.++..+|...+|......+.++.+++.+|...++.||+.+ |++...++++|+.+|
T Consensus 845 rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~~rl~~g~~~eL~~Lmrv----------~~~~~~RAr~lf~Ag 914 (1008)
T KOG0950|consen 845 RGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFYGRLSFGGHAELIPLMRV----------PDVKAERARQLFKAG 914 (1008)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHHHHHhccchhhhhhhhcC----------chhHHHHHHHHHHhh
Confidence 999999999999999999999999999777778889999999999999999999 999999999999999
Q ss_pred C-CHHHHhcCCHHHHHhhhc
Q psy13788 518 L-TVEDLREMPAKEISYMLR 536 (1034)
Q Consensus 518 ~-t~~~l~~~~~~el~~~l~ 536 (1034)
+ |+.+++++++.++++.+.
T Consensus 915 f~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 915 FTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred ccchHHHhcCChHHHHHHhh
Confidence 9 999999999999998765
No 15
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.9e-39 Score=395.79 Aligned_cols=321 Identities=27% Similarity=0.437 Sum_probs=249.8
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKA 755 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~ 755 (1034)
++++.....+... |+.+|+|+|.+|++..+.+|+|++++||||||||++|.+|+++.+.. ++.++||++|+++
T Consensus 7 ~l~~~~~~~l~~~------g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~a 79 (720)
T PRK00254 7 RVDERIKRVLKER------GIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKA 79 (720)
T ss_pred CCCHHHHHHHHhC------CCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHH
Confidence 3444444445444 45569999999999755589999999999999999999999988765 3689999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CC
Q psy13788 756 LVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DR 834 (1034)
Q Consensus 756 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~ 834 (1034)
|+.|++++|.. +.. .++++..++|+..........++|+|+||+++..+++. ...++++++++|+||+|.+++ .+
T Consensus 80 La~q~~~~~~~-~~~-~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~--~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKD-WEK-LGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHH-Hhh-cCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhC--CchhhhcCCEEEEcCcCccCCccc
Confidence 99999999975 544 68999999999876655567899999999999988873 345689999999999999987 78
Q ss_pred hhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEE--ecCCCCCCch---h
Q psy13788 835 GPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHI--SGFPGKQYCP---R 909 (1034)
Q Consensus 835 ~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~--~~~~~~~~~~---~ 909 (1034)
|..++.+++++ ..+.|+|++|||++|++++++|++... +.+..||+++...+ .++....... .
T Consensus 156 g~~le~il~~l-------~~~~qiI~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T PRK00254 156 GATLEMILTHM-------LGRAQILGLSATVGNAEELAEWLNAEL-----VVSDWRPVKLRKGVFYQGFLFWEDGKIERF 223 (720)
T ss_pred hHHHHHHHHhc-------CcCCcEEEEEccCCCHHHHHHHhCCcc-----ccCCCCCCcceeeEecCCeeeccCcchhcc
Confidence 99999888755 356899999999999999999998653 45667888775322 2211111000 0
Q ss_pred hhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCC-hHHHHHHHhh----cCCHHHHHHh
Q psy13788 910 MAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTS-DAEMDNIVDN----IKDSNLKLTI 984 (1034)
Q Consensus 910 ~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~----i~d~~l~~~l 984 (1034)
...+...+++.+. .++++||||+|++.|+.+|..|...+.. ++..+ ..+++.+.+. ..+..|..++
T Consensus 224 ~~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 294 (720)
T PRK00254 224 PNSWESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKR------FLTKPELRALKELADSLEENPTNEKLKKAL 294 (720)
T ss_pred hHHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 1233344555554 3679999999999999999999776532 11111 2334444433 4577899999
Q ss_pred hhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 985 AFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 985 ~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
..||++|||||++++|+.+++ + |++|.++|||||+++++|| |+.
T Consensus 295 ~~gv~~hHagl~~~eR~~ve~--~--F~~G~i~VLvaT~tLa~Gv-nip 338 (720)
T PRK00254 295 RGGVAFHHAGLGRTERVLIED--A--FREGLIKVITATPTLSAGI-NLP 338 (720)
T ss_pred hhCEEEeCCCCCHHHHHHHHH--H--HHCCCCeEEEeCcHHhhhc-CCC
Confidence 999999999999999999999 8 9999999999999999999 873
No 16
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=6.8e-38 Score=384.37 Aligned_cols=307 Identities=28% Similarity=0.423 Sum_probs=242.8
Q ss_pred ccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 695 KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 695 ~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
+|. ++|+|.+|++.+. +++|++++||||||||+++++++++.+.. +.++||++|+++|+.|++++|.+ +.. .|.
T Consensus 20 ~~~-l~~~Q~~ai~~l~-~~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~~~-l~~-~g~ 93 (674)
T PRK01172 20 DFE-LYDHQRMAIEQLR-KGENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSR-LRS-LGM 93 (674)
T ss_pred CCC-CCHHHHHHHHHHh-cCCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHHHH-Hhh-cCC
Confidence 344 9999999999986 89999999999999999999999988875 67999999999999999999985 443 688
Q ss_pred eEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhccC
Q psy13788 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTK 853 (1034)
Q Consensus 775 ~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~ 853 (1034)
++...+|+..........++|+|+||++++.+++++ ...+++++++|+||||++++ .+|+.++.++.+++++ .
T Consensus 94 ~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~--~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~----~ 167 (674)
T PRK01172 94 RVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHD--PYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV----N 167 (674)
T ss_pred eEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCC--hhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc----C
Confidence 999999987765555568899999999999998854 35588999999999999987 7999999999888654 3
Q ss_pred CCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHh-hCCCCCeEE
Q psy13788 854 RNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQ-HSPEKPVMI 932 (1034)
Q Consensus 854 ~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~lV 932 (1034)
.+.|+|++|||++|.+++++|++... +.+..||++++..+........... ......+...+.. ...++++||
T Consensus 168 ~~~riI~lSATl~n~~~la~wl~~~~-----~~~~~r~vpl~~~i~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~vLV 241 (674)
T PRK01172 168 PDARILALSATVSNANELAQWLNASL-----IKSNFRPVPLKLGILYRKRLILDGY-ERSQVDINSLIKETVNDGGQVLV 241 (674)
T ss_pred cCCcEEEEeCccCCHHHHHHHhCCCc-----cCCCCCCCCeEEEEEecCeeeeccc-ccccccHHHHHHHHHhCCCcEEE
Confidence 57899999999999999999998653 5667788888765543221111000 0011112333333 345679999
Q ss_pred EecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhh
Q psy13788 933 FVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALS 1012 (1034)
Q Consensus 933 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~ 1012 (1034)
||+++++|+.+|..|.+........ .... ......++.|..+++.||++|||+|++++|+.+++ . |+
T Consensus 242 F~~sr~~~~~~a~~L~~~~~~~~~~----~~~~-----~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~--~--f~ 308 (674)
T PRK01172 242 FVSSRKNAEDYAEMLIQHFPEFNDF----KVSS-----ENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE--M--FR 308 (674)
T ss_pred EeccHHHHHHHHHHHHHhhhhcccc----cccc-----cccccccHHHHHHHhcCEEEecCCCCHHHHHHHHH--H--HH
Confidence 9999999999999998765432110 0000 01234577899999999999999999999999999 8 99
Q ss_pred cCCceEEEechhhhhccCCCC
Q psy13788 1013 SKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1013 ~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+|.++|||||+++++|+ |+.
T Consensus 309 ~g~i~VLvaT~~la~Gv-nip 328 (674)
T PRK01172 309 NRYIKVIVATPTLAAGV-NLP 328 (674)
T ss_pred cCCCeEEEecchhhccC-CCc
Confidence 99999999999999999 874
No 17
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.5e-37 Score=371.62 Aligned_cols=326 Identities=18% Similarity=0.175 Sum_probs=237.4
Q ss_pred ccCCCCCCCCccc-cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh
Q psy13788 663 IVPELHPPHTNLL-ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ 741 (1034)
Q Consensus 663 ~~p~~~~~~~~ll-~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~ 741 (1034)
.+|..++.+.++. .+++....+|...+ |..|+|+|.+|++.++ .|+|+++++|||||||++|++|+++.+.+
T Consensus 6 ~~p~~~a~~~~~~~~l~~~l~~~L~~~g------~~~p~~~Q~~ai~~il-~G~nvvv~apTGSGKTla~~LPiL~~l~~ 78 (742)
T TIGR03817 6 HLPARAGRTAPWPAWAHPDVVAALEAAG------IHRPWQHQARAAELAH-AGRHVVVATGTASGKSLAYQLPVLSALAD 78 (742)
T ss_pred ecCCCCcccCCCCCcCCHHHHHHHHHcC------CCcCCHHHHHHHHHHH-CCCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 3566666555542 35555566665544 5559999999999998 89999999999999999999999999987
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc--cCCCcEEEECHhhHHH-HHhc-cccccccC
Q psy13788 742 CPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA--ISSASVIVTTPEKWDG-VSRS-WQNRNYVQ 817 (1034)
Q Consensus 742 ~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~~~IiV~Tpe~l~~-l~~~-~~~~~~l~ 817 (1034)
.++.++||++||+||+.|+.+.+++. . ..++++..++|+.+.+.+. ..+++|+|+||+++.. ++.. ......++
T Consensus 79 ~~~~~aL~l~PtraLa~q~~~~l~~l-~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~ 156 (742)
T TIGR03817 79 DPRATALYLAPTKALAADQLRAVREL-T-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLR 156 (742)
T ss_pred CCCcEEEEEcChHHHHHHHHHHHHHh-c-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHh
Confidence 77889999999999999999999854 3 3578899999988755432 3468999999999853 2221 01123478
Q ss_pred cccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccc-cEE
Q psy13788 818 SVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVP-LEV 896 (1034)
Q Consensus 818 ~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~-l~~ 896 (1034)
++++||+||||.+.+.||..+..++.+++.+....+.+.|++++|||++|+.++++++...+ +.....+..+.. ..+
T Consensus 157 ~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~--~~~i~~~~~~~~~~~~ 234 (742)
T TIGR03817 157 RLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAP--VVAVTEDGSPRGARTV 234 (742)
T ss_pred cCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCC--eEEECCCCCCcCceEE
Confidence 99999999999998789999999999999887777888999999999999888777654332 222222222221 111
Q ss_pred EEecCC-----CCCC----chhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHH
Q psy13788 897 HISGFP-----GKQY----CPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAE 967 (1034)
Q Consensus 897 ~~~~~~-----~~~~----~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 967 (1034)
.+...+ .... ..........+...+. .+.++||||+|++.|+.++..|...+....
T Consensus 235 ~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~------------ 299 (742)
T TIGR03817 235 ALWEPPLTELTGENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVD------------ 299 (742)
T ss_pred EEecCCccccccccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhc------------
Confidence 111111 0000 0000111111222222 357999999999999999998876543211
Q ss_pred HHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 968 MDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 968 ~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
..++.+|..|||++++++|+.+++ . |++|++++||||+++++|| |+.
T Consensus 300 --------------~~l~~~v~~~hgg~~~~eR~~ie~--~--f~~G~i~vLVaTd~lerGI-DI~ 346 (742)
T TIGR03817 300 --------------PDLAERVAAYRAGYLPEDRRELER--A--LRDGELLGVATTNALELGV-DIS 346 (742)
T ss_pred --------------cccccchhheecCCCHHHHHHHHH--H--HHcCCceEEEECchHhccC-Ccc
Confidence 012335889999999999999999 8 9999999999999999999 985
No 18
>KOG0330|consensus
Probab=100.00 E-value=4.1e-37 Score=320.90 Aligned_cols=296 Identities=17% Similarity=0.220 Sum_probs=225.9
Q ss_pred ccCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC-CCeEEEEcCc
Q psy13788 675 LELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP-EAKVVYIAPL 753 (1034)
Q Consensus 675 l~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~-~~~~lvi~Pt 753 (1034)
+++.|.++.+++..++.. |+++|++++|.++ +|+|++..|.||||||.+|++|+++.+.+++ ..+++|++||
T Consensus 66 Lgv~~~L~~ac~~l~~~~------PT~IQ~~aiP~~L-~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPt 138 (476)
T KOG0330|consen 66 LGVHPELLEACQELGWKK------PTKIQSEAIPVAL-GGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPT 138 (476)
T ss_pred cCcCHHHHHHHHHhCcCC------Cchhhhhhcchhh-CCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCc
Confidence 388899999998877655 9999999999998 8999999999999999999999999988765 4799999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEeccccc
Q psy13788 754 KALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 754 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l 830 (1034)
|||+.|+.+.+. .++...|+++..+.|+.+...+. .+.++|+|+||+++..++.+. ....+..++++|+||||.+
T Consensus 139 RELA~QI~e~fe-~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T-kgf~le~lk~LVlDEADrl 216 (476)
T KOG0330|consen 139 RELAQQIAEQFE-ALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT-KGFSLEQLKFLVLDEADRL 216 (476)
T ss_pred HHHHHHHHHHHH-HhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc-cCccHHHhHHHhhchHHhh
Confidence 999999888776 68777999999999998866554 468999999999998888753 3455789999999999999
Q ss_pred CC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCCcccc-cEEEEecCCCCCCc
Q psy13788 831 GE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSVRPVP-LEVHISGFPGKQYC 907 (1034)
Q Consensus 831 ~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~~~-l~~~~~~~~~~~~~ 907 (1034)
++ +|...+..|+..+ +...|.+++|||++.. +.+. ....+.+.-+.....++.++ +..++..++..+
T Consensus 217 Ld~dF~~~ld~ILk~i-------p~erqt~LfsATMt~kv~kL~-rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~-- 286 (476)
T KOG0330|consen 217 LDMDFEEELDYILKVI-------PRERQTFLFSATMTKKVRKLQ-RASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD-- 286 (476)
T ss_pred hhhhhHHHHHHHHHhc-------CccceEEEEEeecchhhHHHH-hhccCCCeEEeccchhcchHHhhhheEeccccc--
Confidence 98 8988888887544 5788999999999763 2222 22222222222122222111 111111111111
Q ss_pred hhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhc
Q psy13788 908 PRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFG 987 (1034)
Q Consensus 908 ~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~g 987 (1034)
....+...+.. ..+.++||||++...++.++-.|... ++.
T Consensus 287 -----K~~yLV~ll~e-~~g~s~iVF~~t~~tt~~la~~L~~l----------------------------------g~~ 326 (476)
T KOG0330|consen 287 -----KDTYLVYLLNE-LAGNSVIVFCNTCNTTRFLALLLRNL----------------------------------GFQ 326 (476)
T ss_pred -----cchhHHHHHHh-hcCCcEEEEEeccchHHHHHHHHHhc----------------------------------Ccc
Confidence 11223334443 45689999999999999888766543 333
Q ss_pred hhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 988 IGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 988 v~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
...+||.|++..|.-..+ . |++|...||||||+++||+ |..+
T Consensus 327 a~~LhGqmsq~~Rlg~l~--~--Fk~~~r~iLv~TDVaSRGL-Dip~ 368 (476)
T KOG0330|consen 327 AIPLHGQMSQSKRLGALN--K--FKAGARSILVCTDVASRGL-DIPH 368 (476)
T ss_pred eecccchhhHHHHHHHHH--H--HhccCCcEEEecchhcccC-CCCC
Confidence 677999999999988877 6 9999999999999999999 9853
No 19
>KOG0331|consensus
Probab=100.00 E-value=1.4e-36 Score=339.84 Aligned_cols=296 Identities=17% Similarity=0.197 Sum_probs=221.2
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh-------CCCCeEE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-------CPEAKVV 748 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~-------~~~~~~l 748 (1034)
++++....++... +|..|+|+|.+++|.++ .|+|++..|.||||||++|++|++.++.. ..++++|
T Consensus 97 ~ls~~~~~~lk~~------g~~~PtpIQaq~wp~~l-~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 97 GLSEELMKALKEQ------GFEKPTPIQAQGWPIAL-SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred cccHHHHHHHHhc------CCCCCchhhhcccceec-cCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 4444444445444 45569999999999998 89999999999999999999999998875 2368999
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEe
Q psy13788 749 YIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIID 825 (1034)
Q Consensus 749 vi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViD 825 (1034)
|++||||||.|+...+. .++..++++..+++|+.+...+. .++.+|+|+||+++..++. .+...++++.++|+|
T Consensus 170 VL~PTRELA~QV~~~~~-~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le--~g~~~l~~v~ylVLD 246 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAR-EFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLE--EGSLNLSRVTYLVLD 246 (519)
T ss_pred EEcCcHHHHHHHHHHHH-HHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHH--cCCccccceeEEEec
Confidence 99999999999888877 56666788899999998876554 4579999999999999988 567788999999999
Q ss_pred cccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCC--CcccccEEEEecC
Q psy13788 826 EIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPS--VRPVPLEVHISGF 901 (1034)
Q Consensus 826 EaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~--~r~~~l~~~~~~~ 901 (1034)
|||.|++ +|.++++.|+.++. +...|.+++|||.|. .+.++.-+-.....+...... .....+...+.
T Consensus 247 EADrMldmGFe~qI~~Il~~i~------~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive-- 318 (519)
T KOG0331|consen 247 EADRMLDMGFEPQIRKILSQIP------RPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVE-- 318 (519)
T ss_pred cHHhhhccccHHHHHHHHHhcC------CCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhh--
Confidence 9999999 99999999997551 334489999999986 455555332222211111110 00011111111
Q ss_pred CCCCCchhhhhccHHHHHHHHhh--CCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHH
Q psy13788 902 PGKQYCPRMAKMNKPIYTAIKQH--SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSN 979 (1034)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 979 (1034)
.+. .......+...+... ....++||||+|++.|.++++.+...
T Consensus 319 ----~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~----------------------------- 364 (519)
T KOG0331|consen 319 ----VCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK----------------------------- 364 (519)
T ss_pred ----hcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc-----------------------------
Confidence 111 111222233334333 35669999999999999998877542
Q ss_pred HHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 980 LKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 980 l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++++..+||+.++.+|+.+++ . |++|+..||||||+++||+ |+.
T Consensus 365 -----~~~a~~iHGd~sQ~eR~~~L~--~--FreG~~~vLVATdVAaRGL-Di~ 408 (519)
T KOG0331|consen 365 -----GWPAVAIHGDKSQSERDWVLK--G--FREGKSPVLVATDVAARGL-DVP 408 (519)
T ss_pred -----CcceeeecccccHHHHHHHHH--h--cccCCcceEEEcccccccC-CCc
Confidence 133788999999999999988 7 9999999999999999999 985
No 20
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=347.92 Aligned_cols=290 Identities=24% Similarity=0.281 Sum_probs=235.1
Q ss_pred cCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 696 FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC------PEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 696 ~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~------~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
|.+|||.|.+|++.+. +|+|++++||||||||+++.+|++..+... .+-.+|||.|.|||.+++.+++.....
T Consensus 20 ~~~~t~~Q~~a~~~i~-~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~ 98 (814)
T COG1201 20 FTSLTPPQRYAIPEIH-SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLR 98 (814)
T ss_pred cCCCCHHHHHHHHHHh-CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 6679999999999998 999999999999999999999999888665 136799999999999999999985554
Q ss_pred hhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHH
Q psy13788 770 ARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRV 845 (1034)
Q Consensus 770 ~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl 845 (1034)
.+|+.+...+||++...+. .+.+||+|+|||.+..++...+.+..+.+++++|+||+|.+.+ .+|.++...+.|+
T Consensus 99 -~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL 177 (814)
T COG1201 99 -ELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERL 177 (814)
T ss_pred -HcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHH
Confidence 5999999999999876544 4578999999999988887656677899999999999999976 8999999999999
Q ss_pred HHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCce-eecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhh
Q psy13788 846 NFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGM-YNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQH 924 (1034)
Q Consensus 846 ~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~-~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 924 (1034)
+.+.. +.|.||+|||..++.++++|++.....+ +.-.+..++..+.+..................+.+++.++++
T Consensus 178 ~~l~~----~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~ 253 (814)
T COG1201 178 RELAG----DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKH 253 (814)
T ss_pred HhhCc----ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhc
Confidence 86642 8899999999999999999998775222 222233344444444332222222222333444556666654
Q ss_pred CCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhc
Q psy13788 925 SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQ 1004 (1034)
Q Consensus 925 ~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie 1004 (1034)
+.+|||+|||.+++.++..|.+... ..+..|||+++.+.|..+|
T Consensus 254 ---~ttLIF~NTR~~aE~l~~~L~~~~~---------------------------------~~i~~HHgSlSre~R~~vE 297 (814)
T COG1201 254 ---RTTLIFTNTRSGAERLAFRLKKLGP---------------------------------DIIEVHHGSLSRELRLEVE 297 (814)
T ss_pred ---CcEEEEEeChHHHHHHHHHHHHhcC---------------------------------CceeeecccccHHHHHHHH
Confidence 4899999999999999998876532 2389999999999999999
Q ss_pred ccchhHhhcCCceEEEechhhhhccCCC
Q psy13788 1005 MPKLAALSSKENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 1005 ~~~l~~f~~g~i~VLVaT~~l~~Gv~Df 1032 (1034)
+ . |++|+++++|||+.++-|| |.
T Consensus 298 ~--~--lk~G~lravV~TSSLELGI-Di 320 (814)
T COG1201 298 E--R--LKEGELKAVVATSSLELGI-DI 320 (814)
T ss_pred H--H--HhcCCceEEEEccchhhcc-cc
Confidence 9 8 9999999999999999999 96
No 21
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=9.3e-36 Score=352.68 Aligned_cols=294 Identities=17% Similarity=0.189 Sum_probs=211.3
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh--------CCCCeE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ--------CPEAKV 747 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~--------~~~~~~ 747 (1034)
++++.+..++... ||..|+|+|.+|++.++ .|+|++++||||||||++|++|++..+.. ..++++
T Consensus 127 ~l~~~l~~~L~~~------g~~~ptpiQ~~aip~il-~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~a 199 (518)
T PLN00206 127 GLPPKLLLNLETA------GYEFPTPIQMQAIPAAL-SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLA 199 (518)
T ss_pred CCCHHHHHHHHHc------CCCCCCHHHHHHHHHHh-cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceE
Confidence 4555555555443 56669999999999998 89999999999999999999999987642 246799
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccc---ccCCCcEEEECHhhHHHHHhccccccccCcccEEEE
Q psy13788 748 VYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQ---AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIII 824 (1034)
Q Consensus 748 lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lVi 824 (1034)
||++||++|+.|+.+.+. .+.+..++++..+.|+.....+ ...+++|+|+||+++..++.+ ....+.++++||+
T Consensus 200 LIL~PTreLa~Qi~~~~~-~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~--~~~~l~~v~~lVi 276 (518)
T PLN00206 200 MVLTPTRELCVQVEDQAK-VLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK--HDIELDNVSVLVL 276 (518)
T ss_pred EEEeCCHHHHHHHHHHHH-HHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc--CCccchheeEEEe
Confidence 999999999999877766 5555577787777776554332 235789999999999888773 4566899999999
Q ss_pred ecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCCccc-ccEEEEecC
Q psy13788 825 DEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSVRPV-PLEVHISGF 901 (1034)
Q Consensus 825 DEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~~-~l~~~~~~~ 901 (1034)
||||++.+ +|...+..++..+ ++.|++++|||+++. ..++.++.... ..+......++. .+.......
T Consensus 277 DEad~ml~~gf~~~i~~i~~~l--------~~~q~l~~SATl~~~v~~l~~~~~~~~-~~i~~~~~~~~~~~v~q~~~~~ 347 (518)
T PLN00206 277 DEVDCMLERGFRDQVMQIFQAL--------SQPQVLLFSATVSPEVEKFASSLAKDI-ILISIGNPNRPNKAVKQLAIWV 347 (518)
T ss_pred ecHHHHhhcchHHHHHHHHHhC--------CCCcEEEEEeeCCHHHHHHHHHhCCCC-EEEEeCCCCCCCcceeEEEEec
Confidence 99999987 6776666555432 357899999999873 55666654322 222222222221 112111111
Q ss_pred CCCCCchhhhhccHHHHHHHHhhC-CCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHH
Q psy13788 902 PGKQYCPRMAKMNKPIYTAIKQHS-PEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNL 980 (1034)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l 980 (1034)
.. ......+.+.+.... ..+++||||+++..|+.++..|....
T Consensus 348 ~~-------~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~----------------------------- 391 (518)
T PLN00206 348 ET-------KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT----------------------------- 391 (518)
T ss_pred cc-------hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc-----------------------------
Confidence 11 111223444444332 24689999999999998887764321
Q ss_pred HHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 981 KLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 981 ~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+..+..+||+|++++|..+++ . |++|+++|||||++++||| |+.
T Consensus 392 ----g~~~~~~Hg~~~~~eR~~il~--~--Fr~G~~~ILVaTdvl~rGi-Dip 435 (518)
T PLN00206 392 ----GLKALSIHGEKSMKERREVMK--S--FLVGEVPVIVATGVLGRGV-DLL 435 (518)
T ss_pred ----CcceEEeeCCCCHHHHHHHHH--H--HHCCCCCEEEEecHhhccC-Ccc
Confidence 123678999999999999988 7 9999999999999999999 985
No 22
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-35 Score=344.66 Aligned_cols=295 Identities=17% Similarity=0.200 Sum_probs=221.1
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh--CCCCe-EEEEcC
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ--CPEAK-VVYIAP 752 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~--~~~~~-~lvi~P 752 (1034)
++.+..+.++.+.+ |..|+|+|.+++|.++ .|+|+++.|+||||||.+|.+|+++.+.. ..... +||++|
T Consensus 35 ~l~~~ll~~l~~~g------f~~pt~IQ~~~IP~~l-~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 35 GLSPELLQALKDLG------FEEPTPIQLAAIPLIL-AGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred CCCHHHHHHHHHcC------CCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 56666677776654 5559999999999999 78999999999999999999999999873 32223 999999
Q ss_pred cHHHHHHHHHHHHHHhhhhc-CCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEeccc
Q psy13788 753 LKALVKERVADWKVKFEARL-KKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIH 828 (1034)
Q Consensus 753 t~~L~~q~~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH 828 (1034)
|||||.|+++.+. .++... ++++..+.|+.+...+. ..+++|+|+||+++.+++.+ ....+..+.++|+||||
T Consensus 108 TRELA~Qi~~~~~-~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~--~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 108 TRELAVQIAEELR-KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR--GKLDLSGVETLVLDEAD 184 (513)
T ss_pred CHHHHHHHHHHHH-HHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc--CCcchhhcCEEEeccHh
Confidence 9999999999887 566656 78999999998766544 23699999999999998884 46778999999999999
Q ss_pred ccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCC---cccccEEEEecCCC
Q psy13788 829 LLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSV---RPVPLEVHISGFPG 903 (1034)
Q Consensus 829 ~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~---r~~~l~~~~~~~~~ 903 (1034)
.|++ +|...++.++.. .+.+.|.+++|||+++. ..++.-.-..+ ......+.. ....++..+.....
T Consensus 185 rmLd~Gf~~~i~~I~~~-------~p~~~qtllfSAT~~~~i~~l~~~~l~~p-~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 185 RMLDMGFIDDIEKILKA-------LPPDRQTLLFSATMPDDIRELARRYLNDP-VEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred hhhcCCCHHHHHHHHHh-------CCcccEEEEEecCCCHHHHHHHHHHccCC-cEEEEccccccccccCceEEEEEeCC
Confidence 9998 898888888854 45589999999999883 22222221222 222222111 22233333322111
Q ss_pred CCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHH
Q psy13788 904 KQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLT 983 (1034)
Q Consensus 904 ~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~ 983 (1034)
. ......+...+.. ....++||||+|++.|..++..|...
T Consensus 257 ~------~~k~~~L~~ll~~-~~~~~~IVF~~tk~~~~~l~~~l~~~--------------------------------- 296 (513)
T COG0513 257 E------EEKLELLLKLLKD-EDEGRVIVFVRTKRLVEELAESLRKR--------------------------------- 296 (513)
T ss_pred H------HHHHHHHHHHHhc-CCCCeEEEEeCcHHHHHHHHHHHHHC---------------------------------
Confidence 1 1122233344433 33447999999999999988777653
Q ss_pred hhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 984 IAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 984 l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
++.+..+||+|++++|..+.+ . |++|+.+||||||+++||| |+.+
T Consensus 297 -g~~~~~lhG~l~q~~R~~~l~--~--F~~g~~~vLVaTDvaaRGi-Di~~ 341 (513)
T COG0513 297 -GFKVAALHGDLPQEERDRALE--K--FKDGELRVLVATDVAARGL-DIPD 341 (513)
T ss_pred -CCeEEEecCCCCHHHHHHHHH--H--HHcCCCCEEEEechhhccC-Cccc
Confidence 233889999999999988877 6 9999999999999999999 9864
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3e-35 Score=344.38 Aligned_cols=294 Identities=15% Similarity=0.200 Sum_probs=215.6
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC-------CCeEE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP-------EAKVV 748 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~-------~~~~l 748 (1034)
+|++....++...+ |..|+|+|.+|++.++ .++|++++||||||||++|++|+++.+.... ..++|
T Consensus 7 ~l~~~l~~~l~~~g------~~~pt~iQ~~ai~~il-~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aL 79 (456)
T PRK10590 7 GLSPDILRAVAEQG------YREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (456)
T ss_pred CCCHHHHHHHHHCC------CCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEE
Confidence 56666666666544 5559999999999998 7899999999999999999999999886532 24799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEe
Q psy13788 749 YIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIID 825 (1034)
Q Consensus 749 vi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViD 825 (1034)
|++||++|+.|+.+.+.. +.+..++++..+.|+.+.+.+. ...++|+|+||+++..+.. .....++++++||+|
T Consensus 80 il~PtreLa~Qi~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~--~~~~~l~~v~~lViD 156 (456)
T PRK10590 80 ILTPTRELAAQIGENVRD-YSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEH--QNAVKLDQVEILVLD 156 (456)
T ss_pred EEeCcHHHHHHHHHHHHH-HhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHH--cCCcccccceEEEee
Confidence 999999999999998875 4445788888889887755432 3478999999999987776 345568899999999
Q ss_pred cccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCCcccccEEEEecCCC
Q psy13788 826 EIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPG 903 (1034)
Q Consensus 826 EaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 903 (1034)
|||++.+ ++...++.++. ..+...|++++|||+++ ...+..++......+...........+...+...+
T Consensus 157 Eah~ll~~~~~~~i~~il~-------~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~- 228 (456)
T PRK10590 157 EADRMLDMGFIHDIRRVLA-------KLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD- 228 (456)
T ss_pred cHHHHhccccHHHHHHHHH-------hCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcC-
Confidence 9999987 56555555543 34567799999999987 45666655433322222111111122222222111
Q ss_pred CCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHH
Q psy13788 904 KQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLT 983 (1034)
Q Consensus 904 ~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~ 983 (1034)
. .....+...+.......++||||+++..|+.++..|...
T Consensus 229 -----~--~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~--------------------------------- 268 (456)
T PRK10590 229 -----K--KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD--------------------------------- 268 (456)
T ss_pred -----H--HHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC---------------------------------
Confidence 0 001122233333345578999999999999888877542
Q ss_pred hhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 984 IAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 984 l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+..+..+||+|++++|..+++ . |++|+++|||||+++++|| |+.
T Consensus 269 -g~~~~~lhg~~~~~~R~~~l~--~--F~~g~~~iLVaTdv~~rGi-Dip 312 (456)
T PRK10590 269 -GIRSAAIHGNKSQGARTRALA--D--FKSGDIRVLVATDIAARGL-DIE 312 (456)
T ss_pred -CCCEEEEECCCCHHHHHHHHH--H--HHcCCCcEEEEccHHhcCC-Ccc
Confidence 123688999999999999977 7 9999999999999999999 985
No 24
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.2e-35 Score=344.89 Aligned_cols=294 Identities=15% Similarity=0.209 Sum_probs=218.1
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC-CCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP-EAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~-~~~~lvi~Pt~ 754 (1034)
++++....++...+ |.+|+|+|.+|++.++ .|+|++++||||||||++|.+|+++.+.... ..+++|++||+
T Consensus 10 ~l~~~l~~~l~~~g------~~~~t~iQ~~ai~~~l-~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 10 PLPPALLANLNELG------YTEMTPIQAQSLPAIL-AGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CCCHHHHHHHHHCC------CCCCCHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 56666666666544 5559999999999998 7899999999999999999999999886532 46899999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccC
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~ 831 (1034)
+|+.|+.+.++.......+.++..++|+.+...+. ..+++|+|+||+++..++++ ....+.+++++|+||||++.
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~--~~~~l~~l~~lViDEad~~l 160 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK--GTLDLDALNTLVLDEADRML 160 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc--CCccHHHCCEEEEECHHHHh
Confidence 99999999887544433478899999987664432 35789999999999888873 45568899999999999998
Q ss_pred C-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchh
Q psy13788 832 E-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPR 909 (1034)
Q Consensus 832 ~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~ 909 (1034)
+ +|...++.++. ..+...|++++|||+++. ..+...+.... ..+..........++..+...+.
T Consensus 161 ~~g~~~~l~~i~~-------~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~-~~i~~~~~~~~~~i~~~~~~~~~------ 226 (460)
T PRK11776 161 DMGFQDAIDAIIR-------QAPARRQTLLFSATYPEGIAAISQRFQRDP-VEVKVESTHDLPAIEQRFYEVSP------ 226 (460)
T ss_pred CcCcHHHHHHHHH-------hCCcccEEEEEEecCcHHHHHHHHHhcCCC-EEEEECcCCCCCCeeEEEEEeCc------
Confidence 7 67777766664 345678999999999863 44444432222 22222222222223333322211
Q ss_pred hhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchh
Q psy13788 910 MAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIG 989 (1034)
Q Consensus 910 ~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~ 989 (1034)
......+...+. .....++||||++++.|+.++..|... +..+.
T Consensus 227 -~~k~~~l~~ll~-~~~~~~~lVF~~t~~~~~~l~~~L~~~----------------------------------~~~v~ 270 (460)
T PRK11776 227 -DERLPALQRLLL-HHQPESCVVFCNTKKECQEVADALNAQ----------------------------------GFSAL 270 (460)
T ss_pred -HHHHHHHHHHHH-hcCCCceEEEECCHHHHHHHHHHHHhC----------------------------------CCcEE
Confidence 111222333333 334568999999999999999888553 12378
Q ss_pred hhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 990 FHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 990 ~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
.+||+|++.+|+.+++ . |++|+++|||||+++++|+ |+.
T Consensus 271 ~~hg~~~~~eR~~~l~--~--F~~g~~~vLVaTdv~~rGi-Di~ 309 (460)
T PRK11776 271 ALHGDLEQRDRDQVLV--R--FANRSCSVLVATDVAARGL-DIK 309 (460)
T ss_pred EEeCCCCHHHHHHHHH--H--HHcCCCcEEEEeccccccc-chh
Confidence 9999999999999988 7 9999999999999999999 985
No 25
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.3e-34 Score=360.21 Aligned_cols=300 Identities=23% Similarity=0.326 Sum_probs=221.4
Q ss_pred ccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHHH
Q psy13788 695 KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-------PEAKVVYIAPLKALVKERVADWKVK 767 (1034)
Q Consensus 695 ~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-------~~~~~lvi~Pt~~L~~q~~~~~~~~ 767 (1034)
+|..|+|+|.+|++.++ +|+|++++||||||||++|.+|++..+... ++.++|||+|+++|+.|+++++...
T Consensus 29 ~~~~~tpiQ~~Ai~~il-~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~ 107 (876)
T PRK13767 29 KFGTFTPPQRYAIPLIH-EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEP 107 (876)
T ss_pred ccCCCCHHHHHHHHHHH-cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Confidence 35679999999999987 889999999999999999999999887642 2467999999999999998876643
Q ss_pred hh----------hhc-CCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-
Q psy13788 768 FE----------ARL-KKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832 (1034)
Q Consensus 768 ~~----------~~~-~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~- 832 (1034)
+. ... ++++..++|+.+...+. ...++|+|+||+++..++........+.++++||+||+|.+.+
T Consensus 108 l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~ 187 (876)
T PRK13767 108 LTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAEN 187 (876)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccC
Confidence 32 112 67889999998765442 3478999999999987776543344678999999999999986
Q ss_pred CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccC-----Cceeec-CCCCcccccEEEEecCCCCCC
Q psy13788 833 DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK-----QGMYNF-RPSVRPVPLEVHISGFPGKQY 906 (1034)
Q Consensus 833 ~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~-----~~~~~~-~~~~r~~~l~~~~~~~~~~~~ 906 (1034)
.+|..++..+.++..+. +.+.|++++|||+++.+++++|++... ..+... ....++..+.+... .... .
T Consensus 188 ~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p-~~~l-~ 262 (876)
T PRK13767 188 KRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISP-VDDL-I 262 (876)
T ss_pred ccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEecc-Cccc-c
Confidence 78999999999987653 457899999999999999999997531 111111 11122222222111 0000 0
Q ss_pred chhhhhccHHHHHHHHhh-CCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhh
Q psy13788 907 CPRMAKMNKPIYTAIKQH-SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIA 985 (1034)
Q Consensus 907 ~~~~~~~~~~~~~~l~~~-~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~ 985 (1034)
..........++..+... ..++++||||||++.|+.++..|.+.+... ..+
T Consensus 263 ~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~----------------------------~~~ 314 (876)
T PRK13767 263 HTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEE----------------------------YDE 314 (876)
T ss_pred ccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhh----------------------------ccc
Confidence 001111223333333322 245789999999999999999887643210 113
Q ss_pred hchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 986 FGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 986 ~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
.++.+|||+|++++|..+++ . |++|+++|||||+++++|| |+.
T Consensus 315 ~~i~~hHg~ls~~~R~~ve~--~--fk~G~i~vLVaTs~Le~GI-Dip 357 (876)
T PRK13767 315 DNIGAHHSSLSREVRLEVEE--K--LKRGELKVVVSSTSLELGI-DIG 357 (876)
T ss_pred cceeeeeCCCCHHHHHHHHH--H--HHcCCCeEEEECChHHhcC-CCC
Confidence 45899999999999999988 8 9999999999999999999 985
No 26
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.1e-35 Score=347.09 Aligned_cols=295 Identities=16% Similarity=0.184 Sum_probs=213.3
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC------CCCeEEE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC------PEAKVVY 749 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~------~~~~~lv 749 (1034)
++++..+.++... +|.+|+|+|.+++|.++ +|+|++++||||||||++|++|++..+... .++.+||
T Consensus 136 ~l~~~l~~~l~~~------g~~~pt~iQ~~aip~~l-~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LI 208 (545)
T PTZ00110 136 SFPDYILKSLKNA------GFTEPTPIQVQGWPIAL-SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLV 208 (545)
T ss_pred CCCHHHHHHHHHC------CCCCCCHHHHHHHHHHh-cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 5555555555544 46669999999999998 899999999999999999999998876542 3578999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEec
Q psy13788 750 IAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDE 826 (1034)
Q Consensus 750 i~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDE 826 (1034)
|+||++||.|+.+.+. .|+...++++..+.|+.....+. ..+++|+|+||+++..++.. ....+.++++||+||
T Consensus 209 L~PTreLa~Qi~~~~~-~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~--~~~~l~~v~~lViDE 285 (545)
T PTZ00110 209 LAPTRELAEQIREQCN-KFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES--NVTNLRRVTYLVLDE 285 (545)
T ss_pred ECChHHHHHHHHHHHH-HHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc--CCCChhhCcEEEeeh
Confidence 9999999999888877 45555778888888877654332 35789999999999888773 455688999999999
Q ss_pred ccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCC--cccccEEEEecCC
Q psy13788 827 IHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSV--RPVPLEVHISGFP 902 (1034)
Q Consensus 827 aH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~--r~~~l~~~~~~~~ 902 (1034)
||++.+ +|.+.++.++.. ..+..|++++|||++. ...++.++-............. ....+...+....
T Consensus 286 Ad~mld~gf~~~i~~il~~-------~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~ 358 (545)
T PTZ00110 286 ADRMLDMGFEPQIRKIVSQ-------IRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE 358 (545)
T ss_pred HHhhhhcchHHHHHHHHHh-------CCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe
Confidence 999987 677777766643 3467899999999976 3455554432211111111100 0011111111111
Q ss_pred CCCCchhhhhccHHHHHHHHhhC-CCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHH
Q psy13788 903 GKQYCPRMAKMNKPIYTAIKQHS-PEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLK 981 (1034)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~ 981 (1034)
. ......+.+.+.... .+.++||||++++.|+.++..|...
T Consensus 359 ~-------~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~------------------------------- 400 (545)
T PTZ00110 359 E-------HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD------------------------------- 400 (545)
T ss_pred c-------hhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc-------------------------------
Confidence 0 111122333343332 5679999999999999998877532
Q ss_pred HHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 982 LTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 982 ~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++.+..+||++++++|+.+++ . |++|+++|||||+++++|| |+.
T Consensus 401 ---g~~~~~ihg~~~~~eR~~il~--~--F~~G~~~ILVaTdv~~rGI-Di~ 444 (545)
T PTZ00110 401 ---GWPALCIHGDKKQEERTWVLN--E--FKTGKSPIMIATDVASRGL-DVK 444 (545)
T ss_pred ---CCcEEEEECCCcHHHHHHHHH--H--HhcCCCcEEEEcchhhcCC-Ccc
Confidence 122678999999999999977 6 9999999999999999999 985
No 27
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.5e-34 Score=344.16 Aligned_cols=296 Identities=16% Similarity=0.210 Sum_probs=213.9
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC--------CCCeE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--------PEAKV 747 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~--------~~~~~ 747 (1034)
+|++.++.+|...+ |..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+... ...++
T Consensus 15 ~l~~~l~~~L~~~g------~~~ptpiQ~~~ip~~l-~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 15 DLHPALLAGLESAG------FTRCTPIQALTLPVAL-PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCCHHHHHHHHHCC------CCCCCHHHHHHHHHHh-CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 67777777776544 5559999999999998 899999999999999999999999887542 14789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEE
Q psy13788 748 VYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIII 824 (1034)
Q Consensus 748 lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lVi 824 (1034)
|||+||++|+.|+++.+.+ +....++++..++|+...+.+. ..+++|+|+||+++..++.+. ....+..+++||+
T Consensus 88 LIl~PTreLa~Qi~~~~~~-l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~-~~~~l~~v~~lVi 165 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVK-FGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH-KVVSLHACEICVL 165 (572)
T ss_pred EEEeCcHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc-cccchhheeeeEe
Confidence 9999999999999999874 5555889999999987765432 346899999999998777642 2345788999999
Q ss_pred ecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHH-HhHhcccCCceeecCCCCcccccEEEEecC
Q psy13788 825 DEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDL-ATWLNITKQGMYNFRPSVRPVPLEVHISGF 901 (1034)
Q Consensus 825 DEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l-~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~ 901 (1034)
||||++.+ +|...++.++.++.. ....|++++|||+++. ..+ ..++... ..+...........+...+...
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~-----~~~~q~ll~SATl~~~v~~l~~~~l~~p-~~i~v~~~~~~~~~i~q~~~~~ 239 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPE-----RGTRQTLLFSATLSHRVLELAYEHMNEP-EKLVVETETITAARVRQRIYFP 239 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhccc-----ccCceEEEEeCCccHHHHHHHHHHhcCC-cEEEeccccccccceeEEEEec
Confidence 99999987 677777666654421 1257899999999863 222 2333211 1111111111111222221110
Q ss_pred CCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHH
Q psy13788 902 PGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLK 981 (1034)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~ 981 (1034)
........+...+. ...+.++||||+|++.|+.++..|.+.
T Consensus 240 -------~~~~k~~~L~~ll~-~~~~~k~LVF~nt~~~ae~l~~~L~~~------------------------------- 280 (572)
T PRK04537 240 -------ADEEKQTLLLGLLS-RSEGARTMVFVNTKAFVERVARTLERH------------------------------- 280 (572)
T ss_pred -------CHHHHHHHHHHHHh-cccCCcEEEEeCCHHHHHHHHHHHHHc-------------------------------
Confidence 01111112223333 345679999999999999998877542
Q ss_pred HHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 982 LTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 982 ~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++.+..+||+|++.+|+.+++ . |++|+++|||||+++++|| |+.
T Consensus 281 ---g~~v~~lhg~l~~~eR~~il~--~--Fr~G~~~VLVaTdv~arGI-Dip 324 (572)
T PRK04537 281 ---GYRVGVLSGDVPQKKRESLLN--R--FQKGQLEILVATDVAARGL-HID 324 (572)
T ss_pred ---CCCEEEEeCCCCHHHHHHHHH--H--HHcCCCeEEEEehhhhcCC-Ccc
Confidence 123889999999999999988 7 9999999999999999999 985
No 28
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-34 Score=334.12 Aligned_cols=294 Identities=17% Similarity=0.201 Sum_probs=211.7
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC--------CCCeE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--------PEAKV 747 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~--------~~~~~ 747 (1034)
+|++..+.++... ||..|+|+|.+|+|.++ +|+|++++||||||||++|++|+++.+... .++++
T Consensus 14 ~l~~~l~~~l~~~------g~~~pt~iQ~~aip~il-~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 14 ALHPQVVEALEKK------GFHNCTPIQALALPLTL-AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHHHHHHHHHC------CCCCCCHHHHHHHHHHh-CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 6666666666554 56669999999999998 899999999999999999999999887542 24789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEE
Q psy13788 748 VYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIII 824 (1034)
Q Consensus 748 lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lVi 824 (1034)
||++||++||.|+++.+.. +....++++..+.|+.....+. ..+++|+|+||+++..++. .....+.+++++|+
T Consensus 87 lil~PtreLa~Qi~~~~~~-l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~--~~~~~l~~v~~lVi 163 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEP-LAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK--QNHINLGAIQVVVL 163 (423)
T ss_pred EEECCcHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHH--cCCcccccccEEEE
Confidence 9999999999999888874 4555789999998876544322 3468999999999988876 34566889999999
Q ss_pred ecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHH-hHhcccCCceeecCCCCc-ccccEEEEec
Q psy13788 825 DEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLA-TWLNITKQGMYNFRPSVR-PVPLEVHISG 900 (1034)
Q Consensus 825 DEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~-~~l~~~~~~~~~~~~~~r-~~~l~~~~~~ 900 (1034)
||||++.+ ++...++.++..+. .....+.+++|||++.. ..+. .++. ........+... ...+.....
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~-----~~~~~~~~l~SAT~~~~~~~~~~~~~~--~p~~i~v~~~~~~~~~i~~~~~- 235 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMP-----PANQRLNMLFSATLSYRVRELAFEHMN--NPEYVEVEPEQKTGHRIKEELF- 235 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCC-----CccceeEEEEeccCCHHHHHHHHHHCC--CCEEEEEcCCCcCCCceeEEEE-
Confidence 99999987 67777666654331 11345678999999863 2222 2332 222222222211 111211111
Q ss_pred CCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHH
Q psy13788 901 FPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNL 980 (1034)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l 980 (1034)
..........+...+.. ....++||||++++.|+.++..|...
T Consensus 236 ------~~~~~~k~~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~------------------------------ 278 (423)
T PRK04837 236 ------YPSNEEKMRLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLAAD------------------------------ 278 (423)
T ss_pred ------eCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHhC------------------------------
Confidence 01111111223333333 34568999999999999888877542
Q ss_pred HHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 981 KLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 981 ~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+..+..+||+|++++|..+++ . |++|+++|||||++++||| |+.
T Consensus 279 ----g~~v~~lhg~~~~~~R~~~l~--~--F~~g~~~vLVaTdv~~rGi-Dip 322 (423)
T PRK04837 279 ----GHRVGLLTGDVAQKKRLRILE--E--FTRGDLDILVATDVAARGL-HIP 322 (423)
T ss_pred ----CCcEEEecCCCChhHHHHHHH--H--HHcCCCcEEEEechhhcCC-Ccc
Confidence 223789999999999999877 6 9999999999999999999 985
No 29
>KOG0338|consensus
Probab=100.00 E-value=2.7e-35 Score=315.97 Aligned_cols=298 Identities=17% Similarity=0.200 Sum_probs=221.1
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC----CCeEEEEc
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP----EAKVVYIA 751 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~----~~~~lvi~ 751 (1034)
+|+-.++.++...||.. |+|+|.++||..+ -|+|++.||.||||||.+|.+|++..+.-.| ..++||++
T Consensus 187 NLSRPlLka~~~lGy~~------PTpIQ~a~IPval-lgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 187 NLSRPLLKACSTLGYKK------PTPIQVATIPVAL-LGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred ccchHHHHHHHhcCCCC------CCchhhhcccHHh-hcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 66666777777666554 9999999999877 7999999999999999999999998886544 47999999
Q ss_pred CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEeccc
Q psy13788 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIH 828 (1034)
Q Consensus 752 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH 828 (1034)
|||+|+.|.+...+ .+.....+.++.+.|+.+...+. ...+||+|+||+++..++++ .....+.++..+|+||||
T Consensus 260 PTRELaiQv~sV~~-qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrN-s~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 260 PTRELAIQVHSVTK-QLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRN-SPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred ccHHHHHHHHHHHH-HHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhcc-CCCccccceeEEEechHH
Confidence 99999999776655 67777889999999998766554 45899999999999888886 344568999999999999
Q ss_pred ccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCC
Q psy13788 829 LLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQY 906 (1034)
Q Consensus 829 ~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 906 (1034)
+|++ +|...+..++ ..++.+.|.++||||+.. .++++..--..+..++.-.+...+..+...+...-
T Consensus 338 RMLeegFademnEii-------~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR---- 406 (691)
T KOG0338|consen 338 RMLEEGFADEMNEII-------RLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIR---- 406 (691)
T ss_pred HHHHHHHHHHHHHHH-------HhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheec----
Confidence 9988 7887777776 457888999999999976 45665532222333443333333333332222110
Q ss_pred chhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhh
Q psy13788 907 CPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAF 986 (1034)
Q Consensus 907 ~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~ 986 (1034)
+........+...+...-....++||+.|+++|.++---| -+++-
T Consensus 407 -~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~Ill----------------------------------GLlgl 451 (691)
T KOG0338|consen 407 -PKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILL----------------------------------GLLGL 451 (691)
T ss_pred -cccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHH----------------------------------HHhhc
Confidence 0011112222222222223568999999999888653222 23455
Q ss_pred chhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 987 GIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 987 gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
.++-+||.+++++|-...+ . |+++++.||||||+++||+ |+-
T Consensus 452 ~agElHGsLtQ~QRlesL~--k--Fk~~eidvLiaTDvAsRGL-DI~ 493 (691)
T KOG0338|consen 452 KAGELHGSLTQEQRLESLE--K--FKKEEIDVLIATDVASRGL-DIE 493 (691)
T ss_pred hhhhhcccccHHHHHHHHH--H--HHhccCCEEEEechhhccC-Ccc
Confidence 5899999999999977766 5 9999999999999999999 974
No 30
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.8e-34 Score=334.78 Aligned_cols=294 Identities=18% Similarity=0.219 Sum_probs=217.7
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-----CCCeEEEE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-----PEAKVVYI 750 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-----~~~~~lvi 750 (1034)
++++.+.+++...+| ..|+++|.++++.++ .++|++++||||+|||++|++|+++.+... +..++||+
T Consensus 7 ~l~~~l~~~l~~~g~------~~p~~iQ~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil 79 (434)
T PRK11192 7 ELDESLLEALQDKGY------TRPTAIQAEAIPPAL-DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILIL 79 (434)
T ss_pred CCCHHHHHHHHHCCC------CCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEE
Confidence 677777777766554 459999999999998 788999999999999999999999887642 24689999
Q ss_pred cCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecc
Q psy13788 751 APLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEI 827 (1034)
Q Consensus 751 ~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEa 827 (1034)
+||++|+.|+++.+.. +....++++..++|+.....+. ..+++|+|+||+++..++.. ....+.++++||+|||
T Consensus 80 ~Pt~eLa~Q~~~~~~~-l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~--~~~~~~~v~~lViDEa 156 (434)
T PRK11192 80 TPTRELAMQVADQARE-LAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE--ENFDCRAVETLILDEA 156 (434)
T ss_pred CCcHHHHHHHHHHHHH-HHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--CCcCcccCCEEEEECH
Confidence 9999999999888874 5555789999999987654432 34689999999999877763 3445788999999999
Q ss_pred cccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC--HHHHHhHhcccCCceeecCCCCcc-cccEEEEecCCC
Q psy13788 828 HLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN--AKDLATWLNITKQGMYNFRPSVRP-VPLEVHISGFPG 903 (1034)
Q Consensus 828 H~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~--~~~l~~~l~~~~~~~~~~~~~~r~-~~l~~~~~~~~~ 903 (1034)
|++.+ +++..++.+... .+...|++++|||++. ..++..++......+ ...+..+. ..+...+...
T Consensus 157 h~~l~~~~~~~~~~i~~~-------~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~i~~~~~~~-- 226 (434)
T PRK11192 157 DRMLDMGFAQDIETIAAE-------TRWRKQTLLFSATLEGDAVQDFAERLLNDPVEV-EAEPSRRERKKIHQWYYRA-- 226 (434)
T ss_pred HHHhCCCcHHHHHHHHHh-------CccccEEEEEEeecCHHHHHHHHHHHccCCEEE-EecCCcccccCceEEEEEe--
Confidence 99987 677777666543 3456789999999975 466777765333222 22222111 1121111110
Q ss_pred CCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHH
Q psy13788 904 KQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLT 983 (1034)
Q Consensus 904 ~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~ 983 (1034)
....... .++..+.......++||||++++.|+.++..|...
T Consensus 227 ----~~~~~k~-~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--------------------------------- 268 (434)
T PRK11192 227 ----DDLEHKT-ALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA--------------------------------- 268 (434)
T ss_pred ----CCHHHHH-HHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC---------------------------------
Confidence 0111111 22223333334678999999999999998877542
Q ss_pred hhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 984 IAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 984 l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+..+..+||+|++.+|..+++ . |++|+++|||||+++++|+ |+.
T Consensus 269 -~~~~~~l~g~~~~~~R~~~l~--~--f~~G~~~vLVaTd~~~~Gi-Dip 312 (434)
T PRK11192 269 -GINCCYLEGEMVQAKRNEAIK--R--LTDGRVNVLVATDVAARGI-DID 312 (434)
T ss_pred -CCCEEEecCCCCHHHHHHHHH--H--HhCCCCcEEEEccccccCc-cCC
Confidence 123789999999999999977 7 9999999999999999999 985
No 31
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2e-34 Score=313.17 Aligned_cols=285 Identities=24% Similarity=0.330 Sum_probs=230.3
Q ss_pred ccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 695 KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 695 ~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
|++++.|+|..++.+-+-.|+|.+++++|+||||++..++-+..+.. .+.+.||++|..|||+|.+++++.++++ +|+
T Consensus 213 G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-~g~KmlfLvPLVALANQKy~dF~~rYs~-Lgl 290 (830)
T COG1202 213 GIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-GGKKMLFLVPLVALANQKYEDFKERYSK-LGL 290 (830)
T ss_pred CcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-CCCeEEEEehhHHhhcchHHHHHHHhhc-ccc
Confidence 45569999999998755589999999999999999999987776665 3899999999999999999999999977 888
Q ss_pred eEEEEcCCCCcccc-------ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHH
Q psy13788 775 KVVELTGDVTPDIQ-------AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVN 846 (1034)
Q Consensus 775 ~v~~~~g~~~~~~~-------~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~ 846 (1034)
++..-.|....... ...++||||+|.|-++.+++.. ..+.+++.||+||+|.+.+ .+|+.+.-++.|++
T Consensus 291 kvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr 367 (830)
T COG1202 291 KVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLR 367 (830)
T ss_pred eEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---CcccccceEEeeeeeeccchhcccchhhHHHHHH
Confidence 88777774332211 2347899999999999999842 6789999999999999988 89999999999998
Q ss_pred HhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCC-CCCchhhhhccHHHHHHHHhhC
Q psy13788 847 FISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPG-KQYCPRMAKMNKPIYTAIKQHS 925 (1034)
Q Consensus 847 ~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 925 (1034)
++. +..|+|++|||+.|+.+++..++..- ..-+.||+|++.|+..... .........+.+.-+....+..
T Consensus 368 ~l~----~~AQ~i~LSATVgNp~elA~~l~a~l-----V~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg 438 (830)
T COG1202 368 YLF----PGAQFIYLSATVGNPEELAKKLGAKL-----VLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKG 438 (830)
T ss_pred HhC----CCCeEEEEEeecCChHHHHHHhCCee-----EeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccC
Confidence 774 47899999999999999999998653 2235699999988764321 1111112222222233333444
Q ss_pred CCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcc
Q psy13788 926 PEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQM 1005 (1034)
Q Consensus 926 ~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~ 1005 (1034)
-.+++|||++||+.|..+|..|.... ..+..||+||+..+|+.+|.
T Consensus 439 ~rGQtIVFT~SRrr~h~lA~~L~~kG----------------------------------~~a~pYHaGL~y~eRk~vE~ 484 (830)
T COG1202 439 YRGQTIVFTYSRRRCHELADALTGKG----------------------------------LKAAPYHAGLPYKERKSVER 484 (830)
T ss_pred cCCceEEEecchhhHHHHHHHhhcCC----------------------------------cccccccCCCcHHHHHHHHH
Confidence 56799999999999999998775431 12688999999999999999
Q ss_pred cchhHhhcCCceEEEechhhhhccCCC
Q psy13788 1006 PKLAALSSKENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 1006 ~~l~~f~~g~i~VLVaT~~l~~Gv~Df 1032 (1034)
. |.++++.++|+|.+++.|| ||
T Consensus 485 --~--F~~q~l~~VVTTAAL~AGV-DF 506 (830)
T COG1202 485 --A--FAAQELAAVVTTAALAAGV-DF 506 (830)
T ss_pred --H--HhcCCcceEeehhhhhcCC-CC
Confidence 8 9999999999999999999 99
No 32
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1e-33 Score=338.45 Aligned_cols=294 Identities=17% Similarity=0.163 Sum_probs=213.9
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~ 754 (1034)
+|++..+.++... ||.+|+|+|.++++.++ .++|+++.||||||||++|.+|++..+... .++++||++||+
T Consensus 12 ~L~~~ll~al~~~------G~~~ptpiQ~~ai~~ll-~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 12 GLKAPILEALNDL------GYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCCHHHHHHHHHC------CCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 5666667777654 45569999999999998 789999999999999999999999887543 457999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccC
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~ 831 (1034)
+|+.|+++.+........++.+..++|+...+.+. ..+++|+|+||+++..++. .....++++++||+||||.++
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~--r~~l~l~~l~~lVlDEAd~ml 162 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLK--RGTLDLSKLSGLVLDEADEML 162 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHH--cCCcchhhceEEEeccHHHHh
Confidence 99999999888655544478888888887654432 3478999999999987776 345568899999999999988
Q ss_pred C-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCC-cccccEEEEecCCCCCCch
Q psy13788 832 E-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSV-RPVPLEVHISGFPGKQYCP 908 (1034)
Q Consensus 832 ~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~-r~~~l~~~~~~~~~~~~~~ 908 (1034)
+ +|...++.++. ..+...|++++|||+|+. ..+...+......+ ...... ....+...+....
T Consensus 163 ~~gf~~di~~Il~-------~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i-~i~~~~~~~~~i~q~~~~v~------ 228 (629)
T PRK11634 163 RMGFIEDVETIMA-------QIPEGHQTALFSATMPEAIRRITRRFMKEPQEV-RIQSSVTTRPDISQSYWTVW------ 228 (629)
T ss_pred hcccHHHHHHHHH-------hCCCCCeEEEEEccCChhHHHHHHHHcCCCeEE-EccCccccCCceEEEEEEec------
Confidence 7 66666666653 346678999999999873 34443332222111 111111 1111111111100
Q ss_pred hhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhch
Q psy13788 909 RMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGI 988 (1034)
Q Consensus 909 ~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv 988 (1034)
.......+...+.. ....++||||+|+..|..++..|... ++.+
T Consensus 229 -~~~k~~~L~~~L~~-~~~~~~IVF~~tk~~a~~l~~~L~~~----------------------------------g~~~ 272 (629)
T PRK11634 229 -GMRKNEALVRFLEA-EDFDAAIIFVRTKNATLEVAEALERN----------------------------------GYNS 272 (629)
T ss_pred -hhhHHHHHHHHHHh-cCCCCEEEEeccHHHHHHHHHHHHhC----------------------------------CCCE
Confidence 00111223333333 34568999999999999988877542 2237
Q ss_pred hhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 989 GFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 989 ~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
..+||+|++.+|+.+++ . |++|+++|||||+++++|| |+.
T Consensus 273 ~~lhgd~~q~~R~~il~--~--Fr~G~~~ILVATdv~arGI-Dip 312 (629)
T PRK11634 273 AALNGDMNQALREQTLE--R--LKDGRLDILIATDVAARGL-DVE 312 (629)
T ss_pred EEeeCCCCHHHHHHHHH--H--HhCCCCCEEEEcchHhcCC-Ccc
Confidence 88999999999999977 7 9999999999999999999 985
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-33 Score=331.45 Aligned_cols=295 Identities=19% Similarity=0.273 Sum_probs=210.9
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC--------CCeE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP--------EAKV 747 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~--------~~~~ 747 (1034)
+|++.+..+|.+ +||.+|+|+|.++++.++ .|+|++++||||||||++|++|++..+.+.+ ..++
T Consensus 93 ~l~~~l~~~l~~------~g~~~~~~iQ~~ai~~~~-~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 93 NLAPELMHAIHD------LGFPYCTPIQAQVLGYTL-AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHHHHHHHHH------CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 566666666654 456669999999999998 8899999999999999999999999886643 4689
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc----cCCCcEEEECHhhHHHHHhccccccccCcccEEE
Q psy13788 748 VYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA----ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALII 823 (1034)
Q Consensus 748 lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~----~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lV 823 (1034)
|||+||++|+.|+++.+.. +.+..++++..++|+.+...+. ...++|+|+||+++..+..+ ....++++++||
T Consensus 166 Lil~PtreLa~Q~~~~~~~-l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~--~~~~l~~l~~lV 242 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAA-LTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR--GEVHLDMVEVMV 242 (475)
T ss_pred EEEeCcHHHHHHHHHHHHH-hhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc--CCcccccCceEE
Confidence 9999999999999998875 4445788999999876544321 24689999999999877764 355688999999
Q ss_pred EecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCC-cccccEEEEec
Q psy13788 824 IDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSV-RPVPLEVHISG 900 (1034)
Q Consensus 824 iDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~-r~~~l~~~~~~ 900 (1034)
+||||.+.+ .+.+.++.++..+. .....|++++|||+++ ...+...+.... ..+.+.+.. ....+..++..
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~-----~~~~~q~i~~SAT~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~ 316 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTP-----RKEERQTLLFSATFTDDVMNLAKQWTTDP-AIVEIEPENVASDTVEQHVYA 316 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCC-----CCCCceEEEEEeecCHHHHHHHHHhccCC-EEEEeccCcCCCCcccEEEEE
Confidence 999999976 56555555553221 1235689999999875 344444333222 222222211 11112222211
Q ss_pred CCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHH
Q psy13788 901 FPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNL 980 (1034)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l 980 (1034)
... ......+...+.. ....++||||++++.|+.++..|...
T Consensus 317 ~~~-------~~k~~~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~~------------------------------ 358 (475)
T PRK01297 317 VAG-------SDKYKLLYNLVTQ-NPWERVMVFANRKDEVRRIEERLVKD------------------------------ 358 (475)
T ss_pred ecc-------hhHHHHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHHc------------------------------
Confidence 111 1111223333333 34568999999999999888776432
Q ss_pred HHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 981 KLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 981 ~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+..+..+||+++.++|..+++ . |++|+++|||||+++++|| |+.
T Consensus 359 ----~~~~~~~~g~~~~~~R~~~~~--~--Fr~G~~~vLvaT~~l~~GI-Di~ 402 (475)
T PRK01297 359 ----GINAAQLSGDVPQHKRIKTLE--G--FREGKIRVLVATDVAGRGI-HID 402 (475)
T ss_pred ----CCCEEEEECCCCHHHHHHHHH--H--HhCCCCcEEEEccccccCC-ccc
Confidence 123678999999999998877 7 9999999999999999999 985
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.7e-33 Score=327.65 Aligned_cols=282 Identities=18% Similarity=0.279 Sum_probs=206.6
Q ss_pred cccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 690 YESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 690 ~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
+++.|||..|+|+|.++++.++ .++|++++||||||||++|++|++.. ++.+||++|+++|+.|++..+..
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l-~g~dvlv~apTGsGKTl~y~lp~l~~-----~~~~lVi~P~~~L~~dq~~~l~~--- 73 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVL-LGRDCFVVMPTGGGKSLCYQLPALCS-----DGITLVISPLISLMEDQVLQLKA--- 73 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHhHHHHHHHHHc-----CCcEEEEecHHHHHHHHHHHHHH---
Confidence 4567899999999999999998 78899999999999999999998753 67899999999999999888764
Q ss_pred hhcCCeEEEEcCCCCcccc-------ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHH
Q psy13788 770 ARLKKKVVELTGDVTPDIQ-------AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIV 842 (1034)
Q Consensus 770 ~~~~~~v~~~~g~~~~~~~-------~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il 842 (1034)
.|+.+..+.|+...... .....+|+++||+++....+.+.......+++++|+||||++.+ +|..++..+
T Consensus 74 --~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~-~g~~fr~~~ 150 (470)
T TIGR00614 74 --SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ-WGHDFRPDY 150 (470)
T ss_pred --cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc-cccccHHHH
Confidence 67888888887654421 12357999999999843221111111467899999999999975 333344434
Q ss_pred HHHHHhhhccCCCeEEEEEccCCCCH--HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHH
Q psy13788 843 SRVNFISSYTKRNVRLVGLSTALANA--KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTA 920 (1034)
Q Consensus 843 ~rl~~l~~~~~~~~~iv~lSATl~~~--~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1034)
.++..+.... ++.+++++|||+++. .++.++++.....++....... .+...+..... .....+...
T Consensus 151 ~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~--nl~~~v~~~~~--------~~~~~l~~~ 219 (470)
T TIGR00614 151 KALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRP--NLYYEVRRKTP--------KILEDLLRF 219 (470)
T ss_pred HHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCC--CcEEEEEeCCc--------cHHHHHHHH
Confidence 4443333333 467899999999873 6788888877655544332221 22222221110 112234455
Q ss_pred HHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHH
Q psy13788 921 IKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQS 1000 (1034)
Q Consensus 921 l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R 1000 (1034)
+.....++++||||+|+++|+.++..|... +..+..+||+|++++|
T Consensus 220 l~~~~~~~~~IIF~~s~~~~e~la~~L~~~----------------------------------g~~~~~~H~~l~~~eR 265 (470)
T TIGR00614 220 IRKEFKGKSGIIYCPSRKKSEQVTASLQNL----------------------------------GIAAGAYHAGLEISAR 265 (470)
T ss_pred HHHhcCCCceEEEECcHHHHHHHHHHHHhc----------------------------------CCCeeEeeCCCCHHHH
Confidence 544445667899999999999999887642 2237899999999999
Q ss_pred HHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 1001 SALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1001 ~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+.+++ . |++|+++|||||+++++|| |+.
T Consensus 266 ~~i~~--~--F~~g~~~vLVaT~~~~~GI-D~p 293 (470)
T TIGR00614 266 DDVHH--K--FQRDEIQVVVATVAFGMGI-NKP 293 (470)
T ss_pred HHHHH--H--HHcCCCcEEEEechhhccC-Ccc
Confidence 99988 7 9999999999999999999 985
No 35
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.2e-32 Score=345.67 Aligned_cols=302 Identities=22% Similarity=0.283 Sum_probs=211.3
Q ss_pred EEcCCCChhhHHHHHHHHHHHHhC-----------CCCeEEEEcCcHHHHHHHHHHHHHHhh-----------hhcCCeE
Q psy13788 719 LGAPTGSGKTIAAEITCFRVFKQC-----------PEAKVVYIAPLKALVKERVADWKVKFE-----------ARLKKKV 776 (1034)
Q Consensus 719 l~apTGsGKT~~~~l~il~~l~~~-----------~~~~~lvi~Pt~~L~~q~~~~~~~~~~-----------~~~~~~v 776 (1034)
|+||||||||++|++|++..+... ++.++|||+|++||+.|+.++++..+. ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999887542 257899999999999999998875332 1247899
Q ss_pred EEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhcc
Q psy13788 777 VELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYT 852 (1034)
Q Consensus 777 ~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~ 852 (1034)
..++||.+.+.+. .+.++|+|+|||++..++.+ +....++++++|||||+|.+.+ .+|..++..++|++.+ .
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l---~ 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL---L 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh---C
Confidence 9999999876643 34789999999999887764 3355789999999999999987 6899999999999865 3
Q ss_pred CCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCc------------hhhhhccHHHH-H
Q psy13788 853 KRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYC------------PRMAKMNKPIY-T 919 (1034)
Q Consensus 853 ~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~-~ 919 (1034)
+.+.|+|++|||++|.+++++|++......+...+..++.++.+.+...+..... .+...+...+. .
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 5678999999999999999999986533222224555666665543322211110 00111122222 2
Q ss_pred HHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHh---hhchhhhcCCCC
Q psy13788 920 AIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTI---AFGIGFHHAAAE 996 (1034)
Q Consensus 920 ~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l---~~gv~~~h~~~~ 996 (1034)
.+.....++++||||||++.|+.++..|.+.......... +............+....... ...+..|||+|+
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLS 312 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSP----SIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVS 312 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccc----cccchhhhhhhccccchhccccccceeeeeccccCC
Confidence 2222334678999999999999999999765432100000 000000000111111111111 123678999999
Q ss_pred HHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 997 AAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 997 ~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+++|..+|+ . |++|++++||||+++++|| |+-
T Consensus 313 keeR~~IE~--~--fK~G~LrvLVATssLELGI-DIg 344 (1490)
T PRK09751 313 KEQRAITEQ--A--LKSGELRCVVATSSLELGI-DMG 344 (1490)
T ss_pred HHHHHHHHH--H--HHhCCceEEEeCcHHHccC-Ccc
Confidence 999999999 8 9999999999999999999 974
No 36
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.2e-32 Score=319.90 Aligned_cols=295 Identities=14% Similarity=0.149 Sum_probs=205.1
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~ 754 (1034)
++++.+..++.. ++|..|+|+|.+|++.++ .++|++++||||||||++|++|+++.+... ++.++||++|++
T Consensus 34 ~l~~~~~~~l~~------~~~~~~~~~Q~~ai~~i~-~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 34 KLNEDLLRGIYS------YGFEKPSAIQQRGIKPIL-DGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred CCCHHHHHHHHH------cCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 455555555543 356779999999999998 788999999999999999999999887542 467899999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccc---ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccC
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQ---AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~ 831 (1034)
+|+.|+.+.+.. ++...+..+..+.|+...... ...+++|+|+||+++..++.+ ....+++++++|+||||++.
T Consensus 107 ~L~~Q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 107 ELAQQIQKVVLA-LGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK--RHLRVDDLKLFILDEADEML 183 (401)
T ss_pred HHHHHHHHHHHH-HhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh--CCcccccccEEEEecHHHHH
Confidence 999998887764 444467778778877653322 134679999999999777763 34568899999999999987
Q ss_pred C-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchh
Q psy13788 832 E-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPR 909 (1034)
Q Consensus 832 ~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~ 909 (1034)
+ +++..+..++ ...+.+.|++++|||+++. .++..........+...........+.......+.
T Consensus 184 ~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 250 (401)
T PTZ00424 184 SRGFKGQIYDVF-------KKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEK------ 250 (401)
T ss_pred hcchHHHHHHHH-------hhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecCh------
Confidence 6 5554444443 3345788999999999873 22222221111111111111111112222111111
Q ss_pred hhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchh
Q psy13788 910 MAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIG 989 (1034)
Q Consensus 910 ~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~ 989 (1034)
.......+...+ ......++||||+|++.|+.++..|.+. +.++.
T Consensus 251 ~~~~~~~l~~~~-~~~~~~~~ivF~~t~~~~~~l~~~l~~~----------------------------------~~~~~ 295 (401)
T PTZ00424 251 EEWKFDTLCDLY-ETLTITQAIIYCNTRRKVDYLTKKMHER----------------------------------DFTVS 295 (401)
T ss_pred HHHHHHHHHHHH-HhcCCCeEEEEecCcHHHHHHHHHHHHC----------------------------------CCcEE
Confidence 000111122222 2234568999999999999888776542 12378
Q ss_pred hhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 990 FHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 990 ~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
.+||+|++++|+.+++ . |++|+++|||||+++++|+ |+.
T Consensus 296 ~~h~~~~~~~R~~i~~--~--f~~g~~~vLvaT~~l~~Gi-Dip 334 (401)
T PTZ00424 296 CMHGDMDQKDRDLIMR--E--FRSGSTRVLITTDLLARGI-DVQ 334 (401)
T ss_pred EEeCCCCHHHHHHHHH--H--HHcCCCCEEEEcccccCCc-Ccc
Confidence 9999999999999988 7 9999999999999999999 984
No 37
>KOG0340|consensus
Probab=100.00 E-value=1.6e-33 Score=290.81 Aligned_cols=297 Identities=18% Similarity=0.209 Sum_probs=224.0
Q ss_pred ccccCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC-CCeEEEEc
Q psy13788 673 NLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP-EAKVVYIA 751 (1034)
Q Consensus 673 ~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~-~~~~lvi~ 751 (1034)
+.++|.|-++..+...++.. |+|+|..|+|.++ .|+|++.+|.||||||.+|.+|+++.+...| +..++|+.
T Consensus 10 ~~LGl~~Wlve~l~~l~i~~------pTpiQ~~cIpkIL-eGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 10 SILGLSPWLVEQLKALGIKK------PTPIQQACIPKIL-EGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred hhcCccHHHHHHHHHhcCCC------CCchHhhhhHHHh-cccccccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 34588888888888776655 9999999999999 8999999999999999999999999998876 56799999
Q ss_pred CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccc--cccccCcccEEEEec
Q psy13788 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQ--NRNYVQSVALIIIDE 826 (1034)
Q Consensus 752 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~--~~~~l~~l~~lViDE 826 (1034)
||++|+.|+.+++. .+++.+++++..+.|+.+.-.+. ...+|++|+||+++..++.+.. ....+++++++|+||
T Consensus 83 PTrELA~QiaEQF~-alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 83 PTRELALQIAEQFI-ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred chHHHHHHHHHHHH-HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 99999999999997 67888999999999987654333 4689999999999987776421 234468999999999
Q ss_pred ccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCc--eeecCC--CC-cccccEEEEec
Q psy13788 827 IHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQG--MYNFRP--SV-RPVPLEVHISG 900 (1034)
Q Consensus 827 aH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~--~~~~~~--~~-r~~~l~~~~~~ 900 (1034)
||.+.+ .|...++.+. ...+.+.|.++||||+.+ .+.+..+++... .|.+.. .. .+..+...+.
T Consensus 162 ADrvL~~~f~d~L~~i~-------e~lP~~RQtLlfSATitd--~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI- 231 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIE-------ECLPKPRQTLLFSATITD--TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYI- 231 (442)
T ss_pred hhhhhccchhhHHhhhh-------ccCCCccceEEEEeehhh--HHHHhhcCCcccccceEEeccCCCCchhhhhhhee-
Confidence 999988 6777666665 456777899999999965 344444443321 222211 11 1111111111
Q ss_pred CCCCCCchhhhhccHHHHHHHHhhCC--CCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCH
Q psy13788 901 FPGKQYCPRMAKMNKPIYTAIKQHSP--EKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDS 978 (1034)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 978 (1034)
.......+--++..+....+ ++.++||+|+...|+.++.-|...
T Consensus 232 ------~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l---------------------------- 277 (442)
T KOG0340|consen 232 ------LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL---------------------------- 277 (442)
T ss_pred ------ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh----------------------------
Confidence 11111112234455554443 778999999999999887766432
Q ss_pred HHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCC
Q psy13788 979 NLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 979 ~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Df 1032 (1034)
...++.+|+-|++++|-.... . |+++.++||||||+++||+ |+
T Consensus 278 ------e~r~~~lHs~m~Q~eR~~aLs--r--Frs~~~~iliaTDVAsRGL-DI 320 (442)
T KOG0340|consen 278 ------EVRVVSLHSQMPQKERLAALS--R--FRSNAARILIATDVASRGL-DI 320 (442)
T ss_pred ------ceeeeehhhcchHHHHHHHHH--H--HhhcCccEEEEechhhcCC-CC
Confidence 334789999999999988866 5 9999999999999999999 97
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.6e-32 Score=329.87 Aligned_cols=279 Identities=20% Similarity=0.247 Sum_probs=205.0
Q ss_pred cccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 690 YESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 690 ~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
....||+..|+|+|.++++.++ .|+|++++||||+|||+||++|++.. ++.+|||+|+++|+.+++..+..
T Consensus 452 lk~~FG~~sFRp~Q~eaI~aiL-~GrDVLVimPTGSGKSLcYQLPAL~~-----~GiTLVISPLiSLmqDQV~~L~~--- 522 (1195)
T PLN03137 452 NKKVFGNHSFRPNQREIINATM-SGYDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMNLLQ--- 522 (1195)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHHHHHHHHHHHc-----CCcEEEEeCHHHHHHHHHHHHHh---
Confidence 3567899999999999999998 89999999999999999999999864 57899999999999987777654
Q ss_pred hhcCCeEEEEcCCCCccccc---------cCCCcEEEECHhhHH---HHHhccccccccCcccEEEEecccccCC---CC
Q psy13788 770 ARLKKKVVELTGDVTPDIQA---------ISSASVIVTTPEKWD---GVSRSWQNRNYVQSVALIIIDEIHLLGE---DR 834 (1034)
Q Consensus 770 ~~~~~~v~~~~g~~~~~~~~---------~~~~~IiV~Tpe~l~---~l~~~~~~~~~l~~l~~lViDEaH~l~~---~~ 834 (1034)
.++++..+.|+.....+. ....+|+++|||++. .+.+..........+.+|||||||++.+ +|
T Consensus 523 --~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDF 600 (1195)
T PLN03137 523 --ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDF 600 (1195)
T ss_pred --CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccch
Confidence 578888888877644321 146899999999984 2333222222235589999999999975 35
Q ss_pred hhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC--HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhh
Q psy13788 835 GPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN--AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAK 912 (1034)
Q Consensus 835 ~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~--~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 912 (1034)
++.|..+ ..+.... +.++++++|||++. .+++.+.++.....++ ..+....++...+..- . ..
T Consensus 601 RpdYr~L----~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vf--r~Sf~RpNL~y~Vv~k--~------kk 665 (1195)
T PLN03137 601 RPDYQGL----GILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVF--RQSFNRPNLWYSVVPK--T------KK 665 (1195)
T ss_pred HHHHHHH----HHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe--ecccCccceEEEEecc--c------hh
Confidence 6666543 2222222 46789999999876 4678888876654333 2222222333333211 0 01
Q ss_pred ccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhc
Q psy13788 913 MNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHH 992 (1034)
Q Consensus 913 ~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h 992 (1034)
....+...+.....+.++||||+|+++|+.++..|... +..+..||
T Consensus 666 ~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~----------------------------------Gika~~YH 711 (1195)
T PLN03137 666 CLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF----------------------------------GHKAAFYH 711 (1195)
T ss_pred HHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC----------------------------------CCCeeeee
Confidence 11234444544444568999999999999999887642 22378999
Q ss_pred CCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 993 AAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 993 ~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
|||++++|..+++ . |.+|+++|||||++++||| |+.
T Consensus 712 AGLs~eeR~~vqe--~--F~~Gei~VLVATdAFGMGI-DkP 747 (1195)
T PLN03137 712 GSMDPAQRAFVQK--Q--WSKDEINIICATVAFGMGI-NKP 747 (1195)
T ss_pred CCCCHHHHHHHHH--H--HhcCCCcEEEEechhhcCC-Ccc
Confidence 9999999999988 7 9999999999999999999 985
No 39
>KOG0333|consensus
Probab=100.00 E-value=8.3e-33 Score=298.27 Aligned_cols=321 Identities=17% Similarity=0.235 Sum_probs=235.1
Q ss_pred ccccccccccccCCCCCCCCccccCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHH
Q psy13788 653 VQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 653 ~~~~vs~~~l~~p~~~~~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~ 732 (1034)
....+++++-.+|.+-.. .+-.++++..++.+...+|. .|+|+|.+|+|..+ +++|+|..|.||||||.+|+
T Consensus 229 edynis~kg~~lpnplrn-wEE~~~P~e~l~~I~~~~y~------eptpIqR~aipl~l-Q~rD~igvaETgsGktaaf~ 300 (673)
T KOG0333|consen 229 EDYNISIKGGRLPNPLRN-WEESGFPLELLSVIKKPGYK------EPTPIQRQAIPLGL-QNRDPIGVAETGSGKTAAFL 300 (673)
T ss_pred cceeeeecCCCCCccccC-hhhcCCCHHHHHHHHhcCCC------CCchHHHhhccchh-ccCCeeeEEeccCCccccch
Confidence 333444555555543322 22235666666666665554 49999999999877 88999999999999999999
Q ss_pred HHHHHHHHhCC----------CCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEEC
Q psy13788 733 ITCFRVFKQCP----------EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTT 799 (1034)
Q Consensus 733 l~il~~l~~~~----------~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~T 799 (1034)
+|++..+...| ++.+++++|||+|++|+..+-. +|++.+|+++..+.|+.+.+.+. ..+|+|+|+|
T Consensus 301 ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~-kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviat 379 (673)
T KOG0333|consen 301 IPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETN-KFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIAT 379 (673)
T ss_pred hhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHH-HhcccccceEEEEecccchhhhhhhhhccceeeecC
Confidence 99998876543 6899999999999999888877 67777999999999998877764 3589999999
Q ss_pred HhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhh----------------ccC--CCeEEEE
Q psy13788 800 PEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISS----------------YTK--RNVRLVG 860 (1034)
Q Consensus 800 pe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~----------------~~~--~~~~iv~ 860 (1034)
|+++...+. +....+.+..++|+||||.+.+ +|.+.+..++..|-.-.. ... .-.|.+.
T Consensus 380 PgrLid~Le--nr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~m 457 (673)
T KOG0333|consen 380 PGRLIDSLE--NRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVM 457 (673)
T ss_pred chHHHHHHH--HHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEE
Confidence 999977776 3455578899999999999999 999999999986531100 011 1268999
Q ss_pred EccCCCCH-HHHHh-HhcccCCceeecCCCCccccc-EEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecCh
Q psy13788 861 LSTALANA-KDLAT-WLNITKQGMYNFRPSVRPVPL-EVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSR 937 (1034)
Q Consensus 861 lSATl~~~-~~l~~-~l~~~~~~~~~~~~~~r~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~ 937 (1034)
||||++.. ..++. +|. . +-+.......++.+. +..+.-. . .....+.+.+.+.+. ..+|+|||+|++
T Consensus 458 ftatm~p~verlar~ylr-~-pv~vtig~~gk~~~rveQ~v~m~------~-ed~k~kkL~eil~~~-~~ppiIIFvN~k 527 (673)
T KOG0333|consen 458 FTATMPPAVERLARSYLR-R-PVVVTIGSAGKPTPRVEQKVEMV------S-EDEKRKKLIEILESN-FDPPIIIFVNTK 527 (673)
T ss_pred EecCCChHHHHHHHHHhh-C-CeEEEeccCCCCccchheEEEEe------c-chHHHHHHHHHHHhC-CCCCEEEEEech
Confidence 99999883 44444 332 2 222223333333332 2222111 1 112244555666554 578999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCce
Q psy13788 938 RQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQ 1017 (1034)
Q Consensus 938 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~ 1017 (1034)
+.|+.+|..|.+. ++.+..+||+-++++|+.++. . |+.|...
T Consensus 528 k~~d~lAk~LeK~----------------------------------g~~~~tlHg~k~qeQRe~aL~--~--fr~~t~d 569 (673)
T KOG0333|consen 528 KGADALAKILEKA----------------------------------GYKVTTLHGGKSQEQRENALA--D--FREGTGD 569 (673)
T ss_pred hhHHHHHHHHhhc----------------------------------cceEEEeeCCccHHHHHHHHH--H--HHhcCCC
Confidence 9999999877553 344889999999999999966 6 9999999
Q ss_pred EEEechhhhhccCCCC
Q psy13788 1018 NVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1018 VLVaT~~l~~Gv~Dfs 1033 (1034)
||||||+++||| |+-
T Consensus 570 IlVaTDvAgRGI-DIp 584 (673)
T KOG0333|consen 570 ILVATDVAGRGI-DIP 584 (673)
T ss_pred EEEEecccccCC-CCC
Confidence 999999999999 974
No 40
>KOG0345|consensus
Probab=100.00 E-value=1.2e-32 Score=294.03 Aligned_cols=298 Identities=16% Similarity=0.218 Sum_probs=217.2
Q ss_pred CCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC----CC--CeEEEE
Q psy13788 677 LQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC----PE--AKVVYI 750 (1034)
Q Consensus 677 l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~----~~--~~~lvi 750 (1034)
|.|....++...| |..+||+|..++|.++ +++|+++.|+||||||++|++|++..+.+. ++ ..+|||
T Consensus 13 L~~~l~~~l~~~G------F~~mTpVQa~tIPlll-~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalII 85 (567)
T KOG0345|consen 13 LSPWLLEALDESG------FEKMTPVQAATIPLLL-KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALII 85 (567)
T ss_pred ccHHHHHHHHhcC------CcccCHHHHhhhHHHh-cCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEe
Confidence 4455666666655 5559999999999998 899999999999999999999999998432 22 378999
Q ss_pred cCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc----cCCCcEEEECHhhHHHHHhccccccccCcccEEEEec
Q psy13788 751 APLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA----ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDE 826 (1034)
Q Consensus 751 ~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~----~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDE 826 (1034)
+|||||+.|+.+..........++++..+.|+.+.+... ..+++|+|+||+++..++++......++++.++|+||
T Consensus 86 sPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDE 165 (567)
T KOG0345|consen 86 SPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDE 165 (567)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecc
Confidence 999999999988888666665788999999986654432 3578999999999999998644445577999999999
Q ss_pred ccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCC---cccccEEEEecC
Q psy13788 827 IHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSV---RPVPLEVHISGF 901 (1034)
Q Consensus 827 aH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~---r~~~l~~~~~~~ 901 (1034)
||.+++ +|...++.|++ .+|+..|.=++|||.... +++.. .|...+--+...... .|-.+.....
T Consensus 166 ADrLldmgFe~~~n~ILs-------~LPKQRRTGLFSATq~~~v~dL~r-aGLRNpv~V~V~~k~~~~tPS~L~~~Y~-- 235 (567)
T KOG0345|consen 166 ADRLLDMGFEASVNTILS-------FLPKQRRTGLFSATQTQEVEDLAR-AGLRNPVRVSVKEKSKSATPSSLALEYL-- 235 (567)
T ss_pred hHhHhcccHHHHHHHHHH-------hcccccccccccchhhHHHHHHHH-hhccCceeeeecccccccCchhhcceee--
Confidence 999999 88888888885 456778888999998663 44333 233222111111111 1111211111
Q ss_pred CCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHH
Q psy13788 902 PGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLK 981 (1034)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~ 981 (1034)
..........++..+... ..+++|||.+|...++-.+..+...+.
T Consensus 236 -----v~~a~eK~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~----------------------------- 280 (567)
T KOG0345|consen 236 -----VCEADEKLSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLK----------------------------- 280 (567)
T ss_pred -----EecHHHHHHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhC-----------------------------
Confidence 111122223455556553 457999999999988876665544322
Q ss_pred HHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 982 LTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 982 ~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
+..+..+||.|.+..|..+.. . |++..-.||+|||+++||+ |+..
T Consensus 281 ---~~~i~~iHGK~~q~~R~k~~~--~--F~~~~~~vl~~TDVaARGl-Dip~ 325 (567)
T KOG0345|consen 281 ---KREIFSIHGKMSQKARAKVLE--A--FRKLSNGVLFCTDVAARGL-DIPG 325 (567)
T ss_pred ---CCcEEEecchhcchhHHHHHH--H--HHhccCceEEeehhhhccC-CCCC
Confidence 223788999999999988755 5 9998889999999999999 9863
No 41
>KOG0328|consensus
Probab=100.00 E-value=4e-33 Score=278.64 Aligned_cols=282 Identities=13% Similarity=0.168 Sum_probs=209.7
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
|||+.|+.+|+.|++.++ .|+|++.+|..|+|||.+|.+.+++.+.-. +..+++++.|||+|+.|+-+.+. .++..+
T Consensus 45 yGfekPS~IQqrAi~~Il-kGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~-alg~~m 122 (400)
T KOG0328|consen 45 YGFEKPSAIQQRAIPQIL-KGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVIL-ALGDYM 122 (400)
T ss_pred hccCCchHHHhhhhhhhh-cccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHH-Hhcccc
Confidence 567779999999999999 899999999999999999988888776543 34789999999999999766665 678889
Q ss_pred CCeEEEEcCCCCcccc--c-cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHh
Q psy13788 773 KKKVVELTGDVTPDIQ--A-ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFI 848 (1034)
Q Consensus 773 ~~~v~~~~g~~~~~~~--~-~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l 848 (1034)
++++..+.|+.+.... . --+.+++.+||+++..+++ ......+.++++|+||||.|++ +|+.++-.+.
T Consensus 123 nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmik--r~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiy------ 194 (400)
T KOG0328|consen 123 NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIK--RRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIY------ 194 (400)
T ss_pred cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHH--hccccccceeEEEeccHHHHHHhhHHHHHHHHH------
Confidence 9999999988763322 2 2478999999999999988 4556678899999999999987 6776666655
Q ss_pred hhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCC
Q psy13788 849 SSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPE 927 (1034)
Q Consensus 849 ~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 927 (1034)
..+++.+|++++|||+|. ..++.+.+.-++..++.-.....-..+...+...+. +.+....+..+.....-
T Consensus 195 -r~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~-------EewKfdtLcdLYd~LtI 266 (400)
T KOG0328|consen 195 -RYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEK-------EEWKFDTLCDLYDTLTI 266 (400)
T ss_pred -HhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeech-------hhhhHhHHHHHhhhheh
Confidence 345789999999999976 344444444443333332211111112222222211 11121222222222234
Q ss_pred CCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccc
Q psy13788 928 KPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPK 1007 (1034)
Q Consensus 928 ~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~ 1007 (1034)
.+++|||||++.+..+.+.+.+. .+.|..+||+|++++|+.+.+
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~----------------------------------nftVssmHGDm~qkERd~im~-- 310 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREA----------------------------------NFTVSSMHGDMEQKERDKIMN-- 310 (400)
T ss_pred heEEEEecccchhhHHHHHHHhh----------------------------------CceeeeccCCcchhHHHHHHH--
Confidence 68999999999888777766553 234889999999999999988
Q ss_pred hhHhhcCCceEEEechhhhhccCCC
Q psy13788 1008 LAALSSKENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 1008 l~~f~~g~i~VLVaT~~l~~Gv~Df 1032 (1034)
. |++|+.+|||+||+.+||+ |.
T Consensus 311 d--FRsg~SrvLitTDVwaRGi-Dv 332 (400)
T KOG0328|consen 311 D--FRSGKSRVLITTDVWARGI-DV 332 (400)
T ss_pred H--hhcCCceEEEEechhhccC-Cc
Confidence 7 9999999999999999999 96
No 42
>KOG0342|consensus
Probab=100.00 E-value=8.6e-33 Score=297.59 Aligned_cols=300 Identities=17% Similarity=0.213 Sum_probs=226.8
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-----CCCeEEEE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-----PEAKVVYI 750 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-----~~~~~lvi 750 (1034)
.|++....++..++|+ ++|++|..+++.++ .|+|+++.|.||+|||++|++|+++.+... ++..++||
T Consensus 88 ~LS~~t~kAi~~~GF~------~MT~VQ~~ti~pll-~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 88 SLSPLTLKAIKEMGFE------TMTPVQQKTIPPLL-EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred ccCHHHHHHHHhcCcc------chhHHHHhhcCccC-CCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 5666667777766554 59999999999998 888999999999999999999999988653 46789999
Q ss_pred cCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecc
Q psy13788 751 APLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEI 827 (1034)
Q Consensus 751 ~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEa 827 (1034)
+|||+|+.|.+.+.++.+....++.+..+.|+....... ..+++|+|+||++|..++.+... ...++++++|+|||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~-f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG-FLFRNLKCLVLDEA 239 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc-chhhccceeEeecc
Confidence 999999999999999877664488999999987654322 35899999999999999986443 45678899999999
Q ss_pred cccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCC
Q psy13788 828 HLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQ 905 (1034)
Q Consensus 828 H~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~ 905 (1034)
|++++ +|...++.|+. ..+...|.+++|||.+. .++++.-.-......++......+... .+.++.+
T Consensus 240 DrlLd~GF~~di~~Ii~-------~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~Th----e~l~Qgy 308 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIK-------ILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETH----ERLEQGY 308 (543)
T ss_pred hhhhhcccHHHHHHHHH-------hccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchh----hcccceE
Confidence 99999 89998888884 45688999999999987 566665432222222222222221111 1111111
Q ss_pred CchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhh
Q psy13788 906 YCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIA 985 (1034)
Q Consensus 906 ~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~ 985 (1034)
...........++..++++....++||||+|...+...|.-|. ++ .
T Consensus 309 vv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~-~~---------------------------------d 354 (543)
T KOG0342|consen 309 VVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLN-YI---------------------------------D 354 (543)
T ss_pred EeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHh-hc---------------------------------C
Confidence 1111112234567888887776899999999998887775443 21 2
Q ss_pred hchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 986 FGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 986 ~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
..|..+||++++..|..+.. . |++.+.-||||||++|||+ ||=
T Consensus 355 lpv~eiHgk~~Q~kRT~~~~--~--F~kaesgIL~cTDVaARGl-D~P 397 (543)
T KOG0342|consen 355 LPVLEIHGKQKQNKRTSTFF--E--FCKAESGILVCTDVAARGL-DIP 397 (543)
T ss_pred CchhhhhcCCcccccchHHH--H--HhhcccceEEecchhhccC-CCC
Confidence 23889999999999988866 5 9999999999999999999 983
No 43
>KOG0348|consensus
Probab=100.00 E-value=4.1e-32 Score=293.29 Aligned_cols=328 Identities=17% Similarity=0.200 Sum_probs=222.7
Q ss_pred ccCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-------CCCeE
Q psy13788 675 LELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-------PEAKV 747 (1034)
Q Consensus 675 l~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-------~~~~~ 747 (1034)
++|+|.+.+.|. ..++++.||.+|.++||.++ +|+|++|.|+||||||++|++|+++.+... .|..+
T Consensus 141 LGL~~~lv~~L~-----~~m~i~~pTsVQkq~IP~lL-~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 141 LGLHPHLVSHLN-----TKMKISAPTSVQKQAIPVLL-EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cCCCHHHHHHHH-----HHhccCccchHhhcchhhhh-cCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 478887777665 35678889999999999999 799999999999999999999999998653 47899
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccc---ccCCCcEEEECHhhHHHHHhccccccccCcccEEEE
Q psy13788 748 VYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQ---AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIII 824 (1034)
Q Consensus 748 lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lVi 824 (1034)
|||+||||||.|+++.+.+.+....-+-.+.+.|+.....+ ...+++|+|+||+++.+++.+.. ...+.+++++|+
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~-~i~~s~LRwlVl 293 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTK-SIKFSRLRWLVL 293 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccc-hheeeeeeEEEe
Confidence 99999999999999999988877666666667776544332 24689999999999988887643 345678999999
Q ss_pred ecccccCC-CChhHHHHHHHHHHHhhhc------cCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecC-------CCC
Q psy13788 825 DEIHLLGE-DRGPVLEVIVSRVNFISSY------TKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFR-------PSV 889 (1034)
Q Consensus 825 DEaH~l~~-~~~~~~~~il~rl~~l~~~------~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~-------~~~ 889 (1034)
||+|.+.+ +|+..+..|+.-+..+... .+...+-+++|||+.+. ..++. +.++++-.+..+ |..
T Consensus 294 DEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~-~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 294 DEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLAD-LSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred cchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhh-ccccCceeeeccchhhhcCcch
Confidence 99999999 9999999999877543222 22346788999999762 33332 222222111110 000
Q ss_pred c-------------------ccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHH
Q psy13788 890 R-------------------PVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITI 950 (1034)
Q Consensus 890 r-------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~ 950 (1034)
. |..+..++.-.+.+ .+...+...+.... +.....++|||+++.+.++.=+..|...
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK---LRLV~Laa~L~~~~-k~~~~qk~iVF~S~~d~VeFHy~lf~~~ 448 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK---LRLVALAALLLNKV-KFEEKQKMIVFFSCSDSVEFHYSLFSEA 448 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCc---hhHHHHHHHHHHHh-hhhhhceeEEEEechhHHHHHHHHHHhh
Confidence 0 00111111111110 01111111112222 2234568999999999998777766655
Q ss_pred HhccCC-CCcccCCChHHHHHHHhhcCCHHHH-HHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhc
Q psy13788 951 LACETN-PKMWVHTSDAEMDNIVDNIKDSNLK-LTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANG 1028 (1034)
Q Consensus 951 ~~~~~~-~~~~~~~~~~~~~~~~~~i~d~~l~-~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~G 1028 (1034)
+..... +.. ...+.++. .++.-.+.-+||+|++++|..+.+ . |+..+-.||.|||+++||
T Consensus 449 l~~~~e~~s~--------------~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~--~--Fs~~~~~VLLcTDVAaRG 510 (708)
T KOG0348|consen 449 LLSHLEGSSG--------------APDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQ--E--FSHSRRAVLLCTDVAARG 510 (708)
T ss_pred hhcccccccC--------------CcccCCChhhhhcceEEEecCchhHHHHHHHHH--h--hccccceEEEehhhhhcc
Confidence 443100 000 00001111 112223677999999999999988 8 999888899999999999
Q ss_pred cCCCC
Q psy13788 1029 NFDFN 1033 (1034)
Q Consensus 1029 v~Dfs 1033 (1034)
+ ||-
T Consensus 511 L-DlP 514 (708)
T KOG0348|consen 511 L-DLP 514 (708)
T ss_pred C-CCC
Confidence 9 983
No 44
>KOG0343|consensus
Probab=99.98 E-value=3.6e-32 Score=294.53 Aligned_cols=296 Identities=17% Similarity=0.215 Sum_probs=228.8
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-----CCCeEEEE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-----PEAKVVYI 750 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-----~~~~~lvi 750 (1034)
+++.....+|.+..|.. ++.+|.++||..+ .|+|++..|.||||||++|++|+++.+.+. .|.-+|||
T Consensus 75 pls~~t~kgLke~~fv~------~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 75 PLSQKTLKGLKEAKFVK------MTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred CCchHHHHhHhhcCCcc------HHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 45555566677666544 9999999999998 899999999999999999999999988653 46889999
Q ss_pred cCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccc--ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEeccc
Q psy13788 751 APLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQ--AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIH 828 (1034)
Q Consensus 751 ~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH 828 (1034)
.|||+||.|++..+. +.++..++..+.+.|+...... ...+.+|+||||+++..++.. .......++.++|+||||
T Consensus 148 SPTRELA~QtFevL~-kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde-~~~f~t~~lQmLvLDEAD 225 (758)
T KOG0343|consen 148 SPTRELALQTFEVLN-KVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDE-NPNFSTSNLQMLVLDEAD 225 (758)
T ss_pred cchHHHHHHHHHHHH-HHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhh-cCCCCCCcceEEEeccHH
Confidence 999999999999987 5777788999999998765433 367899999999999877764 233446889999999999
Q ss_pred ccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecC---CCCcccccEEEEecCCC
Q psy13788 829 LLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFR---PSVRPVPLEVHISGFPG 903 (1034)
Q Consensus 829 ~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~---~~~r~~~l~~~~~~~~~ 903 (1034)
++++ +|...+..|++ .++...|.++||||... ..++++. ....+.++... ....|..+...+.
T Consensus 226 R~LDMGFk~tL~~Ii~-------~lP~~RQTLLFSATqt~svkdLaRL-sL~dP~~vsvhe~a~~atP~~L~Q~y~---- 293 (758)
T KOG0343|consen 226 RMLDMGFKKTLNAIIE-------NLPKKRQTLLFSATQTKSVKDLARL-SLKDPVYVSVHENAVAATPSNLQQSYV---- 293 (758)
T ss_pred HHHHHhHHHHHHHHHH-------hCChhheeeeeecccchhHHHHHHh-hcCCCcEEEEeccccccChhhhhheEE----
Confidence 9998 88888888884 55788999999999876 5677664 33333322222 1223333333322
Q ss_pred CCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHH
Q psy13788 904 KQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLT 983 (1034)
Q Consensus 904 ~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~ 983 (1034)
..........++..|+.+. ..++|||++|.+++..++..+...-+
T Consensus 294 ---~v~l~~Ki~~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrp------------------------------- 338 (758)
T KOG0343|consen 294 ---IVPLEDKIDMLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRP------------------------------- 338 (758)
T ss_pred ---EEehhhHHHHHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCC-------------------------------
Confidence 1223334456778888774 56899999999999998887765322
Q ss_pred hhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 984 IAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 984 l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+..+..+||+|++..|..+.. . |-..+--||+|||+++||+ ||-
T Consensus 339 -g~~l~~L~G~~~Q~~R~ev~~--~--F~~~~~~vLF~TDv~aRGL-DFp 382 (758)
T KOG0343|consen 339 -GIPLLALHGTMSQKKRIEVYK--K--FVRKRAVVLFCTDVAARGL-DFP 382 (758)
T ss_pred -CCceeeeccchhHHHHHHHHH--H--HHHhcceEEEeehhhhccC-CCc
Confidence 122678999999999998877 6 9998999999999999999 994
No 45
>KOG0335|consensus
Probab=99.98 E-value=7.4e-32 Score=296.52 Aligned_cols=322 Identities=15% Similarity=0.170 Sum_probs=226.4
Q ss_pred ccccccccccccCCCCCCCCccccCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHH
Q psy13788 653 VQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 653 ~~~~vs~~~l~~p~~~~~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~ 732 (1034)
...++.......|.....+. -.++...+...++..+ +..|+|+|+.+++.+. .|++++++||||||||.+|+
T Consensus 58 ~~i~v~~~G~~~p~~i~~f~-~~~l~~~l~~ni~~~~------~~~ptpvQk~sip~i~-~Grdl~acAqTGsGKT~aFL 129 (482)
T KOG0335|consen 58 NDIPVKVSGRDVPPHIPTFD-EAILGEALAGNIKRSG------YTKPTPVQKYSIPIIS-GGRDLMACAQTGSGKTAAFL 129 (482)
T ss_pred cceeeeccCCccCCCccccc-ccchhHHHhhcccccc------ccCCCcceeeccceee-cCCceEEEccCCCcchHHHH
Confidence 34444444444444333222 2234444444444444 4559999999999997 89999999999999999999
Q ss_pred HHHHHHHHhCC-----------CCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEE
Q psy13788 733 ITCFRVFKQCP-----------EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVT 798 (1034)
Q Consensus 733 l~il~~l~~~~-----------~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~ 798 (1034)
+|++..+.... .++++|++|||||+.|++++..+ |.-..+.++....|+.+...+. .++|||+|+
T Consensus 130 iPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k-~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlva 208 (482)
T KOG0335|consen 130 IPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARK-FSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVA 208 (482)
T ss_pred HHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHh-hcccccceeeeeeCCcchhhhhhhhccCccEEEe
Confidence 99998887642 38999999999999999999985 4444788888888885544332 468999999
Q ss_pred CHhhHHHHHhccccccccCcccEEEEecccccCC--CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHh
Q psy13788 799 TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE--DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWL 875 (1034)
Q Consensus 799 Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~--~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l 875 (1034)
||+++.+++. .....+++++++|+||||.|.+ +|++.++.++.+.... .....|.++||||.|.. ..++..+
T Consensus 209 TpGrL~d~~e--~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~---~~~~~qt~mFSAtfp~~iq~l~~~f 283 (482)
T KOG0335|consen 209 TPGRLKDLIE--RGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMP---PKNNRQTLLFSATFPKEIQRLAADF 283 (482)
T ss_pred cCchhhhhhh--cceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCC---CccceeEEEEeccCChhhhhhHHHH
Confidence 9999999888 5677889999999999999988 8999999999765422 23567899999999862 2232222
Q ss_pred cccCCcee-ecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhC---CC-----CCeEEEecChHHHHHHHHH
Q psy13788 876 NITKQGMY-NFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHS---PE-----KPVMIFVSSRRQTRLTAID 946 (1034)
Q Consensus 876 ~~~~~~~~-~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~-----~~~lVF~~s~~~~~~~a~~ 946 (1034)
-......+ +-.-......+...+..+... .....+++.+.... .. .+++|||.+++.|..++..
T Consensus 284 l~~~yi~laV~rvg~~~~ni~q~i~~V~~~-------~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~ 356 (482)
T KOG0335|consen 284 LKDNYIFLAVGRVGSTSENITQKILFVNEM-------EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAF 356 (482)
T ss_pred hhccceEEEEeeeccccccceeEeeeecch-------hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHH
Confidence 11110000 001111122233333222211 11223444444322 22 3799999999999988877
Q ss_pred HHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhh
Q psy13788 947 LITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSA 1026 (1034)
Q Consensus 947 L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~ 1026 (1034)
|... ++....+||..++.+|....+ + |++|++.|||||++++
T Consensus 357 l~~~----------------------------------~~~~~sIhg~~tq~er~~al~--~--Fr~g~~pvlVaT~Vaa 398 (482)
T KOG0335|consen 357 LSSN----------------------------------GYPAKSIHGDRTQIEREQALN--D--FRNGKAPVLVATNVAA 398 (482)
T ss_pred HhcC----------------------------------CCCceeecchhhhhHHHHHHH--H--hhcCCcceEEEehhhh
Confidence 6542 223567999999999999988 7 9999999999999999
Q ss_pred hccCCCCC
Q psy13788 1027 NGNFDFNR 1034 (1034)
Q Consensus 1027 ~Gv~Dfs~ 1034 (1034)
||+ |+++
T Consensus 399 RGl-Di~~ 405 (482)
T KOG0335|consen 399 RGL-DIPN 405 (482)
T ss_pred cCC-CCCC
Confidence 999 9973
No 46
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=4.6e-31 Score=319.23 Aligned_cols=278 Identities=18% Similarity=0.258 Sum_probs=204.5
Q ss_pred cccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 690 YESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 690 ~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
+++.|||.+|+|+|.++++.++ .|+|++++||||+|||+||++|++.. ++.++||+|+++|+.|++..++.
T Consensus 5 l~~~fg~~~fr~~Q~~~i~~il-~g~dvlv~~PTG~GKTl~y~lpal~~-----~g~~lVisPl~sL~~dq~~~l~~--- 75 (591)
T TIGR01389 5 LKRTFGYDDFRPGQEEIISHVL-DGRDVLVVMPTGGGKSLCYQVPALLL-----KGLTVVISPLISLMKDQVDQLRA--- 75 (591)
T ss_pred HHHhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHhHHHHHHHHHc-----CCcEEEEcCCHHHHHHHHHHHHH---
Confidence 4567999999999999999998 78899999999999999999998853 56899999999999999988875
Q ss_pred hhcCCeEEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHH
Q psy13788 770 ARLKKKVVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIV 842 (1034)
Q Consensus 770 ~~~~~~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il 842 (1034)
.|+.+..++++....... ....+|+++||+++.... +.......+++++|+||||++.+ +|..++...
T Consensus 76 --~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~--~~~~l~~~~l~~iViDEaH~i~~-~g~~frp~y 150 (591)
T TIGR01389 76 --AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDY--FLNMLQRIPIALVAVDEAHCVSQ-WGHDFRPEY 150 (591)
T ss_pred --cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChH--HHHHHhcCCCCEEEEeCCccccc-ccCccHHHH
Confidence 578888888876654321 246799999999984211 12233456899999999999974 333333333
Q ss_pred HHHHHhhhccCCCeEEEEEccCCCC--HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHH
Q psy13788 843 SRVNFISSYTKRNVRLVGLSTALAN--AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTA 920 (1034)
Q Consensus 843 ~rl~~l~~~~~~~~~iv~lSATl~~--~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1034)
.++..+....+ +.+++++|||.+. ..++..+++......+. .+..|+ .+...+... ......+.+.
T Consensus 151 ~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~-nl~~~v~~~---------~~~~~~l~~~ 218 (591)
T TIGR01389 151 QRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI-TSFDRP-NLRFSVVKK---------NNKQKFLLDY 218 (591)
T ss_pred HHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCC-CcEEEEEeC---------CCHHHHHHHH
Confidence 33333333333 3459999999876 36788899877655443 222222 233322211 1112334555
Q ss_pred HHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHH
Q psy13788 921 IKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQS 1000 (1034)
Q Consensus 921 l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R 1000 (1034)
+.... +.++||||+|++.|+.++..|... +..++.|||+|+.++|
T Consensus 219 l~~~~-~~~~IIf~~sr~~~e~la~~L~~~----------------------------------g~~~~~~H~~l~~~~R 263 (591)
T TIGR01389 219 LKKHR-GQSGIIYASSRKKVEELAERLESQ----------------------------------GISALAYHAGLSNKVR 263 (591)
T ss_pred HHhcC-CCCEEEEECcHHHHHHHHHHHHhC----------------------------------CCCEEEEECCCCHHHH
Confidence 55443 678999999999999999887542 1236889999999999
Q ss_pred HHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 1001 SALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1001 ~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+.+++ . |.+|+++|||||+++++|| |+.
T Consensus 264 ~~i~~--~--F~~g~~~vlVaT~a~~~GI-D~p 291 (591)
T TIGR01389 264 AENQE--D--FLYDDVKVMVATNAFGMGI-DKP 291 (591)
T ss_pred HHHHH--H--HHcCCCcEEEEechhhccC-cCC
Confidence 99988 7 9999999999999999999 975
No 47
>KOG0326|consensus
Probab=99.97 E-value=7.7e-32 Score=273.75 Aligned_cols=278 Identities=17% Similarity=0.223 Sum_probs=213.1
Q ss_pred ccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 695 KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 695 ~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
||+.|+|+|.+++|..+ +|+|++.-|..|+|||-+|.+|++..+... ..-++++++|||+||-|+....+ .+++.++
T Consensus 104 G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~-~lskh~~ 181 (459)
T KOG0326|consen 104 GFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCK-ELSKHLG 181 (459)
T ss_pred ccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHH-HHhcccC
Confidence 67779999999999988 999999999999999999999999988653 35789999999999999766554 7888899
Q ss_pred CeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhh
Q psy13788 774 KKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFIS 849 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~ 849 (1034)
+++...+|+.+..... ....+++|+||+++.++.. ++...+++..++|+||||.+++ +|++.++.++.
T Consensus 182 i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~--KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~------ 253 (459)
T KOG0326|consen 182 IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAK--KGVADLSDCVILVMDEADKLLSVDFQPIVEKLIS------ 253 (459)
T ss_pred eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHh--cccccchhceEEEechhhhhhchhhhhHHHHHHH------
Confidence 9999999998766544 3468999999999999888 5677789999999999999998 89998888874
Q ss_pred hccCCCeEEEEEccCCCC-HHHHHh-HhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCC
Q psy13788 850 SYTKRNVRLVGLSTALAN-AKDLAT-WLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPE 927 (1034)
Q Consensus 850 ~~~~~~~~iv~lSATl~~-~~~l~~-~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 927 (1034)
.+++..|++++|||+|. .+.+.. ++ .++..+|.-..-.+..+..++. ..........+.....+. .-
T Consensus 254 -~lP~~rQillySATFP~tVk~Fm~~~l--~kPy~INLM~eLtl~GvtQyYa-------fV~e~qKvhCLntLfskL-qI 322 (459)
T KOG0326|consen 254 -FLPKERQILLYSATFPLTVKGFMDRHL--KKPYEINLMEELTLKGVTQYYA-------FVEERQKVHCLNTLFSKL-QI 322 (459)
T ss_pred -hCCccceeeEEecccchhHHHHHHHhc--cCcceeehhhhhhhcchhhhee-------eechhhhhhhHHHHHHHh-cc
Confidence 56789999999999986 233332 22 2222222222111111111111 111111111122222222 34
Q ss_pred CCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccc
Q psy13788 928 KPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPK 1007 (1034)
Q Consensus 928 ~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~ 1007 (1034)
.+.||||||.+.++.+|+.+.+. ++.+-++|+.|.+++|..+..
T Consensus 323 NQsIIFCNS~~rVELLAkKITel----------------------------------GyscyyiHakM~Q~hRNrVFH-- 366 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITEL----------------------------------GYSCYYIHAKMAQEHRNRVFH-- 366 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhc----------------------------------cchhhHHHHHHHHhhhhhhhh--
Confidence 58999999999999999887653 455889999999999999977
Q ss_pred hhHhhcCCceEEEechhhhhccCCC
Q psy13788 1008 LAALSSKENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 1008 l~~f~~g~i~VLVaT~~l~~Gv~Df 1032 (1034)
. |++|..+.|||||.+.||| |.
T Consensus 367 d--Fr~G~crnLVctDL~TRGI-Di 388 (459)
T KOG0326|consen 367 D--FRNGKCRNLVCTDLFTRGI-DI 388 (459)
T ss_pred h--hhccccceeeehhhhhccc-cc
Confidence 6 9999999999999999999 96
No 48
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=1.2e-30 Score=314.15 Aligned_cols=275 Identities=17% Similarity=0.251 Sum_probs=200.1
Q ss_pred cccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHH
Q psy13788 688 PQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVK 767 (1034)
Q Consensus 688 ~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~ 767 (1034)
..+++.|||..|+|+|.++++.++ .|+|+++++|||+|||++|++|++.. .+.+||++|+++|+.|+++.++.
T Consensus 15 ~~l~~~fG~~~~r~~Q~~ai~~il-~g~dvlv~apTGsGKTl~y~lpal~~-----~g~tlVisPl~sL~~dqv~~l~~- 87 (607)
T PRK11057 15 QVLQETFGYQQFRPGQQEIIDAVL-SGRDCLVVMPTGGGKSLCYQIPALVL-----DGLTLVVSPLISLMKDQVDQLLA- 87 (607)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHc-----CCCEEEEecHHHHHHHHHHHHHH-
Confidence 345667899999999999999998 78999999999999999999999854 56899999999999999988764
Q ss_pred hhhhcCCeEEEEcCCCCccccc-------cCCCcEEEECHhhHH--HHHhccccccccCcccEEEEecccccCC---CCh
Q psy13788 768 FEARLKKKVVELTGDVTPDIQA-------ISSASVIVTTPEKWD--GVSRSWQNRNYVQSVALIIIDEIHLLGE---DRG 835 (1034)
Q Consensus 768 ~~~~~~~~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~--~l~~~~~~~~~l~~l~~lViDEaH~l~~---~~~ 835 (1034)
.|+.+..+.+........ ....+++++||+++. .+.. .....+++++|+||||++.+ +|.
T Consensus 88 ----~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~----~l~~~~l~~iVIDEaH~i~~~G~~fr 159 (607)
T PRK11057 88 ----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE----HLAHWNPALLAVDEAHCISQWGHDFR 159 (607)
T ss_pred ----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH----HHhhCCCCEEEEeCccccccccCccc
Confidence 567777777765543221 235789999999984 2222 22235789999999999975 355
Q ss_pred hHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH--HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhc
Q psy13788 836 PVLEVIVSRVNFISSYTKRNVRLVGLSTALANA--KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKM 913 (1034)
Q Consensus 836 ~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~--~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 913 (1034)
+.+..+ ..+.... ++.+++++|||+++. .++..+++.....++. ....++ .+...+.. . ...
T Consensus 160 ~~y~~L----~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~~r~-nl~~~v~~--~-------~~~ 223 (607)
T PRK11057 160 PEYAAL----GQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRP-NIRYTLVE--K-------FKP 223 (607)
T ss_pred HHHHHH----HHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCCCCC-cceeeeee--c-------cch
Confidence 555433 2232222 468899999999874 4677777765543332 111122 22211110 0 001
Q ss_pred cHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcC
Q psy13788 914 NKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHA 993 (1034)
Q Consensus 914 ~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~ 993 (1034)
...+...+.. ..++++||||+|+++|+.++..|... +..+..+||
T Consensus 224 ~~~l~~~l~~-~~~~~~IIFc~tr~~~e~la~~L~~~----------------------------------g~~v~~~Ha 268 (607)
T PRK11057 224 LDQLMRYVQE-QRGKSGIIYCNSRAKVEDTAARLQSR----------------------------------GISAAAYHA 268 (607)
T ss_pred HHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhC----------------------------------CCCEEEecC
Confidence 1223344433 35678999999999999999887643 123789999
Q ss_pred CCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 994 AAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 994 ~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+|++++|+.+++ . |++|+++|||||+++++|| |+.
T Consensus 269 ~l~~~~R~~i~~--~--F~~g~~~VLVaT~a~~~GI-Dip 303 (607)
T PRK11057 269 GLDNDVRADVQE--A--FQRDDLQIVVATVAFGMGI-NKP 303 (607)
T ss_pred CCCHHHHHHHHH--H--HHCCCCCEEEEechhhccC-CCC
Confidence 999999999988 7 9999999999999999999 985
No 49
>KOG0339|consensus
Probab=99.97 E-value=1.8e-30 Score=278.35 Aligned_cols=282 Identities=19% Similarity=0.232 Sum_probs=217.0
Q ss_pred cCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh------CCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 696 FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ------CPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 696 ~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~------~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
|+.|+|+|.+++|..+ .+++++-+|-||||||-+|+.|++.++.. ..++..||++||++|+.|++.+.+ +|+
T Consensus 243 y~kptpiq~qalptal-sgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaK-kf~ 320 (731)
T KOG0339|consen 243 YEKPTPIQCQALPTAL-SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAK-KFG 320 (731)
T ss_pred cccCCccccccccccc-ccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHH-Hhh
Confidence 5569999999999988 89999999999999999999999987754 357899999999999999888876 788
Q ss_pred hhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHH
Q psy13788 770 ARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRV 845 (1034)
Q Consensus 770 ~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl 845 (1034)
+..|+++..++|+.+...+. ..++.||||||+++..++. .....+.++.++|+|||+.|.+ +|.++++.|..
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vk--mKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~-- 396 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVK--MKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQ-- 396 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHH--hhcccceeeeEEEEechhhhhccccHHHHHHHHh--
Confidence 88999999999988876654 3589999999999988887 4556789999999999999998 88888888774
Q ss_pred HHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhh
Q psy13788 846 NFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQH 924 (1034)
Q Consensus 846 ~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 924 (1034)
+..++.|.++||||++. ...+++-+-.++.+++...-..-...++..+. .++........+...+...
T Consensus 397 -----hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~------V~~s~~~Kl~wl~~~L~~f 465 (731)
T KOG0339|consen 397 -----HIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVS------VCPSEEKKLNWLLRHLVEF 465 (731)
T ss_pred -----hcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheee------eccCcHHHHHHHHHHhhhh
Confidence 44578999999999976 23333332222222222111111112222221 1222233334455555556
Q ss_pred CCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhc
Q psy13788 925 SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQ 1004 (1034)
Q Consensus 925 ~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie 1004 (1034)
...+++|||+..+..++.++..|.-. ++.|..+||+|.+.+|..++
T Consensus 466 ~S~gkvlifVTKk~~~e~i~a~Lklk----------------------------------~~~v~llhgdkdqa~rn~~l 511 (731)
T KOG0339|consen 466 SSEGKVLIFVTKKADAEEIAANLKLK----------------------------------GFNVSLLHGDKDQAERNEVL 511 (731)
T ss_pred ccCCcEEEEEeccCCHHHHHHHhccc----------------------------------cceeeeecCchhhHHHHHHH
Confidence 66679999999999998887766321 34589999999999998886
Q ss_pred ccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 1005 MPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1005 ~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
. . |+++...|||+||+++||+ |+.
T Consensus 512 s--~--fKkk~~~VlvatDvaargl-dI~ 535 (731)
T KOG0339|consen 512 S--K--FKKKRKPVLVATDVAARGL-DIP 535 (731)
T ss_pred H--H--HhhcCCceEEEeeHhhcCC-Ccc
Confidence 6 6 9999999999999999999 974
No 50
>KOG0947|consensus
Probab=99.97 E-value=7.7e-30 Score=291.64 Aligned_cols=304 Identities=25% Similarity=0.377 Sum_probs=236.3
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
|+|+ +..+|++|+..+. .|..++|.|+|.+|||++|+.++.-.-. .+.|++|..|-+||-+|.+++++..|+.
T Consensus 294 ~pFe-lD~FQk~Ai~~le-rg~SVFVAAHTSAGKTvVAEYAialaq~--h~TR~iYTSPIKALSNQKfRDFk~tF~D--- 366 (1248)
T KOG0947|consen 294 YPFE-LDTFQKEAIYHLE-RGDSVFVAAHTSAGKTVVAEYAIALAQK--HMTRTIYTSPIKALSNQKFRDFKETFGD--- 366 (1248)
T ss_pred CCCC-ccHHHHHHHHHHH-cCCeEEEEecCCCCcchHHHHHHHHHHh--hccceEecchhhhhccchHHHHHHhccc---
Confidence 6676 9999999999886 8999999999999999999998764433 3789999999999999999999999887
Q ss_pred CeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhcc
Q psy13788 774 KKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYT 852 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~ 852 (1034)
++.++||..... .+..+|+|.|.|.+++. ++...++++.+||+||+|.+.+ .+|-.|+.++ -.+
T Consensus 367 --vgLlTGDvqinP----eAsCLIMTTEILRsMLY--rgadliRDvE~VIFDEVHYiND~eRGvVWEEVi-------IMl 431 (1248)
T KOG0947|consen 367 --VGLLTGDVQINP----EASCLIMTTEILRSMLY--RGADLIRDVEFVIFDEVHYINDVERGVVWEEVI-------IML 431 (1248)
T ss_pred --cceeecceeeCC----CcceEeehHHHHHHHHh--cccchhhccceEEEeeeeecccccccccceeee-------eec
Confidence 458999876653 68999999999988887 4666789999999999999999 8999999887 457
Q ss_pred CCCeEEEEEccCCCCHHHHHhHhcccC-CceeecCCCCcccccEEEEecCCCCC-------------Cchhhhh------
Q psy13788 853 KRNVRLVGLSTALANAKDLATWLNITK-QGMYNFRPSVRPVPLEVHISGFPGKQ-------------YCPRMAK------ 912 (1034)
Q Consensus 853 ~~~~~iv~lSATl~~~~~l~~~l~~~~-~~~~~~~~~~r~~~l~~~~~~~~~~~-------------~~~~~~~------ 912 (1034)
+..+++|+||||+||+.+++.|+|..+ ..++..+...||+|++..+..-.... +......
T Consensus 432 P~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak 511 (1248)
T KOG0947|consen 432 PRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAK 511 (1248)
T ss_pred cccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccc
Confidence 899999999999999999999999654 46777888899999997653210000 0000000
Q ss_pred -----------------------------------c-cH---HHHHHHHh--hCCCCCeEEEecChHHHHHHHHHHHHHH
Q psy13788 913 -----------------------------------M-NK---PIYTAIKQ--HSPEKPVMIFVSSRRQTRLTAIDLITIL 951 (1034)
Q Consensus 913 -----------------------------------~-~~---~~~~~l~~--~~~~~~~lVF~~s~~~~~~~a~~L~~~~ 951 (1034)
. +. .....+.. ...--|++|||-|++.|++.|+.|...-
T Consensus 512 ~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~n 591 (1248)
T KOG0947|consen 512 FVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLN 591 (1248)
T ss_pred ccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccC
Confidence 0 00 01111111 1234589999999999999999886542
Q ss_pred hccCCCCcccCCChHHHH----HHHhhcCC--H------HHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEE
Q psy13788 952 ACETNPKMWVHTSDAEMD----NIVDNIKD--S------NLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNV 1019 (1034)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~----~~~~~i~d--~------~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VL 1019 (1034)
-.+. ...+++. .....+++ + .++.++..|+++||||+-+--++.||. | |..|-++||
T Consensus 592 L~~~-------~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~--L--FqrGlVKVL 660 (1248)
T KOG0947|consen 592 LTDS-------KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVEL--L--FQRGLVKVL 660 (1248)
T ss_pred cccc-------hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHH--H--HhcCceEEE
Confidence 2211 1223333 33344443 2 467888999999999999999999999 9 999999999
Q ss_pred EechhhhhccC
Q psy13788 1020 INRSTSANGNF 1030 (1034)
Q Consensus 1020 VaT~~l~~Gv~ 1030 (1034)
+||.++++|||
T Consensus 661 FATETFAMGVN 671 (1248)
T KOG0947|consen 661 FATETFAMGVN 671 (1248)
T ss_pred eehhhhhhhcC
Confidence 99999999993
No 51
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.4e-29 Score=301.03 Aligned_cols=309 Identities=26% Similarity=0.381 Sum_probs=241.8
Q ss_pred cccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhh
Q psy13788 692 SLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771 (1034)
Q Consensus 692 ~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~ 771 (1034)
..|+|+ +.++|++++..+- .|.+++++||||+|||.++..++...+.. +.+++|..|.+||.+|.++++..+|++.
T Consensus 114 ~~~~F~-LD~fQ~~a~~~Le-r~esVlV~ApTssGKTvVaeyAi~~al~~--~qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 114 REYPFE-LDPFQQEAIAILE-RGESVLVCAPTSSGKTVVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred HhCCCC-cCHHHHHHHHHHh-CCCcEEEEccCCCCcchHHHHHHHHHHHc--CCceEeccchhhhhhhHHHHHHHHhhhh
Confidence 446777 9999999999885 89999999999999999999999988877 6679999999999999999999999863
Q ss_pred cCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhh
Q psy13788 772 LKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISS 850 (1034)
Q Consensus 772 ~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~ 850 (1034)
.-.++.++||.+.+. ++.++|+|.|.+.+++. .+...+..+..||+||+|.+.+ .+|..|+.++ -
T Consensus 190 -~~~vGL~TGDv~IN~----~A~clvMTTEILRnMly--rg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I-------i 255 (1041)
T COG4581 190 -ADMVGLMTGDVSINP----DAPCLVMTTEILRNMLY--RGSESLRDIEWVVFDEVHYIGDRERGVVWEEVI-------I 255 (1041)
T ss_pred -hhhccceecceeeCC----CCceEEeeHHHHHHHhc--cCcccccccceEEEEeeeeccccccchhHHHHH-------H
Confidence 345688999887764 78999999999988887 4567789999999999999999 8999999887 3
Q ss_pred ccCCCeEEEEEccCCCCHHHHHhHhcc-cCCceeecCCCCcccccEEEEecCCCC----CCch---------hhhhcc--
Q psy13788 851 YTKRNVRLVGLSTALANAKDLATWLNI-TKQGMYNFRPSVRPVPLEVHISGFPGK----QYCP---------RMAKMN-- 914 (1034)
Q Consensus 851 ~~~~~~~iv~lSATl~~~~~l~~~l~~-~~~~~~~~~~~~r~~~l~~~~~~~~~~----~~~~---------~~~~~~-- 914 (1034)
.++..+++|+||||+||+.+|+.|++. ....++....+.||+|++.++..-..- +... ......
T Consensus 256 ~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~ 335 (1041)
T COG4581 256 LLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCF 335 (1041)
T ss_pred hcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhcc
Confidence 567889999999999999999999984 455677788899999999876542110 0000 000000
Q ss_pred --------------------------------HHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccC
Q psy13788 915 --------------------------------KPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVH 962 (1034)
Q Consensus 915 --------------------------------~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~ 962 (1034)
.++...+.. .+.-|+|+||-|++.|+..+..+... ..+.+
T Consensus 336 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~l-------dl~~~ 407 (1041)
T COG4581 336 SEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTL-------DLVLT 407 (1041)
T ss_pred chhccccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhccc-------ccccC
Confidence 011111111 23468999999999999988877532 12233
Q ss_pred CChHH-----HHHHHhhcCC---------HHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhc
Q psy13788 963 TSDAE-----MDNIVDNIKD---------SNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANG 1028 (1034)
Q Consensus 963 ~~~~~-----~~~~~~~i~d---------~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~G 1028 (1034)
.+.+. ++.-+..+.+ ..+..+|..|+++||+||-+..|..+|. | |..|-++|++||.+++.|
T Consensus 408 ~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~--L--fq~GLvkvvFaTeT~s~G 483 (1041)
T COG4581 408 EEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEE--L--FQEGLVKVVFATETFAIG 483 (1041)
T ss_pred CcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHH--H--HhccceeEEeehhhhhhh
Confidence 34444 3333333432 2456778899999999999999999999 9 999999999999999999
Q ss_pred cC
Q psy13788 1029 NF 1030 (1034)
Q Consensus 1029 v~ 1030 (1034)
+|
T Consensus 484 iN 485 (1041)
T COG4581 484 IN 485 (1041)
T ss_pred cC
Confidence 83
No 52
>KOG0336|consensus
Probab=99.97 E-value=1.2e-30 Score=272.95 Aligned_cols=303 Identities=17% Similarity=0.204 Sum_probs=211.5
Q ss_pred CCCCCCCCccccCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh---
Q psy13788 665 PELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ--- 741 (1034)
Q Consensus 665 p~~~~~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~--- 741 (1034)
|.+...+.....-.|..+..+...+ |..|+|+|+||+|.++ +|.|++.+|.||+|||++|++|-+.++..
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~G------FqKPtPIqSQaWPI~L-QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~ 287 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTG------FQKPTPIQSQAWPILL-QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK 287 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhcc------CCCCCcchhcccceee-cCcceEEEEecCCCcCHHHhccceeeeeccch
Confidence 3333333333344445555555544 5559999999999998 89999999999999999999998766532
Q ss_pred ----CCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhcccccc
Q psy13788 742 ----CPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRN 814 (1034)
Q Consensus 742 ----~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~ 814 (1034)
.+++.+|++.||++|+.|+.....+ +.. -|.+..++.|+.....+. ..+.+|+++||++|..+.. .+..
T Consensus 288 ~~~qr~~p~~lvl~ptreLalqie~e~~k-ysy-ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~--~n~i 363 (629)
T KOG0336|consen 288 RREQRNGPGVLVLTPTRELALQIEGEVKK-YSY-NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQM--DNVI 363 (629)
T ss_pred hhhccCCCceEEEeccHHHHHHHHhHHhH-hhh-cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhh--cCee
Confidence 3578999999999999998776653 332 466666666655443332 4589999999999988876 5677
Q ss_pred ccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCC---
Q psy13788 815 YVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSV--- 889 (1034)
Q Consensus 815 ~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~--- 889 (1034)
.+..+.++|+||||.|++ +|.++++.++-.+ .++.|.++.|||-|. ...++...-..+.-+++-.-+.
T Consensus 364 ~l~siTYlVlDEADrMLDMgFEpqIrkilldi-------RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~ 436 (629)
T KOG0336|consen 364 NLASITYLVLDEADRMLDMGFEPQIRKILLDI-------RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAV 436 (629)
T ss_pred eeeeeEEEEecchhhhhcccccHHHHHHhhhc-------CCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeee
Confidence 889999999999999999 8999998887544 478899999999887 4555543322222222221111
Q ss_pred cccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHH
Q psy13788 890 RPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMD 969 (1034)
Q Consensus 890 r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~ 969 (1034)
..+.-.+ +. +-.......+...+...+...++||||.++..|. .|.+.+...
T Consensus 437 ~sVkQ~i-~v--------~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD----~LSSd~~l~--------------- 488 (629)
T KOG0336|consen 437 KSVKQNI-IV--------TTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMAD----HLSSDFCLK--------------- 488 (629)
T ss_pred eeeeeeE-Ee--------cccHHHHHHHHHHHHhcCCCceEEEEEechhhhh----hccchhhhc---------------
Confidence 1111111 11 1111112334445566677889999999987444 444332222
Q ss_pred HHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 970 NIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 970 ~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+.....+||+-.+.||+...+ . |++|+++||||||+++||+ |+.
T Consensus 489 ---------------gi~~q~lHG~r~Q~DrE~al~--~--~ksG~vrILvaTDlaSRGl-Dv~ 532 (629)
T KOG0336|consen 489 ---------------GISSQSLHGNREQSDREMALE--D--FKSGEVRILVATDLASRGL-DVP 532 (629)
T ss_pred ---------------ccchhhccCChhhhhHHHHHH--h--hhcCceEEEEEechhhcCC-Cch
Confidence 223567999999999987755 5 9999999999999999999 974
No 53
>KOG0341|consensus
Probab=99.97 E-value=2.1e-31 Score=276.57 Aligned_cols=341 Identities=15% Similarity=0.148 Sum_probs=231.8
Q ss_pred EEEEeecCCCCCCceEEEeeccc-cccccccccccccccccCCCCCCCCccccCCCCCCCccCccccccccccCCCChhH
Q psy13788 625 LIMTIPLSDPLPNQYLIRAMSDR-YLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQ 703 (1034)
Q Consensus 625 l~f~vpl~~p~p~~~~i~~~Sd~-wlg~e~~~~vs~~~l~~p~~~~~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~Q 703 (1034)
.+++-|+...+.|-.+++-+|.+ +--.-.+..+..+.-.+|++...+.++ .++...+..++.. |+.+|+|+|
T Consensus 125 i~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eM-KFP~~~L~~lk~K------GI~~PTpIQ 197 (610)
T KOG0341|consen 125 ITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEM-KFPKPLLRGLKKK------GIVHPTPIQ 197 (610)
T ss_pred CcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhc-cCCHHHHHHHHhc------CCCCCCcee
Confidence 45556666655554556666643 111112233333333344333333333 3333344444444 445599999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHH---------hCCCCeEEEEcCcHHHHHHHHHHHHHHhhhh---
Q psy13788 704 TQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFK---------QCPEAKVVYIAPLKALVKERVADWKVKFEAR--- 771 (1034)
Q Consensus 704 ~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~---------~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~--- 771 (1034)
.|-+|.++ +|+|.+..|-||||||++|.+|++.... +..++..|||||+|+|+.|++.-+...+...
T Consensus 198 vQGlPvvL-sGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~ 276 (610)
T KOG0341|consen 198 VQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEA 276 (610)
T ss_pred ecCcceEe-ecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998 9999999999999999999999864432 2458999999999999999988776544431
Q ss_pred --cCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHH
Q psy13788 772 --LKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRV 845 (1034)
Q Consensus 772 --~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl 845 (1034)
..+++..+.|+.+...+. ..+.+|+|+||+++.+++. +....+.-.+++++||||+|.+ +|...++.+++.+
T Consensus 277 g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~--KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~F 354 (610)
T KOG0341|consen 277 GYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLA--KKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFF 354 (610)
T ss_pred CChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHH--HhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHH
Confidence 235677888888766544 4689999999999988887 5566778889999999999999 8999988888655
Q ss_pred HHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchh---hhhccHHHHHHH
Q psy13788 846 NFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPR---MAKMNKPIYTAI 921 (1034)
Q Consensus 846 ~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~l 921 (1034)
+ ...|.++||||+|.. ..|+... -+.|+.+++...+-.+-+.... .....+.+|-.-
T Consensus 355 K-------~QRQTLLFSATMP~KIQ~FAkSA------------LVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLe 415 (610)
T KOG0341|consen 355 K-------GQRQTLLFSATMPKKIQNFAKSA------------LVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLE 415 (610)
T ss_pred h-------hhhheeeeeccccHHHHHHHHhh------------cccceEEecccccccchhHHHHHHHHHhhhhhhhHHH
Confidence 4 467899999999762 3333321 1234433333222211111110 111122222222
Q ss_pred HhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHH
Q psy13788 922 KQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSS 1001 (1034)
Q Consensus 922 ~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~ 1001 (1034)
......+|+||||..+.++..+..+|.-... .+..+|||-.+++|.
T Consensus 416 CLQKT~PpVLIFaEkK~DVD~IhEYLLlKGV----------------------------------EavaIHGGKDQedR~ 461 (610)
T KOG0341|consen 416 CLQKTSPPVLIFAEKKADVDDIHEYLLLKGV----------------------------------EAVAIHGGKDQEDRH 461 (610)
T ss_pred HhccCCCceEEEeccccChHHHHHHHHHccc----------------------------------eeEEeecCcchhHHH
Confidence 2234567999999999998877776643321 267899999999998
Q ss_pred HhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 1002 ALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1002 ~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
.... . |+.|+.+||||||+++.|+ ||-
T Consensus 462 ~ai~--a--fr~gkKDVLVATDVASKGL-DFp 488 (610)
T KOG0341|consen 462 YAIE--A--FRAGKKDVLVATDVASKGL-DFP 488 (610)
T ss_pred HHHH--H--HhcCCCceEEEecchhccC-CCc
Confidence 7766 5 9999999999999999999 994
No 54
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=4.6e-29 Score=304.62 Aligned_cols=303 Identities=17% Similarity=0.179 Sum_probs=228.6
Q ss_pred CCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhc-CCe
Q psy13788 697 SHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARL-KKK 775 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~-~~~ 775 (1034)
..|.++|.+|+..+. +|+|++|++|||||||.+|++|++..+.+.+..++|||.||+||+++|.+++.+...... ++.
T Consensus 69 ~~lY~HQ~~A~~~~~-~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~ 147 (851)
T COG1205 69 ERLYSHQVDALRLIR-EGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVT 147 (851)
T ss_pred ccccHHHHHHHHHHH-CCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcce
Confidence 348999999999997 899999999999999999999999999998889999999999999999999997666532 488
Q ss_pred EEEEcCCCCccccc---cCCCcEEEECHhhHHH-HHhccc-cccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhh
Q psy13788 776 VVELTGDVTPDIQA---ISSASVIVTTPEKWDG-VSRSWQ-NRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISS 850 (1034)
Q Consensus 776 v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~-l~~~~~-~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~ 850 (1034)
+..++|+.....+. ...++|+++||+++.. +++.+. ....+.++++||+||+|.+...+|..+..+++|++.+..
T Consensus 148 ~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~ 227 (851)
T COG1205 148 FGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLR 227 (851)
T ss_pred eeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHh
Confidence 99999999888763 5689999999999976 444322 233457799999999999998999999999999999988
Q ss_pred ccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhh--hhccHHHHHHH-HhhCCC
Q psy13788 851 YTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRM--AKMNKPIYTAI-KQHSPE 927 (1034)
Q Consensus 851 ~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~l-~~~~~~ 927 (1034)
..+.+.|+|+.|||+.|+.++++-+........ +..+..|-.....+...+........ .+.....-..+ .....+
T Consensus 228 ~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~ 306 (851)
T COG1205 228 RYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNG 306 (851)
T ss_pred ccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcC
Confidence 888899999999999998777766543332221 22222233333333322221111111 00001111111 122357
Q ss_pred CCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccc
Q psy13788 928 KPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPK 1007 (1034)
Q Consensus 928 ~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~ 1007 (1034)
-++|+|+.++++++.++......+...+ + -+...|..|+|+|...+|..++.
T Consensus 307 ~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~-------------------------~l~~~v~~~~~~~~~~er~~ie~-- 358 (851)
T COG1205 307 IQTLVFFRSRKQVELLYLSPRRRLVREG-G-------------------------KLLDAVSTYRAGLHREERRRIEA-- 358 (851)
T ss_pred ceEEEEEehhhhhhhhhhchhHHHhhcc-h-------------------------hhhhheeeccccCCHHHHHHHHH--
Confidence 7999999999999988755544433221 1 01233889999999999999988
Q ss_pred hhHhhcCCceEEEechhhhhccCCC
Q psy13788 1008 LAALSSKENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 1008 l~~f~~g~i~VLVaT~~l~~Gv~Df 1032 (1034)
. |+.|++.++++|.+++.|+ |+
T Consensus 359 ~--~~~g~~~~~~st~Alelgi-di 380 (851)
T COG1205 359 E--FKEGELLGVIATNALELGI-DI 380 (851)
T ss_pred H--HhcCCccEEecchhhhhce-ee
Confidence 7 9999999999999999999 97
No 55
>KOG0350|consensus
Probab=99.96 E-value=2.6e-29 Score=270.13 Aligned_cols=297 Identities=17% Similarity=0.221 Sum_probs=200.0
Q ss_pred ccCCCChhHHHHHHHHhc--------CCCcEEEEcCCCChhhHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHH
Q psy13788 695 KFSHFNPIQTQIFHCLYH--------TDNNVLLGAPTGSGKTIAAEITCFRVFKQC--PEAKVVYIAPLKALVKERVADW 764 (1034)
Q Consensus 695 ~~~~~~~~Q~~ai~~l~~--------~~~~vll~apTGsGKT~~~~l~il~~l~~~--~~~~~lvi~Pt~~L~~q~~~~~ 764 (1034)
+.+...|+|.+++|.++. .++|+.|.||||||||++|.+||++.+... +..++|||+|+++|+.|+++.+
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f 235 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTF 235 (620)
T ss_pred hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHH
Confidence 456689999999998853 357999999999999999999999999764 4579999999999999999998
Q ss_pred HHHhhhhcCCeEEEEcCCCCccccc--------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CCh
Q psy13788 765 KVKFEARLKKKVVELTGDVTPDIQA--------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRG 835 (1034)
Q Consensus 765 ~~~~~~~~~~~v~~~~g~~~~~~~~--------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~ 835 (1034)
.. +....|+.|+.+.|..+...+. ....||+|+||+++..++++ .....+++++++||||||+|++ .|.
T Consensus 236 ~~-~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~-~k~f~Lk~LrfLVIDEADRll~qsfQ 313 (620)
T KOG0350|consen 236 KR-LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNN-TKSFDLKHLRFLVIDEADRLLDQSFQ 313 (620)
T ss_pred HH-hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccC-CCCcchhhceEEEechHHHHHHHHHH
Confidence 74 5555899999999977654332 11359999999999999886 3455689999999999999987 454
Q ss_pred hHHHHHHHHHHHh---------h------------------hccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCC
Q psy13788 836 PVLEVIVSRVNFI---------S------------------SYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRP 887 (1034)
Q Consensus 836 ~~~~~il~rl~~l---------~------------------~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~ 887 (1034)
.++..++..++.. . ....++...+.+|||++. +..+.+. ....+.++....
T Consensus 314 ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l-~l~~Prl~~v~~ 392 (620)
T KOG0350|consen 314 EWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL-TLHIPRLFHVSK 392 (620)
T ss_pred HHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh-hcCCCceEEeec
Confidence 4444443322111 0 001122335667777765 3333332 222222211110
Q ss_pred CCcccccEEEEecCCCCCCchhhhhccH--HHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCCh
Q psy13788 888 SVRPVPLEVHISGFPGKQYCPRMAKMNK--PIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSD 965 (1034)
Q Consensus 888 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 965 (1034)
+.-....+-..-...++ ......+ .++..+.. ....++|+|++|...+.+++.-|.-.+...
T Consensus 393 ---~~~~ryslp~~l~~~~v-v~~~~~kpl~~~~lI~~-~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~----------- 456 (620)
T KOG0350|consen 393 ---PLIGRYSLPSSLSHRLV-VTEPKFKPLAVYALITS-NKLNRTLCFVNSVSSANRLAHVLKVEFCSD----------- 456 (620)
T ss_pred ---ccceeeecChhhhhcee-ecccccchHhHHHHHHH-hhcceEEEEecchHHHHHHHHHHHHHhccc-----------
Confidence 00000000000000000 1111112 23445544 356789999999999999988776333332
Q ss_pred HHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 966 AEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 966 ~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
...+..+.|+++.+.|....+ . |.+|+++||||||+++||+ |++.
T Consensus 457 -------------------~~~~s~~t~~l~~k~r~k~l~--~--f~~g~i~vLIcSD~laRGi-Dv~~ 501 (620)
T KOG0350|consen 457 -------------------NFKVSEFTGQLNGKRRYKMLE--K--FAKGDINVLICSDALARGI-DVND 501 (620)
T ss_pred -------------------cchhhhhhhhhhHHHHHHHHH--H--HhcCCceEEEehhhhhcCC-cccc
Confidence 223677999999999987766 5 9999999999999999999 9863
No 56
>KOG0948|consensus
Probab=99.96 E-value=1.3e-29 Score=282.90 Aligned_cols=309 Identities=27% Similarity=0.430 Sum_probs=238.6
Q ss_pred ccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 693 LYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 693 ~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
.|+|. +.|+|.+++.++- ++..++|+|.|.+|||.++..+|...++. +.|++|..|-+||-+|.++++...|++
T Consensus 125 ~YPF~-LDpFQ~~aI~Cid-r~eSVLVSAHTSAGKTVVAeYAIA~sLr~--kQRVIYTSPIKALSNQKYREl~~EF~D-- 198 (1041)
T KOG0948|consen 125 TYPFT-LDPFQSTAIKCID-RGESVLVSAHTSAGKTVVAEYAIAMSLRE--KQRVIYTSPIKALSNQKYRELLEEFKD-- 198 (1041)
T ss_pred CCCcc-cCchHhhhhhhhc-CCceEEEEeecCCCcchHHHHHHHHHHHh--cCeEEeeChhhhhcchhHHHHHHHhcc--
Confidence 46777 9999999999884 88999999999999999999999998887 789999999999999999999988875
Q ss_pred CCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhc
Q psy13788 773 KKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSY 851 (1034)
Q Consensus 773 ~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~ 851 (1034)
|+..+||.+.+. .+.-+|+|.|.|.+++. ++....+.+.+||+||+|.|-+ .+|-.|+..+ -.
T Consensus 199 ---VGLMTGDVTInP----~ASCLVMTTEILRsMLY--RGSEvmrEVaWVIFDEIHYMRDkERGVVWEETI-------Il 262 (1041)
T KOG0948|consen 199 ---VGLMTGDVTINP----DASCLVMTTEILRSMLY--RGSEVMREVAWVIFDEIHYMRDKERGVVWEETI-------IL 262 (1041)
T ss_pred ---cceeecceeeCC----CCceeeeHHHHHHHHHh--ccchHhheeeeEEeeeehhccccccceeeeeeE-------Ee
Confidence 788999987764 67889999999988887 5667789999999999999988 8999998655 34
Q ss_pred cCCCeEEEEEccCCCCHHHHHhHhc-ccCCceeecCCCCcccccEEEEecCCCC---------------CCchhhhhc--
Q psy13788 852 TKRNVRLVGLSTALANAKDLATWLN-ITKQGMYNFRPSVRPVPLEVHISGFPGK---------------QYCPRMAKM-- 913 (1034)
Q Consensus 852 ~~~~~~iv~lSATl~~~~~l~~~l~-~~~~~~~~~~~~~r~~~l~~~~~~~~~~---------------~~~~~~~~~-- 913 (1034)
++.++|+|+||||+||+..+++|+. +.+..++..-.++||.|+..++.+..+. .+...+..+
T Consensus 263 lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~ 342 (1041)
T KOG0948|consen 263 LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRK 342 (1041)
T ss_pred ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhc
Confidence 6889999999999999999999985 6666777788899999998775432111 000000000
Q ss_pred -------------------------cHHHHHHHHhh--CCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChH
Q psy13788 914 -------------------------NKPIYTAIKQH--SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDA 966 (1034)
Q Consensus 914 -------------------------~~~~~~~l~~~--~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 966 (1034)
...+++.++.. .+..|+|||+-|+++|+..|..+.+.--..+..+..+ .+
T Consensus 343 ~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V---~~ 419 (1041)
T KOG0948|consen 343 AGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELV---ET 419 (1041)
T ss_pred cCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHH---HH
Confidence 01233333321 2356999999999999999988865322111000000 00
Q ss_pred HHHHHHhhcCCH--------HHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccC
Q psy13788 967 EMDNIVDNIKDS--------NLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNF 1030 (1034)
Q Consensus 967 ~~~~~~~~i~d~--------~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~ 1030 (1034)
-.......+.++ ++..+|..|||+||+|+-+--++.||- | |..|-++||+||.+++.|+|
T Consensus 420 iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEI--L--FqEGLvKvLFATETFsiGLN 487 (1041)
T KOG0948|consen 420 IFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEI--L--FQEGLVKVLFATETFSIGLN 487 (1041)
T ss_pred HHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHH--H--HhccHHHHHHhhhhhhhccC
Confidence 011223334322 456677899999999999999999999 9 99999999999999999993
No 57
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=3.3e-28 Score=298.95 Aligned_cols=274 Identities=16% Similarity=0.219 Sum_probs=199.1
Q ss_pred ccccccccCCCChhHHHHHHHHhcC-----CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHH
Q psy13788 689 QYESLYKFSHFNPIQTQIFHCLYHT-----DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVAD 763 (1034)
Q Consensus 689 ~~~~~~~~~~~~~~Q~~ai~~l~~~-----~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~ 763 (1034)
.+.+.|+|+ |||.|.+|++.+++. +.|.+++||||||||.+|++|++..+.. +.+++|++||++||.|+++.
T Consensus 443 ~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--g~qvlvLvPT~~LA~Q~~~~ 519 (926)
T TIGR00580 443 EFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--GKQVAVLVPTTLLAQQHFET 519 (926)
T ss_pred HHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--CCeEEEEeCcHHHHHHHHHH
Confidence 456667886 999999999999742 3689999999999999999999988865 68999999999999999999
Q ss_pred HHHHhhhhcCCeEEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChh
Q psy13788 764 WKVKFEARLKKKVVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGP 836 (1034)
Q Consensus 764 ~~~~~~~~~~~~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~ 836 (1034)
+++.+.. .++++..++|..+...+. ...++|+|+||..+ . ....+++++++|+||+|+++.
T Consensus 520 f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~---~~v~f~~L~llVIDEahrfgv---- 587 (926)
T TIGR00580 520 FKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q---KDVKFKDLGLLIIDEEQRFGV---- 587 (926)
T ss_pred HHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h---CCCCcccCCEEEeecccccch----
Confidence 9988776 688899998876543221 13589999999532 2 234578999999999999642
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhH-hcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccH
Q psy13788 837 VLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATW-LNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNK 915 (1034)
Q Consensus 837 ~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~-l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 915 (1034)
.....+ .....++++++||||+.+ +.+... .+.....++...|..| .++...+..+. . .
T Consensus 588 ~~~~~L-------~~~~~~~~vL~~SATpip-rtl~~~l~g~~d~s~I~~~p~~R-~~V~t~v~~~~-----~------~ 647 (926)
T TIGR00580 588 KQKEKL-------KELRTSVDVLTLSATPIP-RTLHMSMSGIRDLSIIATPPEDR-LPVRTFVMEYD-----P------E 647 (926)
T ss_pred hHHHHH-------HhcCCCCCEEEEecCCCH-HHHHHHHhcCCCcEEEecCCCCc-cceEEEEEecC-----H------H
Confidence 222222 123457899999999643 333332 3433333443333332 34444433211 0 1
Q ss_pred HHHHHH-HhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCC
Q psy13788 916 PIYTAI-KQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAA 994 (1034)
Q Consensus 916 ~~~~~l-~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~ 994 (1034)
.+...+ .....+++++||||+++.++.+++.|.+... +..|+.+||+
T Consensus 648 ~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p--------------------------------~~~v~~lHG~ 695 (926)
T TIGR00580 648 LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVP--------------------------------EARIAIAHGQ 695 (926)
T ss_pred HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCC--------------------------------CCeEEEecCC
Confidence 111222 2233567999999999999998888765422 1238899999
Q ss_pred CCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 995 AEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 995 ~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
|++++|+.+++ . |++|+++|||||+++++|+ |+.+
T Consensus 696 m~~~eRe~im~--~--F~~Gk~~ILVaT~iie~GI-DIp~ 730 (926)
T TIGR00580 696 MTENELEEVML--E--FYKGEFQVLVCTTIIETGI-DIPN 730 (926)
T ss_pred CCHHHHHHHHH--H--HHcCCCCEEEECChhhccc-cccc
Confidence 99999999977 6 9999999999999999999 9853
No 58
>KOG0334|consensus
Probab=99.96 E-value=3.3e-29 Score=293.76 Aligned_cols=296 Identities=19% Similarity=0.224 Sum_probs=218.6
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh------CCCCeEEE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ------CPEAKVVY 749 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~------~~~~~~lv 749 (1034)
++.+..+..++..+| ..|+|+|.||+|+++ .|+++|.+|-||||||++|++|++++... ..++.++|
T Consensus 371 gl~~~il~tlkkl~y------~k~~~IQ~qAiP~Im-sGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li 443 (997)
T KOG0334|consen 371 GLSSKILETLKKLGY------EKPTPIQAQAIPAIM-SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALI 443 (997)
T ss_pred CchHHHHHHHHHhcC------CCCcchhhhhcchhc-cCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEE
Confidence 444444555554444 459999999999999 99999999999999999999999988754 34799999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHh-ccccccccCcccEEEEe
Q psy13788 750 IAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSR-SWQNRNYVQSVALIIID 825 (1034)
Q Consensus 750 i~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~-~~~~~~~l~~l~~lViD 825 (1034)
++||++|+.|+.+.+. .|...++++++..+|+.....+. .+++.|+||||++...++- +......+.++.++|+|
T Consensus 444 ~aPtrela~QI~r~~~-kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~d 522 (997)
T KOG0334|consen 444 LAPTRELAMQIHREVR-KFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLD 522 (997)
T ss_pred EcCCHHHHHHHHHHHH-HHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeec
Confidence 9999999999888777 55555999999999988766554 4579999999999855544 33344556677799999
Q ss_pred cccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCC--cccccEEEEecC
Q psy13788 826 EIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSV--RPVPLEVHISGF 901 (1034)
Q Consensus 826 EaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~--r~~~l~~~~~~~ 901 (1034)
|||.|.+ .|.|..-.|+..+ ++..|.+++|||++.. ..++.-.-.++..+....-+. ..+...+.+
T Consensus 523 eaDrmfdmgfePq~~~Ii~nl-------rpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V--- 592 (997)
T KOG0334|consen 523 EADRMFDMGFEPQITRILQNL-------RPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRV--- 592 (997)
T ss_pred hhhhhheeccCcccchHHhhc-------chhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEE---
Confidence 9999998 7888877777544 5778999999999874 444443222221111110000 011111111
Q ss_pred CCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHH
Q psy13788 902 PGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLK 981 (1034)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~ 981 (1034)
++........+.+.+.......++||||.+...|..+.++|.+.
T Consensus 593 -----~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a------------------------------- 636 (997)
T KOG0334|consen 593 -----CAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA------------------------------- 636 (997)
T ss_pred -----ecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc-------------------------------
Confidence 12122333455666666667889999999999999998888742
Q ss_pred HHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 982 LTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 982 ~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++.+..+||+.++.+|..++. . |++|.+.+||||+++++|+ |+.
T Consensus 637 ---g~~~~slHGgv~q~dR~sti~--d--fK~~~~~LLvaTsvvarGL-dv~ 680 (997)
T KOG0334|consen 637 ---GYNCDSLHGGVDQHDRSSTIE--D--FKNGVVNLLVATSVVARGL-DVK 680 (997)
T ss_pred ---CcchhhhcCCCchHHHHhHHH--H--HhccCceEEEehhhhhccc-ccc
Confidence 122556999999999987766 5 9999999999999999999 986
No 59
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.7e-28 Score=280.49 Aligned_cols=273 Identities=17% Similarity=0.237 Sum_probs=209.0
Q ss_pred cccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 690 YESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 690 ~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
+..+||+..|+|-|.++|..++ +++|+++.+|||+|||+||++|++-. .+-+|||+|..+|..++++.++.
T Consensus 9 L~~~fGy~~FR~gQ~evI~~~l-~g~d~lvvmPTGgGKSlCyQiPAll~-----~G~TLVVSPLiSLM~DQV~~l~~--- 79 (590)
T COG0514 9 LKQVFGYASFRPGQQEIIDALL-SGKDTLVVMPTGGGKSLCYQIPALLL-----EGLTLVVSPLISLMKDQVDQLEA--- 79 (590)
T ss_pred HHHHhCccccCCCHHHHHHHHH-cCCcEEEEccCCCCcchHhhhHHHhc-----CCCEEEECchHHHHHHHHHHHHH---
Confidence 5678899999999999999998 78999999999999999999999865 56999999999999999998876
Q ss_pred hhcCCeEEEEcCCCCccccc-------cCCCcEEEECHhhHH--HHHhccccccccCcccEEEEecccccCC---CChhH
Q psy13788 770 ARLKKKVVELTGDVTPDIQA-------ISSASVIVTTPEKWD--GVSRSWQNRNYVQSVALIIIDEIHLLGE---DRGPV 837 (1034)
Q Consensus 770 ~~~~~~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~--~l~~~~~~~~~l~~l~~lViDEaH~l~~---~~~~~ 837 (1034)
.|+.+..+.+..+.+.+. ....++++.+||++. .+.. ...-..+.+++||||||+.. +|+|.
T Consensus 80 --~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~----~L~~~~i~l~vIDEAHCiSqWGhdFRP~ 153 (590)
T COG0514 80 --AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE----LLKRLPISLVAIDEAHCISQWGHDFRPD 153 (590)
T ss_pred --cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH----HHHhCCCceEEechHHHHhhcCCccCHh
Confidence 788888888876654432 234799999999982 2222 11246789999999999975 57777
Q ss_pred HHHHHHHHHHhhhccCCCeEEEEEccCCCC--HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccH
Q psy13788 838 LEVIVSRVNFISSYTKRNVRLVGLSTALAN--AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNK 915 (1034)
Q Consensus 838 ~~~il~rl~~l~~~~~~~~~iv~lSATl~~--~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 915 (1034)
|..+-.-. ..++ +++++++|||-.+ ..|+.+.|+.....++..+.+......++... . ....+
T Consensus 154 Y~~lg~l~----~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~--~--------~~~~q 218 (590)
T COG0514 154 YRRLGRLR----AGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEK--G--------EPSDQ 218 (590)
T ss_pred HHHHHHHH----hhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhc--c--------cHHHH
Confidence 77655433 3344 7889999999876 58899999988766655444332222221111 0 01111
Q ss_pred HHHHHHH--hhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcC
Q psy13788 916 PIYTAIK--QHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHA 993 (1034)
Q Consensus 916 ~~~~~l~--~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~ 993 (1034)
.. .+. .....++.||||.||+.|+.+|+.|.+. +..++.|||
T Consensus 219 ~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~----------------------------------g~~a~~YHa 262 (590)
T COG0514 219 LA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN----------------------------------GISAGAYHA 262 (590)
T ss_pred HH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC----------------------------------CCceEEecC
Confidence 11 333 2345667999999999999999998764 123789999
Q ss_pred CCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 994 AAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 994 ~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
||+.++|+.+++ . |..++++|+|||.++++|| |-+
T Consensus 263 Gl~~~eR~~~q~--~--f~~~~~~iiVAT~AFGMGI-dKp 297 (590)
T COG0514 263 GLSNEERERVQQ--A--FLNDEIKVMVATNAFGMGI-DKP 297 (590)
T ss_pred CCCHHHHHHHHH--H--HhcCCCcEEEEeccccCcc-CCC
Confidence 999999999988 7 9999999999999999999 864
No 60
>KOG0346|consensus
Probab=99.96 E-value=1.6e-28 Score=260.13 Aligned_cols=288 Identities=17% Similarity=0.154 Sum_probs=203.1
Q ss_pred ccCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-------CCCeE
Q psy13788 675 LELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-------PEAKV 747 (1034)
Q Consensus 675 l~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-------~~~~~ 747 (1034)
++|++-++.++.+.+|+. ||-+|+.|||.++ .|+|++..|.||||||.+|++|+++.+... .++.+
T Consensus 24 ~gLD~RllkAi~~lG~ek------pTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa 96 (569)
T KOG0346|consen 24 FGLDSRLLKAITKLGWEK------PTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSA 96 (569)
T ss_pred hCCCHHHHHHHHHhCcCC------cchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhccccccccee
Confidence 388999999888877665 9999999999998 889999999999999999999999988653 36889
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhhcC--CeEEEEcCCCCccc---cccCCCcEEEECHhhHHHHHhccccccccCcccEE
Q psy13788 748 VYIAPLKALVKERVADWKVKFEARLK--KKVVELTGDVTPDI---QAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALI 822 (1034)
Q Consensus 748 lvi~Pt~~L~~q~~~~~~~~~~~~~~--~~v~~~~g~~~~~~---~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~l 822 (1034)
++++||+|||+|.+..+.+ +...++ +++.-+..+.+... .....++|+|+||.++..++.. .....+..+.++
T Consensus 97 ~iLvPTkEL~qQvy~viek-L~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~-~~~~~~~~l~~L 174 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEK-LVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAA-GVLEYLDSLSFL 174 (569)
T ss_pred EEEechHHHHHHHHHHHHH-HHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhh-ccchhhhheeeE
Confidence 9999999999998887764 333333 34444443333222 2246799999999999887763 222667889999
Q ss_pred EEecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCCcc--cccEEEE
Q psy13788 823 IIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSVRP--VPLEVHI 898 (1034)
Q Consensus 823 ViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~--~~l~~~~ 898 (1034)
|+||||++++ ++...+..+. +.+++..|.++||||+.+. ..+.. +-+..+-+..+....-+ ..+..+.
T Consensus 175 VvDEADLllsfGYeedlk~l~-------~~LPr~~Q~~LmSATl~dDv~~LKk-L~l~nPviLkl~e~el~~~dqL~Qy~ 246 (569)
T KOG0346|consen 175 VVDEADLLLSFGYEEDLKKLR-------SHLPRIYQCFLMSATLSDDVQALKK-LFLHNPVILKLTEGELPNPDQLTQYQ 246 (569)
T ss_pred EechhhhhhhcccHHHHHHHH-------HhCCchhhheeehhhhhhHHHHHHH-HhccCCeEEEeccccCCCcccceEEE
Confidence 9999999987 5555444443 5678889999999999763 22332 22333333333222222 2233222
Q ss_pred ecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCH
Q psy13788 899 SGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDS 978 (1034)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 978 (1034)
... . .....-.+|..++..--.+++|||+||...|.++-..|..+...
T Consensus 247 v~c------s-e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGik------------------------- 294 (569)
T KOG0346|consen 247 VKC------S-EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIK------------------------- 294 (569)
T ss_pred EEe------c-cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcH-------------------------
Confidence 211 1 11111123444433333568999999999999887766654322
Q ss_pred HHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechh
Q psy13788 979 NLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRST 1024 (1034)
Q Consensus 979 ~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~ 1024 (1034)
.++++|.||..-|-.|.+ . |..|-++++||||.
T Consensus 295 ---------sciLNseLP~NSR~Hii~--Q--FNkG~YdivIAtD~ 327 (569)
T KOG0346|consen 295 ---------SCILNSELPANSRCHIIE--Q--FNKGLYDIVIATDD 327 (569)
T ss_pred ---------hhhhcccccccchhhHHH--H--hhCcceeEEEEccC
Confidence 578999999999977655 5 99999999999993
No 61
>KOG0332|consensus
Probab=99.96 E-value=9.6e-29 Score=256.85 Aligned_cols=300 Identities=13% Similarity=0.143 Sum_probs=206.9
Q ss_pred ccccCCCCCCCccCccccccccccCCCChhHHHHHHHHhc-CCCcEEEEcCCCChhhHHHHHHHHHHHHh-CCCCeEEEE
Q psy13788 673 NLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYH-TDNNVLLGAPTGSGKTIAAEITCFRVFKQ-CPEAKVVYI 750 (1034)
Q Consensus 673 ~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~-~~~~vll~apTGsGKT~~~~l~il~~l~~-~~~~~~lvi 750 (1034)
+-+.|.|.++.++..++ |+.|+.+|..|+|.++. ..+|.+.++..|+|||.+|.+.++.++.. ...+.++.+
T Consensus 93 eeL~LkPellkgly~M~------F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCL 166 (477)
T KOG0332|consen 93 EELRLKPELLKGLYAMK------FQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICL 166 (477)
T ss_pred HhhCCCHHHHhHHHHhc------cCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceee
Confidence 34588888888776655 55599999999999884 45789999999999999999999988754 246889999
Q ss_pred cCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEeccccc
Q psy13788 751 APLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 751 ~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l 830 (1034)
+|+++||.|+.+.+. .+++..++++.....+.....-..-..+|+|+||+.+.+++... ....+..++.+|+||||.+
T Consensus 167 aPtrELA~Q~~eVv~-eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~kl-k~id~~kikvfVlDEAD~M 244 (477)
T KOG0332|consen 167 APTRELAPQTGEVVE-EMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKL-KCIDLEKIKVFVLDEADVM 244 (477)
T ss_pred CchHHHHHHHHHHHH-HhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHH-HhhChhhceEEEecchhhh
Confidence 999999999888776 57776666655444333222222235789999999998877642 4456788999999999999
Q ss_pred CC--CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCC-C
Q psy13788 831 GE--DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQ-Y 906 (1034)
Q Consensus 831 ~~--~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~-~ 906 (1034)
.+ +|+..--.+. ...+++.|++++|||..+. ..++..+- +........... .++.+..+-+ .
T Consensus 245 i~tqG~~D~S~rI~-------~~lP~~~QllLFSATf~e~V~~Fa~kiv-pn~n~i~Lk~ee------l~L~~IkQlyv~ 310 (477)
T KOG0332|consen 245 IDTQGFQDQSIRIM-------RSLPRNQQLLLFSATFVEKVAAFALKIV-PNANVIILKREE------LALDNIKQLYVL 310 (477)
T ss_pred hhcccccccchhhh-------hhcCCcceEEeeechhHHHHHHHHHHhc-CCCceeeeehhh------ccccchhhheee
Confidence 87 4444333332 2346789999999999652 34443331 111111111100 0111111100 1
Q ss_pred chhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhh
Q psy13788 907 CPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAF 986 (1034)
Q Consensus 907 ~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~ 986 (1034)
|+....... +...+.....-+++||||.|++.+..++..+.+. ++
T Consensus 311 C~~~~~K~~-~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~----------------------------------Gh 355 (477)
T KOG0332|consen 311 CACRDDKYQ-ALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE----------------------------------GH 355 (477)
T ss_pred ccchhhHHH-HHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc----------------------------------Cc
Confidence 111111111 1112333334578999999999999888887664 23
Q ss_pred chhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 987 GIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 987 gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
.|..+||.|..++|..+.+ . |+.|+.+|||+|++++||+ |..+
T Consensus 356 ~V~~l~G~l~~~~R~~ii~--~--Fr~g~~kVLitTnV~ARGi-Dv~q 398 (477)
T KOG0332|consen 356 QVSLLHGDLTVEQRAAIID--R--FREGKEKVLITTNVCARGI-DVAQ 398 (477)
T ss_pred eeEEeeccchhHHHHHHHH--H--HhcCcceEEEEechhhccc-ccce
Confidence 4899999999999988877 6 9999999999999999999 9863
No 62
>KOG0347|consensus
Probab=99.95 E-value=3.4e-29 Score=271.59 Aligned_cols=306 Identities=17% Similarity=0.185 Sum_probs=199.5
Q ss_pred CCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC--------------
Q psy13788 677 LQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-------------- 742 (1034)
Q Consensus 677 l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-------------- 742 (1034)
+++..+.+|.+ .||+.|+|+|..++|.+.+...|++..|.||||||++|-+|++..+...
T Consensus 188 lp~~iL~aL~~------~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~ 261 (731)
T KOG0347|consen 188 LPMEILRALSN------LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKY 261 (731)
T ss_pred CCHHHHHHHHh------cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhcc
Confidence 33444455554 3567799999999999985557999999999999999999999854321
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhcccc-ccccCc
Q psy13788 743 PEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQN-RNYVQS 818 (1034)
Q Consensus 743 ~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~-~~~l~~ 818 (1034)
+.+..||++|||+||.|+...+.. ..+..++++..++|+.....+. ...++|||+||++|..++..-.. ...+++
T Consensus 262 ~k~~~LV~tPTRELa~QV~~Hl~a-i~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 262 VKPIALVVTPTRELAHQVKQHLKA-IAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred CcceeEEecChHHHHHHHHHHHHH-hccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 234599999999999999988874 5556899999999998765543 34789999999999888874322 345788
Q ss_pred ccEEEEecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH--HHHHhHhcccCCc---------e-eec
Q psy13788 819 VALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA--KDLATWLNITKQG---------M-YNF 885 (1034)
Q Consensus 819 l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~--~~l~~~l~~~~~~---------~-~~~ 885 (1034)
++++|+||+|+|.. +.-..+..++..+. -.+.....|.+.+|||+.-. ..+.......... + -..
T Consensus 341 vkcLVlDEaDRmvekghF~Els~lL~~L~--e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 341 VKCLVLDEADRMVEKGHFEELSKLLKHLN--EEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred ceEEEEccHHHHhhhccHHHHHHHHHHhh--hhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 99999999999986 44456666666554 24455677999999998541 1111111000000 0 000
Q ss_pred CCCCcccccEEEEecCCC------CCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCc
Q psy13788 886 RPSVRPVPLEVHISGFPG------KQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKM 959 (1034)
Q Consensus 886 ~~~~r~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~ 959 (1034)
.-...|.-+....+.-.. .-.|+. ......+|..+.. -.+++|||||++..+.+++-.|... +
T Consensus 419 g~~~kpkiiD~t~q~~ta~~l~Es~I~C~~-~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L----~---- 487 (731)
T KOG0347|consen 419 GFRGKPKIIDLTPQSATASTLTESLIECPP-LEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNL----D---- 487 (731)
T ss_pred CccCCCeeEecCcchhHHHHHHHHhhcCCc-cccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhc----C----
Confidence 000111111110000000 000000 0000001112222 2468999999999887776554331 1
Q ss_pred ccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 960 WVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 960 ~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
..-..+|+.|.++.|-.-.+ . |++....||||||+++||+ |+-
T Consensus 488 --------------------------i~p~~LHA~M~QKqRLknLE--k--F~~~~~~VLiaTDVAARGL-DIp 530 (731)
T KOG0347|consen 488 --------------------------IPPLPLHASMIQKQRLKNLE--K--FKQSPSGVLIATDVAARGL-DIP 530 (731)
T ss_pred --------------------------CCCchhhHHHHHHHHHHhHH--H--HhcCCCeEEEeehhhhccC-CCC
Confidence 11357999999999955433 3 9999999999999999999 973
No 63
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.95 E-value=2.9e-27 Score=296.86 Aligned_cols=274 Identities=13% Similarity=0.204 Sum_probs=196.3
Q ss_pred ccccccccCCCChhHHHHHHHHhcC-----CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHH
Q psy13788 689 QYESLYKFSHFNPIQTQIFHCLYHT-----DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVAD 763 (1034)
Q Consensus 689 ~~~~~~~~~~~~~~Q~~ai~~l~~~-----~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~ 763 (1034)
.+...|+|. ||+.|.+|++.++.. ..|+++++|||+|||.+|+.+++..+.. +.+++|++||++|+.|+++.
T Consensus 592 ~~~~~~~~~-~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--g~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 592 LFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--HKQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred HHHHhCCCC-CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHH
Confidence 456667885 999999999998742 2789999999999999999988877654 78999999999999999999
Q ss_pred HHHHhhhhcCCeEEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChh
Q psy13788 764 WKVKFEARLKKKVVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGP 836 (1034)
Q Consensus 764 ~~~~~~~~~~~~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~ 836 (1034)
+.+.+.. .++++..++|..+...+. ...++|+|+||+.+ + ....+.+++++|+||+|+++.
T Consensus 669 f~~~~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~---~~v~~~~L~lLVIDEahrfG~---- 736 (1147)
T PRK10689 669 FRDRFAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q---SDVKWKDLGLLIVDEEHRFGV---- 736 (1147)
T ss_pred HHHhhcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h---CCCCHhhCCEEEEechhhcch----
Confidence 9987766 578888888876544332 13689999999743 2 223467899999999999742
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccH
Q psy13788 837 VLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNK 915 (1034)
Q Consensus 837 ~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 915 (1034)
... .++ ...+.+++++++|||+.+ ...++. .+..+..++...|.. ..++......+.. .....
T Consensus 737 ~~~---e~l----k~l~~~~qvLl~SATpiprtl~l~~-~gl~d~~~I~~~p~~-r~~v~~~~~~~~~-------~~~k~ 800 (1147)
T PRK10689 737 RHK---ERI----KAMRADVDILTLTATPIPRTLNMAM-SGMRDLSIIATPPAR-RLAVKTFVREYDS-------LVVRE 800 (1147)
T ss_pred hHH---HHH----HhcCCCCcEEEEcCCCCHHHHHHHH-hhCCCcEEEecCCCC-CCCceEEEEecCc-------HHHHH
Confidence 112 222 233567899999999754 222222 233333333333332 2334333322110 01111
Q ss_pred HHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCC
Q psy13788 916 PIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAA 995 (1034)
Q Consensus 916 ~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~ 995 (1034)
. .+.....+++++||||+++.++.+++.|.+.... .+|..+||+|
T Consensus 801 ~---il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~--------------------------------~~v~~lHG~m 845 (1147)
T PRK10689 801 A---ILREILRGGQVYYLYNDVENIQKAAERLAELVPE--------------------------------ARIAIGHGQM 845 (1147)
T ss_pred H---HHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCC--------------------------------CcEEEEeCCC
Confidence 2 2223335678999999999999998888764321 2378899999
Q ss_pred CHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 996 EAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 996 ~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++++|+.++. . |++|+++|||||+++++|+ |+.
T Consensus 846 ~q~eRe~im~--~--Fr~Gk~~VLVaTdIierGI-DIP 878 (1147)
T PRK10689 846 RERELERVMN--D--FHHQRFNVLVCTTIIETGI-DIP 878 (1147)
T ss_pred CHHHHHHHHH--H--HHhcCCCEEEECchhhccc-ccc
Confidence 9999999977 6 9999999999999999999 985
No 64
>KOG0947|consensus
Probab=99.95 E-value=8.8e-29 Score=283.07 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=98.1
Q ss_pred ccce-ecchhH----HHHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHH
Q psy13788 104 HGCY-VHIGIL----DVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQ 177 (1034)
Q Consensus 104 ~g~~-~h~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Q 177 (1034)
+|+. ||+|+| ++.+++.. +..++.+|+|+||+| |||||| +|||.+++++||. .+++|.+.||.|
T Consensus 631 RGiaVHH~GlLPivKE~VE~LFq-------rGlVKVLFATETFAM-GVNMPARtvVF~Sl~KhDG~--efR~L~PGEytQ 700 (1248)
T KOG0947|consen 631 RGIAVHHGGLLPIVKEVVELLFQ-------RGLVKVLFATETFAM-GVNMPARTVVFSSLRKHDGN--EFRELLPGEYTQ 700 (1248)
T ss_pred hcchhhcccchHHHHHHHHHHHh-------cCceEEEeehhhhhh-hcCCCceeEEeeehhhccCc--ceeecCChhHHh
Confidence 7884 466777 44444433 235699999999997 899999 8999999999975 369999999999
Q ss_pred HhhccCCCCccccceEEEECCcc--cHHHHHHHh-cCCcceecccccchHHHHhhhh
Q psy13788 178 IFGRAGRPQYNTSGHATIITPHE--KLNHYLSLL-TNQIPIESNFVANLADNLNAEV 231 (1034)
Q Consensus 178 m~GRAGR~~~d~~G~~~i~~~~~--~~~~y~~~~-~~~~~i~s~l~~~~~~~ln~e~ 231 (1034)
|+|||||+|+|..|.+||+|... ......+++ +.+.+++|+|.-+|.+.||.--
T Consensus 701 MAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~SQFRlTY~MILnLLR 757 (1248)
T KOG0947|consen 701 MAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLESQFRLTYGMILNLLR 757 (1248)
T ss_pred hhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999873 555666555 7789999999999999999754
No 65
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.95 E-value=3.6e-27 Score=286.98 Aligned_cols=274 Identities=18% Similarity=0.255 Sum_probs=188.3
Q ss_pred cccccccCCCChhHHHHHHHHhcC-----CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHH
Q psy13788 690 YESLYKFSHFNPIQTQIFHCLYHT-----DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADW 764 (1034)
Q Consensus 690 ~~~~~~~~~~~~~Q~~ai~~l~~~-----~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~ 764 (1034)
+.+.++|. ||++|.+|++.+... ..+.+++||||||||++|++|++..+.. +.+++|++||++||.|+++.+
T Consensus 254 ~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--g~q~lilaPT~~LA~Q~~~~l 330 (681)
T PRK10917 254 FLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--GYQAALMAPTEILAEQHYENL 330 (681)
T ss_pred HHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEeccHHHHHHHHHHH
Confidence 33446776 999999999998732 1489999999999999999999988764 789999999999999999999
Q ss_pred HHHhhhhcCCeEEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhH
Q psy13788 765 KVKFEARLKKKVVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPV 837 (1034)
Q Consensus 765 ~~~~~~~~~~~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~ 837 (1034)
++.+.. +++++..++|+.+...+. ...++|+|+||+.+. ....+.+++++|+||+|+++. .
T Consensus 331 ~~l~~~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~v~~~~l~lvVIDE~Hrfg~----~ 398 (681)
T PRK10917 331 KKLLEP-LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-------DDVEFHNLGLVIIDEQHRFGV----E 398 (681)
T ss_pred HHHHhh-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-------ccchhcccceEEEechhhhhH----H
Confidence 977765 789999999998753321 235899999998763 233478899999999999753 1
Q ss_pred HHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHh-HhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHH
Q psy13788 838 LEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLAT-WLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKP 916 (1034)
Q Consensus 838 ~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~-~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 916 (1034)
....+. ....+.++++||||+.+ +.++. ..+..........|..+. ++........ . ...
T Consensus 399 qr~~l~-------~~~~~~~iL~~SATp~p-rtl~~~~~g~~~~s~i~~~p~~r~-~i~~~~~~~~------~----~~~ 459 (681)
T PRK10917 399 QRLALR-------EKGENPHVLVMTATPIP-RTLAMTAYGDLDVSVIDELPPGRK-PITTVVIPDS------R----RDE 459 (681)
T ss_pred HHHHHH-------hcCCCCCEEEEeCCCCH-HHHHHHHcCCCceEEEecCCCCCC-CcEEEEeCcc------c----HHH
Confidence 121111 12345789999999753 22222 122111122222222222 3333332211 0 112
Q ss_pred HHHHHHh-hCCCCCeEEEecChHHHH--------HHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhc
Q psy13788 917 IYTAIKQ-HSPEKPVMIFVSSRRQTR--------LTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFG 987 (1034)
Q Consensus 917 ~~~~l~~-~~~~~~~lVF~~s~~~~~--------~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~g 987 (1034)
+++.+.. ...+.+++|||+.++.++ .+++.|.+.+. ...
T Consensus 460 ~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~--------------------------------~~~ 507 (681)
T PRK10917 460 VYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP--------------------------------ELR 507 (681)
T ss_pred HHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCC--------------------------------CCc
Confidence 3333322 245679999999765443 22322222110 134
Q ss_pred hhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 988 IGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 988 v~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
|+.+||+|++++|+.+++ . |++|+++|||||+++++|+ |+.+
T Consensus 508 v~~lHG~m~~~eR~~i~~--~--F~~g~~~ILVaT~vie~Gi-Dip~ 549 (681)
T PRK10917 508 VGLLHGRMKPAEKDAVMA--A--FKAGEIDILVATTVIEVGV-DVPN 549 (681)
T ss_pred EEEEeCCCCHHHHHHHHH--H--HHcCCCCEEEECcceeeCc-ccCC
Confidence 899999999999999988 7 9999999999999999999 9853
No 66
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.95 E-value=4.8e-27 Score=284.24 Aligned_cols=274 Identities=16% Similarity=0.224 Sum_probs=186.5
Q ss_pred cccccCCCChhHHHHHHHHhcC-----CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy13788 692 SLYKFSHFNPIQTQIFHCLYHT-----DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKV 766 (1034)
Q Consensus 692 ~~~~~~~~~~~Q~~ai~~l~~~-----~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~ 766 (1034)
+.++|+ ||+.|.+|++.++.. ..+.+++||||||||++|++|++..+.. +.+++|++||++|+.|+++.+.+
T Consensus 230 ~~lpf~-lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--g~qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 230 ASLPFK-LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--GYQVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred HhCCCC-CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEECCHHHHHHHHHHHHHH
Confidence 345784 999999999998742 1368999999999999999999988765 78999999999999999999997
Q ss_pred HhhhhcCCeEEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHH
Q psy13788 767 KFEARLKKKVVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLE 839 (1034)
Q Consensus 767 ~~~~~~~~~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~ 839 (1034)
.+.. +++++..++|+.....+. ...++|+|+||+.+.. ...+.+++++|+||+|+++... +
T Consensus 307 l~~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-------~~~~~~l~lvVIDEaH~fg~~q----r 374 (630)
T TIGR00643 307 LLAP-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-------KVEFKRLALVIIDEQHRFGVEQ----R 374 (630)
T ss_pred Hhcc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-------cccccccceEEEechhhccHHH----H
Confidence 7765 789999999987654321 2357999999987632 2346889999999999975321 1
Q ss_pred HHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhH-hcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHH
Q psy13788 840 VIVSRVNFISSYTKRNVRLVGLSTALANAKDLATW-LNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIY 918 (1034)
Q Consensus 840 ~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~-l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 918 (1034)
..+... .......+++++|||+.+ +.++.. .+..........|..+ .++........ . ...++
T Consensus 375 ~~l~~~----~~~~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r-~~i~~~~~~~~------~----~~~~~ 438 (630)
T TIGR00643 375 KKLREK----GQGGFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGR-KPITTVLIKHD------E----KDIVY 438 (630)
T ss_pred HHHHHh----cccCCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCC-CceEEEEeCcc------h----HHHHH
Confidence 111111 000125789999999754 222211 1111111111112222 23333322110 0 12344
Q ss_pred HHHHhh-CCCCCeEEEecChHHHH--------HHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchh
Q psy13788 919 TAIKQH-SPEKPVMIFVSSRRQTR--------LTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIG 989 (1034)
Q Consensus 919 ~~l~~~-~~~~~~lVF~~s~~~~~--------~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~ 989 (1034)
..+... ..+.+++|||+..+.++ .++..|.+.+ -+..|+
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~--------------------------------~~~~v~ 486 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF--------------------------------PKYNVG 486 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhC--------------------------------CCCcEE
Confidence 444332 45679999999875443 2232222211 123589
Q ss_pred hhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 990 FHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 990 ~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
.+||+|++++|+.+++ . |++|+++|||||+++++|| |+.
T Consensus 487 ~lHG~m~~~eR~~i~~--~--F~~g~~~ILVaT~vie~Gv-DiP 525 (630)
T TIGR00643 487 LLHGRMKSDEKEAVME--E--FREGEVDILVATTVIEVGV-DVP 525 (630)
T ss_pred EEeCCCCHHHHHHHHH--H--HHcCCCCEEEECceeecCc-ccC
Confidence 9999999999999988 7 9999999999999999999 985
No 67
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.95 E-value=5.5e-27 Score=279.32 Aligned_cols=290 Identities=16% Similarity=0.173 Sum_probs=184.5
Q ss_pred cccccccCCCChhHHHHHHHHhcCCC-cEEEEcCCCChhhHHHHHHHHHHHHhCC-CCeEEEEcCcHHHHHHHHHHHHHH
Q psy13788 690 YESLYKFSHFNPIQTQIFHCLYHTDN-NVLLGAPTGSGKTIAAEITCFRVFKQCP-EAKVVYIAPLKALVKERVADWKVK 767 (1034)
Q Consensus 690 ~~~~~~~~~~~~~Q~~ai~~l~~~~~-~vll~apTGsGKT~~~~l~il~~l~~~~-~~~~lvi~Pt~~L~~q~~~~~~~~ 767 (1034)
|..+.||+ |+|+|.++++.++ .|+ ++++.+|||||||.++.++.+....... ..+++|++|||+|+.|+++.+.+
T Consensus 8 f~~~~G~~-PtpiQ~~~i~~il-~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~- 84 (844)
T TIGR02621 8 YQGLHGYS-PFPWQLSLAERFV-AGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEK- 84 (844)
T ss_pred HHHHhCCC-CCHHHHHHHHHHH-cCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHH-
Confidence 44556888 9999999999998 665 6888999999999976655543322222 34566688999999999998875
Q ss_pred hhhhc-----------------------CCeEEEEcCCCCccccc---cCCCcEEEECHhhHHH-HHh-ccc--------
Q psy13788 768 FEARL-----------------------KKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDG-VSR-SWQ-------- 811 (1034)
Q Consensus 768 ~~~~~-----------------------~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~-l~~-~~~-------- 811 (1034)
+++.+ ++++..+.|+...+.+. ..+++|||+|++.+.+ .+. .+.
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi 164 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPL 164 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccc
Confidence 44333 47888899998765544 3478999999876622 110 000
Q ss_pred cccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCCc
Q psy13788 812 NRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSVR 890 (1034)
Q Consensus 812 ~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r 890 (1034)
....+.+++++|+|||| +...|...++.+++.+.. .....+.|+++||||++. ..++...+..... .+.......
T Consensus 165 ~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~r--p~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~-~i~V~~~~l 240 (844)
T TIGR02621 165 HAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQR--PPDFLPLRVVELTATSRTDGPDRTTLLSAEDY-KHPVLKKRL 240 (844)
T ss_pred hhhhhccceEEEEehhh-hccccHHHHHHHHHhccc--CcccccceEEEEecCCCccHHHHHHHHccCCc-eeecccccc
Confidence 01136789999999999 444777777777754310 001123689999999975 3344444332221 111111110
Q ss_pred cc-ccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHH
Q psy13788 891 PV-PLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMD 969 (1034)
Q Consensus 891 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~ 969 (1034)
.. .+. ++...+.. .....+...+...+. ..++++||||||++.|+.+++.|.+.
T Consensus 241 ~a~ki~-q~v~v~~e---~Kl~~lv~~L~~ll~--e~g~~vLVF~NTv~~Aq~L~~~L~~~------------------- 295 (844)
T TIGR02621 241 AAKKIV-KLVPPSDE---KFLSTMVKELNLLMK--DSGGAILVFCRTVKHVRKVFAKLPKE------------------- 295 (844)
T ss_pred cccceE-EEEecChH---HHHHHHHHHHHHHHh--hCCCcEEEEECCHHHHHHHHHHHHhc-------------------
Confidence 00 111 11111000 001111111111121 24578999999999999999887542
Q ss_pred HHHhhcCCHHHHHHhhhchhhhcCCCCHHHHH-----HhcccchhHhhc----CC-------ceEEEechhhhhccCCCC
Q psy13788 970 NIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSS-----ALQMPKLAALSS----KE-------NQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 970 ~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~-----~ie~~~l~~f~~----g~-------i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++..+||+|++.+|+ .+.+ . |++ |+ .+|||||+++++|| |++
T Consensus 296 -----------------g~~lLHG~m~q~dR~~~~~~~il~--~--Fk~~~~~g~~~~~~~g~~ILVATdVaerGL-DId 353 (844)
T TIGR02621 296 -----------------KFELLTGTLRGAERDDLVKKEIFN--R--FLPQMLSGSRARPQQGTVYLVCTSAGEVGV-NIS 353 (844)
T ss_pred -----------------CCeEeeCCCCHHHHhhHHHHHHHH--H--HhccccccccccccccceEEeccchhhhcc-cCC
Confidence 246899999999998 5555 4 876 44 78999999999999 996
No 68
>KOG0344|consensus
Probab=99.95 E-value=3.3e-28 Score=268.84 Aligned_cols=287 Identities=18% Similarity=0.262 Sum_probs=200.1
Q ss_pred ccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHHHh
Q psy13788 695 KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC------PEAKVVYIAPLKALVKERVADWKVKF 768 (1034)
Q Consensus 695 ~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~------~~~~~lvi~Pt~~L~~q~~~~~~~~~ 768 (1034)
+|..|+|+|.+|+|.++ .+++++.|||||||||++|.+|++..+... .+.+++|+.|+++|+.|.++++.+ +
T Consensus 155 ~F~~Pt~iq~~aipvfl-~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k-~ 232 (593)
T KOG0344|consen 155 GFDEPTPIQKQAIPVFL-EKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRK-Y 232 (593)
T ss_pred CCCCCCcccchhhhhhh-cccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHh-c
Confidence 57779999999999998 899999999999999999999999988653 257999999999999999999885 3
Q ss_pred h--hhcCCeEEEEcCCCCccccc----cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCC--ChhHHHH
Q psy13788 769 E--ARLKKKVVELTGDVTPDIQA----ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED--RGPVLEV 840 (1034)
Q Consensus 769 ~--~~~~~~v~~~~g~~~~~~~~----~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~--~~~~~~~ 840 (1034)
. +..+..+..+.....+..+. ...++|+++||-++..++........+..+.++|+||+|++.+. |..++..
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~ 312 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLAD 312 (593)
T ss_pred CCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHH
Confidence 3 33445555554443222211 24689999999999888774334457899999999999999873 3334444
Q ss_pred HHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCC-CchhhhhccHHHHH
Q psy13788 841 IVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQ-YCPRMAKMNKPIYT 919 (1034)
Q Consensus 841 il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~ 919 (1034)
+++ ....+++++-+||||.+ ..+.+|............-..++.-.+. ..+.. ++.......-.+.+
T Consensus 313 I~s------ac~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~~~sa~~~----V~QelvF~gse~~K~lA~rq 380 (593)
T KOG0344|consen 313 IYS------ACQSPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGLRNSANET----VDQELVFCGSEKGKLLALRQ 380 (593)
T ss_pred HHH------HhcCcchhhhhhhcccc--HHHHHHHHHhhccceeEEEecchhHhhh----hhhhheeeecchhHHHHHHH
Confidence 443 23457888899999984 5677887644333222111111111000 00000 11111111111222
Q ss_pred HHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHH
Q psy13788 920 AIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQ 999 (1034)
Q Consensus 920 ~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~ 999 (1034)
.+ ..+-.+|++||+.+.++|..+...|. ..+ ...|+++||+.++.+
T Consensus 381 ~v-~~g~~PP~lIfVQs~eRak~L~~~L~---~~~------------------------------~i~v~vIh~e~~~~q 426 (593)
T KOG0344|consen 381 LV-ASGFKPPVLIFVQSKERAKQLFEELE---IYD------------------------------NINVDVIHGERSQKQ 426 (593)
T ss_pred HH-hccCCCCeEEEEecHHHHHHHHHHhh---hcc------------------------------CcceeeEecccchhH
Confidence 33 23456899999999999998887763 111 112899999999999
Q ss_pred HHHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 1000 SSALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 1000 R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
|+...+ . |+.|+++|||||++++||+ ||.+
T Consensus 427 rde~~~--~--FR~g~IwvLicTdll~RGi-Df~g 456 (593)
T KOG0344|consen 427 RDETME--R--FRIGKIWVLICTDLLARGI-DFKG 456 (593)
T ss_pred HHHHHH--H--HhccCeeEEEehhhhhccc-cccC
Confidence 988866 6 9999999999999999999 9974
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=2.2e-26 Score=259.70 Aligned_cols=281 Identities=20% Similarity=0.227 Sum_probs=178.9
Q ss_pred hHHHHHHHHhcCCC-cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhh---cCCeEE
Q psy13788 702 IQTQIFHCLYHTDN-NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR---LKKKVV 777 (1034)
Q Consensus 702 ~Q~~ai~~l~~~~~-~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~---~~~~v~ 777 (1034)
+|.++++++++++. +++++||||||||.+|++|++.. +.+++|++|+++|++|++++|.+.+... .+..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 59999999986553 58899999999999999998853 5689999999999999999999877542 256777
Q ss_pred EEcCCCCcccc-----------------------ccCCCcEEEECHhhHHHHHhccccc------cccCcccEEEEeccc
Q psy13788 778 ELTGDVTPDIQ-----------------------AISSASVIVTTPEKWDGVSRSWQNR------NYVQSVALIIIDEIH 828 (1034)
Q Consensus 778 ~~~g~~~~~~~-----------------------~~~~~~IiV~Tpe~l~~l~~~~~~~------~~l~~l~~lViDEaH 828 (1034)
.++|+...+.+ ....++|+++||+.|..+++.+... .++.+++++|+||+|
T Consensus 76 ~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 88886332200 0235789999999998877754221 136889999999999
Q ss_pred ccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH--HHHHhH--hcccC----CceeecCC-----------CC
Q psy13788 829 LLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA--KDLATW--LNITK----QGMYNFRP-----------SV 889 (1034)
Q Consensus 829 ~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~--~~l~~~--l~~~~----~~~~~~~~-----------~~ 889 (1034)
.+.......+...+..+..+.. .....+++++|||++.. +.+.+. ++.+- ...+.+.. ..
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRF-FECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred ccCcccchhhhhhhHHHHHHHh-hhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 9875333333333333333322 22347999999999752 222222 11110 01011110 11
Q ss_pred ccc--ccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHH
Q psy13788 890 RPV--PLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAE 967 (1034)
Q Consensus 890 r~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 967 (1034)
|++ +++..+.. .............+.+.+.++. ..++++||||||++.|+.++..|.+...
T Consensus 235 ~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~-~~~~k~LIf~nt~~~~~~l~~~L~~~~~--------------- 297 (357)
T TIGR03158 235 RPVLPPVELELIP-APDFKEEELSELAEEVIERFRQ-LPGERGAIILDSLDEVNRLSDLLQQQGL--------------- 297 (357)
T ss_pred ceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhc-cCCCeEEEEECCHHHHHHHHHHHhhhCC---------------
Confidence 221 23333322 1111111111111112222222 2467899999999999999988865310
Q ss_pred HHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 968 MDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 968 ~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+..+..+||.+++.+|..+ ++.+|||||+++++|| |++
T Consensus 298 -----------------~~~~~~l~g~~~~~~R~~~----------~~~~iLVaTdv~~rGi-Di~ 335 (357)
T TIGR03158 298 -----------------GDDIGRITGFAPKKDRERA----------MQFDILLGTSTVDVGV-DFK 335 (357)
T ss_pred -----------------CceEEeeecCCCHHHHHHh----------ccCCEEEEecHHhccc-CCC
Confidence 1126789999999988644 2568999999999999 986
No 70
>KOG4284|consensus
Probab=99.94 E-value=2.7e-27 Score=260.46 Aligned_cols=286 Identities=12% Similarity=0.186 Sum_probs=215.5
Q ss_pred ccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh-CCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 695 KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-CPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 695 ~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~-~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+|..|+++|..|||.++ .+-|+||+|..|+|||++|...+++.+.. ......+|++|||+++-|+...+.+...+..|
T Consensus 44 ~f~~ptkiQaaAIP~~~-~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 44 AFALPTKIQAAAIPAIF-SKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred cccCCCchhhhhhhhhh-cccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 46669999999999998 88999999999999999999888877643 35689999999999999999999877777789
Q ss_pred CeEEEEcCCCCcc--ccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC--CChhHHHHHHHHHHHhh
Q psy13788 774 KKVVELTGDVTPD--IQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE--DRGPVLEVIVSRVNFIS 849 (1034)
Q Consensus 774 ~~v~~~~g~~~~~--~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~--~~~~~~~~il~rl~~l~ 849 (1034)
.++..+.|+.... ...++.++|+|+||+++..+.. .......+++++|+||||.|.+ .|...+..++.
T Consensus 123 ~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~e--l~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~------ 194 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVE--LGAMNMSHVRLFVLDEADKLMDTESFQDDINIIIN------ 194 (980)
T ss_pred cceEEEecCchhhhhhhhhhhceEEecCchHHHHHHH--hcCCCccceeEEEeccHHhhhchhhHHHHHHHHHH------
Confidence 9999999987654 3346789999999999988887 4566789999999999999976 67777766664
Q ss_pred hccCCCeEEEEEccCCCC--HHHHHhHhcccCCceeecCCCC-cccccEEEEecCCCCCCc-hhhhhccHHHHHHHHhhC
Q psy13788 850 SYTKRNVRLVGLSTALAN--AKDLATWLNITKQGMYNFRPSV-RPVPLEVHISGFPGKQYC-PRMAKMNKPIYTAIKQHS 925 (1034)
Q Consensus 850 ~~~~~~~~iv~lSATl~~--~~~l~~~l~~~~~~~~~~~~~~-r~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 925 (1034)
.++...|++++|||.|. ...++.++. ++.++.+..+. .-..|..++......... ..+..+...+-..+. .-
T Consensus 195 -slP~~rQv~a~SATYp~nLdn~Lsk~mr--dp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~-~i 270 (980)
T KOG4284|consen 195 -SLPQIRQVAAFSATYPRNLDNLLSKFMR--DPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFK-SI 270 (980)
T ss_pred -hcchhheeeEEeccCchhHHHHHHHHhc--ccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHh-hC
Confidence 55778899999999876 345666654 23333333322 122333343333332222 223333333333333 33
Q ss_pred CCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcc
Q psy13788 926 PEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQM 1005 (1034)
Q Consensus 926 ~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~ 1005 (1034)
+-.+.||||+....|+.+|..|... +..+.++.|.|++.+|..+..
T Consensus 271 py~QAlVF~~~~sra~~~a~~L~ss----------------------------------G~d~~~ISgaM~Q~~Rl~a~~ 316 (980)
T KOG4284|consen 271 PYVQALVFCDQISRAEPIATHLKSS----------------------------------GLDVTFISGAMSQKDRLLAVD 316 (980)
T ss_pred chHHHHhhhhhhhhhhHHHHHhhcc----------------------------------CCCeEEeccccchhHHHHHHH
Confidence 5568999999999999888766442 233788999999999977755
Q ss_pred cchhHhhcCCceEEEechhhhhccCCC
Q psy13788 1006 PKLAALSSKENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 1006 ~~l~~f~~g~i~VLVaT~~l~~Gv~Df 1032 (1034)
. ++.-..+|||+||..+||| |=
T Consensus 317 --~--lr~f~~rILVsTDLtaRGI-Da 338 (980)
T KOG4284|consen 317 --Q--LRAFRVRILVSTDLTARGI-DA 338 (980)
T ss_pred --H--hhhceEEEEEecchhhccC-Cc
Confidence 4 8999999999999999999 94
No 71
>KOG0950|consensus
Probab=99.94 E-value=1.1e-26 Score=268.90 Aligned_cols=319 Identities=22% Similarity=0.345 Sum_probs=239.1
Q ss_pred ccCCCChhHHHHH--HHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 695 KFSHFNPIQTQIF--HCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 695 ~~~~~~~~Q~~ai--~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
|...+..+|.+++ +.++ .++|.+..+||+.|||+++.+-+++.+... ...++.+.|..+.+.+....+...+.+ +
T Consensus 220 gi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~-rr~~llilp~vsiv~Ek~~~l~~~~~~-~ 296 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCR-RRNVLLILPYVSIVQEKISALSPFSID-L 296 (1008)
T ss_pred hHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHH-hhceeEecceeehhHHHHhhhhhhccc-c
Confidence 4455788999998 5676 889999999999999999999998776542 678999999999999888877754444 8
Q ss_pred CCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhc
Q psy13788 773 KKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSY 851 (1034)
Q Consensus 773 ~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~ 851 (1034)
|+.+..+.|..++.. ..+.-++.|||.|+-..+..+.-....+..+++||+||.|++++ ++|..++.++..+.+....
T Consensus 297 G~~ve~y~g~~~p~~-~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~ 375 (1008)
T KOG0950|consen 297 GFPVEEYAGRFPPEK-RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE 375 (1008)
T ss_pred CCcchhhcccCCCCC-cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc
Confidence 999998888776654 33467899999999988887766667788899999999999999 8999999999999887443
Q ss_pred cCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCch-hhhhccHHH-------------
Q psy13788 852 TKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCP-RMAKMNKPI------------- 917 (1034)
Q Consensus 852 ~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~-~~~~~~~~~------------- 917 (1034)
..+|+||+|||++|..++..|+.. +.+....||+++..++..-.. -+.. +.....+..
T Consensus 376 --~~~~iIGMSATi~N~~lL~~~L~A-----~~y~t~fRPv~L~E~ik~G~~-i~~~~r~~~lr~ia~l~~~~~g~~dpD 447 (1008)
T KOG0950|consen 376 --TSVQIIGMSATIPNNSLLQDWLDA-----FVYTTRFRPVPLKEYIKPGSL-IYESSRNKVLREIANLYSSNLGDEDPD 447 (1008)
T ss_pred --cceeEeeeecccCChHHHHHHhhh-----hheecccCcccchhccCCCcc-cccchhhHHHHHhhhhhhhhcccCCCc
Confidence 338999999999999999999983 234667889988766532111 1111 211111100
Q ss_pred --HHHH-HhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccC-CChHHHHHHH---hhcCCHHHHHHhhhchhh
Q psy13788 918 --YTAI-KQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVH-TSDAEMDNIV---DNIKDSNLKLTIAFGIGF 990 (1034)
Q Consensus 918 --~~~l-~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~-~~~~~~~~~~---~~i~d~~l~~~l~~gv~~ 990 (1034)
.... +....+.++||||++++.|+.+|..+....+.......... .........+ ...-|+.+..++++||++
T Consensus 448 ~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAy 527 (1008)
T KOG0950|consen 448 HLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAY 527 (1008)
T ss_pred ceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecccccee
Confidence 0001 11123567999999999999999877766554321111111 0111111112 223478899999999999
Q ss_pred hcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhcc
Q psy13788 991 HHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGN 1029 (1034)
Q Consensus 991 ~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv 1029 (1034)
||+|++.++|+.|+. . |+.|.++|++||+++++|+
T Consensus 528 HhaGLT~eER~~iE~--a--fr~g~i~vl~aTSTlaaGV 562 (1008)
T KOG0950|consen 528 HHAGLTSEEREIIEA--A--FREGNIFVLVATSTLAAGV 562 (1008)
T ss_pred cccccccchHHHHHH--H--HHhcCeEEEEecchhhccC
Confidence 999999999999998 7 9999999999999999999
No 72
>KOG0327|consensus
Probab=99.94 E-value=3.9e-27 Score=248.01 Aligned_cols=292 Identities=15% Similarity=0.172 Sum_probs=210.5
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh-CCCCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-CPEAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~-~~~~~~lvi~Pt~ 754 (1034)
+|++.++..+.. |||+.|+.+|+.|+..+. .|.|+.+.+++|+|||.+|.+++++.+.- .....+++++|++
T Consensus 32 ~L~e~LLrgiy~------yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtr 104 (397)
T KOG0327|consen 32 NLKESLLRGIYA------YGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTR 104 (397)
T ss_pred CCCHHHHhHHHh------hccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchH
Confidence 555555554443 577789999999998887 89999999999999999999999988633 2357899999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccc--c--cCCCcEEEECHhhHHHHHhccccccccCcccEEEEeccccc
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQ--A--ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~--~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l 830 (1034)
+|+.|..... ..++..++.++..+.|+.....+ . ...++|+++||+++..++.. .....+.++++|+||||.+
T Consensus 105 eLa~qi~~v~-~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~--~~l~~~~iKmfvlDEaDEm 181 (397)
T KOG0327|consen 105 ELAQQIQKVV-RALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR--GSLSTDGIKMFVLDEADEM 181 (397)
T ss_pred HHHHHHHHHH-HhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc--ccccccceeEEeecchHhh
Confidence 9999988554 46777788999988887654422 2 23589999999999888873 3556677999999999999
Q ss_pred CC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCch
Q psy13788 831 GE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCP 908 (1034)
Q Consensus 831 ~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~ 908 (1034)
.. +|...+..+. ...+.++|++++|||.|. ...+.+-+...+..+..-.....-..+...+.....
T Consensus 182 Ls~gfkdqI~~if-------~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k----- 249 (397)
T KOG0327|consen 182 LSRGFKDQIYDIF-------QELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEK----- 249 (397)
T ss_pred hccchHHHHHHHH-------HHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccc-----
Confidence 87 7777777766 456788999999999986 344554333222111110000000001111111100
Q ss_pred hhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhch
Q psy13788 909 RMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGI 988 (1034)
Q Consensus 909 ~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv 988 (1034)
......+.+... ...+++||||+++.+..+...|..+ ++.+
T Consensus 250 --~~k~~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~----------------------------------~~~~ 290 (397)
T KOG0327|consen 250 --EEKLDTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAH----------------------------------GFTV 290 (397)
T ss_pred --cccccHHHHHHH---hhhcceEEecchhhHHHHHHHHhhC----------------------------------CceE
Confidence 011222333333 4568999999999999888777432 2337
Q ss_pred hhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 989 GFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 989 ~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
..+||.|.+.+|..+.+ . |++|..+|||.|+.++||+ |+-
T Consensus 291 s~~~~d~~q~~R~~~~~--e--f~~gssrvlIttdl~argi-dv~ 330 (397)
T KOG0327|consen 291 SAIHGDMEQNERDTLMR--E--FRSGSSRVLITTDLLARGI-DVQ 330 (397)
T ss_pred EEeecccchhhhhHHHH--H--hhcCCceEEeecccccccc-chh
Confidence 89999999999999988 8 9999999999999999999 973
No 73
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.94 E-value=3.5e-26 Score=261.22 Aligned_cols=269 Identities=15% Similarity=0.128 Sum_probs=166.9
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCc----------
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTP---------- 785 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~---------- 785 (1034)
++++.||||||||++|++|++..+.+..+.+++|++|+++|+.|+++++...|+. .++.++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCch
Confidence 5899999999999999999998887767789999999999999999999987764 33333332210
Q ss_pred -----------cccccCCCcEEEECHhhHHHHHhc-ccc-cccc--CcccEEEEecccccCCCChhHHHHHHHHHHHhhh
Q psy13788 786 -----------DIQAISSASVIVTTPEKWDGVSRS-WQN-RNYV--QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISS 850 (1034)
Q Consensus 786 -----------~~~~~~~~~IiV~Tpe~l~~l~~~-~~~-~~~l--~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~ 850 (1034)
+......++|+|+||+++...+.. ... ...+ -..+++|+||+|.+.+.....+..++..+ .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l---~- 152 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVL---K- 152 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHH---H-
Confidence 000112478999999998655442 111 0111 12378999999999863222233333322 2
Q ss_pred ccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCccc-ccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCC
Q psy13788 851 YTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPV-PLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKP 929 (1034)
Q Consensus 851 ~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 929 (1034)
..+.|++++|||+|+ .+.+++...............+. ....+ .+.. ...........+...+.....+++
T Consensus 153 --~~~~~~i~~SATlp~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~l~~l~~~~~~~~~ 224 (358)
T TIGR01587 153 --DNDVPILLMSATLPK--FLKEYAEKIGYVEFNEPLDLKEERRFERH--RFIK--IESDKVGEISSLERLLEFIKKGGK 224 (358)
T ss_pred --HcCCCEEEEecCchH--HHHHHHhcCCCcccccCCCCccccccccc--ccee--eccccccCHHHHHHHHHHhhCCCe
Confidence 346789999999973 45555431110000000000000 00000 0000 000000011122233333345679
Q ss_pred eEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchh
Q psy13788 930 VMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLA 1009 (1034)
Q Consensus 930 ~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~ 1009 (1034)
+||||+|+++|+.++..|.+.... ..+..+||++++.+|..++...+.
T Consensus 225 ~lVf~~t~~~~~~~~~~L~~~~~~--------------------------------~~~~~~h~~~~~~~r~~~~~~~~~ 272 (358)
T TIGR01587 225 IAIIVNTVDRAQEFYQQLKENAPE--------------------------------EEIMLLHSRFTEKDRAKKEAELLE 272 (358)
T ss_pred EEEEECCHHHHHHHHHHHHhhcCC--------------------------------CeEEEEECCCCHHHHHHHHHHHHH
Confidence 999999999999999888764321 127899999999999664110022
Q ss_pred HhhcCCceEEEechhhhhccCCCC
Q psy13788 1010 ALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1010 ~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+|++|+.+|||||+++++|+ |++
T Consensus 273 ~f~~~~~~ilvaT~~~~~Gi-Di~ 295 (358)
T TIGR01587 273 EMKKNEKFVIVATQVIEASL-DIS 295 (358)
T ss_pred HhcCCCCeEEEECcchhcee-ccC
Confidence 39999999999999999999 985
No 74
>KOG0337|consensus
Probab=99.94 E-value=7.1e-27 Score=246.60 Aligned_cols=293 Identities=18% Similarity=0.198 Sum_probs=211.1
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC--CCeEEEEcCc
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP--EAKVVYIAPL 753 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~--~~~~lvi~Pt 753 (1034)
+|+.....++...+ |..|+|+|.+.+|.++ .+++++..|-||||||.||++|+++.+.... +.++++++||
T Consensus 27 gL~~~v~raI~kkg------~~~ptpiqRKTipliL-e~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 27 GLDYKVLRAIHKKG------FNTPTPIQRKTIPLIL-EGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCHHHHHHHHHhh------cCCCCchhccccccee-eccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 66666666666555 4559999999999999 8999999999999999999999999998743 6799999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEeccccc
Q psy13788 754 KALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 754 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l 830 (1034)
++|+.|..+-++ .+++..+++...+.|+...+.+. ..++|||++||+++..+.- .-...++.+.+||+||||.+
T Consensus 100 reLa~qtlkvvk-dlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~v--em~l~l~sveyVVfdEadrl 176 (529)
T KOG0337|consen 100 RELALQTLKVVK-DLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGV--EMTLTLSSVEYVVFDEADRL 176 (529)
T ss_pred HHHHHHHHHHHH-HhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeeh--heeccccceeeeeehhhhHH
Confidence 999999777665 68888888888888876665554 2479999999999865554 23356889999999999999
Q ss_pred CC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCc-
Q psy13788 831 GE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYC- 907 (1034)
Q Consensus 831 ~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~- 907 (1034)
.. +|..++..+++|+ +...|.++||||+|+. .++++ .|..++..+. ..++..+.......++
T Consensus 177 femgfqeql~e~l~rl-------~~~~QTllfSatlp~~lv~fak-aGl~~p~lVR-------ldvetkise~lk~~f~~ 241 (529)
T KOG0337|consen 177 FEMGFQEQLHEILSRL-------PESRQTLLFSATLPRDLVDFAK-AGLVPPVLVR-------LDVETKISELLKVRFFR 241 (529)
T ss_pred HhhhhHHHHHHHHHhC-------CCcceEEEEeccCchhhHHHHH-ccCCCCceEE-------eehhhhcchhhhhheee
Confidence 88 6888888887655 5566999999999862 23332 2322221111 1111111111111111
Q ss_pred hhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhc
Q psy13788 908 PRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFG 987 (1034)
Q Consensus 908 ~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~g 987 (1034)
.+.+.....+...+......++++|||.|+..++-+..-|... +.+
T Consensus 242 ~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~----------------------------------g~~ 287 (529)
T KOG0337|consen 242 VRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF----------------------------------GGE 287 (529)
T ss_pred eccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc----------------------------------CCC
Confidence 1111112223333444445568999999999998665444332 334
Q ss_pred hhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCC
Q psy13788 988 IGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 988 v~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Df 1032 (1034)
+..++|.|++.-|..-.. . |+.++..+||.||+++||+ |.
T Consensus 288 ~s~iysslD~~aRk~~~~--~--F~~~k~~~lvvTdvaaRG~-di 327 (529)
T KOG0337|consen 288 GSDIYSSLDQEARKINGR--D--FRGRKTSILVVTDVAARGL-DI 327 (529)
T ss_pred ccccccccChHhhhhccc--c--ccCCccceEEEehhhhccC-CC
Confidence 778999999999986544 4 9999999999999999999 96
No 75
>KOG0948|consensus
Probab=99.94 E-value=5.2e-28 Score=270.27 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=98.9
Q ss_pred ccccee-cchhH----HHHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHH
Q psy13788 103 KHGCYV-HIGIL----DVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVL 176 (1034)
Q Consensus 103 ~~g~~~-h~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~ 176 (1034)
++||++ |+|++ ++.+++.+.| .++++|+|+||++ |+|||| +|++...++|||+. ++|++..||.
T Consensus 446 ~RGIGIHHsGLLPIlKE~IEILFqEG-------LvKvLFATETFsi-GLNMPAkTVvFT~~rKfDG~~--fRwissGEYI 515 (1041)
T KOG0948|consen 446 RRGIGIHHSGLLPILKEVIEILFQEG-------LVKVLFATETFSI-GLNMPAKTVVFTAVRKFDGKK--FRWISSGEYI 515 (1041)
T ss_pred HhccccccccchHHHHHHHHHHHhcc-------HHHHHHhhhhhhh-ccCCcceeEEEeeccccCCcc--eeeecccceE
Confidence 689955 67777 5555554443 5699999999998 899999 89999999999875 6999999999
Q ss_pred HHhhccCCCCccccceEEEECCcccH-HHHHHHh-cCCcceecccccchHHHHhhhh
Q psy13788 177 QIFGRAGRPQYNTSGHATIITPHEKL-NHYLSLL-TNQIPIESNFVANLADNLNAEV 231 (1034)
Q Consensus 177 Qm~GRAGR~~~d~~G~~~i~~~~~~~-~~y~~~~-~~~~~i~s~l~~~~~~~ln~e~ 231 (1034)
||.|||||+|.|+.|.+|+|.+...- +.-..++ +.+.|+.|.|+-+|.+.||---
T Consensus 516 QMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLlR 572 (1041)
T KOG0948|consen 516 QMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLLR 572 (1041)
T ss_pred EecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHHH
Confidence 99999999999999999999998532 2334444 6778999999999999999754
No 76
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=9.2e-25 Score=274.97 Aligned_cols=273 Identities=14% Similarity=0.076 Sum_probs=178.0
Q ss_pred cccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhh
Q psy13788 692 SLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771 (1034)
Q Consensus 692 ~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~ 771 (1034)
+.+|+ .|+|+|.++++.++ .|+|++++||||+|||. |.+++...+.. ++.+++||+||++|+.|+++.+++. +..
T Consensus 75 ~~~G~-~pt~iQ~~~i~~il-~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-~g~~alIL~PTreLa~Qi~~~l~~l-~~~ 149 (1176)
T PRK09401 75 KKTGS-KPWSLQRTWAKRLL-LGESFAIIAPTGVGKTT-FGLVMSLYLAK-KGKKSYIIFPTRLLVEQVVEKLEKF-GEK 149 (1176)
T ss_pred HhcCC-CCcHHHHHHHHHHH-CCCcEEEEcCCCCCHHH-HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHHHHH-hhh
Confidence 34567 59999999999998 89999999999999996 44554444433 4789999999999999999999864 444
Q ss_pred cCCeEEEEcCCCCc--c-cc----c--cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC----------
Q psy13788 772 LKKKVVELTGDVTP--D-IQ----A--ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE---------- 832 (1034)
Q Consensus 772 ~~~~v~~~~g~~~~--~-~~----~--~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~---------- 832 (1034)
.+..+..+.|+... . .. . ...++|+|+||+++...+. .....+++++|+||||++++
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~----~l~~~~~~~lVvDEaD~~L~~~k~id~~l~ 225 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD----ELPKKKFDFVFVDDVDAVLKSSKNIDKLLY 225 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH----hccccccCEEEEEChHHhhhcccchhhHHH
Confidence 67777777665431 1 11 1 1358999999999876654 22345699999999999874
Q ss_pred --CCh-hHHHHHHHHHHH-------------hhh----ccCCCeEEEEEccCCCCH-H---HHHhHhcccCCceeecCCC
Q psy13788 833 --DRG-PVLEVIVSRVNF-------------ISS----YTKRNVRLVGLSTALANA-K---DLATWLNITKQGMYNFRPS 888 (1034)
Q Consensus 833 --~~~-~~~~~il~rl~~-------------l~~----~~~~~~~iv~lSATl~~~-~---~l~~~l~~~~~~~~~~~~~ 888 (1034)
+|. ..++.++..++. +.. ..+...|++++|||.++. . .+.+.++.... .+.
T Consensus 226 ~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~-----~~~ 300 (1176)
T PRK09401 226 LLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVG-----SPV 300 (1176)
T ss_pred hCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEec-----Ccc
Confidence 232 345444443321 111 112267899999999752 1 12222221110 011
Q ss_pred CcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHH---HHHHHHHHHHHHhccCCCCcccCCCh
Q psy13788 889 VRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQ---TRLTAIDLITILACETNPKMWVHTSD 965 (1034)
Q Consensus 889 ~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~---~~~~a~~L~~~~~~~~~~~~~~~~~~ 965 (1034)
.....+...+...+ .....+.+.+... +.++||||++++. |+.++..|...
T Consensus 301 ~~~rnI~~~yi~~~---------~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~--------------- 354 (1176)
T PRK09401 301 FYLRNIVDSYIVDE---------DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDL--------------- 354 (1176)
T ss_pred cccCCceEEEEEcc---------cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHC---------------
Confidence 10111221111110 1122334444444 3579999999877 77777766542
Q ss_pred HHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEe----chhhhhccCCCC
Q psy13788 966 AEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVIN----RSTSANGNFDFN 1033 (1034)
Q Consensus 966 ~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVa----T~~l~~Gv~Dfs 1033 (1034)
+..+..+||+| + +.+++ |++|+++|||| |++++||| |+-
T Consensus 355 -------------------gi~v~~~hg~l---~-~~l~~-----F~~G~~~VLVatas~tdv~aRGI-DiP 397 (1176)
T PRK09401 355 -------------------GINAELAISGF---E-RKFEK-----FEEGEVDVLVGVASYYGVLVRGI-DLP 397 (1176)
T ss_pred -------------------CCcEEEEeCcH---H-HHHHH-----HHCCCCCEEEEecCCCCceeecC-CCC
Confidence 22378899999 3 33444 99999999999 69999999 984
No 77
>KOG0351|consensus
Probab=99.93 E-value=2.6e-25 Score=269.08 Aligned_cols=279 Identities=18% Similarity=0.243 Sum_probs=213.1
Q ss_pred cccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 690 YESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 690 ~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
+...||...|+|-|.+|+..++ .|+++++.+|||+||++||++|++-. ++.+|||.|..+|+.++...+.+
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l-~Gkd~fvlmpTG~GKSLCYQlPA~l~-----~gitvVISPL~SLm~DQv~~L~~--- 326 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATL-SGKDCFVLMPTGGGKSLCYQLPALLL-----GGVTVVISPLISLMQDQVTHLSK--- 326 (941)
T ss_pred HHHHhccccCChhHHHHHHHHH-cCCceEEEeecCCceeeEeecccccc-----CCceEEeccHHHHHHHHHHhhhh---
Confidence 4556899999999999999888 89999999999999999999999865 67999999999999998887743
Q ss_pred hhcCCeEEEEcCCCCccccc-------c--CCCcEEEECHhhHHHHHhccccccccCc---ccEEEEecccccCC---CC
Q psy13788 770 ARLKKKVVELTGDVTPDIQA-------I--SSASVIVTTPEKWDGVSRSWQNRNYVQS---VALIIIDEIHLLGE---DR 834 (1034)
Q Consensus 770 ~~~~~~v~~~~g~~~~~~~~-------~--~~~~IiV~Tpe~l~~l~~~~~~~~~l~~---l~~lViDEaH~l~~---~~ 834 (1034)
.++....++++.....+. . ...+|+..|||++...-+-......+.. +.++|+||||++.. +|
T Consensus 327 --~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdF 404 (941)
T KOG0351|consen 327 --KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDF 404 (941)
T ss_pred --cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccc
Confidence 678888888877664322 1 2579999999998432221122223333 89999999999975 67
Q ss_pred hhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC--HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhh
Q psy13788 835 GPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN--AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAK 912 (1034)
Q Consensus 835 ~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~--~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 912 (1034)
++.|..+.. +....+ .++++++|||... .+|+.+.|++....++. .+..+.++...+..-.. ..
T Consensus 405 Rp~Yk~l~~----l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~sfnR~NL~yeV~~k~~-------~~ 470 (941)
T KOG0351|consen 405 RPSYKRLGL----LRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK--SSFNRPNLKYEVSPKTD-------KD 470 (941)
T ss_pred cHHHHHHHH----HHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec--ccCCCCCceEEEEeccC-------cc
Confidence 777765543 323333 4899999999865 58999999988776554 33334444444432111 11
Q ss_pred ccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhc
Q psy13788 913 MNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHH 992 (1034)
Q Consensus 913 ~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h 992 (1034)
....+...++...+..+.||||.+++.|+.++..|.+.+. ....||
T Consensus 471 ~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~----------------------------------~a~~YH 516 (941)
T KOG0351|consen 471 ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGK----------------------------------SAAFYH 516 (941)
T ss_pred chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhch----------------------------------hhHhhh
Confidence 2223456666777888999999999999999988876532 268999
Q ss_pred CCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCC
Q psy13788 993 AAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 993 ~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Df 1032 (1034)
+||++.+|+.|.+ . |-.++++|+|||=++++|| |.
T Consensus 517 AGl~~~~R~~Vq~--~--w~~~~~~VivATVAFGMGI-dK 551 (941)
T KOG0351|consen 517 AGLPPKERETVQK--A--WMSDKIRVIVATVAFGMGI-DK 551 (941)
T ss_pred cCCCHHHHHHHHH--H--HhcCCCeEEEEEeeccCCC-CC
Confidence 9999999999988 6 9999999999999999999 96
No 78
>KOG0352|consensus
Probab=99.93 E-value=2.5e-25 Score=234.47 Aligned_cols=279 Identities=19% Similarity=0.250 Sum_probs=195.3
Q ss_pred ccccccccCCC-ChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHH
Q psy13788 689 QYESLYKFSHF-NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVK 767 (1034)
Q Consensus 689 ~~~~~~~~~~~-~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~ 767 (1034)
.+++.||+..| ++.|.+|+..+.....||.|++|||+||++||++|.+-. +..+||+.|..+|+.++.+.+.+
T Consensus 10 aLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----~gITIV~SPLiALIkDQiDHL~~- 83 (641)
T KOG0352|consen 10 ALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----GGITIVISPLIALIKDQIDHLKR- 83 (641)
T ss_pred HHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----CCeEEEehHHHHHHHHHHHHHHh-
Confidence 34567887766 699999999999888999999999999999999999876 66999999999999999998875
Q ss_pred hhhhcCCeEEEEcCCCCccccc---------cCCCcEEEECHhhHHH-HHhc-cccccccCcccEEEEecccccCC---C
Q psy13788 768 FEARLKKKVVELTGDVTPDIQA---------ISSASVIVTTPEKWDG-VSRS-WQNRNYVQSVALIIIDEIHLLGE---D 833 (1034)
Q Consensus 768 ~~~~~~~~v~~~~g~~~~~~~~---------~~~~~IiV~Tpe~l~~-l~~~-~~~~~~l~~l~~lViDEaH~l~~---~ 833 (1034)
+.+++..+.+..+...+. .....++..|||+... .+.. .+....-..+.++|+||||++.. +
T Consensus 84 ----LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHD 159 (641)
T KOG0352|consen 84 ----LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHD 159 (641)
T ss_pred ----cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccc
Confidence 455555555544432221 2356899999998622 1111 11222335678999999999964 6
Q ss_pred ChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC--HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhh
Q psy13788 834 RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN--AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMA 911 (1034)
Q Consensus 834 ~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~--~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~ 911 (1034)
|+|.|..+-+ +.+.+ ..+..|+||||... .+|+...|.+..+--..-.|..|. ++- |...+.
T Consensus 160 FRPDYL~LG~----LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~-NLF----------YD~~~K 223 (641)
T KOG0352|consen 160 FRPDYLTLGS----LRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRD-NLF----------YDNHMK 223 (641)
T ss_pred cCcchhhhhh----HHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhh-hhh----------HHHHHH
Confidence 7777765432 32333 47789999999766 477887777665422222333332 111 111111
Q ss_pred hccHHHHHHHHhh----------------CCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhc
Q psy13788 912 KMNKPIYTAIKQH----------------SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNI 975 (1034)
Q Consensus 912 ~~~~~~~~~l~~~----------------~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i 975 (1034)
......+..+... ...+..||||.||++|+++|-.|...
T Consensus 224 ~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~------------------------- 278 (641)
T KOG0352|consen 224 SFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA------------------------- 278 (641)
T ss_pred HHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc-------------------------
Confidence 2222222221110 12356899999999999999776543
Q ss_pred CCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCC
Q psy13788 976 KDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 976 ~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Df 1032 (1034)
+.+...||+|+...+|..|.+ . |-+|++.|++||..+++|| |=
T Consensus 279 ---------Gi~A~AYHAGLK~~ERTeVQe--~--WM~~~~PvI~AT~SFGMGV-DK 321 (641)
T KOG0352|consen 279 ---------GIPAMAYHAGLKKKERTEVQE--K--WMNNEIPVIAATVSFGMGV-DK 321 (641)
T ss_pred ---------CcchHHHhcccccchhHHHHH--H--HhcCCCCEEEEEecccccc-CC
Confidence 234678999999999999988 6 9999999999999999999 83
No 79
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=1.4e-24 Score=278.41 Aligned_cols=280 Identities=16% Similarity=0.120 Sum_probs=182.9
Q ss_pred cccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 690 YESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 690 ~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
+++.+|| +|+++|.++++.++ .|++++++||||+|||++++++++.... ++.+++|++||++|+.|+++.++....
T Consensus 72 f~~~~G~-~pt~iQ~~~i~~il-~G~d~li~APTGsGKTl~~~~~al~~~~--~g~~aLVl~PTreLa~Qi~~~l~~l~~ 147 (1638)
T PRK14701 72 FEKITGF-EFWSIQKTWAKRIL-RGKSFSIVAPTGMGKSTFGAFIALFLAL--KGKKCYIILPTTLLVKQTVEKIESFCE 147 (1638)
T ss_pred HHHhhCC-CCCHHHHHHHHHHH-cCCCEEEEEcCCCCHHHHHHHHHHHHHh--cCCeEEEEECHHHHHHHHHHHHHHHHh
Confidence 3455688 59999999999998 8899999999999999977766654432 367999999999999999999986443
Q ss_pred hh-cCCeEEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC---------
Q psy13788 770 AR-LKKKVVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE--------- 832 (1034)
Q Consensus 770 ~~-~~~~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~--------- 832 (1034)
.. .++++..++|+.+...+. ...++|+|+||+++...+... . ..+++++|+||||+++.
T Consensus 148 ~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---~-~~~i~~iVVDEAD~ml~~~knid~~L 223 (1638)
T PRK14701 148 KANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---K-HLKFDFIFVDDVDAFLKASKNIDRSL 223 (1638)
T ss_pred hcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH---h-hCCCCEEEEECceeccccccccchhh
Confidence 31 246777888887755431 125899999999886655421 1 26789999999999964
Q ss_pred ---CChhHHHH----HHH---------------HHHHhhhccCCCeE-EEEEccCCCCHHHHHhHhcccCCceeecCCCC
Q psy13788 833 ---DRGPVLEV----IVS---------------RVNFISSYTKRNVR-LVGLSTALANAKDLATWLNITKQGMYNFRPSV 889 (1034)
Q Consensus 833 ---~~~~~~~~----il~---------------rl~~l~~~~~~~~~-iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~ 889 (1034)
+|.+.+.. ++. .+.......+...+ .+.+|||++...+....+.- .-.+......
T Consensus 224 ~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~--~l~f~v~~~~ 301 (1638)
T PRK14701 224 QLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRE--LLGFEVGSGR 301 (1638)
T ss_pred hcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhc--CeEEEecCCC
Confidence 56666653 221 11111112233444 67799999864444444421 1112111111
Q ss_pred ccc-ccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHH---HHHHHHHHHHHhccCCCCcccCCCh
Q psy13788 890 RPV-PLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQT---RLTAIDLITILACETNPKMWVHTSD 965 (1034)
Q Consensus 890 r~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~---~~~a~~L~~~~~~~~~~~~~~~~~~ 965 (1034)
... .+...+... . ... ...+.+.++.. +.++||||+|++.+ +.++..|.+.
T Consensus 302 ~~lr~i~~~yi~~------~-~~~-k~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~--------------- 356 (1638)
T PRK14701 302 SALRNIVDVYLNP------E-KII-KEHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLED--------------- 356 (1638)
T ss_pred CCCCCcEEEEEEC------C-HHH-HHHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHC---------------
Confidence 000 111111100 0 011 12344555554 46899999998864 5666655432
Q ss_pred HHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEec----hhhhhccCCCC
Q psy13788 966 AEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINR----STSANGNFDFN 1033 (1034)
Q Consensus 966 ~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT----~~l~~Gv~Dfs 1033 (1034)
+..+..+||+ |..+.+ . |++|+++||||| ++++||| |+.
T Consensus 357 -------------------Gi~a~~~h~~-----R~~~l~--~--F~~G~~~VLVaT~s~~gvaaRGI-DiP 399 (1638)
T PRK14701 357 -------------------GFKIELVSAK-----NKKGFD--L--FEEGEIDYLIGVATYYGTLVRGL-DLP 399 (1638)
T ss_pred -------------------CCeEEEecch-----HHHHHH--H--HHcCCCCEEEEecCCCCeeEecC-ccC
Confidence 2237889985 666655 5 999999999999 4899999 985
No 80
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.92 E-value=5.9e-24 Score=251.07 Aligned_cols=273 Identities=15% Similarity=0.200 Sum_probs=174.6
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
.|+++|.+|++.++ .+++.++++|||+|||+++...+ ..+......++||++||++|+.|+.+++.+.... ....+.
T Consensus 114 ~~r~~Q~~av~~~l-~~~~~il~apTGsGKT~i~~~l~-~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~-~~~~~~ 190 (501)
T PHA02558 114 EPHWYQYDAVYEGL-KNNRRLLNLPTSAGKSLIQYLLS-RYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLF-PREAMH 190 (501)
T ss_pred CCCHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHH-HHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccc-ccccee
Confidence 59999999999988 67789999999999999875533 3323333459999999999999999998753321 223343
Q ss_pred EEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeE
Q psy13788 778 ELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVR 857 (1034)
Q Consensus 778 ~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~ 857 (1034)
.+.|+.... .+.+|+|+||+++.... ...+++++++|+||||++.+ ..+..++..+ ++..+
T Consensus 191 ~i~~g~~~~----~~~~I~VaT~qsl~~~~-----~~~~~~~~~iIvDEaH~~~~---~~~~~il~~~-------~~~~~ 251 (501)
T PHA02558 191 KIYSGTAKD----TDAPIVVSTWQSAVKQP-----KEWFDQFGMVIVDECHLFTG---KSLTSIITKL-------DNCKF 251 (501)
T ss_pred EEecCcccC----CCCCEEEeeHHHHhhch-----hhhccccCEEEEEchhcccc---hhHHHHHHhh-------hccce
Confidence 444443322 35799999999985432 22467899999999999875 3455555332 33567
Q ss_pred EEEEccCCCCHHH----HHhHhcccCCceeecCC-----CCcccccEEE--EecCCC--------CCCchhh------hh
Q psy13788 858 LVGLSTALANAKD----LATWLNITKQGMYNFRP-----SVRPVPLEVH--ISGFPG--------KQYCPRM------AK 912 (1034)
Q Consensus 858 iv~lSATl~~~~~----l~~~l~~~~~~~~~~~~-----~~r~~~l~~~--~~~~~~--------~~~~~~~------~~ 912 (1034)
++|||||+.+.+. +..++|- -.+.... .....+.++. ...++. ..+.... ..
T Consensus 252 ~lGLTATp~~~~~~~~~~~~~fG~---i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (501)
T PHA02558 252 KFGLTGSLRDGKANILQYVGLFGD---IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTK 328 (501)
T ss_pred EEEEeccCCCccccHHHHHHhhCC---ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHH
Confidence 8999999976321 1223331 0111000 0000111111 111110 0111000 00
Q ss_pred ccHHHHHHHHhh-CCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhh
Q psy13788 913 MNKPIYTAIKQH-SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFH 991 (1034)
Q Consensus 913 ~~~~~~~~l~~~-~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~ 991 (1034)
.+..+...+... ..+.+++|||+++++|+.++..|.+.. ..+..+
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g----------------------------------~~v~~i 374 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVY----------------------------------DKVYYV 374 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcC----------------------------------CCEEEE
Confidence 111122222211 345789999999999998888776531 127899
Q ss_pred cCCCCHHHHHHhcccchhHhhcCCceEEEec-hhhhhccCCCCC
Q psy13788 992 HAAAEAAQSSALQMPKLAALSSKENQNVINR-STSANGNFDFNR 1034 (1034)
Q Consensus 992 h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT-~~l~~Gv~Dfs~ 1034 (1034)
||+|+.++|+.+.+ . |++|+.+||||| +++++|+ |+.+
T Consensus 375 ~G~~~~~eR~~i~~--~--~~~~~~~vLvaT~~~l~eG~-Dip~ 413 (501)
T PHA02558 375 SGEVDTEDRNEMKK--I--AEGGKGIIIVASYGVFSTGI-SIKN 413 (501)
T ss_pred eCCCCHHHHHHHHH--H--HhCCCCeEEEEEcceecccc-cccc
Confidence 99999999999888 7 999999999998 8999999 9853
No 81
>KOG0353|consensus
Probab=99.92 E-value=1.2e-24 Score=225.58 Aligned_cols=278 Identities=21% Similarity=0.267 Sum_probs=209.4
Q ss_pred cccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhh
Q psy13788 692 SLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771 (1034)
Q Consensus 692 ~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~ 771 (1034)
..|..+.|+|.|..+++..+ .+.++++..|||.||++||.+|++.. .+.+|+++|..+|++++.-.+++
T Consensus 88 ~~f~lekfrplq~~ain~~m-a~ed~~lil~tgggkslcyqlpal~a-----dg~alvi~plislmedqil~lkq----- 156 (695)
T KOG0353|consen 88 EQFHLEKFRPLQLAAINATM-AGEDAFLILPTGGGKSLCYQLPALCA-----DGFALVICPLISLMEDQILQLKQ----- 156 (695)
T ss_pred HHhhHHhcChhHHHHhhhhh-ccCceEEEEeCCCccchhhhhhHHhc-----CCceEeechhHHHHHHHHHHHHH-----
Confidence 34556679999999999998 89999999999999999999999876 78999999999999998888875
Q ss_pred cCCeEEEEcCCCCccccc---------cCCCcEEEECHhhHH---HHHhccccccccCcccEEEEecccccCC---CChh
Q psy13788 772 LKKKVVELTGDVTPDIQA---------ISSASVIVTTPEKWD---GVSRSWQNRNYVQSVALIIIDEIHLLGE---DRGP 836 (1034)
Q Consensus 772 ~~~~v~~~~g~~~~~~~~---------~~~~~IiV~Tpe~l~---~l~~~~~~~~~l~~l~~lViDEaH~l~~---~~~~ 836 (1034)
+|+....+....+.+... -....++..|||++. .++.+.........+.++-+||+|+... +|++
T Consensus 157 lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~ 236 (695)
T KOG0353|consen 157 LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRP 236 (695)
T ss_pred hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCc
Confidence 677777776655443211 134679999999983 3444444555567889999999999864 6777
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEEccCCCC--HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhcc
Q psy13788 837 VLEVIVSRVNFISSYTKRNVRLVGLSTALAN--AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMN 914 (1034)
Q Consensus 837 ~~~~il~rl~~l~~~~~~~~~iv~lSATl~~--~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 914 (1034)
.|..+- -++ .+ -++.++++++||..+ .+|....+++.. .+.|.......++...+..-++. .....
T Consensus 237 dy~~l~-ilk---rq-f~~~~iigltatatn~vl~d~k~il~ie~--~~tf~a~fnr~nl~yev~qkp~n-----~dd~~ 304 (695)
T KOG0353|consen 237 DYKALG-ILK---RQ-FKGAPIIGLTATATNHVLDDAKDILCIEA--AFTFRAGFNRPNLKYEVRQKPGN-----EDDCI 304 (695)
T ss_pred chHHHH-HHH---Hh-CCCCceeeeehhhhcchhhHHHHHHhHHh--hheeecccCCCCceeEeeeCCCC-----hHHHH
Confidence 776432 222 22 257789999999877 466777776654 34555555544555554432222 12223
Q ss_pred HHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCC
Q psy13788 915 KPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAA 994 (1034)
Q Consensus 915 ~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~ 994 (1034)
+.+...++..-.+...||||-|+++|+.++..|.+.... .+.||+.
T Consensus 305 edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~----------------------------------a~~yha~ 350 (695)
T KOG0353|consen 305 EDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIH----------------------------------AGAYHAN 350 (695)
T ss_pred HHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCcc----------------------------------ccccccc
Confidence 455566665556788999999999999999988765332 6789999
Q ss_pred CCHHHHHHhcccchhHhhcCCceEEEechhhhhccCC
Q psy13788 995 AEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFD 1031 (1034)
Q Consensus 995 ~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~D 1031 (1034)
|.+++|..+.+ - |..|+++|+|||-++++|+ |
T Consensus 351 lep~dks~~hq--~--w~a~eiqvivatvafgmgi-d 382 (695)
T KOG0353|consen 351 LEPEDKSGAHQ--G--WIAGEIQVIVATVAFGMGI-D 382 (695)
T ss_pred cCccccccccc--c--ccccceEEEEEEeeecccC-C
Confidence 99999999988 6 9999999999999999999 8
No 82
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.91 E-value=1.7e-23 Score=255.67 Aligned_cols=269 Identities=16% Similarity=0.181 Sum_probs=185.4
Q ss_pred HHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCC
Q psy13788 705 QIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVT 784 (1034)
Q Consensus 705 ~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~ 784 (1034)
+.+..+. ++++++++||||||||+++.++++.... .+.++++++|||++|.|.++++.+.++...|..++...+...
T Consensus 12 ~i~~~l~-~~~~vvv~A~TGSGKTt~~pl~lL~~~~--~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~ 88 (812)
T PRK11664 12 ELLTALK-TAPQVLLKAPTGAGKSTWLPLQLLQHGG--INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES 88 (812)
T ss_pred HHHHHHH-hCCCEEEEcCCCCCHHHHHHHHHHHcCC--cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc
Confidence 3445554 7789999999999999999999987532 246999999999999999999887777667777776655433
Q ss_pred ccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEeccccc-CC-CChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 785 PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL-GE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 785 ~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l-~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
.. ....+|+|+||+++..++. ....+.++++||+||+|.. .+ +.. +. ++ +.+....+.+.|+|+||
T Consensus 89 ~~---~~~t~I~v~T~G~Llr~l~---~d~~L~~v~~IIlDEaHER~l~~Dl~--L~-ll---~~i~~~lr~~lqlilmS 156 (812)
T PRK11664 89 KV---GPNTRLEVVTEGILTRMIQ---RDPELSGVGLVILDEFHERSLQADLA--LA-LL---LDVQQGLRDDLKLLIMS 156 (812)
T ss_pred cc---CCCCcEEEEChhHHHHHHh---hCCCcCcCcEEEEcCCCccccccchH--HH-HH---HHHHHhCCccceEEEEe
Confidence 21 2356899999999977765 2457899999999999973 22 221 11 11 11223345688999999
Q ss_pred cCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHH
Q psy13788 863 TALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRL 942 (1034)
Q Consensus 863 ATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~ 942 (1034)
||++. ..+.++++-. .++ ....+..+++.++...+...+.. ......+...+.. ..+.+||||+++++++.
T Consensus 157 ATl~~-~~l~~~~~~~--~~I--~~~gr~~pV~~~y~~~~~~~~~~--~~v~~~l~~~l~~--~~g~iLVFlpg~~ei~~ 227 (812)
T PRK11664 157 ATLDN-DRLQQLLPDA--PVI--VSEGRSFPVERRYQPLPAHQRFD--EAVARATAELLRQ--ESGSLLLFLPGVGEIQR 227 (812)
T ss_pred cCCCH-HHHHHhcCCC--CEE--EecCccccceEEeccCchhhhHH--HHHHHHHHHHHHh--CCCCEEEEcCCHHHHHH
Confidence 99975 4567766421 122 22233445555544332221110 0111112222222 35789999999999999
Q ss_pred HHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEec
Q psy13788 943 TAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINR 1022 (1034)
Q Consensus 943 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT 1022 (1034)
++..|...... +..|..+||+|+.++|+.+.+ . |++|+.+|||||
T Consensus 228 l~~~L~~~~~~-------------------------------~~~v~~Lhg~l~~~eq~~~~~--~--~~~G~rkVlvAT 272 (812)
T PRK11664 228 VQEQLASRVAS-------------------------------DVLLCPLYGALSLAEQQKAIL--P--APAGRRKVVLAT 272 (812)
T ss_pred HHHHHHHhccC-------------------------------CceEEEeeCCCCHHHHHHHhc--c--ccCCCeEEEEec
Confidence 99888653211 112778999999999988877 6 999999999999
Q ss_pred hhhhhccCCCC
Q psy13788 1023 STSANGNFDFN 1033 (1034)
Q Consensus 1023 ~~l~~Gv~Dfs 1033 (1034)
+++++|| |+.
T Consensus 273 nIAErsL-tIp 282 (812)
T PRK11664 273 NIAETSL-TIE 282 (812)
T ss_pred chHHhcc-ccc
Confidence 9999999 985
No 83
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.91 E-value=3.7e-23 Score=252.03 Aligned_cols=269 Identities=15% Similarity=0.194 Sum_probs=186.3
Q ss_pred HHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCC
Q psy13788 705 QIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVT 784 (1034)
Q Consensus 705 ~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~ 784 (1034)
+.+..+. ++.+++++||||||||+++.++++.... .+.+++++.|+|++|.|.++++.+.++...|..++...+...
T Consensus 9 ~i~~~l~-~~~~vIi~a~TGSGKTT~vpl~lL~~~~--~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~ 85 (819)
T TIGR01970 9 ALRDALA-AHPQVVLEAPPGAGKSTAVPLALLDAPG--IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN 85 (819)
T ss_pred HHHHHHH-cCCcEEEECCCCCCHHHHHHHHHHHhhc--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc
Confidence 4445554 7889999999999999999999997753 357999999999999999999987777656666665444322
Q ss_pred ccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccc-cCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 785 PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHL-LGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 785 ~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~-l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
....+.+|+|+||+++..++.. ...+.++++||+||+|. ..+ +++-.+ +.. +....+.+.|+|+||
T Consensus 86 ---~~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl~L~l---l~~---i~~~lr~dlqlIlmS 153 (819)
T TIGR01970 86 ---KVSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADLGLAL---ALD---VQSSLREDLKILAMS 153 (819)
T ss_pred ---ccCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccchHHHH---HHH---HHHhcCCCceEEEEe
Confidence 1224579999999999776652 45689999999999994 444 443222 111 112345688999999
Q ss_pred cCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHH
Q psy13788 863 TALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRL 942 (1034)
Q Consensus 863 ATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~ 942 (1034)
||++. ..+.++++-. .++. ...+..++++.+.......+. ...+...+...+.. ..+++||||+++++++.
T Consensus 154 ATl~~-~~l~~~l~~~--~vI~--~~gr~~pVe~~y~~~~~~~~~--~~~v~~~l~~~l~~--~~g~iLVFlpg~~eI~~ 224 (819)
T TIGR01970 154 ATLDG-ERLSSLLPDA--PVVE--SEGRSFPVEIRYLPLRGDQRL--EDAVSRAVEHALAS--ETGSILVFLPGQAEIRR 224 (819)
T ss_pred CCCCH-HHHHHHcCCC--cEEE--ecCcceeeeeEEeecchhhhH--HHHHHHHHHHHHHh--cCCcEEEEECCHHHHHH
Confidence 99975 3467776521 1222 223444555544332211110 01111122222322 24689999999999999
Q ss_pred HHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEec
Q psy13788 943 TAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINR 1022 (1034)
Q Consensus 943 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT 1022 (1034)
++..|.+.+.. +..|..+||+|++++|..+.+ . |++|+.+|||||
T Consensus 225 l~~~L~~~~~~-------------------------------~~~v~pLHg~L~~~eq~~~~~--~--~~~G~rkVlVAT 269 (819)
T TIGR01970 225 VQEQLAERLDS-------------------------------DVLICPLYGELSLAAQDRAIK--P--DPQGRRKVVLAT 269 (819)
T ss_pred HHHHHHhhcCC-------------------------------CcEEEEecCCCCHHHHHHHHh--h--cccCCeEEEEec
Confidence 98888653210 123788999999999988877 6 999999999999
Q ss_pred hhhhhccCCCC
Q psy13788 1023 STSANGNFDFN 1033 (1034)
Q Consensus 1023 ~~l~~Gv~Dfs 1033 (1034)
+++++|| |+.
T Consensus 270 nIAErgI-tIp 279 (819)
T TIGR01970 270 NIAETSL-TIE 279 (819)
T ss_pred chHhhcc-ccc
Confidence 9999999 985
No 84
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.91 E-value=3.5e-23 Score=261.26 Aligned_cols=267 Identities=13% Similarity=0.056 Sum_probs=172.6
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeE-
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKV- 776 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v- 776 (1034)
.|+|+|.++++.++ .|++++++||||+|||. |.+|+...+.. .+.+++|++||++|+.|+++.+.+... ..++.+
T Consensus 78 ~p~~iQ~~~i~~il-~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-~g~~vLIL~PTreLa~Qi~~~l~~l~~-~~~i~~~ 153 (1171)
T TIGR01054 78 EPWSIQKMWAKRVL-RGDSFAIIAPTGVGKTT-FGLAMSLFLAK-KGKRCYIILPTTLLVIQVAEKISSLAE-KAGVGTV 153 (1171)
T ss_pred CCcHHHHHHHHHHh-CCCeEEEECCCCCCHHH-HHHHHHHHHHh-cCCeEEEEeCHHHHHHHHHHHHHHHHH-hcCCcee
Confidence 59999999999998 88999999999999997 66666655543 378999999999999999999986544 355544
Q ss_pred --EEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC------------CCh
Q psy13788 777 --VELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE------------DRG 835 (1034)
Q Consensus 777 --~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~------------~~~ 835 (1034)
+.++|+.+...+. ..+++|+|+||+++...+.... .+++++|+||||.+++ +|.
T Consensus 154 ~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~~~k~vd~il~llGF~ 228 (1171)
T TIGR01054 154 NIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLKASKNVDKLLKLLGFS 228 (1171)
T ss_pred eeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhhccccHHHHHHHcCCC
Confidence 3467877654321 1358999999999876655311 1799999999999975 233
Q ss_pred h-HHHHHHHHHH---------------HhhhccCCCe--EEEEEccCC-CCHH--H-HHhHhcccCCceeecCCCCc-cc
Q psy13788 836 P-VLEVIVSRVN---------------FISSYTKRNV--RLVGLSTAL-ANAK--D-LATWLNITKQGMYNFRPSVR-PV 892 (1034)
Q Consensus 836 ~-~~~~il~rl~---------------~l~~~~~~~~--~iv~lSATl-~~~~--~-l~~~l~~~~~~~~~~~~~~r-~~ 892 (1034)
. .++.++..++ .+....+.+. +++++|||. |... . +.+.++. ....... .-
T Consensus 229 ~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~------~v~~~~~~~r 302 (1171)
T TIGR01054 229 EELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGF------EVGGGSDTLR 302 (1171)
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccce------EecCcccccc
Confidence 3 2344332211 1111223333 367789994 4321 1 1111111 1111110 01
Q ss_pred ccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecCh---HHHHHHHHHHHHHHhccCCCCcccCCChHHHH
Q psy13788 893 PLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSR---RQTRLTAIDLITILACETNPKMWVHTSDAEMD 969 (1034)
Q Consensus 893 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~---~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~ 969 (1034)
.+........ .. ...+.+.++.. +.++||||+++ +.|+.++..|.+.
T Consensus 303 ~I~~~~~~~~-----~~----~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~------------------- 352 (1171)
T TIGR01054 303 NVVDVYVEDE-----DL----KETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENH------------------- 352 (1171)
T ss_pred ceEEEEEecc-----cH----HHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhC-------------------
Confidence 1111111100 00 12234445444 35799999999 8888888777542
Q ss_pred HHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEe----chhhhhccCCCC
Q psy13788 970 NIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVIN----RSTSANGNFDFN 1033 (1034)
Q Consensus 970 ~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVa----T~~l~~Gv~Dfs 1033 (1034)
++.+..+||+++. + +.+ . |++|+++|||| |++++||| |+-
T Consensus 353 ---------------g~~a~~lhg~~~~---~-~l~--~--Fr~G~~~vLVata~~tdv~aRGI-Dip 396 (1171)
T TIGR01054 353 ---------------GVKAVAYHATKPK---E-DYE--K--FAEGEIDVLIGVASYYGTLVRGL-DLP 396 (1171)
T ss_pred ---------------CceEEEEeCCCCH---H-HHH--H--HHcCCCCEEEEeccccCcccccC-CCC
Confidence 2237899999973 2 333 3 99999999999 59999999 985
No 85
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.91 E-value=6.7e-23 Score=243.93 Aligned_cols=275 Identities=17% Similarity=0.165 Sum_probs=177.6
Q ss_pred hhHHHHHHHHhcCCCcEEEEcCCCChhhHH---------HHHHHHHHHH----hCCCCeEEEEcCcHHHHHHHHHHHHHH
Q psy13788 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIA---------AEITCFRVFK----QCPEAKVVYIAPLKALVKERVADWKVK 767 (1034)
Q Consensus 701 ~~Q~~ai~~l~~~~~~vll~apTGsGKT~~---------~~l~il~~l~----~~~~~~~lvi~Pt~~L~~q~~~~~~~~ 767 (1034)
.+|.++++.+. +++++++.|+||||||.+ |++|.+..+. .....++++++||++||.|...++.+.
T Consensus 167 ~iQ~qil~~i~-~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 167 DVQLKIFEAWI-SRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHH-hCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 48999999997 899999999999999987 4444554442 223579999999999999988888765
Q ss_pred hhh--hcCCeEEEEcCCCCcc--ccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHH
Q psy13788 768 FEA--RLKKKVVELTGDVTPD--IQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVS 843 (1034)
Q Consensus 768 ~~~--~~~~~v~~~~g~~~~~--~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~ 843 (1034)
.+. ..+.++....|+.... .......+|+++|+.. ....+.++++||+||||.+.. .+..+..++.
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~-~~DllL~llk 315 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQ-IGDIIIAVAR 315 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCcc-chhHHHHHHH
Confidence 542 2356677788887632 1123367999999752 112478899999999999865 2333333332
Q ss_pred HHHHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCC--chhhhhccHHHHHH
Q psy13788 844 RVNFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQY--CPRMAKMNKPIYTA 920 (1034)
Q Consensus 844 rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~ 920 (1034)
.+ .+...|+++||||++. .+.+.++++- ...+... .....+++........... ..........+...
T Consensus 316 ~~------~~~~rq~ILmSATl~~dv~~l~~~~~~--p~~I~I~-grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~ 386 (675)
T PHA02653 316 KH------IDKIRSLFLMTATLEDDRDRIKEFFPN--PAFVHIP-GGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTA 386 (675)
T ss_pred Hh------hhhcCEEEEEccCCcHhHHHHHHHhcC--CcEEEeC-CCcCCCeEEEEeecCcccccchhhhHHHHHHHHHH
Confidence 11 1223489999999974 5667777752 2222222 1112344444332111000 00001111223333
Q ss_pred HHhh--CCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHH
Q psy13788 921 IKQH--SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAA 998 (1034)
Q Consensus 921 l~~~--~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~ 998 (1034)
+... ..++++||||+++++|+.+++.|.+... +..+..+||+|++.
T Consensus 387 L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~--------------------------------~~~v~~LHG~Lsq~ 434 (675)
T PHA02653 387 LKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP--------------------------------IYDFYIIHGKVPNI 434 (675)
T ss_pred HHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC--------------------------------CceEEeccCCcCHH
Confidence 3322 2346899999999999999888765321 12278899999986
Q ss_pred HHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 999 QSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 999 ~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+ +.+.+ . |++|+.+|||||+++++|| |+.
T Consensus 435 e-q~l~~--f--f~~gk~kILVATdIAERGI-DIp 463 (675)
T PHA02653 435 D-EILEK--V--YSSKNPSIIISTPYLESSV-TIR 463 (675)
T ss_pred H-HHHHH--H--hccCceeEEeccChhhccc-ccc
Confidence 3 33333 2 3789999999999999999 985
No 86
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=1e-22 Score=222.14 Aligned_cols=170 Identities=24% Similarity=0.296 Sum_probs=133.2
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
+++.+|.......+ .+|.+++.|||-|||+++.+-+...+.+.++ ++|+++||+-|+.|+++.+.+.++- ..-.++
T Consensus 15 e~R~YQ~~i~a~al--~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~i-p~~~i~ 90 (542)
T COG1111 15 EPRLYQLNIAAKAL--FKNTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGI-PEDEIA 90 (542)
T ss_pred cHHHHHHHHHHHHh--hcCeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCC-Chhhee
Confidence 48999999888776 3599999999999999999999999988766 9999999999999999988765442 344688
Q ss_pred EEcCCCCccccc--cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCC
Q psy13788 778 ELTGDVTPDIQA--ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRN 855 (1034)
Q Consensus 778 ~~~g~~~~~~~~--~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~ 855 (1034)
.++|..+++.+. +...+|+|+||+.+.+=+. .+...+.++.++|+||||+--.++ .|-.+.+.. .....+
T Consensus 91 ~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~--~Grid~~dv~~lifDEAHRAvGny--AYv~Va~~y----~~~~k~ 162 (542)
T COG1111 91 ALTGEVRPEEREELWAKKKVFVATPQVVENDLK--AGRIDLDDVSLLIFDEAHRAVGNY--AYVFVAKEY----LRSAKN 162 (542)
T ss_pred eecCCCChHHHHHHHhhCCEEEeccHHHHhHHh--cCccChHHceEEEechhhhccCcc--hHHHHHHHH----HHhccC
Confidence 999999887554 6789999999999854444 467788999999999999975432 333333322 124567
Q ss_pred eEEEEEccCCCC----HHHHHhHhcccC
Q psy13788 856 VRLVGLSTALAN----AKDLATWLNITK 879 (1034)
Q Consensus 856 ~~iv~lSATl~~----~~~l~~~l~~~~ 879 (1034)
+++++||||+.. ...+.+-||+..
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~ 190 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEK 190 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcce
Confidence 889999999987 355666677654
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.89 E-value=5.4e-22 Score=241.56 Aligned_cols=291 Identities=13% Similarity=0.163 Sum_probs=177.7
Q ss_pred CCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhc-CCe
Q psy13788 697 SHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARL-KKK 775 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~-~~~ 775 (1034)
..|+|+|..+.... .++..+++.||||+|||.+++.++.+.+......+++|..||+++++|+++++.+.+.+.. ...
T Consensus 285 ~~p~p~Q~~~~~~~-~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 285 YQPRQLQTLVDALP-LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCChHHHHHHHhhc-cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35999999885433 2566799999999999999998888766665568999999999999999999886554432 245
Q ss_pred EEEEcCCCCccc-----------------------ccc-------CCCcEEEECHhhHH-HHHhccccccccCcc----c
Q psy13788 776 VVELTGDVTPDI-----------------------QAI-------SSASVIVTTPEKWD-GVSRSWQNRNYVQSV----A 820 (1034)
Q Consensus 776 v~~~~g~~~~~~-----------------------~~~-------~~~~IiV~Tpe~l~-~l~~~~~~~~~l~~l----~ 820 (1034)
+...+|...... ..+ --++|+|||++++. ..+. ....+++.+ +
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~--~kh~~lR~~~La~s 441 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLP--VKHRFIRGFGLGRS 441 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHc--cchHHHHHHhhccC
Confidence 666666432110 001 12699999999984 3333 122233333 4
Q ss_pred EEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH--HHHHhHhcccCC----cee---ecCCCC--
Q psy13788 821 LIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA--KDLATWLNITKQ----GMY---NFRPSV-- 889 (1034)
Q Consensus 821 ~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~--~~l~~~l~~~~~----~~~---~~~~~~-- 889 (1034)
+|||||+|.+.......+..++..+. ....++|+||||+|.. +.+.+-.+.... .-| ......
T Consensus 442 vvIiDEVHAyD~ym~~lL~~~L~~l~------~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~ 515 (878)
T PRK09694 442 VLIVDEVHAYDAYMYGLLEAVLKAQA------QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGA 515 (878)
T ss_pred eEEEechhhCCHHHHHHHHHHHHHHH------hcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccc
Confidence 79999999986433334444443321 2356799999999862 233332221100 000 000000
Q ss_pred c-----------ccccEEEEecCCCCCCchhhhhccHHHHHHHH-hhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCC
Q psy13788 890 R-----------PVPLEVHISGFPGKQYCPRMAKMNKPIYTAIK-QHSPEKPVMIFVSSRRQTRLTAIDLITILACETNP 957 (1034)
Q Consensus 890 r-----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~ 957 (1034)
. +.+..+.+........ .....+.+.+. ....+++++|||||++.|+.+++.|.+....
T Consensus 516 ~~~~~~~~~~~~~~~~~v~v~~~~~~~~-----~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~---- 586 (878)
T PRK09694 516 QRFDLSAHPEQLPARFTIQLEPICLADM-----LPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNT---- 586 (878)
T ss_pred eeeeccccccccCcceEEEEEeeccccc-----cCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCC----
Confidence 0 0111111110000000 00122333332 3346789999999999999999988754211
Q ss_pred CcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHh-hcCC---ceEEEechhhhhccCCCC
Q psy13788 958 KMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAAL-SSKE---NQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 958 ~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f-~~g~---i~VLVaT~~l~~Gv~Dfs 1033 (1034)
...+.++||+++..+|+.+|+..+..| ++|+ .+|||||+++++|| |++
T Consensus 587 ---------------------------~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GL-DId 638 (878)
T PRK09694 587 ---------------------------QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSL-DLD 638 (878)
T ss_pred ---------------------------CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhhee-ecC
Confidence 012789999999999954433112227 6666 47999999999999 985
No 88
>KOG0354|consensus
Probab=99.88 E-value=2e-21 Score=224.76 Aligned_cols=159 Identities=23% Similarity=0.375 Sum_probs=117.9
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
.+|.+|.+.....+ ++|++|++|||+|||++|...++.++...++.++|+++|++-|+.|+...+.. ++. +..+.
T Consensus 62 ~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~-~~~--~~~~T 136 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSI-YLI--PYSVT 136 (746)
T ss_pred cccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhh-ccC--cccce
Confidence 38999999988776 89999999999999999999999999999999999999999999999855543 332 13333
Q ss_pred EEcCC-CCccc--cccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCC
Q psy13788 778 ELTGD-VTPDI--QAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKR 854 (1034)
Q Consensus 778 ~~~g~-~~~~~--~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~ 854 (1034)
...|| .+... ......+|+++||+.+..-+...... .+..+.++||||||+-... ..|..++..+... ...
T Consensus 137 ~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~-~ls~fs~iv~DE~Hra~kn--~~Y~~Vmr~~l~~---k~~ 210 (746)
T KOG0354|consen 137 GQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHD-ELSDFSLIVFDECHRTSKN--HPYNNIMREYLDL---KNQ 210 (746)
T ss_pred eeccCccCCCchhhhhcccceEEeChHhhhhhccccccc-ccceEEEEEEccccccccc--ccHHHHHHHHHHh---hhc
Confidence 34444 33222 22467899999999996655543222 2788999999999997542 3445555333222 122
Q ss_pred CeEEEEEccCCCC
Q psy13788 855 NVRLVGLSTALAN 867 (1034)
Q Consensus 855 ~~~iv~lSATl~~ 867 (1034)
..|++|||||+.+
T Consensus 211 ~~qILgLTASpG~ 223 (746)
T KOG0354|consen 211 GNQILGLTASPGS 223 (746)
T ss_pred cccEEEEecCCCc
Confidence 3399999999986
No 89
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.4e-22 Score=241.38 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=93.8
Q ss_pred cccc-eecchhHH-----HHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhH
Q psy13788 103 KHGC-YVHIGILD-----VLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDV 175 (1034)
Q Consensus 103 ~~g~-~~h~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~ 175 (1034)
.+|+ .||+|+|. ++++|..+ .+++.|+|+|+++ |+|||| +||+.+..+||+. +++++++.||
T Consensus 444 ~RGiavHH~GlLP~~K~~vE~Lfq~G--------LvkvvFaTeT~s~-GiNmPartvv~~~l~K~dG~--~~r~L~~gEy 512 (1041)
T COG4581 444 LRGIAVHHAGLLPAIKELVEELFQEG--------LVKVVFATETFAI-GINMPARTVVFTSLSKFDGN--GHRWLSPGEY 512 (1041)
T ss_pred hhhhhhhccccchHHHHHHHHHHhcc--------ceeEEeehhhhhh-hcCCcccceeeeeeEEecCC--ceeecChhHH
Confidence 4778 77889982 33444333 6699999999997 899999 8999999999965 4699999999
Q ss_pred HHHhhccCCCCccccceEEEECCccc--HHHHHHH-hcCCcceecccccchHHHHhhhh
Q psy13788 176 LQIFGRAGRPQYNTSGHATIITPHEK--LNHYLSL-LTNQIPIESNFVANLADNLNAEV 231 (1034)
Q Consensus 176 ~Qm~GRAGR~~~d~~G~~~i~~~~~~--~~~y~~~-~~~~~~i~s~l~~~~~~~ln~e~ 231 (1034)
+||.|||||.|+|+.|.+|++..... ...-..+ .+.++|..|+|...|.+.+|---
T Consensus 513 ~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~milnll~ 571 (1041)
T COG4581 513 TQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILNLLR 571 (1041)
T ss_pred HHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHHHhhhh
Confidence 99999999999999999999955421 1111222 26779999999999999988754
No 90
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=4e-21 Score=227.36 Aligned_cols=268 Identities=15% Similarity=0.215 Sum_probs=170.3
Q ss_pred CChhHHHHHHHHhcCC--CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeE
Q psy13788 699 FNPIQTQIFHCLYHTD--NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKV 776 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~--~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v 776 (1034)
++|+|.+++..++..+ +..++++|||+|||++++..+... +.++|||||+..|+.||.+++.+.+. .....+
T Consensus 256 LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~-l~~~~I 329 (732)
T TIGR00603 256 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWST-IDDSQI 329 (732)
T ss_pred cCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcC-CCCceE
Confidence 8999999999988555 479999999999999988766543 56899999999999999998886432 133566
Q ss_pred EEEcCCCCccccccCCCcEEEECHhhHHHHHhccc----ccccc--CcccEEEEecccccCCCChhHHHHHHHHHHHhhh
Q psy13788 777 VELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQ----NRNYV--QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISS 850 (1034)
Q Consensus 777 ~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~----~~~~l--~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~ 850 (1034)
..++|+..... ....+|+|+|++++.....+.. ....+ ...+++|+||||++.+ ..+..++..+
T Consensus 330 ~~~tg~~k~~~--~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---~~fr~il~~l----- 399 (732)
T TIGR00603 330 CRFTSDAKERF--HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---AMFRRVLTIV----- 399 (732)
T ss_pred EEEecCccccc--ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---HHHHHHHHhc-----
Confidence 77777543321 2347899999998743222100 00112 4678999999999874 4455554332
Q ss_pred ccCCCeEEEEEccCCCCHH----HHHhHhcccCCceeecCC-----CCcccccEEE--EecCCCCC---C-------chh
Q psy13788 851 YTKRNVRLVGLSTALANAK----DLATWLNITKQGMYNFRP-----SVRPVPLEVH--ISGFPGKQ---Y-------CPR 909 (1034)
Q Consensus 851 ~~~~~~~iv~lSATl~~~~----~l~~~l~~~~~~~~~~~~-----~~r~~~l~~~--~~~~~~~~---~-------~~~ 909 (1034)
. ....+|||||+...+ ++...+|. .+|.... ...-.+.+.. ..+..... | ...
T Consensus 400 --~-a~~RLGLTATP~ReD~~~~~L~~LiGP---~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~ 473 (732)
T TIGR00603 400 --Q-AHCKLGLTATLVREDDKITDLNFLIGP---KLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRML 473 (732)
T ss_pred --C-cCcEEEEeecCcccCCchhhhhhhcCC---eeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhH
Confidence 1 234699999987532 22222221 1222110 0000111111 01111000 0 001
Q ss_pred hhhccHHHHH----HHHhh-CCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHh
Q psy13788 910 MAKMNKPIYT----AIKQH-SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTI 984 (1034)
Q Consensus 910 ~~~~~~~~~~----~l~~~-~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l 984 (1034)
...++...+. .+..+ ..+.++||||++..++..++..|
T Consensus 474 l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L------------------------------------- 516 (732)
T TIGR00603 474 LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL------------------------------------- 516 (732)
T ss_pred HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-------------------------------------
Confidence 1122222222 23333 26779999999998887776644
Q ss_pred hhchhhhcCCCCHHHHHHhcccchhHhhcC-CceEEEechhhhhccCCC
Q psy13788 985 AFGIGFHHAAAEAAQSSALQMPKLAALSSK-ENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 985 ~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g-~i~VLVaT~~l~~Gv~Df 1032 (1034)
++.++||+++..+|+.+.+ . |++| .+++||+|+++++|+ |+
T Consensus 517 --~~~~I~G~ts~~ER~~il~--~--Fr~~~~i~vLv~SkVgdeGI-Dl 558 (732)
T TIGR00603 517 --GKPFIYGPTSQQERMQILQ--N--FQHNPKVNTIFLSKVGDTSI-DL 558 (732)
T ss_pred --CCceEECCCCHHHHHHHHH--H--HHhCCCccEEEEeccccccc-CC
Confidence 1456899999999999977 6 9875 889999999999999 97
No 91
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.87 E-value=4.4e-21 Score=218.67 Aligned_cols=277 Identities=17% Similarity=0.255 Sum_probs=196.7
Q ss_pred cccccccCCCChhHHHHHHHHhc---C--CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHH
Q psy13788 690 YESLYKFSHFNPIQTQIFHCLYH---T--DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADW 764 (1034)
Q Consensus 690 ~~~~~~~~~~~~~Q~~ai~~l~~---~--~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~ 764 (1034)
+.+..+|+ +|..|.+++..|.. + ..+=++++.-|||||++++++++..+.. |.++..++||--||+|.++.+
T Consensus 255 ~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--G~Q~ALMAPTEILA~QH~~~~ 331 (677)
T COG1200 255 FLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--GYQAALMAPTEILAEQHYESL 331 (677)
T ss_pred HHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--CCeeEEeccHHHHHHHHHHHH
Confidence 33445777 99999999998863 1 2367899999999999999999999876 899999999999999999999
Q ss_pred HHHhhhhcCCeEEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhH
Q psy13788 765 KVKFEARLKKKVVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPV 837 (1034)
Q Consensus 765 ~~~~~~~~~~~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~ 837 (1034)
.+.|.+ +|+++..++|......+. ....+|+|+|..-+ +....+.++.++|+||=|+.+ -.
T Consensus 332 ~~~l~~-~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-------Qd~V~F~~LgLVIiDEQHRFG----V~ 399 (677)
T COG1200 332 RKWLEP-LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-------QDKVEFHNLGLVIIDEQHRFG----VH 399 (677)
T ss_pred HHHhhh-cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-------hcceeecceeEEEEecccccc----HH
Confidence 998887 889999999987765443 23589999998644 345568999999999999965 22
Q ss_pred HHHHHHHHHHhhhccCC-CeEEEEEccCCC-CHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccH
Q psy13788 838 LEVIVSRVNFISSYTKR-NVRLVGLSTALA-NAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNK 915 (1034)
Q Consensus 838 ~~~il~rl~~l~~~~~~-~~~iv~lSATl~-~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 915 (1034)
-+..+ ..... .+.++.||||+- ..-.+..+-.++-..+-. -|..| .|+....... ....
T Consensus 400 QR~~L-------~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdE-lP~GR-kpI~T~~i~~----------~~~~ 460 (677)
T COG1200 400 QRLAL-------REKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDE-LPPGR-KPITTVVIPH----------ERRP 460 (677)
T ss_pred HHHHH-------HHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhcc-CCCCC-CceEEEEecc----------ccHH
Confidence 22222 11223 578999999954 344444443333332222 23332 2444433321 1122
Q ss_pred HHHHHHH-hhCCCCCeEEEecChHHHHHHH----HHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHh-hhchh
Q psy13788 916 PIYTAIK-QHSPEKPVMIFVSSRRQTRLTA----IDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTI-AFGIG 989 (1034)
Q Consensus 916 ~~~~~l~-~~~~~~~~lVF~~s~~~~~~~a----~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l-~~gv~ 989 (1034)
.+++.+. +...+.++.+.|+-+++.+.+- .++.+. |+..+ .+.|+
T Consensus 461 ~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~-----------------------------L~~~~~~~~vg 511 (677)
T COG1200 461 EVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEE-----------------------------LKSFLPELKVG 511 (677)
T ss_pred HHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHH-----------------------------HHHHcccceeE
Confidence 3344332 3346889999999988776322 222111 11112 23499
Q ss_pred hhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 990 FHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 990 ~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
++||.|++++++.|++ . |++|+++|||||.+.+.|| |+-|
T Consensus 512 L~HGrm~~~eKd~vM~--~--Fk~~e~~ILVaTTVIEVGV-dVPn 551 (677)
T COG1200 512 LVHGRMKPAEKDAVME--A--FKEGEIDILVATTVIEVGV-DVPN 551 (677)
T ss_pred EEecCCChHHHHHHHH--H--HHcCCCcEEEEeeEEEecc-cCCC
Confidence 9999999999999988 7 9999999999999999999 9754
No 92
>PRK13766 Hef nuclease; Provisional
Probab=99.86 E-value=1.4e-20 Score=236.08 Aligned_cols=158 Identities=26% Similarity=0.330 Sum_probs=119.5
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
+++++|.+++..+++ + |+++++|||+|||+++.+++...+. .++.++||++||++|+.|+.+.+++.++. .+.++.
T Consensus 15 ~~r~yQ~~~~~~~l~-~-n~lv~~ptG~GKT~~a~~~i~~~l~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~-~~~~v~ 90 (773)
T PRK13766 15 EARLYQQLLAATALK-K-NTLVVLPTGLGKTAIALLVIAERLH-KKGGKVLILAPTKPLVEQHAEFFRKFLNI-PEEKIV 90 (773)
T ss_pred CccHHHHHHHHHHhc-C-CeEEEcCCCccHHHHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHHHHHHHhCC-CCceEE
Confidence 389999999988873 3 8999999999999999999988774 46789999999999999999988865532 245788
Q ss_pred EEcCCCCcccc--ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCC
Q psy13788 778 ELTGDVTPDIQ--AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRN 855 (1034)
Q Consensus 778 ~~~g~~~~~~~--~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~ 855 (1034)
.++|+.....+ ...+++|+|+||+.+...+. .....+.+++++|+||||++..... +..+..+.. .....
T Consensus 91 ~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~--~~~~~~~~~~liVvDEaH~~~~~~~--~~~i~~~~~----~~~~~ 162 (773)
T PRK13766 91 VFTGEVSPEKRAELWEKAKVIVATPQVIENDLI--AGRISLEDVSLLIFDEAHRAVGNYA--YVYIAERYH----EDAKN 162 (773)
T ss_pred EEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHH--cCCCChhhCcEEEEECCcccccccc--HHHHHHHHH----hcCCC
Confidence 88888765432 24578999999999855443 2345578899999999999875322 223333322 22345
Q ss_pred eEEEEEccCCCC
Q psy13788 856 VRLVGLSTALAN 867 (1034)
Q Consensus 856 ~~iv~lSATl~~ 867 (1034)
.++++||||+..
T Consensus 163 ~~il~lTaTP~~ 174 (773)
T PRK13766 163 PLVLGLTASPGS 174 (773)
T ss_pred CEEEEEEcCCCC
Confidence 679999999754
No 93
>KOG0329|consensus
Probab=99.86 E-value=3.2e-22 Score=197.83 Aligned_cols=239 Identities=16% Similarity=0.206 Sum_probs=169.0
Q ss_pred CCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCC-CeEEEEcCcHH
Q psy13788 677 LQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPE-AKVVYIAPLKA 755 (1034)
Q Consensus 677 l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~-~~~lvi~Pt~~ 755 (1034)
|.|.++.++-+. ||++|+++|.+++|... -|.+++++|..|.|||.+|.++.++.+...++ ..++++++||+
T Consensus 49 lkpellraivdc------gfehpsevqhecipqai-lgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 49 LKPELLRAIVDC------GFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred cCHHHHHHHHhc------cCCCchHhhhhhhhHHh-hcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 455666666554 46669999999999876 68999999999999999999999999876544 57889999999
Q ss_pred HHHHHHHHHHHHhhhh-cCCeEEEEcCCCCcccc--c-cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccC
Q psy13788 756 LVKERVADWKVKFEAR-LKKKVVELTGDVTPDIQ--A-ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 756 L~~q~~~~~~~~~~~~-~~~~v~~~~g~~~~~~~--~-~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~ 831 (1034)
||-|+.+++. +|.++ .++++..+.|+...... . ..-++|+|+||+++..+.+ .....+++++.+|+||||.++
T Consensus 122 lafqi~~ey~-rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr--~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 122 LAFQISKEYE-RFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVR--NRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred HHHHHHHHHH-HHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHH--hccCchhhcceeehhhHHHHH
Confidence 9999988887 56655 47899999998765432 2 3467999999999999998 567789999999999999887
Q ss_pred C--CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCch
Q psy13788 832 E--DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCP 908 (1034)
Q Consensus 832 ~--~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~ 908 (1034)
. +.+..+..+. ..++...|+..+|||+++ .+.+...+..++..+|.-. .....+.+..+.+..-
T Consensus 199 e~lDMrRDvQEif-------r~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDd------E~KLtLHGLqQ~YvkL 265 (387)
T KOG0329|consen 199 EQLDMRRDVQEIF-------RMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDD------EAKLTLHGLQQYYVKL 265 (387)
T ss_pred HHHHHHHHHHHHh-------hcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccc------hhhhhhhhHHHHHHhh
Confidence 5 3333444433 567888999999999987 3444443333332222110 0111122222222222
Q ss_pred hhhhccHHHHHHHHhhCCCCCeEEEecChHH
Q psy13788 909 RMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQ 939 (1034)
Q Consensus 909 ~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~ 939 (1034)
.....+..+++.+.... -.+++||+.|...
T Consensus 266 ke~eKNrkl~dLLd~Le-FNQVvIFvKsv~R 295 (387)
T KOG0329|consen 266 KENEKNRKLNDLLDVLE-FNQVVIFVKSVQR 295 (387)
T ss_pred hhhhhhhhhhhhhhhhh-hcceeEeeehhhh
Confidence 33445556666665553 3589999988763
No 94
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.86 E-value=4.9e-21 Score=194.20 Aligned_cols=158 Identities=28% Similarity=0.461 Sum_probs=129.6
Q ss_pred ChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEE
Q psy13788 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVEL 779 (1034)
Q Consensus 700 ~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~ 779 (1034)
||+|.++++.+. +++++++.||||+|||+++.+|++..+.+.+..+++|++|+++|+.|+.+++.+.+.. .+.++..+
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~ 78 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLL 78 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEE
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-cccccccc
Confidence 689999999998 8899999999999999999999999888765579999999999999999999876665 67889999
Q ss_pred cCCCCcccc---c-cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhccCC
Q psy13788 780 TGDVTPDIQ---A-ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKR 854 (1034)
Q Consensus 780 ~g~~~~~~~---~-~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~ 854 (1034)
+|+...... . ..+++|+|+||+++..+++... . .+.+++++|+||+|.+.. .++..+..++.++.. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~-~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~-----~~ 151 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK-I-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR-----FK 151 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS-S-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT-----TT
T ss_pred cccccccccccccccccccccccCcchhhccccccc-c-ccccceeeccCcccccccccHHHHHHHHHHHhcC-----CC
Confidence 988764311 1 2479999999999988887522 2 556699999999999987 566667666665432 12
Q ss_pred CeEEEEEccCCC
Q psy13788 855 NVRLVGLSTALA 866 (1034)
Q Consensus 855 ~~~iv~lSATl~ 866 (1034)
+.+++++|||++
T Consensus 152 ~~~~i~~SAT~~ 163 (169)
T PF00270_consen 152 NIQIILLSATLP 163 (169)
T ss_dssp TSEEEEEESSST
T ss_pred CCcEEEEeeCCC
Confidence 688999999997
No 95
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.86 E-value=1.2e-20 Score=197.40 Aligned_cols=163 Identities=20% Similarity=0.247 Sum_probs=133.6
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC---CCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC---PEAKVVYIAPLKALVKERVADWKVKFEA 770 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~---~~~~~lvi~Pt~~L~~q~~~~~~~~~~~ 770 (1034)
+++..|+++|.++++.++ .++++++++|||+|||++|++|++..+... ++++++|++|+++|+.|+...+.... .
T Consensus 17 ~~~~~~~~~Q~~~~~~~~-~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~-~ 94 (203)
T cd00268 17 LGFEKPTPIQARAIPPLL-SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLG-K 94 (203)
T ss_pred cCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHh-c
Confidence 356679999999999998 689999999999999999999999888775 57899999999999999999887543 3
Q ss_pred hcCCeEEEEcCCCCcccc--cc-CCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHH
Q psy13788 771 RLKKKVVELTGDVTPDIQ--AI-SSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVN 846 (1034)
Q Consensus 771 ~~~~~v~~~~g~~~~~~~--~~-~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~ 846 (1034)
..++++..++|+...... .. .+++|+|+||+++..++.+ ....+++++++|+||+|.+.+ .++..+..++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~-- 170 (203)
T cd00268 95 HTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLER--GKLDLSKVKYLVLDEADRMLDMGFEDQIREILKL-- 170 (203)
T ss_pred cCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--CCCChhhCCEEEEeChHHhhccChHHHHHHHHHh--
Confidence 367888888887764322 22 3789999999999887764 335678999999999999876 566666666543
Q ss_pred HhhhccCCCeEEEEEccCCCC
Q psy13788 847 FISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 847 ~l~~~~~~~~~iv~lSATl~~ 867 (1034)
.+.+.+++++|||+++
T Consensus 171 -----l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 171 -----LPKDRQTLLFSATMPK 186 (203)
T ss_pred -----CCcccEEEEEeccCCH
Confidence 3458999999999986
No 96
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.86 E-value=2.4e-20 Score=226.32 Aligned_cols=305 Identities=19% Similarity=0.190 Sum_probs=182.8
Q ss_pred CCChhHHHHHHHHhcC--CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCe
Q psy13788 698 HFNPIQTQIFHCLYHT--DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~--~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~ 775 (1034)
.+++.|.++++.+.+. +.++++.+|||||||.+|+.++...+.. +.++||++|+++|+.|+++++++.| +.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--g~~vLvLvPt~~L~~Q~~~~l~~~f----g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--GKQALVLVPEIALTPQMLARFRARF----GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHh----CCC
Confidence 4899999999999842 4789999999999999999988877765 6899999999999999999888654 467
Q ss_pred EEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC--CChhHH--HHHHHH
Q psy13788 776 VVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE--DRGPVL--EVIVSR 844 (1034)
Q Consensus 776 v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~--~~~~~~--~~il~r 844 (1034)
+..++|+.+...+. ...++|+|+|+..+. ..+.+++++|+||+|...- ..++.+ +.+. .
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~ 287 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-V 287 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-H
Confidence 88899887654321 235799999997652 2367899999999998653 122222 2221 1
Q ss_pred HHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCC-cccccEEEEecCCCCCCchhhhhccHHHHHHHHh
Q psy13788 845 VNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSV-RPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQ 923 (1034)
Q Consensus 845 l~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~-r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 923 (1034)
+ .....+.+++++|||++ .+....-.. ............ +.....+.+.+............+...+++.+++
T Consensus 288 ~----ra~~~~~~~il~SATps-~~s~~~~~~-g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 288 V----RAKLENIPVVLGSATPS-LESLANAQQ-GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred H----HhhccCCCEEEEcCCCC-HHHHHHHhc-cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHH
Confidence 1 12235788999999964 333222111 111111111111 0111123333221100000001123445555543
Q ss_pred h-CCCCCeEEEecChHH-----HHHHHHHH---------H----------HHHhcc-CCCCcccCCChH-------HHHH
Q psy13788 924 H-SPEKPVMIFVSSRRQ-----TRLTAIDL---------I----------TILACE-TNPKMWVHTSDA-------EMDN 970 (1034)
Q Consensus 924 ~-~~~~~~lVF~~s~~~-----~~~~a~~L---------~----------~~~~~~-~~~~~~~~~~~~-------~~~~ 970 (1034)
. ..++++|||+|++.- |+.+-..+ . .+|... ..+..+.++... ..+.
T Consensus 362 ~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~ 441 (679)
T PRK05580 362 RLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTER 441 (679)
T ss_pred HHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHH
Confidence 3 456799999998753 22111110 0 000000 012222222221 1111
Q ss_pred HHhhcCCHHHHHHh-hhchhhhcCCCCH--HHHHHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 971 IVDNIKDSNLKLTI-AFGIGFHHAAAEA--AQSSALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 971 ~~~~i~d~~l~~~l-~~gv~~~h~~~~~--~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
+.+ .|+..+ +..|..+|+++.. .+++.+.+ . |++|+++|||+|+.+++|+ ||.+
T Consensus 442 ~~e-----~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~--~--f~~g~~~ILVgT~~iakG~-d~p~ 498 (679)
T PRK05580 442 LEE-----ELAELFPEARILRIDRDTTRRKGALEQLLA--Q--FARGEADILIGTQMLAKGH-DFPN 498 (679)
T ss_pred HHH-----HHHHhCCCCcEEEEeccccccchhHHHHHH--H--HhcCCCCEEEEChhhccCC-CCCC
Confidence 111 223333 2468889999874 56777766 5 9999999999999999999 9953
No 97
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.83 E-value=2.9e-19 Score=211.57 Aligned_cols=128 Identities=15% Similarity=0.174 Sum_probs=94.3
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
++|+|.|++..+. -.+..++.++||+|||++|.+|++..... +..++|++|+++||.|..+.+.. +.+.+|++++.
T Consensus 69 lrpydVQlig~l~-l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--g~~V~VVTpn~yLA~Rdae~m~~-l~~~LGLsv~~ 144 (762)
T TIGR03714 69 MFPYDVQVLGAIV-LHQGNIAEMKTGEGKTLTATMPLYLNALT--GKGAMLVTTNDYLAKRDAEEMGP-VYEWLGLTVSL 144 (762)
T ss_pred CCccHHHHHHHHH-hcCCceeEecCCcchHHHHHHHHHHHhhc--CCceEEeCCCHHHHHHHHHHHHH-HHhhcCCcEEE
Confidence 6677777776554 23337999999999999999998766554 56799999999999998887764 44458999988
Q ss_pred EcCCCC-----cc-ccccCCCcEEEECHhhH-HHHHhcc----ccccccCcccEEEEeccccc
Q psy13788 779 LTGDVT-----PD-IQAISSASVIVTTPEKW-DGVSRSW----QNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 779 ~~g~~~-----~~-~~~~~~~~IiV~Tpe~l-~~l~~~~----~~~~~l~~l~~lViDEaH~l 830 (1034)
..++.. .+ .+...+++|+++||+++ ...++.. .....++.+.++|+||||.+
T Consensus 145 ~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsI 207 (762)
T TIGR03714 145 GVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSV 207 (762)
T ss_pred EECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhH
Confidence 776521 11 12235899999999999 4444321 12234678999999999987
No 98
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.83 E-value=1.8e-19 Score=208.63 Aligned_cols=269 Identities=17% Similarity=0.200 Sum_probs=170.4
Q ss_pred CCChhHHHHHHHHhcC---CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 698 HFNPIQTQIFHCLYHT---DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~---~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
.++|+|.+|+.++.+. ++..++++|||+|||.++...+... +.++|||+|+++|+.|+.+.+.+.+.. +.
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----~~~~Lvlv~~~~L~~Qw~~~~~~~~~~--~~ 108 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----KRSTLVLVPTKELLDQWAEALKKFLLL--ND 108 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----cCCEEEEECcHHHHHHHHHHHHHhcCC--cc
Confidence 3999999999999854 8899999999999999988877665 455999999999999988777654432 12
Q ss_pred eEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCC
Q psy13788 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKR 854 (1034)
Q Consensus 775 ~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~ 854 (1034)
.++.+.|+..... ...|+|+|.+.+.... ..........++||+||||++.+ +.++.+...+. .
T Consensus 109 ~~g~~~~~~~~~~----~~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a---~~~~~~~~~~~-------~ 172 (442)
T COG1061 109 EIGIYGGGEKELE----PAKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPA---PSYRRILELLS-------A 172 (442)
T ss_pred ccceecCceeccC----CCcEEEEEhHHHhhhh--hhhhhcccccCEEEEEccccCCc---HHHHHHHHhhh-------c
Confidence 4555555443321 1579999999875421 01122223689999999999987 23333332221 1
Q ss_pred CeEEEEEccCCCCHH-----HHHhHhcccCCceeecCCC-----CcccccEEEEecC--CCC---CCc---hh-------
Q psy13788 855 NVRLVGLSTALANAK-----DLATWLNITKQGMYNFRPS-----VRPVPLEVHISGF--PGK---QYC---PR------- 909 (1034)
Q Consensus 855 ~~~iv~lSATl~~~~-----~l~~~l~~~~~~~~~~~~~-----~r~~~l~~~~~~~--~~~---~~~---~~------- 909 (1034)
...++|||||++..+ ++...+| ..+|..... ..-.|........ ... .+. ..
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~g---~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLIG---PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhcC---CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 222899999987532 3333333 222322211 1111111111111 000 000 00
Q ss_pred ------------hhhccH----HHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHh
Q psy13788 910 ------------MAKMNK----PIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVD 973 (1034)
Q Consensus 910 ------------~~~~~~----~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1034)
...... .+...+..+..+.+++|||.+..++..++..+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~----------------------- 306 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP----------------------- 306 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC-----------------------
Confidence 000011 11122222224679999999999999887765321
Q ss_pred hcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCC
Q psy13788 974 NIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 974 ~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Df 1032 (1034)
-++..+.|..+..+|..+.+ . |+.|.+++||++.++..|+ |+
T Consensus 307 ------------~~~~~it~~t~~~eR~~il~--~--fr~g~~~~lv~~~vl~EGv-Di 348 (442)
T COG1061 307 ------------GIVEAITGETPKEEREAILE--R--FRTGGIKVLVTVKVLDEGV-DI 348 (442)
T ss_pred ------------CceEEEECCCCHHHHHHHHH--H--HHcCCCCEEEEeeecccee-cC
Confidence 01457889999999998877 6 9999999999999999999 97
No 99
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=2.8e-19 Score=209.45 Aligned_cols=130 Identities=18% Similarity=0.130 Sum_probs=102.4
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+|+. |+|+|..+++.++ .|+ +..+.||+|||++|.+|++..... +..++|++||++||.|.++.+.+.+. .+|
T Consensus 100 lg~~-p~~VQ~~~~~~ll-~G~--Iae~~TGeGKTla~~lp~~~~al~--G~~v~VvTptreLA~qdae~~~~l~~-~lG 172 (656)
T PRK12898 100 LGQR-HFDVQLMGGLALL-SGR--LAEMQTGEGKTLTATLPAGTAALA--GLPVHVITVNDYLAERDAELMRPLYE-ALG 172 (656)
T ss_pred hCCC-CChHHHHHHHHHh-CCC--eeeeeCCCCcHHHHHHHHHHHhhc--CCeEEEEcCcHHHHHHHHHHHHHHHh-hcC
Confidence 4555 8999999999997 676 999999999999999999987654 78999999999999999888876554 589
Q ss_pred CeEEEEcCCCCccccc-cCCCcEEEECHhhH-HHHHhcc-c----------------------cccccCcccEEEEeccc
Q psy13788 774 KKVVELTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRSW-Q----------------------NRNYVQSVALIIIDEIH 828 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~~-~----------------------~~~~l~~l~~lViDEaH 828 (1034)
++++.+.|+.+...+. ..++||+++|...+ .+.++.. . .....+.+.+.||||+|
T Consensus 173 lsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvD 252 (656)
T PRK12898 173 LTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEAD 252 (656)
T ss_pred CEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccc
Confidence 9999999987654333 45899999999887 3333321 0 11123567899999999
Q ss_pred cc
Q psy13788 829 LL 830 (1034)
Q Consensus 829 ~l 830 (1034)
.+
T Consensus 253 Si 254 (656)
T PRK12898 253 SV 254 (656)
T ss_pred ce
Confidence 65
No 100
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=3.5e-19 Score=213.05 Aligned_cols=130 Identities=22% Similarity=0.181 Sum_probs=101.3
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+|+. |+++|..+...+. .|+ +..+.||+|||++|.+|++..... +..+.+++||++||.|.+..+...+.. +|
T Consensus 75 ~g~~-p~~vQl~~~~~l~-~G~--Iaem~TGeGKTL~a~lp~~l~al~--G~~v~VvTpt~~LA~qd~e~~~~l~~~-lG 147 (790)
T PRK09200 75 LGMR-PYDVQLIGALVLH-EGN--IAEMQTGEGKTLTATMPLYLNALE--GKGVHLITVNDYLAKRDAEEMGQVYEF-LG 147 (790)
T ss_pred hCCC-CchHHHHhHHHHc-CCc--eeeecCCCcchHHHHHHHHHHHHc--CCCeEEEeCCHHHHHHHHHHHHHHHhh-cC
Confidence 4553 8888888888665 564 999999999999999999855544 789999999999999999988765554 89
Q ss_pred CeEEEEcCCCC-cc-ccccCCCcEEEECHhhH-HHHHhc-c---ccccccCcccEEEEeccccc
Q psy13788 774 KKVVELTGDVT-PD-IQAISSASVIVTTPEKW-DGVSRS-W---QNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 774 ~~v~~~~g~~~-~~-~~~~~~~~IiV~Tpe~l-~~l~~~-~---~~~~~l~~l~~lViDEaH~l 830 (1034)
++++.+.|+.+ .. .+...++||+++||+++ .++++. . .....++.+.++|+||||.+
T Consensus 148 l~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsi 211 (790)
T PRK09200 148 LTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSI 211 (790)
T ss_pred CeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccc
Confidence 99999999876 33 23345799999999998 333332 1 12234578999999999976
No 101
>KOG0949|consensus
Probab=99.82 E-value=4e-19 Score=204.76 Aligned_cols=168 Identities=26% Similarity=0.440 Sum_probs=137.7
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
|..+|.+.+... ..+..++|+|||.+|||++...++-..++......+||++|+++|+.|....+..+|....-.+...
T Consensus 512 Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 512 PDEWQRELLDSV-DRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CcHHHHHHhhhh-hcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 888999999877 4788999999999999999888888888888889999999999999999999888885434344445
Q ss_pred EcCCCCccccc-cCCCcEEEECHhhHHHHHhc-cccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhccCCC
Q psy13788 779 LTGDVTPDIQA-ISSASVIVTTPEKWDGVSRS-WQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRN 855 (1034)
Q Consensus 779 ~~g~~~~~~~~-~~~~~IiV~Tpe~l~~l~~~-~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~ 855 (1034)
+.|+...+.+. .-+|+|+|+-|+.+..++.. .....+..+++++|+||+|+++. .-+..++.++.- .+
T Consensus 591 l~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l---------i~ 661 (1330)
T KOG0949|consen 591 LLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL---------IP 661 (1330)
T ss_pred hHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh---------cC
Confidence 55666555443 23799999999999887764 33566789999999999999998 566666665532 36
Q ss_pred eEEEEEccCCCCHHHHHhHhc
Q psy13788 856 VRLVGLSTALANAKDLATWLN 876 (1034)
Q Consensus 856 ~~iv~lSATl~~~~~l~~~l~ 876 (1034)
++++++|||+.|+..+..|++
T Consensus 662 CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 662 CPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred CCeeEEecccCCHHHHHHHHH
Confidence 789999999999999999997
No 102
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.81 E-value=7.1e-19 Score=211.54 Aligned_cols=275 Identities=15% Similarity=0.198 Sum_probs=212.4
Q ss_pred ccccccccCCCChhHHHHHHHHhc---CC--CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHH
Q psy13788 689 QYESLYKFSHFNPIQTQIFHCLYH---TD--NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVAD 763 (1034)
Q Consensus 689 ~~~~~~~~~~~~~~Q~~ai~~l~~---~~--~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~ 763 (1034)
.|++-|+|. -||-|..|+..+.. ++ .|=++|+.-|.|||.+++-+++..+.. +++|.++|||.-||+|.++.
T Consensus 586 ~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 586 EFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--GKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred HHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--CCeEEEEcccHHhHHHHHHH
Confidence 466678888 79999999998863 23 478999999999999999999988876 79999999999999999999
Q ss_pred HHHHhhhhcCCeEEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChh
Q psy13788 764 WKVKFEARLKKKVVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGP 836 (1034)
Q Consensus 764 ~~~~~~~~~~~~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~ 836 (1034)
++++|.. +++++..++--.+...+. ....||||+|..-+ .....+++++++||||-|+.+-
T Consensus 663 FkeRF~~-fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-------~kdv~FkdLGLlIIDEEqRFGV---- 730 (1139)
T COG1197 663 FKERFAG-FPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-------SKDVKFKDLGLLIIDEEQRFGV---- 730 (1139)
T ss_pred HHHHhcC-CCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-------CCCcEEecCCeEEEechhhcCc----
Confidence 9999988 889999887654443322 24689999997643 3566789999999999999763
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHH
Q psy13788 837 VLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKP 916 (1034)
Q Consensus 837 ~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 916 (1034)
.-.. +++. +..++.++-||||+-+..--....|+.+-.+... |+.+..|+..++..++.. .
T Consensus 731 k~KE---kLK~----Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~T-PP~~R~pV~T~V~~~d~~-----------~ 791 (1139)
T COG1197 731 KHKE---KLKE----LRANVDVLTLSATPIPRTLNMSLSGIRDLSVIAT-PPEDRLPVKTFVSEYDDL-----------L 791 (1139)
T ss_pred cHHH---HHHH----HhccCcEEEeeCCCCcchHHHHHhcchhhhhccC-CCCCCcceEEEEecCChH-----------H
Confidence 2222 2322 2367889999999654333344556666555554 444556777777654321 1
Q ss_pred HHH-HHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCC
Q psy13788 917 IYT-AIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAA 995 (1034)
Q Consensus 917 ~~~-~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~ 995 (1034)
+-+ .+++..+++++-..+|.++.-+.++..|.+..+.. .|++-||.|
T Consensus 792 ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEa--------------------------------rI~vaHGQM 839 (1139)
T COG1197 792 IREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEA--------------------------------RIAVAHGQM 839 (1139)
T ss_pred HHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCce--------------------------------EEEEeecCC
Confidence 122 23456678999999999999999999888776543 289999999
Q ss_pred CHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 996 EAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 996 ~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
+..+-+.++. . |-+|+.+|||||...+-|| |+.|
T Consensus 840 ~e~eLE~vM~--~--F~~g~~dVLv~TTIIEtGI-DIPn 873 (1139)
T COG1197 840 RERELEEVML--D--FYNGEYDVLVCTTIIETGI-DIPN 873 (1139)
T ss_pred CHHHHHHHHH--H--HHcCCCCEEEEeeeeecCc-CCCC
Confidence 9999998877 6 9999999999999999999 9864
No 103
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.81 E-value=7.7e-19 Score=206.57 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=100.6
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+|.. |+++|..+...+. .|+ +..++||+|||++|.+|++-.... +..+.+++||..||.|.++.+.+.+ +.+|
T Consensus 53 lg~~-p~~vQlig~~~l~-~G~--Iaem~TGeGKTLva~lpa~l~aL~--G~~V~VvTpt~~LA~qdae~~~~l~-~~LG 125 (745)
T TIGR00963 53 LGMR-PFDVQLIGGIALH-KGK--IAEMKTGEGKTLTATLPAYLNALT--GKGVHVVTVNDYLAQRDAEWMGQVY-RFLG 125 (745)
T ss_pred hCCC-ccchHHhhhhhhc-CCc--eeeecCCCccHHHHHHHHHHHHHh--CCCEEEEcCCHHHHHHHHHHHHHHh-ccCC
Confidence 4544 7778887777664 554 999999999999999999533333 5689999999999999888777555 4589
Q ss_pred CeEEEEcCCCCccccc-cCCCcEEEECHhhH-HHHHhccc----cccccCcccEEEEecccccC
Q psy13788 774 KKVVELTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRSWQ----NRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~~~----~~~~l~~l~~lViDEaH~l~ 831 (1034)
++++.+.|+.+...+. .-.++|+++||.++ ..+++... ....++.+.++|+||+|.++
T Consensus 126 Lsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 126 LSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 9999999987755433 34689999999998 66666321 12356889999999999874
No 104
>KOG0349|consensus
Probab=99.80 E-value=4.8e-20 Score=194.77 Aligned_cols=246 Identities=15% Similarity=0.195 Sum_probs=153.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHhhhhc---CCeEEEEcCCCCcccc---ccCCCcEEEECHhhHHHHHhccccccccCc
Q psy13788 745 AKVVYIAPLKALVKERVADWKVKFEARL---KKKVVELTGDVTPDIQ---AISSASVIVTTPEKWDGVSRSWQNRNYVQS 818 (1034)
Q Consensus 745 ~~~lvi~Pt~~L~~q~~~~~~~~~~~~~---~~~v~~~~g~~~~~~~---~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~ 818 (1034)
+.++|+-|+++|++|..+.+. .|.... .++...+.|+.....+ ...+.+|+|+||+++..++. .....+..
T Consensus 287 p~avivepsrelaEqt~N~i~-~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is--~g~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIE-EFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPIS--KGLVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHH-HHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhh--ccceeeee
Confidence 679999999999999999765 344322 2343345554433322 24689999999999988887 55667888
Q ss_pred ccEEEEecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC--HHHHH-------hHhcccCCcee-----
Q psy13788 819 VALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN--AKDLA-------TWLNITKQGMY----- 883 (1034)
Q Consensus 819 l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~--~~~l~-------~~l~~~~~~~~----- 883 (1034)
.+++|+||++.++. .+..-+..+...+..+. ....+.|.+.+|||+.- ...++ .|..++.....
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~t-sdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvH 442 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMT-SDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVH 442 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhh-cCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhc
Confidence 99999999999876 55544444444444332 22356789999999864 22233 45444433211
Q ss_pred e----cCCCCccc------ccEEEEecCCCCC------Cchhhh----hc--cHHHHHHHHhhCCCCCeEEEecChHHHH
Q psy13788 884 N----FRPSVRPV------PLEVHISGFPGKQ------YCPRMA----KM--NKPIYTAIKQHSPEKPVMIFVSSRRQTR 941 (1034)
Q Consensus 884 ~----~~~~~r~~------~l~~~~~~~~~~~------~~~~~~----~~--~~~~~~~l~~~~~~~~~lVF~~s~~~~~ 941 (1034)
. ..|+.... +++. .....++ .++.+. .+ .+....+++++. ..+.||||.|+.+|.
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~t--d~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~-mdkaiifcrtk~dcD 519 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIET--DKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHA-MDKAIIFCRTKQDCD 519 (725)
T ss_pred cceeecCCccCccHHHHhhhhcc--CCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhc-cCceEEEEeccccch
Confidence 0 11111100 1110 0000000 011100 00 112233455553 458999999999999
Q ss_pred HHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEe
Q psy13788 942 LTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVIN 1021 (1034)
Q Consensus 942 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVa 1021 (1034)
.+-+.+.+.... .+.+..+||+..+.+|+.-.+ . |+++.++.|||
T Consensus 520 nLer~~~qkgg~-------------------------------~~scvclhgDrkP~Erk~nle--~--Fkk~dvkflic 564 (725)
T KOG0349|consen 520 NLERMMNQKGGK-------------------------------HYSCVCLHGDRKPDERKANLE--S--FKKFDVKFLIC 564 (725)
T ss_pred HHHHHHHHcCCc-------------------------------cceeEEEecCCChhHHHHHHH--h--hhhcCeEEEEE
Confidence 888777665432 234788999997777765544 4 99999999999
Q ss_pred chhhhhccCCCC
Q psy13788 1022 RSTSANGNFDFN 1033 (1034)
Q Consensus 1022 T~~l~~Gv~Dfs 1033 (1034)
||+++||+ |+-
T Consensus 565 tdvaargl-di~ 575 (725)
T KOG0349|consen 565 TDVAARGL-DIT 575 (725)
T ss_pred ehhhhccc-ccc
Confidence 99999999 974
No 105
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=7.6e-19 Score=205.70 Aligned_cols=278 Identities=19% Similarity=0.185 Sum_probs=163.9
Q ss_pred EEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc-------c
Q psy13788 718 LLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA-------I 790 (1034)
Q Consensus 718 ll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-------~ 790 (1034)
++.+|||||||.+|+..+...+.+ +.+++|++|+++|+.|+++++++.| +.++..++|+.+...+. .
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--GKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 478999999999998777666554 7799999999999999999888765 45788888877654321 2
Q ss_pred CCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC--CChhHH--HHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 791 SSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE--DRGPVL--EVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 791 ~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~--~~~~~~--~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
..++|+|+|+..+. ..+.++++|||||+|...- ..++.| +.+. .++ . ...+.++|++|||++
T Consensus 75 g~~~IVVGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a-~~r---a-~~~~~~vil~SATPs 140 (505)
T TIGR00595 75 GEILVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVA-VYR---A-KKFNCPVVLGSATPS 140 (505)
T ss_pred CCCCEEECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHHH-HHH---H-HhcCCCEEEEeCCCC
Confidence 36799999998652 2367899999999998753 222322 1111 111 1 124678999999954
Q ss_pred CHHHHHhHhcccCCceeecC--CCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHh-hCCCCCeEEEecChHH----
Q psy13788 867 NAKDLATWLNITKQGMYNFR--PSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQ-HSPEKPVMIFVSSRRQ---- 939 (1034)
Q Consensus 867 ~~~~l~~~l~~~~~~~~~~~--~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~lVF~~s~~~---- 939 (1034)
.+........ ........ +..++. ..+.+........ .......+++.+.+ ...++++|||+|++.-
T Consensus 141 -les~~~~~~g-~~~~~~l~~r~~~~~~-p~v~vid~~~~~~---~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~ 214 (505)
T TIGR00595 141 -LESYHNAKQK-AYRLLVLTRRVSGRKP-PEVKLIDMRKEPR---QSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNL 214 (505)
T ss_pred -HHHHHHHhcC-CeEEeechhhhcCCCC-CeEEEEecccccc---cCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCee
Confidence 4433332211 11111111 111111 1233332221110 01223345555543 3456799999999863
Q ss_pred -HHHHHHH---------HH----------HHHhcc-CCCCcccCCCh----------HHHHHHHhhcCCHHHHHHh-hhc
Q psy13788 940 -TRLTAID---------LI----------TILACE-TNPKMWVHTSD----------AEMDNIVDNIKDSNLKLTI-AFG 987 (1034)
Q Consensus 940 -~~~~a~~---------L~----------~~~~~~-~~~~~~~~~~~----------~~~~~~~~~i~d~~l~~~l-~~g 987 (1034)
|..+-.. |. .++... ..+..+.++.. +.+++. |+..+ +..
T Consensus 215 ~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~--------l~~~fp~~~ 286 (505)
T TIGR00595 215 LCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEE--------LAKLFPGAR 286 (505)
T ss_pred EhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHH--------HHhhCCCCc
Confidence 2211100 00 000000 01223333322 222222 22333 246
Q ss_pred hhhhcCCCCHHHH--HHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 988 IGFHHAAAEAAQS--SALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 988 v~~~h~~~~~~~R--~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
|..+|++++...+ +.+.+ . |++|+++|||+|+.+++|+ ||.+
T Consensus 287 v~~~d~d~~~~~~~~~~~l~--~--f~~g~~~ILVgT~~i~kG~-d~~~ 330 (505)
T TIGR00595 287 IARIDSDTTSRKGAHEALLN--Q--FANGKADILIGTQMIAKGH-HFPN 330 (505)
T ss_pred EEEEecccccCccHHHHHHH--H--HhcCCCCEEEeCcccccCC-CCCc
Confidence 8899999987766 56655 5 9999999999999999999 9964
No 106
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.80 E-value=5.1e-18 Score=210.69 Aligned_cols=266 Identities=15% Similarity=0.124 Sum_probs=161.8
Q ss_pred HHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHH-hCCCCeEEEEcCcH----HHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 704 TQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFK-QCPEAKVVYIAPLK----ALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 704 ~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~-~~~~~~~lvi~Pt~----~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
.+.+..+. +++.++++|+||||||+ ++|.+..-. ......+++..|.+ +||.++..++...++ ..++.
T Consensus 80 ~~Il~ai~-~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG----~~VGY 152 (1294)
T PRK11131 80 QDILEAIR-DHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELG----GCVGY 152 (1294)
T ss_pred HHHHHHHH-hCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc----ceece
Confidence 34445554 67778899999999999 678443322 22224555667865 555555554443333 33322
Q ss_pred EcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccc-cCC-CChhHHHHHHHHHHHhhhccCCCe
Q psy13788 779 LTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHL-LGE-DRGPVLEVIVSRVNFISSYTKRNV 856 (1034)
Q Consensus 779 ~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~-l~~-~~~~~~~~il~rl~~l~~~~~~~~ 856 (1034)
- ...+.+...+++|+++||+++...+.. ...+.++++||+||||. ..+ ++-. ..++.+.. ..++.
T Consensus 153 ~---vrf~~~~s~~t~I~v~TpG~LL~~l~~---d~~Ls~~~~IIIDEAHERsLn~DfLL------g~Lk~lL~-~rpdl 219 (1294)
T PRK11131 153 K---VRFNDQVSDNTMVKLMTDGILLAEIQQ---DRLLMQYDTIIIDEAHERSLNIDFIL------GYLKELLP-RRPDL 219 (1294)
T ss_pred e---ecCccccCCCCCEEEEChHHHHHHHhc---CCccccCcEEEecCccccccccchHH------HHHHHhhh-cCCCc
Confidence 1 112222234789999999999777652 34589999999999994 544 3321 12222212 22468
Q ss_pred EEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHh--hCCCCCeEEEe
Q psy13788 857 RLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQ--HSPEKPVMIFV 934 (1034)
Q Consensus 857 ~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~lVF~ 934 (1034)
|+|++|||++ .+.++++++.. .++.... +..++++.+.......... .......+...+.. ....+.+||||
T Consensus 220 KvILmSATid-~e~fs~~F~~a--pvI~V~G--r~~pVei~y~p~~~~~~~~-~~d~l~~ll~~V~~l~~~~~GdILVFL 293 (1294)
T PRK11131 220 KVIITSATID-PERFSRHFNNA--PIIEVSG--RTYPVEVRYRPIVEEADDT-ERDQLQAIFDAVDELGREGPGDILIFM 293 (1294)
T ss_pred eEEEeeCCCC-HHHHHHHcCCC--CEEEEcC--ccccceEEEeecccccchh-hHHHHHHHHHHHHHHhcCCCCCEEEEc
Confidence 9999999995 56778776532 2333332 3334444443322111000 01111222222221 13456899999
Q ss_pred cChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcC
Q psy13788 935 SSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSK 1014 (1034)
Q Consensus 935 ~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g 1014 (1034)
+++++++.++..|...... ...|..+||+|++++|..+.+ . .|
T Consensus 294 pg~~EIe~lae~L~~~~~~-------------------------------~~~VlpLhg~Ls~~eQ~~Vf~--~----~g 336 (1294)
T PRK11131 294 SGEREIRDTADALNKLNLR-------------------------------HTEILPLYARLSNSEQNRVFQ--S----HS 336 (1294)
T ss_pred CCHHHHHHHHHHHHhcCCC-------------------------------cceEeecccCCCHHHHHHHhc--c----cC
Confidence 9999999999888653110 012678999999999999855 2 47
Q ss_pred CceEEEechhhhhccCCCC
Q psy13788 1015 ENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1015 ~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
..+|||||+++++|| |+.
T Consensus 337 ~rkIIVATNIAEtSI-TIp 354 (1294)
T PRK11131 337 GRRIVLATNVAETSL-TVP 354 (1294)
T ss_pred CeeEEEeccHHhhcc-ccC
Confidence 889999999999999 985
No 107
>KOG4434|consensus
Probab=99.79 E-value=1.1e-17 Score=172.83 Aligned_cols=200 Identities=21% Similarity=0.336 Sum_probs=165.7
Q ss_pred CCCCCHHHHHHhhcccccc-----ccCcCChhhhHHHHHHhhhccccCCCCC----CCCcchhHHHHHHHHHhCCCCCCc
Q psy13788 365 TKVLDDVGILSMISQAHEF-----EQLKVRDEELHELDNLTQECCEIPIRGG----SENVHGKVNILLQTLLSRGRVNSF 435 (1034)
Q Consensus 365 ~~~~~~~~lL~ll~~s~EF-----~~i~~r~~E~~~l~~l~~~~~~~~~~~~----~~~~~~Kv~~LLqa~i~~~~~~~~ 435 (1034)
++.|....+|.+|+.+.|| +++.-|..+..++..|++....+..++. .-..+.|..+||++|++|+|++.-
T Consensus 8 Tp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~d 87 (520)
T KOG4434|consen 8 TPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESD 87 (520)
T ss_pred CchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChh
Confidence 4567788999999999999 4567888888899888877444443333 124778999999999999999977
Q ss_pred ChHhhHHHHHHhHHHHHHHHHHHHHhc----------c--cHHHHHHHHHHHHHHHhccCCCCCcccccccccccCCCCC
Q psy13788 436 SLVSDLEYVNQNVIRIIRALFEITLHR----------N--NAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSP 503 (1034)
Q Consensus 436 ~l~gd~~~i~~~a~rll~al~ei~~~~----------~--~~~~~~~~l~L~k~l~~~~w~~~~~L~ql~~~~~~~~~~p 503 (1034)
.|.-|.++|+..+++++..|+.+...+ . ......++++|+.|+.||+|...+||+|| |
T Consensus 88 tLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQL----------P 157 (520)
T KOG4434|consen 88 TLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQL----------P 157 (520)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcC----------C
Confidence 888999999999999999998876554 1 12456789999999999999999999999 9
Q ss_pred CCCHHHHHHHHhcC-C-CHHHHhcCCHHHHHhhhc--CchhHHHHHHHhhcCCcceEEEEEEeec---------cceEEE
Q psy13788 504 ILKPDILNKIEQRG-L-TVEDLREMPAKEISYMLR--DPHVGDKVKQCAWEIPLLEIESKLLPIT---------RTVLKI 570 (1034)
Q Consensus 504 ~i~~~~~~~L~~~g-~-t~~~l~~~~~~el~~~l~--~~~~g~~i~~~~~~~P~l~~~~~~~pit---------~~~l~v 570 (1034)
||.++-++.+.++. + +++||+.+.+++...+|+ +...++.++.++.+||++.++...+.+. .+++.|
T Consensus 158 HitednL~~~~KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv 237 (520)
T KOG4434|consen 158 HITEDNLQHLRKKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTV 237 (520)
T ss_pred ccchHHHHHHhhhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEE
Confidence 99999999997665 6 999999999999999998 5678999999999999999988777442 245566
Q ss_pred EEEE
Q psy13788 571 HLTI 574 (1034)
Q Consensus 571 ~l~~ 574 (1034)
.|++
T Consensus 238 ~Vtl 241 (520)
T KOG4434|consen 238 KVTL 241 (520)
T ss_pred EEEE
Confidence 6553
No 108
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.77 E-value=2.5e-17 Score=170.85 Aligned_cols=268 Identities=20% Similarity=0.239 Sum_probs=176.8
Q ss_pred CCChhHHHHHHHHh---cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 698 HFNPIQTQIFHCLY---HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~---~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
+++|.|..+-..+. ++..+.++.|-||+|||....-.+-..+.+ |.++.+..|....+-+.+.++++.|.. .
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~--G~~vciASPRvDVclEl~~Rlk~aF~~---~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ--GGRVCIASPRVDVCLELYPRLKQAFSN---C 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc--CCeEEEecCcccchHHHHHHHHHhhcc---C
Confidence 48999999876654 367899999999999998766566566555 899999999999999999999887754 6
Q ss_pred eEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCC
Q psy13788 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKR 854 (1034)
Q Consensus 775 ~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~ 854 (1034)
.+..++|+..... .++++|+|..++..+- +.++++|+||+|...-.-.+.+...+..- ...
T Consensus 172 ~I~~Lyg~S~~~f----r~plvVaTtHQLlrFk---------~aFD~liIDEVDAFP~~~d~~L~~Av~~a------rk~ 232 (441)
T COG4098 172 DIDLLYGDSDSYF----RAPLVVATTHQLLRFK---------QAFDLLIIDEVDAFPFSDDQSLQYAVKKA------RKK 232 (441)
T ss_pred CeeeEecCCchhc----cccEEEEehHHHHHHH---------hhccEEEEeccccccccCCHHHHHHHHHh------hcc
Confidence 7888999876554 3789999988875433 45789999999987543334455444322 233
Q ss_pred CeEEEEEccCCCCHHHHHhHhcccCCceeecCCCC--cc--cccEEEEecCCCCCCchhhhhccHHHHHHHHhh-CCCCC
Q psy13788 855 NVRLVGLSTALANAKDLATWLNITKQGMYNFRPSV--RP--VPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQH-SPEKP 929 (1034)
Q Consensus 855 ~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~--r~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 929 (1034)
.-..|.+|||.++ .+.+-+....-......... +| +|--+.+..+... -....+...++..++.+ ..+.|
T Consensus 233 ~g~~IylTATp~k--~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~---l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 233 EGATIYLTATPTK--KLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKK---LQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred cCceEEEecCChH--HHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHH---hhhccCCHHHHHHHHHHHhcCCc
Confidence 4557899999975 22222211111111111111 12 2211111111000 00111222345555443 45789
Q ss_pred eEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchh
Q psy13788 930 VMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLA 1009 (1034)
Q Consensus 930 ~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~ 1009 (1034)
++||+++++..+.+|..|...+.... ++..|+. ++...+.|+.
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~--------------------------------i~~Vhs~-d~~R~EkV~~---- 350 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKET--------------------------------IASVHSE-DQHRKEKVEA---- 350 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccc--------------------------------eeeeecc-CccHHHHHHH----
Confidence 99999999999999988866554432 5566665 2333366666
Q ss_pred HhhcCCceEEEechhhhhccCCCC
Q psy13788 1010 ALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1010 ~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
|++|++.+||+|..++||+ -|-
T Consensus 351 -fR~G~~~lLiTTTILERGV-Tfp 372 (441)
T COG4098 351 -FRDGKITLLITTTILERGV-TFP 372 (441)
T ss_pred -HHcCceEEEEEeehhhccc-ccc
Confidence 9999999999999999999 774
No 109
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=2e-17 Score=197.14 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=94.1
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
|.++|.-.--. ++.| -+..++||+|||++|.+|++..... +..++|++||++||.|.++.+...+ +.+|++++.
T Consensus 83 ~ydvQliGg~~-Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~--G~~V~VvTpn~yLA~qd~e~m~~l~-~~lGLtv~~ 156 (896)
T PRK13104 83 HFDVQLIGGMV-LHEG--NIAEMRTGEGKTLVATLPAYLNAIS--GRGVHIVTVNDYLAKRDSQWMKPIY-EFLGLTVGV 156 (896)
T ss_pred cchHHHhhhhh-hccC--ccccccCCCCchHHHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHHHh-cccCceEEE
Confidence 44455443332 3444 4899999999999999999976654 5679999999999999888777544 558999999
Q ss_pred EcCCCCccccc-cCCCcEEEECHhhH-HHHHhccccc----cccCcccEEEEeccccc
Q psy13788 779 LTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRSWQNR----NYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 779 ~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~~~~~----~~l~~l~~lViDEaH~l 830 (1034)
+.|+.+...+. .-.+||+++||+++ .++++..... ...+.+.++|+||||.+
T Consensus 157 i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsi 214 (896)
T PRK13104 157 IYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSI 214 (896)
T ss_pred EeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhh
Confidence 99987655443 33789999999998 6666632111 11268899999999976
No 110
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.76 E-value=6.5e-17 Score=201.83 Aligned_cols=268 Identities=15% Similarity=0.118 Sum_probs=168.1
Q ss_pred HHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh-CCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcC-C
Q psy13788 705 QIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-CPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTG-D 782 (1034)
Q Consensus 705 ~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~-~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g-~ 782 (1034)
+.+..+ .+++.++|+|+||||||+ ++|.+..-.. ....++++..|.|--+...+.++.+.++. .++...| .
T Consensus 74 ~Il~~l-~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~----~lG~~VGY~ 146 (1283)
T TIGR01967 74 DIAEAI-AENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGT----PLGEKVGYK 146 (1283)
T ss_pred HHHHHH-HhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCC----CcceEEeeE
Confidence 344445 467789999999999999 5665433221 22356777889998888888877765554 3443334 2
Q ss_pred CCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccc-cCC-CChhHHHHHHHHHHHhhhccCCCeEEEE
Q psy13788 783 VTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHL-LGE-DRGPVLEVIVSRVNFISSYTKRNVRLVG 860 (1034)
Q Consensus 783 ~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~-l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~ 860 (1034)
...+.+...+..|.++|++.+...+. ....+.++++||+||||. ..+ ++. +..++.+.. ..++.|+|+
T Consensus 147 vR~~~~~s~~T~I~~~TdGiLLr~l~---~d~~L~~~~~IIIDEaHERsL~~D~L------L~lLk~il~-~rpdLKlIl 216 (1283)
T TIGR01967 147 VRFHDQVSSNTLVKLMTDGILLAETQ---QDRFLSRYDTIIIDEAHERSLNIDFL------LGYLKQLLP-RRPDLKIII 216 (1283)
T ss_pred EcCCcccCCCceeeeccccHHHHHhh---hCcccccCcEEEEcCcchhhccchhH------HHHHHHHHh-hCCCCeEEE
Confidence 22333333468899999999976654 345689999999999994 544 332 122222212 235789999
Q ss_pred EccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhh--CCCCCeEEEecChH
Q psy13788 861 LSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQH--SPEKPVMIFVSSRR 938 (1034)
Q Consensus 861 lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~lVF~~s~~ 938 (1034)
||||+. ...++++++.. .++... .+..|+++.+.......... .......+...+... ...+.+|||+++++
T Consensus 217 mSATld-~~~fa~~F~~a--pvI~V~--Gr~~PVev~Y~~~~~~~~~~-~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~ 290 (1283)
T TIGR01967 217 TSATID-PERFSRHFNNA--PIIEVS--GRTYPVEVRYRPLVEEQEDD-DLDQLEAILDAVDELFAEGPGDILIFLPGER 290 (1283)
T ss_pred EeCCcC-HHHHHHHhcCC--CEEEEC--CCcccceeEEecccccccch-hhhHHHHHHHHHHHHHhhCCCCEEEeCCCHH
Confidence 999994 67788887632 233322 23344454443322111000 001111222222211 13468999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceE
Q psy13788 939 QTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQN 1018 (1034)
Q Consensus 939 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~V 1018 (1034)
+++.++..|...... ...|..+||+|+.++|..+.+ - + +..+|
T Consensus 291 EI~~l~~~L~~~~~~-------------------------------~~~VlpLhg~Ls~~eQ~~vf~--~--~--~~rkI 333 (1283)
T TIGR01967 291 EIRDAAEILRKRNLR-------------------------------HTEILPLYARLSNKEQQRVFQ--P--H--SGRRI 333 (1283)
T ss_pred HHHHHHHHHHhcCCC-------------------------------CcEEEeccCCCCHHHHHHHhC--C--C--CCceE
Confidence 999998887653210 012678999999999988844 2 2 34699
Q ss_pred EEechhhhhccCCCC
Q psy13788 1019 VINRSTSANGNFDFN 1033 (1034)
Q Consensus 1019 LVaT~~l~~Gv~Dfs 1033 (1034)
||||+++++|| |+.
T Consensus 334 VLATNIAEtSL-TIp 347 (1283)
T TIGR01967 334 VLATNVAETSL-TVP 347 (1283)
T ss_pred EEeccHHHhcc-ccC
Confidence 99999999999 985
No 111
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=2e-16 Score=188.74 Aligned_cols=125 Identities=17% Similarity=0.175 Sum_probs=95.2
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHH-HHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCF-RVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il-~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
|++.|.-.--.+ +.|+ +..++||+|||++|.+|++ ..+ . +..+-+++||..||.|-++.+...+ +.+|++++
T Consensus 82 ~~dvQlig~l~L-~~G~--Iaem~TGeGKTLva~lpa~l~aL-~--G~~V~IvTpn~yLA~rd~e~~~~l~-~~LGlsv~ 154 (830)
T PRK12904 82 HFDVQLIGGMVL-HEGK--IAEMKTGEGKTLVATLPAYLNAL-T--GKGVHVVTVNDYLAKRDAEWMGPLY-EFLGLSVG 154 (830)
T ss_pred CCccHHHhhHHh-cCCc--hhhhhcCCCcHHHHHHHHHHHHH-c--CCCEEEEecCHHHHHHHHHHHHHHH-hhcCCeEE
Confidence 666666654433 4663 8999999999999999996 554 3 4568899999999999888777655 45899999
Q ss_pred EEcCCCCccccc-cCCCcEEEECHhhH-HHHHhccc----cccccCcccEEEEeccccc
Q psy13788 778 ELTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRSWQ----NRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 778 ~~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~~~----~~~~l~~l~~lViDEaH~l 830 (1034)
.+.|+.+...+. .-.+||+++||..+ .++++... .....+.+.++|+||||.+
T Consensus 155 ~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 155 VILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred EEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 999987765443 33689999999999 66666321 1123577899999999976
No 112
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.71 E-value=4.2e-16 Score=196.01 Aligned_cols=132 Identities=18% Similarity=0.145 Sum_probs=88.5
Q ss_pred CCChhHHHHHHHHh----cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 698 HFNPIQTQIFHCLY----HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~----~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
.++++|.+|+..+. ++.+++++++|||||||.++...+.+.+......++||++|+++|+.|..+.+...... .+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~-~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIE-GD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccc-cc
Confidence 48999999997764 23467999999999999987666666665555689999999999999999888752111 11
Q ss_pred CeEEEEcCCCC-ccccccCCCcEEEECHhhHHHHHhccc---cccccCcccEEEEeccccc
Q psy13788 774 KKVVELTGDVT-PDIQAISSASVIVTTPEKWDGVSRSWQ---NRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 774 ~~v~~~~g~~~-~~~~~~~~~~IiV~Tpe~l~~l~~~~~---~~~~l~~l~~lViDEaH~l 830 (1034)
..+..+.+... .+.......+|+|+|..++........ ....+..+++||+||||+-
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs 552 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRG 552 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCC
Confidence 11111111000 011112357999999999855432111 1134678899999999985
No 113
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.68 E-value=5.4e-16 Score=190.35 Aligned_cols=285 Identities=18% Similarity=0.183 Sum_probs=172.4
Q ss_pred CChhHHHHHHHHhc--CCC-cEEEEcCCCChhhHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 699 FNPIQTQIFHCLYH--TDN-NVLLGAPTGSGKTIAAEITCFRVFKQC--PEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~--~~~-~vll~apTGsGKT~~~~l~il~~l~~~--~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
..+.|..++..+.. ... .+++.||||+|||.+++.++...+... ...+++++.|+++++++++++++..++.. +
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~-~ 274 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF-S 274 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc-c
Confidence 47899999987653 234 788999999999999999998777653 57899999999999999999998766542 1
Q ss_pred CeEEEEcCCCCcccc-----------------ccCCCcEEEECHhhHHHHHhcccccccc--CcccEEEEecccccCCC-
Q psy13788 774 KKVVELTGDVTPDIQ-----------------AISSASVIVTTPEKWDGVSRSWQNRNYV--QSVALIIIDEIHLLGED- 833 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~-----------------~~~~~~IiV~Tpe~l~~l~~~~~~~~~l--~~l~~lViDEaH~l~~~- 833 (1034)
......+|....... ......++++||.+.............+ -..+++|+||+|.+.+.
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 111112332211100 0113456677776664422211111111 23468999999999875
Q ss_pred ChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH--HHHHhHhcccCCceeecC--CCCcccccEEEEecCCCCCCchh
Q psy13788 834 RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA--KDLATWLNITKQGMYNFR--PSVRPVPLEVHISGFPGKQYCPR 909 (1034)
Q Consensus 834 ~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~--~~l~~~l~~~~~~~~~~~--~~~r~~~l~~~~~~~~~~~~~~~ 909 (1034)
.-..+..++..+ ...+.++|++|||+|.. +.+...++.......+.. +......+. .......
T Consensus 355 ~~~~l~~~i~~l------~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~-------~~~~~~~ 421 (733)
T COG1203 355 MLAALLALLEAL------AEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLK-------RKERVDV 421 (733)
T ss_pred hHHHHHHHHHHH------HhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccc-------cccchhh
Confidence 333333333333 23467899999999873 344444432221111100 000000000 0000000
Q ss_pred hhh-ccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhch
Q psy13788 910 MAK-MNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGI 988 (1034)
Q Consensus 910 ~~~-~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv 988 (1034)
... .....-........+++++|.|||+..|.+++..|..... .+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~----------------------------------~v 467 (733)
T COG1203 422 EDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP----------------------------------KV 467 (733)
T ss_pred hhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC----------------------------------CE
Confidence 000 0001111223345678999999999999999988866432 17
Q ss_pred hhhcCCCCHHHHHHhcccchhH-hhcCCceEEEechhhhhccCCCC
Q psy13788 989 GFHHAAAEAAQSSALQMPKLAA-LSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 989 ~~~h~~~~~~~R~~ie~~~l~~-f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
.++||.+...+|...++. +.. |+.+...|+|||++.+.|| |+|
T Consensus 468 ~LlHSRf~~~dR~~ke~~-l~~~~~~~~~~IvVaTQVIEagv-Did 511 (733)
T COG1203 468 LLLHSRFTLKDREEKERE-LKKLFKQNEGFIVVATQVIEAGV-DID 511 (733)
T ss_pred EEEecccchhhHHHHHHH-HHHHHhccCCeEEEEeeEEEEEe-ccc
Confidence 899999999999665551 211 3567889999999999999 987
No 114
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.68 E-value=4.5e-15 Score=186.23 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=60.7
Q ss_pred CChhHHHHHHHH---hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC--
Q psy13788 699 FNPIQTQIFHCL---YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK-- 773 (1034)
Q Consensus 699 ~~~~Q~~ai~~l---~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~-- 773 (1034)
++|.|.++++.+ +.+++++++.||||+|||++|++|++.... ++.+++|.+||++|..|++.+-...+.+.++
T Consensus 246 ~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~ 323 (850)
T TIGR01407 246 YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--TEKPVVISTNTKVLQSQLLEKDIPLLNEILNFK 323 (850)
T ss_pred cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 889999866533 347889999999999999999999987655 4679999999999999987643334444433
Q ss_pred CeEEEEc
Q psy13788 774 KKVVELT 780 (1034)
Q Consensus 774 ~~v~~~~ 780 (1034)
+++..+.
T Consensus 324 ~~~~~~k 330 (850)
T TIGR01407 324 INAALIK 330 (850)
T ss_pred ceEEEEE
Confidence 4444443
No 115
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.67 E-value=1.7e-15 Score=186.30 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=104.0
Q ss_pred CCChhHHHHHHHHhc-CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeE
Q psy13788 698 HFNPIQTQIFHCLYH-TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKV 776 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~-~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v 776 (1034)
.|.|+|..+...++. ....+++.-..|.|||+-+.+.+...+......++|||||. .|+.||..++.++|+ +..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~----l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFN----LRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhC----CCe
Confidence 389999999877653 33579999999999999998887777776666899999997 899999888876654 445
Q ss_pred EEEcCCCCcc-----ccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC---CChhHHHHHHHHHHHh
Q psy13788 777 VELTGDVTPD-----IQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE---DRGPVLEVIVSRVNFI 848 (1034)
Q Consensus 777 ~~~~g~~~~~-----~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~---~~~~~~~~il~rl~~l 848 (1034)
..+.++.... ...+...+++|+|.+.+..-.. +.....-...+++|+||||++.. .....+..+ ..+
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~-~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v-~~L--- 301 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQ-RLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV-EQL--- 301 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHH-HHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH-HHH---
Confidence 5554432111 1123457899999987642111 01111124679999999999963 112223222 222
Q ss_pred hhccCCCeEEEEEccCCCC
Q psy13788 849 SSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 849 ~~~~~~~~~iv~lSATl~~ 867 (1034)
. .....+++||||+..
T Consensus 302 a---~~~~~~LLLTATP~q 317 (956)
T PRK04914 302 A---EVIPGVLLLTATPEQ 317 (956)
T ss_pred h---hccCCEEEEEcCccc
Confidence 1 123457899999763
No 116
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.64 E-value=4.4e-15 Score=154.39 Aligned_cols=168 Identities=27% Similarity=0.345 Sum_probs=125.3
Q ss_pred ccCCCChhHHHHHHHHhcCC-CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 695 KFSHFNPIQTQIFHCLYHTD-NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 695 ~~~~~~~~Q~~ai~~l~~~~-~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
++..|+++|.++++.+. .. +++++.+|||+|||.++..+++..+...+..+++|++|+.+++.|+...+...+.....
T Consensus 5 ~~~~~~~~Q~~~~~~~~-~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 5 GFEPLRPYQKEAIEALL-SGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred CCCCCCHHHHHHHHHHH-cCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 45569999999999998 45 89999999999999999999999887765689999999999999998888765543112
Q ss_pred CeEEEEcCCCCccc-c-ccCCC-cEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhh
Q psy13788 774 KKVVELTGDVTPDI-Q-AISSA-SVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFIS 849 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~-~-~~~~~-~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~ 849 (1034)
.....+.+...... . ...+. +++++|++.+....... ......++++|+||+|.+.. .+...+..++..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~--~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~---- 157 (201)
T smart00487 84 KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEND--LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL---- 157 (201)
T ss_pred EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcC--CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC----
Confidence 34444444332111 1 12234 99999999997777632 24567889999999999986 5666666555433
Q ss_pred hccCCCeEEEEEccCCCCHHHHH
Q psy13788 850 SYTKRNVRLVGLSTALANAKDLA 872 (1034)
Q Consensus 850 ~~~~~~~~iv~lSATl~~~~~l~ 872 (1034)
....+++++|||+++..+..
T Consensus 158 ---~~~~~~v~~saT~~~~~~~~ 177 (201)
T smart00487 158 ---PKNVQLLLLSATPPEEIENL 177 (201)
T ss_pred ---CccceEEEEecCCchhHHHH
Confidence 46788999999998744333
No 117
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=8.1e-15 Score=174.50 Aligned_cols=127 Identities=15% Similarity=0.093 Sum_probs=93.7
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
|.++|.-.--. ++.| -+..++||.|||++|.+|++..... +..+.||+|+..||.|-.+.+...+ +.+|++++.
T Consensus 83 ~ydVQliGgl~-L~~G--~IaEm~TGEGKTL~a~lp~~l~al~--g~~VhIvT~ndyLA~RD~e~m~~l~-~~lGlsv~~ 156 (908)
T PRK13107 83 HFDVQLLGGMV-LDSN--RIAEMRTGEGKTLTATLPAYLNALT--GKGVHVITVNDYLARRDAENNRPLF-EFLGLTVGI 156 (908)
T ss_pred cCchHHhcchH-hcCC--ccccccCCCCchHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHHH-HhcCCeEEE
Confidence 55555543222 3344 5899999999999999999866655 5669999999999999877666544 459999999
Q ss_pred EcCCCCcccccc-CCCcEEEECHhhH-HHHHhcc-c---cccccCcccEEEEecccccC
Q psy13788 779 LTGDVTPDIQAI-SSASVIVTTPEKW-DGVSRSW-Q---NRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 779 ~~g~~~~~~~~~-~~~~IiV~Tpe~l-~~l~~~~-~---~~~~l~~l~~lViDEaH~l~ 831 (1034)
+.++.+...+.. -.+||+++||..+ .++++.. . .....+.+.++|+||||.++
T Consensus 157 i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 157 NVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred ecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 998877654433 2799999999998 5566532 1 11123678899999999764
No 118
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.59 E-value=8.8e-14 Score=167.49 Aligned_cols=267 Identities=16% Similarity=0.170 Sum_probs=180.8
Q ss_pred HHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCc
Q psy13788 706 IFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTP 785 (1034)
Q Consensus 706 ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~ 785 (1034)
.+.++ +.+..++|++|||||||+---..++.... ..++++.+.-|.|--|...++++.+.++...|-.|+--. ..
T Consensus 58 i~~ai-~~~~vvii~getGsGKTTqlP~~lle~g~-~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i---Rf 132 (845)
T COG1643 58 ILKAI-EQNQVVIIVGETGSGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI---RF 132 (845)
T ss_pred HHHHH-HhCCEEEEeCCCCCChHHHHHHHHHhhhc-ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE---Ee
Confidence 34444 47778999999999999844333333322 335788899999988888888887776665454443211 11
Q ss_pred cccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q psy13788 786 DIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTAL 865 (1034)
Q Consensus 786 ~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl 865 (1034)
+........|-++|.+.|...+. ....+..+++||+||||. +.-....++..++.+....+.+.++|.||||+
T Consensus 133 e~~~s~~Trik~mTdGiLlrei~---~D~~Ls~ys~vIiDEaHE----RSl~tDilLgllk~~~~~rr~DLKiIimSATl 205 (845)
T COG1643 133 ESKVSPRTRIKVMTDGILLREIQ---NDPLLSGYSVVIIDEAHE----RSLNTDILLGLLKDLLARRRDDLKLIIMSATL 205 (845)
T ss_pred eccCCCCceeEEeccHHHHHHHh---hCcccccCCEEEEcchhh----hhHHHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 22223467899999999876664 466799999999999997 33444455666666556666779999999999
Q ss_pred CCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhh--CCCCCeEEEecChHHHHHH
Q psy13788 866 ANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQH--SPEKPVMIFVSSRRQTRLT 943 (1034)
Q Consensus 866 ~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~lVF~~s~~~~~~~ 943 (1034)
|.+.|+++++-. .+ +..+.|..|+++.+......++. ....+...+..+ ...+.+|||.+-.++.+.+
T Consensus 206 -d~~rfs~~f~~a--pv--i~i~GR~fPVei~Y~~~~~~d~~-----l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~ 275 (845)
T COG1643 206 -DAERFSAYFGNA--PV--IEIEGRTYPVEIRYLPEAEADYI-----LLDAIVAAVDIHLREGSGSILVFLPGQREIERT 275 (845)
T ss_pred -CHHHHHHHcCCC--CE--EEecCCccceEEEecCCCCcchh-----HHHHHHHHHHHhccCCCCCEEEECCcHHHHHHH
Confidence 678899998742 12 23345666777776433332221 111222222221 2356899999999999998
Q ss_pred HHHHHH-HHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEec
Q psy13788 944 AIDLIT-ILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINR 1022 (1034)
Q Consensus 944 a~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT 1022 (1034)
+..|.+ .+.. ..-|..+||.|+.++...+.+ - -..|+-+|++||
T Consensus 276 ~~~L~~~~l~~-------------------------------~~~i~PLy~~L~~~eQ~rvF~--p--~~~~~RKVVlAT 320 (845)
T COG1643 276 AEWLEKAELGD-------------------------------DLEILPLYGALSAEEQVRVFE--P--APGGKRKVVLAT 320 (845)
T ss_pred HHHHHhccccC-------------------------------CcEEeeccccCCHHHHHhhcC--C--CCCCcceEEEEc
Confidence 888876 2210 112788999999999988866 2 455656699999
Q ss_pred hhhhhcc
Q psy13788 1023 STSANGN 1029 (1034)
Q Consensus 1023 ~~l~~Gv 1029 (1034)
++++-++
T Consensus 321 NIAETSL 327 (845)
T COG1643 321 NIAETSL 327 (845)
T ss_pred cccccce
Confidence 9998776
No 119
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.57 E-value=3.2e-14 Score=178.11 Aligned_cols=223 Identities=17% Similarity=0.169 Sum_probs=124.8
Q ss_pred ccccccEEEEeeeecccC-CCCchHHHHHHhhhhcc-ccceeecccchhh----hhhHHHhhc----cc-----------
Q psy13788 4 LTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQI-GQEVFKGVKSLNR----IQSLVYDTA----YH----------- 62 (1034)
Q Consensus 4 ~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~----~~----------- 62 (1034)
+++++++|||||+|.+.+ +||..++.++.|+.+.. ...|++|+|++-. +........ .+
T Consensus 169 ~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k 248 (876)
T PRK13767 169 KLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVK 248 (876)
T ss_pred HHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCc
Confidence 568999999999999999 99999999999977665 4678999987522 111110000 00
Q ss_pred ----------------------------------cCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-e
Q psy13788 63 ----------------------------------TNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-Y 107 (1034)
Q Consensus 63 ----------------------------------~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ 107 (1034)
.+.+++||+++. .....++..+.+..... ....++ +
T Consensus 249 ~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr-----~~ae~la~~L~~~~~~~----~~~~~i~~ 319 (876)
T PRK13767 249 PFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTR-----SGAERVLYNLRKRFPEE----YDEDNIGA 319 (876)
T ss_pred cceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCH-----HHHHHHHHHHHHhchhh----ccccceee
Confidence 011233333321 00001111111111100 012456 4
Q ss_pred ecchhH-----HHHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhc
Q psy13788 108 VHIGIL-----DVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGR 181 (1034)
Q Consensus 108 ~h~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GR 181 (1034)
||+++. .+++.|..+ .+...++|.+++ .|||+|. .+||- |+ .+.++.+|.||+||
T Consensus 320 hHg~ls~~~R~~ve~~fk~G--------~i~vLVaTs~Le-~GIDip~Vd~VI~----~~------~P~sv~~ylQRiGR 380 (876)
T PRK13767 320 HHSSLSREVRLEVEEKLKRG--------ELKVVVSSTSLE-LGIDIGYIDLVVL----LG------SPKSVSRLLQRIGR 380 (876)
T ss_pred eeCCCCHHHHHHHHHHHHcC--------CCeEEEECChHH-hcCCCCCCcEEEE----eC------CCCCHHHHHHhccc
Confidence 566555 344455433 233444444444 2899997 44441 43 34577999999999
Q ss_pred cCCCCcc-ccceEEEECCcccHHHH--HHHh--cCCcceecccccchHHHHhhhhhcccccchhhHHHHHHHHHHHHHHH
Q psy13788 182 AGRPQYN-TSGHATIITPHEKLNHY--LSLL--TNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANL 256 (1034)
Q Consensus 182 AGR~~~d-~~G~~~i~~~~~~~~~y--~~~~--~~~~~i~s~l~~~~~~~ln~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1034)
|||.+-+ ..|..+.....+..+.+ .+.. +..+++.+.. ++.+++
T Consensus 381 aGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~-------------------------------~~~dvl 429 (876)
T PRK13767 381 AGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPK-------------------------------NPLDVL 429 (876)
T ss_pred CCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCC-------------------------------CcHHHH
Confidence 9996443 34554443333322211 1111 2222222111 234567
Q ss_pred hhhcccchhcccccCHHHHHHHhcccccee
Q psy13788 257 ADNLNAEVALGTIGNIDEAVRWLSYSYLHV 286 (1034)
Q Consensus 257 ~~~il~~i~~~~~~~~~~~~~~l~~T~~~~ 286 (1034)
..+++++++.+ ..+.+++.+|++.||.|.
T Consensus 430 ~q~i~~~~~~~-~~~~~~~~~~~~~~~~~~ 458 (876)
T PRK13767 430 AQHIVGMAIER-PWDIEEAYNIVRRAYPYR 458 (876)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHhccCCcc
Confidence 79999987775 679999999999999999
No 120
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.56 E-value=2.3e-13 Score=159.88 Aligned_cols=269 Identities=16% Similarity=0.124 Sum_probs=166.0
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
.|| .|...|.-....+. .|+..-+.||||.|||+-.++..+- ....+.+++||+||..|+.|.++++.+...+..+
T Consensus 79 ~G~-~~ws~QR~WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl~--~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~ 154 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLV-RGKSFAIIAPTGVGKTTFGLLMSLY--LAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGS 154 (1187)
T ss_pred hCC-CchHHHHHHHHHHH-cCCceEEEcCCCCchhHHHHHHHHH--HHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 356 59999999888888 8999999999999999855443332 2334799999999999999999999864433222
Q ss_pred CeEEE-EcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHH--
Q psy13788 774 KKVVE-LTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVS-- 843 (1034)
Q Consensus 774 ~~v~~-~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~-- 843 (1034)
..+.. ++|..+...+. ..+.||+|+|..-+..-+.... -.+++++++|.+|.++.. +.....++.
T Consensus 155 ~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~----~~kFdfifVDDVDA~Lka-skNvDriL~Ll 229 (1187)
T COG1110 155 LDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS----KLKFDFIFVDDVDAILKA-SKNVDRLLRLL 229 (1187)
T ss_pred cceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc----ccCCCEEEEccHHHHHhc-cccHHHHHHHc
Confidence 33333 67765544322 2368999999876543333111 136899999999976431 011111111
Q ss_pred ----------------H-----------HHHh--------hhccCCCeEEEEEccCCCC----HHHHHhHhcccCCceee
Q psy13788 844 ----------------R-----------VNFI--------SSYTKRNVRLVGLSTALAN----AKDLATWLNITKQGMYN 884 (1034)
Q Consensus 844 ----------------r-----------l~~l--------~~~~~~~~~iv~lSATl~~----~~~l~~~l~~~~~~~~~ 884 (1034)
+ ++.. .....+..++|..|||... ..-+.+.+|...
T Consensus 230 Gf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev----- 304 (1187)
T COG1110 230 GFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV----- 304 (1187)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc-----
Confidence 0 0000 0112345689999999765 245556665432
Q ss_pred cCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecC---hHHHHHHHHHHHHHHhccCCCCccc
Q psy13788 885 FRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSS---RRQTRLTAIDLITILACETNPKMWV 961 (1034)
Q Consensus 885 ~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s---~~~~~~~a~~L~~~~~~~~~~~~~~ 961 (1034)
......+...+..+... .....+.+.++.... -.|||++. ++.+++++..|...
T Consensus 305 ---G~~~~~LRNIvD~y~~~-------~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~----------- 361 (1187)
T COG1110 305 ---GSGGEGLRNIVDIYVES-------ESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSH----------- 361 (1187)
T ss_pred ---CccchhhhheeeeeccC-------ccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhc-----------
Confidence 22111121111111111 222345667777744 58999999 66566555555442
Q ss_pred CCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEech----hhhhccCCC
Q psy13788 962 HTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRS----TSANGNFDF 1032 (1034)
Q Consensus 962 ~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~----~l~~Gv~Df 1032 (1034)
+..+..+|++ .++..+. |..|++++||.+. ++-||+ |+
T Consensus 362 -----------------------Gi~a~~~~a~----~~~~le~-----F~~GeidvLVGvAsyYG~lVRGl-DL 403 (1187)
T COG1110 362 -----------------------GINAELIHAE----KEEALED-----FEEGEVDVLVGVASYYGVLVRGL-DL 403 (1187)
T ss_pred -----------------------CceEEEeecc----chhhhhh-----hccCceeEEEEecccccceeecC-Cc
Confidence 2236677773 2444544 9999999998865 689999 96
No 121
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=1.1e-13 Score=164.90 Aligned_cols=130 Identities=16% Similarity=0.139 Sum_probs=97.8
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+|.. |++.|.-.--.+ +.|+ +..+.||+|||+++.+|++..... +..+-+++|+--||.|-++.+...|.. +|
T Consensus 77 ~g~~-~~dvQlig~l~l-~~G~--iaEm~TGEGKTLvA~l~a~l~al~--G~~v~vvT~neyLA~Rd~e~~~~~~~~-LG 149 (796)
T PRK12906 77 LGLR-PFDVQIIGGIVL-HEGN--IAEMKTGEGKTLTATLPVYLNALT--GKGVHVVTVNEYLSSRDATEMGELYRW-LG 149 (796)
T ss_pred hCCC-CchhHHHHHHHH-hcCC--cccccCCCCCcHHHHHHHHHHHHc--CCCeEEEeccHHHHHhhHHHHHHHHHh-cC
Confidence 4433 666776654444 4664 999999999999999998877665 789999999999999999988877766 89
Q ss_pred CeEEEEcCCCCccccc-cCCCcEEEECHhhH-HHHHhc-c---ccccccCcccEEEEeccccc
Q psy13788 774 KKVVELTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRS-W---QNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~-~---~~~~~l~~l~~lViDEaH~l 830 (1034)
++++.++|+.+...+. .-.+||+.+|...+ .+.++. . ......+.+.+.||||+|.+
T Consensus 150 l~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSi 212 (796)
T PRK12906 150 LTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSI 212 (796)
T ss_pred CeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhe
Confidence 9999999887655433 45899999999887 233332 1 11222356789999999965
No 122
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.56 E-value=9e-14 Score=164.97 Aligned_cols=298 Identities=21% Similarity=0.247 Sum_probs=183.8
Q ss_pred CChhHHHHHHHHhcC---CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCe
Q psy13788 699 FNPIQTQIFHCLYHT---DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~---~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~ 775 (1034)
+++-|..|+..+..+ -...++.+.||||||.+|+-.+-..+.+ |..+|+++|-++|..|+..+++.+|+ .+
T Consensus 199 Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~rFg----~~ 272 (730)
T COG1198 199 LNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--GKQVLVLVPEIALTPQLLARFKARFG----AK 272 (730)
T ss_pred cCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--CCEEEEEeccccchHHHHHHHHHHhC----CC
Confidence 788999999998744 3679999999999999999999988887 79999999999999999998888776 57
Q ss_pred EEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccC--CCChhHH--HHHHHH
Q psy13788 776 VVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG--EDRGPVL--EVIVSR 844 (1034)
Q Consensus 776 v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~--~~~~~~~--~~il~r 844 (1034)
+..++++.+...+. ...+.|+|+|=-. -...++++++||+||=|--. ...++.| +.+- .
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA---------lF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA-~ 342 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA---------LFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA-V 342 (730)
T ss_pred hhhhcccCChHHHHHHHHHHhcCCceEEEEechh---------hcCchhhccEEEEeccccccccCCcCCCcCHHHHH-H
Confidence 88899887765443 2578999999432 23457899999999999642 2112211 2111 1
Q ss_pred HHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCC--ceeecCCCC-cccccEEEEecCCCCCCchhhhhccHHHHHHH
Q psy13788 845 VNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ--GMYNFRPSV-RPVPLEVHISGFPGKQYCPRMAKMNKPIYTAI 921 (1034)
Q Consensus 845 l~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~--~~~~~~~~~-r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 921 (1034)
+ .....++++|+-|||++ +..|...... ....+.... +..+..+.+.+......... ......+++.+
T Consensus 343 ~----Ra~~~~~pvvLgSATPS----LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~lS~~Ll~~i 413 (730)
T COG1198 343 L----RAKKENAPVVLGSATPS----LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RSLSPALLEAI 413 (730)
T ss_pred H----HHHHhCCCEEEecCCCC----HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccC-ccCCHHHHHHH
Confidence 1 11234788999999985 3444433222 122222211 12233444443322221111 01445667777
Q ss_pred Hh-hCCCCCeEEEecChHHH--------HHHH------HHH----------HHHHhcc-CCCCcccCCC----------h
Q psy13788 922 KQ-HSPEKPVMIFVSSRRQT--------RLTA------IDL----------ITILACE-TNPKMWVHTS----------D 965 (1034)
Q Consensus 922 ~~-~~~~~~~lVF~~s~~~~--------~~~a------~~L----------~~~~~~~-~~~~~~~~~~----------~ 965 (1034)
++ ...+.++|+|.|.|--+ ..++ ..| ..+|... ..|..|.+|. .
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 53 35678999999988532 1111 000 0011111 1223333332 2
Q ss_pred HHHHHHHhhcCCHHHHHHh-hhchhhhcCCCCHHHH--HHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 966 AEMDNIVDNIKDSNLKLTI-AFGIGFHHAAAEAAQS--SALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 966 ~~~~~~~~~i~d~~l~~~l-~~gv~~~h~~~~~~~R--~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
+.+++. |+..+ ...|..+.++.+.... +.. +..|.+|+.+|||.|+.++.|. ||-+
T Consensus 494 erieee--------L~~~FP~~rv~r~d~Dtt~~k~~~~~~----l~~~~~ge~dILiGTQmiaKG~-~fp~ 552 (730)
T COG1198 494 ERIEEE--------LKRLFPGARIIRIDSDTTRRKGALEDL----LDQFANGEADILIGTQMIAKGH-DFPN 552 (730)
T ss_pred HHHHHH--------HHHHCCCCcEEEEccccccchhhHHHH----HHHHhCCCCCeeecchhhhcCC-Cccc
Confidence 223222 33333 2346666666655443 233 2239999999999999999999 9964
No 123
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=2.1e-14 Score=171.17 Aligned_cols=131 Identities=17% Similarity=0.146 Sum_probs=105.8
Q ss_pred ccCCC---ChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhh
Q psy13788 695 KFSHF---NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771 (1034)
Q Consensus 695 ~~~~~---~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~ 771 (1034)
||..| +|+|.|+++.+. .++++++.|+||+|||++|.+|++..+.. +..++||+||++||.|..+.+. .+.+.
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~-l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--g~~v~IVTpTrELA~Qdae~m~-~L~k~ 161 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIA-MHKGFITEMQTGEGKTLTAVMPLYLNALT--GKPVHLVTVNDYLAQRDCEWVG-SVLRW 161 (970)
T ss_pred cccCCCCCChHHHHHhhhhh-cCCCeEEEeCCCCChHHHHHHHHHHHHhh--cCCeEEEeCCHHHHHHHHHHHH-HHHhh
Confidence 45555 999999999987 78899999999999999999999977655 3458999999999999887766 45566
Q ss_pred cCCeEEEEcCCCCccccc-cCCCcEEEECHhhH-HHHHhcccccccc-------CcccEEEEecccccC
Q psy13788 772 LKKKVVELTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRSWQNRNYV-------QSVALIIIDEIHLLG 831 (1034)
Q Consensus 772 ~~~~v~~~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~~~~~~~l-------~~l~~lViDEaH~l~ 831 (1034)
+|++++.+.|+.+...+. .-.+||+|+||+++ ..+++. +...+ +.+.++|+||||.++
T Consensus 162 lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd--~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 162 LGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRD--NSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred cCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhC--CCCCcCHHHhhcccccEEEEechhhhh
Confidence 899999999988766543 23699999999999 777774 21222 356899999999763
No 124
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.54 E-value=1.7e-13 Score=166.81 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=97.9
Q ss_pred CChhHHHHHHHHhc---C------CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 699 FNPIQTQIFHCLYH---T------DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~---~------~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
++++|..|+..+.+ . .+..++.+|||||||+++...+...+...+.+++|+|+|+.+|..|+.+.+.....
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 78899999977642 1 35799999999999999887776666555678999999999999999998875321
Q ss_pred hhcCCeEEEEcCCCCccccc--cCCCcEEEECHhhHHHHHhccccccccCcc-cEEEEecccccCCCChhHHHHHHHHHH
Q psy13788 770 ARLKKKVVELTGDVTPDIQA--ISSASVIVTTPEKWDGVSRSWQNRNYVQSV-ALIIIDEIHLLGEDRGPVLEVIVSRVN 846 (1034)
Q Consensus 770 ~~~~~~v~~~~g~~~~~~~~--~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l-~~lViDEaH~l~~~~~~~~~~il~rl~ 846 (1034)
. .+. ..++...-... ....+|+|+|.+++......+........- -+||+||||+... + .+...+.
T Consensus 319 ~----~~~-~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~-~~~~~l~--- 387 (667)
T TIGR00348 319 D----CAE-RIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--G-ELAKNLK--- 387 (667)
T ss_pred C----CCc-ccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--h-HHHHHHH---
Confidence 1 000 01110000011 124689999999996533321111111111 2899999999653 1 2222221
Q ss_pred HhhhccCCCeEEEEEccCCCC
Q psy13788 847 FISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 847 ~l~~~~~~~~~iv~lSATl~~ 867 (1034)
... ++..++|||||+-.
T Consensus 388 ---~~~-p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 388 ---KAL-KNASFFGFTGTPIF 404 (667)
T ss_pred ---hhC-CCCcEEEEeCCCcc
Confidence 112 35679999999854
No 125
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.51 E-value=2.7e-13 Score=172.30 Aligned_cols=167 Identities=17% Similarity=0.147 Sum_probs=102.6
Q ss_pred eecchhH-----HHHHHhhhcC-CCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHh
Q psy13788 107 YVHIGIL-----DVLQIFGRAG-RPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIF 179 (1034)
Q Consensus 107 ~~h~~~~-----~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~ 179 (1034)
.||.++. .+++.|..+. +..+||++|+. |||+|+ .+||. |+ .+.++.+|+||+
T Consensus 306 ~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLEL----------GIDIg~VDlVIq----~g------sP~sVas~LQRi 365 (1490)
T PRK09751 306 SHHGSVSKEQRAITEQALKSGELRCVVATSSLEL----------GIDMGAVDLVIQ----VA------TPLSVASGLQRI 365 (1490)
T ss_pred eccccCCHHHHHHHHHHHHhCCceEEEeCcHHHc----------cCCcccCCEEEE----eC------CCCCHHHHHHHh
Confidence 4556555 3555564432 33335555555 899997 44442 33 467889999999
Q ss_pred hccCCCCccccceEEEECCcccHHHHHHHhcCCcceecccccchHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhh
Q psy13788 180 GRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADN 259 (1034)
Q Consensus 180 GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~~~~~i~s~l~~~~~~~ln~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1034)
|||||+ .+..+.+++++.+.. .+.. ...++++.+...+ |.+ .+.-++.+++..|
T Consensus 366 GRAGR~-~gg~s~gli~p~~r~--dlle---~~~~ve~~l~g~i-E~~-------------------~~p~nplDVLaqq 419 (1490)
T PRK09751 366 GRAGHQ-VGGVSKGLFFPRTRR--DLVD---SAVIVECMFAGRL-ENL-------------------TPPHNPLDVLAQQ 419 (1490)
T ss_pred CCCCCC-CCCccEEEEEeCcHH--HHHh---hHHHHHHHhcCCC-Ccc-------------------CCCCChHHHHHHH
Confidence 999997 677788888777632 2221 1112222221110 111 1112566789999
Q ss_pred cccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHhhh----------cCce
Q psy13788 260 LNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDK----------AHMI 329 (1034)
Q Consensus 260 il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~----------~~~i 329 (1034)
|+++++.+. -+.+++.+.++.+|-|.. .-.+..+..++.|.. ..-|
T Consensus 420 iva~a~~~~-~~~d~l~~~vrra~pf~~-----------------------L~~~~f~~vl~~L~~~y~~~~~~~~~~ri 475 (1490)
T PRK09751 420 TVAAAAMDA-LQVDEWYSRVRRAAPWKD-----------------------LPRRVFDATLDMLSGRYPSGDFSAFRPKL 475 (1490)
T ss_pred HHHHHhcCC-CCHHHHHHHhhccCCccc-----------------------CCHHHHHHHHHHHhcccccccccccccee
Confidence 999999754 568999999999999981 123445667777775 1234
Q ss_pred EEecCCCCcccChH
Q psy13788 330 RFNMRTRDLAITDL 343 (1034)
Q Consensus 330 ~~~~~~~~~~~T~l 343 (1034)
.+|..++.+..++-
T Consensus 476 ~~d~~~~~l~~r~g 489 (1490)
T PRK09751 476 VWNRETGILTARPG 489 (1490)
T ss_pred EEecCCCeEEEChH
Confidence 45554666777743
No 126
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.51 E-value=9.1e-14 Score=142.83 Aligned_cols=152 Identities=22% Similarity=0.262 Sum_probs=99.5
Q ss_pred CChhHHHHHHHHhc------CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 699 FNPIQTQIFHCLYH------TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~------~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
|+|+|.+|+..+.+ ..+++++.+|||||||.++...+.+... ++++++|+..|+.|+...+........
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~~~~~~~ 78 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFDDFGSEKY 78 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHHHSTTSE
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHHhhhhhh
Confidence 89999999988763 2588999999999999999877666643 999999999999999988853332211
Q ss_pred CCeEEEE----------cCCCCcc---ccccCCCcEEEECHhhHHHHHhcc---------ccccccCcccEEEEeccccc
Q psy13788 773 KKKVVEL----------TGDVTPD---IQAISSASVIVTTPEKWDGVSRSW---------QNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 773 ~~~v~~~----------~g~~~~~---~~~~~~~~IiV~Tpe~l~~l~~~~---------~~~~~l~~l~~lViDEaH~l 830 (1034)
....... ....... .......+++++|..++....... .........++||+||||++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~ 158 (184)
T PF04851_consen 79 NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHY 158 (184)
T ss_dssp EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCT
T ss_pred hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhc
Confidence 1100000 0000000 011346789999999996655421 11223456789999999998
Q ss_pred CCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 831 GEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 831 ~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
.... .++.++. .....+|+||||+.
T Consensus 159 ~~~~--~~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 159 PSDS--SYREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp HHHH--HHHHHHH---------SSCCEEEEEESS-S
T ss_pred CCHH--HHHHHHc---------CCCCeEEEEEeCcc
Confidence 6421 1444443 35677999999985
No 127
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.51 E-value=4.1e-13 Score=155.75 Aligned_cols=153 Identities=20% Similarity=0.140 Sum_probs=106.5
Q ss_pred CCCChhHHHHHHHHh----cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 697 SHFNPIQTQIFHCLY----HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~----~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
..++.+|..|+..+. +..+.+++++.||+|||.++..-+.+.++....+++|+++-+++|+.|.+..+...+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~-- 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF-- 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC--
Confidence 459999999996643 23345999999999999999888888887777899999999999999998887654443
Q ss_pred CCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhcc---ccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhh
Q psy13788 773 KKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSW---QNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFIS 849 (1034)
Q Consensus 773 ~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~---~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~ 849 (1034)
+-.+..+.+.. . ...++|.++|..++....... ..+.....+++||+||||+=.- ..++.++..+..+
T Consensus 242 ~~~~n~i~~~~-~----~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~---~~~~~I~dYFdA~- 312 (875)
T COG4096 242 GTKMNKIEDKK-G----DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY---SEWSSILDYFDAA- 312 (875)
T ss_pred ccceeeeeccc-C----CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH---hhhHHHHHHHHHH-
Confidence 22233333211 1 125799999999986665532 1223345689999999998432 3344555433221
Q ss_pred hccCCCeEEEEEccCCCCH
Q psy13788 850 SYTKRNVRLVGLSTALANA 868 (1034)
Q Consensus 850 ~~~~~~~~iv~lSATl~~~ 868 (1034)
.+++|||+.+.
T Consensus 313 --------~~gLTATP~~~ 323 (875)
T COG4096 313 --------TQGLTATPKET 323 (875)
T ss_pred --------HHhhccCcccc
Confidence 35779998763
No 128
>KOG0922|consensus
Probab=99.50 E-value=2.1e-12 Score=146.71 Aligned_cols=270 Identities=14% Similarity=0.164 Sum_probs=179.5
Q ss_pred HHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC---CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcC
Q psy13788 705 QIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC---PEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTG 781 (1034)
Q Consensus 705 ~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~---~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g 781 (1034)
+.+..+ +.+..++|.++||||||+ ++| +.+.+. ..+++.+..|+|--|...++++...++..+|-.|+-..-
T Consensus 58 ~il~~v-e~nqvlIviGeTGsGKST--Qip--QyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR 132 (674)
T KOG0922|consen 58 QILYAV-EDNQVLIVIGETGSGKST--QIP--QYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR 132 (674)
T ss_pred HHHHHH-HHCCEEEEEcCCCCCccc--cHh--HHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE
Confidence 445555 477889999999999998 333 223221 245588899999888888888777666555555543221
Q ss_pred CCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEE
Q psy13788 782 DVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGL 861 (1034)
Q Consensus 782 ~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~l 861 (1034)
.+........|.+.|-+.|..-. .....+.+.+.||+||||. +.-.-..++.-++.+. ...++.++|.+
T Consensus 133 ---Fed~ts~~TrikymTDG~LLRE~---l~Dp~LskYsvIIlDEAHE----Rsl~TDiLlGlLKki~-~~R~~LklIim 201 (674)
T KOG0922|consen 133 ---FEDSTSKDTRIKYMTDGMLLREI---LKDPLLSKYSVIILDEAHE----RSLHTDILLGLLKKIL-KKRPDLKLIIM 201 (674)
T ss_pred ---ecccCCCceeEEEecchHHHHHH---hcCCccccccEEEEechhh----hhhHHHHHHHHHHHHH-hcCCCceEEEE
Confidence 12122236789999999874433 3466789999999999996 2222333444444442 34457899999
Q ss_pred ccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHH
Q psy13788 862 STALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTR 941 (1034)
Q Consensus 862 SATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~ 941 (1034)
|||+ |++.+.+|++.- .+ +.-..|..|+++.+...+..+|....-. .+. .|....+.+-+|||.+..++.+
T Consensus 202 SATl-da~kfS~yF~~a--~i--~~i~GR~fPVei~y~~~p~~dYv~a~~~---tv~-~Ih~~E~~GDILvFLtGqeEIe 272 (674)
T KOG0922|consen 202 SATL-DAEKFSEYFNNA--PI--LTIPGRTFPVEILYLKEPTADYVDAALI---TVI-QIHLTEPPGDILVFLTGQEEIE 272 (674)
T ss_pred eeee-cHHHHHHHhcCC--ce--EeecCCCCceeEEeccCCchhhHHHHHH---HHH-HHHccCCCCCEEEEeCCHHHHH
Confidence 9999 688899998752 12 2334566777777776555555433211 112 2222245668999999999999
Q ss_pred HHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEe
Q psy13788 942 LTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVIN 1021 (1034)
Q Consensus 942 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVa 1021 (1034)
.++..|.+......... +.-+..+||.|+.+++..|.. - -..|.-+|+++
T Consensus 273 ~~~~~l~e~~~~~~~~~--------------------------~~~~lply~aL~~e~Q~rvF~--p--~p~g~RKvIls 322 (674)
T KOG0922|consen 273 AACELLRERAKSLPEDC--------------------------PELILPLYGALPSEEQSRVFD--P--APPGKRKVILS 322 (674)
T ss_pred HHHHHHHHHhhhccccC--------------------------cceeeeecccCCHHHhhcccc--C--CCCCcceEEEE
Confidence 99988877654322100 001567999999999999866 3 55688999999
Q ss_pred chhhhhcc
Q psy13788 1022 RSTSANGN 1029 (1034)
Q Consensus 1022 T~~l~~Gv 1029 (1034)
|++++-.+
T Consensus 323 TNIAETSl 330 (674)
T KOG0922|consen 323 TNIAETSL 330 (674)
T ss_pred cceeeeeE
Confidence 99987654
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.50 E-value=2e-12 Score=159.96 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=62.3
Q ss_pred CChhHHHHHHH---HhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCe
Q psy13788 699 FNPIQTQIFHC---LYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775 (1034)
Q Consensus 699 ~~~~Q~~ai~~---l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~ 775 (1034)
+||-|.+.... .+..+..+++.|+||+|||++|++|++... .+.++||.+||++|++|.+.+-...+.+.++++
T Consensus 246 ~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~ 322 (820)
T PRK07246 246 ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---DQRQIIVSVPTKILQDQIMAEEVKAIQEVFHID 322 (820)
T ss_pred cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHHHHHHhcCCc
Confidence 89999995544 345778899999999999999999988653 367999999999999999644444566666666
Q ss_pred EEEEcC
Q psy13788 776 VVELTG 781 (1034)
Q Consensus 776 v~~~~g 781 (1034)
+..+.|
T Consensus 323 ~~~~kg 328 (820)
T PRK07246 323 CHSLKG 328 (820)
T ss_pred EEEEEC
Confidence 655443
No 130
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.49 E-value=5.1e-13 Score=130.37 Aligned_cols=141 Identities=26% Similarity=0.326 Sum_probs=103.2
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cC
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---IS 791 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~ 791 (1034)
+++++.+|||+|||.++..++.+.....+..+++|++|+++++.|....+...+.. +..+..+.+........ ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 46899999999999999999988877666789999999999999988887765543 56777777765444322 45
Q ss_pred CCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q psy13788 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTAL 865 (1034)
Q Consensus 792 ~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl 865 (1034)
..+|+++|++.+...... ........+++|+||+|.+......... .. .........+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~--~~~~~~~~~~iiiDE~h~~~~~~~~~~~--~~----~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELER--LKLSLKKLDLLILDEAHRLLNQGFGLLG--LK----ILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHc--CCcchhcCCEEEEeCHHHHhhcchHHHH--HH----HHhhCCccceEEEEeccC
Confidence 789999999998665553 2234567889999999999762211111 00 012235678899999996
No 131
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.46 E-value=1.4e-13 Score=164.30 Aligned_cols=260 Identities=18% Similarity=0.167 Sum_probs=160.0
Q ss_pred ccccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh----hhhHHHhhc---------cccCCceEE
Q psy13788 4 LTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR----IQSLVYDTA---------YHTNENLLI 69 (1034)
Q Consensus 4 ~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------~~~~~~~~v 69 (1034)
.+++|++|||||||-+.+ +||+.|-..+.|+....+.+|.||+|++-. +..+..-.. +...-.+-|
T Consensus 146 ~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v 225 (814)
T COG1201 146 LLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKV 225 (814)
T ss_pred HhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEE
Confidence 468999999999999999 999999999999877777899999987321 111111110 000111333
Q ss_pred eccCCc----chh-HHHHHHHHHHHHHHhhcccccee---------------ccccceecchhH------HHHHHhhhcC
Q psy13788 70 CAPTGA----GKT-NVAMLTIAHQIKQHISQGTEMYN---------------AKHGCYVHIGIL------DVLQIFGRAG 123 (1034)
Q Consensus 70 ~~~~~~----~k~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~g~~~h~~~~------~~~~~~~~~~ 123 (1034)
..|... +.. ...+..+...+.++.. ...+.| ....+.+|||.+ ++++.|.++.
T Consensus 226 ~~p~~~~~~~~~~~~~~~~~i~~~v~~~~t-tLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~ 304 (814)
T COG1201 226 ISPVEDLIYDEELWAALYERIAELVKKHRT-TLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE 304 (814)
T ss_pred EecCCccccccchhHHHHHHHHHHHhhcCc-EEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC
Confidence 333222 000 1111111111111110 000000 114567788766 5667775544
Q ss_pred -CCccccccccccccchhhhccCcccceEEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccH
Q psy13788 124 -RPQYNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKL 202 (1034)
Q Consensus 124 -~~~~~~~~l~~~~~~~~~~~~gvn~pa~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~ 202 (1034)
+..+|||+|+.+++-|.+.. || ++. .+.+++-.+|++||||+ +.+..-++++++.+-
T Consensus 305 lravV~TSSLELGIDiG~vdl--------VI----q~~-------SP~sV~r~lQRiGRsgH-r~~~~Skg~ii~~~r-- 362 (814)
T COG1201 305 LKAVVATSSLELGIDIGDIDL--------VI----QLG-------SPKSVNRFLQRIGRAGH-RLGEVSKGIIIAEDR-- 362 (814)
T ss_pred ceEEEEccchhhccccCCceE--------EE----EeC-------CcHHHHHHhHhcccccc-ccCCcccEEEEecCH--
Confidence 55669999999877655552 44 333 45567999999999999 888888999999882
Q ss_pred HHHHHHhcCCcceecccccchHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccc
Q psy13788 203 NHYLSLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYS 282 (1034)
Q Consensus 203 ~~y~~~~~~~~~i~s~l~~~~~~~ln~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T 282 (1034)
++++.-. .+-.+......|. ....=++++++++++++++..+ ..+++++.+.++++
T Consensus 363 ~dllE~~----vi~~~a~~g~le~-------------------~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrra 418 (814)
T COG1201 363 DDLLECL----VLADLALEGKLER-------------------IKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRA 418 (814)
T ss_pred HHHHHHH----HHHHHHHhCCccc-------------------CCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhc
Confidence 2333200 0000000100010 0112267889999999998888 88999999999999
Q ss_pred cceeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHhhh--cCceEEec
Q psy13788 283 YLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDK--AHMIRFNM 333 (1034)
Q Consensus 283 ~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~--~~~i~~~~ 333 (1034)
|-|. +.-.+...+.+++|.. .+.++...
T Consensus 419 ypy~-----------------------~L~~e~f~~v~~~l~~~~~~~~~i~~ 448 (814)
T COG1201 419 YPYA-----------------------DLSREDFRLVLRYLAGEKNVYAKIWL 448 (814)
T ss_pred cccc-----------------------cCCHHHHHHHHHHHhhcccceeEEee
Confidence 9999 2223556788888888 77776653
No 132
>KOG4150|consensus
Probab=99.38 E-value=3.6e-12 Score=139.85 Aligned_cols=300 Identities=11% Similarity=-0.003 Sum_probs=196.1
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhh---cCCe
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR---LKKK 775 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~---~~~~ 775 (1034)
+..+|.+++..+- +|+++++.-.|.+||++++.+.....+...+....+++.|++++++.+.+.+.-.+... -+.-
T Consensus 287 ~~~~~~~~~~~~~-~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~ 365 (1034)
T KOG4150|consen 287 GIAISLELLKFAS-EGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAY 365 (1034)
T ss_pred hhhhhHHHHhhhh-hcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhcce
Confidence 6779999999885 89999999999999999999998888777778899999999999987543322111110 1112
Q ss_pred EEEEcCCCCccccc--cCCCcEEEECHhhHHH--HHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhc
Q psy13788 776 VVELTGDVTPDIQA--ISSASVIVTTPEKWDG--VSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSY 851 (1034)
Q Consensus 776 v~~~~g~~~~~~~~--~~~~~IiV~Tpe~l~~--l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~ 851 (1034)
+....|+..+.... ..+.+++++.|+.... +-........+-...++++||+|.+...++......++++..+...
T Consensus 366 V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~ 445 (1034)
T KOG4150|consen 366 VEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKG 445 (1034)
T ss_pred eecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHH
Confidence 33344544444333 3478999999998732 2222233344556778999999999877888887777777655332
Q ss_pred --cCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCCcccccEEEEec-CCCCCCchh---hhhccHHHHHHHHhh
Q psy13788 852 --TKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSVRPVPLEVHISG-FPGKQYCPR---MAKMNKPIYTAIKQH 924 (1034)
Q Consensus 852 --~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~-~~~~~~~~~---~~~~~~~~~~~l~~~ 924 (1034)
.+.+.+++-.|||+.++ +...+..++....++..+.+.....+-+.-.+ .+......+ .....+.+.+.+
T Consensus 446 F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i--- 522 (1034)
T KOG4150|consen 446 FEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMV--- 522 (1034)
T ss_pred HHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHH---
Confidence 24578899999999875 45556666665554443322221111111100 000111111 111111122222
Q ss_pred CCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhc
Q psy13788 925 SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQ 1004 (1034)
Q Consensus 925 ~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie 1004 (1034)
..+-++|-||++|+-|+.+.....+.+.... +.| --.|..|.||...+||+.||
T Consensus 523 ~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~----------------------~~L----V~~i~SYRGGY~A~DRRKIE 576 (1034)
T KOG4150|consen 523 QHGLRCIAFCPSRKLCELVLCLTREILAETA----------------------PHL----VEAITSYRGGYIAEDRRKIE 576 (1034)
T ss_pred HcCCcEEEeccHHHHHHHHHHHHHHHHHHhh----------------------HHH----HHHHHhhcCccchhhHHHHH
Confidence 2366899999999999977665555443321 011 11267899999999999999
Q ss_pred ccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 1005 MPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1005 ~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
. . .-.|++.-+|||++++.|| |+-
T Consensus 577 ~--~--~F~G~L~giIaTNALELGI-DIG 600 (1034)
T KOG4150|consen 577 S--D--LFGGKLCGIIATNALELGI-DIG 600 (1034)
T ss_pred H--H--hhCCeeeEEEecchhhhcc-ccc
Confidence 8 7 8889999999999999999 973
No 133
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.34 E-value=8.9e-11 Score=148.28 Aligned_cols=64 Identities=20% Similarity=0.212 Sum_probs=53.5
Q ss_pred CChhHHHHHHHH---hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHH
Q psy13788 699 FNPIQTQIFHCL---YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVAD 763 (1034)
Q Consensus 699 ~~~~Q~~ai~~l---~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~ 763 (1034)
+||-|.+....+ +..++.+++.||||+|||++|++|++..... .+.+++|-++|++|.+|.+.+
T Consensus 258 ~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~-~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 258 KREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK-KEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc-cCCeEEEEcCCHHHHHHHHHh
Confidence 899999966543 4477889999999999999999999765443 478999999999999998664
No 134
>KOG1123|consensus
Probab=99.28 E-value=5e-12 Score=137.21 Aligned_cols=282 Identities=16% Similarity=0.274 Sum_probs=163.9
Q ss_pred CCCChhHHHHHHHHhcCC--CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 697 SHFNPIQTQIFHCLYHTD--NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~~~~--~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
..++|+|.+.+...+.+| +..+|+.|.|+|||++..-++... +.++|+++.+---+.||..++. .+...-+-
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-----kK~clvLcts~VSVeQWkqQfk-~wsti~d~ 374 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-----KKSCLVLCTSAVSVEQWKQQFK-QWSTIQDD 374 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-----cccEEEEecCccCHHHHHHHHH-hhcccCcc
Confidence 348999999999998655 469999999999999887766544 6799999999888888776665 34443456
Q ss_pred eEEEEcCCCCccccccCCCcEEEECHhhHHHHH-hcccccc-----ccCcccEEEEecccccCCCChhHHHHHHHHHHHh
Q psy13788 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVS-RSWQNRN-----YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFI 848 (1034)
Q Consensus 775 ~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~-~~~~~~~-----~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l 848 (1034)
.++.++.+..... ..++.|+|+|..++..-- |.|.... .-+..+++++||+|.+.. ..++.+++-+.
T Consensus 375 ~i~rFTsd~Ke~~--~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA---~MFRRVlsiv~-- 447 (776)
T KOG1123|consen 375 QICRFTSDAKERF--PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA---KMFRRVLSIVQ-- 447 (776)
T ss_pred ceEEeeccccccC--CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH---HHHHHHHHHHH--
Confidence 6777887654432 347899999998773222 2221111 125578999999999875 33344443332
Q ss_pred hhccCCCeEEEEEccCCCCHHHH--------------HhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhcc
Q psy13788 849 SSYTKRNVRLVGLSTALANAKDL--------------ATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMN 914 (1034)
Q Consensus 849 ~~~~~~~~~iv~lSATl~~~~~l--------------~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 914 (1034)
..+ -+|||||+-..+|- +.|+.+...+.+. .+.. ......|.
T Consensus 448 -----aHc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA----------~VqC--------aEVWCpMt 503 (776)
T KOG1123|consen 448 -----AHC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIA----------KVQC--------AEVWCPMT 503 (776)
T ss_pred -----HHh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCcee----------EEee--------eeeecCCC
Confidence 122 37999998764332 2333322211110 0000 00111223
Q ss_pred HHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCC
Q psy13788 915 KPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAA 994 (1034)
Q Consensus 915 ~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~ 994 (1034)
...|.........++.+.|+-....-+ .++.|+++-...++....+..+.-.+..+.=. -|--+++|.
T Consensus 504 ~eFy~eYL~~~t~kr~lLyvMNP~KFr-aCqfLI~~HE~RgDKiIVFsDnvfALk~YAik-----------l~KpfIYG~ 571 (776)
T KOG1123|consen 504 PEFYREYLRENTRKRMLLYVMNPNKFR-ACQFLIKFHERRGDKIIVFSDNVFALKEYAIK-----------LGKPFIYGP 571 (776)
T ss_pred HHHHHHHHhhhhhhhheeeecCcchhH-HHHHHHHHHHhcCCeEEEEeccHHHHHHHHHH-----------cCCceEECC
Confidence 333322222222334444443332221 33444444444443333333333333333222 234579999
Q ss_pred CCHHHHHHhcccchhHhhc-CCceEEEechhhhhccCCC
Q psy13788 995 AEAAQSSALQMPKLAALSS-KENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 995 ~~~~~R~~ie~~~l~~f~~-g~i~VLVaT~~l~~Gv~Df 1032 (1034)
.++.+|..|.+ . |+. ..++.++-+.+..-.+ |+
T Consensus 572 Tsq~ERm~ILq--n--Fq~n~~vNTIFlSKVgDtSi-DL 605 (776)
T KOG1123|consen 572 TSQNERMKILQ--N--FQTNPKVNTIFLSKVGDTSI-DL 605 (776)
T ss_pred CchhHHHHHHH--h--cccCCccceEEEeeccCccc-cC
Confidence 99999988876 5 875 4677777777777777 75
No 135
>KOG0920|consensus
Probab=99.28 E-value=9.3e-11 Score=140.90 Aligned_cols=282 Identities=12% Similarity=0.147 Sum_probs=174.7
Q ss_pred ChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHH-HHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRV-FKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 700 ~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~-l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
...+.+.+.++. ++..+++++.||+|||+-.---++.. +..++..++++-.|+|--|-..++++...-+...|..|+-
T Consensus 175 ~~~r~~Il~~i~-~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 175 YKMRDTILDAIE-ENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred HHHHHHHHHHHH-hCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 445666677774 78889999999999998554445544 3444567788888999877777777766555545544332
Q ss_pred EcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEE
Q psy13788 779 LTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRL 858 (1034)
Q Consensus 779 ~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~i 858 (1034)
-.+- +.+......+.+||.+.+...+. ....+..+..+|+||+|.=.-. ..-+..++..+ -...++.++
T Consensus 254 qvrl---~~~~s~~t~L~fcTtGvLLr~L~---~~~~l~~vthiivDEVHER~i~-~DflLi~lk~l----L~~~p~Lkv 322 (924)
T KOG0920|consen 254 QVRL---ESKRSRETRLLFCTTGVLLRRLQ---SDPTLSGVTHIIVDEVHERSIN-TDFLLILLKDL----LPRNPDLKV 322 (924)
T ss_pred EEee---ecccCCceeEEEecHHHHHHHhc---cCcccccCceeeeeeEEEccCC-cccHHHHHHHH----hhhCCCceE
Confidence 2221 11122347899999998765554 4677899999999999974321 11122222222 223478999
Q ss_pred EEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEe-------cC---CCCCC----------------ch-hhh
Q psy13788 859 VGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHIS-------GF---PGKQY----------------CP-RMA 911 (1034)
Q Consensus 859 v~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~-------~~---~~~~~----------------~~-~~~ 911 (1034)
|+||||+ |.+.+..|++... +... ..+..|+..++. .+ +...+ .+ ...
T Consensus 323 ILMSAT~-dae~fs~YF~~~p--vi~i--~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 397 (924)
T KOG0920|consen 323 ILMSATL-DAELFSDYFGGCP--VITI--PGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDY 397 (924)
T ss_pred EEeeeec-chHHHHHHhCCCc--eEee--cCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccH
Confidence 9999999 5788999987322 1111 111111111000 00 00000 00 001
Q ss_pred hccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhh
Q psy13788 912 KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFH 991 (1034)
Q Consensus 912 ~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~ 991 (1034)
.+...+...+......+.+|||.+.......+...|......... ..+-+...
T Consensus 398 ~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~---------------------------~~~~ilpl 450 (924)
T KOG0920|consen 398 DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS---------------------------LKFAILPL 450 (924)
T ss_pred HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc---------------------------cceEEEec
Confidence 111122333333345678999999999999888777543332211 02237889
Q ss_pred cCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhcc
Q psy13788 992 HAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGN 1029 (1034)
Q Consensus 992 h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv 1029 (1034)
|+.|+..+++.|.+ . --.|.-+|++||+.++-.|
T Consensus 451 Hs~~~s~eQ~~VF~--~--pp~g~RKIIlaTNIAETSI 484 (924)
T KOG0920|consen 451 HSSIPSEEQQAVFK--R--PPKGTRKIILATNIAETSI 484 (924)
T ss_pred cccCChHHHHHhcC--C--CCCCcchhhhhhhhHhhcc
Confidence 99999999999966 5 6778899999999988776
No 136
>KOG0923|consensus
Probab=99.27 E-value=1.8e-10 Score=129.43 Aligned_cols=273 Identities=13% Similarity=0.144 Sum_probs=176.0
Q ss_pred ChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh----CCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCe
Q psy13788 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ----CPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775 (1034)
Q Consensus 700 ~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~----~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~ 775 (1034)
.++-.+.+.++- ...-++|.+.||||||+ ++|- .+.. ..+.++-+..|.|--|..++.++.+.++-.+|-.
T Consensus 267 y~ykdell~av~-e~QVLiI~GeTGSGKTT--QiPQ--yL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e 341 (902)
T KOG0923|consen 267 YPYKDELLKAVK-EHQVLIIVGETGSGKTT--QIPQ--YLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE 341 (902)
T ss_pred hhhHHHHHHHHH-hCcEEEEEcCCCCCccc--cccH--HHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccc
Confidence 345556666664 67789999999999998 4442 2222 2345578888999999888888877665544444
Q ss_pred EEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCC
Q psy13788 776 VVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRN 855 (1034)
Q Consensus 776 v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~ 855 (1034)
|+--. ..+.......-|=++|-++|..-+ .....+.+.+.+||||||.=. -....++..++.+. ...++
T Consensus 342 VGYsI---RFEdcTSekTvlKYMTDGmLlREf---L~epdLasYSViiiDEAHERT----L~TDILfgLvKDIa-r~Rpd 410 (902)
T KOG0923|consen 342 VGYSI---RFEDCTSEKTVLKYMTDGMLLREF---LSEPDLASYSVIIVDEAHERT----LHTDILFGLVKDIA-RFRPD 410 (902)
T ss_pred cceEE---EeccccCcceeeeeecchhHHHHH---hccccccceeEEEeehhhhhh----hhhhHHHHHHHHHH-hhCCc
Confidence 33111 111111124557789999874333 456778999999999999621 22222333333332 34478
Q ss_pred eEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHh---hCCCCCeEE
Q psy13788 856 VRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQ---HSPEKPVMI 932 (1034)
Q Consensus 856 ~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~lV 932 (1034)
.+++..|||+ +++.|..|++-- .+|. -+.|..|+++++..-+..+|.. .++..+.+ -.+.+-+||
T Consensus 411 LKllIsSAT~-DAekFS~fFDda--pIF~--iPGRRyPVdi~Yt~~PEAdYld-------Aai~tVlqIH~tqp~GDILV 478 (902)
T KOG0923|consen 411 LKLLISSATM-DAEKFSAFFDDA--PIFR--IPGRRYPVDIFYTKAPEADYLD-------AAIVTVLQIHLTQPLGDILV 478 (902)
T ss_pred ceEEeecccc-CHHHHHHhccCC--cEEe--ccCcccceeeecccCCchhHHH-------HHHhhheeeEeccCCccEEE
Confidence 9999999999 688999998633 3444 3446666676665544444422 22222222 234567999
Q ss_pred EecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhh
Q psy13788 933 FVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALS 1012 (1034)
Q Consensus 933 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~ 1012 (1034)
|..-.+..+.+...|...+..-+.. +. ..-|..+|+.+|.+.+..|.+ - .-
T Consensus 479 FltGQeEIEt~~e~l~~~~~~LGsk-----------------i~--------eliv~PiYaNLPselQakIFe--P--tP 529 (902)
T KOG0923|consen 479 FLTGQEEIETVKENLKERCRRLGSK-----------------IR--------ELIVLPIYANLPSELQAKIFE--P--TP 529 (902)
T ss_pred EeccHHHHHHHHHHHHHHHHHhccc-----------------cc--------eEEEeeccccCChHHHHhhcC--C--CC
Confidence 9999988777766665544332211 00 012788999999999999977 3 67
Q ss_pred cCCceEEEechhhhhcc
Q psy13788 1013 SKENQNVINRSTSANGN 1029 (1034)
Q Consensus 1013 ~g~i~VLVaT~~l~~Gv 1029 (1034)
.|.-+|++||+.++-.+
T Consensus 530 ~gaRKVVLATNIAETSl 546 (902)
T KOG0923|consen 530 PGARKVVLATNIAETSL 546 (902)
T ss_pred CCceeEEEeecchhhce
Confidence 88999999999987654
No 137
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.25 E-value=1.6e-10 Score=143.25 Aligned_cols=151 Identities=17% Similarity=0.098 Sum_probs=98.0
Q ss_pred CChhHHHHHHHHh---cCCCcEEEEcCCCChhhHHHHHHHHHHHH-hCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 699 FNPIQTQIFHCLY---HTDNNVLLGAPTGSGKTIAAEITCFRVFK-QCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~---~~~~~vll~apTGsGKT~~~~l~il~~l~-~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
++|+|.+.+.-+. ..+.+.|++-..|.|||+.++..+..... ....+.+|||||. +++.||.+++.+.+. ..
T Consensus 170 Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p---~l 245 (1033)
T PLN03142 170 MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP---VL 245 (1033)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC---CC
Confidence 8899999987543 36778999999999999976544432221 2234679999996 677888888875443 36
Q ss_pred eEEEEcCCCCcccc------ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHh
Q psy13788 775 KVVELTGDVTPDIQ------AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFI 848 (1034)
Q Consensus 775 ~v~~~~g~~~~~~~------~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l 848 (1034)
++..++|+...... .....+|+|+|++.+...... ..--..++||+||||.+.+.... ....+..+
T Consensus 246 ~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~----L~k~~W~~VIvDEAHrIKN~~Sk-lskalr~L--- 317 (1033)
T PLN03142 246 RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA----LKRFSWRYIIIDEAHRIKNENSL-LSKTMRLF--- 317 (1033)
T ss_pred ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH----hccCCCCEEEEcCccccCCHHHH-HHHHHHHh---
Confidence 77777875432211 123679999999987432221 11124679999999999863222 22222222
Q ss_pred hhccCCCeEEEEEccCCC
Q psy13788 849 SSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 849 ~~~~~~~~~iv~lSATl~ 866 (1034)
... ..+++|+|+-
T Consensus 318 ----~a~-~RLLLTGTPl 330 (1033)
T PLN03142 318 ----STN-YRLLITGTPL 330 (1033)
T ss_pred ----hcC-cEEEEecCCC
Confidence 122 3578999964
No 138
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=8.2e-10 Score=129.25 Aligned_cols=130 Identities=21% Similarity=0.126 Sum_probs=97.6
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+|+. |++.|.-..-.++ .| -+..+.||.|||+++.+|++..... +..+-+++|+.-||.|-++.+...|.. +|
T Consensus 75 lg~r-~ydvQlig~l~Ll-~G--~VaEM~TGEGKTLvA~l~a~l~AL~--G~~VhvvT~NdyLA~RDae~m~~ly~~-LG 147 (764)
T PRK12326 75 LGLR-PFDVQLLGALRLL-AG--DVIEMATGEGKTLAGAIAAAGYALQ--GRRVHVITVNDYLARRDAEWMGPLYEA-LG 147 (764)
T ss_pred cCCC-cchHHHHHHHHHh-CC--CcccccCCCCHHHHHHHHHHHHHHc--CCCeEEEcCCHHHHHHHHHHHHHHHHh-cC
Confidence 4544 6777777766665 55 3779999999999999998876655 789999999999999988888766665 89
Q ss_pred CeEEEEcCCCCccccc-cCCCcEEEECHhhH-HHHHhc-c---ccccccCcccEEEEeccccc
Q psy13788 774 KKVVELTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRS-W---QNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~-~---~~~~~l~~l~~lViDEaH~l 830 (1034)
++++.++++.+...+. .-.|||+.+|...+ .+.++. . ......+.+.+.|+||+|.+
T Consensus 148 Lsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 148 LTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 9999999887655332 34799999999876 223331 1 11222356889999999965
No 139
>KOG0953|consensus
Probab=99.18 E-value=1.5e-10 Score=128.00 Aligned_cols=231 Identities=18% Similarity=0.205 Sum_probs=146.8
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc-cCCC
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA-ISSA 793 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-~~~~ 793 (1034)
+-++-++||.||||.-+ ++.+.+ ....+|.-|.|-||.++++++.. .|+.+..++|........ -..+
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~--aksGvycGPLrLLA~EV~~r~na-----~gipCdL~TGeE~~~~~~~~~~a 260 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKS--AKSGVYCGPLRLLAHEVYDRLNA-----LGIPCDLLTGEERRFVLDNGNPA 260 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhh--hccceecchHHHHHHHHHHHhhh-----cCCCccccccceeeecCCCCCcc
Confidence 34667899999999854 555555 57889999999999999998875 789999999965433221 2357
Q ss_pred cEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHH
Q psy13788 794 SVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLA 872 (1034)
Q Consensus 794 ~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~ 872 (1034)
..+-||-|++.- -..++..|+||+++|.+ ++|..|...+--+ ....+.+.|=-|.++=.+++.
T Consensus 261 ~hvScTVEM~sv----------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl------~AdEiHLCGepsvldlV~~i~ 324 (700)
T KOG0953|consen 261 QHVSCTVEMVSV----------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGL------AADEIHLCGEPSVLDLVRKIL 324 (700)
T ss_pred cceEEEEEEeec----------CCceEEEEehhHHhhcCcccchHHHHHHHhh------hhhhhhccCCchHHHHHHHHH
Confidence 788889887521 23468899999999988 7887776554222 122333332222221122333
Q ss_pred hHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHh
Q psy13788 873 TWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILA 952 (1034)
Q Consensus 873 ~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~ 952 (1034)
+..| ..+ ....-.|-.|+.+ .+.+...+....++.. |.|-|++..-.+...+.....
T Consensus 325 k~TG---d~v-ev~~YeRl~pL~v-----------------~~~~~~sl~nlk~GDC--vV~FSkk~I~~~k~kIE~~g~ 381 (700)
T KOG0953|consen 325 KMTG---DDV-EVREYERLSPLVV-----------------EETALGSLSNLKPGDC--VVAFSKKDIFTVKKKIEKAGN 381 (700)
T ss_pred hhcC---Cee-EEEeecccCccee-----------------hhhhhhhhccCCCCCe--EEEeehhhHHHHHHHHHHhcC
Confidence 2222 111 0011111111111 1134445555555544 445577777666665544332
Q ss_pred ccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhc--CCceEEEechhhhhccC
Q psy13788 953 CETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSS--KENQNVINRSTSANGNF 1030 (1034)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~--g~i~VLVaT~~l~~Gv~ 1030 (1034)
. .+++++|++|++.|...-. + |.+ ++.+||||||++++|+
T Consensus 382 ~---------------------------------k~aVIYGsLPPeTr~aQA~--~--FNd~~~e~dvlVAsDAIGMGL- 423 (700)
T KOG0953|consen 382 H---------------------------------KCAVIYGSLPPETRLAQAA--L--FNDPSNECDVLVASDAIGMGL- 423 (700)
T ss_pred c---------------------------------ceEEEecCCCCchhHHHHH--H--hCCCCCccceEEeeccccccc-
Confidence 2 2789999999999977766 7 988 8999999999999999
Q ss_pred CCC
Q psy13788 1031 DFN 1033 (1034)
Q Consensus 1031 Dfs 1033 (1034)
.+|
T Consensus 424 NL~ 426 (700)
T KOG0953|consen 424 NLN 426 (700)
T ss_pred ccc
Confidence 765
No 140
>KOG0924|consensus
Probab=99.17 E-value=7.2e-10 Score=124.78 Aligned_cols=273 Identities=13% Similarity=0.163 Sum_probs=170.2
Q ss_pred hhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC---CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC---PEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 701 ~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~---~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
.++.+.+..+- .++-+++.+.||||||+- +| +.+... ..+.+-+..|.|.-|...++++...++-.+|-.|+
T Consensus 359 ~~R~~ll~~ir-~n~vvvivgETGSGKTTQ--l~--QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 359 ACRDQLLSVIR-ENQVVVIVGETGSGKTTQ--LA--QYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHHHHHHh-hCcEEEEEecCCCCchhh--hH--HHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 35666666664 677899999999999983 22 222221 24566677799999998888887766544444433
Q ss_pred EEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeE
Q psy13788 778 ELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVR 857 (1034)
Q Consensus 778 ~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~ 857 (1034)
-..- .+.-......|-+.|-+.|..-. .....+.+.+.||+||||.=. -....++.-++.. .....+.+
T Consensus 434 YsIR---FEdvT~~~T~IkymTDGiLLrEs---L~d~~L~kYSviImDEAHERs----lNtDilfGllk~~-larRrdlK 502 (1042)
T KOG0924|consen 434 YSIR---FEDVTSEDTKIKYMTDGILLRES---LKDRDLDKYSVIIMDEAHERS----LNTDILFGLLKKV-LARRRDLK 502 (1042)
T ss_pred eEEE---eeecCCCceeEEEeccchHHHHH---hhhhhhhheeEEEechhhhcc----cchHHHHHHHHHH-HHhhccce
Confidence 2111 11111124567889998863222 345568889999999999632 1112222222222 12335889
Q ss_pred EEEEccCCCCHHHHHhHhc-ccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhh--CCCCCeEEEe
Q psy13788 858 LVGLSTALANAKDLATWLN-ITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQH--SPEKPVMIFV 934 (1034)
Q Consensus 858 iv~lSATl~~~~~l~~~l~-~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~lVF~ 934 (1034)
+|..|||+ +++.|+.|+| ++ .|.-..|..|+++.+...+..+|.... +-+.+.-+ ...+-.|||.
T Consensus 503 liVtSATm-~a~kf~nfFgn~p-----~f~IpGRTyPV~~~~~k~p~eDYVeaa------vkq~v~Ihl~~~~GdilIfm 570 (1042)
T KOG0924|consen 503 LIVTSATM-DAQKFSNFFGNCP-----QFTIPGRTYPVEIMYTKTPVEDYVEAA------VKQAVQIHLSGPPGDILIFM 570 (1042)
T ss_pred EEEeeccc-cHHHHHHHhCCCc-----eeeecCCccceEEEeccCchHHHHHHH------HhhheEeeccCCCCCEEEec
Confidence 99999999 7899999998 33 234455667777766654444443211 11222211 2446799999
Q ss_pred cChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcC
Q psy13788 935 SSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSK 1014 (1034)
Q Consensus 935 ~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g 1014 (1034)
+-.+..+-++..+...+..-..... -...|..+++.||..-+..+.+ . -..|
T Consensus 571 tGqediE~t~~~i~~~l~ql~~~~~------------------------~~L~vlpiYSQLp~dlQ~kiFq--~--a~~~ 622 (1042)
T KOG0924|consen 571 TGQEDIECTCDIIKEKLEQLDSAPT------------------------TDLAVLPIYSQLPADLQAKIFQ--K--AEGG 622 (1042)
T ss_pred CCCcchhHHHHHHHHHHHhhhcCCC------------------------CceEEEeehhhCchhhhhhhcc--c--CCCC
Confidence 9998888777766655432211100 0113778999999999888855 3 5668
Q ss_pred CceEEEechhhhhcc
Q psy13788 1015 ENQNVINRSTSANGN 1029 (1034)
Q Consensus 1015 ~i~VLVaT~~l~~Gv 1029 (1034)
.-+|+|||++++-.+
T Consensus 623 vRK~IvATNIAETSL 637 (1042)
T KOG0924|consen 623 VRKCIVATNIAETSL 637 (1042)
T ss_pred ceeEEEeccchhhce
Confidence 889999999987654
No 141
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.17 E-value=1.8e-10 Score=141.66 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=36.8
Q ss_pred cccccEEEEeeeecccCCCCchHHHHHHhhhhcc----ccceeecccc
Q psy13788 5 TELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI----GQEVFKGVKS 48 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d~RG~~le~li~~~~~~~----~~~~~~~~~~ 48 (1034)
++++++|||||+|.+.+.+|+.++.++.|+.+.. .++|++++|+
T Consensus 155 l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SA 202 (742)
T TIGR03817 155 LRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASA 202 (742)
T ss_pred HhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 6889999999999997789999999998876543 3478998877
No 142
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=2.4e-09 Score=128.48 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=92.7
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
|.++|.-.--.+ +.| -+..+.||.|||+++.+|++..... +..+-+++|+.-||.|-+..+...|.. +|++++.
T Consensus 83 ~ydVQliGg~~L-h~G--~iaEM~TGEGKTLvA~l~a~l~al~--G~~VhvvT~ndyLA~RD~e~m~~l~~~-lGl~v~~ 156 (913)
T PRK13103 83 HFDVQLIGGMTL-HEG--KIAEMRTGEGKTLVGTLAVYLNALS--GKGVHVVTVNDYLARRDANWMRPLYEF-LGLSVGI 156 (913)
T ss_pred cchhHHHhhhHh-ccC--ccccccCCCCChHHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHHHhcc-cCCEEEE
Confidence 555565433333 344 6889999999999999999866554 789999999999999988887766655 8999999
Q ss_pred EcCCCCccccc-cCCCcEEEECHhhH-HHHHhc-c---ccccccCcccEEEEeccccc
Q psy13788 779 LTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRS-W---QNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 779 ~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~-~---~~~~~l~~l~~lViDEaH~l 830 (1034)
++++.+...+. .-.+||+++|..-+ .+.++. . ......+.+.++||||+|.+
T Consensus 157 i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 157 VTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred ECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 99887655433 34699999999876 222221 0 11223477899999999976
No 143
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.08 E-value=8.1e-10 Score=118.56 Aligned_cols=218 Identities=13% Similarity=0.123 Sum_probs=174.5
Q ss_pred hccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhhhHHHHHHhhhccccCCCCCCCCcchhHHHHHHHHHhC
Q psy13788 350 YYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSR 429 (1034)
Q Consensus 350 ~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l~~~~~~~~~~~~~~~~~~Kv~~LLqa~i~~ 429 (1034)
-.+.+.||..|+..+...++...+|++++.++||.++.- +.+..-...||++|++|
T Consensus 225 ~gvh~vT~~~f~~~~~~SlTlDelLslfasskElt~~~p------------------------k~pk~~~ekll~dhlnr 280 (610)
T COG5407 225 VGVHFVTMEMFYERIDGSLTLDELLSLFASSKELTRMNP------------------------KGPKCTLEKLLGDHLNR 280 (610)
T ss_pred cceeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHhCC------------------------CCCchhHHHHHHHHHhH
Confidence 457889999999999999999999999999999877632 12334455789999999
Q ss_pred CCCCCcChHhhHHHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccCCCC-CcccccccccccCCCCCCCCHH
Q psy13788 430 GRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHE-TPLRQIKLVTNRGYQSPILKPD 508 (1034)
Q Consensus 430 ~~~~~~~l~gd~~~i~~~a~rll~al~ei~~~~~~~~~~~~~l~L~k~l~~~~w~~~-~~L~ql~~~~~~~~~~p~i~~~ 508 (1034)
..-..|+ ...|..++.-+++|+.+|+..++....+...+.+.|+|.|+++-+. .++.|+ |++..+
T Consensus 281 ~~s~~fn----~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQl----------p~~d~E 346 (610)
T COG5407 281 ARSVEFN----EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQL----------PRSDVE 346 (610)
T ss_pred hhcccch----heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcc----------cchhHH
Confidence 8876665 5788999999999999999999999999999999999999999884 589999 999999
Q ss_pred HHHHHHhcCC-CHHHHhcCCHHHHHhhhcC--chhHHHHHHHhhcCCcceEE---------EEEEeeccceEEEEEEE--
Q psy13788 509 ILNKIEQRGL-TVEDLREMPAKEISYMLRD--PHVGDKVKQCAWEIPLLEIE---------SKLLPITRTVLKIHLTI-- 574 (1034)
Q Consensus 509 ~~~~L~~~g~-t~~~l~~~~~~el~~~l~~--~~~g~~i~~~~~~~P~l~~~---------~~~~pit~~~l~v~l~~-- 574 (1034)
.+..+.-+.+ ++.++..+..+..+..+.+ ....+.+.+.+..+|++.+- -.++|-+...+..++.+
T Consensus 347 ~~~~~s~r~I~~~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~~~a~flv~~d~~it~~s~~~vslk~~~g~ 426 (610)
T COG5407 347 YAQRVSLRLIEGMKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFLLQAPFLVFEDLFITEKSKERVSLKGYLGA 426 (610)
T ss_pred HHHHhhhhhhhhhhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEEEecceeecccceecccceeeEEEEEEecc
Confidence 9988887788 8999999999999999874 45778899999999998872 12233332222222110
Q ss_pred -------------------------------------EeCCCCCccCCCCCCCcEEEEEEcCCCCeeE
Q psy13788 575 -------------------------------------KANFSWNDKNKSTYAEPFWIWVEDPDSDFIY 605 (1034)
Q Consensus 575 -------------------------------------~~~~~~~~~~~~~~~e~~~l~v~D~~~~~i~ 605 (1034)
+-+..|++.+.-++...||+.|.++..+.++
T Consensus 427 ~~~pe~~ts~~~~~n~~e~~dfe~~~~~~~ai~~d~~~~pys~Ap~f~t~~~~~w~~~v~~~~Qt~~I 494 (610)
T COG5407 427 IPGPEHRTSALNVYNQVEISDFEASVIETGAIKNDSSDSPYSEAPDFATRNDSEWAVRVAKCEQTVYI 494 (610)
T ss_pred ccCCcccccccccccccChHHHhhhccCccccccCCCCCCcccCcccccccCcceEEEeeccccceEE
Confidence 1125688887777788899999999987666
No 144
>KOG0949|consensus
Probab=99.07 E-value=7.8e-11 Score=137.40 Aligned_cols=91 Identities=21% Similarity=0.260 Sum_probs=65.7
Q ss_pred ccc-eecchhHHHH-HHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhh
Q psy13788 104 HGC-YVHIGILDVL-QIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFG 180 (1034)
Q Consensus 104 ~g~-~~h~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~G 180 (1034)
+|+ +||||+-..+ .+.+--+|. .-|++.|+|.|++. |||||+ +|++-| | --.++++.|+||+|
T Consensus 963 RGiG~HHaglNr~yR~~VEvLFR~----g~L~VlfaT~TLsL-GiNMPCrTVvF~g----D-----sLQL~plny~QmaG 1028 (1330)
T KOG0949|consen 963 RGIGVHHAGLNRKYRSLVEVLFRQ----GHLQVLFATETLSL-GINMPCRTVVFAG----D-----SLQLDPLNYKQMAG 1028 (1330)
T ss_pred hcccccccccchHHHHHHHHHhhc----CceEEEEEeeehhc-ccCCCceeEEEec----c-----ccccCchhHHhhhc
Confidence 899 6688876322 222223333 37889999999995 899999 566432 2 15688999999999
Q ss_pred ccCCCCccccceEEEECCcccHHHHHHHhc
Q psy13788 181 RAGRPQYNTSGHATIITPHEKLNHYLSLLT 210 (1034)
Q Consensus 181 RAGR~~~d~~G~~~i~~~~~~~~~y~~~~~ 210 (1034)
||||+|||+.|.++.|--+- ++..++|+
T Consensus 1029 RAGRRGFD~lGnV~FmgiP~--~kv~rLlt 1056 (1330)
T KOG0949|consen 1029 RAGRRGFDTLGNVVFMGIPR--QKVQRLLT 1056 (1330)
T ss_pred cccccccccccceEEEeCcH--HHHHHHHH
Confidence 99999999999999997763 24444444
No 145
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.06 E-value=2.4e-08 Score=122.48 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=52.2
Q ss_pred CChhHHHHHHHHh---cC-----CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHH
Q psy13788 699 FNPIQTQIFHCLY---HT-----DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVAD 763 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~---~~-----~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~ 763 (1034)
+|+-|.+....+. .. ++.+++.||||+|||++|++|++..... .+.++||-+.|++|-+|.+.+
T Consensus 26 ~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~-~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 26 PRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA-EKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred cCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH-cCCeEEEEcCCHHHHHHHHhh
Confidence 8999999766553 34 3678999999999999999998765443 478999999999999998643
No 146
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.04 E-value=1.6e-08 Score=121.94 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=64.2
Q ss_pred HHHHHHHhh-CCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCC
Q psy13788 916 PIYTAIKQH-SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAA 994 (1034)
Q Consensus 916 ~~~~~l~~~-~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~ 994 (1034)
.+.+.+... ..+.+++|||+|++.++.++..|.+.. ..+.++||+
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g----------------------------------i~~~~lh~~ 475 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG----------------------------------IKVRYLHSE 475 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc----------------------------------cceeeeeCC
Confidence 344444433 457789999999999999888776531 126789999
Q ss_pred CCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 995 AEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 995 ~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++..+|..+++ . |++|+++|||||+.+++|+ |+-
T Consensus 476 ~~~~eR~~~l~--~--fr~G~i~VLV~t~~L~rGf-DiP 509 (655)
T TIGR00631 476 IDTLERVEIIR--D--LRLGEFDVLVGINLLREGL-DLP 509 (655)
T ss_pred CCHHHHHHHHH--H--HhcCCceEEEEcChhcCCe-eeC
Confidence 99999988877 6 9999999999999999999 984
No 147
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.02 E-value=5.8e-09 Score=126.18 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=95.5
Q ss_pred ChhHHHHHHHHhc-------CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 700 NPIQTQIFHCLYH-------TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 700 ~~~Q~~ai~~l~~-------~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
..+|-+|+..+.. .|-=++--|.||+|||++=.-.+...-...++.|..|..-.|.|--|+-..+++.++= .
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L-~ 488 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNL-S 488 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCC-C
Confidence 3589999987642 1112555699999999976655544433345668999999999988887777766541 1
Q ss_pred CCeEEEEcC-------------------------------------------CCCcc-----------ccccCCCcEEEE
Q psy13788 773 KKKVVELTG-------------------------------------------DVTPD-----------IQAISSASVIVT 798 (1034)
Q Consensus 773 ~~~v~~~~g-------------------------------------------~~~~~-----------~~~~~~~~IiV~ 798 (1034)
.-..+++.| ..... ....-.++++||
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEe
Confidence 111222222 11000 000114789999
Q ss_pred CHhhHHHHHhccc-cccccCc----ccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 799 TPEKWDGVSRSWQ-NRNYVQS----VALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 799 Tpe~l~~l~~~~~-~~~~l~~----l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
|++++.......+ ....+.. -+.|||||+|.+... ...++.++-.+... -..+++++|||+|.
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~----~~~~L~rlL~w~~~--lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE----DLPALLRLVQLAGL--LGSRVLLSSATLPP 636 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH----HHHHHHHHHHHHHH--cCCCEEEEeCCCCH
Confidence 9999865542211 1222222 246999999998742 22333333222222 35679999999997
No 148
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.99 E-value=3.9e-09 Score=125.11 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=53.0
Q ss_pred HHHHHHHH---hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy13788 703 QTQIFHCL---YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKV 766 (1034)
Q Consensus 703 Q~~ai~~l---~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~ 766 (1034)
|.+.+..+ +.+++.+++.||||+|||++|++|++..+...++.++||++||++|++|+++++..
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~ 68 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELER 68 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHH
Confidence 55544433 34678899999999999999999999877655578999999999999999998764
No 149
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.99 E-value=6.8e-09 Score=130.94 Aligned_cols=161 Identities=19% Similarity=0.241 Sum_probs=102.9
Q ss_pred cCcccce-EEEe-cC---ceeecCCCCee----eecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHhcCCcc
Q psy13788 144 NDIELFT-EHMT-KG---TEMYNAKHGCY----VHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214 (1034)
Q Consensus 144 ~gvn~pa-~vii-~~---~~~~~~~~~~~----~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~~~~~ 214 (1034)
-|+.+|- ++|| .| ..+||+..|-. .++|...+.|+.|||||.| .|.+|-+.+.+. |..+-..+.|
T Consensus 342 tSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~---~~~~~~~~~P 415 (1283)
T TIGR01967 342 TSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEED---FNSRPEFTDP 415 (1283)
T ss_pred hccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHH---HHhhhhccCc
Confidence 3788886 4444 33 25688776531 4577889999999999997 899998887653 3332211222
Q ss_pred eecccccchHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccc
Q psy13788 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPRE 294 (1034)
Q Consensus 215 i~s~l~~~~~~~ln~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~ 294 (1034)
|| +| ..+...+|.+.++|. .++. .|-+.
T Consensus 416 ---------------EI-----------lR---------~~L~~viL~l~~lg~-~di~--------~f~fl-------- 443 (1283)
T TIGR01967 416 ---------------EI-----------LR---------TNLASVILQMLALRL-GDIA--------AFPFI-------- 443 (1283)
T ss_pred ---------------cc-----------cc---------ccHHHHHHHHHhcCC-CCcc--------cccCC--------
Confidence 33 11 223345566656553 2221 12222
Q ss_pred cCCCccccCCChhHHHHHHHHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHH
Q psy13788 295 YGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGIL 374 (1034)
Q Consensus 295 y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL 374 (1034)
++ |. ...+..+++.|.+.|.|..+ ++...+|++|+.+|.+.++|.-++.+.....-.. ...++
T Consensus 444 ---dp------P~-----~~~i~~A~~~L~~LGAld~~--~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gc-l~e~l 506 (1283)
T TIGR01967 444 ---EA------PD-----PRAIRDGFRLLEELGALDDD--EAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGC-LQEVL 506 (1283)
T ss_pred ---CC------CC-----HHHHHHHHHHHHHCCCCCCC--CCCccccHHHHHHhhcCCChHHHHHHHHhhhcCC-HHHHH
Confidence 11 11 35688999999999999643 3347899999999999999999999988755443 23455
Q ss_pred Hhhcc
Q psy13788 375 SMISQ 379 (1034)
Q Consensus 375 ~ll~~ 379 (1034)
.+.|.
T Consensus 507 ~IaA~ 511 (1283)
T TIGR01967 507 IIASA 511 (1283)
T ss_pred HHHHH
Confidence 44443
No 150
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.97 E-value=1.2e-08 Score=112.97 Aligned_cols=66 Identities=23% Similarity=0.162 Sum_probs=52.9
Q ss_pred CChhHHHHHHHHhc----CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 699 FNPIQTQIFHCLYH----TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~----~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
|..-|-+||..+.+ +.+.-.+-+.||||||++..--|-+. +..+||++|.+.||.|.+.+++..|.
T Consensus 13 PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~-----~rPtLV~AhNKTLAaQLy~Efk~fFP 82 (663)
T COG0556 13 PAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKV-----QRPTLVLAHNKTLAAQLYSEFKEFFP 82 (663)
T ss_pred CCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHh-----CCCeEEEecchhHHHHHHHHHHHhCc
Confidence 77789999877652 33568888999999998654444333 67899999999999999999998885
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=9.4e-08 Score=118.31 Aligned_cols=75 Identities=16% Similarity=0.311 Sum_probs=63.1
Q ss_pred cccccCCCChhHHHHHHHHh---cCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHH
Q psy13788 692 SLYKFSHFNPIQTQIFHCLY---HTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLKALVKERVADWKV 766 (1034)
Q Consensus 692 ~~~~~~~~~~~Q~~ai~~l~---~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~~L~~q~~~~~~~ 766 (1034)
..|+|..++|.|.+....++ ..++++++.||||+|||++.+.|++...... ...+++|.+.|.+=..|..+++++
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 46889988999999886653 4788999999999999999999999876543 247999999999988898888875
No 152
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.93 E-value=2.1e-08 Score=94.31 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHH-HHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccC
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFR-VFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~-~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 791 (1034)
.|+-.++...+|+|||.-.+--+++ .+.+ +.++|++.|||.++.+..+.++. .+ +..-+.-... ....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~-----~~--~~~~t~~~~~--~~~g 71 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKG-----LP--VRFHTNARMR--THFG 71 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTT-----SS--EEEESTTSS------S
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhc-----CC--cccCceeeec--cccC
Confidence 4556789999999999855444443 4443 89999999999999987775542 22 2222221111 2234
Q ss_pred CCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 792 ~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
+.-|-++|...+...+.+ .....+.+++|+||||.... ..+ .....++... .....++|++|||+|.
T Consensus 72 ~~~i~vMc~at~~~~~~~---p~~~~~yd~II~DEcH~~Dp---~sI-A~rg~l~~~~--~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 72 SSIIDVMCHATYGHFLLN---PCRLKNYDVIIMDECHFTDP---TSI-AARGYLRELA--ESGEAKVIFMTATPPG 138 (148)
T ss_dssp SSSEEEEEHHHHHHHHHT---SSCTTS-SEEEECTTT--SH---HHH-HHHHHHHHHH--HTTS-EEEEEESS-TT
T ss_pred CCcccccccHHHHHHhcC---cccccCccEEEEeccccCCH---HHH-hhheeHHHhh--hccCeeEEEEeCCCCC
Confidence 667889999988655543 44468899999999999653 111 2222333221 2234689999999986
No 153
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.90 E-value=3.9e-08 Score=117.79 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=91.6
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
.|+. |++.|.-..-.+ .+.-+..+.||.|||+++.+|+.-... .+..|-||+++..||.+-++.+...+. .+|
T Consensus 73 lG~r-~ydvQlig~l~L---~~G~IaEm~TGEGKTL~a~l~ayl~aL--~G~~VhVvT~NdyLA~RD~e~m~pvy~-~LG 145 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVL---NDGKIAEMKTGEGKTLVATLPAYLNAL--TGKGVHIVTVNDYLAKRDQEWMGQIYR-FLG 145 (870)
T ss_pred hCCC-CCchHhhhhHhh---cCCccccccCCCCchHHHHHHHHHHHh--cCCceEEEeCCHHHHHHHHHHHHHHHH-HcC
Confidence 4433 556665543333 245789999999999999999863333 378899999999999987776665554 499
Q ss_pred CeEEEEcCCCCccccc-cCCCcEEEECHhhH-HHHHhc-c---ccccccCcccEEEEeccccc
Q psy13788 774 KKVVELTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRS-W---QNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~-~---~~~~~l~~l~~lViDEaH~l 830 (1034)
+.++...++.+...+. .-.+||+.+|...+ .+.+|. . ......+.+.+.|+||+|.+
T Consensus 146 Lsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 146 LTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred CceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 9999988877655433 34789999999766 233331 1 11123466889999999965
No 154
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.89 E-value=4.5e-08 Score=118.16 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=82.0
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
|.++|.-.--.+ +.| -+..+.||=|||+++.+|++-.... |..+-+|...--||..=.+ |...+-..+|++|++
T Consensus 139 ~ydVQLiGgivL-h~G--~IAEM~TGEGKTLvatlp~yLnAL~--G~gVHvVTvNDYLA~RDae-wm~p~y~flGLtVg~ 212 (1025)
T PRK12900 139 PYDVQLIGGIVL-HSG--KISEMATGEGKTLVSTLPTFLNALT--GRGVHVVTVNDYLAQRDKE-WMNPVFEFHGLSVGV 212 (1025)
T ss_pred ccchHHhhhHHh-hcC--CccccCCCCCcchHhHHHHHHHHHc--CCCcEEEeechHhhhhhHH-HHHHHHHHhCCeeee
Confidence 445555433333 455 5789999999999999998755555 4555566666667764333 444444558999998
Q ss_pred EcCCCCccccc-cCCCcEEEECHhhH-HHHHhc-c---ccccccCcccEEEEeccccc
Q psy13788 779 LTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRS-W---QNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 779 ~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~-~---~~~~~l~~l~~lViDEaH~l 830 (1034)
+..+.....+. .-.|||+++|..-| .+.+|. . ......+...+.||||+|.+
T Consensus 213 i~~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSv 270 (1025)
T PRK12900 213 ILNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSV 270 (1025)
T ss_pred eCCCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhh
Confidence 87765554433 45899999999876 223321 1 11122366789999999965
No 155
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.89 E-value=2.3e-08 Score=125.72 Aligned_cols=186 Identities=18% Similarity=0.237 Sum_probs=112.2
Q ss_pred ccccchhhhccCcccce-EEEe-cC---ceeecCCCCe----eeecChhhHHHHhhccCCCCccccceEEEECCcccHHH
Q psy13788 134 RTASNYYIKHNDIELFT-EHMT-KG---TEMYNAKHGC----YVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNH 204 (1034)
Q Consensus 134 ~~~~~~~~~~~gvn~pa-~vii-~~---~~~~~~~~~~----~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~ 204 (1034)
..++|-..+ -||.+|- +.|| .| ..+||+..|. ..++|...|.|+.|||||. ..|.+|-+.+.+ .
T Consensus 340 IIVATNIAE-tSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~---d 412 (1294)
T PRK11131 340 IVLATNVAE-TSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSED---D 412 (1294)
T ss_pred EEEeccHHh-hccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHH---H
Confidence 333443333 3788886 4444 34 3678887652 2457778999999999998 479999888765 3
Q ss_pred HHHHhcCCcceecccccchHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccc
Q psy13788 205 YLSLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYL 284 (1034)
Q Consensus 205 y~~~~~~~~~i~s~l~~~~~~~ln~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~ 284 (1034)
|..+-..+. .|| +| ..+...||.+.++|. .++ . .|-
T Consensus 413 ~~~~~~~~~---------------PEI-----------lR---------~~L~~viL~lk~lgl-~di---~-----~F~ 448 (1294)
T PRK11131 413 FLSRPEFTD---------------PEI-----------LR---------TNLASVILQMTALGL-GDI---A-----AFP 448 (1294)
T ss_pred HHhhhcccC---------------Ccc-----------cc---------CCHHHHHHHHHHcCC-CCc---c-----eee
Confidence 444211112 233 11 223344555555553 122 1 122
Q ss_pred eeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhc
Q psy13788 285 HVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHM 364 (1034)
Q Consensus 285 ~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l 364 (1034)
|. ++ |. .+.|.++++.|.+.|.|..+..++...+|++|+.+|.+.++|.-++.+....
T Consensus 449 fl-----------dp------P~-----~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~ 506 (1294)
T PRK11131 449 FV-----------EA------PD-----KRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQ 506 (1294)
T ss_pred CC-----------CC------CC-----HHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhh
Confidence 22 11 11 2568899999999999975533345789999999999999999999999876
Q ss_pred CCCCCHHHHHHhhccccccccCcCChhhhH
Q psy13788 365 TKVLDDVGILSMISQAHEFEQLKVRDEELH 394 (1034)
Q Consensus 365 ~~~~~~~~lL~ll~~s~EF~~i~~r~~E~~ 394 (1034)
.-.+. .+++-+.|... ..+...++.++.
T Consensus 507 ~~~c~-~evl~IaA~Ls-v~dpf~~p~~~~ 534 (1294)
T PRK11131 507 KHGCV-REVMIITSALS-IQDPRERPMDKQ 534 (1294)
T ss_pred hcCCH-HHHHHHHHHHc-CCCcccCCchhH
Confidence 54432 34444443322 233344444443
No 156
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.89 E-value=3.3e-08 Score=122.33 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=58.4
Q ss_pred cccCCCChhHHHHHHHH---hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy13788 694 YKFSHFNPIQTQIFHCL---YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKV 766 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l---~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~ 766 (1034)
|+..++++.|.+++..+ +.+++.+++.||||+|||++|++|++..... .+.+++|.++|+.|.+|.+++...
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~-~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE-EGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH-cCCcEEEECCCHHHHHHHHHhhcc
Confidence 44445999999988654 3466679999999999999999999977554 358999999999999998766543
No 157
>PTZ00424 helicase 45; Provisional
Probab=98.87 E-value=3.8e-09 Score=122.97 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=45.2
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
.+...++|..++ .|||+|. .+|| .|| .+.++.+|.||+|||||.|. .|.+++++.+++.+.+..
T Consensus 317 ~~~vLvaT~~l~-~GiDip~v~~VI----~~~------~p~s~~~y~qr~GRagR~g~--~G~~i~l~~~~~~~~~~~ 381 (401)
T PTZ00424 317 STRVLITTDLLA-RGIDVQQVSLVI----NYD------LPASPENYIHRIGRSGRFGR--KGVAINFVTPDDIEQLKE 381 (401)
T ss_pred CCCEEEEccccc-CCcCcccCCEEE----EEC------CCCCHHHEeecccccccCCC--CceEEEEEcHHHHHHHHH
Confidence 334555555555 3899997 4444 254 34677999999999999875 699999998876555444
No 158
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.87 E-value=6.4e-09 Score=124.06 Aligned_cols=64 Identities=16% Similarity=0.301 Sum_probs=44.6
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
.+...++|..++ .|||+|. +.|| .|| -+.++.+|.||+|||||.|- .|.++++...++...+..
T Consensus 418 ~~~ILVaTdvl~-rGiDip~v~~VI----~~d------~P~s~~~yihRiGRaGR~g~--~G~ai~f~~~~~~~~~~~ 482 (518)
T PLN00206 418 EVPVIVATGVLG-RGVDLLRVRQVI----IFD------MPNTIKEYIHQIGRASRMGE--KGTAIVFVNEEDRNLFPE 482 (518)
T ss_pred CCCEEEEecHhh-ccCCcccCCEEE----EeC------CCCCHHHHHHhccccccCCC--CeEEEEEEchhHHHHHHH
Confidence 334555555555 3899996 4444 255 34567999999999999984 799999998765444433
No 159
>KOG0926|consensus
Probab=98.87 E-value=4e-08 Score=113.04 Aligned_cols=224 Identities=17% Similarity=0.217 Sum_probs=136.2
Q ss_pred HHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHH---Hh--C-CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEc
Q psy13788 707 FHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVF---KQ--C-PEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELT 780 (1034)
Q Consensus 707 i~~l~~~~~~vll~apTGsGKT~~~~l~il~~l---~~--~-~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~ 780 (1034)
.++| +.+.-++||+.||||||+ ++|-+-.- .. . .++-+=|.-|.|--|-.++.+....++. ++..|.-..
T Consensus 265 MEaI-n~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYqI 340 (1172)
T KOG0926|consen 265 MEAI-NENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQI 340 (1172)
T ss_pred HHHh-hcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEEE
Confidence 3444 366779999999999998 34432111 11 1 1345667789998887777777766655 444443211
Q ss_pred CCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCC------
Q psy13788 781 GDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKR------ 854 (1034)
Q Consensus 781 g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~------ 854 (1034)
..+........|-++|-+.|..-+ .....+...+.||+||||.=. -....+-.+++|+-.+++....
T Consensus 341 ---Rfd~ti~e~T~IkFMTDGVLLrEi---~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~~k 413 (1172)
T KOG0926|consen 341 ---RFDGTIGEDTSIKFMTDGVLLREI---ENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQIK 413 (1172)
T ss_pred ---EeccccCCCceeEEecchHHHHHH---HHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 111111235789999999874433 356667889999999999633 1234455566666555444443
Q ss_pred CeEEEEEccCCCCHHHHHhH---hcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHH---HHhhCCCC
Q psy13788 855 NVRLVGLSTALANAKDLATW---LNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTA---IKQHSPEK 928 (1034)
Q Consensus 855 ~~~iv~lSATl~~~~~l~~~---l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~ 928 (1034)
+.++|.||||+. ..||.+- +.+.++ +. .-..|..|..+|+..-...+|... +|.. |.+..+.+
T Consensus 414 pLKLIIMSATLR-VsDFtenk~LFpi~pP-li--kVdARQfPVsIHF~krT~~DYi~e-------AfrKtc~IH~kLP~G 482 (1172)
T KOG0926|consen 414 PLKLIIMSATLR-VSDFTENKRLFPIPPP-LI--KVDARQFPVSIHFNKRTPDDYIAE-------AFRKTCKIHKKLPPG 482 (1172)
T ss_pred ceeEEEEeeeEE-ecccccCceecCCCCc-ee--eeecccCceEEEeccCCCchHHHH-------HHHHHHHHhhcCCCC
Confidence 789999999983 3444421 112211 11 123355667777665443344322 2222 22334566
Q ss_pred CeEEEecChHHHHHHHHHHHHHHh
Q psy13788 929 PVMIFVSSRRQTRLTAIDLITILA 952 (1034)
Q Consensus 929 ~~lVF~~s~~~~~~~a~~L~~~~~ 952 (1034)
.+|||+.-..++..+++.|.+..+
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p 506 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFP 506 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCc
Confidence 899999999999999999988744
No 160
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.85 E-value=1.8e-07 Score=113.90 Aligned_cols=79 Identities=11% Similarity=0.162 Sum_probs=64.1
Q ss_pred HHHHHHHhh-CCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCC
Q psy13788 916 PIYTAIKQH-SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAA 994 (1034)
Q Consensus 916 ~~~~~l~~~-~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~ 994 (1034)
.+.+.+... ..+.+++|||+|++.|+.++..|... +..+.++||+
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~----------------------------------gi~~~~~h~~ 479 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL----------------------------------GIKVRYLHSD 479 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc----------------------------------ceeEEEEECC
Confidence 344444433 35678999999999999888877542 1237889999
Q ss_pred CCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 995 AEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 995 ~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++..+|..+++ . |++|++.|+|||+.+++|+ |+-
T Consensus 480 ~~~~~R~~~l~--~--f~~g~i~vlV~t~~L~rGf-dlp 513 (652)
T PRK05298 480 IDTLERVEIIR--D--LRLGEFDVLVGINLLREGL-DIP 513 (652)
T ss_pred CCHHHHHHHHH--H--HHcCCceEEEEeCHHhCCc-ccc
Confidence 99999998877 6 9999999999999999999 984
No 161
>COG4889 Predicted helicase [General function prediction only]
Probab=98.85 E-value=3.1e-09 Score=122.58 Aligned_cols=125 Identities=17% Similarity=0.268 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHHhc---CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 698 HFNPIQTQIFHCLYH---TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~---~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
.|+|+|++|+.+... .+...=+.+.+|+|||+..+-..-.. . ..++|+++|+.+|..|+.+.|... +.+.+
T Consensus 161 k~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEal-a---~~~iL~LvPSIsLLsQTlrew~~~--~~l~~ 234 (1518)
T COG4889 161 KPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEAL-A---AARILFLVPSISLLSQTLREWTAQ--KELDF 234 (1518)
T ss_pred CCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHH-h---hhheEeecchHHHHHHHHHHHhhc--cCccc
Confidence 499999999988752 34456677889999999876544333 2 379999999999999999999752 22455
Q ss_pred eEEEEcCCCCcccc----------------------------ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEec
Q psy13788 775 KVVELTGDVTPDIQ----------------------------AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDE 826 (1034)
Q Consensus 775 ~v~~~~g~~~~~~~----------------------------~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDE 826 (1034)
+...++++...... ...+--|+++|.+.+...-. ....-+..+++||+||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~e--AQe~G~~~fDliicDE 312 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKE--AQEAGLDEFDLIICDE 312 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHH--HHHcCCCCccEEEecc
Confidence 55555554322110 11245689999988865554 3455678899999999
Q ss_pred cccc
Q psy13788 827 IHLL 830 (1034)
Q Consensus 827 aH~l 830 (1034)
||+-
T Consensus 313 AHRT 316 (1518)
T COG4889 313 AHRT 316 (1518)
T ss_pred hhcc
Confidence 9975
No 162
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.83 E-value=2.1e-08 Score=121.78 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=50.8
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHh
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLL 209 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~ 209 (1034)
.+...++|..+++ |||+|. ++|| .|| .+.++.+|.||+|||||.|. .|+++++....+...+..++
T Consensus 286 ~~~VLVaT~a~~~-GIDip~V~~VI----~~d------~P~s~~~y~Qr~GRaGR~G~--~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 286 DLQIVVATVAFGM-GINKPNVRFVV----HFD------IPRNIESYYQETGRAGRDGL--PAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCCEEEEechhhc-cCCCCCcCEEE----EeC------CCCCHHHHHHHhhhccCCCC--CceEEEEeCHHHHHHHHHHH
Confidence 4456666666664 899997 5555 365 34577999999999999996 58899999887766676666
Q ss_pred cC
Q psy13788 210 TN 211 (1034)
Q Consensus 210 ~~ 211 (1034)
.+
T Consensus 353 ~~ 354 (607)
T PRK11057 353 EE 354 (607)
T ss_pred hc
Confidence 43
No 163
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.81 E-value=3.1e-08 Score=117.02 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=48.7
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHh
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLL 209 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~ 209 (1034)
.+...++|..+++ |||+|. ++|| .|+ .+-++.+|.||+|||||.|. .|.++++....+......++
T Consensus 276 ~~~vLVaT~~~~~-GID~p~V~~VI----~~~------~P~s~~~y~Qr~GRaGR~G~--~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 276 EIQVVVATVAFGM-GINKPDVRFVI----HYS------LPKSMESYYQESGRAGRDGL--PSECHLFYAPADINRLRRLL 342 (470)
T ss_pred CCcEEEEechhhc-cCCcccceEEE----EeC------CCCCHHHHHhhhcCcCCCCC--CceEEEEechhHHHHHHHHH
Confidence 4456666666664 899997 5554 244 34467899999999999886 68899998887666666655
Q ss_pred c
Q psy13788 210 T 210 (1034)
Q Consensus 210 ~ 210 (1034)
.
T Consensus 343 ~ 343 (470)
T TIGR00614 343 M 343 (470)
T ss_pred h
Confidence 3
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.81 E-value=3.7e-08 Score=109.74 Aligned_cols=163 Identities=19% Similarity=0.190 Sum_probs=94.9
Q ss_pred hHHHHHHHHh------------cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCC---CeEEEEcCcHHHHHHHHHHHHH
Q psy13788 702 IQTQIFHCLY------------HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPE---AKVVYIAPLKALVKERVADWKV 766 (1034)
Q Consensus 702 ~Q~~ai~~l~------------~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~---~~~lvi~Pt~~L~~q~~~~~~~ 766 (1034)
+|.+++.-++ ...+.++++-.+|+|||+.++..+.......+. ..+|||+|. ++..|+..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 4777765442 234579999999999999887766544333322 259999999 888999998887
Q ss_pred HhhhhcCCeEEEEcCCC---CccccccCCCcEEEECHhhHHHHHhcc-ccccccCcccEEEEecccccCCCChhHHHHHH
Q psy13788 767 KFEARLKKKVVELTGDV---TPDIQAISSASVIVTTPEKWDGVSRSW-QNRNYVQSVALIIIDEIHLLGEDRGPVLEVIV 842 (1034)
Q Consensus 767 ~~~~~~~~~v~~~~g~~---~~~~~~~~~~~IiV~Tpe~l~~l~~~~-~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il 842 (1034)
.+.. ...++..+.|.. ..........+++|+|.+.+....... .....-.+.++||+||+|.+.+.....+..+.
T Consensus 80 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~ 158 (299)
T PF00176_consen 80 WFDP-DSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALR 158 (299)
T ss_dssp HSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHH
T ss_pred cccc-ccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccccc
Confidence 6643 246788777765 111122457899999999987111100 00111134789999999999653333333322
Q ss_pred HHHHHhhhccCCCeEEEEEccCCCC--HHHHHhHh
Q psy13788 843 SRVNFISSYTKRNVRLVGLSTALAN--AKDLATWL 875 (1034)
Q Consensus 843 ~rl~~l~~~~~~~~~iv~lSATl~~--~~~l~~~l 875 (1034)
. .. ....+++|||+-. ..++...+
T Consensus 159 -------~-l~-~~~~~lLSgTP~~n~~~dl~~~l 184 (299)
T PF00176_consen 159 -------K-LR-ARYRWLLSGTPIQNSLEDLYSLL 184 (299)
T ss_dssp -------C-CC-ECEEEEE-SS-SSSGSHHHHHHH
T ss_pred -------c-cc-cceEEeeccccccccccccccch
Confidence 1 22 5567889999554 34544433
No 165
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=2.5e-07 Score=110.69 Aligned_cols=126 Identities=16% Similarity=0.106 Sum_probs=89.9
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
|.++|.-.--.+ +.| -+..+.||-|||+++.+|+.-.... +..+-||+++.-||..=++.+...+ +.+|++|+.
T Consensus 86 ~ydVQliGgl~L-h~G--~IAEM~TGEGKTL~atlpaylnAL~--GkgVhVVTvNdYLA~RDae~m~~vy-~~LGLtvg~ 159 (939)
T PRK12902 86 HFDVQLIGGMVL-HEG--QIAEMKTGEGKTLVATLPSYLNALT--GKGVHVVTVNDYLARRDAEWMGQVH-RFLGLSVGL 159 (939)
T ss_pred cchhHHHhhhhh-cCC--ceeeecCCCChhHHHHHHHHHHhhc--CCCeEEEeCCHHHHHhHHHHHHHHH-HHhCCeEEE
Confidence 555555543333 344 6899999999999999998755444 7889999999999998666555444 448999999
Q ss_pred EcCCCCccccc-cCCCcEEEECHhhH-HHHHhc-c---ccccccCcccEEEEeccccc
Q psy13788 779 LTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRS-W---QNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 779 ~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~-~---~~~~~l~~l~~lViDEaH~l 830 (1034)
..++.+...+. .-.|||+++|+..+ .+.++. . ......+.+.+.||||+|.+
T Consensus 160 i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 160 IQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred ECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 98876655433 44899999999887 222221 1 12233477889999999976
No 166
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.75 E-value=1.3e-07 Score=116.71 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=92.7
Q ss_pred Ccccce--EEEecCc---eeecCCCCe----eeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHhcCCcc-
Q psy13788 145 DIELFT--EHMTKGT---EMYNAKHGC----YVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP- 214 (1034)
Q Consensus 145 gvn~pa--~vii~~~---~~~~~~~~~----~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~~~~~- 214 (1034)
||++|- -||-.|. ..||+..|- ..++|...+.|+.|||||. ..|.+|-+.+.+. |..+-..+.|
T Consensus 275 gItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~---~~~l~~~~~PE 348 (819)
T TIGR01970 275 SLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ---HQRLPAQDEPE 348 (819)
T ss_pred cccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH---HHhhhcCCCcc
Confidence 788885 4555554 358877652 3579999999999999997 5899999987753 3332222233
Q ss_pred -eecccccchHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCcc
Q psy13788 215 -IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPR 293 (1034)
Q Consensus 215 -i~s~l~~~~~~~ln~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~ 293 (1034)
..+.| ...+|.+.+.|. .++.+ ..|+ ..
T Consensus 349 I~r~~L-------------------------------------~~~~L~l~~~g~-~~~~~-~~~l----------~~-- 377 (819)
T TIGR01970 349 ILQADL-------------------------------------SGLALELAQWGA-KDPSD-LRWL----------DA-- 377 (819)
T ss_pred eeccCc-------------------------------------HHHHHHHHHcCC-CChhh-CCCC----------CC--
Confidence 22222 234454545553 22221 1222 11
Q ss_pred ccCCCccccCCChhHHHHHHHHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhc
Q psy13788 294 EYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHM 364 (1034)
Q Consensus 294 ~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l 364 (1034)
|. ...+..|++.|...|.|..+ + .+|++|+.++.+-++|.-+..+....
T Consensus 378 ------------P~-----~~~i~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~~ 426 (819)
T TIGR01970 378 ------------PP-----SVALAAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSAH 426 (819)
T ss_pred ------------cC-----HHHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHhh
Confidence 11 13578899999999999432 3 58999999999999999999888753
No 167
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.74 E-value=2.2e-07 Score=114.99 Aligned_cols=153 Identities=16% Similarity=0.209 Sum_probs=97.7
Q ss_pred cccccchhhhccCcccce--EEEecCc---eeecCCCCe----eeecChhhHHHHhhccCCCCccccceEEEECCcccHH
Q psy13788 133 GRTASNYYIKHNDIELFT--EHMTKGT---EMYNAKHGC----YVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLN 203 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa--~vii~~~---~~~~~~~~~----~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~ 203 (1034)
+..++|-..+ -||.+|- -||-.|. ..||+..|- -.++|...+.|+.|||||. ..|.+|-+.+.+
T Consensus 267 kVlvATnIAE-rsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~--- 339 (812)
T PRK11664 267 KVVLATNIAE-TSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKE--- 339 (812)
T ss_pred EEEEecchHH-hcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHH---
Confidence 3344443333 3788884 4555554 358888763 2468899999999999997 489999998875
Q ss_pred HHHHHhcCCcceecccccchHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhcccc
Q psy13788 204 HYLSLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSY 283 (1034)
Q Consensus 204 ~y~~~~~~~~~i~s~l~~~~~~~ln~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~ 283 (1034)
.|..+...+.| || +| ..+...+|.+.+.|. .++.+ ..|+
T Consensus 340 ~~~~l~~~~~P---------------EI-----------~r---------~dL~~~~L~l~~~g~-~~~~~-~~~l---- 378 (812)
T PRK11664 340 QAERAAAQSEP---------------EI-----------LH---------SDLSGLLLELLQWGC-HDPAQ-LSWL---- 378 (812)
T ss_pred HHhhCccCCCC---------------ce-----------ec---------cchHHHHHHHHHcCC-CCHHh-CCCC----
Confidence 34443333333 22 00 122344555556654 33322 1222
Q ss_pred ceeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHh
Q psy13788 284 LHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEH 363 (1034)
Q Consensus 284 ~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~ 363 (1034)
.. |. ...++.|++.|...|.|.. .-.+|++|+.++.+-++|.-+..+...
T Consensus 379 ------d~--------------P~-----~~~~~~A~~~L~~lgald~-----~g~lT~~G~~m~~lp~~Prla~~ll~a 428 (812)
T PRK11664 379 ------DQ--------------PP-----AAALAAAKRLLQQLGALDG-----QGRLTARGRKMAALGNDPRLAAMLVAA 428 (812)
T ss_pred ------CC--------------CC-----HHHHHHHHHHHHHCCCCCC-----CCCcCHHHHHHHhcCCchHHHHHHHHH
Confidence 11 11 2457899999999999942 236899999999999999998888765
No 168
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=5.9e-07 Score=107.20 Aligned_cols=130 Identities=13% Similarity=0.094 Sum_probs=88.6
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+|.. |++.|.-.--. ++.| -+..+.||=|||+++.+|+.-.... |..|-|+...--||..=...+...+ ..+|
T Consensus 75 lG~r-~ydVQliGglv-Lh~G--~IAEMkTGEGKTLvAtLpayLnAL~--GkgVhVVTvNdYLA~RDae~mg~vy-~fLG 147 (925)
T PRK12903 75 LGKR-PYDVQIIGGII-LDLG--SVAEMKTGEGKTITSIAPVYLNALT--GKGVIVSTVNEYLAERDAEEMGKVF-NFLG 147 (925)
T ss_pred hCCC-cCchHHHHHHH-HhcC--CeeeecCCCCccHHHHHHHHHHHhc--CCceEEEecchhhhhhhHHHHHHHH-HHhC
Confidence 3433 56666664443 3455 4799999999999999998654443 6777788888888876555444444 4589
Q ss_pred CeEEEEcCCCCcccc-ccCCCcEEEECHhhH-HHHHhc-c---ccccccCcccEEEEeccccc
Q psy13788 774 KKVVELTGDVTPDIQ-AISSASVIVTTPEKW-DGVSRS-W---QNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~-~~~~~~IiV~Tpe~l-~~l~~~-~---~~~~~l~~l~~lViDEaH~l 830 (1034)
++++....+..+..+ ..-.|||+++|...+ .+.+|. . ......+.+.+.|+||+|.+
T Consensus 148 LsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 148 LSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred CceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 999988877655433 344799999999887 334441 1 11222467889999999975
No 169
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.73 E-value=3.8e-08 Score=116.37 Aligned_cols=160 Identities=13% Similarity=0.150 Sum_probs=88.8
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhhhhhHHHhhcc-c--------------------
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAY-H-------------------- 62 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------- 62 (1034)
++++++||+||+|.+.| +-+..++.++.++ ....|++.+|++.+-....+...+ +
T Consensus 145 l~~l~~lViDEad~~l~~g~~~~l~~i~~~~---~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~ 221 (460)
T PRK11776 145 LDALNTLVLDEADRMLDMGFQDAIDAIIRQA---PARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRF 221 (460)
T ss_pred HHHCCEEEEECHHHHhCcCcHHHHHHHHHhC---CcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEE
Confidence 57899999999999998 8888888888764 234567777764321111100000 0
Q ss_pred -------------------cCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhH-----HHHH
Q psy13788 63 -------------------TNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGIL-----DVLQ 117 (1034)
Q Consensus 63 -------------------~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~-----~~~~ 117 (1034)
+.++++|||++. ..+..+ .+.+.+. ...+ .+|+++. .+.+
T Consensus 222 ~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~-----~~~~~l----~~~L~~~------~~~v~~~hg~~~~~eR~~~l~ 286 (460)
T PRK11776 222 YEVSPDERLPALQRLLLHHQPESCVVFCNTK-----KECQEV----ADALNAQ------GFSALALHGDLEQRDRDQVLV 286 (460)
T ss_pred EEeCcHHHHHHHHHHHHhcCCCceEEEECCH-----HHHHHH----HHHHHhC------CCcEEEEeCCCCHHHHHHHHH
Confidence 111233443330 000011 1111110 1123 4577665 2333
Q ss_pred HhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEE
Q psy13788 118 IFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATII 196 (1034)
Q Consensus 118 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~ 196 (1034)
.|..+ .+...++|..++ .|+|+|. .+|| .|| .+.++..|.||+|||||.|- .|.++.+
T Consensus 287 ~F~~g--------~~~vLVaTdv~~-rGiDi~~v~~VI----~~d------~p~~~~~yiqR~GRtGR~g~--~G~ai~l 345 (460)
T PRK11776 287 RFANR--------SCSVLVATDVAA-RGLDIKALEAVI----NYE------LARDPEVHVHRIGRTGRAGS--KGLALSL 345 (460)
T ss_pred HHHcC--------CCcEEEEecccc-cccchhcCCeEE----Eec------CCCCHhHhhhhcccccCCCC--cceEEEE
Confidence 44332 233444444444 3899997 5554 254 34457899999999999886 5888888
Q ss_pred CCcccHH
Q psy13788 197 TPHEKLN 203 (1034)
Q Consensus 197 ~~~~~~~ 203 (1034)
..+++..
T Consensus 346 ~~~~e~~ 352 (460)
T PRK11776 346 VAPEEMQ 352 (460)
T ss_pred EchhHHH
Confidence 8776433
No 170
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.73 E-value=3.9e-07 Score=108.08 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=88.2
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCC
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSA 793 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 793 (1034)
..-.+|.||.|||||.+..-++-..+ ..++.++++|..+++|+.+...+++...- .|.....-.++.... ....
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l-~~~~~~VLvVShRrSL~~sL~~rf~~~~l--~gFv~Y~d~~~~~i~---~~~~ 122 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDAL-KNPDKSVLVVSHRRSLTKSLAERFKKAGL--SGFVNYLDSDDYIID---GRPY 122 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhc-cCCCCeEEEEEhHHHHHHHHHHHHhhcCC--Ccceeeecccccccc---cccc
Confidence 34578899999999996655443333 24689999999999999998887764110 111111111111111 1235
Q ss_pred cEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhH---HHHHHHHHHHhhhccCCCeEEEEEccCCCCH-
Q psy13788 794 SVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPV---LEVIVSRVNFISSYTKRNVRLVGLSTALANA- 868 (1034)
Q Consensus 794 ~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~---~~~il~rl~~l~~~~~~~~~iv~lSATl~~~- 868 (1034)
+-++++.+.+..+. ...+.+.++||+||+-.+.. -+.+. .+.+...+.. ......++|++-|++.+.
T Consensus 123 ~rLivqIdSL~R~~-----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~---lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 123 DRLIVQIDSLHRLD-----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKE---LIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred CeEEEEehhhhhcc-----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHH---HHHhCCeEEEecCCCCHHH
Confidence 66777777664332 33467789999999986654 22222 2333333333 234556799999999772
Q ss_pred HHHHhHh
Q psy13788 869 KDLATWL 875 (1034)
Q Consensus 869 ~~l~~~l 875 (1034)
-++.+.+
T Consensus 195 vdFl~~~ 201 (824)
T PF02399_consen 195 VDFLASC 201 (824)
T ss_pred HHHHHHh
Confidence 3444444
No 171
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.71 E-value=3.2e-08 Score=118.93 Aligned_cols=159 Identities=12% Similarity=0.140 Sum_probs=90.2
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh--hhhHHHhhccc-------------------
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR--IQSLVYDTAYH------------------- 62 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------------------- 62 (1034)
++.+++|||||+|.+.| +.+..++.++.++ ......|++.+|++.. +..+.+.....
T Consensus 157 l~~v~~lViDEAh~lld~gf~~~i~~il~~l-p~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~ 235 (572)
T PRK04537 157 LHACEICVLDEADRMFDLGFIKDIRFLLRRM-PERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQR 235 (572)
T ss_pred hhheeeeEecCHHHHhhcchHHHHHHHHHhc-ccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEE
Confidence 46789999999999998 8888888888774 3333557777776432 22221111000
Q ss_pred --------------------cCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhH-----HHH
Q psy13788 63 --------------------TNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGIL-----DVL 116 (1034)
Q Consensus 63 --------------------~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~-----~~~ 116 (1034)
++.+++||+.+. .. +..+.+.+.+. ...+ .+|+++. .+.
T Consensus 236 ~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~-----~~----ae~l~~~L~~~------g~~v~~lhg~l~~~eR~~il 300 (572)
T PRK04537 236 IYFPADEEKQTLLLGLLSRSEGARTMVFVNTK-----AF----VERVARTLERH------GYRVGVLSGDVPQKKRESLL 300 (572)
T ss_pred EEecCHHHHHHHHHHHHhcccCCcEEEEeCCH-----HH----HHHHHHHHHHc------CCCEEEEeCCCCHHHHHHHH
Confidence 112234443330 00 11112222111 1123 4566554 233
Q ss_pred HHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEE
Q psy13788 117 QIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATI 195 (1034)
Q Consensus 117 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i 195 (1034)
+.|..+ .+..+++|..++ -|||+|. +.|| .|| .+.++.+|.||+|||||.|. .|.+|.
T Consensus 301 ~~Fr~G--------~~~VLVaTdv~a-rGIDip~V~~VI----nyd------~P~s~~~yvqRiGRaGR~G~--~G~ai~ 359 (572)
T PRK04537 301 NRFQKG--------QLEILVATDVAA-RGLHIDGVKYVY----NYD------LPFDAEDYVHRIGRTARLGE--EGDAIS 359 (572)
T ss_pred HHHHcC--------CCeEEEEehhhh-cCCCccCCCEEE----EcC------CCCCHHHHhhhhcccccCCC--CceEEE
Confidence 444332 334444454444 3899996 4444 254 45678999999999999997 688888
Q ss_pred ECCcc
Q psy13788 196 ITPHE 200 (1034)
Q Consensus 196 ~~~~~ 200 (1034)
++.+.
T Consensus 360 ~~~~~ 364 (572)
T PRK04537 360 FACER 364 (572)
T ss_pred EecHH
Confidence 88764
No 172
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.70 E-value=4.5e-08 Score=116.07 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=32.6
Q ss_pred ccccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccch
Q psy13788 4 LTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSL 49 (1034)
Q Consensus 4 ~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~ 49 (1034)
+++++++|||||+|.+.+ +..+.+..++..+ ......|+++++++
T Consensus 234 ~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~-~~~~~~q~i~~SAT 279 (475)
T PRK01297 234 HLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT-PRKEERQTLLFSAT 279 (475)
T ss_pred ccccCceEEechHHHHHhcccHHHHHHHHHhC-CCCCCceEEEEEee
Confidence 468899999999999988 7666676666552 22234578887764
No 173
>KOG0925|consensus
Probab=98.68 E-value=2.6e-06 Score=93.51 Aligned_cols=226 Identities=14% Similarity=0.162 Sum_probs=125.2
Q ss_pred hHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcC
Q psy13788 702 IQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTG 781 (1034)
Q Consensus 702 ~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g 781 (1034)
-|++-|-.++..+.-+++++.||||||.-.--..+...... ...+....|.|--+.+.+.+.... +++..+.-.|
T Consensus 50 ~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-~~~v~CTQprrvaamsva~RVadE----MDv~lG~EVG 124 (699)
T KOG0925|consen 50 EQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-LTGVACTQPRRVAAMSVAQRVADE----MDVTLGEEVG 124 (699)
T ss_pred HhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-ccceeecCchHHHHHHHHHHHHHH----hccccchhcc
Confidence 35556666666788899999999999973222222222221 356677779998888877776654 3444443333
Q ss_pred CC-CccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEE
Q psy13788 782 DV-TPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVG 860 (1034)
Q Consensus 782 ~~-~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~ 860 (1034)
-. ..+.....+.=+-.+|-+++ ++..-....+...+.+|+||||.=. -.-..++.-++...... ++.++|.
T Consensus 125 ysIrfEdC~~~~T~Lky~tDgmL---lrEams~p~l~~y~viiLDeahERt----lATDiLmGllk~v~~~r-pdLk~vv 196 (699)
T KOG0925|consen 125 YSIRFEDCTSPNTLLKYCTDGML---LREAMSDPLLGRYGVIILDEAHERT----LATDILMGLLKEVVRNR-PDLKLVV 196 (699)
T ss_pred ccccccccCChhHHHHHhcchHH---HHHHhhCcccccccEEEechhhhhh----HHHHHHHHHHHHHHhhC-CCceEEE
Confidence 21 11110000111123344443 2222345668899999999999621 12222333333333333 5899999
Q ss_pred EccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHH
Q psy13788 861 LSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQT 940 (1034)
Q Consensus 861 lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~ 940 (1034)
+|||+ +...+..+++-.+ +.. .|.. .|.++.+..-+..++. .+....+++.- .....+-++||....++.
T Consensus 197 mSatl-~a~Kfq~yf~n~P--ll~-vpg~--~PvEi~Yt~e~erDyl---EaairtV~qih-~~ee~GDilvFLtgeeeI 266 (699)
T KOG0925|consen 197 MSATL-DAEKFQRYFGNAP--LLA-VPGT--HPVEIFYTPEPERDYL---EAAIRTVLQIH-MCEEPGDILVFLTGEEEI 266 (699)
T ss_pred eeccc-chHHHHHHhCCCC--eee-cCCC--CceEEEecCCCChhHH---HHHHHHHHHHH-hccCCCCEEEEecCHHHH
Confidence 99998 4566777766332 222 1222 3445544443333332 22222223222 223456899999999988
Q ss_pred HHHHHHHHHH
Q psy13788 941 RLTAIDLITI 950 (1034)
Q Consensus 941 ~~~a~~L~~~ 950 (1034)
+..++.+...
T Consensus 267 e~aC~~i~re 276 (699)
T KOG0925|consen 267 EDACRKISRE 276 (699)
T ss_pred HHHHHHHHHH
Confidence 8777777543
No 174
>KOG0390|consensus
Probab=98.66 E-value=1.6e-06 Score=103.30 Aligned_cols=162 Identities=19% Similarity=0.289 Sum_probs=107.6
Q ss_pred CCChhHHHHHHHHhc----C----CCc-EEEEcCCCChhhHHHHHHHHHHHHhCCC-----CeEEEEcCcHHHHHHHHHH
Q psy13788 698 HFNPIQTQIFHCLYH----T----DNN-VLLGAPTGSGKTIAAEITCFRVFKQCPE-----AKVVYIAPLKALVKERVAD 763 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~----~----~~~-vll~apTGsGKT~~~~l~il~~l~~~~~-----~~~lvi~Pt~~L~~q~~~~ 763 (1034)
.++|+|.+.+.-++. . +.+ +++.-..|+|||+-...-+...+.+.|. .+.|||+|. .|+.-|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 489999999987753 1 223 4555566999999888888888888888 999999996 787877887
Q ss_pred HHHHhhhhcCCeEEEEcCCCCccccc----------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCC
Q psy13788 764 WKVKFEARLKKKVVELTGDVTPDIQA----------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED 833 (1034)
Q Consensus 764 ~~~~~~~~~~~~v~~~~g~~~~~~~~----------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~ 833 (1034)
+.+.... ..+....+.|........ .-...|.+.+.+.+....+ ......++++|+||.|.+-+.
T Consensus 317 F~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~----~il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 317 FGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR----KILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH----HHhcCCCCeEEECCCCCccch
Confidence 7776664 245555566654430000 1135678888888754444 334577899999999999864
Q ss_pred ChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHh
Q psy13788 834 RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWL 875 (1034)
Q Consensus 834 ~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l 875 (1034)
....+. .+.++ .-.+.|+||+|+-. .++.+++
T Consensus 392 ~s~~~k-aL~~l--------~t~rRVLLSGTp~Q-Ndl~EyF 423 (776)
T KOG0390|consen 392 DSLTLK-ALSSL--------KTPRRVLLTGTPIQ-NDLKEYF 423 (776)
T ss_pred hhHHHH-HHHhc--------CCCceEEeeCCccc-ccHHHHH
Confidence 333332 33333 23456899999642 3444443
No 175
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.66 E-value=5.9e-08 Score=114.30 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=31.8
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccch
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSL 49 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~ 49 (1034)
++++++|||||+|.+.| +....++.++.++ ....|++.+|++
T Consensus 147 l~~v~~lViDEah~ll~~~~~~~i~~il~~l---~~~~q~l~~SAT 189 (456)
T PRK10590 147 LDQVEILVLDEADRMLDMGFIHDIRRVLAKL---PAKRQNLLFSAT 189 (456)
T ss_pred cccceEEEeecHHHHhccccHHHHHHHHHhC---CccCeEEEEeCC
Confidence 57899999999999998 8777777777663 233467777664
No 176
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.64 E-value=6.2e-08 Score=113.29 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=39.8
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCccc
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEK 201 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~ 201 (1034)
...++|..++ -|||+|. ..|| .|| -+.++.+|.||+|||||.|- .|.++.+..+++
T Consensus 307 ~vLVaTdv~~-rGiDip~v~~VI----~~d------~P~s~~~yiqR~GR~gR~G~--~G~ai~~~~~~~ 363 (423)
T PRK04837 307 DILVATDVAA-RGLHIPAVTHVF----NYD------LPDDCEDYVHRIGRTGRAGA--SGHSISLACEEY 363 (423)
T ss_pred cEEEEechhh-cCCCccccCEEE----EeC------CCCchhheEeccccccCCCC--CeeEEEEeCHHH
Confidence 4444444444 3899997 4444 255 23467899999999999995 699998887754
No 177
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.64 E-value=1.6e-07 Score=114.44 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=51.0
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHh
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLL 209 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~ 209 (1034)
.+...++|..+.+ |||.|. +.|| .|+ .+-++.+|.||+|||||.|. .|+++++...++...+..++
T Consensus 274 ~~~vlVaT~a~~~-GID~p~v~~VI----~~~------~p~s~~~y~Q~~GRaGR~G~--~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 274 DVKVMVATNAFGM-GIDKPNVRFVI----HYD------MPGNLESYYQEAGRAGRDGL--PAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CCcEEEEechhhc-cCcCCCCCEEE----EcC------CCCCHHHHhhhhccccCCCC--CceEEEecCHHHHHHHHHHH
Confidence 3455666666665 899996 5444 254 23457899999999999884 67889998888777777776
Q ss_pred cCCcc
Q psy13788 210 TNQIP 214 (1034)
Q Consensus 210 ~~~~~ 214 (1034)
....|
T Consensus 341 ~~~~~ 345 (591)
T TIGR01389 341 EQSEA 345 (591)
T ss_pred hccCC
Confidence 65443
No 178
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.62 E-value=5.6e-07 Score=108.53 Aligned_cols=130 Identities=16% Similarity=0.085 Sum_probs=92.7
Q ss_pred EEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc-------c
Q psy13788 718 LLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA-------I 790 (1034)
Q Consensus 718 ll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-------~ 790 (1034)
+..+.+|||||.+|+-.+-..+.. ++.+|+++|..+|..|..++++..|+. ..+..++++.+...+. .
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~--Gk~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA--GRGALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc--CCeEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHHHHHHhC
Confidence 334446999999999988888776 788999999999999999999887752 4688899887765432 2
Q ss_pred CCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccC--CCChhH--HHHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 791 SSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG--EDRGPV--LEVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 791 ~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~--~~~~~~--~~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
..++|+|+|-.. -...++++++||+||=|--. ++.++. .+.+. .+ .....++.+|+.|||++
T Consensus 239 G~~~IViGtRSA---------vFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA-~~----Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 239 GQARVVVGTRSA---------VFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVA-LL----RAHQHGCALLIGGHART 304 (665)
T ss_pred CCCcEEEEccee---------EEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHH-HH----HHHHcCCcEEEECCCCC
Confidence 357999999432 34457899999999999542 222222 12221 11 11234788999999985
No 179
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.62 E-value=1.3e-07 Score=116.37 Aligned_cols=89 Identities=10% Similarity=0.081 Sum_probs=61.4
Q ss_pred eecchhHHHH-HHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCC
Q psy13788 107 YVHIGILDVL-QIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGR 184 (1034)
Q Consensus 107 ~~h~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR 184 (1034)
++|+||...+ +...+.+ ....+...++|-.|++ |||.|. ++||. |+ .+-++.+|.|++|||||
T Consensus 709 ~YHAGLs~eeR~~vqe~F----~~Gei~VLVATdAFGM-GIDkPDVR~VIH----yd------lPkSiEsYyQriGRAGR 773 (1195)
T PLN03137 709 FYHGSMDPAQRAFVQKQW----SKDEINIICATVAFGM-GINKPDVRFVIH----HS------LPKSIEGYHQECGRAGR 773 (1195)
T ss_pred eeeCCCCHHHHHHHHHHH----hcCCCcEEEEechhhc-CCCccCCcEEEE----cC------CCCCHHHHHhhhcccCC
Confidence 6688887322 2222222 1225566777777776 899997 66663 65 44567999999999999
Q ss_pred CCccccceEEEECCcccHHHHHHHhcCC
Q psy13788 185 PQYNTSGHATIITPHEKLNHYLSLLTNQ 212 (1034)
Q Consensus 185 ~~~d~~G~~~i~~~~~~~~~y~~~~~~~ 212 (1034)
.|. .|.++++....+......++...
T Consensus 774 DG~--~g~cILlys~~D~~~~~~lI~~~ 799 (1195)
T PLN03137 774 DGQ--RSSCVLYYSYSDYIRVKHMISQG 799 (1195)
T ss_pred CCC--CceEEEEecHHHHHHHHHHHhcc
Confidence 987 68999998877666677766543
No 180
>KOG0953|consensus
Probab=98.60 E-value=1.3e-07 Score=105.22 Aligned_cols=181 Identities=20% Similarity=0.311 Sum_probs=102.1
Q ss_pred ccccccEEEEeeeecccC-CCCchHHH----HHHhhhhccccceeec--------------ccchhhhhhHH-----H--
Q psy13788 4 LTELVKLLIIDEVHLLHG-DRGPVIEA----LVARTLRQIGQEVFKG--------------VKSLNRIQSLV-----Y-- 57 (1034)
Q Consensus 4 ~~~~v~~vViDEvH~l~d-~RG~~le~----li~~~~~~~~~~~~~~--------------~~~~~~~~~~~-----~-- 57 (1034)
...-.++.|||||+|+.| .||+.|-- +.|.=++..+.+..+- +....++..+. .
T Consensus 272 v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~vev~~YeRl~pL~v~~~~~~s 351 (700)
T KOG0953|consen 272 VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDVEVREYERLSPLVVEETALGS 351 (700)
T ss_pred cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCeeEEEeecccCcceehhhhhhh
Confidence 345678999999999999 99999975 3333333333222211 01111111111 0
Q ss_pred hhccccCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccceecchhH----HHHH--HhhhcCCCcccccc
Q psy13788 58 DTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGIL----DVLQ--IFGRAGRPQYNTSD 131 (1034)
Q Consensus 58 ~~~~~~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~h~~~~----~~~~--~~~~~~~~~~~~~~ 131 (1034)
-...+|+.-++.|+++ .|+.+.+++.+.-.+ .+.+-=|.| ...+ .|.. .+..
T Consensus 352 l~nlk~GDCvV~FSkk-------~I~~~k~kIE~~g~~---------k~aVIYGsLPPeTr~aQA~~FNd------~~~e 409 (700)
T KOG0953|consen 352 LSNLKPGDCVVAFSKK-------DIFTVKKKIEKAGNH---------KCAVIYGSLPPETRLAQAALFND------PSNE 409 (700)
T ss_pred hccCCCCCeEEEeehh-------hHHHHHHHHHHhcCc---------ceEEEecCCCCchhHHHHHHhCC------CCCc
Confidence 1133356556667775 344555555433332 222322444 1221 2211 1123
Q ss_pred ccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCcc-ccceEEEECCcccHHHHHHHh
Q psy13788 132 LGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYN-TSGHATIITPHEKLNHYLSLL 209 (1034)
Q Consensus 132 l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d-~~G~~~i~~~~~~~~~y~~~~ 209 (1034)
-...+++-.+.| |.||-- |||+.+..+||++. .+++++++++|++|||||-|-- ..|++.-+-. +++....+.|
T Consensus 410 ~dvlVAsDAIGM-GLNL~IrRiiF~sl~Kysg~e--~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~-eDL~~L~~~l 485 (700)
T KOG0953|consen 410 CDVLVASDAIGM-GLNLNIRRIIFYSLIKYSGRE--TEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS-EDLKLLKRIL 485 (700)
T ss_pred cceEEeeccccc-ccccceeEEEEeecccCCccc--ceeccHHHHHHHhhcccccccCCcCceEEEeeH-hhHHHHHHHH
Confidence 355666666776 899986 88998899999664 4899999999999999997541 3455444433 3344455555
Q ss_pred c
Q psy13788 210 T 210 (1034)
Q Consensus 210 ~ 210 (1034)
.
T Consensus 486 ~ 486 (700)
T KOG0953|consen 486 K 486 (700)
T ss_pred h
Confidence 4
No 181
>KOG1000|consensus
Probab=98.60 E-value=2.7e-06 Score=93.60 Aligned_cols=151 Identities=18% Similarity=0.183 Sum_probs=99.7
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
+-|+|.+-+...++.|..+++.-.-|-|||+-++..+ ..... ....||++|. .+-..|.+.+...+.....+.+
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA-~yyra--EwplliVcPA-svrftWa~al~r~lps~~pi~v-- 272 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQALAIA-RYYRA--EWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFV-- 272 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH-HHHhh--cCcEEEEecH-HHhHHHHHHHHHhcccccceEE--
Confidence 6789999887777799999999999999999765433 33332 4678999996 4555566666666655434333
Q ss_pred EcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEE
Q psy13788 779 LTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRL 858 (1034)
Q Consensus 779 ~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~i 858 (1034)
..+..+.-........|.|.+.+++..+-.. ..-...+++|+||.|+|.++.......++.-+ ..-.++
T Consensus 273 v~~~~D~~~~~~t~~~v~ivSye~ls~l~~~----l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dll-------k~akhv 341 (689)
T KOG1000|consen 273 VDKSSDPLPDVCTSNTVAIVSYEQLSLLHDI----LKKEKYRVVIFDESHMLKDSKTKRTKAATDLL-------KVAKHV 341 (689)
T ss_pred EecccCCccccccCCeEEEEEHHHHHHHHHH----HhcccceEEEEechhhhhccchhhhhhhhhHH-------HHhhhe
Confidence 3333222222233567999999988554332 22345789999999999875444444444332 234578
Q ss_pred EEEccCCC
Q psy13788 859 VGLSTALA 866 (1034)
Q Consensus 859 v~lSATl~ 866 (1034)
|+||+|++
T Consensus 342 ILLSGTPa 349 (689)
T KOG1000|consen 342 ILLSGTPA 349 (689)
T ss_pred EEecCCcc
Confidence 99999964
No 182
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.58 E-value=2.6e-07 Score=108.54 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=40.4
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCccc
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEK 201 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~ 201 (1034)
.+...++|..++ .|||+|. .+|| .|| .+.+..+|.||+|||||.|- .|.++.+....+
T Consensus 295 ~~~vLVaTd~~~-~GiDip~v~~VI----~~d------~p~s~~~yiqr~GR~gR~g~--~g~ai~l~~~~d 353 (434)
T PRK11192 295 RVNVLVATDVAA-RGIDIDDVSHVI----NFD------MPRSADTYLHRIGRTGRAGR--KGTAISLVEAHD 353 (434)
T ss_pred CCcEEEEccccc-cCccCCCCCEEE----EEC------CCCCHHHHhhcccccccCCC--CceEEEEecHHH
Confidence 334455555455 3899997 5555 254 34567999999999999876 577887776643
No 183
>KOG0385|consensus
Probab=98.55 E-value=1.2e-06 Score=101.02 Aligned_cols=126 Identities=21% Similarity=0.203 Sum_probs=86.2
Q ss_pred CCChhHHHHHH---HHhcCCCcEEEEcCCCChhhHH--HHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 698 HFNPIQTQIFH---CLYHTDNNVLLGAPTGSGKTIA--AEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 698 ~~~~~Q~~ai~---~l~~~~~~vll~apTGsGKT~~--~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
.++++|.+-++ .+++.|-|.|+.-.-|-|||+- +++.-+.... +-.+.-||++|.-.| ..+.+++++ |. .
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~-~~~GPfLVi~P~StL-~NW~~Ef~r-f~--P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRK-GIPGPFLVIAPKSTL-DNWMNEFKR-FT--P 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhc-CCCCCeEEEeeHhhH-HHHHHHHHH-hC--C
Confidence 38899998664 4566788999999999999964 3333333332 235678999998766 456777764 33 3
Q ss_pred CCeEEEEcCCCCccccc------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC
Q psy13788 773 KKKVVELTGDVTPDIQA------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832 (1034)
Q Consensus 773 ~~~v~~~~g~~~~~~~~------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~ 832 (1034)
++++..+.|+....... ....+|+|+|.|....--. ...--..+++||||||++.+
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~----~lk~~~W~ylvIDEaHRiKN 303 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS----FLKKFNWRYLVIDEAHRIKN 303 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH----HHhcCCceEEEechhhhhcc
Confidence 58899999986443222 2367999999998732211 11113457999999999986
No 184
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.54 E-value=2.2e-07 Score=113.37 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=37.5
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECC
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITP 198 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~ 198 (1034)
...++|..++. |||+|. ++|| .|++. ..+...++||.|||||.|. .|.+++++.
T Consensus 510 ~ILVaT~vie~-GvDiP~v~~VI----i~~~~-----r~gls~lhQ~~GRvGR~g~--~g~~il~~~ 564 (630)
T TIGR00643 510 DILVATTVIEV-GVDVPNATVMV----IEDAE-----RFGLSQLHQLRGRVGRGDH--QSYCLLVYK 564 (630)
T ss_pred CEEEECceeec-CcccCCCcEEE----EeCCC-----cCCHHHHHHHhhhcccCCC--CcEEEEEEC
Confidence 44444544443 899995 5544 24432 2345899999999999864 799999994
No 185
>PTZ00110 helicase; Provisional
Probab=98.41 E-value=9e-07 Score=106.09 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=38.9
Q ss_pred ccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccH
Q psy13788 134 RTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKL 202 (1034)
Q Consensus 134 ~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~ 202 (1034)
.+++|-.++ -|||+|. .+|| .|| -+-++.+|.||+|||||.|- .|.++.+...++.
T Consensus 430 ILVaTdv~~-rGIDi~~v~~VI----~~d------~P~s~~~yvqRiGRtGR~G~--~G~ai~~~~~~~~ 486 (545)
T PTZ00110 430 IMIATDVAS-RGLDVKDVKYVI----NFD------FPNQIEDYVHRIGRTGRAGA--KGASYTFLTPDKY 486 (545)
T ss_pred EEEEcchhh-cCCCcccCCEEE----EeC------CCCCHHHHHHHhcccccCCC--CceEEEEECcchH
Confidence 344444444 3899997 4444 255 23456899999999999885 6899988877543
No 186
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.41 E-value=6.8e-07 Score=109.92 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=37.6
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCc
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~ 199 (1034)
...++|..++. |||+|. ++|| .|++.. .+.+.++||.|||||.|. .|.|+++++.
T Consensus 533 ~ILVaT~vie~-GiDip~v~~VI----i~~~~r-----~gls~lhQ~~GRvGR~g~--~g~~ill~~~ 588 (681)
T PRK10917 533 DILVATTVIEV-GVDVPNATVMV----IENAER-----FGLAQLHQLRGRVGRGAA--QSYCVLLYKD 588 (681)
T ss_pred CEEEECcceee-CcccCCCcEEE----EeCCCC-----CCHHHHHHHhhcccCCCC--ceEEEEEECC
Confidence 44444444443 899995 5444 244321 345789999999999875 7999999963
No 187
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.36 E-value=4.8e-06 Score=101.94 Aligned_cols=143 Identities=15% Similarity=0.217 Sum_probs=88.4
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHH-----HHhhhhc---CCeEEEEcCCC---
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWK-----VKFEARL---KKKVVELTGDV--- 783 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~-----~~~~~~~---~~~v~~~~g~~--- 783 (1034)
.++.+.++||+|||.+|+-.|+......+-.+.||+||+.++...+..-+. ..|.... .+....+.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 378999999999999999999998888778999999999999887665443 2333322 23344444332
Q ss_pred ------Cccccc--------cCCCcEEEECHhhHHHH-H-hccc------cc-ccc---Ccc-cEEEEecccccCCCChh
Q psy13788 784 ------TPDIQA--------ISSASVIVTTPEKWDGV-S-RSWQ------NR-NYV---QSV-ALIIIDEIHLLGEDRGP 836 (1034)
Q Consensus 784 ------~~~~~~--------~~~~~IiV~Tpe~l~~l-~-~~~~------~~-~~l---~~l-~~lViDEaH~l~~~~~~ 836 (1034)
....+. .....|.|+|.+.+..- . +... +. ..+ ... =.||+||.|++..+ +.
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-~k 218 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-NK 218 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc-hH
Confidence 111000 11468999999988431 1 1110 00 111 111 26999999999652 23
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 837 VLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 837 ~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
.++.+ ..+ . +.-++.+|||.++
T Consensus 219 ~~~~i-~~l-------n-pl~~lrysAT~~~ 240 (986)
T PRK15483 219 FYQAI-EAL-------K-PQMIIRFGATFPD 240 (986)
T ss_pred HHHHH-Hhc-------C-cccEEEEeeecCC
Confidence 44433 222 2 2235679999976
No 188
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.35 E-value=8.8e-07 Score=101.40 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=38.3
Q ss_pred cccccchhhhccCcccceEEEecCceeecCCCCeeeecChhhHHHHhhccCCCCcc--ccceEEEECCccc
Q psy13788 133 GRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYN--TSGHATIITPHEK 201 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d--~~G~~~i~~~~~~ 201 (1034)
...++|..++ .||++|..++|. | +.++..|.|++||+||.|-. +.|..+++...+.
T Consensus 280 ~ilvaT~~~~-~GiDi~~~~vi~----~--------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 280 FVIVATQVIE-ASLDISADVMIT----E--------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred eEEEECcchh-ceeccCCCEEEE----c--------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 4444555444 389999755542 2 23467899999999998864 3468888887643
No 189
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.32 E-value=2.1e-06 Score=104.10 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=42.3
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCccc
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEK 201 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~ 201 (1034)
.+..+++|-.++ .||++|. .+|| .|| .+.++..|.||+|||||.|- .|.+++++.+.+
T Consensus 295 ~~~ILVATdv~a-rGIDip~V~~VI----~~d------~P~~~e~yvqRiGRtGRaGr--~G~ai~~v~~~e 353 (629)
T PRK11634 295 RLDILIATDVAA-RGLDVERISLVV----NYD------IPMDSESYVHRIGRTGRAGR--AGRALLFVENRE 353 (629)
T ss_pred CCCEEEEcchHh-cCCCcccCCEEE----EeC------CCCCHHHHHHHhccccCCCC--cceEEEEechHH
Confidence 344555555555 3899997 5554 265 34567899999999999985 799999998754
No 190
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.31 E-value=1.7e-06 Score=94.81 Aligned_cols=73 Identities=22% Similarity=0.436 Sum_probs=59.3
Q ss_pred ccccCCCChhHHHHHHHH---hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCC----CeEEEEcCcHHHHHHHHHHHH
Q psy13788 693 LYKFSHFNPIQTQIFHCL---YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPE----AKVVYIAPLKALVKERVADWK 765 (1034)
Q Consensus 693 ~~~~~~~~~~Q~~ai~~l---~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~----~~~lvi~Pt~~L~~q~~~~~~ 765 (1034)
.|+|. |+|.|.+....+ +..++++++.||||+|||++++.|++..+...+. .+++|.++|.++..|....++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 36777 799999955443 2478899999999999999999999877665433 389999999999998877776
Q ss_pred H
Q psy13788 766 V 766 (1034)
Q Consensus 766 ~ 766 (1034)
+
T Consensus 83 ~ 83 (289)
T smart00489 83 K 83 (289)
T ss_pred h
Confidence 4
No 191
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.31 E-value=1.7e-06 Score=94.81 Aligned_cols=73 Identities=22% Similarity=0.436 Sum_probs=59.3
Q ss_pred ccccCCCChhHHHHHHHH---hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCC----CeEEEEcCcHHHHHHHHHHHH
Q psy13788 693 LYKFSHFNPIQTQIFHCL---YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPE----AKVVYIAPLKALVKERVADWK 765 (1034)
Q Consensus 693 ~~~~~~~~~~Q~~ai~~l---~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~----~~~lvi~Pt~~L~~q~~~~~~ 765 (1034)
.|+|. |+|.|.+....+ +..++++++.||||+|||++++.|++..+...+. .+++|.++|.++..|....++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 36777 799999955443 2478899999999999999999999877665433 389999999999998877776
Q ss_pred H
Q psy13788 766 V 766 (1034)
Q Consensus 766 ~ 766 (1034)
+
T Consensus 83 ~ 83 (289)
T smart00488 83 K 83 (289)
T ss_pred h
Confidence 4
No 192
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.30 E-value=3.9e-06 Score=89.44 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=89.6
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
|++.|.-+.-.+. .|+ ++.+.||=|||+++.+|+.-.... +..|=|++.+.-||..=++.+...|.. +|++++.
T Consensus 78 p~~vQll~~l~L~-~G~--laEm~TGEGKTli~~l~a~~~AL~--G~~V~vvT~NdyLA~RD~~~~~~~y~~-LGlsv~~ 151 (266)
T PF07517_consen 78 PYDVQLLGALALH-KGR--LAEMKTGEGKTLIAALPAALNALQ--GKGVHVVTSNDYLAKRDAEEMRPFYEF-LGLSVGI 151 (266)
T ss_dssp --HHHHHHHHHHH-TTS--EEEESTTSHHHHHHHHHHHHHHTT--SS-EEEEESSHHHHHHHHHHHHHHHHH-TT--EEE
T ss_pred ccHHHHhhhhhcc-cce--eEEecCCCCcHHHHHHHHHHHHHh--cCCcEEEeccHHHhhccHHHHHHHHHH-hhhcccc
Confidence 7777777765553 444 999999999999998887655444 788889999999999888877766664 9999999
Q ss_pred EcCCCCccc-cccCCCcEEEECHhhHH-HHHhc-cc---cccccCcccEEEEecccccC
Q psy13788 779 LTGDVTPDI-QAISSASVIVTTPEKWD-GVSRS-WQ---NRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 779 ~~g~~~~~~-~~~~~~~IiV~Tpe~l~-~l~~~-~~---~~~~l~~l~~lViDEaH~l~ 831 (1034)
..++.+... +..-.++|+.+|...+. +.++. +. .....+...++||||+|.++
T Consensus 152 ~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 152 ITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred CccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 998776443 22336899999999883 33332 11 12224688999999999864
No 193
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.20 E-value=4.5e-06 Score=104.42 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=37.2
Q ss_pred cccccchhhhccCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcc
Q psy13788 133 GRTASNYYIKHNDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE 200 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~ 200 (1034)
...++|..++ .||++|. .|||..... .+..+|.||.||+||.|. .|.|++++..+
T Consensus 714 ~ILVaT~iie-~GIDIp~v~~VIi~~a~~----------~gls~l~Qr~GRvGR~g~--~g~aill~~~~ 770 (926)
T TIGR00580 714 QVLVCTTIIE-TGIDIPNANTIIIERADK----------FGLAQLYQLRGRVGRSKK--KAYAYLLYPHQ 770 (926)
T ss_pred CEEEECChhh-cccccccCCEEEEecCCC----------CCHHHHHHHhcCCCCCCC--CeEEEEEECCc
Confidence 3444444444 2899994 566533222 234689999999999875 89999998653
No 194
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.19 E-value=2.2e-05 Score=94.96 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=37.9
Q ss_pred Ccccce-EEEecCceeecC--CCCeeeecChhhHHHHhhccCCCCccccceEEEECCccc
Q psy13788 145 DIELFT-EHMTKGTEMYNA--KHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEK 201 (1034)
Q Consensus 145 gvn~pa-~vii~~~~~~~~--~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~ 201 (1034)
|+++|- ++||-.-..+.| ..|...++|...|.|+.|||||. ..|.++-+.+.+.
T Consensus 459 GIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~ 515 (675)
T PHA02653 459 SVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDL 515 (675)
T ss_pred cccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHH
Confidence 788886 555533222222 23334678999999999999998 4799998887754
No 195
>KOG0922|consensus
Probab=98.15 E-value=0.00011 Score=85.03 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=100.1
Q ss_pred eeecCCCCe----eeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHhcCCcceecccccchHHHHhhhhhc
Q psy13788 158 EMYNAKHGC----YVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAEVAL 233 (1034)
Q Consensus 158 ~~~~~~~~~----~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~~~~~i~s~l~~~~~~~ln~e~~~ 233 (1034)
..|||+.|- ..++|-..-.|+.|||||.| .|.++=+-..+ .|.++...+.| ||
T Consensus 347 ~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~---~~~~~~~~~~P---------------EI-- 403 (674)
T KOG0922|consen 347 KKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTES---AYDKMPLQTVP---------------EI-- 403 (674)
T ss_pred EeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeHH---HHhhcccCCCC---------------ce--
Confidence 568888763 24688999999999999974 68888776664 56665555555 44
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHH
Q psy13788 234 GTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRT 313 (1034)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~ 313 (1034)
.-..+...+|.+-++|.- |.+ +|-|. . .| -.
T Consensus 404 ------------------~R~~Ls~~vL~Lkalgi~----d~l-----~F~f~-----------d------~P-----~~ 434 (674)
T KOG0922|consen 404 ------------------QRVNLSSAVLQLKALGIN----DPL-----RFPFI-----------D------PP-----PP 434 (674)
T ss_pred ------------------eeechHHHHHHHHhcCCC----Ccc-----cCCCC-----------C------CC-----Ch
Confidence 113344566666676652 111 11122 1 11 12
Q ss_pred HHHHHHHHHhhhcCceEEecCCCCcccCh-HHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhh
Q psy13788 314 TLIENAAQILDKAHMIRFNMRTRDLAITD-LGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEE 392 (1034)
Q Consensus 314 ~~~~~~l~~L~~~~~i~~~~~~~~~~~T~-lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E 392 (1034)
+.+..|++.|...|-|.. +| ..|+ +|+.+|.+-+.|.-.+.+...-.-.+. .+++.+++... -.++..|..+
T Consensus 435 ~~l~~AL~~L~~lgald~---~g--~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~-~e~l~i~a~Ls-v~~~f~~p~~ 507 (674)
T KOG0922|consen 435 EALEEALEELYSLGALDD---RG--KLTSPLGRQMAELPLEPHLSKMLLKSSELGCS-EEILTIAAMLS-VQSVFSRPKD 507 (674)
T ss_pred HHHHHHHHHHHhcCcccC---cC--CcCchHHhhhhhcCCCcchhhhhhhccccCCc-chhhhheeeee-ccceecCccc
Confidence 457789999999999963 33 3444 999999999999999988876444433 45555555444 4555555444
Q ss_pred h
Q psy13788 393 L 393 (1034)
Q Consensus 393 ~ 393 (1034)
+
T Consensus 508 ~ 508 (674)
T KOG0922|consen 508 K 508 (674)
T ss_pred h
Confidence 3
No 196
>KOG0387|consensus
Probab=98.04 E-value=0.00021 Score=83.72 Aligned_cols=153 Identities=16% Similarity=0.254 Sum_probs=98.3
Q ss_pred cCCCChhHHHHHHH---HhcCCCcEEEEcCCCChhhH--HHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q psy13788 696 FSHFNPIQTQIFHC---LYHTDNNVLLGAPTGSGKTI--AAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEA 770 (1034)
Q Consensus 696 ~~~~~~~Q~~ai~~---l~~~~~~vll~apTGsGKT~--~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~ 770 (1034)
+..+.|+|...+.= ++.++.-.|+.-.-|-|||+ ++.|+.+.+-.. -...+|||||. .++.||.++|...+..
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k-~~~paLIVCP~-Tii~qW~~E~~~w~p~ 280 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGK-LTKPALIVCPA-TIIHQWMKEFQTWWPP 280 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhccc-ccCceEEEccH-HHHHHHHHHHHHhCcc
Confidence 34588999998754 44456678999999999994 344444433211 13789999996 6889999999876654
Q ss_pred hcCCeEEEEcCCCCccc----------------cccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCC
Q psy13788 771 RLKKKVVELTGDVTPDI----------------QAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDR 834 (1034)
Q Consensus 771 ~~~~~v~~~~g~~~~~~----------------~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~ 834 (1034)
.++.+++|..+... .......|+++|.+.+... .....-...+++|+||.|.+-+..
T Consensus 281 ---~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~----~d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 281 ---FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ----GDDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred ---eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc----CcccccccccEEEecCcccccCCc
Confidence 78888887544211 1123568999999876322 111222346799999999998733
Q ss_pred hhHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 835 GPVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 835 ~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
.. +...+..+ . ..+.|.||.|+-
T Consensus 354 s~-islackki-------~-T~~RiILSGTPi 376 (923)
T KOG0387|consen 354 SK-ISLACKKI-------R-TVHRIILSGTPI 376 (923)
T ss_pred cH-HHHHHHhc-------c-ccceEEeeCccc
Confidence 22 22223222 2 334567777753
No 197
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.03 E-value=2.9e-05 Score=82.89 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=50.2
Q ss_pred CChhHHHHHHHHhcCCCc-EEEEcCCCChhhHHHHHHHHHHH------HhCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy13788 699 FNPIQTQIFHCLYHTDNN-VLLGAPTGSGKTIAAEITCFRVF------KQCPEAKVVYIAPLKALVKERVADWKV 766 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~-vll~apTGsGKT~~~~l~il~~l------~~~~~~~~lvi~Pt~~L~~q~~~~~~~ 766 (1034)
+++-|.+|+..++ .... .+|.+|.|+|||.+..-.+...+ ....+.++++++|+.+-+++...++.+
T Consensus 2 ln~~Q~~Ai~~~~-~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSAL-SSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHC-TSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH-cCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 7889999999988 5555 99999999999965544443331 245689999999999999999988876
No 198
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.02 E-value=2.4e-05 Score=100.27 Aligned_cols=43 Identities=28% Similarity=0.494 Sum_probs=32.5
Q ss_pred Ccccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCc
Q psy13788 145 DIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 145 gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~ 199 (1034)
|+++|. .|||-.... ++..+|.|+.||+||.|. .|.+++++..
T Consensus 874 GIDIP~v~~VIi~~ad~----------fglaq~~Qr~GRvGR~g~--~g~a~ll~~~ 918 (1147)
T PRK10689 874 GIDIPTANTIIIERADH----------FGLAQLHQLRGRVGRSHH--QAYAWLLTPH 918 (1147)
T ss_pred ccccccCCEEEEecCCC----------CCHHHHHHHhhccCCCCC--ceEEEEEeCC
Confidence 899995 566543322 344789999999999865 7999999865
No 199
>KOG1002|consensus
Probab=98.02 E-value=4.2e-05 Score=84.19 Aligned_cols=166 Identities=21% Similarity=0.248 Sum_probs=104.9
Q ss_pred CChhHHHHHHHHhcCC----CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 699 FNPIQTQIFHCLYHTD----NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~----~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
+-|+|.+-+.=+..+. .-.++.-.-|.|||+-....++..+ .+..+||++|+.||. |+.+++.. +.. ...
T Consensus 185 LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~---~ra~tLVvaP~VAlm-QW~nEI~~-~T~-gsl 258 (791)
T KOG1002|consen 185 LLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV---DRAPTLVVAPTVALM-QWKNEIER-HTS-GSL 258 (791)
T ss_pred chhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc---ccCCeeEEccHHHHH-HHHHHHHH-hcc-Cce
Confidence 6789998764332111 2367888999999987655555433 356799999999985 67777764 333 457
Q ss_pred eEEEEcCCCC-ccccccCCCcEEEECHhhHHHHHhccc-----------cccccCccc--EEEEecccccCCCChhHHHH
Q psy13788 775 KVVELTGDVT-PDIQAISSASVIVTTPEKWDGVSRSWQ-----------NRNYVQSVA--LIIIDEIHLLGEDRGPVLEV 840 (1034)
Q Consensus 775 ~v~~~~g~~~-~~~~~~~~~~IiV~Tpe~l~~l~~~~~-----------~~~~l~~l~--~lViDEaH~l~~~~~~~~~~ 840 (1034)
++..++|... .+.+.+.++|++++|...+.+..|+-. ....+.+++ -||+||||-+.+.....-+.
T Consensus 259 kv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArA 338 (791)
T KOG1002|consen 259 KVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARA 338 (791)
T ss_pred EEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHH
Confidence 7888888543 444557799999999999877776411 112234444 49999999998622222222
Q ss_pred HHHHHHHhhhccCCCeEEEEEccCCCC-----HHHHHhHhcccC
Q psy13788 841 IVSRVNFISSYTKRNVRLVGLSTALAN-----AKDLATWLNITK 879 (1034)
Q Consensus 841 il~rl~~l~~~~~~~~~iv~lSATl~~-----~~~l~~~l~~~~ 879 (1034)
+. .++ ..+..++|+|+-. .-.+.++|.+.+
T Consensus 339 V~-~L~--------tt~rw~LSGTPLQNrigElySLiRFL~i~P 373 (791)
T KOG1002|consen 339 VF-ALE--------TTYRWCLSGTPLQNRIGELYSLIRFLNINP 373 (791)
T ss_pred HH-hhH--------hhhhhhccCCcchhhHHHHHHHHHHHccCc
Confidence 22 121 2334688888543 134555665544
No 200
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.00 E-value=1.2e-05 Score=77.03 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=64.3
Q ss_pred HHHHHHHhhC-CCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCC
Q psy13788 916 PIYTAIKQHS-PEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAA 994 (1034)
Q Consensus 916 ~~~~~l~~~~-~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~ 994 (1034)
.+.+.+.... .++++||||+++..++.+++.|.+. ..++.++||+
T Consensus 16 ~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~----------------------------------~~~~~~~~~~ 61 (131)
T cd00079 16 ALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP----------------------------------GIKVAALHGD 61 (131)
T ss_pred HHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc----------------------------------CCcEEEEECC
Confidence 4445555443 5679999999999999888877541 2247899999
Q ss_pred CCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 995 AEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 995 ~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++..+|..+.+ . |.+|..++|+||+++++|+ |+.
T Consensus 62 ~~~~~~~~~~~--~--f~~~~~~ili~t~~~~~G~-d~~ 95 (131)
T cd00079 62 GSQEEREEVLK--D--FREGEIVVLVATDVIARGI-DLP 95 (131)
T ss_pred CCHHHHHHHHH--H--HHcCCCcEEEEcChhhcCc-Chh
Confidence 99999988877 6 9999999999999999999 974
No 201
>KOG0923|consensus
Probab=97.96 E-value=0.0012 Score=75.86 Aligned_cols=160 Identities=19% Similarity=0.236 Sum_probs=109.0
Q ss_pred eeecCCCCe----eeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHhcC-CcceecccccchHHHHhhhhh
Q psy13788 158 EMYNAKHGC----YVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTN-QIPIESNFVANLADNLNAEVA 232 (1034)
Q Consensus 158 ~~~~~~~~~----~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~~-~~~i~s~l~~~~~~~ln~e~~ 232 (1034)
..|+|+.|- ..++|-..-.|++|||||.| -|.|+=+-+.- .|.+.|.. +-| ||
T Consensus 563 nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~---aY~~eLE~~t~P---------------EI- 620 (902)
T KOG0923|consen 563 NSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAW---AYEHELEEMTVP---------------EI- 620 (902)
T ss_pred cCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechh---hhhhhhccCCCc---------------ce-
Confidence 448888873 25688889999999999975 58888776654 34443322 112 33
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHH
Q psy13788 233 LGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHR 312 (1034)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~ 312 (1034)
.| ..|++-+|.+-++|.- | .+..-|+-- |.
T Consensus 621 ----------qR---------tnL~nvVL~LkSLGI~----D---l~~FdFmDp-------------------Pp----- 650 (902)
T KOG0923|consen 621 ----------QR---------TNLGNVVLLLKSLGIH----D---LIHFDFLDP-------------------PP----- 650 (902)
T ss_pred ----------ee---------ccchhHHHHHHhcCcc----h---hcccccCCC-------------------CC-----
Confidence 00 1233455666677651 1 222222211 11
Q ss_pred HHHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhh
Q psy13788 313 TTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEE 392 (1034)
Q Consensus 313 ~~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E 392 (1034)
.+.+..+|+.|...|-+ +..-.+|.+||-|+.|-++|.=++.+...=+-. ....++.+.++...+..+..|+.+
T Consensus 651 ~etL~~aLE~LyaLGAL-----n~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~-cs~EiitiaamlS~~~svfyrpk~ 724 (902)
T KOG0923|consen 651 TETLLKALEQLYALGAL-----NHLGELTKLGRRMAEFPVDPMLSKMIVASEKYK-CSEEIITIAAMLSVGASVFYRPKD 724 (902)
T ss_pred hHHHHHHHHHHHHhhcc-----ccccchhhhhhhhhhcCCCHHHHhHHhhhcccc-chHHHHHHHHHHhcCchheecchh
Confidence 24567889999999998 556799999999999999999999888754444 337899999999999999998887
Q ss_pred hHH
Q psy13788 393 LHE 395 (1034)
Q Consensus 393 ~~~ 395 (1034)
+..
T Consensus 725 ~~v 727 (902)
T KOG0923|consen 725 KQV 727 (902)
T ss_pred hhh
Confidence 554
No 202
>KOG0384|consensus
Probab=97.96 E-value=4.7e-05 Score=92.76 Aligned_cols=156 Identities=21% Similarity=0.326 Sum_probs=97.6
Q ss_pred CCChhHHHHHH----HHhcCCCcEEEEcCCCChhhH---HHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q psy13788 698 HFNPIQTQIFH----CLYHTDNNVLLGAPTGSGKTI---AAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEA 770 (1034)
Q Consensus 698 ~~~~~Q~~ai~----~l~~~~~~vll~apTGsGKT~---~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~ 770 (1034)
+++.+|.+-++ .++ .+.|+|+.-.-|-|||+ +|+-.++..... .+..|+|+|.-.+. .|...|..
T Consensus 370 ~LRdyQLeGlNWl~~~W~-~~~n~ILADEmgLgktvqti~fl~~l~~~~~~--~gpflvvvplst~~-----~W~~ef~~ 441 (1373)
T KOG0384|consen 370 ELRDYQLEGLNWLLYSWY-KRNNCILADEMGLGKTVQTITFLSYLFHSLQI--HGPFLVVVPLSTIT-----AWEREFET 441 (1373)
T ss_pred hhhhhhcccchhHHHHHH-hcccceehhhcCCCcchHHHHHHHHHHHhhhc--cCCeEEEeehhhhH-----HHHHHHHH
Confidence 37788887654 344 78899999999999984 455455544332 56789999986543 34444444
Q ss_pred hcCCeEEEEcCCCCccccc------------cCCCcEEEECHhhHHHHHhccccccccCc--ccEEEEecccccCCCChh
Q psy13788 771 RLKKKVVELTGDVTPDIQA------------ISSASVIVTTPEKWDGVSRSWQNRNYVQS--VALIIIDEIHLLGEDRGP 836 (1034)
Q Consensus 771 ~~~~~v~~~~g~~~~~~~~------------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~--l~~lViDEaH~l~~~~~~ 836 (1034)
-+..++.+++|+.....-. .-..+++++|.+.+. .....+.. ..++++||||+|.+.-..
T Consensus 442 w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~L------kDk~~L~~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 442 WTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVL------KDKAELSKIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred HhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHh------ccHhhhccCCcceeeecHHhhcCchHHH
Confidence 4568899999976432111 114789999999873 12233333 457999999999874444
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEEccCC-CC-HHHHHhHhc
Q psy13788 837 VLEVIVSRVNFISSYTKRNVRLVGLSTAL-AN-AKDLATWLN 876 (1034)
Q Consensus 837 ~~~~il~rl~~l~~~~~~~~~iv~lSATl-~~-~~~l~~~l~ 876 (1034)
.|.. +..+ ..+-+ +++|.|+ -| .+++...++
T Consensus 516 l~~~-l~~f-------~~~~r-llitgTPlQNsikEL~sLl~ 548 (1373)
T KOG0384|consen 516 LYES-LNQF-------KMNHR-LLITGTPLQNSLKELWSLLH 548 (1373)
T ss_pred HHHH-HHHh-------cccce-eeecCCCccccHHHHHHHhc
Confidence 4444 2222 22333 5666664 33 455555554
No 203
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.90 E-value=0.00017 Score=88.37 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=89.0
Q ss_pred eeecCCCCe----eeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHhcCCcceecccccchHHHHhhhhhc
Q psy13788 158 EMYNAKHGC----YVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAEVAL 233 (1034)
Q Consensus 158 ~~~~~~~~~----~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~~~~~i~s~l~~~~~~~ln~e~~~ 233 (1034)
.+||+..|- -.++|-....|+.|||||- ..|.|+=+-+.+ .|..+...+.| ||
T Consensus 344 ~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~---~pGicyRLyse~---~~~~~~~~t~P---------------EI-- 400 (845)
T COG1643 344 KRYDPRTGLTRLETEPISKASADQRAGRAGRT---GPGICYRLYSEE---DFLAFPEFTLP---------------EI-- 400 (845)
T ss_pred cccccccCceeeeEEEechhhhhhhccccccC---CCceEEEecCHH---HHHhcccCCCh---------------hh--
Confidence 468888763 2579999999999999996 358887776653 45565555555 44
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHH
Q psy13788 234 GTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRT 313 (1034)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~ 313 (1034)
+| ..+...+|.+-+.|.-.++ ..|-|. . -|. .
T Consensus 401 ---------lr---------tdLs~~vL~l~~~G~~~d~--------~~f~fl-----------d------~P~-----~ 432 (845)
T COG1643 401 ---------LR---------TDLSGLVLQLKSLGIGQDI--------APFPFL-----------D------PPP-----E 432 (845)
T ss_pred ---------hh---------cchHHHHHHHHhcCCCCCc--------ccCccC-----------C------CCC-----h
Confidence 11 2333456666666652011 012222 0 111 2
Q ss_pred HHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCC
Q psy13788 314 TLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTK 366 (1034)
Q Consensus 314 ~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~ 366 (1034)
..+..|++.|...|.+..+ =..|++|+.||.+-++|.=+..+...-..
T Consensus 433 ~~i~~A~~~L~~LGAld~~-----g~LT~lG~~ms~lpldprLA~mLl~a~~~ 480 (845)
T COG1643 433 AAIQAALTLLQELGALDDS-----GKLTPLGKQMSLLPLDPRLARMLLTAPEG 480 (845)
T ss_pred HHHHHHHHHHHHcCCcCCC-----CCCCHHHHHHHhCCCChHHHHHHHhcccc
Confidence 4577899999999999543 34999999999999999999998886553
No 204
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.90 E-value=0.00011 Score=75.89 Aligned_cols=132 Identities=17% Similarity=0.231 Sum_probs=92.3
Q ss_pred CChhHHHHHHHHhc--CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeE
Q psy13788 699 FNPIQTQIFHCLYH--TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKV 776 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~--~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v 776 (1034)
.+|.|.++...+.+ ++.|.+.++-.|.|||.+ ++|++..+......-+.+++| ++|..|....+..+++...+.++
T Consensus 24 iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i 101 (229)
T PF12340_consen 24 IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRI 101 (229)
T ss_pred eeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCee
Confidence 89999999988874 467999999999999986 567777666655566667777 57999999999999998888777
Q ss_pred EEEcCCCC--cccc-----------ccCCCcEEEECHhhHHHHHhccc-----c-----------ccccCcccEEEEecc
Q psy13788 777 VELTGDVT--PDIQ-----------AISSASVIVTTPEKWDGVSRSWQ-----N-----------RNYVQSVALIIIDEI 827 (1034)
Q Consensus 777 ~~~~g~~~--~~~~-----------~~~~~~IiV~Tpe~l~~l~~~~~-----~-----------~~~l~~l~~lViDEa 827 (1034)
..+.=+.. .+.. ......|+++|||.+.++...+. . ..++.+...=|+||+
T Consensus 102 ~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEs 181 (229)
T PF12340_consen 102 YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDES 181 (229)
T ss_pred EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECc
Confidence 66543322 1111 01356799999998855433211 0 011233445789999
Q ss_pred cccCC
Q psy13788 828 HLLGE 832 (1034)
Q Consensus 828 H~l~~ 832 (1034)
|..++
T Consensus 182 De~L~ 186 (229)
T PF12340_consen 182 DEILS 186 (229)
T ss_pred hhccC
Confidence 98764
No 205
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.88 E-value=4.1e-05 Score=78.38 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=44.7
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHH
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L 756 (1034)
.|+.|..++.+++ ..+.+++.+|.|+|||+.++..+++.+.+..-.+++|+-|..+.
T Consensus 5 ~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 5 KNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp -SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred CCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 5789999999998 67789999999999999999999999988777899999998764
No 206
>KOG4439|consensus
Probab=97.86 E-value=7e-05 Score=86.16 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=107.7
Q ss_pred CChhHHHHHHHHhc----CCCcEEEEcCCCChhhHHHHHHHHHHHHh-----C---CCCeEEEEcCcHHHHHHHHHHHHH
Q psy13788 699 FNPIQTQIFHCLYH----TDNNVLLGAPTGSGKTIAAEITCFRVFKQ-----C---PEAKVVYIAPLKALVKERVADWKV 766 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~----~~~~vll~apTGsGKT~~~~l~il~~l~~-----~---~~~~~lvi~Pt~~L~~q~~~~~~~ 766 (1034)
+-|+|.+++.-+.- .+.-.|+...-|-|||++..-.++..-.. . ....+|||||- .|+.||..++.+
T Consensus 326 LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~~ 404 (901)
T KOG4439|consen 326 LMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVAR 404 (901)
T ss_pred cchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHHH
Confidence 67899999864431 23458889999999999765555433211 1 12359999996 788999999998
Q ss_pred HhhhhcCCeEEEEcCCCCc--cccccCCCcEEEECHhhHHH----HHhccccccccCcc--cEEEEecccccCCCChhHH
Q psy13788 767 KFEARLKKKVVELTGDVTP--DIQAISSASVIVTTPEKWDG----VSRSWQNRNYVQSV--ALIIIDEIHLLGEDRGPVL 838 (1034)
Q Consensus 767 ~~~~~~~~~v~~~~g~~~~--~~~~~~~~~IiV~Tpe~l~~----l~~~~~~~~~l~~l--~~lViDEaH~l~~~~~~~~ 838 (1034)
++.. -.++|..++|.... ..+.+..+||||+|+.-+.. -.........+.++ ..||+||||.+-+.....
T Consensus 405 rl~~-n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~- 482 (901)
T KOG4439|consen 405 RLEQ-NALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQC- 482 (901)
T ss_pred HHhh-cceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhH-
Confidence 8887 56889999997642 33346789999999876533 11111222233333 359999999998733222
Q ss_pred HHHHHHHHHhhhccCCCeEEEEEccCCC-C----HHHHHhHhcccC
Q psy13788 839 EVIVSRVNFISSYTKRNVRLVGLSTALA-N----AKDLATWLNITK 879 (1034)
Q Consensus 839 ~~il~rl~~l~~~~~~~~~iv~lSATl~-~----~~~l~~~l~~~~ 879 (1034)
...+.+++ ...| -++|+|+- | .-.+..|+++++
T Consensus 483 S~AVC~L~-------a~~R-WclTGTPiqNn~~DvysLlrFLr~~p 520 (901)
T KOG4439|consen 483 SKAVCKLS-------AKSR-WCLTGTPIQNNLWDVYSLLRFLRCPP 520 (901)
T ss_pred HHHHHHHh-------hcce-eecccCccccchhHHHHHHHHhcCCC
Confidence 22333332 2333 47888843 3 234455555543
No 207
>KOG1802|consensus
Probab=97.79 E-value=8.9e-05 Score=84.70 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=65.9
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+++..++.-|..|+..++ +..-.++++|+|+|||.+..-.+++...+ ....+|+++|+.--++|.++.+.+ .|
T Consensus 406 ~~lpkLN~SQ~~AV~~VL-~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~-----tg 478 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVL-QRPLSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHK-----TG 478 (935)
T ss_pred CCchhhchHHHHHHHHHH-cCCceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccchhHHHHHHHHHh-----cC
Confidence 356679999999999998 67779999999999998877777766665 478999999999999998888765 66
Q ss_pred CeEEEEc
Q psy13788 774 KKVVELT 780 (1034)
Q Consensus 774 ~~v~~~~ 780 (1034)
+++.-+.
T Consensus 479 LKVvRl~ 485 (935)
T KOG1802|consen 479 LKVVRLC 485 (935)
T ss_pred ceEeeee
Confidence 7766554
No 208
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.78 E-value=0.0013 Score=75.01 Aligned_cols=241 Identities=13% Similarity=0.128 Sum_probs=132.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHHhhh------------hcCCe--------E------------EEEcCCCCcccc---
Q psy13788 744 EAKVVYIAPLKALVKERVADWKVKFEA------------RLKKK--------V------------VELTGDVTPDIQ--- 788 (1034)
Q Consensus 744 ~~~~lvi~Pt~~L~~q~~~~~~~~~~~------------~~~~~--------v------------~~~~g~~~~~~~--- 788 (1034)
.++|||++|+|.-|.++++.+.+.+.. ..|.. . ..+.|+.+...+
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 589999999999999888877755443 11200 0 001111111100
Q ss_pred -----------ccCCCcEEEECHhhHHHHHhc----cccccccCcccEEEEecccccCCCChhHHHHHHHHHHHh-----
Q psy13788 789 -----------AISSASVIVTTPEKWDGVSRS----WQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFI----- 848 (1034)
Q Consensus 789 -----------~~~~~~IiV~Tpe~l~~l~~~----~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l----- 848 (1034)
..-++|||||+|=-|...+.. .....+++.+.++|+|.||.+.-+....+..++..+...
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~ 196 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSH 196 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCC
Confidence 023689999999777555542 234567899999999999998764445555555544322
Q ss_pred ------------hhccCCCeEEEEEccCCCC-HHHHHhH-hcccCCceeecCCCC--------cccccEEEEecCCCCCC
Q psy13788 849 ------------SSYTKRNVRLVGLSTALAN-AKDLATW-LNITKQGMYNFRPSV--------RPVPLEVHISGFPGKQY 906 (1034)
Q Consensus 849 ------------~~~~~~~~~iv~lSATl~~-~~~l~~~-l~~~~~~~~~~~~~~--------r~~~l~~~~~~~~~~~~ 906 (1034)
..+...-.|.|++|+.... ...+-.. .. ...+...+.+.. -.+++...+..++....
T Consensus 197 ~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~-N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 197 DTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQ-NYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCc-CccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 1111223789999987643 1222211 11 111111111111 12234444444443322
Q ss_pred ch----hhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHH
Q psy13788 907 CP----RMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKL 982 (1034)
Q Consensus 907 ~~----~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~ 982 (1034)
.. +..-..+.++-.+......+.+|||++|=-+=..+-+.|. .++
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk----~~~--------------------------- 324 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLK----KEN--------------------------- 324 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHH----hcC---------------------------
Confidence 22 1222222333344423456789999999766554444443 221
Q ss_pred HhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEech
Q psy13788 983 TIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRS 1023 (1034)
Q Consensus 983 ~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~ 1023 (1034)
...+.+|.-.+..+-...-. . |.+|+.++|+.|.
T Consensus 325 ---~sF~~i~EYts~~~isRAR~--~--F~~G~~~iLL~TE 358 (442)
T PF06862_consen 325 ---ISFVQISEYTSNSDISRARS--Q--FFHGRKPILLYTE 358 (442)
T ss_pred ---CeEEEecccCCHHHHHHHHH--H--HHcCCceEEEEEh
Confidence 11455666677777655544 5 9999999999985
No 209
>KOG0389|consensus
Probab=97.77 E-value=0.00012 Score=85.57 Aligned_cols=232 Identities=20% Similarity=0.236 Sum_probs=130.5
Q ss_pred CChhHHHHH---HHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh-CCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 699 FNPIQTQIF---HCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-CPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 699 ~~~~Q~~ai---~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~-~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
+.++|.--+ ..+++.+-+.|+.-.-|-|||.-.+. .+..+.+ +..+.=|||||.-.| +-|.+++.+.+. .+
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIa-FlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCP---sl 474 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIA-FLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCP---SL 474 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHHHH-HHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCC---ce
Confidence 556776544 45566777899999999999964322 2222322 335667899998665 556777765443 37
Q ss_pred eEEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhcccccccc--CcccEEEEecccccCCCChhHHHHHHHHH
Q psy13788 775 KVVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYV--QSVALIIIDEIHLLGEDRGPVLEVIVSRV 845 (1034)
Q Consensus 775 ~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l--~~l~~lViDEaH~l~~~~~~~~~~il~rl 845 (1034)
++..++|......+. ....+|+++|...+.. +...+.++ .+++++|+||+|.|.+.....|..+++
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~---~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~-- 549 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAAS---SKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMS-- 549 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccC---ChHHHHHHHhccccEEEecchhhhhccchHHHHHhcc--
Confidence 888899976443322 2378999999976521 10112222 567899999999998755555665542
Q ss_pred HHhhhccCCCeEEEEEccCC-CC-HHHHHhHhcccCCceeecCCCCcccccEEEEecCCC-----------CCCchhhhh
Q psy13788 846 NFISSYTKRNVRLVGLSTAL-AN-AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPG-----------KQYCPRMAK 912 (1034)
Q Consensus 846 ~~l~~~~~~~~~iv~lSATl-~~-~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~-----------~~~~~~~~~ 912 (1034)
.+.+.| +++|+|+ -| ..++...|..--+.+|.-... .+...+..... .....+...
T Consensus 550 ------I~An~R-lLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~----dl~~if~~k~~~d~d~e~~~l~qerIsrAK~ 618 (941)
T KOG0389|consen 550 ------INANFR-LLLTGTPLQNNLKELISLLAFVLPKVFDSSME----DLDVIFKAKKTSDGDIENALLSQERISRAKT 618 (941)
T ss_pred ------ccccce-EEeeCCcccccHHHHHHHHHHHhhHhhhccch----HHHHHHhccCCccchhhHHHHHHHHHHHHHH
Confidence 223444 5777774 33 455544443222222221111 11111110000 001122333
Q ss_pred ccHHH-H-----HHHHhhCCCCCeEEEecChHHHHHHHHHHHHHH
Q psy13788 913 MNKPI-Y-----TAIKQHSPEKPVMIFVSSRRQTRLTAIDLITIL 951 (1034)
Q Consensus 913 ~~~~~-~-----~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~ 951 (1034)
+-+|. + +.+....+..+-|.||.-.+.-+.++..+++..
T Consensus 619 im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~ 663 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELY 663 (941)
T ss_pred hhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHH
Confidence 33332 2 223344566678899988877777777777655
No 210
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.73 E-value=9.5e-05 Score=93.61 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=86.7
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccccc--CC
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAI--SS 792 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~--~~ 792 (1034)
+..+|.=-||||||++....+-..+.....+++++|+-+++|-.|..+.+.. ++....... -..+...-.+.+ ..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~-~~~~~~~~~--~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQS-FGKVAFNDP--KAESTSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHH-HHHhhhhcc--cccCHHHHHHHHhcCC
Confidence 4699999999999998766665555555679999999999999999998874 444222211 011111111111 23
Q ss_pred CcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 793 ASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 793 ~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
..|||||.++|............-.+=-.+|+||||+--. |. ...+++.. . ++...+|||+|+-.
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~--G~----~~~~~~~~---~-~~a~~~gFTGTPi~ 415 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY--GE----LAKLLKKA---L-KKAIFIGFTGTPIF 415 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc--cH----HHHHHHHH---h-ccceEEEeeCCccc
Confidence 5899999999966654321111122223689999999543 22 12222211 1 34778999999754
No 211
>KOG0392|consensus
Probab=97.72 E-value=0.00073 Score=82.52 Aligned_cols=152 Identities=17% Similarity=0.155 Sum_probs=92.2
Q ss_pred CCChhHHHHHHH--HhcC-CCcEEEEcCCCChhhHHHHHHHH-HHHHhC------CCCeEEEEcCcHHHHHHHHHHHHHH
Q psy13788 698 HFNPIQTQIFHC--LYHT-DNNVLLGAPTGSGKTIAAEITCF-RVFKQC------PEAKVVYIAPLKALVKERVADWKVK 767 (1034)
Q Consensus 698 ~~~~~Q~~ai~~--l~~~-~~~vll~apTGsGKT~~~~l~il-~~l~~~------~~~~~lvi~Pt~~L~~q~~~~~~~~ 767 (1034)
.+|.+|.+-++= .+++ +=+.|+|-.-|-|||+-..-.+. .+..+. .....|||||. .|+..|..+|.+.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 478899986642 2322 44899999999999975433222 222221 12348999997 7888888888765
Q ss_pred hhhhcCCeEEEEcCCCCcccc---ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHH
Q psy13788 768 FEARLKKKVVELTGDVTPDIQ---AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSR 844 (1034)
Q Consensus 768 ~~~~~~~~v~~~~g~~~~~~~---~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~r 844 (1034)
+.. +++..+.|.-..... ..++++|+|++++.+..=..... -....++|+||-|.+.+.... +...++.
T Consensus 1054 ~pf---L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~----~~~wNYcVLDEGHVikN~ktk-l~kavkq 1125 (1549)
T KOG0392|consen 1054 FPF---LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLI----KIDWNYCVLDEGHVIKNSKTK-LTKAVKQ 1125 (1549)
T ss_pred cch---hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHH----hcccceEEecCcceecchHHH-HHHHHHH
Confidence 543 667777775433222 24578999999998732111101 134568999999999864322 2222322
Q ss_pred HHHhhhccCCCeEEEEEccCCC
Q psy13788 845 VNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 845 l~~l~~~~~~~~~iv~lSATl~ 866 (1034)
++ .+. .+.+|+|+-
T Consensus 1126 L~-------a~h-RLILSGTPI 1139 (1549)
T KOG0392|consen 1126 LR-------ANH-RLILSGTPI 1139 (1549)
T ss_pred Hh-------hcc-eEEeeCCCc
Confidence 22 233 467777743
No 212
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.68 E-value=0.00027 Score=73.01 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=43.7
Q ss_pred CChhHHHHHHHHhcCCC-cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHH
Q psy13788 699 FNPIQTQIFHCLYHTDN-NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKER 760 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~-~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~ 760 (1034)
+++-|.+|+..++.+++ -.++.+|.|+|||.+. ..+...+... +.++++++||...+.+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~-g~~v~~~apT~~Aa~~L 62 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA-GKRVIGLAPTNKAAKEL 62 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT-T--EEEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC-CCeEEEECCcHHHHHHH
Confidence 78899999999975554 4778899999999853 3345555543 68999999999877763
No 213
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.62 E-value=0.00011 Score=91.45 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=36.3
Q ss_pred cccccEEEEeeeecccCCCCchHHHHHHhhhhccc----cceeecccc
Q psy13788 5 TELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIG----QEVFKGVKS 48 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d~RG~~le~li~~~~~~~~----~~~~~~~~~ 48 (1034)
.+++++||+||+|.-..-=|.-+-.++-|+++... .+|+|..|+
T Consensus 193 ~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SA 240 (851)
T COG1205 193 LRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSA 240 (851)
T ss_pred HhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEec
Confidence 46799999999999976778888889988876654 589998876
No 214
>KOG0326|consensus
Probab=97.51 E-value=0.00082 Score=70.57 Aligned_cols=180 Identities=21% Similarity=0.251 Sum_probs=99.4
Q ss_pred ccccccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccch--hhhhhHH----------------------
Q psy13788 2 VALTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSL--NRIQSLV---------------------- 56 (1034)
Q Consensus 2 ~~~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~--~~~~~~~---------------------- 56 (1034)
++-+++..++|+||..-|-+ +=++.+|.+|..+ +.. .|++-.|++ ..+.++.
T Consensus 222 Va~ls~c~~lV~DEADKlLs~~F~~~~e~li~~l-P~~--rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~Gvt 298 (459)
T KOG0326|consen 222 VADLSDCVILVMDEADKLLSVDFQPIVEKLISFL-PKE--RQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVT 298 (459)
T ss_pred cccchhceEEEechhhhhhchhhhhHHHHHHHhC-Ccc--ceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchh
Confidence 45568899999999999999 9999999999884 333 334433331 1111111
Q ss_pred --------------Hhhccc--cCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhH-HHHHH
Q psy13788 57 --------------YDTAYH--TNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGIL-DVLQI 118 (1034)
Q Consensus 57 --------------~~~~~~--~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~-~~~~~ 118 (1034)
+.+.|. .-.+.+|||.. ...+...++.+. .-|+ .+ |.||.|. +-...
T Consensus 299 QyYafV~e~qKvhCLntLfskLqINQsIIFCNS-----~~rVELLAkKIT---elGy-------scyyiHakM~Q~hRNr 363 (459)
T KOG0326|consen 299 QYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS-----TNRVELLAKKIT---ELGY-------SCYYIHAKMAQEHRNR 363 (459)
T ss_pred hheeeechhhhhhhHHHHHHHhcccceEEEecc-----chHhHHHHHHHH---hccc-------hhhHHHHHHHHhhhhh
Confidence 111111 12245555543 111112222221 1122 24 7799998 33344
Q ss_pred hhhcCCCcc-----ccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccce
Q psy13788 119 FGRAGRPQY-----NTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGH 192 (1034)
Q Consensus 119 ~~~~~~~~~-----~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~ 192 (1034)
..+.++.+. ||..+.+ ||+.+| -|||- ||-. =+...|+.++||+||-|- .|.
T Consensus 364 VFHdFr~G~crnLVctDL~TR----------GIDiqavNvVIN----FDfp------k~aEtYLHRIGRsGRFGh--lGl 421 (459)
T KOG0326|consen 364 VFHDFRNGKCRNLVCTDLFTR----------GIDIQAVNVVIN----FDFP------KNAETYLHRIGRSGRFGH--LGL 421 (459)
T ss_pred hhhhhhccccceeeehhhhhc----------ccccceeeEEEe----cCCC------CCHHHHHHHccCCccCCC--cce
Confidence 444454444 5444444 788888 57774 5521 224789999999999876 677
Q ss_pred EEEE-CCcccHHHH--HHHh-cCCcceeccccc
Q psy13788 193 ATII-TPHEKLNHY--LSLL-TNQIPIESNFVA 221 (1034)
Q Consensus 193 ~~i~-~~~~~~~~y--~~~~-~~~~~i~s~l~~ 221 (1034)
||=+ |..+...-| ..-| .+-.||-|.+..
T Consensus 422 AInLityedrf~L~~IE~eLGtEI~pip~~iDk 454 (459)
T KOG0326|consen 422 AINLITYEDRFNLYRIEQELGTEIKPIPSNIDK 454 (459)
T ss_pred EEEEEehhhhhhHHHHHHHhccccccCCCcCCc
Confidence 7744 444432223 2333 344566655544
No 215
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.49 E-value=0.00066 Score=82.63 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=54.7
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKV 766 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~ 766 (1034)
.+++.|.+|+..++.....++|.+|+|+|||.+..-.+.+.+.+ +.++++++||..-+++..+++.+
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~--g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR--GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEEcCcHHHHHHHHHHHHh
Confidence 48999999999887555789999999999998766555555544 56999999999998888777764
No 216
>PF13245 AAA_19: Part of AAA domain
Probab=97.43 E-value=0.00055 Score=58.46 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=41.7
Q ss_pred HHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh--CCCCeEEEEcCcHHHHHHHHHHH
Q psy13788 706 IFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ--CPEAKVVYIAPLKALVKERVADW 764 (1034)
Q Consensus 706 ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~--~~~~~~lvi~Pt~~L~~q~~~~~ 764 (1034)
|+...+..++-++|.+|.|||||....-.+...+.. .++.++++++|++..+++..+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 444333334446669999999997766666665532 23789999999999998876655
No 217
>PRK10536 hypothetical protein; Provisional
Probab=97.41 E-value=0.00038 Score=73.25 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=45.4
Q ss_pred CCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHH
Q psy13788 697 SHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L 756 (1034)
.-.+..|...+..+. ....+++.+|+|+|||+.+....++.+....-.++++.-|+.+.
T Consensus 58 ~p~n~~Q~~~l~al~-~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 58 LARNEAQAHYLKAIE-SKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred cCCCHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 336788999998886 56789999999999999988888876655445667777677543
No 218
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=97.40 E-value=0.00023 Score=61.40 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=29.2
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCC
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 186 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 186 (1034)
...+.+..++ -|||+|. .+||. |+ .+.++.+|.|++|||||.|
T Consensus 35 ~vli~t~~~~-~Gid~~~~~~vi~----~~------~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 35 RVLIATDILG-EGIDLPDASHVIF----YD------PPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SEEEESCGGT-TSSTSTTESEEEE----SS------SESSHHHHHHHHTTSSTTT
T ss_pred eEEEeecccc-ccccccccccccc----cc------cCCCHHHHHHHhhcCCCCC
Confidence 3444444444 3899996 44432 33 2567799999999999987
No 219
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.39 E-value=0.0028 Score=68.05 Aligned_cols=160 Identities=18% Similarity=0.115 Sum_probs=95.6
Q ss_pred CChhHHHHHHHH-------hcC--CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 699 FNPIQTQIFHCL-------YHT--DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 699 ~~~~Q~~ai~~l-------~~~--~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
++..|.+++--. +.. +.-.++.-.||.||--...-.|+..+.+. ..+.|++..+..|..+..++|+. ++
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-r~r~vwvS~s~dL~~Da~RDl~D-IG 115 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-RKRAVWVSVSNDLKYDAERDLRD-IG 115 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-CCceEEEECChhhhhHHHHHHHH-hC
Confidence 667788876322 212 33588899999999876666677776663 45799999999999998898885 32
Q ss_pred hhcCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhcc-cccccc---------CcccEEEEecccccCCCCh----
Q psy13788 770 ARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSW-QNRNYV---------QSVALIIIDEIHLLGEDRG---- 835 (1034)
Q Consensus 770 ~~~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~-~~~~~l---------~~l~~lViDEaH~l~~~~~---- 835 (1034)
. ..+.+..+.. ........-...|+.+|...+..-.+.. .....+ ..=.+||+||||...+..+
T Consensus 116 ~-~~i~v~~l~~-~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~ 193 (303)
T PF13872_consen 116 A-DNIPVHPLNK-FKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKK 193 (303)
T ss_pred C-Ccccceechh-hccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCcc
Confidence 2 1233332222 1111111124579999999885543210 011111 1224899999999876211
Q ss_pred -hHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 836 -PVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 836 -~~~~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
......+..++ ..+ ++.|+|.+|||-.
T Consensus 194 ~sk~g~avl~LQ---~~L-P~ARvvY~SATga 221 (303)
T PF13872_consen 194 PSKTGIAVLELQ---NRL-PNARVVYASATGA 221 (303)
T ss_pred ccHHHHHHHHHH---HhC-CCCcEEEeccccc
Confidence 22222222232 223 5678999999964
No 220
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=97.36 E-value=0.00014 Score=62.83 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=40.4
Q ss_pred hhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 985 AFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 985 ~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+..+..+||+++..+|+.+.+ . |++|..+|||||+++++|+ |+.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~--~--f~~~~~~vli~t~~~~~Gi-d~~ 50 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILK--K--FNSGEIRVLIATDILGEGI-DLP 50 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHH--H--HHTTSSSEEEESCGGTTSS-TST
T ss_pred CCcEEEEECCCCHHHHHHHHH--H--hhccCceEEEeeccccccc-ccc
Confidence 456899999999999999977 6 9999999999999999999 984
No 221
>KOG0924|consensus
Probab=97.33 E-value=0.027 Score=65.28 Aligned_cols=165 Identities=22% Similarity=0.284 Sum_probs=103.9
Q ss_pred eeecCCCC----eeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH-HhcCCcceecccccchHHHHhhhhh
Q psy13788 158 EMYNAKHG----CYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS-LLTNQIPIESNFVANLADNLNAEVA 232 (1034)
Q Consensus 158 ~~~~~~~~----~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~-~~~~~~~i~s~l~~~~~~~ln~e~~ 232 (1034)
++||++.| ...+||...--|+.|||||.| -|.++=+-..+ .|.+ ++..+.| ||
T Consensus 654 kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYTe~---ay~~eml~stvP---------------EI- 711 (1042)
T KOG0924|consen 654 KVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYTED---AYKNEMLPSTVP---------------EI- 711 (1042)
T ss_pred eecccccccceeEEEechhccchhhccccCCCC---Ccceeeehhhh---HHHhhcccCCCc---------------hh-
Confidence 67898887 235688888899999999964 58887666553 4543 3333343 44
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHH
Q psy13788 233 LGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHR 312 (1034)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~ 312 (1034)
.| -++.+-+|-+-++|. +|+.+ |-|. +.| .
T Consensus 712 ----------qR---------TNl~nvVLlLkslgV----~dll~-----FdFm-----------------D~P-----p 741 (1042)
T KOG0924|consen 712 ----------QR---------TNLSNVVLLLKSLGV----DDLLK-----FDFM-----------------DPP-----P 741 (1042)
T ss_pred ----------hh---------cchhhHHHHHHhcCh----hhhhC-----CCcC-----------------CCC-----H
Confidence 01 112233444445544 34332 2222 011 1
Q ss_pred HHHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhh
Q psy13788 313 TTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEE 392 (1034)
Q Consensus 313 ~~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E 392 (1034)
.+.+.+++-.|-..|-|. +.=.+|++|+-|+.|-|+|.-++.+.-.-.-.. ..++|.++++.. -..+..|+.|
T Consensus 742 ed~~~~sly~Lw~LGAl~-----~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc-~dEilsIvSmLS-vp~VF~rpke 814 (1042)
T KOG0924|consen 742 EDNLLNSLYQLWTLGALD-----NTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGC-SDEILSIVSMLS-VPAVFYRPKE 814 (1042)
T ss_pred HHHHHHHHHHHHHhhccc-----cCCccchhhHHhhhCCCCchHHHHHHHHhccCc-HHHHHHHHHHhc-ccceeecccc
Confidence 345667888888888883 345789999999999999999988876543332 356677766533 3567778877
Q ss_pred hHHHHHHhh
Q psy13788 393 LHELDNLTQ 401 (1034)
Q Consensus 393 ~~~l~~l~~ 401 (1034)
+.+-..+..
T Consensus 815 r~eead~ar 823 (1042)
T KOG0924|consen 815 REEEADAAR 823 (1042)
T ss_pred chhhhhhHH
Confidence 776655543
No 222
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0024 Score=75.06 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=61.2
Q ss_pred eecchhHHH-HHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCC
Q psy13788 107 YVHIGILDV-LQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGR 184 (1034)
Q Consensus 107 ~~h~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR 184 (1034)
+.|+||.+. .+...+.+. +..+...++|--|.| |||=|- +-|| .|| -+-++..|-|=+|||||
T Consensus 259 ~YHaGl~~~eR~~~q~~f~----~~~~~iiVAT~AFGM-GIdKpdVRfVi----H~~------lP~s~EsYyQE~GRAGR 323 (590)
T COG0514 259 AYHAGLSNEERERVQQAFL----NDEIKVMVATNAFGM-GIDKPDVRFVI----HYD------LPGSIESYYQETGRAGR 323 (590)
T ss_pred EecCCCCHHHHHHHHHHHh----cCCCcEEEEeccccC-ccCCCCceEEE----Eec------CCCCHHHHHHHHhhccC
Confidence 558888733 333344433 336677778888888 899994 5444 465 45567999999999999
Q ss_pred CCccccceEEEECCcccHHHHHHHhcCCcc
Q psy13788 185 PQYNTSGHATIITPHEKLNHYLSLLTNQIP 214 (1034)
Q Consensus 185 ~~~d~~G~~~i~~~~~~~~~y~~~~~~~~~ 214 (1034)
=|. ..+|+++-.+.+..--..++..+.|
T Consensus 324 DG~--~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 324 DGL--PAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred CCC--cceEEEeeccccHHHHHHHHHhhcc
Confidence 877 6789999887654433333344444
No 223
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=97.15 E-value=0.0011 Score=63.36 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=35.3
Q ss_pred ccccccchhhhccCcccc-e-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEE
Q psy13788 132 LGRTASNYYIKHNDIELF-T-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATII 196 (1034)
Q Consensus 132 l~~~~~~~~~~~~gvn~p-a-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~ 196 (1034)
....+.+..+. .|+|+| + .||+- + .+.+..++.||+|||||.|- .|.++++
T Consensus 79 ~~ili~t~~~~-~G~d~~~~~~vi~~-----~------~~~~~~~~~Q~~GR~~R~~~--~~~~~~~ 131 (131)
T cd00079 79 IVVLVATDVIA-RGIDLPNVSVVINY-----D------LPWSPSSYLQRIGRAGRAGQ--KGTAILL 131 (131)
T ss_pred CcEEEEcChhh-cCcChhhCCEEEEe-----C------CCCCHHHheecccccccCCC--CceEEeC
Confidence 34555555555 489999 4 45543 2 25567899999999999995 6777653
No 224
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.11 E-value=0.0014 Score=74.57 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=60.9
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcE
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASV 795 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~I 795 (1034)
-++|.+..|||||+++.-.+........+.+++++++..+|.......+.+.... .....
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~--------------------~~~~~ 62 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP--------------------KLKKS 62 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc--------------------chhhh
Confidence 4789999999999987766555523345789999999999988766655432200 01122
Q ss_pred EEECHhhHHHHHhccccccccCcccEEEEecccccCC
Q psy13788 796 IVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832 (1034)
Q Consensus 796 iV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~ 832 (1034)
.+..|..+..-.. .........++|||||||.+..
T Consensus 63 ~~~~~~~~i~~~~--~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 63 DFRKPTSFINNYS--ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhHHHHhhcc--cccccCCcCCEEEEehhHhhhh
Confidence 2333333321111 1233457889999999999976
No 225
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.07 E-value=0.0048 Score=74.16 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=78.0
Q ss_pred hhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC---CCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---EAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 701 ~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~---~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
+.|+.|+...+ .++-.++.++.|+|||++..-.+.......+ +.++++.+||---+....+........ ++..
T Consensus 148 ~~Qk~A~~~al-~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~-l~~~-- 223 (586)
T TIGR01447 148 NWQKVAVALAL-KSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKN-LAAA-- 223 (586)
T ss_pred HHHHHHHHHHh-hCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcc-cccc--
Confidence 68999999887 6778999999999999864332222222111 268999999987766544444332211 1100
Q ss_pred EEcCCCCccccccCCCcEEEECHhhHHHHHhc----cccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccC
Q psy13788 778 ELTGDVTPDIQAISSASVIVTTPEKWDGVSRS----WQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTK 853 (1034)
Q Consensus 778 ~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~----~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~ 853 (1034)
.. ......+-..|..++...... .........+++||||||-++.. +.+..++. ..+
T Consensus 224 -------~~--~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~---~l~~~ll~-------al~ 284 (586)
T TIGR01447 224 -------EA--LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL---PLMAKLLK-------ALP 284 (586)
T ss_pred -------hh--hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH---HHHHHHHH-------hcC
Confidence 00 000111223444444222110 01112234679999999999863 33344443 345
Q ss_pred CCeEEEEEccC
Q psy13788 854 RNVRLVGLSTA 864 (1034)
Q Consensus 854 ~~~~iv~lSAT 864 (1034)
...|+|++.=.
T Consensus 285 ~~~rlIlvGD~ 295 (586)
T TIGR01447 285 PNTKLILLGDK 295 (586)
T ss_pred CCCEEEEECCh
Confidence 67788877543
No 226
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.06 E-value=0.0053 Score=74.52 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=26.4
Q ss_pred cCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCcccc
Q psy13788 144 NDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTS 190 (1034)
Q Consensus 144 ~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~ 190 (1034)
-|||+|. .|+|- +++..| +..+|.|++||.+||+-+..
T Consensus 554 eGIDlP~a~vvI~----~s~~~g-----S~~q~iQRlGRilR~~~~~~ 592 (732)
T TIGR00603 554 TSIDLPEANVLIQ----ISSHYG-----SRRQEAQRLGRILRAKKGSD 592 (732)
T ss_pred cccCCCCCCEEEE----eCCCCC-----CHHHHHHHhcccccCCCCCc
Confidence 4899994 55542 332212 45799999999999986544
No 227
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.03 E-value=0.0024 Score=78.38 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=35.9
Q ss_pred cccccchhhhccCcccceEEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEEC
Q psy13788 133 GRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIIT 197 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~ 197 (1034)
...++|..++ .||+++..++|. + ..+...|.|++||.||.|-...+...+++
T Consensus 338 ~ILVATdVae-rGLDId~d~VI~----d--------~aP~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 338 VYLVCTSAGE-VGVNISADHLVC----D--------LAPFESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred eEEeccchhh-hcccCCcceEEE----C--------CCCHHHHHHHhcccCCCCCCCCceEEEEe
Confidence 3455665555 489999865553 1 12357999999999999886666555553
No 228
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.01 E-value=0.0029 Score=75.19 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=82.0
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHH---HHHHHHHh-hhhc-CCeEEEEcCC---CCcc
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKER---VADWKVKF-EARL-KKKVVELTGD---VTPD 786 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~---~~~~~~~~-~~~~-~~~v~~~~g~---~~~~ 786 (1034)
-|+=|.+.||+|||.||+-.|+..-++..-.+.+++||+.|.-.-+ .....+.| +... +.+...+.-+ ....
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~ 154 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFK 154 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHh
Confidence 4688999999999999999999887777778999999999986543 23333344 2221 2333333222 1111
Q ss_pred ccccCCCcEEEECHhhHHHH------Hhcc----cc-----ccccCcc----cEEEEecccccCCCChhHHHHHHHHHHH
Q psy13788 787 IQAISSASVIVTTPEKWDGV------SRSW----QN-----RNYVQSV----ALIIIDEIHLLGEDRGPVLEVIVSRVNF 847 (1034)
Q Consensus 787 ~~~~~~~~IiV~Tpe~l~~l------~~~~----~~-----~~~l~~l----~~lViDEaH~l~~~~~~~~~~il~rl~~ 847 (1034)
......+.+++.|...+..- +.+. .+ ...++.+ -.+|+||-|.+..+ ...+..+- ++
T Consensus 155 ~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~~~~i~-~l-- 230 (985)
T COG3587 155 FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKTYGAIK-QL-- 230 (985)
T ss_pred hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hHHHHHHH-hh--
Confidence 11223567777776655221 1100 00 0011111 26999999999753 22232222 11
Q ss_pred hhhccCCCeEEEEEccCCCC
Q psy13788 848 ISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 848 l~~~~~~~~~iv~lSATl~~ 867 (1034)
.+.-++=++||.++
T Consensus 231 ------~pl~ilRfgATfkd 244 (985)
T COG3587 231 ------NPLLILRFGATFKD 244 (985)
T ss_pred ------CceEEEEecccchh
Confidence 24446778999876
No 229
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.95 E-value=0.0027 Score=60.89 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFR 737 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~ 737 (1034)
+++.+++.+|+|+|||.+....+-.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999876555443
No 230
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.83 E-value=0.0079 Score=72.52 Aligned_cols=142 Identities=12% Similarity=0.127 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHH--HHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEIT--CFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 700 ~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~--il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
.++|+.|+...+ ..+-.+|.+++|+|||++..-. .+......+..++++++||.--+....+........ ++.
T Consensus 154 ~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~-~~~--- 228 (615)
T PRK10875 154 VDWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQ-LPL--- 228 (615)
T ss_pred CHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhc-ccc---
Confidence 479999998877 6778999999999999764332 222222223467889999988776655544332221 111
Q ss_pred EEcCCCCccccccCCCcEEEECHhhHHHHHhcc----ccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccC
Q psy13788 778 ELTGDVTPDIQAISSASVIVTTPEKWDGVSRSW----QNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTK 853 (1034)
Q Consensus 778 ~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~----~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~ 853 (1034)
. ... ......-..|..++....... .........+++||||+-++.- +.+..++ ...+
T Consensus 229 --~----~~~--~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~---~lm~~ll-------~al~ 290 (615)
T PRK10875 229 --T----DEQ--KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDL---PMMARLI-------DALP 290 (615)
T ss_pred --c----hhh--hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccH---HHHHHHH-------Hhcc
Confidence 0 000 000111123444442221100 1112234568999999999862 3333333 3445
Q ss_pred CCeEEEEEccC
Q psy13788 854 RNVRLVGLSTA 864 (1034)
Q Consensus 854 ~~~~iv~lSAT 864 (1034)
+..|+|++.=.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 67888888543
No 231
>KOG1803|consensus
Probab=96.82 E-value=0.0023 Score=73.45 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=56.7
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHH
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWK 765 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~ 765 (1034)
.+++-|.+|+....+...-.++.+|+|+|||.+-...+.+.+.+ +.++|+++||..-++-+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--CCeEEEEcCchHHHHHHHHHhc
Confidence 38899999999888555668899999999999888888888877 7999999999999888877643
No 232
>KOG2340|consensus
Probab=96.80 E-value=0.0061 Score=68.58 Aligned_cols=148 Identities=14% Similarity=0.233 Sum_probs=92.0
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEc-CCCChh--hHHHHHHHHHHHHhC-----------------------------CCC
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGA-PTGSGK--TIAAEITCFRVFKQC-----------------------------PEA 745 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~a-pTGsGK--T~~~~l~il~~l~~~-----------------------------~~~ 745 (1034)
.+++.|.+.+.... +-+|++-.- .-+.|+ +-+|.+-+++++.+. ..+
T Consensus 216 pltalQ~~L~~~m~-~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 216 PLTALQKELFKIMF-NYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred cchHHHHHHHHHHH-hhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 48999999888665 667766432 224555 566777777766321 138
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhh-hhcCCe--------EEEEcCCC---------------------Ccccc-------
Q psy13788 746 KVVYIAPLKALVKERVADWKVKFE-ARLKKK--------VVELTGDV---------------------TPDIQ------- 788 (1034)
Q Consensus 746 ~~lvi~Pt~~L~~q~~~~~~~~~~-~~~~~~--------v~~~~g~~---------------------~~~~~------- 788 (1034)
+|||+||+|+-|-.+++.+...+. ..-+.. -..+.|+. ....+
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 999999999999998888876632 211111 01122211 00000
Q ss_pred -------ccCCCcEEEECHhhHHHHHhcc----ccccccCcccEEEEecccccCCCChhHHHHHHHHHH
Q psy13788 789 -------AISSASVIVTTPEKWDGVSRSW----QNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVN 846 (1034)
Q Consensus 789 -------~~~~~~IiV~Tpe~l~~l~~~~----~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~ 846 (1034)
.+..+||+||+|=-+..++.+. +...++..+.++|||-||.+..+....+..++..|.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn 443 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLN 443 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhh
Confidence 0236899999997775555421 234567899999999999988644444455554443
No 233
>KOG0920|consensus
Probab=96.78 E-value=0.022 Score=70.11 Aligned_cols=143 Identities=19% Similarity=0.211 Sum_probs=87.0
Q ss_pred cCcccce--EEEecCc---eeecCCCCe----eeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHhc-CCc
Q psy13788 144 NDIELFT--EHMTKGT---EMYNAKHGC----YVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLT-NQI 213 (1034)
Q Consensus 144 ~gvn~pa--~vii~~~---~~~~~~~~~----~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~-~~~ 213 (1034)
..|-.|. -||=.|- ..||+..+. -.|+|-..-+|+.|||||- -.|.++=+-... +|..++. -+.
T Consensus 482 TSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~~---~~~~~~~~~q~ 555 (924)
T KOG0920|consen 482 TSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTRS---RYEKLMLAYQL 555 (924)
T ss_pred hcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeechh---hhhhcccccCC
Confidence 4566664 3554444 568887642 3689999999999999996 468888665553 5655443 333
Q ss_pred ceecccccchHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCcc
Q psy13788 214 PIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPR 293 (1034)
Q Consensus 214 ~i~s~l~~~~~~~ln~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~ 293 (1034)
| || +| .-+....|.+-++ ...++.+||.. +..-|
T Consensus 556 P---------------Ei-----------lR---------~pL~~l~L~iK~l----~~~~~~~fLsk------aldpP- 589 (924)
T KOG0920|consen 556 P---------------EI-----------LR---------TPLEELCLHIKVL----EQGSIKAFLSK------ALDPP- 589 (924)
T ss_pred h---------------HH-----------Hh---------ChHHHhhheeeec----cCCCHHHHHHH------hcCCC-
Confidence 3 33 11 0011222222222 22222244431 11111
Q ss_pred ccCCCccccCCChhHHHHHHHHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHH
Q psy13788 294 EYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFT 361 (1034)
Q Consensus 294 ~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~ 361 (1034)
. .+.+..|+..|.+-|-+..++ .+|+||+.+|.+-+++.--+.+.
T Consensus 590 -------------~-----~~~v~~a~~~L~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll 634 (924)
T KOG0920|consen 590 -------------P-----ADAVDLAIERLKQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLL 634 (924)
T ss_pred -------------C-----hHHHHHHHHHHHHhccccCcc-----cchHHHHHHHhCCCccccchhhe
Confidence 1 245789999999999996542 99999999999999987666554
No 234
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=96.78 E-value=0.005 Score=70.08 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=29.1
Q ss_pred cccccEEEEeeeecccCCCCchHHHHHH--hhhh-ccccceeecccchhh
Q psy13788 5 TELVKLLIIDEVHLLHGDRGPVIEALVA--RTLR-QIGQEVFKGVKSLNR 51 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d~RG~~le~li~--~~~~-~~~~~~~~~~~~~~~ 51 (1034)
...+++|||||+|.++...+..+...+. ++++ .....+++++|++.+
T Consensus 143 ~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~ 192 (357)
T TIGR03158 143 YTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPD 192 (357)
T ss_pred hcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCC
Confidence 5789999999999998744443332111 1111 122468888888643
No 235
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.76 E-value=0.018 Score=61.72 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=50.7
Q ss_pred ccceecchhH---HHHHHhhhcC-CCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHH
Q psy13788 104 HGCYVHIGIL---DVLQIFGRAG-RPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQI 178 (1034)
Q Consensus 104 ~g~~~h~~~~---~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm 178 (1034)
+.+++|+.-- |-.+.|..+. ...+.|+-|++ ||.+|- .|.+.|.. .+-++-+-..||
T Consensus 333 ~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTTILER----------GVTfp~vdV~Vlgae--------h~vfTesaLVQI 394 (441)
T COG4098 333 TIASVHSEDQHRKEKVEAFRDGKITLLITTTILER----------GVTFPNVDVFVLGAE--------HRVFTESALVQI 394 (441)
T ss_pred ceeeeeccCccHHHHHHHHHcCceEEEEEeehhhc----------ccccccceEEEecCC--------cccccHHHHHHH
Confidence 3457887543 4445554432 22234444444 899997 55544432 145677899999
Q ss_pred hhccCCCCccccceEEEECCc
Q psy13788 179 FGRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 179 ~GRAGR~~~d~~G~~~i~~~~ 199 (1034)
+||+||.--...|.++.+-..
T Consensus 395 aGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 395 AGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred hhhccCCCcCCCCcEEEEecc
Confidence 999999777778998888766
No 236
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.75 E-value=0.0039 Score=69.80 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=74.7
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--PEAKVVYIAPLKALVKERVADWKVKFEARLKKKV 776 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~--~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v 776 (1034)
+++-|.+++.. ..++++|.|+.|||||.+...-+...+... +..++|++++|++.+.+...++...++.......
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~ 77 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESS 77 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCT
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccccc
Confidence 46789998876 467899999999999998877777776654 5688999999999999988888876654200000
Q ss_pred EEEcCCCCccccccCCCcEEEECHhhH-HHHHhccccccccCcccEEEEeccc
Q psy13788 777 VELTGDVTPDIQAISSASVIVTTPEKW-DGVSRSWQNRNYVQSVALIIIDEIH 828 (1034)
Q Consensus 777 ~~~~g~~~~~~~~~~~~~IiV~Tpe~l-~~l~~~~~~~~~l~~l~~lViDEaH 828 (1034)
.+............+.|+|...+ ..+++....... -.-.+-++|+..
T Consensus 78 ----~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~-~~~~~~i~~~~~ 125 (315)
T PF00580_consen 78 ----DNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIG-IDPNFEILDEEE 125 (315)
T ss_dssp ----T-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT-SHTTTEEECHHH
T ss_pred ----ccccccccccccchheeehhhhhhhhhhhhhhhhhh-ccccceeecchh
Confidence 00000000112356788898877 334442211111 123455666665
No 237
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.75 E-value=0.011 Score=73.14 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=44.2
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC-CCeEEEEcCcHHHHHH
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP-EAKVVYIAPLKALVKE 759 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~-~~~~lvi~Pt~~L~~q 759 (1034)
+++-|.+|+..+. .++-+++.++.|+|||++.- .++..+.... ...+++++||-.-+..
T Consensus 324 l~~~Q~~Ai~~~~-~~~~~iitGgpGTGKTt~l~-~i~~~~~~~~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 324 LSEEQKQALDTAI-QHKVVILTGGPGTGKTTITR-AIIELAEELGGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred CCHHHHHHHHHHH-hCCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCceEEEEeCchHHHHH
Confidence 8899999999887 66789999999999998543 3334444321 2678889999876653
No 238
>KOG0330|consensus
Probab=96.72 E-value=0.003 Score=68.50 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=40.8
Q ss_pred cCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 144 NDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 144 ~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
-|.+.|. .|||- || -+....||..++||-||.| ..|.+|-+.+.-+.+-|.+
T Consensus 362 RGLDip~Vd~VVN----yD------iP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve~~qr 414 (476)
T KOG0330|consen 362 RGLDIPHVDVVVN----YD------IPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVELVQR 414 (476)
T ss_pred ccCCCCCceEEEe----cC------CCCcHHHHHHHcccccccC--CCcceEEEEehhhhHHHHH
Confidence 3788886 67764 66 4555689999999999999 6999999888866666654
No 239
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.70 E-value=0.0073 Score=65.49 Aligned_cols=67 Identities=21% Similarity=0.264 Sum_probs=49.5
Q ss_pred cccccCCCChhHHHHHHHHhcCCCc-EEEEcCCCChhhHHHHHHHHHHH-HhCCCCeEEEEcCcHHHHH
Q psy13788 692 SLYKFSHFNPIQTQIFHCLYHTDNN-VLLGAPTGSGKTIAAEITCFRVF-KQCPEAKVVYIAPLKALVK 758 (1034)
Q Consensus 692 ~~~~~~~~~~~Q~~ai~~l~~~~~~-vll~apTGsGKT~~~~l~il~~l-~~~~~~~~lvi~Pt~~L~~ 758 (1034)
..+|..--+..|.-|+..+++.+-+ |.+.++.|||||+.++.+.+... .+....++++-=|+..+-+
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE 290 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc
Confidence 4567665677899999999854433 77899999999999988776554 4444577888888876653
No 240
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0066 Score=72.41 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=34.6
Q ss_pred Ccccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcc
Q psy13788 145 DIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE 200 (1034)
Q Consensus 145 gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~ 200 (1034)
|++.|. ..|| -|| -+.++.+|.+++||+||.| ..|.++.++.+.
T Consensus 336 GiDi~~v~~Vi----nyD------~p~~~e~yvHRiGRTgRaG--~~G~ai~fv~~~ 380 (513)
T COG0513 336 GLDIPDVSHVI----NYD------LPLDPEDYVHRIGRTGRAG--RKGVAISFVTEE 380 (513)
T ss_pred cCCccccceeE----Ecc------CCCCHHHheeccCccccCC--CCCeEEEEeCcH
Confidence 788886 4444 376 3456789999999999999 589999999874
No 241
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.65 E-value=0.0063 Score=71.54 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=38.7
Q ss_pred cccccchhhhccCcccc-eEEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCccc
Q psy13788 133 GRTASNYYIKHNDIELF-TEHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEK 201 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~p-a~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~ 201 (1034)
..+++|--+.+ |||+| |+|+| ++|++ -+..+..+|--||.||-+. ...|++++.+..
T Consensus 535 ~ILVaTTVIEV-GVdVPnATvMV----Ie~AE-----RFGLaQLHQLRGRVGRG~~--qSyC~Ll~~~~~ 592 (677)
T COG1200 535 DILVATTVIEV-GVDVPNATVMV----IENAE-----RFGLAQLHQLRGRVGRGDL--QSYCVLLYKPPL 592 (677)
T ss_pred cEEEEeeEEEe-cccCCCCeEEE----Eechh-----hhhHHHHHHhccccCCCCc--ceEEEEEeCCCC
Confidence 33334444443 89999 56543 24443 2446999999999999654 789999998753
No 242
>KOG0343|consensus
Probab=96.63 E-value=0.0068 Score=68.54 Aligned_cols=179 Identities=16% Similarity=0.256 Sum_probs=96.3
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhhhhhHH--------Hhhccc------c--CCce
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLV--------YDTAYH------T--NENL 67 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~------~--~~~~ 67 (1034)
++++.++|+||..-+-| +=--+|+.+|.. ++...|.-.-+.+.+..++.+. |...+. | ..|.
T Consensus 213 t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~-lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~ 291 (758)
T KOG0343|consen 213 TSNLQMLVLDEADRMLDMGFKKTLNAIIEN-LPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQS 291 (758)
T ss_pred CCcceEEEeccHHHHHHHhHHHHHHHHHHh-CChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhhe
Confidence 36789999999999999 888899999988 4544443222222233333221 111110 1 1233
Q ss_pred EEeccCCcchhHHHHHHHHHHHHHHhhcc-c--------------cceeccccc--ee-cchhH-----HHHHHhhh-cC
Q psy13788 68 LICAPTGAGKTNVAMLTIAHQIKQHISQG-T--------------EMYNAKHGC--YV-HIGIL-----DVLQIFGR-AG 123 (1034)
Q Consensus 68 ~v~~~~~~~k~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~g~--~~-h~~~~-----~~~~~~~~-~~ 123 (1034)
++.+|.+ .|..... . -+..|+... . .+...+-|+ ++ |-++. ++...|-+ ..
T Consensus 292 y~~v~l~-~Ki~~L~-s---FI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~ 366 (758)
T KOG0343|consen 292 YVIVPLE-DKIDMLW-S---FIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRA 366 (758)
T ss_pred EEEEehh-hHHHHHH-H---HHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcc
Confidence 3333321 1111110 0 011111100 0 011122344 44 44444 44455533 33
Q ss_pred CCccccccccccccchhhhccCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCccc
Q psy13788 124 RPQYNTSDLGRTASNYYIKHNDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEK 201 (1034)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~ 201 (1034)
-+.|||.-.++ |+++|| +|| .+| .+=.+..|..++||.-| |++.|+++++..+..
T Consensus 367 ~vLF~TDv~aR----------GLDFpaVdwVi-----Q~D------CPedv~tYIHRvGRtAR--~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 367 VVLFCTDVAAR----------GLDFPAVDWVI-----QVD------CPEDVDTYIHRVGRTAR--YKERGESLLMLTPSE 423 (758)
T ss_pred eEEEeehhhhc----------cCCCcccceEE-----Eec------CchhHHHHHHHhhhhhc--ccCCCceEEEEcchh
Confidence 44556655444 899999 555 255 23345788888888877 678999999999988
Q ss_pred HHHHHHHhcCC
Q psy13788 202 LNHYLSLLTNQ 212 (1034)
Q Consensus 202 ~~~y~~~~~~~ 212 (1034)
.+..+..|...
T Consensus 424 eE~~l~~Lq~k 434 (758)
T KOG0343|consen 424 EEAMLKKLQKK 434 (758)
T ss_pred HHHHHHHHHHc
Confidence 77777766544
No 243
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.63 E-value=0.015 Score=73.39 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=76.1
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
+++-|.+|+..++.+.+-+++.++.|+|||++ +-++...+.. .+.+++.++||---+.. +. ...|+..
T Consensus 347 Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-~G~~V~~~ApTGkAA~~----L~----e~tGi~a-- 414 (988)
T PRK13889 347 LSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-AGYEVRGAALSGIAAEN----LE----GGSGIAS-- 414 (988)
T ss_pred CCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-cCCeEEEecCcHHHHHH----Hh----hccCcch--
Confidence 89999999999884455688999999999986 3344444443 47889999999765533 21 1122211
Q ss_pred EcCCCCccccccCCCcEEEECHhhHHHHHhccc-cccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeE
Q psy13788 779 LTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQ-NRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVR 857 (1034)
Q Consensus 779 ~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~-~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~ 857 (1034)
.|..+| +..|. ....+...++|||||+-++.. ..+..++... .....+
T Consensus 415 -------------------~TI~sl---l~~~~~~~~~l~~~~vlIVDEASMv~~---~~m~~LL~~a------~~~gar 463 (988)
T PRK13889 415 -------------------RTIASL---EHGWGQGRDLLTSRDVLVIDEAGMVGT---RQLERVLSHA------ADAGAK 463 (988)
T ss_pred -------------------hhHHHH---HhhhcccccccccCcEEEEECcccCCH---HHHHHHHHhh------hhCCCE
Confidence 133333 22221 233456778999999999874 3344444321 234677
Q ss_pred EEEEccC
Q psy13788 858 LVGLSTA 864 (1034)
Q Consensus 858 iv~lSAT 864 (1034)
+|++.=+
T Consensus 464 vVLVGD~ 470 (988)
T PRK13889 464 VVLVGDP 470 (988)
T ss_pred EEEECCH
Confidence 7777544
No 244
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=96.63 E-value=0.0013 Score=56.97 Aligned_cols=44 Identities=7% Similarity=0.151 Sum_probs=39.8
Q ss_pred hhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 985 AFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 985 ~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+.++..+||++++++|..+.+ . |++|...|||+|+++++|+ |+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~--~--f~~~~~~vli~t~~~~~Gi-~~~ 54 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILE--K--FNNGKIKVLVATDVAERGL-DLP 54 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHH--H--HHcCCCeEEEECChhhCCc-Chh
Confidence 345889999999999998877 7 9999999999999999999 975
No 245
>KOG0391|consensus
Probab=96.62 E-value=0.0074 Score=73.42 Aligned_cols=150 Identities=13% Similarity=0.131 Sum_probs=96.6
Q ss_pred CCChhHHHHH---HHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh--CCCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 698 HFNPIQTQIF---HCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ--CPEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 698 ~~~~~Q~~ai---~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~--~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
.++.+|..-+ -.+|+++-|.|+.-.-|-|||+--+ .++.++.. .+-+-=||||||--+.+ |..++++ ++ -
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtI-SllAhLACeegnWGPHLIVVpTsviLn-WEMElKR-wc--P 689 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTI-SLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKR-WC--P 689 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHH-HHHHHHHhcccCCCCceEEeechhhhh-hhHHHhh-hC--C
Confidence 4788998766 4567788899999999999996422 22333322 23366789999976654 4555553 33 3
Q ss_pred CCeEEEEcCCCCccccc---c---CCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHH
Q psy13788 773 KKKVVELTGDVTPDIQA---I---SSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVN 846 (1034)
Q Consensus 773 ~~~v~~~~g~~~~~~~~---~---~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~ 846 (1034)
|+++..+.|........ + +..+|.|+++..+..-...++ -++.+++|+||||.+.+-....|+.++.
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFk----rkrWqyLvLDEaqnIKnfksqrWQAlln--- 762 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFK----RKRWQYLVLDEAQNIKNFKSQRWQALLN--- 762 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHH----hhccceeehhhhhhhcchhHHHHHHHhc---
Confidence 68999999965433221 1 235888888877632222111 2456899999999998755667777663
Q ss_pred HhhhccCCCeEEEEEccCC
Q psy13788 847 FISSYTKRNVRLVGLSTAL 865 (1034)
Q Consensus 847 ~l~~~~~~~~~iv~lSATl 865 (1034)
.+ .-|.++|+.|.
T Consensus 763 -----fn-sqrRLLLtgTP 775 (1958)
T KOG0391|consen 763 -----FN-SQRRLLLTGTP 775 (1958)
T ss_pred -----cc-hhheeeecCCc
Confidence 11 23456777773
No 246
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.62 E-value=0.017 Score=68.62 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=38.4
Q ss_pred ccccchhhhccCcccce--EEEecCcee--ecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcc
Q psy13788 134 RTASNYYIKHNDIELFT--EHMTKGTEM--YNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE 200 (1034)
Q Consensus 134 ~~~~~~~~~~~gvn~pa--~vii~~~~~--~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~ 200 (1034)
..+.|..++ -|+++|. .|+|-+... +.|+-.. .+-....|.|++|||||.+ ..|+++|.|...
T Consensus 315 ILVgT~~i~-kG~d~~~v~lV~vl~aD~~l~~pd~ra-~E~~~~ll~q~~GRagR~~--~~g~viiqt~~p 381 (505)
T TIGR00595 315 ILIGTQMIA-KGHHFPNVTLVGVLDADSGLHSPDFRA-AERGFQLLTQVAGRAGRAE--DPGQVIIQTYNP 381 (505)
T ss_pred EEEeCcccc-cCCCCCcccEEEEEcCcccccCcccch-HHHHHHHHHHHHhccCCCC--CCCEEEEEeCCC
Confidence 344555555 4899995 566544322 1111000 1123467899999999964 479999998664
No 247
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.61 E-value=0.017 Score=71.87 Aligned_cols=122 Identities=11% Similarity=0.159 Sum_probs=74.0
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
+++-|.+|+..++.+++-++|.++.|+|||.+.-. +...+.. .+.++++++||---+.. +. ...|+...
T Consensus 353 Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~-~g~~V~~~ApTg~Aa~~----L~----~~~g~~a~- 421 (744)
T TIGR02768 353 LSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEA-AGYRVIGAALSGKAAEG----LQ----AESGIESR- 421 (744)
T ss_pred CCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHh-CCCeEEEEeCcHHHHHH----HH----hccCCcee-
Confidence 88999999999885456789999999999975333 3333333 47889999999765543 22 11222211
Q ss_pred EcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEE
Q psy13788 779 LTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRL 858 (1034)
Q Consensus 779 ~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~i 858 (1034)
|..++..-.. .....+...++||||||-++.. ..+..++... .....++
T Consensus 422 --------------------Ti~~~~~~~~--~~~~~~~~~~llIvDEasMv~~---~~~~~Ll~~~------~~~~~kl 470 (744)
T TIGR02768 422 --------------------TLASLEYAWA--NGRDLLSDKDVLVIDEAGMVGS---RQMARVLKEA------EEAGAKV 470 (744)
T ss_pred --------------------eHHHHHhhhc--cCcccCCCCcEEEEECcccCCH---HHHHHHHHHH------HhcCCEE
Confidence 3333311111 1223356789999999999874 2333343321 2245666
Q ss_pred EEEc
Q psy13788 859 VGLS 862 (1034)
Q Consensus 859 v~lS 862 (1034)
|++.
T Consensus 471 iLVG 474 (744)
T TIGR02768 471 VLVG 474 (744)
T ss_pred EEEC
Confidence 6665
No 248
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.052 Score=61.73 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHh--CCCCeEEEEc--CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQ--CPEAKVVYIA--PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA 789 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~--~~~~~~lvi~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 789 (1034)
+..+++.+|||+|||++..--+...... ..+.++.++. +.|.-+.++...+.+ .+|+.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~----~lgvpv~~----------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGD----IMGIPVKA----------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhh----cCCcceEe-----------
Confidence 3568899999999998765433332221 1244554444 555655554554433 34444321
Q ss_pred cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccC-CCeEEEEEccCCCCH
Q psy13788 790 ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTK-RNVRLVGLSTALANA 868 (1034)
Q Consensus 790 ~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~-~~~~iv~lSATl~~~ 868 (1034)
+-+++.+...+.. +.+.++|++|++.+...+. .. +.+++.+..... ..-.++.+|||...
T Consensus 239 -------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~~-~~----l~el~~~l~~~~~~~e~~LVlsat~~~- 299 (388)
T PRK12723 239 -------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKDF-MK----LAEMKELLNACGRDAEFHLAVSSTTKT- 299 (388)
T ss_pred -------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccCH-HH----HHHHHHHHHhcCCCCeEEEEEcCCCCH-
Confidence 1244555443331 3568999999999875321 11 233332223222 22467899999863
Q ss_pred HHHHh
Q psy13788 869 KDLAT 873 (1034)
Q Consensus 869 ~~l~~ 873 (1034)
.++.+
T Consensus 300 ~~~~~ 304 (388)
T PRK12723 300 SDVKE 304 (388)
T ss_pred HHHHH
Confidence 34433
No 249
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.55 E-value=0.004 Score=76.48 Aligned_cols=126 Identities=15% Similarity=0.102 Sum_probs=80.3
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
+.++|.-.-- +++.| -+..+.||=|||+++.+|+.-.... |..+-+|...--||.-=.+ |...+-..+|+++++
T Consensus 170 ~yDVQliGgi-vLh~G--~IAEM~TGEGKTLvAtlp~yLnAL~--GkgVHvVTVNDYLA~RDae-wmgply~fLGLsvg~ 243 (1112)
T PRK12901 170 HYDVQLIGGV-VLHQG--KIAEMATGEGKTLVATLPVYLNALT--GNGVHVVTVNDYLAKRDSE-WMGPLYEFHGLSVDC 243 (1112)
T ss_pred ccchHHhhhh-hhcCC--ceeeecCCCCchhHHHHHHHHHHHc--CCCcEEEEechhhhhccHH-HHHHHHHHhCCceee
Confidence 3344544322 23444 5889999999999999998755554 5566666677777765344 333343458999998
Q ss_pred EcC-CCCc-cccccCCCcEEEECHhhH-HHHHhc-c---ccccccCcccEEEEeccccc
Q psy13788 779 LTG-DVTP-DIQAISSASVIVTTPEKW-DGVSRS-W---QNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 779 ~~g-~~~~-~~~~~~~~~IiV~Tpe~l-~~l~~~-~---~~~~~l~~l~~lViDEaH~l 830 (1034)
... +... ..+..-.|||+.+|..-+ .+.+|. . ......+.+.+.||||+|.+
T Consensus 244 i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 244 IDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred cCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 865 3333 333345899999999876 223321 1 11222356889999999965
No 250
>PHA02558 uvsW UvsW helicase; Provisional
Probab=96.52 E-value=0.011 Score=70.46 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=29.8
Q ss_pred ccccccEEEEeeeecccCCCCchHHHHHHhhhhccccceeecccchh
Q psy13788 4 LTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLN 50 (1034)
Q Consensus 4 ~~~~v~~vViDEvH~l~d~RG~~le~li~~~~~~~~~~~~~~~~~~~ 50 (1034)
+.+++++|||||+|.+.. ..++.++.++ + ...+.+|+|++.
T Consensus 219 ~~~~~~~iIvDEaH~~~~---~~~~~il~~~-~--~~~~~lGLTATp 259 (501)
T PHA02558 219 WFDQFGMVIVDECHLFTG---KSLTSIITKL-D--NCKFKFGLTGSL 259 (501)
T ss_pred hccccCEEEEEchhcccc---hhHHHHHHhh-h--ccceEEEEeccC
Confidence 578999999999999964 4567766552 1 234678988864
No 251
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.42 E-value=0.024 Score=54.94 Aligned_cols=38 Identities=34% Similarity=0.538 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt 753 (1034)
+..+++.+|+|+|||..+...+-... ..+..++++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehh
Confidence 67899999999999975444333322 224555555544
No 252
>KOG1132|consensus
Probab=96.40 E-value=0.017 Score=69.29 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=51.7
Q ss_pred ccccccccCCCChhHHHHHHHHh---cCCCcEEEEcCCCChhhHHHHHHH---HHHHHh----------C----------
Q psy13788 689 QYESLYKFSHFNPIQTQIFHCLY---HTDNNVLLGAPTGSGKTIAAEITC---FRVFKQ----------C---------- 742 (1034)
Q Consensus 689 ~~~~~~~~~~~~~~Q~~ai~~l~---~~~~~vll~apTGsGKT~~~~l~i---l~~l~~----------~---------- 742 (1034)
|..-.|+|+ |+|.|......++ ....+.++.+|||+|||++-+-.. .+.+.. .
T Consensus 13 Gv~V~fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~ 91 (945)
T KOG1132|consen 13 GVPVEFPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSD 91 (945)
T ss_pred CceeeccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCcc
Confidence 444456776 8999998775544 356789999999999997644333 333320 0
Q ss_pred -----------C------CCeEEEEcCcHHHHHHHHHHHHH
Q psy13788 743 -----------P------EAKVVYIAPLKALVKERVADWKV 766 (1034)
Q Consensus 743 -----------~------~~~~lvi~Pt~~L~~q~~~~~~~ 766 (1034)
+ .+++.|-.-|..=..|.++++++
T Consensus 92 ~~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrr 132 (945)
T KOG1132|consen 92 SGGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRR 132 (945)
T ss_pred CCCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhh
Confidence 0 25677777777777888888764
No 253
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=96.27 E-value=0.0031 Score=54.47 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=29.8
Q ss_pred cccccchhhhccCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCC
Q psy13788 133 GRTASNYYIKHNDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 186 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 186 (1034)
...+.+..+. .|+|+|. .||+-+. +.+..+|.||+||+||.|
T Consensus 39 ~vli~t~~~~-~Gi~~~~~~~vi~~~~-----------~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 39 KVLVATDVAE-RGLDLPGVDLVIIYDL-----------PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred eEEEECChhh-CCcChhcCCEEEEeCC-----------CCCHHHHHHhhcccccCC
Confidence 4444555555 3899994 5554322 567799999999999986
No 254
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.23 E-value=0.012 Score=67.25 Aligned_cols=150 Identities=15% Similarity=0.182 Sum_probs=81.2
Q ss_pred EEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccc-------ccC
Q psy13788 719 LGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQ-------AIS 791 (1034)
Q Consensus 719 l~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-------~~~ 791 (1034)
..+.||||||++..-.|+....++ -...|+.|.....++.+...+........=..-.+..+|.....+ .-.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg-yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd 80 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG-YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHND 80 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc-hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCC
Confidence 357899999999888888877652 466788887777766655444322211100000011111111111 123
Q ss_pred CCcEEEECHhhHHHHHhcc-ccc---cccCcccE-EEEecccccCCC----------ChhHHHHHHHHHHHhhhccCCCe
Q psy13788 792 SASVIVTTPEKWDGVSRSW-QNR---NYVQSVAL-IIIDEIHLLGED----------RGPVLEVIVSRVNFISSYTKRNV 856 (1034)
Q Consensus 792 ~~~IiV~Tpe~l~~l~~~~-~~~---~~l~~l~~-lViDEaH~l~~~----------~~~~~~~il~rl~~l~~~~~~~~ 856 (1034)
+..|..+|.+.+...+.+. .+. ..+.+..+ .+-||||++... -...|+..+. +.-...++-
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~----la~~~nkd~ 156 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVK----LALEQNKDN 156 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHH----HHHhcCCCc
Confidence 5679999999985544432 222 22344454 577999999541 1122333221 111233445
Q ss_pred EEEEEccCCCCHHHHHh
Q psy13788 857 RLVGLSTALANAKDLAT 873 (1034)
Q Consensus 857 ~iv~lSATl~~~~~l~~ 873 (1034)
-++.+|||.+...++..
T Consensus 157 ~~lef~at~~k~k~v~~ 173 (812)
T COG3421 157 LLLEFSATIPKEKSVED 173 (812)
T ss_pred eeehhhhcCCccccHHH
Confidence 57788999886555544
No 255
>PRK09694 helicase Cas3; Provisional
Probab=96.15 E-value=0.023 Score=71.18 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=29.0
Q ss_pred ccccchhhhccCcccceEEEecCceeecCCCCeeeecChhhHHHHhhccCCCCc
Q psy13788 134 RTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQY 187 (1034)
Q Consensus 134 ~~~~~~~~~~~gvn~pa~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 187 (1034)
..++|..+. .||+++..|+|.. ..++..+.|++||.||.+-
T Consensus 624 ILVaTQViE-~GLDId~DvlItd------------laPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 624 ILVATQVVE-QSLDLDFDWLITQ------------LCPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEEECcchh-heeecCCCeEEEC------------CCCHHHHHHHHhccCCCCC
Confidence 455565555 4788887776641 2345689999999999877
No 256
>PHA02533 17 large terminase protein; Provisional
Probab=96.13 E-value=0.11 Score=62.00 Aligned_cols=149 Identities=15% Similarity=0.064 Sum_probs=85.4
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC-CeEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK-KKVV 777 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~-~~v~ 777 (1034)
|+|+|...+..+. .++-.++..+=..|||.+....++......++..+++++|+..-+...+++++..+..... .+..
T Consensus 60 L~p~Q~~i~~~~~-~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~~ 138 (534)
T PHA02533 60 MRDYQKDMLKIMH-KNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQPG 138 (534)
T ss_pred CcHHHHHHHHHHh-cCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhcc
Confidence 8899999988774 4555678888899999887654443333455779999999999998888887754443111 0111
Q ss_pred EEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeE
Q psy13788 778 ELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVR 857 (1034)
Q Consensus 778 ~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~ 857 (1034)
+............++.|.+.|-+. . ...=.+..++|+||+|.+.+ +...+..+...+. + ....+
T Consensus 139 -i~~~~~~~I~l~NGS~I~~lss~~-----~----t~rG~~~~~liiDE~a~~~~-~~e~~~ai~p~la---s--g~~~r 202 (534)
T PHA02533 139 -IVEWNKGSIELENGSKIGAYASSP-----D----AVRGNSFAMIYIDECAFIPN-FIDFWLAIQPVIS---S--GRSSK 202 (534)
T ss_pred -eeecCccEEEeCCCCEEEEEeCCC-----C----ccCCCCCceEEEeccccCCC-HHHHHHHHHHHHH---c--CCCce
Confidence 111111111112455554444221 0 00112457899999998864 2233333333221 1 12345
Q ss_pred EEEEccC
Q psy13788 858 LVGLSTA 864 (1034)
Q Consensus 858 iv~lSAT 864 (1034)
++..|++
T Consensus 203 ~iiiSTp 209 (534)
T PHA02533 203 IIITSTP 209 (534)
T ss_pred EEEEECC
Confidence 6666665
No 257
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=96.10 E-value=0.0069 Score=49.13 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhh
Q psy13788 503 PILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAW 549 (1034)
Q Consensus 503 p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~ 549 (1034)
|||++.++++|.+.|+ |+++|+.+++++|..+=. +++.+++|++.++
T Consensus 11 ~Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 11 PGIGPKRAEKLYEAGIKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp TTCHHHHHHHHHHTTCSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999 999999999999988633 5667777776654
No 258
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.06 E-value=0.052 Score=61.18 Aligned_cols=123 Identities=16% Similarity=0.152 Sum_probs=64.8
Q ss_pred cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC--cHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc
Q psy13788 712 HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP--LKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA 789 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P--t~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 789 (1034)
..+..+++.+|||+|||+....-+.+........++.++.. .+.-+.++...|. +.+++.+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a----~~~gv~~~~----------- 199 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFG----KILGVPVHA----------- 199 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHH----HHcCCceEe-----------
Confidence 46788999999999999876555544433322234444431 2222334444443 334443332
Q ss_pred cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 790 ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 790 ~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
+-+++.+...+.. +.+.++|+||++-.... ...+...+..+ .......-.++.+|||...
T Consensus 200 -------~~~~~~l~~~l~~------l~~~DlVLIDTaG~~~~--d~~l~e~La~L---~~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 200 -------VKDGGDLQLALAE------LRNKHMVLIDTIGMSQR--DRTVSDQIAML---HGADTPVQRLLLLNATSHG 259 (374)
T ss_pred -------cCCcccHHHHHHH------hcCCCEEEEcCCCCCcc--cHHHHHHHHHH---hccCCCCeEEEEecCccCh
Confidence 2233333333332 34568999999965431 12233333322 2222334568889999754
No 259
>KOG0345|consensus
Probab=95.99 E-value=0.045 Score=61.14 Aligned_cols=74 Identities=16% Similarity=0.276 Sum_probs=50.0
Q ss_pred HHHHhhh-cCCCccccccccccccchhhhccCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccc
Q psy13788 115 VLQIFGR-AGRPQYNTSDLGRTASNYYIKHNDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSG 191 (1034)
Q Consensus 115 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G 191 (1034)
..+.|.+ ...+.+||.-.++ |++.|- .|| .|||- -.++-|..++||+||.|- .|
T Consensus 299 ~~~~F~~~~~~vl~~TDVaAR----------GlDip~iD~Vv-----Q~DpP------~~~~~FvHR~GRTaR~gr--~G 355 (567)
T KOG0345|consen 299 VLEAFRKLSNGVLFCTDVAAR----------GLDIPGIDLVV-----QFDPP------KDPSSFVHRCGRTARAGR--EG 355 (567)
T ss_pred HHHHHHhccCceEEeehhhhc----------cCCCCCceEEE-----ecCCC------CChhHHHhhcchhhhccC--cc
Confidence 3344533 3334456654444 677775 566 47743 345789999999999986 89
Q ss_pred eEEEECCcccHHHHHHHhcCC
Q psy13788 192 HATIITPHEKLNHYLSLLTNQ 212 (1034)
Q Consensus 192 ~~~i~~~~~~~~~y~~~~~~~ 212 (1034)
.+|++..+ +.+.|..+|...
T Consensus 356 ~Aivfl~p-~E~aYveFl~i~ 375 (567)
T KOG0345|consen 356 NAIVFLNP-REEAYVEFLRIK 375 (567)
T ss_pred ceEEEecc-cHHHHHHHHHhc
Confidence 99998888 557888887433
No 260
>KOG0921|consensus
Probab=95.87 E-value=0.13 Score=61.79 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=90.9
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCC---CCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA 789 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~---~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 789 (1034)
.++-+++-..||+|||.-+.--++..+.++. ...+.+.-|++--+..+++++.+.-+...+-.| |-.......
T Consensus 392 dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tv----gy~vRf~Sa 467 (1282)
T KOG0921|consen 392 ENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETC----GYNVRFDSA 467 (1282)
T ss_pred cCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccc----ccccccccc
Confidence 5667889999999999998888888877643 256777789987777777766543333222222 111111111
Q ss_pred --cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 790 --ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 790 --~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
..---|..+|-+.+..... .-+..+.++|+||.|.-.. -+.-+..+++-+. ......+++++|||+ |
T Consensus 468 ~prpyg~i~fctvgvllr~~e-----~glrg~sh~i~deiherdv-~~dfll~~lr~m~----~ty~dl~v~lmsatI-d 536 (1282)
T KOG0921|consen 468 TPRPYGSIMFCTVGVLLRMME-----NGLRGISHVIIDEIHERDV-DTDFVLIVLREMI----STYRDLRVVLMSATI-D 536 (1282)
T ss_pred ccccccceeeeccchhhhhhh-----hcccccccccchhhhhhcc-chHHHHHHHHhhh----ccchhhhhhhhhccc-c
Confidence 1123588899887755554 2356788999999998643 1223333333332 233567778888887 3
Q ss_pred HHHHHhHhc
Q psy13788 868 AKDLATWLN 876 (1034)
Q Consensus 868 ~~~l~~~l~ 876 (1034)
.+.+..+++
T Consensus 537 Td~f~~~f~ 545 (1282)
T KOG0921|consen 537 TDLFTNFFS 545 (1282)
T ss_pred hhhhhhhhc
Confidence 344444443
No 261
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.86 E-value=0.065 Score=62.15 Aligned_cols=136 Identities=11% Similarity=0.111 Sum_probs=82.7
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcHH-HHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccC-C
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLKA-LVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS-S 792 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~~-L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-~ 792 (1034)
-.++.++.|||||.+..+-++..+... ++.+++++-|+.. |-.-++..+...+.. +|+....-....+....... +
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~-~g~~~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSI-EGINYEFKKSKSSMEIKILNTG 81 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHH-cCChhheeecCCccEEEecCCC
Confidence 367889999999999888887777665 6899999999987 555666666655554 44432111111111111122 4
Q ss_pred CcEEEECH-hhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 793 ASVIVTTP-EKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 793 ~~IiV~Tp-e~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
..|++..- +....+. ....+.++.+|||..+.. ..++.++.|++. . ...+.+.+|.++..
T Consensus 82 ~~i~f~g~~d~~~~ik-------~~~~~~~~~idEa~~~~~---~~~~~l~~rlr~---~--~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 82 KKFIFKGLNDKPNKLK-------SGAGIAIIWFEEASQLTF---EDIKELIPRLRE---T--GGKKFIIFSSNPES 142 (396)
T ss_pred eEEEeecccCChhHhh-------CcceeeeehhhhhhhcCH---HHHHHHHHHhhc---c--CCccEEEEEcCcCC
Confidence 45555444 3222211 123368999999999853 477777777642 1 12124677777765
No 262
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.84 E-value=0.068 Score=68.05 Aligned_cols=123 Identities=16% Similarity=0.234 Sum_probs=76.1
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 778 (1034)
+++-|.+|+..+...++-+++.++.|+|||++.-. +...+.. .+.+++.++||-.-+.. +. +..|+...
T Consensus 382 Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~-~G~~V~g~ApTgkAA~~----L~----e~~Gi~a~- 450 (1102)
T PRK13826 382 LSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEA-AGYRVVGGALAGKAAEG----LE----KEAGIQSR- 450 (1102)
T ss_pred CCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHH-cCCeEEEEcCcHHHHHH----HH----HhhCCCee-
Confidence 89999999998864566789999999999985432 3333333 47899999999765543 22 22333322
Q ss_pred EcCCCCccccccCCCcEEEECHhhHHHHHhcc-ccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeE
Q psy13788 779 LTGDVTPDIQAISSASVIVTTPEKWDGVSRSW-QNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVR 857 (1034)
Q Consensus 779 ~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~-~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~ 857 (1034)
|..+| +..| .....+..-++||||||-++.. ..+..++... .....+
T Consensus 451 --------------------TIas~---ll~~~~~~~~l~~~~vlVIDEAsMv~~---~~m~~Ll~~~------~~~gar 498 (1102)
T PRK13826 451 --------------------TLSSW---ELRWNQGRDQLDNKTVFVLDEAGMVAS---RQMALFVEAV------TRAGAK 498 (1102)
T ss_pred --------------------eHHHH---HhhhccCccCCCCCcEEEEECcccCCH---HHHHHHHHHH------HhcCCE
Confidence 22222 1111 1223456677999999999874 4444444332 124567
Q ss_pred EEEEccC
Q psy13788 858 LVGLSTA 864 (1034)
Q Consensus 858 iv~lSAT 864 (1034)
+|++.=+
T Consensus 499 vVLVGD~ 505 (1102)
T PRK13826 499 LVLVGDP 505 (1102)
T ss_pred EEEECCH
Confidence 7776543
No 263
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.83 E-value=0.041 Score=62.79 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=42.4
Q ss_pred CChhHHHHHHHHh-----cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHH
Q psy13788 699 FNPIQTQIFHCLY-----HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKE 759 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~-----~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q 759 (1034)
+++-|..++..++ ..+.++++.+|-|+|||.+.-.. ... .+..+..+++++||-.-|..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i-~~~-~~~~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAI-IDY-LRSRGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHH-HHH-hccccceEEEecchHHHHHh
Confidence 7788999987772 26778999999999999854322 222 23346789999999765543
No 264
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.63 E-value=0.035 Score=69.51 Aligned_cols=68 Identities=16% Similarity=0.106 Sum_probs=53.9
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh--CCCCeEEEEcCcHHHHHHHHHHHHHHh
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ--CPEAKVVYIAPLKALVKERVADWKVKF 768 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~--~~~~~~lvi~Pt~~L~~q~~~~~~~~~ 768 (1034)
.++|-|.+|+.. ...+++|.|..|||||.+..--+...+.. .+..++|+++.|+..|.+..+++.+.+
T Consensus 4 ~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 489999998863 45789999999999999876666666643 246799999999999998777776543
No 265
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.57 E-value=0.043 Score=65.90 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=86.5
Q ss_pred CCChhHHHHHHHHhcCC-CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHH-HHHHHhhhhcCCe
Q psy13788 698 HFNPIQTQIFHCLYHTD-NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVA-DWKVKFEARLKKK 775 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~-~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~-~~~~~~~~~~~~~ 775 (1034)
..+|+|.+...++-..+ +.+++..++-+|||.+.+..+...+.. ....++++.||..++.+..+ ++...+.....++
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~-~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~ 94 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ-DPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLR 94 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe-CCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHH
Confidence 37899999999885332 469999999999999666555444444 35789999999999988653 3333332211111
Q ss_pred EEEEc------CCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC---CChhHHHHHHHHHH
Q psy13788 776 VVELT------GDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE---DRGPVLEVIVSRVN 846 (1034)
Q Consensus 776 v~~~~------g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~---~~~~~~~~il~rl~ 846 (1034)
..+. ++.+...+.+.+..+.++....- ....-..++++++||+|.+.. .-|..++....|.+
T Consensus 95 -~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~--------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~ 165 (557)
T PF05876_consen 95 -RKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP--------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTK 165 (557)
T ss_pred -HHhCchhhcccCCchhheecCCCEEEEEeCCCC--------cccccCCcCEEEEechhhccccCccCCCHHHHHHHHHh
Confidence 1111 12222223344555655543221 111235678999999999953 56777777777775
No 266
>PRK06526 transposase; Provisional
Probab=95.54 E-value=0.09 Score=56.51 Aligned_cols=46 Identities=24% Similarity=0.295 Sum_probs=29.7
Q ss_pred hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHH
Q psy13788 711 YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKE 759 (1034)
Q Consensus 711 ~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q 759 (1034)
...+.++++.+|+|+|||..+.......... +.+++++ ...+|+.+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~--g~~v~f~-t~~~l~~~ 140 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQA--GHRVLFA-TAAQWVAR 140 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHC--CCchhhh-hHHHHHHH
Confidence 3467899999999999998766544444333 5566553 33344444
No 267
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=95.49 E-value=0.06 Score=67.42 Aligned_cols=89 Identities=16% Similarity=0.220 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhccccceeccccceecchhH--H---HHHHhhh-cCCCccccccccccccchhhhccCcccc-e-EEE
Q psy13788 82 MLTIAHQIKQHISQGTEMYNAKHGCYVHIGIL--D---VLQIFGR-AGRPQYNTSDLGRTASNYYIKHNDIELF-T-EHM 153 (1034)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~h~~~~--~---~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~gvn~p-a-~vi 153 (1034)
+...+.++.+.++... -...|--|. + +...|.+ .+.+..||.-++. ||+.| | +-|
T Consensus 816 Ie~~~~~L~~LVPEar-------I~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEt----------GIDIPnANTiI 878 (1139)
T COG1197 816 IEKKAERLRELVPEAR-------IAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIET----------GIDIPNANTII 878 (1139)
T ss_pred HHHHHHHHHHhCCceE-------EEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeec----------CcCCCCCceEE
Confidence 3344555555555322 123355454 2 2333533 4455567766666 89999 4 777
Q ss_pred ecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCc
Q psy13788 154 TKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 154 i~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~ 199 (1034)
|..... ++.++..|+-||.||-.. .|+|++++.+
T Consensus 879 Ie~AD~----------fGLsQLyQLRGRVGRS~~--~AYAYfl~p~ 912 (1139)
T COG1197 879 IERADK----------FGLAQLYQLRGRVGRSNK--QAYAYFLYPP 912 (1139)
T ss_pred Eecccc----------ccHHHHHHhccccCCccc--eEEEEEeecC
Confidence 754433 446999999999999744 8999999986
No 268
>KOG1805|consensus
Probab=95.44 E-value=0.055 Score=65.66 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=77.8
Q ss_pred CCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeE
Q psy13788 697 SHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKV 776 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v 776 (1034)
..++.-|++|+-.++...+..+|.+=+|+|||......+-..+. .+.++|..+=|..-++.+.-+++. .++.+
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~--~gkkVLLtsyThsAVDNILiKL~~-----~~i~~ 740 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA--LGKKVLLTSYTHSAVDNILIKLKG-----FGIYI 740 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH--cCCeEEEEehhhHHHHHHHHHHhc-----cCcce
Confidence 35899999999888867777888888899999765444433333 378999999998887776666653 33332
Q ss_pred EEEcCCCC---------------cc-----ccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccC
Q psy13788 777 VELTGDVT---------------PD-----IQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 777 ~~~~g~~~---------------~~-----~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~ 831 (1034)
.-+..+.. .. .+......||.+|-=-+...+. ..+.++++|+|||-.+.
T Consensus 741 lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf------~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 741 LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF------VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh------hccccCEEEEccccccc
Confidence 22221111 00 0123567888888533322111 12558999999998654
No 269
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.44 E-value=0.041 Score=59.41 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=66.6
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHh-CC---------CCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCC
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQ-CP---------EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVT 784 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~-~~---------~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~ 784 (1034)
.+++++++||.|||.+. +.+.+ ++ -+.+++-+|...=....+..+-..++ .....
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg----aP~~~------ 126 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG----APYRP------ 126 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC----cccCC------
Confidence 57999999999999943 33322 11 13445556666554444544443332 22110
Q ss_pred ccccccCCCcEEEECHhhH----HHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEE
Q psy13788 785 PDIQAISSASVIVTTPEKW----DGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVG 860 (1034)
Q Consensus 785 ~~~~~~~~~~IiV~Tpe~l----~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~ 860 (1034)
. .+...+ ..+++ --.++++||||+|.++.+....-+.++.-++++...+ ++.+|+
T Consensus 127 -~-----------~~~~~~~~~~~~llr-------~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV~ 185 (302)
T PF05621_consen 127 -R-----------DRVAKLEQQVLRLLR-------RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL--QIPIVG 185 (302)
T ss_pred -C-----------CCHHHHHHHHHHHHH-------HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc--CCCeEE
Confidence 0 011111 23333 2467899999999998877777888888899886555 445665
Q ss_pred E
Q psy13788 861 L 861 (1034)
Q Consensus 861 l 861 (1034)
+
T Consensus 186 v 186 (302)
T PF05621_consen 186 V 186 (302)
T ss_pred e
Confidence 5
No 270
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.41 E-value=0.043 Score=68.63 Aligned_cols=68 Identities=16% Similarity=0.087 Sum_probs=53.9
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh--CCCCeEEEEcCcHHHHHHHHHHHHHHh
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ--CPEAKVVYIAPLKALVKERVADWKVKF 768 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~--~~~~~~lvi~Pt~~L~~q~~~~~~~~~ 768 (1034)
.++|-|.+|+.. ...+++|.|..|||||.+..--+...+.. .+..++|+++-|+..|.++.+++.+.+
T Consensus 9 ~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 499999998863 45789999999999998876666665543 246789999999999998777776544
No 271
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.34 E-value=0.05 Score=52.18 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~ 758 (1034)
+..+++.+|+|+|||..+...+..... ....++++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC--CCCCEEEECCEEcccc
Confidence 567999999999999965444333211 1135888887765433
No 272
>KOG0298|consensus
Probab=95.34 E-value=0.071 Score=66.50 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=95.3
Q ss_pred hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC----------------CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 711 YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC----------------PEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 711 ~~~~~~vll~apTGsGKT~~~~l~il~~l~~~----------------~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
...|+++++.-.-|+|||.+-+...+...... ..+.+|||+|. ++..||..++.+.... ++
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~--~l 447 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS--LL 447 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc--cc
Confidence 34667888888999999987655443322110 13779999997 7778999988765544 36
Q ss_pred eEEEEcCCCCc---cccccCCCcEEEECHhhHHHHHhcc-----------ccc-----cccCcc--cEEEEecccccCCC
Q psy13788 775 KVVELTGDVTP---DIQAISSASVIVTTPEKWDGVSRSW-----------QNR-----NYVQSV--ALIIIDEIHLLGED 833 (1034)
Q Consensus 775 ~v~~~~g~~~~---~~~~~~~~~IiV~Tpe~l~~l~~~~-----------~~~-----~~l~~l--~~lViDEaH~l~~~ 833 (1034)
++..+.|-... ....+-++|||++|.+.+..=+... +.+ ..+-.+ --|++|||+++..
T Consensus 448 Kv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves- 526 (1394)
T KOG0298|consen 448 KVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES- 526 (1394)
T ss_pred eEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc-
Confidence 88887773221 1234568999999999883222110 000 001111 2389999999976
Q ss_pred ChhHHHHHHHHHHHhhhccCCCeEEEEEccC----CCCHHHHHhHhcccC
Q psy13788 834 RGPVLEVIVSRVNFISSYTKRNVRLVGLSTA----LANAKDLATWLNITK 879 (1034)
Q Consensus 834 ~~~~~~~il~rl~~l~~~~~~~~~iv~lSAT----l~~~~~l~~~l~~~~ 879 (1034)
.......++.++- ....-+.|+| +.+--.+..+++..+
T Consensus 527 ssS~~a~M~~rL~--------~in~W~VTGTPiq~Iddl~~Ll~fLk~~P 568 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLH--------AINRWCVTGTPIQKIDDLFPLLEFLKLPP 568 (1394)
T ss_pred hHHHHHHHHHHhh--------hhceeeecCCchhhhhhhHHHHHHhcCCC
Confidence 2334444454442 3345789999 333344555555443
No 273
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.30 E-value=0.28 Score=58.31 Aligned_cols=135 Identities=13% Similarity=0.225 Sum_probs=85.2
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHH-HHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCe-EEEEcCCCCcccccc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFR-VFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK-VVELTGDVTPDIQAI 790 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~-~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~-v~~~~g~~~~~~~~~ 790 (1034)
..+-.++..|=-.|||.... +++. .+...++.+++|++|.+..++..++++...+.+..+-+ +....|+ .......
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~ 330 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFP 330 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEec
Confidence 45678888999999998766 4444 44445799999999999999999999988776542222 2223331 2111111
Q ss_pred CC--CcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 791 SS--ASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 791 ~~--~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
.+ ..|.++|- ++ .+...=+.++++|+|||+.+.+ ..+..++..+ ...+.++|.+|.|-+
T Consensus 331 nG~kstI~FaSa-------rn-tNsiRGqtfDLLIVDEAqFIk~---~al~~ilp~l------~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 331 DGSRSTIVFASS-------HN-TNGIRGQDFNLLFVDEANFIRP---DAVQTIMGFL------NQTNCKIIFVSSTNT 391 (738)
T ss_pred CCCccEEEEEec-------cC-CCCccCCcccEEEEechhhCCH---HHHHHHHHHH------hccCccEEEEecCCC
Confidence 12 24444421 10 1111124789999999999985 5556665433 234778899998743
No 274
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.30 E-value=0.048 Score=66.67 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=41.1
Q ss_pred cccccchhhhccCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcc
Q psy13788 133 GRTASNYYIKHNDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE 200 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~ 200 (1034)
...+.+..++ .|+++|. .||+.+...|. .+-+...|.|++|||||. ..|.++++++..
T Consensus 494 ~VLV~t~~L~-rGfDiP~v~lVvi~DadifG------~p~~~~~~iqriGRagR~---~~G~vi~~~~~~ 553 (655)
T TIGR00631 494 DVLVGINLLR-EGLDLPEVSLVAILDADKEG------FLRSERSLIQTIGRAARN---VNGKVIMYADKI 553 (655)
T ss_pred eEEEEcChhc-CCeeeCCCcEEEEeCccccc------CCCCHHHHHHHhcCCCCC---CCCEEEEEEcCC
Confidence 3344444444 3899996 58877666652 334567899999999996 479999998864
No 275
>KOG0388|consensus
Probab=95.28 E-value=0.05 Score=63.31 Aligned_cols=148 Identities=14% Similarity=0.101 Sum_probs=93.4
Q ss_pred CChhHHHHH---HHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 699 FNPIQTQIF---HCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 699 ~~~~Q~~ai---~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
+.++|.+-+ -.+|.+|=|.|+.-.-|-|||.-..-.+......+ --+..|||+|.-.| ..++.++.+.+. .+
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL-~NWaqEisrFlP---~~ 643 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTL-HNWAQEISRFLP---SF 643 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHH-hHHHHHHHHhCc---cc
Confidence 455777655 34677889999999999999986544333332222 23678999998665 445666654433 36
Q ss_pred eEEEEcCCCCcccc------------ccCCCcEEEECHhhHH---HHHhccccccccCcccEEEEecccccCCCChhHHH
Q psy13788 775 KVVELTGDVTPDIQ------------AISSASVIVTTPEKWD---GVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLE 839 (1034)
Q Consensus 775 ~v~~~~g~~~~~~~------------~~~~~~IiV~Tpe~l~---~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~ 839 (1034)
++.-+-|+...... ...+.+|+|+|.+.+. ..+++ -+..+.|+|||+.+.++....|.
T Consensus 644 k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-------vKWQYMILDEAQAIKSSsS~RWK 716 (1185)
T KOG0388|consen 644 KVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-------VKWQYMILDEAQAIKSSSSSRWK 716 (1185)
T ss_pred eeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-------hhhhheehhHHHHhhhhhhhHHH
Confidence 77777776543211 1246799999988762 22221 12357999999999876666666
Q ss_pred HHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 840 VIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 840 ~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
.+++.- . . -.++||+|+-
T Consensus 717 tLLsF~-------c-R-NRLLLTGTPI 734 (1185)
T KOG0388|consen 717 TLLSFK-------C-R-NRLLLTGTPI 734 (1185)
T ss_pred HHhhhh-------c-c-ceeeecCCcc
Confidence 666411 1 1 2467777743
No 276
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=95.19 E-value=0.05 Score=66.17 Aligned_cols=127 Identities=14% Similarity=0.151 Sum_probs=83.9
Q ss_pred ChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEE
Q psy13788 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVEL 779 (1034)
Q Consensus 700 ~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~ 779 (1034)
+|+=.|.+-.+. -...-+.-+.||=|||+++.+|+.-.-. .+..+.++...--|+.--...+.+.+ ..+|+.++..
T Consensus 80 ~~~dVQliG~i~-lh~g~iaEM~TGEGKTL~atlp~ylnaL--~gkgVhvVTvNdYLA~RDae~m~~l~-~~LGlsvG~~ 155 (822)
T COG0653 80 RHFDVQLLGGIV-LHLGDIAEMRTGEGKTLVATLPAYLNAL--AGKGVHVVTVNDYLARRDAEWMGPLY-EFLGLSVGVI 155 (822)
T ss_pred ChhhHHHhhhhh-hcCCceeeeecCCchHHHHHHHHHHHhc--CCCCcEEeeehHHhhhhCHHHHHHHH-HHcCCceeec
Confidence 333344444332 3345788999999999999999864433 36777777777777765455444444 4589999998
Q ss_pred cCCCCccccc-cCCCcEEEECHhhH-HHHHh----ccccccccCcccEEEEeccccc
Q psy13788 780 TGDVTPDIQA-ISSASVIVTTPEKW-DGVSR----SWQNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 780 ~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~----~~~~~~~l~~l~~lViDEaH~l 830 (1034)
..+.++..+. .-.|||..+|-..+ .+.++ ............+.|+||+|.+
T Consensus 156 ~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 156 LAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred cCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 8877665443 34799999998876 11221 1122233456888999999965
No 277
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.13 E-value=0.12 Score=56.37 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=24.7
Q ss_pred CChhHHHHHHHHh---cC-CCcEEEEcCCCChhhHHHHH
Q psy13788 699 FNPIQTQIFHCLY---HT-DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~---~~-~~~vll~apTGsGKT~~~~l 733 (1034)
+++.+.+++..+. +. ...+++.+|+|+|||+.+..
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 5666777776542 23 33688999999999986544
No 278
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.13 E-value=0.044 Score=67.75 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=55.6
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh--CCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ--CPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~--~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
++|-|.+|+.. .+.+++|.|+.|||||.+...-+...+.. .+..++++++.|+..|.+...++.+.++
T Consensus 3 Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 3 LNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 88999998864 45789999999999999877777666654 2457899999999999998888876665
No 279
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.11 E-value=0.5 Score=54.84 Aligned_cols=122 Identities=19% Similarity=0.179 Sum_probs=62.5
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccC
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 791 (1034)
++.+++.+|||+|||++..--+........+.++.++. |.+.-+.++...|... +++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~----~~vp~~-------------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKI----MGIPVE-------------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHH----hCCceE--------------
Confidence 56788999999999976654443332122245555544 4444344445544432 333221
Q ss_pred CCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 792 ~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
.+.+++.+...+.. +.+.++|+||.+-....+. ..+..+...+. ........++.+|||...
T Consensus 283 ----~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d~-~~~~~L~~ll~---~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 283 ----VVYDPKELAKALEQ------LRDCDVILIDTAGRSQRDK-RLIEELKALIE---FSGEPIDVYLVLSATTKY 344 (424)
T ss_pred ----ccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCCH-HHHHHHHHHHh---ccCCCCeEEEEEECCCCH
Confidence 12345545444432 3357999999997654221 11222222111 111223457788998653
No 280
>KOG0328|consensus
Probab=95.06 E-value=0.16 Score=53.03 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=42.9
Q ss_pred ccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 134 RTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 134 ~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
.+..|--++ -|+++|- +.||. || -+....-|..++||+||-|- .|.+|=+...++...|.+
T Consensus 319 vLitTDVwa-RGiDv~qVslviN----YD------LP~nre~YIHRIGRSGRFGR--kGvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 319 VLITTDVWA-RGIDVQQVSLVIN----YD------LPNNRELYIHRIGRSGRFGR--KGVAINFVKSDDLRILRD 380 (400)
T ss_pred EEEEechhh-ccCCcceeEEEEe----cC------CCccHHHHhhhhccccccCC--cceEEEEecHHHHHHHHH
Confidence 344444444 4899996 55553 65 23334789999999999876 899999999876666554
No 281
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.05 E-value=0.13 Score=52.89 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=64.1
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCC
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSA 793 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 793 (1034)
-+++++|||+|||++..--+.+...+ +.++.+++ ..|.=+.++.+.+.+ .+++.+.......
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~----~l~vp~~~~~~~~---------- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAE----ILGVPFYVARTES---------- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHH----HHTEEEEESSTTS----------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHH----Hhccccchhhcch----------
Confidence 47899999999998765544444444 44554444 455555555555443 3555544321111
Q ss_pred cEEEECHhhH-HHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 794 SVIVTTPEKW-DGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 794 ~IiV~Tpe~l-~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
.|..+ ...+.. ...++.++|++|-+-+...+ ...+..++.+.....+.--++.+|||...
T Consensus 67 -----~~~~~~~~~l~~----~~~~~~D~vlIDT~Gr~~~d-----~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 67 -----DPAEIAREALEK----FRKKGYDLVLIDTAGRSPRD-----EELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp -----CHHHHHHHHHHH----HHHTTSSEEEEEE-SSSSTH-----HHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred -----hhHHHHHHHHHH----HhhcCCCEEEEecCCcchhh-----HHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 12222 222221 11245789999998775431 22233333333344555678889999865
No 282
>KOG0342|consensus
Probab=94.93 E-value=0.21 Score=56.38 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=35.1
Q ss_pred cCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHH
Q psy13788 144 NDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLN 203 (1034)
Q Consensus 144 ~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~ 203 (1034)
-|++.|+ +|| .||+-. .+.+|..++||.||.|- .|+++++..+.++.
T Consensus 392 RGlD~P~V~~Vv-----Q~~~P~------d~~~YIHRvGRTaR~gk--~G~alL~l~p~El~ 440 (543)
T KOG0342|consen 392 RGLDIPDVDWVV-----QYDPPS------DPEQYIHRVGRTAREGK--EGKALLLLAPWELG 440 (543)
T ss_pred ccCCCCCceEEE-----EeCCCC------CHHHHHHHhccccccCC--CceEEEEeChhHHH
Confidence 5899997 555 355322 24899999999999664 89999988886543
No 283
>PRK14974 cell division protein FtsY; Provisional
Probab=94.92 E-value=0.28 Score=54.76 Aligned_cols=123 Identities=18% Similarity=0.215 Sum_probs=63.0
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC--cHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCC
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP--LKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISS 792 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P--t~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 792 (1034)
.-+++.+|+|+|||++..-.+. .+.. .+.+++++.. .|.-+.++...+.. .+++.+.. +....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~~-~g~~V~li~~Dt~R~~a~eqL~~~a~----~lgv~v~~--~~~g~------- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLKK-NGFSVVIAAGDTFRAGAIEQLEEHAE----RLGVKVIK--HKYGA------- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHHH-cCCeEEEecCCcCcHHHHHHHHHHHH----HcCCceec--ccCCC-------
Confidence 3578899999999986544433 2333 3556666653 33433333443333 24444432 11110
Q ss_pred CcEEEECHhh-HHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 793 ASVIVTTPEK-WDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 793 ~~IiV~Tpe~-l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
.|.. +...+.. ......++|++|.+.++..+. . ++..++.+.....+...++.++||..+
T Consensus 206 ------dp~~v~~~ai~~----~~~~~~DvVLIDTaGr~~~~~-~----lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 206 ------DPAAVAYDAIEH----AKARGIDVVLIDTAGRMHTDA-N----LMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred ------CHHHHHHHHHHH----HHhCCCCEEEEECCCccCCcH-H----HHHHHHHHHHhhCCceEEEeeccccch
Confidence 1221 1111111 012356899999999986321 1 222223332334456678888998754
No 284
>PRK04296 thymidine kinase; Provisional
Probab=94.90 E-value=0.041 Score=56.53 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=26.6
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P 752 (1034)
.-.++.+|+|+|||+.++-.+.+.... +.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 346789999999998776666555443 678888866
No 285
>PRK08181 transposase; Validated
Probab=94.89 E-value=0.16 Score=55.04 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=37.5
Q ss_pred CChhHHHHHH---HHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHH
Q psy13788 699 FNPIQTQIFH---CLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKE 759 (1034)
Q Consensus 699 ~~~~Q~~ai~---~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q 759 (1034)
+++.|..++. .+.+.+.++++.+|+|+|||..+.........+ +.+++|+ +..+|+.+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~-~~~~L~~~ 148 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFT-RTTDLVQK 148 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeee-eHHHHHHH
Confidence 4566776664 244577899999999999997655444333332 5566554 45566655
No 286
>KOG0386|consensus
Probab=94.88 E-value=0.035 Score=67.38 Aligned_cols=123 Identities=22% Similarity=0.307 Sum_probs=75.7
Q ss_pred CChhHHHHH---HHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh-CCCCeEEEEcCcHHHHHHHHHHHHHHhhhh-cC
Q psy13788 699 FNPIQTQIF---HCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-CPEAKVVYIAPLKALVKERVADWKVKFEAR-LK 773 (1034)
Q Consensus 699 ~~~~Q~~ai---~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~-~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~-~~ 773 (1034)
+.++|..-+ -.+++++-|.++.-.+|-|||..-.--+...+.. ...+.-+||||+-.|.. |...|..- ..
T Consensus 395 Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-----W~~Ef~kWaPS 469 (1157)
T KOG0386|consen 395 LKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-----WSSEFPKWAPS 469 (1157)
T ss_pred CchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-----chhhccccccc
Confidence 666777655 3567777799999999999997543333222211 12466789999988764 33333321 23
Q ss_pred CeEEEEcCCCCcccc-----ccCCCcEEEECHhhHHHHHhccccccccCcc--cEEEEecccccCC
Q psy13788 774 KKVVELTGDVTPDIQ-----AISSASVIVTTPEKWDGVSRSWQNRNYVQSV--ALIIIDEIHLLGE 832 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~-----~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l--~~lViDEaH~l~~ 832 (1034)
+....+.|.-..... .....+|+++|.+.+. +.+..++.+ .++||||-|.|.+
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyii------kdk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYII------KDKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhc------CCHHHHhccCCcceeecccccccc
Confidence 445555553221111 1247899999999762 123334444 4799999999975
No 287
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.87 E-value=0.39 Score=58.34 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=84.1
Q ss_pred hhHHHHHHHHhcCCC-cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEE
Q psy13788 701 PIQTQIFHCLYHTDN-NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVEL 779 (1034)
Q Consensus 701 ~~Q~~ai~~l~~~~~-~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~ 779 (1034)
.-|.+.+..+++.+. -+++.|.=|-|||.+.-+++..........+++|.+|+.+=++..+.-..+.+.. +|.+-...
T Consensus 217 ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~-lg~~~~v~ 295 (758)
T COG1444 217 AEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEF-LGYKRKVA 295 (758)
T ss_pred HHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHH-hCCccccc
Confidence 334445555665444 6888999999999988877743333322469999999999988877766665554 44432211
Q ss_pred cCC-CCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEE
Q psy13788 780 TGD-VTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRL 858 (1034)
Q Consensus 780 ~g~-~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~i 858 (1034)
... ............|=+.+|.... ..-+++|||||=.+.- +.+..++. ..+.
T Consensus 296 ~d~~g~~~~~~~~~~~i~y~~P~~a~------------~~~DllvVDEAAaIpl---plL~~l~~-----------~~~r 349 (758)
T COG1444 296 PDALGEIREVSGDGFRIEYVPPDDAQ------------EEADLLVVDEAAAIPL---PLLHKLLR-----------RFPR 349 (758)
T ss_pred cccccceeeecCCceeEEeeCcchhc------------ccCCEEEEehhhcCCh---HHHHHHHh-----------hcCc
Confidence 111 0011011122335566665421 1168999999988763 44444443 2346
Q ss_pred EEEccCCCC
Q psy13788 859 VGLSTALAN 867 (1034)
Q Consensus 859 v~lSATl~~ 867 (1034)
++||+|+..
T Consensus 350 v~~sTTIhG 358 (758)
T COG1444 350 VLFSTTIHG 358 (758)
T ss_pred eEEEeeecc
Confidence 889999865
No 288
>KOG4150|consensus
Probab=94.83 E-value=0.16 Score=57.81 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=30.6
Q ss_pred eecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 168 VHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 168 ~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
-++|++.+.|-+|||||+.-|.-...|..+.+-+ ++|++
T Consensus 610 FP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVD-Q~Y~~ 648 (1034)
T KOG4150|consen 610 FPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVD-QYYMS 648 (1034)
T ss_pred CchhHHHHHHHhccccccCCCceEEEEEeccchh-hHhhc
Confidence 4788999999999999999887776666666533 56765
No 289
>KOG0989|consensus
Probab=94.76 E-value=0.068 Score=56.98 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=30.9
Q ss_pred ccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 815 YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 815 ~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
..+..+.+|+||||.|..+-...++..+ ...+..+++++...-+++
T Consensus 126 ~~~~fKiiIlDEcdsmtsdaq~aLrr~m-------E~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDAQAALRRTM-------EDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCcceEEEEechhhhhHHHHHHHHHHH-------hccccceEEEEEcCChhh
Confidence 3466789999999999764333343333 334567888888776544
No 290
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.76 E-value=0.21 Score=52.60 Aligned_cols=106 Identities=24% Similarity=0.303 Sum_probs=57.7
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHH-HhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCc
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVF-KQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSAS 794 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l-~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 794 (1034)
.+++.+|+|+|||-. +-++...+ ...++.+++|+... +........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~---------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD---------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT----------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc----------------------------
Confidence 489999999999983 22333333 34567788877653 444432222210
Q ss_pred EEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 795 VIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 795 IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
...+.+ .. .+...+++++|.+|.+.+. ...-+.+...+..+. ..+.++|+.|...|.
T Consensus 86 ---~~~~~~---~~------~~~~~DlL~iDDi~~l~~~-~~~q~~lf~l~n~~~---~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 ---GEIEEF---KD------RLRSADLLIIDDIQFLAGK-QRTQEELFHLFNRLI---ESGKQLILTSDRPPS 142 (219)
T ss_dssp ---TSHHHH---HH------HHCTSSEEEEETGGGGTTH-HHHHHHHHHHHHHHH---HTTSEEEEEESS-TT
T ss_pred ---ccchhh---hh------hhhcCCEEEEecchhhcCc-hHHHHHHHHHHHHHH---hhCCeEEEEeCCCCc
Confidence 011222 11 2456899999999999752 122233333333322 235577777766654
No 291
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.71 E-value=0.076 Score=65.33 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=41.5
Q ss_pred ccccccchhhhccCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCc
Q psy13788 132 LGRTASNYYIKHNDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 132 l~~~~~~~~~~~~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~ 199 (1034)
+...+++..++ .|+++|. .||+.+...|. -+-+...|.||+|||||. ..|.++++++.
T Consensus 497 i~vlV~t~~L~-rGfdlp~v~lVii~d~eifG------~~~~~~~yiqr~GR~gR~---~~G~~i~~~~~ 556 (652)
T PRK05298 497 FDVLVGINLLR-EGLDIPEVSLVAILDADKEG------FLRSERSLIQTIGRAARN---VNGKVILYADK 556 (652)
T ss_pred ceEEEEeCHHh-CCccccCCcEEEEeCCcccc------cCCCHHHHHHHhccccCC---CCCEEEEEecC
Confidence 34444555555 4899996 57776665552 223567899999999995 47999999985
No 292
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.75 Score=51.86 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccC
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 791 (1034)
.+.+.+++|||+|||+....-+..... .+.++.++. |.|.-+.++...+.. ..++.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~--~GkkVglI~aDt~RiaAvEQLk~yae----~lgipv~-------------- 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHSRIGTVQQLQDYVK----TIGFEVI-------------- 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHH--cCCcEEEEecCCcchHHHHHHHHHhh----hcCCcEE--------------
Confidence 457899999999999876555444332 245555444 444333333333322 1222221
Q ss_pred CCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 792 ~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
++.+|..+...+..... -.+.++|++|-+=+...+ ...++.+...+ ....+...++.+|||...
T Consensus 301 ----v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd-~~lm~EL~~~l----k~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 301 ----AVRDEAAMTRALTYFKE---EARVDYILIDTAGKNYRA-SETVEEMIETM----GQVEPDYICLTLSASMKS 364 (436)
T ss_pred ----ecCCHHHHHHHHHHHHh---ccCCCEEEEeCccccCcC-HHHHHHHHHHH----hhcCCCeEEEEECCccCh
Confidence 13366666544432111 125789999988775432 22334333322 222333446668998653
No 293
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.65 E-value=0.99 Score=54.07 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=83.4
Q ss_pred CChhHHHHHHHHhc--CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC---
Q psy13788 699 FNPIQTQIFHCLYH--TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK--- 773 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~--~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~--- 773 (1034)
|+|.-.+=++.+++ +.+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-+.+.++++...+.. .+
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-~Gi~IlvTAH~~~ts~evF~rv~~~le~-lg~~~ 247 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-LEIDIVVQAQRKTMCLTLYNRVETVVHA-YQHKP 247 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-cCCeEEEECCChhhHHHHHHHHHHHHHH-hcccc
Confidence 44444444444332 45567888999999998876655544432 3689999999999999999988877763 22
Q ss_pred -----CeEEEEcCCCCccccccCCCcEEEECHhhHH-------HHHhccccccccCcccEEEEecccccCCCChhHHHHH
Q psy13788 774 -----KKVVELTGDVTPDIQAISSASVIVTTPEKWD-------GVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVI 841 (1034)
Q Consensus 774 -----~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~-------~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~i 841 (1034)
-++....|+. -.|.+..|.... ...+. .+...-...+++|+|||+.+.. +.+..+
T Consensus 248 ~fp~~~~iv~vkgg~---------E~I~f~~p~gak~G~sti~F~Ars-~~s~RG~~~DLLIVDEAAfI~~---~~l~aI 314 (752)
T PHA03333 248 WFPEEFKIVTLKGTD---------ENLEYISDPAAKEGKTTAHFLASS-PNAARGQNPDLVIVDEAAFVNP---GALLSV 314 (752)
T ss_pred ccCCCceEEEeeCCe---------eEEEEecCcccccCcceeEEeccc-CCCcCCCCCCEEEEECcccCCH---HHHHHH
Confidence 0112222211 112222211110 00000 1111113568999999999985 455555
Q ss_pred HHHHHHhhhccCCCeEEEEEccCC
Q psy13788 842 VSRVNFISSYTKRNVRLVGLSTAL 865 (1034)
Q Consensus 842 l~rl~~l~~~~~~~~~iv~lSATl 865 (1034)
+..+. ..+.++++.|.+-
T Consensus 315 lP~l~------~~~~k~IiISS~~ 332 (752)
T PHA03333 315 LPLMA------VKGTKQIHISSPV 332 (752)
T ss_pred HHHHc------cCCCceEEEeCCC
Confidence 54331 2356677887765
No 294
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.58 E-value=0.071 Score=59.08 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=43.6
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh-CCCCeEEEEcCcHHHH
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-CPEAKVVYIAPLKALV 757 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~-~~~~~~lvi~Pt~~L~ 757 (1034)
.+++.|.+.+..+...+.+++++++||||||+.. -+++..+.. .++.+++.+-.+.||.
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCcccc
Confidence 3677888888887778889999999999999854 334444432 2456888888787763
No 295
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.56 E-value=0.095 Score=53.59 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=31.0
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHH
Q psy13788 717 VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADW 764 (1034)
Q Consensus 717 vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~ 764 (1034)
+++.+|+|+|||..++-.+...+.+ +.+++|+... +-..+..+++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e-~~~~~~~~~~ 46 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLE-ESPEELIENA 46 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECC-CCHHHHHHHH
Confidence 6899999999999777666665543 6788888643 3344444443
No 296
>PRK06893 DNA replication initiation factor; Validated
Probab=94.50 E-value=0.25 Score=52.38 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=21.8
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
.+++.+|+|+|||.......-....+ +.+++|+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~ 74 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIP 74 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEee
Confidence 47899999999997554443333332 45565554
No 297
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.48 E-value=0.086 Score=64.81 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=58.1
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCe
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--PEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~--~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~ 775 (1034)
.+++-|.+|+.. ...+++|.|..|||||.+..--+...+... .+.++++++.++..+..+.+++...++. .++.
T Consensus 196 ~L~~~Q~~av~~---~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~-~~v~ 271 (684)
T PRK11054 196 PLNPSQARAVVN---GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGT-EDIT 271 (684)
T ss_pred CCCHHHHHHHhC---CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCC-CCcE
Confidence 489999998853 446789999999999998766655555432 4579999999999999988888776652 2344
Q ss_pred EEEE
Q psy13788 776 VVEL 779 (1034)
Q Consensus 776 v~~~ 779 (1034)
+..+
T Consensus 272 v~TF 275 (684)
T PRK11054 272 ARTF 275 (684)
T ss_pred EEeH
Confidence 4443
No 298
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.48 E-value=0.7 Score=52.01 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHH-HhCCCCeEEEEcC-cHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccC
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVF-KQCPEAKVVYIAP-LKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l-~~~~~~~~lvi~P-t~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 791 (1034)
++.+.+.+|||.|||++-.--+.+.. ........+|-.- .|-=|.+|.. .+++.+++.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk----~Ya~im~vp~~-------------- 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLK----TYADIMGVPLE-------------- 264 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHH----HHHHHhCCceE--------------
Confidence 77899999999999876433333333 2222333344443 3433333343 34444555543
Q ss_pred CCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHH
Q psy13788 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDL 871 (1034)
Q Consensus 792 ~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l 871 (1034)
++-+|.-|...+. .+.+.++|.||=+-+-. .-...++.++.+......--..+.+|||.. .+++
T Consensus 265 ----vv~~~~el~~ai~------~l~~~d~ILVDTaGrs~-----~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dl 328 (407)
T COG1419 265 ----VVYSPKELAEAIE------ALRDCDVILVDTAGRSQ-----YDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDL 328 (407)
T ss_pred ----EecCHHHHHHHHH------HhhcCCEEEEeCCCCCc-----cCHHHHHHHHHHHhccccceEEEEEecCcc-hHHH
Confidence 3446776654443 24566888888775522 122334455544444444456788899974 3444
Q ss_pred Hh
Q psy13788 872 AT 873 (1034)
Q Consensus 872 ~~ 873 (1034)
.+
T Consensus 329 ke 330 (407)
T COG1419 329 KE 330 (407)
T ss_pred HH
Confidence 43
No 299
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.45 E-value=0.15 Score=48.51 Aligned_cols=17 Identities=47% Similarity=0.755 Sum_probs=13.8
Q ss_pred EEEEcCCCChhhHHHHH
Q psy13788 717 VLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 717 vll~apTGsGKT~~~~l 733 (1034)
+++.+|.|+|||..+..
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 58999999999985433
No 300
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.44 E-value=0.31 Score=52.91 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=17.4
Q ss_pred CcEEEEcCCCChhhHHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEITC 735 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~i 735 (1034)
.++++.+|+|+|||.++-..+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 578999999999999775543
No 301
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.43 E-value=0.018 Score=57.60 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=52.2
Q ss_pred EEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcEEE
Q psy13788 718 LLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIV 797 (1034)
Q Consensus 718 ll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV 797 (1034)
++.|+=|-|||.+.-+.+...+.. ...+++|.+|+.+=++..++.....+.. ++.+............-...+..|-.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-~~~~I~vtAP~~~~~~~lf~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~i~f 78 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-GKIRILVTAPSPENVQTLFEFAEKGLKA-LGYKEEKKKRIGQIIKLRFNKQRIEF 78 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------EEEE-SS--S-HHHHHCC---------------------------CCC--B
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-cCceEEEecCCHHHHHHHHHHHHhhccc-cccccccccccccccccccccceEEE
Confidence 578999999999766665444333 2368999999998777765554433332 22222000000000000112456667
Q ss_pred ECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 798 TTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 798 ~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
..|+.+... -...+++|||||=.+.- +.+..++ .....+.+|.|...
T Consensus 79 ~~Pd~l~~~---------~~~~DlliVDEAAaIp~---p~L~~ll-----------~~~~~vv~stTi~G 125 (177)
T PF05127_consen 79 VAPDELLAE---------KPQADLLIVDEAAAIPL---PLLKQLL-----------RRFPRVVFSTTIHG 125 (177)
T ss_dssp --HHHHCCT-------------SCEEECTGGGS-H---HHHHHHH-----------CCSSEEEEEEEBSS
T ss_pred ECCHHHHhC---------cCCCCEEEEechhcCCH---HHHHHHH-----------hhCCEEEEEeeccc
Confidence 777755211 12458999999988762 3333322 12335677777765
No 302
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.42 E-value=0.069 Score=59.33 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=42.1
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHH-hCCCCeEEEEcCcHHH
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFK-QCPEAKVVYIAPLKAL 756 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~-~~~~~~~lvi~Pt~~L 756 (1034)
+++.|.+.+..+...+.+++++++||||||... -+++..+. ..+..+++++-.+.||
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCceEEEEcCCCcc
Confidence 667888888877768899999999999999643 33443332 2345788888888776
No 303
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.42 E-value=0.1 Score=65.57 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=53.3
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHHH
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--PEAKVVYIAPLKALVKERVADWKVK 767 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~--~~~~~lvi~Pt~~L~~q~~~~~~~~ 767 (1034)
.++|-|.+|+.. ...+++|.|..|||||.+..--+...+... +..++|+++-|+..+.+..+++.+.
T Consensus 4 ~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 4 HLNPEQREAVKT---TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred ccCHHHHHHHhC---CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 489999998863 457899999999999998777766666542 4578999999999888877777653
No 304
>PRK08727 hypothetical protein; Validated
Probab=94.36 E-value=0.31 Score=51.89 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=22.8
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
..+++.+|+|+|||-........ +.+ .+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~-~~~-~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA-AEQ-AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-HHH-cCCcEEEEe
Confidence 35999999999999755433333 222 256777764
No 305
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.35 E-value=0.096 Score=67.68 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=94.0
Q ss_pred CCChhHHHHHHHH----hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC--CCeEEEEcCcHHHHHHHHHHHHHHhhhh
Q psy13788 698 HFNPIQTQIFHCL----YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP--EAKVVYIAPLKALVKERVADWKVKFEAR 771 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l----~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~--~~~~lvi~Pt~~L~~q~~~~~~~~~~~~ 771 (1034)
.++|+|.+.++-+ ...+.+.++...-|-|||+-.+..+.......+ .+..++++|+ +++.++.+++. ++..
T Consensus 338 ~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~-k~~~- 414 (866)
T COG0553 338 ELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFE-KFAP- 414 (866)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHh-hhCc-
Confidence 4788899977542 234667888999999999776655544333322 3689999998 56666677774 3433
Q ss_pred cCCe-EEEEcCCCCc-c--ccc---cCC------CcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHH
Q psy13788 772 LKKK-VVELTGDVTP-D--IQA---ISS------ASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVL 838 (1034)
Q Consensus 772 ~~~~-v~~~~g~~~~-~--~~~---~~~------~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~ 838 (1034)
..+ +....|.... . ... ... .+++++|.+.+..... -.....-...+.+|+||+|.+.+..+...
T Consensus 415 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~-~~~~l~~~~~~~~v~DEa~~ikn~~s~~~ 492 (866)
T COG0553 415 -DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLV-DHGGLKKIEWDRVVLDEAHRIKNDQSSEG 492 (866)
T ss_pred -cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhh-hHHHHhhceeeeeehhhHHHHhhhhhHHH
Confidence 234 6677776541 1 111 112 7999999998855210 01122234567899999999876433333
Q ss_pred HHHHHHHHHhhhccCCCeEEEEEccCC
Q psy13788 839 EVIVSRVNFISSYTKRNVRLVGLSTAL 865 (1034)
Q Consensus 839 ~~il~rl~~l~~~~~~~~~iv~lSATl 865 (1034)
..+. .++ ... .+.+|.|+
T Consensus 493 ~~l~-~~~-------~~~-~~~LtgTP 510 (866)
T COG0553 493 KALQ-FLK-------ALN-RLDLTGTP 510 (866)
T ss_pred HHHH-HHh-------hcc-eeeCCCCh
Confidence 3333 222 122 37888886
No 306
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.35 E-value=1.3 Score=61.00 Aligned_cols=217 Identities=13% Similarity=0.137 Sum_probs=108.3
Q ss_pred CChhHHHHHHHHhcC-CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 699 FNPIQTQIFHCLYHT-DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~-~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
+++-|.+|+..++.+ ++-.++.++.|+|||.+.. .+...+. ..+.+++.++||-.-+.+..+. .|+...
T Consensus 430 Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~~-~~G~~V~~lAPTgrAA~~L~e~--------~g~~A~ 499 (1960)
T TIGR02760 430 LSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLAS-EQGYEIQIITAGSLSAQELRQK--------IPRLAS 499 (1960)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHHH-hcCCeEEEEeCCHHHHHHHHHH--------hcchhh
Confidence 889999999988744 3568899999999998532 2333333 3478999999998755443222 111111
Q ss_pred EEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeE
Q psy13788 778 ELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVR 857 (1034)
Q Consensus 778 ~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~ 857 (1034)
.+..-. ...... .-..|...+ +. ....+..-++||||||-++.. ..+..++... ...+.+
T Consensus 500 Ti~~~l----~~l~~~-~~~~tv~~f---l~---~~~~l~~~~vlIVDEAsMl~~---~~~~~Ll~~a------~~~gar 559 (1960)
T TIGR02760 500 TFITWV----KNLFND-DQDHTVQGL---LD---KSSPFSNKDIFVVDEANKLSN---NELLKLIDKA------EQHNSK 559 (1960)
T ss_pred hHHHHH----Hhhccc-ccchhHHHh---hc---ccCCCCCCCEEEEECCCCCCH---HHHHHHHHHH------hhcCCE
Confidence 110000 000000 011122222 21 122345678999999999874 3344444322 234677
Q ss_pred EEEEccC--CCC--H-HHHHhHhcccCCceeecCCCCc-ccccEEEEecCCCCCCchhhhhccHHHHHHHHhhC-CCCCe
Q psy13788 858 LVGLSTA--LAN--A-KDLATWLNITKQGMYNFRPSVR-PVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHS-PEKPV 930 (1034)
Q Consensus 858 iv~lSAT--l~~--~-~~l~~~l~~~~~~~~~~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 930 (1034)
+|++.=+ ++. + ..|. .+.......+.+....+ ..++ .+.. .+-..+. ..+.+.+.... ....+
T Consensus 560 vVlvGD~~QL~sV~aG~~f~-~L~~~gv~t~~l~~i~rq~~~v--~i~~---~~~~~r~----~~ia~~y~~L~~~r~~t 629 (1960)
T TIGR02760 560 LILLNDSAQRQGMSAGSAID-LLKEGGVTTYAWVDTKQQKASV--EISE---AVDKLRV----DYIASAWLDLTPDRQNS 629 (1960)
T ss_pred EEEEcChhhcCccccchHHH-HHHHCCCcEEEeecccccCcce--eeec---cCchHHH----HHHHHHHHhcccccCce
Confidence 8877544 322 1 2222 12111111222211111 1111 1111 0001111 12222222222 34469
Q ss_pred EEEecChHHHHHHHHHHHHHHhccC
Q psy13788 931 MIFVSSRRQTRLTAIDLITILACET 955 (1034)
Q Consensus 931 lVF~~s~~~~~~~a~~L~~~~~~~~ 955 (1034)
+|+..+.++...+...+...+...+
T Consensus 630 liv~~t~~dr~~Ln~~iR~~L~~~G 654 (1960)
T TIGR02760 630 QVLATTHREQQDLTQIIRNALKQEG 654 (1960)
T ss_pred EEEcCCcHHHHHHHHHHHHHHHHcC
Confidence 9999999988888888887775443
No 307
>KOG1015|consensus
Probab=94.30 E-value=0.18 Score=60.76 Aligned_cols=139 Identities=16% Similarity=0.217 Sum_probs=75.7
Q ss_pred cEEEEcCCCChhhHH---HHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhh---cCCeEEEEcCCCCccccc
Q psy13788 716 NVLLGAPTGSGKTIA---AEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR---LKKKVVELTGDVTPDIQA 789 (1034)
Q Consensus 716 ~vll~apTGsGKT~~---~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~---~~~~v~~~~g~~~~~~~~ 789 (1034)
-+|+.---|-|||+- |+-.++..-. ..-.++|||+|...+. .|+++|.+.+... -.+.|..+..-..+..+.
T Consensus 698 GcILAHcMGLGKTlQVvtflhTvL~c~k-lg~ktaLvV~PlNt~~-NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~ 775 (1567)
T KOG1015|consen 698 GCILAHCMGLGKTLQVVTFLHTVLLCDK-LGFKTALVVCPLNTAL-NWMNEFEKWMEGLEDDEKLEVSELATVKRPEERS 775 (1567)
T ss_pred chHHHHhhcccceehhhHHHHHHHHhhc-cCCceEEEEcchHHHH-HHHHHHHHhcccccccccceeehhhhccChHHHH
Confidence 355555559999963 3333333322 3457999999986654 4666666555421 134444443322222211
Q ss_pred ------cCCCcEEEECHhhHHHHHhccc--c---------ccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhcc
Q psy13788 790 ------ISSASVIVTTPEKWDGVSRSWQ--N---------RNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYT 852 (1034)
Q Consensus 790 ------~~~~~IiV~Tpe~l~~l~~~~~--~---------~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~ 852 (1034)
.....|.|.-++++..+...-. . ...-...++||+||+|.|.+.- ..+...+.+++
T Consensus 776 ~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNek-sa~Skam~~ir------ 848 (1567)
T KOG1015|consen 776 YMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEK-SAVSKAMNSIR------ 848 (1567)
T ss_pred HHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccch-HHHHHHHHHHH------
Confidence 2344677777777754443100 0 0111346899999999998632 34444555553
Q ss_pred CCCeEEEEEccCC
Q psy13788 853 KRNVRLVGLSTAL 865 (1034)
Q Consensus 853 ~~~~~iv~lSATl 865 (1034)
.-|.|+||+|+
T Consensus 849 --tkRRI~LTGTP 859 (1567)
T KOG1015|consen 849 --TKRRIILTGTP 859 (1567)
T ss_pred --hheeEEeecCc
Confidence 22456777774
No 308
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.30 E-value=0.87 Score=48.54 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHhc------C-CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHH
Q psy13788 700 NPIQTQIFHCLYH------T-DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758 (1034)
Q Consensus 700 ~~~Q~~ai~~l~~------~-~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~ 758 (1034)
++.|.+++..+.. . ...+++.+++|+|||..+...+... .. .+..++|+ +..+|..
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l-~~-~g~~v~~i-t~~~l~~ 140 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL-LL-RGKSVLII-TVADIMS 140 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH-Hh-cCCeEEEE-EHHHHHH
Confidence 4456666644321 1 2469999999999998655443333 33 25566555 4444443
No 309
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.26 E-value=0.11 Score=57.35 Aligned_cols=58 Identities=26% Similarity=0.318 Sum_probs=43.4
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh-CCCCeEEEEcCcHHHH
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-CPEAKVVYIAPLKALV 757 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~-~~~~~~lvi~Pt~~L~ 757 (1034)
+++-|.+.+..+...+.++++++|||||||+.. -+++..+.. .+..+++++-.+.|+.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhhc
Confidence 667788888777767889999999999999854 334454443 2467888988888863
No 310
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.23 E-value=0.41 Score=51.14 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=34.7
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADW 764 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~ 764 (1034)
.|..+++.+|+|+|||+.+.-.+...+.+ +.+++|+.- .+-..|..+++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~-ee~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVAL-EEHPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEe-eCCHHHHHHHH
Confidence 46779999999999999777666666543 778888873 33444444443
No 311
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.18 E-value=0.25 Score=54.24 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=45.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccC
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 791 (1034)
++.+++++|||+|||+...--+.....+..+.++.++. |.+.-+.++...|.. .+++.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~----~~~~p~~-------------- 255 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAK----ILGVPVK-------------- 255 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHH----HhCCcee--------------
Confidence 45688999999999987654443333221224444443 334444444444432 2333221
Q ss_pred CCcEEEECHhhHHHHHhccccccccCcccEEEEecc
Q psy13788 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEI 827 (1034)
Q Consensus 792 ~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEa 827 (1034)
.+.+|..+...+.. +.+.++|+||.+
T Consensus 256 ----~~~~~~~l~~~l~~------~~~~d~vliDt~ 281 (282)
T TIGR03499 256 ----VARDPKELRKALDR------LRDKDLILIDTA 281 (282)
T ss_pred ----ccCCHHHHHHHHHH------ccCCCEEEEeCC
Confidence 11245555544442 245689999975
No 312
>PRK12377 putative replication protein; Provisional
Probab=94.18 E-value=0.52 Score=50.40 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKER 760 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~ 760 (1034)
..++++.+|+|+|||..+...+-... + .+..+ +.++..+|..+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~-~-~g~~v-~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL-A-KGRSV-IVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-H-cCCCe-EEEEHHHHHHHH
Confidence 35799999999999976554443333 2 24444 444556666653
No 313
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=94.15 E-value=0.19 Score=58.94 Aligned_cols=38 Identities=26% Similarity=0.269 Sum_probs=25.8
Q ss_pred ccccEEEEeeeecccCCCCchHHHHHHhhhhccccceeecccch
Q psy13788 6 ELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSL 49 (1034)
Q Consensus 6 ~~v~~vViDEvH~l~d~RG~~le~li~~~~~~~~~~~~~~~~~~ 49 (1034)
++.++||+||||.++.+.+-.+...+....+ .+|++++
T Consensus 145 ~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~------~LGLTAT 182 (442)
T COG1061 145 NEFGLIIFDEVHHLPAPSYRRILELLSAAYP------RLGLTAT 182 (442)
T ss_pred cccCEEEEEccccCCcHHHHHHHHhhhcccc------eeeeccC
Confidence 3689999999999987555545444433111 6788775
No 314
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.11 E-value=0.21 Score=58.83 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=29.1
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKE 759 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q 759 (1034)
..+++.+|+|+|||.......-....+.++.+++|+. ..++..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-SEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-HHHHHHH
Confidence 4589999999999986655444444444466777774 4455544
No 315
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.08 E-value=0.3 Score=54.27 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=24.2
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L 756 (1034)
.+.|+.+|+|+|||..+.+..-.. +....-+..+.+=
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~-----~~~f~~~sAv~~g 85 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTT-----NAAFEALSAVTSG 85 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhh-----CCceEEecccccc
Confidence 479999999999999765543322 4445555554443
No 316
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.01 E-value=0.16 Score=63.18 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=56.0
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh--CCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ--CPEAKVVYIAPLKALVKERVADWKVKFEA 770 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~--~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~ 770 (1034)
++|-|.+|+.. ...+++|.|+.|||||.+..--+...+.. .+..++++|+.|+..+.+..+++.+.++.
T Consensus 2 Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~ 72 (664)
T TIGR01074 2 LNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGK 72 (664)
T ss_pred CCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCc
Confidence 78999998763 45789999999999999877777777754 24578999999999999988888776653
No 317
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.00 E-value=0.42 Score=63.17 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=46.2
Q ss_pred CCChhHHHHHHHHhc-CCCcEEEEcCCCChhhHHH--HHHHHHHHHhCCCCeEEEEcCcHHHHHH
Q psy13788 698 HFNPIQTQIFHCLYH-TDNNVLLGAPTGSGKTIAA--EITCFRVFKQCPEAKVVYIAPLKALVKE 759 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~-~~~~vll~apTGsGKT~~~--~l~il~~l~~~~~~~~lvi~Pt~~L~~q 759 (1034)
.+++-|.+|+..++. .++-++|.+..|+|||++. ++.++..+....+.+++.++||-.-+..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~ 899 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGE 899 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHH
Confidence 489999999998874 3456889999999999864 3333444444456789999999776554
No 318
>PLN03025 replication factor C subunit; Provisional
Probab=93.97 E-value=0.36 Score=54.09 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=17.0
Q ss_pred CcEEEEcCCCChhhHHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEITC 735 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~i 735 (1034)
.++++.+|+|+|||..+...+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALA 55 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 479999999999998665543
No 319
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.85 E-value=0.36 Score=51.21 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=23.1
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
.++.+++.+|+|+|||..+....-.... .+..++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASY--GGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh--CCCcEEEEe
Confidence 4467999999999999855443333222 244555544
No 320
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.81 E-value=0.66 Score=54.42 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=30.1
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHh-CCCCeEEEEcCcHHHHHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQ-CPEAKVVYIAPLKALVKERVAD 763 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~-~~~~~~lvi~Pt~~L~~q~~~~ 763 (1034)
..+++.+++|+|||.... ++.+.+.. .++.+++|+.+ .++..+....
T Consensus 142 npl~i~G~~G~GKTHLl~-Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~ 189 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLK-AAKNYIESNFSDLKVSYMSG-DEFARKAVDI 189 (450)
T ss_pred CceEEECCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH-HHHHHHHHHH
Confidence 358999999999996543 33444433 45677777665 4555554443
No 321
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.80 E-value=0.34 Score=47.91 Aligned_cols=39 Identities=33% Similarity=0.429 Sum_probs=27.0
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHH
Q psy13788 717 VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALV 757 (1034)
Q Consensus 717 vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~ 757 (1034)
+++.+|+|+|||..+...+..... .+..++|+.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 678999999999866555444433 367788877654443
No 322
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.78 E-value=0.54 Score=50.34 Aligned_cols=138 Identities=17% Similarity=0.261 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc---CcHHHHHHHHHHHHHHhhhhcCCeEEE-EcCCCCcc-c
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA---PLKALVKERVADWKVKFEARLKKKVVE-LTGDVTPD-I 787 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~---Pt~~L~~q~~~~~~~~~~~~~~~~v~~-~~g~~~~~-~ 787 (1034)
.|.-+++.|++|+|||..+.--+.+...+ .+.+++|+. |..+++....... .++.... ..+..... .
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~~~~~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~ 83 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEMSKEQLLQRLLASE-------SGISLSKLRTGSLSDEDW 83 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCCCHHHHHHHHHHHh-------cCCCHHHHhcCCCCHHHH
Confidence 56779999999999998666555555443 267888888 4444444322110 1111110 11111100 0
Q ss_pred -------cccCCCcEEE-----ECHhhHHHHHhccccccccCcccEEEEecccccCCC-----ChhHHHHHHHHHHHhhh
Q psy13788 788 -------QAISSASVIV-----TTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED-----RGPVLEVIVSRVNFISS 850 (1034)
Q Consensus 788 -------~~~~~~~IiV-----~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~-----~~~~~~~il~rl~~l~~ 850 (1034)
......++.+ .|++.+...++.... -.++++||||=.+.+... ....+..++.+++.++.
T Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~---~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~ 160 (242)
T cd00984 84 ERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKK---EHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAK 160 (242)
T ss_pred HHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0011223333 245555444442211 127899999999987432 22345566667766544
Q ss_pred ccCCCeEEEEEcc
Q psy13788 851 YTKRNVRLVGLST 863 (1034)
Q Consensus 851 ~~~~~~~iv~lSA 863 (1034)
.. ++.++++|-
T Consensus 161 ~~--~~~ii~~~q 171 (242)
T cd00984 161 EL--NVPVIALSQ 171 (242)
T ss_pred Hh--CCeEEEecc
Confidence 33 455666653
No 323
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.62 E-value=0.19 Score=55.01 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=47.3
Q ss_pred cccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHH
Q psy13788 692 SLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--PEAKVVYIAPLKALVK 758 (1034)
Q Consensus 692 ~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~--~~~~~lvi~Pt~~L~~ 758 (1034)
.+..|..+++-|.+.+..+.....|+++++.||||||+ ++..+... +..+++.+--|.||--
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-----lLNal~~~i~~~eRvItiEDtaELql 214 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-----LLNALSGFIDSDERVITIEDTAELQL 214 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-----HHHHHHhcCCCcccEEEEeehhhhcc
Confidence 34467789999999999888667799999999999998 33333221 3459999988888743
No 324
>KOG0351|consensus
Probab=93.61 E-value=0.25 Score=62.12 Aligned_cols=90 Identities=16% Similarity=0.216 Sum_probs=58.3
Q ss_pred ceecchhHHHH-HHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccC
Q psy13788 106 CYVHIGILDVL-QIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAG 183 (1034)
Q Consensus 106 ~~~h~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAG 183 (1034)
.|.||||..-. +...++ +.+..+....+|--|.| |+|-|- |-|| .|+ -+=+.--|-|=+||||
T Consensus 513 ~~YHAGl~~~~R~~Vq~~----w~~~~~~VivATVAFGM-GIdK~DVR~Vi----H~~------lPks~E~YYQE~GRAG 577 (941)
T KOG0351|consen 513 AFYHAGLPPKERETVQKA----WMSDKIRVIVATVAFGM-GIDKPDVRFVI----HYS------LPKSFEGYYQEAGRAG 577 (941)
T ss_pred HhhhcCCCHHHHHHHHHH----HhcCCCeEEEEEeeccC-CCCCCceeEEE----ECC------CchhHHHHHHhccccC
Confidence 36799987322 222221 22234566677777887 899996 6555 353 2334578999999999
Q ss_pred CCCccccceEEEECCcccHHHHHHHhcCC
Q psy13788 184 RPQYNTSGHATIITPHEKLNHYLSLLTNQ 212 (1034)
Q Consensus 184 R~~~d~~G~~~i~~~~~~~~~y~~~~~~~ 212 (1034)
|=|. ...++++-..++..+...++...
T Consensus 578 RDG~--~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 578 RDGL--PSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred cCCC--cceeEEecchhHHHHHHHHHHcc
Confidence 9888 45677787777666666666543
No 325
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.52 E-value=0.69 Score=56.81 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.2
Q ss_pred cE-EEEcCCCChhhHHHHHH
Q psy13788 716 NV-LLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 716 ~v-ll~apTGsGKT~~~~l~ 734 (1034)
++ +|.++||+|||.+.-..
T Consensus 782 nvLYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSV 801 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 44 59999999999876554
No 326
>CHL00181 cbbX CbbX; Provisional
Probab=93.51 E-value=0.81 Score=50.27 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCChhhHHHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCF 736 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il 736 (1034)
+.++++.+|+|+|||.++-.-.-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999998765543
No 327
>KOG0925|consensus
Probab=93.47 E-value=0.57 Score=52.80 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhc
Q psy13788 314 TLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMIS 378 (1034)
Q Consensus 314 ~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~ 378 (1034)
+.+..||+.|.-.+.+ ++.=.+|++|.+||.|-++|.-++.+...-.-..+ .++|.+-+
T Consensus 433 EtLMrALE~LnYLaaL-----dDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCs-nEiLsisA 491 (699)
T KOG0925|consen 433 ETLMRALEVLNYLAAL-----DDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCS-NEILSISA 491 (699)
T ss_pred HHHHHHHHHhhhhhhh-----CCCcccchhhhhhhcCCCChHHHHHHhhcCCCCch-HHHHHHHh
Confidence 4456777877777776 33447899999999999999999888765444332 34444443
No 328
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.46 E-value=0.57 Score=52.96 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCC--cEEEEcCCCChhhHHHHHHH
Q psy13788 703 QTQIFHCLYHTDN--NVLLGAPTGSGKTIAAEITC 735 (1034)
Q Consensus 703 Q~~ai~~l~~~~~--~vll~apTGsGKT~~~~l~i 735 (1034)
..+.+..+...++ ++++.+|+|+|||..+....
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~ 57 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALA 57 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHH
Confidence 3444444444555 79999999999998765544
No 329
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.44 E-value=0.25 Score=65.53 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=79.7
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
+|+-|.+|+. ..+++++|.|..|||||.+..--+++.+... +..++++++=|++.+.+...++.+.+.+...-..
T Consensus 2 ~t~~Q~~ai~---~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p- 77 (1232)
T TIGR02785 2 WTDEQWQAIY---TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQEP- 77 (1232)
T ss_pred CCHHHHHHHh---CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCc-
Confidence 6889999987 3688999999999999998877777766543 2357999999999999988888887766432110
Q ss_pred EEcCCCCccccccCCCcEEEECHhhH-HHHHhccccccccCcccEEEEecccc
Q psy13788 778 ELTGDVTPDIQAISSASVIVTTPEKW-DGVSRSWQNRNYVQSVALIIIDEIHL 829 (1034)
Q Consensus 778 ~~~g~~~~~~~~~~~~~IiV~Tpe~l-~~l~~~~~~~~~l~~l~~lViDEaH~ 829 (1034)
.......+...-...-|+|...+ ..+++.......+ +..+=|.||...
T Consensus 78 ---~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~l-dP~F~i~de~e~ 126 (1232)
T TIGR02785 78 ---NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDL-DPSFRILTDTEQ 126 (1232)
T ss_pred ---hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCC-CCCceeCCHHHH
Confidence 00000111112235568898887 4555532211111 224456887764
No 330
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.31 E-value=0.31 Score=56.70 Aligned_cols=43 Identities=26% Similarity=0.412 Sum_probs=27.4
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~ 758 (1034)
..+++.+|+|+|||.......-....+.++.+++|+.. ..+..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~-~~~~~ 179 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS-EKFTN 179 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH-HHHHH
Confidence 35889999999999866443333333344677788743 34443
No 331
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.31 E-value=1.3 Score=47.14 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P 752 (1034)
+.++++.+|+|+|||.......-... . .+.+++|+.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~-~-~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS-Q-RGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-h-CCCeEEEEEH
Confidence 35799999999999976554333222 2 2556666543
No 332
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.27 E-value=0.54 Score=64.73 Aligned_cols=61 Identities=28% Similarity=0.359 Sum_probs=44.5
Q ss_pred CCChhHHHHHHHHhcC-CCcEEEEcCCCChhhHHHH---HHHHHHHHhCCCCeEEEEcCcHHHHHH
Q psy13788 698 HFNPIQTQIFHCLYHT-DNNVLLGAPTGSGKTIAAE---ITCFRVFKQCPEAKVVYIAPLKALVKE 759 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~-~~~vll~apTGsGKT~~~~---l~il~~l~~~~~~~~lvi~Pt~~L~~q 759 (1034)
.+++.|.+|+..++.+ ++-++|.++.|+|||++.. -++.+.+. ..+.+++.++||-.-+.+
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~-~~g~~v~glApT~~Aa~~ 1083 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE-SEQLQVIGLAPTHEAVGE 1083 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH-hcCCeEEEEeChHHHHHH
Confidence 4899999999988743 4557889999999998652 23333333 347789999999766554
No 333
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.24 E-value=0.64 Score=54.41 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=26.6
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P 752 (1034)
..+++.+|+|+|||..+....-......++.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 36999999999999866544433334445678888764
No 334
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.20 E-value=0.5 Score=54.76 Aligned_cols=37 Identities=30% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEc
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIA 751 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~ 751 (1034)
..++++.+|+|+|||.+....+ +.+... ++..++++-
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~-~~l~~~~~~~~~v~in 92 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVF-EELEEIAVKVVYVYIN 92 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHH-HHHHHhcCCcEEEEEE
Confidence 3579999999999998654433 333222 245566663
No 335
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.14 E-value=0.58 Score=52.38 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=31.3
Q ss_pred CChhHHHHHHHHhcCCC---cEEEEcCCCChhhHHHHHHHHHHH
Q psy13788 699 FNPIQTQIFHCLYHTDN---NVLLGAPTGSGKTIAAEITCFRVF 739 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~---~vll~apTGsGKT~~~~l~il~~l 739 (1034)
..|+|...+..+..+|+ -.++.+|.|.|||..+..-+-..+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 56899999998886653 388999999999987655444433
No 336
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.09 E-value=0.95 Score=49.71 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCChhhHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~ 734 (1034)
+.++++.+|+|+|||.++...
T Consensus 58 ~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 347999999999999877443
No 337
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.01 E-value=1.5 Score=47.41 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=80.1
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEc-CCCCccc-c--
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELT-GDVTPDI-Q-- 788 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~-g~~~~~~-~-- 788 (1034)
.|.-+++.|+||.|||..++-.+.+..... +..++|++.--. ..+...++.... .++....+. |....+. .
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm~-~~~l~~R~la~~---s~v~~~~i~~g~l~~~e~~~~ 92 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLEMS-EEELAARLLARL---SGVPYNKIRSGDLSDEEFERL 92 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS--HHHHHHHHHHHH---HTSTHHHHHCCGCHHHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCCCC-HHHHHHHHHHHh---hcchhhhhhccccCHHHHHHH
Confidence 455688999999999997776666666543 478888885211 112222222222 122211111 1111110 0
Q ss_pred -----ccCCCcEEE-E----CHhhHHHHHhccccccccCcccEEEEecccccCC-----CChhHHHHHHHHHHHhhhccC
Q psy13788 789 -----AISSASVIV-T----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-----DRGPVLEVIVSRVNFISSYTK 853 (1034)
Q Consensus 789 -----~~~~~~IiV-~----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-----~~~~~~~~il~rl~~l~~~~~ 853 (1034)
.+....+.+ . |++.+....+...... ..+++||||=.|.+.. .....+..+..+++.++..+
T Consensus 93 ~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~--~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~- 169 (259)
T PF03796_consen 93 QAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREG--KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL- 169 (259)
T ss_dssp HHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHS--TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhc--cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc-
Confidence 012233332 2 4555655555433221 6789999999999854 34566777888888776544
Q ss_pred CCeEEEEEccC
Q psy13788 854 RNVRLVGLSTA 864 (1034)
Q Consensus 854 ~~~~iv~lSAT 864 (1034)
++.++++|..
T Consensus 170 -~i~vi~~sQl 179 (259)
T PF03796_consen 170 -NIPVIALSQL 179 (259)
T ss_dssp -TSEEEEEEEB
T ss_pred -CCeEEEcccc
Confidence 5677877764
No 338
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.01 E-value=0.47 Score=55.18 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=17.1
Q ss_pred EEEEcCCCChhhHHHHHHHHH
Q psy13788 717 VLLGAPTGSGKTIAAEITCFR 737 (1034)
Q Consensus 717 vll~apTGsGKT~~~~l~il~ 737 (1034)
+++.+|.|+|||.++.+.+-.
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999977665443
No 339
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.00 E-value=0.71 Score=48.76 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=18.8
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCF 736 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il 736 (1034)
.+.++++.+|+|+|||..+....-
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~ 60 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACA 60 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999987655443
No 340
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.86 E-value=0.92 Score=60.99 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHhcC-CCcEEEEcCCCChhhHHHH--HHHHHHHHhCCCCeEEEEcCcHHHHHH
Q psy13788 698 HFNPIQTQIFHCLYHT-DNNVLLGAPTGSGKTIAAE--ITCFRVFKQCPEAKVVYIAPLKALVKE 759 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~-~~~vll~apTGsGKT~~~~--l~il~~l~~~~~~~~lvi~Pt~~L~~q 759 (1034)
.+++.|.+|+..++.+ ++-++|.+..|+|||++.- ..++..+....+.+++.++||-.-+.+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHH
Confidence 4899999999998844 4568899999999998642 222332223345788999999766553
No 341
>KOG0335|consensus
Probab=92.77 E-value=0.59 Score=53.55 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=26.6
Q ss_pred cccccEEEEeeeecccC--CCCchHHHHHHhh
Q psy13788 5 TELVKLLIIDEVHLLHG--DRGPVIEALVART 34 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d--~RG~~le~li~~~ 34 (1034)
+++++++|+||..-+.| +.||.|.-++..+
T Consensus 224 l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~ 255 (482)
T KOG0335|consen 224 LDNCKFLVLDEADRMLDEMGFEPQIRKIVEQL 255 (482)
T ss_pred hhhCcEEEecchHHhhhhccccccHHHHhccc
Confidence 46789999999998888 9999999999874
No 342
>KOG4284|consensus
Probab=92.71 E-value=0.4 Score=55.79 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=25.0
Q ss_pred ChhhHHHHhhccCCCCccccceEEEECCcccH-HHHH
Q psy13788 171 GILDVLQIFGRAGRPQYNTSGHATIITPHEKL-NHYL 206 (1034)
Q Consensus 171 ~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~-~~y~ 206 (1034)
.--.|+.++|||||-|- .|-+|.++..++. +.|.
T Consensus 352 d~eTY~HRIGRAgRFG~--~G~aVT~~~~~~e~~~f~ 386 (980)
T KOG4284|consen 352 DEETYFHRIGRAGRFGA--HGAAVTLLEDERELKGFT 386 (980)
T ss_pred chHHHHHHhhhcccccc--cceeEEEeccchhhhhhH
Confidence 34689999999999774 8888887776543 4433
No 343
>KOG1001|consensus
Probab=92.70 E-value=0.49 Score=57.61 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=71.1
Q ss_pred EEEEcCCCChhhHHHHHHHH-HHHHhC------CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc
Q psy13788 717 VLLGAPTGSGKTIAAEITCF-RVFKQC------PEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA 789 (1034)
Q Consensus 717 vll~apTGsGKT~~~~l~il-~~l~~~------~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 789 (1034)
.|+.-.-|-|||......++ +..... .....|+++|+ ++..|+...+ ....+.....+..++| ...+...
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~el-ek~~~~~~l~v~v~~g-r~kd~~e 231 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTEL-EKVTEEDKLSIYVYHG-RTKDKSE 231 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHH-hccCCccceEEEEecc-cccccch
Confidence 66777779999987655444 222222 35678888887 6677877777 4444435567777888 4455555
Q ss_pred cCCCcEEEECHhhHHH-HHhccccccccCcccEEEEecccccCC
Q psy13788 790 ISSASVIVTTPEKWDG-VSRSWQNRNYVQSVALIIIDEIHLLGE 832 (1034)
Q Consensus 790 ~~~~~IiV~Tpe~l~~-l~~~~~~~~~l~~l~~lViDEaH~l~~ 832 (1034)
..+.+||++|++.+.. -+. --..-.+|+||||.+.+
T Consensus 232 l~~~dVVltTy~il~~~~l~-------~i~w~Riildea~~ikn 268 (674)
T KOG1001|consen 232 LNSYDVVLTTYDILKNSPLV-------KIKWLRIVLDEAHTIKN 268 (674)
T ss_pred hcCCceEEeeHHHhhccccc-------ceeEEEEEeccccccCC
Confidence 6788999999998752 111 12223599999999986
No 344
>PRK05642 DNA replication initiation factor; Validated
Probab=92.68 E-value=0.74 Score=48.99 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=23.0
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P 752 (1034)
..+++.+|+|+|||-.... +...+.+ .+.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a-~~~~~~~-~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA-ACLRFEQ-RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHh-CCCcEEEeeH
Confidence 4688999999999975332 2333332 2566776553
No 345
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.58 E-value=2.3 Score=49.07 Aligned_cols=121 Identities=13% Similarity=0.162 Sum_probs=61.7
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCc-HHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccccc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPL-KALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAI 790 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt-~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 790 (1034)
.++.+.+.+|||+|||+....-+-+..... +....++...+ +.=+.++.. .+++.+|+.+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~----~~a~ilGvp~~~v----------- 254 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLR----IYGKLLGVSVRSI----------- 254 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHH----HHHHHcCCceecC-----------
Confidence 566789999999999986544333332222 22334444544 222222233 3444444443321
Q ss_pred CCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 791 SSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 791 ~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
.++..+...+. .+.+.+.+++|.+=+ .+........+..+.......-.++.+|||..
T Consensus 255 -------~~~~dl~~al~------~l~~~d~VLIDTaGr-----sqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~ 312 (420)
T PRK14721 255 -------KDIADLQLMLH------ELRGKHMVLIDTVGM-----SQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS 312 (420)
T ss_pred -------CCHHHHHHHHH------HhcCCCEEEecCCCC-----CcchHHHHHHHHHHhccCCCceEEEEEcCCCC
Confidence 23333322222 245668899998622 22223334444444333334456788999964
No 346
>KOG0331|consensus
Probab=92.51 E-value=0.56 Score=54.65 Aligned_cols=45 Identities=18% Similarity=0.339 Sum_probs=33.3
Q ss_pred cCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcc
Q psy13788 144 NDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE 200 (1034)
Q Consensus 144 ~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~ 200 (1034)
-|+++|- ..||- ||. +-++.+|.+++||-||.|- .|.++.+-...
T Consensus 403 RGLDi~dV~lVIn----ydf------P~~vEdYVHRiGRTGRa~~--~G~A~tfft~~ 448 (519)
T KOG0331|consen 403 RGLDVPDVDLVIN----YDF------PNNVEDYVHRIGRTGRAGK--KGTAITFFTSD 448 (519)
T ss_pred ccCCCccccEEEe----CCC------CCCHHHHHhhcCccccCCC--CceEEEEEeHH
Confidence 3788885 45553 662 3456899999999999654 89999888774
No 347
>KOG0991|consensus
Probab=92.46 E-value=0.2 Score=51.15 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=16.6
Q ss_pred CcEEEEcCCCChhhHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~ 734 (1034)
.|+++.+|+|.|||++....
T Consensus 49 P~liisGpPG~GKTTsi~~L 68 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCL 68 (333)
T ss_pred CceEeeCCCCCchhhHHHHH
Confidence 47999999999999975443
No 348
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.43 E-value=1.1 Score=55.20 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=62.9
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC--cHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccC
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP--LKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P--t~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 791 (1034)
++-+.+++|||+|||++...-+-.......+.++.++.- .+.=+.++...+ .+.+++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~----a~~~gvpv~-------------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIY----GRILGVPVH-------------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHH----HHhCCCCcc--------------
Confidence 445789999999998876554433322322235544442 232222323333 332333221
Q ss_pred CCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 792 ~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
++.+|+.+...+.. +.+.++|+||=+=+...+ .. +...+..+.....+.-.++.+|||..
T Consensus 247 ----~~~~~~~l~~al~~------~~~~D~VLIDTAGRs~~d--~~---l~eel~~l~~~~~p~e~~LVLsAt~~ 306 (767)
T PRK14723 247 ----AVKDAADLRFALAA------LGDKHLVLIDTVGMSQRD--RN---VSEQIAMLCGVGRPVRRLLLLNAASH 306 (767)
T ss_pred ----ccCCHHHHHHHHHH------hcCCCEEEEeCCCCCccC--HH---HHHHHHHHhccCCCCeEEEEECCCCc
Confidence 22366666555442 345589999988766532 11 22333333333445556888899864
No 349
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.34 E-value=1.5 Score=50.17 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=16.5
Q ss_pred CcEEEEcCCCChhhHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~ 734 (1034)
.++++.+|+|+|||.+....
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~ 60 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYV 60 (365)
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 57999999999999865443
No 350
>PRK05973 replicative DNA helicase; Provisional
Probab=92.30 E-value=0.96 Score=47.88 Aligned_cols=50 Identities=22% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWK 765 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~ 765 (1034)
.|.-++|.|++|+|||+.++-.+.....+ +.+++|+.---. ..|..+++.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes-~~~i~~R~~ 112 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT-EQDVRDRLR 112 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC-HHHHHHHHH
Confidence 67779999999999999877666666544 677888863322 244444443
No 351
>PRK04328 hypothetical protein; Provisional
Probab=92.29 E-value=1.4 Score=47.29 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=28.9
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
.|..+++.+|+|+|||..++-.+.+.+.+ +.+++|+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis 58 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVA 58 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEE
Confidence 46679999999999998776666666554 67788876
No 352
>PRK06921 hypothetical protein; Provisional
Probab=92.18 E-value=0.73 Score=50.00 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=28.0
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKE 759 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q 759 (1034)
.+.++++.+|||+|||..+... ...+.+..+..++|+. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~ai-a~~l~~~~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAA-ANELMRKKGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHH-HHHHhhhcCceEEEEE-HHHHHHH
Confidence 3567999999999999765433 3333332245666654 4455444
No 353
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.16 E-value=1.2 Score=53.97 Aligned_cols=40 Identities=15% Similarity=0.343 Sum_probs=25.3
Q ss_pred cCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 816 VQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 816 l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
....+++||||+|+|.. .....+++.+ ...+..+++|+.|
T Consensus 117 ~g~~KV~IIDEah~Ls~---~a~NALLKtL----EEPp~~v~FIL~T 156 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR---HSFNALLKTL----EEPPEHVKFLLAT 156 (647)
T ss_pred cCCCEEEEEechHhCCH---HHHHHHHHHH----HcCCCCeEEEEec
Confidence 35678999999999874 3344444433 3344556666653
No 354
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=92.16 E-value=2 Score=52.95 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=23.7
Q ss_pred HhcccHHHHHHHHHHHHHHHhccCCCCCccccc
Q psy13788 460 LHRNNAIMAARFLKFALMFETKQWPHETPLRQI 492 (1034)
Q Consensus 460 ~~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~ql 492 (1034)
.-..|......+-.|...|..+......||...
T Consensus 714 iD~~W~~hl~~m~~lr~~i~lr~~~q~dPl~ey 746 (762)
T TIGR03714 714 IDENWIEQVDYLQQLKTVVTNRQNGQRNPIFEY 746 (762)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHH
Confidence 345677777777788888877777666777655
No 355
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.15 E-value=0.92 Score=49.51 Aligned_cols=39 Identities=26% Similarity=0.254 Sum_probs=28.1
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P 752 (1034)
.|..+++.||+|+|||....-.+.....+ .+.+++|+.-
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEc
Confidence 67789999999999998665555444333 2677888763
No 356
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=92.15 E-value=1.4 Score=54.79 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=26.3
Q ss_pred HhcccHHHHHHHHHHHHHHHhccCCCCCccccc
Q psy13788 460 LHRNNAIMAARFLKFALMFETKQWPHETPLRQI 492 (1034)
Q Consensus 460 ~~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~ql 492 (1034)
.-..|......+-.|.+.|.-+......||...
T Consensus 717 ID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EY 749 (790)
T PRK09200 717 IDQNWVEQVDALQQLKEGIGLRQYGQRNPIREY 749 (790)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHH
Confidence 345788888888889888888888777888766
No 357
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=92.14 E-value=0.27 Score=50.57 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=45.5
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhh
Q psy13788 487 TPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAW 549 (1034)
Q Consensus 487 ~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~ 549 (1034)
.+|.++ ||||+.++++|.++|| |+++|..+++++|..+-. ++..+..|++.++
T Consensus 3 ~~L~~I----------pGIG~krakkLl~~GF~Sve~Ik~AS~eEL~~V~GIg~k~AekI~e~l~ 57 (232)
T PRK12766 3 EELEDI----------SGVGPSKAEALREAGFESVEDVRAADQSELAEVDGIGNALAARIKADVG 57 (232)
T ss_pred cccccC----------CCcCHHHHHHHHHcCCCCHHHHHhCCHHHHHHccCCCHHHHHHHHHHhc
Confidence 457778 9999999999999999 999999999999998743 5567777877776
No 358
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.08 E-value=0.86 Score=54.12 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=16.5
Q ss_pred EEEEcCCCChhhHHHHHHHHH
Q psy13788 717 VLLGAPTGSGKTIAAEITCFR 737 (1034)
Q Consensus 717 vll~apTGsGKT~~~~l~il~ 737 (1034)
+++.+|.|+|||+++...+-.
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 499999999999987654433
No 359
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.99 E-value=1.7 Score=50.97 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=60.5
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccccc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAI 790 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 790 (1034)
.++.+.+++|||+|||+....-+........+.++.++. +.+.-+.++... ++..+++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~----ya~iLgv~v~~------------ 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS----YGRQLGIAVHE------------ 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHH----hhcccCceeEe------------
Confidence 577899999999999987644443333332234555443 334333332222 22223332221
Q ss_pred CCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 791 SSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 791 ~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
+.+++.+...+.. +.+.++|+||.+-....+ .... ..+..+.... ....++.++++..
T Consensus 413 ------a~d~~~L~~aL~~------l~~~DLVLIDTaG~s~~D--~~l~---eeL~~L~aa~-~~a~lLVLpAtss 470 (559)
T PRK12727 413 ------ADSAESLLDLLER------LRDYKLVLIDTAGMGQRD--RALA---AQLNWLRAAR-QVTSLLVLPANAH 470 (559)
T ss_pred ------cCcHHHHHHHHHH------hccCCEEEecCCCcchhh--HHHH---HHHHHHHHhh-cCCcEEEEECCCC
Confidence 1134445444442 345789999999765321 1111 1222221111 2345778888753
No 360
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.95 E-value=1 Score=52.57 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEE-cCCCCccc----
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVEL-TGDVTPDI---- 787 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~---- 787 (1034)
.|.-+++.|+||+|||..++-.+.....+ .+..++|+..- -=..|...++.. ...++....+ .|......
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSlE-m~~~~l~~Rl~~---~~~~v~~~~~~~~~l~~~~~~~~ 267 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSLE-MSAEQLGERLLA---SKSGINTGNIRTGRFNDSDFNRL 267 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC-CCHHHHHHHHHH---HHcCCCHHHHhcCCCCHHHHHHH
Confidence 56778999999999998766555444322 25677777621 112233333322 1122322211 22222111
Q ss_pred ----cccCCCcEEEE-----CHhhHHHHHhccccccccCcccEEEEecccccCC----CChhHHHHHHHHHHHhhhccCC
Q psy13788 788 ----QAISSASVIVT-----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE----DRGPVLEVIVSRVNFISSYTKR 854 (1034)
Q Consensus 788 ----~~~~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~----~~~~~~~~il~rl~~l~~~~~~ 854 (1034)
....+.++.|. |++.+....++.... ...+++||||=.|.+.. .....+..+...++.++.. .
T Consensus 268 ~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke--~ 343 (421)
T TIGR03600 268 LNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRK--KGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKE--L 343 (421)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHH--h
Confidence 01223445553 344444444432211 13588999999998863 2333455666777766543 3
Q ss_pred CeEEEEEccC
Q psy13788 855 NVRLVGLSTA 864 (1034)
Q Consensus 855 ~~~iv~lSAT 864 (1034)
++.++++|-.
T Consensus 344 ~i~Vi~lsQl 353 (421)
T TIGR03600 344 DVPVVLLAQL 353 (421)
T ss_pred CCcEEEeccc
Confidence 5667777754
No 361
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.87 E-value=2.4 Score=50.37 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=50.7
Q ss_pred hhHHHHHHHHhc----CC----CcEEEEcCCCChhhHHHHHHHHHHH-Hh-CCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q psy13788 701 PIQTQIFHCLYH----TD----NNVLLGAPTGSGKTIAAEITCFRVF-KQ-CPEAKVVYIAPLKALVKERVADWKVKFEA 770 (1034)
Q Consensus 701 ~~Q~~ai~~l~~----~~----~~vll~apTGsGKT~~~~l~il~~l-~~-~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~ 770 (1034)
|+|.-.+..++. .+ +.+++..|=|.|||......++-.+ .. ..+..+++++++++-+...++.+...+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 678887777762 22 3488899999999976555444333 22 34688999999999999988888765554
No 362
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.82 E-value=0.93 Score=53.68 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=18.3
Q ss_pred cEEEEcCCCChhhHHHHHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRV 738 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~ 738 (1034)
.+++.+|.|+|||.++.+.+-..
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999876654433
No 363
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.80 E-value=1.2 Score=52.51 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=56.9
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcE
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASV 795 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~I 795 (1034)
..++++|.|+|||.++.+.+....... ++ +..-+.+ ...+. .+.......+..+.+....
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~-~~-------~~~pCg~-C~~C~-~i~~~~~~Dv~eidaas~~---------- 96 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSN-GP-------TSDPCGT-CHNCI-SIKNSNHPDVIEIDAASNT---------- 96 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcC-CC-------CCCCccc-cHHHH-HHhccCCCCEEEEecccCC----------
Confidence 599999999999997765543322111 11 1000110 11111 1111123344444432111
Q ss_pred EEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 796 IVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 796 iV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
..+.+..+...........+.+++||||+|.+.. .....++..+ ...+..+.+|+.+
T Consensus 97 ---~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---~A~NaLLK~L----EePp~~v~fIlat 153 (491)
T PRK14964 97 ---SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---SAFNALLKTL----EEPAPHVKFILAT 153 (491)
T ss_pred ---CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---HHHHHHHHHH----hCCCCCeEEEEEe
Confidence 1233333333222334456788999999999874 3344444333 3344556666654
No 364
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=91.79 E-value=0.28 Score=61.37 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.4
Q ss_pred hhhHHHHhhccCCCCccccceEEEECCcc
Q psy13788 172 ILDVLQIFGRAGRPQYNTSGHATIITPHE 200 (1034)
Q Consensus 172 ~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~ 200 (1034)
+..+.|++||-.|-|.+..|.+++....+
T Consensus 522 idSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 522 IDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred HHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 56789999999999999899999888763
No 365
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.67 E-value=0.7 Score=55.36 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=27.1
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKER 760 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~ 760 (1034)
.+++.+++|+|||.......-......++.+++|+. ..+++.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-aeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-SEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHHHHHH
Confidence 489999999999975443333322223466776665 44555543
No 366
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.63 E-value=1.8 Score=43.12 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=60.3
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcE
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASV 795 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~I 795 (1034)
.+++.+|.|+||+..+...+-..+...+... .+..-.-+.+ +.....-.+..+..+.... .|
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~---~c~~c~~c~~--------~~~~~~~d~~~~~~~~~~~-------~i 82 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNED---PCGECRSCRR--------IEEGNHPDFIIIKPDKKKK-------SI 82 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT-----SSSHHHHH--------HHTT-CTTEEEEETTTSSS-------SB
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCC---CCCCCHHHHH--------HHhccCcceEEEecccccc-------hh
Confidence 4799999999999877665555544433322 1111111111 1111122233333221110 11
Q ss_pred EEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 796 IVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 796 iV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
.-+.+..+.........-...+.+|+||||.|.. .....++..| ...+.++.++++|..+.
T Consensus 83 ---~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~---~a~NaLLK~L----Eepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 83 ---KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE---EAQNALLKTL----EEPPENTYFILITNNPS 143 (162)
T ss_dssp ---SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H---HHHHHHHHHH----HSTTTTEEEEEEES-GG
T ss_pred ---hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH---HHHHHHHHHh----cCCCCCEEEEEEECChH
Confidence 2244444444333333346788999999999874 2333333333 44566788887776553
No 367
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.63 E-value=1.4 Score=51.77 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=63.7
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCC
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISS 792 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 792 (1034)
.|.-+++.+++|+|||+.....+..... .+.+++|+.-. +-..|...+.. . ++....
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~--~g~~vlYvs~E-es~~qi~~ra~-r----lg~~~~--------------- 135 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAA--AGGKVLYVSGE-ESASQIKLRAE-R----LGLPSD--------------- 135 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcc-ccHHHHHHHHH-H----cCCChh---------------
Confidence 3557889999999999866555444432 26789998853 33345444332 2 222110
Q ss_pred CcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-C------ChhHHHHHHHHHHHhhhccCCCeEEEEE
Q psy13788 793 ASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-D------RGPVLEVIVSRVNFISSYTKRNVRLVGL 861 (1034)
Q Consensus 793 ~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~------~~~~~~~il~rl~~l~~~~~~~~~iv~l 861 (1034)
++.+.....+..+..... -.+.+++|+|+++.+.. . ....++.++..+..+... .++.+++.
T Consensus 136 -~l~~~~e~~l~~i~~~i~----~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~--~~itvilv 204 (446)
T PRK11823 136 -NLYLLAETNLEAILATIE----EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQ--RGIAVFLV 204 (446)
T ss_pred -cEEEeCCCCHHHHHHHHH----hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEE
Confidence 122332223333333211 13578999999997743 1 123455555555544333 24445554
No 368
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.61 E-value=3.6 Score=48.29 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=31.1
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWKV 766 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~~ 766 (1034)
.+.-+.+.+|||+|||++....+-.......+.++.++. +.+.-+.++...|.+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~Ae 310 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGK 310 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHH
Confidence 356688999999999987655444333332223444333 334445555555543
No 369
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=1.6 Score=49.53 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEE
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYI 750 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi 750 (1034)
..|+++.+|||+|||.+...-+-+.....+...++||
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yI 78 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYI 78 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEE
Confidence 3579999999999998765544333322223324554
No 370
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.50 E-value=1.2 Score=50.64 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt 753 (1034)
...+++.+|+|+|||-......-......+..+++|+..-
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 3569999999999998655555555555566777777654
No 371
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.47 E-value=0.41 Score=48.50 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=29.0
Q ss_pred hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHH
Q psy13788 711 YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKE 759 (1034)
Q Consensus 711 ~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q 759 (1034)
.+.+.++++.+|+|+|||..+...+...+.. +..++| ++..+|+.+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f-~~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLF-ITASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEE-EEHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeE-eecCceecc
Confidence 3467899999999999998766655554442 555655 455666654
No 372
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.46 E-value=0.83 Score=54.81 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=26.8
Q ss_pred cCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccC
Q psy13788 816 VQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTA 864 (1034)
Q Consensus 816 l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSAT 864 (1034)
..+.+++||||+|.|.. .....+++.| ...+.++.+|+.|.-
T Consensus 122 ~gr~KViIIDEah~Ls~---~AaNALLKTL----EEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTN---HAFNAMLKTL----EEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCH---HHHHHHHHhh----ccCCCCceEEEEeCC
Confidence 45678999999999974 3334444333 334456777777653
No 373
>PRK07004 replicative DNA helicase; Provisional
Probab=91.45 E-value=1.1 Score=52.89 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc---CcHHHHHHHHHHHHHHhhhhcCCeEEEE-cCCCCccc-
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA---PLKALVKERVADWKVKFEARLKKKVVEL-TGDVTPDI- 787 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~---Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~- 787 (1034)
.|.-+++.|.||+|||..++--+...... .+..++|.+ |..+|+ .++.... .++....+ .|....+.
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM~~~ql~----~R~la~~---~~v~~~~i~~g~l~~~e~ 283 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEMPGTQLA----MRMLGSV---GRLDQHRMRTGRLTDEDW 283 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHH----HHHHHhh---cCCCHHHHhcCCCCHHHH
Confidence 56778999999999998665544443322 255666665 333333 3332211 12222111 23222211
Q ss_pred -------cccCCCcEEE-----ECHhhHHHHHhccccccccCcccEEEEecccccCC-----CChhHHHHHHHHHHHhhh
Q psy13788 788 -------QAISSASVIV-----TTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-----DRGPVLEVIVSRVNFISS 850 (1034)
Q Consensus 788 -------~~~~~~~IiV-----~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-----~~~~~~~~il~rl~~l~~ 850 (1034)
..+.+.++.| .|+..+....++.... ...+++||||=.+.+.. .+...+..+...++.++.
T Consensus 284 ~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~--~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAk 361 (460)
T PRK07004 284 PKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQ--CGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAK 361 (460)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 1123456665 3455554444432211 23579999999999863 233456777778877754
Q ss_pred ccCCCeEEEEEcc
Q psy13788 851 YTKRNVRLVGLST 863 (1034)
Q Consensus 851 ~~~~~~~iv~lSA 863 (1034)
.+ +++++++|-
T Consensus 362 el--~ipVi~lsQ 372 (460)
T PRK07004 362 EL--DVPVIALSQ 372 (460)
T ss_pred Hh--CCeEEEEec
Confidence 43 677888875
No 374
>PRK05748 replicative DNA helicase; Provisional
Probab=91.44 E-value=0.95 Score=53.37 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE-EEcCCCCcccc---
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV-ELTGDVTPDIQ--- 788 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~-~~~g~~~~~~~--- 788 (1034)
.|.-++|.|+||+|||..++--+.....+ .+..++|+..- .-..|+..++....+ ++... ...|.......
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlE-ms~~~l~~R~l~~~~---~v~~~~i~~~~l~~~e~~~~ 276 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLE-MGAESLVMRMLCAEG---NIDAQRLRTGQLTDDDWPKL 276 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCC-CCHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHHHHH
Confidence 56779999999999998666555444322 25566666522 223344444432222 22211 11232222111
Q ss_pred -----ccCCCcEEEE-----CHhhHHHHHhccccccccCcccEEEEecccccCC-C-----ChhHHHHHHHHHHHhhhcc
Q psy13788 789 -----AISSASVIVT-----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-D-----RGPVLEVIVSRVNFISSYT 852 (1034)
Q Consensus 789 -----~~~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~-----~~~~~~~il~rl~~l~~~~ 852 (1034)
...+.++.|. |++.+....++..... ..+++||||=.+.+.. . +...+..+...++.++..+
T Consensus 277 ~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~--~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~ 354 (448)
T PRK05748 277 TIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEH--GGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKEL 354 (448)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc--CCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 1223445553 4555544444332211 2689999999999852 1 2234556777777665443
Q ss_pred CCCeEEEEEccCC
Q psy13788 853 KRNVRLVGLSTAL 865 (1034)
Q Consensus 853 ~~~~~iv~lSATl 865 (1034)
++.++++|-.-
T Consensus 355 --~i~vi~lsQln 365 (448)
T PRK05748 355 --KVPVIALSQLS 365 (448)
T ss_pred --CCeEEEecccC
Confidence 56788887653
No 375
>PRK05636 replicative DNA helicase; Provisional
Probab=91.43 E-value=1.3 Score=52.60 Aligned_cols=138 Identities=15% Similarity=0.236 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc---CcHHHHHHHHHHHHHHhhhhcCCeEEEE-cCCCCcccc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA---PLKALVKERVADWKVKFEARLKKKVVEL-TGDVTPDIQ 788 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~---Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~ 788 (1034)
.|.-+++.|.||+|||..++-.+.....+ .+..++|.. |..+|+. ++.... .++....+ .|..+.+..
T Consensus 264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~-~g~~v~~fSlEMs~~ql~~----R~ls~~---s~v~~~~i~~g~l~~~e~ 335 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLALDFMRSASIK-HNKASVIFSLEMSKSEIVM----RLLSAE---AEVRLSDMRGGKMDEDAW 335 (505)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEeeCCHHHHHH----HHHHHh---cCCCHHHHhcCCCCHHHH
Confidence 56668899999999998665444433322 245666663 3334433 332211 12221111 222221110
Q ss_pred --------ccCCCcEEEE-----CHhhHHHHHhccccccccCcccEEEEecccccCCC-----ChhHHHHHHHHHHHhhh
Q psy13788 789 --------AISSASVIVT-----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED-----RGPVLEVIVSRVNFISS 850 (1034)
Q Consensus 789 --------~~~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~-----~~~~~~~il~rl~~l~~ 850 (1034)
.+.+.++.|- |...+....++.... ..+++||||=.|.+... +...+..+...|+.++.
T Consensus 336 ~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~---~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAk 412 (505)
T PRK05636 336 EKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQK---HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAK 412 (505)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 1234455553 344444444432221 35899999999999631 22456677778877755
Q ss_pred ccCCCeEEEEEcc
Q psy13788 851 YTKRNVRLVGLST 863 (1034)
Q Consensus 851 ~~~~~~~iv~lSA 863 (1034)
. -++.+|++|-
T Consensus 413 e--l~ipVi~lsQ 423 (505)
T PRK05636 413 E--LDVPLIAISQ 423 (505)
T ss_pred H--hCCeEEEEee
Confidence 4 3677888874
No 376
>PRK08506 replicative DNA helicase; Provisional
Probab=91.40 E-value=1.1 Score=53.07 Aligned_cols=142 Identities=16% Similarity=0.236 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEE-cCCCCcccc---
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVEL-TGDVTPDIQ--- 788 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~--- 788 (1034)
.|.-+++.|+||.|||..++-.+.+...+ +..++|+..- .=..|...++.... .++....+ .|.......
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~--g~~V~~fSlE-Ms~~ql~~Rlla~~---s~v~~~~i~~~~l~~~e~~~~ 264 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQ--DKGVAFFSLE-MPAEQLMLRMLSAK---TSIPLQNLRTGDLDDDEWERL 264 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhc--CCcEEEEeCc-CCHHHHHHHHHHHh---cCCCHHHHhcCCCCHHHHHHH
Confidence 56678999999999998776666555432 5667776532 22334444443221 22222111 232222111
Q ss_pred -----ccCCCcEEEE-----CHhhHHHHHhccccccccCcccEEEEecccccCC-----CChhHHHHHHHHHHHhhhccC
Q psy13788 789 -----AISSASVIVT-----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-----DRGPVLEVIVSRVNFISSYTK 853 (1034)
Q Consensus 789 -----~~~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-----~~~~~~~~il~rl~~l~~~~~ 853 (1034)
.+.+.++.|- |++.+....+++... ...+++||||=.+.+.. .+...+..+...++.++..+
T Consensus 265 ~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~--~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel- 341 (472)
T PRK08506 265 SDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQ--HPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLAREL- 341 (472)
T ss_pred HHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHh-
Confidence 1223445542 455555555543221 23589999999998853 12334556666777665443
Q ss_pred CCeEEEEEccC
Q psy13788 854 RNVRLVGLSTA 864 (1034)
Q Consensus 854 ~~~~iv~lSAT 864 (1034)
+++++++|-.
T Consensus 342 -~ipVi~lsQL 351 (472)
T PRK08506 342 -DIPIIALSQL 351 (472)
T ss_pred -CCcEEEEeec
Confidence 5678888753
No 377
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.38 E-value=0.73 Score=49.62 Aligned_cols=67 Identities=21% Similarity=0.271 Sum_probs=44.9
Q ss_pred ccCCCChhHHHHHHHH------hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHH
Q psy13788 695 KFSHFNPIQTQIFHCL------YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADW 764 (1034)
Q Consensus 695 ~~~~~~~~Q~~ai~~l------~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~ 764 (1034)
+|......+.+++..+ ++++.++++.+|+|+|||..+........ + .+.-++.+++.+|+.+....+
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K--AGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H--cCCeEEEEEHHHHHHHHHHHH
Confidence 3444455566655433 34678999999999999987766555555 3 355666678888887754433
No 378
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.33 E-value=0.83 Score=51.25 Aligned_cols=124 Identities=19% Similarity=0.163 Sum_probs=58.8
Q ss_pred CCc-EEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCC
Q psy13788 714 DNN-VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISS 792 (1034)
Q Consensus 714 ~~~-vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 792 (1034)
..+ +++.+|.|+|||.++...+-..+...+......... ..+. .+.......+..+...... .
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~--~~~~--------~~~~~~~~d~lel~~s~~~------~ 86 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC--RSCK--------LIPAGNHPDFLELNPSDLR------K 86 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch--hhhh--------HHhhcCCCceEEecccccC------C
Confidence 456 999999999999976655544432221100000000 1111 1111112233333322111 1
Q ss_pred CcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEcc
Q psy13788 793 ASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLST 863 (1034)
Q Consensus 793 ~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSA 863 (1034)
.+ ...+.+..+.+...........+++|+||||.|..+-+..+...+ ...+.+.++++.+-
T Consensus 87 ~~---i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~l-------Eep~~~~~~il~~n 147 (325)
T COG0470 87 ID---IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTL-------EEPPKNTRFILITN 147 (325)
T ss_pred Cc---chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHh-------ccCCCCeEEEEEcC
Confidence 12 233444444443222333467889999999999753222222222 34456666666654
No 379
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.31 E-value=1.4 Score=50.33 Aligned_cols=40 Identities=13% Similarity=0.373 Sum_probs=24.5
Q ss_pred cCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 816 VQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 816 l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
....+++|+||+|.+.. .....++..+ ...+..+++|+.+
T Consensus 117 ~~~~kviIIDEa~~l~~---~a~naLLk~l----Ee~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSR---HSFNALLKTL----EEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCH---HHHHHHHHHH----hcCCCCeEEEEEc
Confidence 45678999999999874 2334444333 2334556666654
No 380
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=91.28 E-value=0.65 Score=57.69 Aligned_cols=127 Identities=13% Similarity=0.188 Sum_probs=72.1
Q ss_pred EEEEEccCCCC-HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEec
Q psy13788 857 RLVGLSTALAN-AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVS 935 (1034)
Q Consensus 857 ~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~ 935 (1034)
++.|||+|... ..++.+..++. ++. -|..+|..- ...+..-|..........+.+....+..+.|+||-|.
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~---v~~-iPt~kp~~r----~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~ 576 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLY---VLQ-VPTFKPCLR----IDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTE 576 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC---EEE-CCCCCCcee----eeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 57899999855 34454444432 222 333444221 1223333333333333334444555678899999999
Q ss_pred ChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCC
Q psy13788 936 SRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKE 1015 (1034)
Q Consensus 936 s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~ 1015 (1034)
|++..+.++..|..... + ..++++.-...+-..|. ..|+
T Consensus 577 si~~se~ls~~L~~~gi----~------------------------------h~vLNak~~~~Ea~iia-------~AG~ 615 (970)
T PRK12899 577 SVEVSEKLSRILRQNRI----E------------------------------HTVLNAKNHAQEAEIIA-------GAGK 615 (970)
T ss_pred cHHHHHHHHHHHHHcCC----c------------------------------ceecccchhhhHHHHHH-------hcCC
Confidence 99988887776654211 1 12344442333334442 3344
Q ss_pred -ceEEEechhhhhccCCCC
Q psy13788 1016 -NQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1016 -i~VLVaT~~l~~Gv~Dfs 1033 (1034)
-.|.|||+.++||- |+.
T Consensus 616 ~g~VTIATNmAGRGT-DIk 633 (970)
T PRK12899 616 LGAVTVATNMAGRGT-DIK 633 (970)
T ss_pred CCcEEEeeccccCCc-ccc
Confidence 46899999999999 973
No 381
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.26 E-value=0.33 Score=54.53 Aligned_cols=52 Identities=29% Similarity=0.390 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHH
Q psy13788 703 QTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALV 757 (1034)
Q Consensus 703 Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~ 757 (1034)
..+.+..+...+.++++++|||||||+.. -+++..+. +..+++.+-.+.||.
T Consensus 151 ~~~~l~~~v~~~~nilI~G~tGSGKTTll-~aLl~~i~--~~~rivtiEd~~El~ 202 (344)
T PRK13851 151 LEAFLHACVVGRLTMLLCGPTGSGKTTMS-KTLISAIP--PQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHHHcCCeEEEECCCCccHHHHH-HHHHcccC--CCCCEEEECCCcccc
Confidence 44555555668899999999999999843 22333332 356788888888764
No 382
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.23 E-value=1.5 Score=49.36 Aligned_cols=129 Identities=19% Similarity=0.285 Sum_probs=65.1
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccccc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAI 790 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 790 (1034)
.++.+++++|||+|||+...--+.....+ +.++.++. |.|.=+.++...+. +.+++.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~ya----e~lgvpv~------------- 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYA----DKLDVELI------------- 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHh----hcCCCCEE-------------
Confidence 46778999999999997665544443333 44555444 44443333333332 22333221
Q ss_pred CCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHH
Q psy13788 791 SSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKD 870 (1034)
Q Consensus 791 ~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~ 870 (1034)
+..+|+.+...+.... ...+.++|++|=+=+...+ ...+ ..+..+.....+..-++.+||+.. ..+
T Consensus 266 -----~~~dp~dL~~al~~l~---~~~~~D~VLIDTAGr~~~d-~~~l----~EL~~l~~~~~p~~~~LVLsag~~-~~d 331 (407)
T PRK12726 266 -----VATSPAELEEAVQYMT---YVNCVDHILIDTVGRNYLA-EESV----SEISAYTDVVHPDLTCFTFSSGMK-SAD 331 (407)
T ss_pred -----ecCCHHHHHHHHHHHH---hcCCCCEEEEECCCCCccC-HHHH----HHHHHHhhccCCceEEEECCCccc-HHH
Confidence 1235666644443211 1245789999988665421 1222 222222233333444566777653 334
Q ss_pred HHhH
Q psy13788 871 LATW 874 (1034)
Q Consensus 871 l~~~ 874 (1034)
+.+.
T Consensus 332 ~~~i 335 (407)
T PRK12726 332 VMTI 335 (407)
T ss_pred HHHH
Confidence 4443
No 383
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.11 E-value=0.78 Score=53.43 Aligned_cols=19 Identities=42% Similarity=0.698 Sum_probs=15.9
Q ss_pred CcEEEEcCCCChhhHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l 733 (1034)
.++++.+|+|+|||..+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3799999999999986544
No 384
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.11 E-value=1.3 Score=53.71 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=27.3
Q ss_pred ccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 813 RNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 813 ~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
.......+++||||+|.+.. .....++..+ ...+..+.+|+.+
T Consensus 127 ~P~~a~~KVvIIDEad~Ls~---~a~naLLKtL----EePp~~~~fIl~t 169 (598)
T PRK09111 127 RPVSARYKVYIIDEVHMLST---AAFNALLKTL----EEPPPHVKFIFAT 169 (598)
T ss_pred chhcCCcEEEEEEChHhCCH---HHHHHHHHHH----HhCCCCeEEEEEe
Confidence 34456788999999999974 3344444333 2344566677655
No 385
>KOG0332|consensus
Probab=91.09 E-value=3.1 Score=45.70 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=35.9
Q ss_pred ccccchhhhccCcccce-EEEecCceeec-CCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcc
Q psy13788 134 RTASNYYIKHNDIELFT-EHMTKGTEMYN-AKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE 200 (1034)
Q Consensus 134 ~~~~~~~~~~~gvn~pa-~vii~~~~~~~-~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~ 200 (1034)
+++.|--++ -|++.+. .+||- || |-.-. ..=+...|+.++||+||-|- .|.+|=+.+.+
T Consensus 383 VLitTnV~A-RGiDv~qVs~VvN----ydlP~~~~-~~pD~etYlHRiGRtGRFGk--kG~a~n~v~~~ 443 (477)
T KOG0332|consen 383 VLITTNVCA-RGIDVAQVSVVVN----YDLPVKYT-GEPDYETYLHRIGRTGRFGK--KGLAINLVDDK 443 (477)
T ss_pred EEEEechhh-cccccceEEEEEe----cCCccccC-CCCCHHHHHHHhcccccccc--cceEEEeeccc
Confidence 333333333 4677775 55553 44 11100 11345889999999999876 78888887764
No 386
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.08 E-value=0.39 Score=49.15 Aligned_cols=53 Identities=25% Similarity=0.458 Sum_probs=37.3
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt 753 (1034)
.+++-|.+.+......+.++++++|||||||+..-. ++..+. +..+++.+--.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~a-L~~~i~--~~~~~i~ied~ 61 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNA-LLAFIP--PDERIITIEDT 61 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHH-HHhhcC--CCCCEEEECCc
Confidence 477889999988887899999999999999985422 333332 34455555433
No 387
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.97 E-value=3.2 Score=44.19 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=29.3
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt 753 (1034)
.|.-+++.+++|+|||..+...+...+.+ +.+++|+.--
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e 62 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTE 62 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcC
Confidence 45678899999999998776666655543 7788888743
No 388
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.93 E-value=2 Score=48.96 Aligned_cols=119 Identities=15% Similarity=0.197 Sum_probs=62.6
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCC
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISS 792 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 792 (1034)
.|.-+++.+++|+|||+..+..+...... +.+++|+.-... ..|...+.. . ++...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs-~~qi~~Ra~-r----lg~~~---------------- 136 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES-PEQIKLRAD-R----LGIST---------------- 136 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC-HHHHHHHHH-H----cCCCc----------------
Confidence 35668999999999998665554443332 578999875422 344333322 1 22211
Q ss_pred CcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-C------ChhHHHHHHHHHHHhhhccCCCeEEEEE
Q psy13788 793 ASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-D------RGPVLEVIVSRVNFISSYTKRNVRLVGL 861 (1034)
Q Consensus 793 ~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~------~~~~~~~il~rl~~l~~~~~~~~~iv~l 861 (1034)
.++.+.....+..+..... -.+.++||||+++.+.. . ...+++.++.++..+.... ++.+++.
T Consensus 137 ~~l~l~~e~~le~I~~~i~----~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~--~itvilv 206 (372)
T cd01121 137 ENLYLLAETNLEDILASIE----ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKER--NIPIFIV 206 (372)
T ss_pred ccEEEEccCcHHHHHHHHH----hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHc--CCeEEEE
Confidence 0122222222332322111 13578999999998742 1 1244566666665554433 4445544
No 389
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.91 E-value=1.1 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=17.5
Q ss_pred EEEEcCCCChhhHHHHHHHHHH
Q psy13788 717 VLLGAPTGSGKTIAAEITCFRV 738 (1034)
Q Consensus 717 vll~apTGsGKT~~~~l~il~~ 738 (1034)
+++.+|.|+|||.++...+-..
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999876654333
No 390
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.90 E-value=1.1 Score=53.34 Aligned_cols=39 Identities=15% Similarity=0.364 Sum_probs=25.4
Q ss_pred CcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 817 QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 817 ~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
.+.+++||||+|.|.. .....++..+ ...+..+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~---~a~naLLk~L----Eepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSG---HSFNALLKTL----EEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCH---HHHHHHHHHH----hccCCCeEEEEEE
Confidence 4678999999999874 3344444333 3345567777665
No 391
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.88 E-value=1.1 Score=54.04 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=17.2
Q ss_pred cEEEEcCCCChhhHHHHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFR 737 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~ 737 (1034)
-+++.+|.|+|||.++.+.+-.
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999877655443
No 392
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.79 E-value=1.3 Score=53.82 Aligned_cols=22 Identities=36% Similarity=0.379 Sum_probs=17.3
Q ss_pred cEEEEcCCCChhhHHHHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFR 737 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~ 737 (1034)
.+++.+|.|+|||.++...+-.
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4799999999999877654433
No 393
>KOG0333|consensus
Probab=90.72 E-value=1.9 Score=49.40 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=33.3
Q ss_pred Ccccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCccc
Q psy13788 145 DIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEK 201 (1034)
Q Consensus 145 gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~ 201 (1034)
||+.|- +.||- || ..=++-||..++||.||+|- +|.++-+...++
T Consensus 580 GIDIpnVSlVin----yd------maksieDYtHRIGRTgRAGk--~GtaiSflt~~d 625 (673)
T KOG0333|consen 580 GIDIPNVSLVIN----YD------MAKSIEDYTHRIGRTGRAGK--SGTAISFLTPAD 625 (673)
T ss_pred CCCCCccceeee----cc------hhhhHHHHHHHhcccccccc--CceeEEEeccch
Confidence 788885 44442 54 22346899999999999997 888888777654
No 394
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=90.70 E-value=1.7 Score=51.13 Aligned_cols=142 Identities=17% Similarity=0.183 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE-EcCCCCccc----
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE-LTGDVTPDI---- 787 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~-~~g~~~~~~---- 787 (1034)
.|.-+++.|+||+|||..++--+.+.... .+..++|++.-- =..|...++.... .++.... ..|......
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~SlEm-~~~~i~~R~~~~~---~~v~~~~~~~g~l~~~~~~~~ 268 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIK-EGKPVAFFSLEM-SAEQLAMRMLSSE---SRVDSQKLRTGKLSDEDWEKL 268 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEeCcC-CHHHHHHHHHHHh---cCCCHHHhccCCCCHHHHHHH
Confidence 56778999999999998665555544332 256677776321 1223333333211 1222111 122222111
Q ss_pred ----cccCCCcEEE-----ECHhhHHHHHhccccccccCcccEEEEecccccCC-C----ChhHHHHHHHHHHHhhhccC
Q psy13788 788 ----QAISSASVIV-----TTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-D----RGPVLEVIVSRVNFISSYTK 853 (1034)
Q Consensus 788 ----~~~~~~~IiV-----~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~----~~~~~~~il~rl~~l~~~~~ 853 (1034)
....+.++.| .|++.+...++..... ..+++||||=.+.+.. . +...+..+...++.+...+
T Consensus 269 ~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~---~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~- 344 (434)
T TIGR00665 269 TSAAGKLSEAPLYIDDTPGLTITELRAKARRLKRE---HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKEL- 344 (434)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHh-
Confidence 0122334444 2445554444432221 3479999999998853 2 2234556667777665443
Q ss_pred CCeEEEEEccC
Q psy13788 854 RNVRLVGLSTA 864 (1034)
Q Consensus 854 ~~~~iv~lSAT 864 (1034)
++.++++|-.
T Consensus 345 -~i~vi~lsql 354 (434)
T TIGR00665 345 -NVPVIALSQL 354 (434)
T ss_pred -CCeEEEEecc
Confidence 5667777753
No 395
>PRK09165 replicative DNA helicase; Provisional
Probab=90.69 E-value=1.7 Score=51.64 Aligned_cols=142 Identities=13% Similarity=0.195 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhC-------------CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE-
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQC-------------PEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE- 778 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~-------------~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~- 778 (1034)
.|.-++|.|+||+|||..++--+.....+. .+..++|+..- .=..|...++.... .++....
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~---s~v~~~~i 291 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQ---SEISSSKI 291 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHh---cCCCHHHH
Confidence 566789999999999987655444443321 24567777532 22234444443211 2232211
Q ss_pred EcCCCCccc--------cccCCCcEEEE-----CHhhHHHHHhccccccccCcccEEEEecccccCCC-------ChhHH
Q psy13788 779 LTGDVTPDI--------QAISSASVIVT-----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED-------RGPVL 838 (1034)
Q Consensus 779 ~~g~~~~~~--------~~~~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~-------~~~~~ 838 (1034)
..|....+. ..+...++.|- |++.+....++... -..+++||||=.|.+... +...+
T Consensus 292 ~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~---~~~~~lvvIDyLqli~~~~~~~~~~r~~ev 368 (497)
T PRK09165 292 RRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR---QHGLDLLVVDYLQLIRGSSKRSSDNRVQEI 368 (497)
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEcchHhccCCCCCCCCchHHHH
Confidence 122222111 01223445543 45555444443322 135899999999988531 12346
Q ss_pred HHHHHHHHHhhhccCCCeEEEEEcc
Q psy13788 839 EVIVSRVNFISSYTKRNVRLVGLST 863 (1034)
Q Consensus 839 ~~il~rl~~l~~~~~~~~~iv~lSA 863 (1034)
..+...++.++.. -++.++++|-
T Consensus 369 ~~is~~LK~lAke--l~ipVi~lsQ 391 (497)
T PRK09165 369 SEITQGLKALAKE--LNIPVIALSQ 391 (497)
T ss_pred HHHHHHHHHHHHH--hCCeEEEeec
Confidence 6677777766543 3677787775
No 396
>KOG0353|consensus
Probab=90.66 E-value=0.76 Score=49.79 Aligned_cols=42 Identities=31% Similarity=0.344 Sum_probs=26.6
Q ss_pred ccccEEEEeeeecccC-C--CCchHHHHHHhhhhccccceeecccc
Q psy13788 6 ELVKLLIIDEVHLLHG-D--RGPVIEALVARTLRQIGQEVFKGVKS 48 (1034)
Q Consensus 6 ~~v~~vViDEvH~l~d-~--RG~~le~li~~~~~~~~~~~~~~~~~ 48 (1034)
.-.+++-|||||-... + =.+-...| .-+.|+.+..-+||+++
T Consensus 214 ~~~~~iaidevhccsqwghdfr~dy~~l-~ilkrqf~~~~iiglta 258 (695)
T KOG0353|consen 214 GFFKLIAIDEVHCCSQWGHDFRPDYKAL-GILKRQFKGAPIIGLTA 258 (695)
T ss_pred ceeEEEeecceeehhhhCcccCcchHHH-HHHHHhCCCCceeeeeh
Confidence 4567899999998864 2 22222222 22256777788999876
No 397
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=90.60 E-value=1 Score=52.62 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=26.5
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~ 758 (1034)
..+++.+|+|+|||...... ...+.+ .+.+++|+.. ..+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai-~~~l~~-~~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAA-VHALRE-SGGKILYVRS-ELFTE 182 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHH-HHHHHH-cCCCEEEeeH-HHHHH
Confidence 45899999999999865533 333333 2677777754 34443
No 398
>PRK08116 hypothetical protein; Validated
Probab=90.58 E-value=1.9 Score=46.80 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=26.6
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKE 759 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q 759 (1034)
.+++.+++|+|||..+.. +.+.+... +..++|+ +..+++.+
T Consensus 116 gl~l~G~~GtGKThLa~a-ia~~l~~~-~~~v~~~-~~~~ll~~ 156 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAAC-IANELIEK-GVPVIFV-NFPQLLNR 156 (268)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHHc-CCeEEEE-EHHHHHHH
Confidence 499999999999986654 44444443 4555544 45555554
No 399
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.51 E-value=0.61 Score=49.46 Aligned_cols=39 Identities=15% Similarity=0.355 Sum_probs=29.3
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt 753 (1034)
.+.-+++.+|+|+|||+.+.-.+...+.+ +.+++|+...
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e 61 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQ 61 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCC
Confidence 57789999999999999765555554443 6788888843
No 400
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.47 E-value=2 Score=52.54 Aligned_cols=40 Identities=18% Similarity=0.383 Sum_probs=25.1
Q ss_pred CcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEcc
Q psy13788 817 QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLST 863 (1034)
Q Consensus 817 ~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSA 863 (1034)
.+.+++||||+|.|.. ..+..+++.| ...+.++++|+.|.
T Consensus 118 gr~KVIIIDEah~LT~---~A~NALLKtL----EEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTN---HAFNAMLKTL----EEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCH---HHHHHHHHHH----HhcCCCeEEEEEEC
Confidence 4678999999999974 2344444433 23345666666654
No 401
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=90.43 E-value=2.2 Score=54.33 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=27.8
Q ss_pred cCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCcccc
Q psy13788 144 NDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTS 190 (1034)
Q Consensus 144 ~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~ 190 (1034)
-|+|++. .||. || -+-++..|.|++||+||-|-...
T Consensus 558 eGlNlq~a~~VIn-----fD------lP~nP~~~eQRIGR~~RiGQ~~~ 595 (956)
T PRK04914 558 EGRNFQFASHLVL-----FD------LPFNPDLLEQRIGRLDRIGQKHD 595 (956)
T ss_pred cCCCcccccEEEE-----ec------CCCCHHHHHHHhcccccCCCCce
Confidence 3899995 4553 66 45678999999999999998543
No 402
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=90.34 E-value=2.9 Score=46.45 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=30.6
Q ss_pred CCCChhHHHHHHHHhc---CCC---cEEEEcCCCChhhHHHHHHHHHHH
Q psy13788 697 SHFNPIQTQIFHCLYH---TDN---NVLLGAPTGSGKTIAAEITCFRVF 739 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~~---~~~---~vll~apTGsGKT~~~~l~il~~l 739 (1034)
+.+.|+|..++..+.+ +++ -+++.+|.|.||+..+..-+-..+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL 51 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh
Confidence 3488899999877643 333 388999999999987655444433
No 403
>KOG0336|consensus
Probab=90.32 E-value=1.8 Score=47.91 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=34.7
Q ss_pred cCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 144 NDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 144 ~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
-|+++|- +.|+ -|| -+..+.+|-.++||.||.|- .|+++-+....++.....
T Consensus 527 RGlDv~DiTHV~----NyD------FP~nIeeYVHRvGrtGRaGr--~G~sis~lt~~D~~~a~e 579 (629)
T KOG0336|consen 527 RGLDVPDITHVY----NYD------FPRNIEEYVHRVGRTGRAGR--TGTSISFLTRNDWSMAEE 579 (629)
T ss_pred cCCCchhcceee----ccC------CCccHHHHHHHhcccccCCC--CcceEEEEehhhHHHHHH
Confidence 4788885 4342 244 24567999999999999987 687776666544443333
No 404
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.30 E-value=1.1 Score=54.25 Aligned_cols=55 Identities=11% Similarity=0.178 Sum_probs=30.3
Q ss_pred hhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 801 EKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 801 e~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
+.+..+........+...-+++||||+|.+.. .....++..+ ...+..+.+|+.+
T Consensus 110 d~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---~a~naLLK~L----EePp~~tv~IL~t 164 (620)
T PRK14954 110 DDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---AAFNAFLKTL----EEPPPHAIFIFAT 164 (620)
T ss_pred HHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---HHHHHHHHHH----hCCCCCeEEEEEe
Confidence 44444433322334566778999999999874 2334444333 2333445566555
No 405
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.27 E-value=1.1 Score=55.60 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=24.3
Q ss_pred CcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEE
Q psy13788 817 QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGL 861 (1034)
Q Consensus 817 ~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~l 861 (1034)
.+.+++||||||.|.. .....+++.+ ...+..+++|+.
T Consensus 118 gk~KViIIDEAh~LT~---eAqNALLKtL----EEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR---SSFNALLKTL----EEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCH---HHHHHHHHHH----hccCCCeEEEEE
Confidence 4678999999999963 3344444333 334456677665
No 406
>PRK06904 replicative DNA helicase; Validated
Probab=90.12 E-value=1.6 Score=51.51 Aligned_cols=143 Identities=16% Similarity=0.208 Sum_probs=77.2
Q ss_pred cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEE-cC-CCCcccc-
Q psy13788 712 HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVEL-TG-DVTPDIQ- 788 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g-~~~~~~~- 788 (1034)
+.|.=+++.|.||+|||..++-.+...... .+..++|++.- -=..|+..++.... .++....+ .| ....+..
T Consensus 219 ~~G~LiiIaarPg~GKTafalnia~~~a~~-~g~~Vl~fSlE-Ms~~ql~~Rlla~~---s~v~~~~i~~g~~l~~~e~~ 293 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFAMNLCENAAMA-SEKPVLVFSLE-MPAEQIMMRMLASL---SRVDQTKIRTGQNLDQQDWA 293 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEecc-CCHHHHHHHHHHhh---CCCCHHHhccCCCCCHHHHH
Confidence 366678899999999998654333333322 25667776532 22334444443322 22222211 23 2221110
Q ss_pred -------cc-CCCcEEE-----ECHhhHHHHHhccccccccCcccEEEEecccccCC-----CChhHHHHHHHHHHHhhh
Q psy13788 789 -------AI-SSASVIV-----TTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-----DRGPVLEVIVSRVNFISS 850 (1034)
Q Consensus 789 -------~~-~~~~IiV-----~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-----~~~~~~~~il~rl~~l~~ 850 (1034)
.+ ...++.| .|+..+....++... ....+++||||=.+++.. .+...+..+...++.++.
T Consensus 294 ~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~--~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAk 371 (472)
T PRK06904 294 KISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYR--ENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAK 371 (472)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH--hCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 11 2334555 355555544443221 113589999999998853 233456777778877754
Q ss_pred ccCCCeEEEEEcc
Q psy13788 851 YTKRNVRLVGLST 863 (1034)
Q Consensus 851 ~~~~~~~iv~lSA 863 (1034)
.+ ++++|++|-
T Consensus 372 el--~ipVi~lsQ 382 (472)
T PRK06904 372 EL--KVPVVALSQ 382 (472)
T ss_pred Hh--CCeEEEEEe
Confidence 43 677888874
No 407
>KOG1131|consensus
Probab=90.10 E-value=1.5 Score=50.09 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=52.9
Q ss_pred ccccccCCCChhHHHHHHHH---hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHH
Q psy13788 691 ESLYKFSHFNPIQTQIFHCL---YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--PEAKVVYIAPLKALVKERVADWK 765 (1034)
Q Consensus 691 ~~~~~~~~~~~~Q~~ai~~l---~~~~~~vll~apTGsGKT~~~~l~il~~l~~~--~~~~~lvi~Pt~~L~~q~~~~~~ 765 (1034)
.-+|++....|-|-+-...+ +..+.+.++.+|+|+|||.+-+--++..-... ...+.+|..-|..=++....+++
T Consensus 9 ~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 9 LVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred eEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHH
Confidence 34678888889998865433 45678999999999999987655555443333 35788998877665555555554
Q ss_pred H
Q psy13788 766 V 766 (1034)
Q Consensus 766 ~ 766 (1034)
.
T Consensus 89 ~ 89 (755)
T KOG1131|consen 89 R 89 (755)
T ss_pred H
Confidence 3
No 408
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.09 E-value=2 Score=48.01 Aligned_cols=19 Identities=42% Similarity=0.663 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChhhHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l 733 (1034)
.++++.+|+|+|||.++..
T Consensus 39 ~~~ll~G~~G~GKt~~~~~ 57 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALA 57 (319)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3699999999999986544
No 409
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.06 E-value=4.1 Score=47.07 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=29.3
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWK 765 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~ 765 (1034)
-+++++++|+|||+++.--+.. +.. .+.+++++. |.|.-+.++.+.+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~~-~G~kV~lV~~D~~R~aA~eQLk~~a 151 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQR-KGFKPCLVCADTFRAGAFDQLKQNA 151 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH-CCCCEEEEcCcccchhHHHHHHHHh
Confidence 4789999999998765443332 222 355666665 45655555555444
No 410
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=90.05 E-value=0.74 Score=47.72 Aligned_cols=19 Identities=42% Similarity=0.649 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChhhHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l 733 (1034)
.++++.+|+|.|||..+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 4699999999999985433
No 411
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.04 E-value=0.73 Score=51.04 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~ 758 (1034)
.|+-+.+.+|+|+|||..++-.+...... +.+++|+-.-.++-.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHH
Confidence 45668899999999999877666655443 788888876554443
No 412
>PRK08760 replicative DNA helicase; Provisional
Probab=90.00 E-value=1.5 Score=51.86 Aligned_cols=142 Identities=16% Similarity=0.190 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE-EcCCCCccc----
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE-LTGDVTPDI---- 787 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~-~~g~~~~~~---- 787 (1034)
.|.-++|.|+||+|||..++--+.....+ .+..++|.+.-- =..|+..++..... ++.... ..|......
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlEM-s~~ql~~Rl~a~~s---~i~~~~i~~g~l~~~e~~~~ 302 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSMEM-SASQLAMRLISSNG---RINAQRLRTGALEDEDWARV 302 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEeccC-CHHHHHHHHHHhhC---CCcHHHHhcCCCCHHHHHHH
Confidence 56678899999999998666555444333 245666665322 12344444432221 121111 122222111
Q ss_pred ----cccCCCcEEEE-----CHhhHHHHHhccccccccCcccEEEEecccccCC-----CChhHHHHHHHHHHHhhhccC
Q psy13788 788 ----QAISSASVIVT-----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-----DRGPVLEVIVSRVNFISSYTK 853 (1034)
Q Consensus 788 ----~~~~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-----~~~~~~~~il~rl~~l~~~~~ 853 (1034)
..+.+.++.|. |++.+....++... -..+++||||=.+.+.. .+...+..+...++.++..+
T Consensus 303 ~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~---~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel- 378 (476)
T PRK08760 303 TGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR---EHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKEL- 378 (476)
T ss_pred HHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHh-
Confidence 11223445443 45555444543322 14589999999998842 23345667777887775543
Q ss_pred CCeEEEEEccC
Q psy13788 854 RNVRLVGLSTA 864 (1034)
Q Consensus 854 ~~~~iv~lSAT 864 (1034)
+++++++|-.
T Consensus 379 -~ipVi~lsQL 388 (476)
T PRK08760 379 -NVPVIALSQL 388 (476)
T ss_pred -CCEEEEeecc
Confidence 6778888743
No 413
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=90.00 E-value=2.3 Score=49.36 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADW 764 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~ 764 (1034)
...+++++++|+|||+++.-.+.. +.+ .+.+++++. +.+.-+.++...+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~-L~~-~g~kV~lV~~D~~R~aa~eQL~~l 145 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARY-FKK-KGLKVGLVAADTYRPAAYDQLKQL 145 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HHH-cCCeEEEecCCCCCHHHHHHHHHH
Confidence 346889999999999876554433 333 245665554 3344344434444
No 414
>PHA02542 41 41 helicase; Provisional
Probab=89.94 E-value=1.7 Score=51.09 Aligned_cols=139 Identities=11% Similarity=0.155 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc---CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccc--
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA---PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDI-- 787 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~---Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~-- 787 (1034)
.|.-+++.|++|.|||..++--+..... .+..++|+. |...|+. ++.... .++....+.. ...+.
T Consensus 189 ~G~LiiIaarPgmGKTtfalniA~~~a~--~g~~Vl~fSLEM~~~ql~~----Rl~a~~---~~i~~~~l~~-l~~~~~~ 258 (473)
T PHA02542 189 RKTLNVLLAGVNVGKSLGLCSLAADYLQ--QGYNVLYISMEMAEEVIAK----RIDANL---LDVSLDDIDD-LSKAEYK 258 (473)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHHHHh--cCCcEEEEeccCCHHHHHH----HHHHHH---cCCCHHHHhh-cCHHHHH
Confidence 4556889999999999877666555543 266777765 4433333 332111 1111111110 00000
Q ss_pred ------cccCCCcEEE-------ECHhhHHHHHhccccccccCcccEEEEecccccCC--------CChhHHHHHHHHHH
Q psy13788 788 ------QAISSASVIV-------TTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE--------DRGPVLEVIVSRVN 846 (1034)
Q Consensus 788 ------~~~~~~~IiV-------~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~--------~~~~~~~~il~rl~ 846 (1034)
......++.| .|+..+....++.... .-..+++||||=.+.+.+ .+...+..+...++
T Consensus 259 ~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~-~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK 337 (473)
T PHA02542 259 AKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLK-KNFKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELR 337 (473)
T ss_pred HHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHh-cCCCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHH
Confidence 0011233322 2455666666654322 111378999999999852 23344667777787
Q ss_pred HhhhccCCCeEEEEEccC
Q psy13788 847 FISSYTKRNVRLVGLSTA 864 (1034)
Q Consensus 847 ~l~~~~~~~~~iv~lSAT 864 (1034)
.++..+ +++++++|-.
T Consensus 338 ~lAkel--~vpVi~lsQL 353 (473)
T PHA02542 338 GLAVEH--DVVVWTAAQT 353 (473)
T ss_pred HHHHHh--CCeEEEEEee
Confidence 776544 5778888754
No 415
>PRK06321 replicative DNA helicase; Provisional
Probab=89.94 E-value=2.1 Score=50.40 Aligned_cols=142 Identities=17% Similarity=0.187 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEE-cCCCCccc----
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVEL-TGDVTPDI---- 787 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~---- 787 (1034)
.|.=+++.|.+|+|||..++-.+...... .+..++|.+.- -=..|...++.. ...++....+ .|....+.
T Consensus 225 ~G~LiiiaarPgmGKTafal~ia~~~a~~-~g~~v~~fSLE-Ms~~ql~~Rlla---~~s~v~~~~i~~~~l~~~e~~~~ 299 (472)
T PRK06321 225 PSNLMILAARPAMGKTALALNIAENFCFQ-NRLPVGIFSLE-MTVDQLIHRIIC---SRSEVESKKISVGDLSGRDFQRI 299 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEecc-CCHHHHHHHHHH---hhcCCCHHHhhcCCCCHHHHHHH
Confidence 55668899999999998665533332222 25566666421 112333333322 1122322222 23222111
Q ss_pred ----cccCCCcEEEE-----CHhhHHHHHhccccccccCcccEEEEecccccCC-C-------ChhHHHHHHHHHHHhhh
Q psy13788 788 ----QAISSASVIVT-----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-D-------RGPVLEVIVSRVNFISS 850 (1034)
Q Consensus 788 ----~~~~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~-------~~~~~~~il~rl~~l~~ 850 (1034)
..+.+.++.|- |.+.+....++... -..+++||||=.+.+.. + +...+..+.+.++.++.
T Consensus 300 ~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~---~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAk 376 (472)
T PRK06321 300 VSVVNEMQEHTLLIDDQPGLKITDLRARARRMKE---SYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLKNLAR 376 (472)
T ss_pred HHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHHHHHH
Confidence 11234456554 45555444443222 24588999999999853 1 12345566667776654
Q ss_pred ccCCCeEEEEEccC
Q psy13788 851 YTKRNVRLVGLSTA 864 (1034)
Q Consensus 851 ~~~~~~~iv~lSAT 864 (1034)
. -++.+|++|-.
T Consensus 377 e--l~vpVi~lsQL 388 (472)
T PRK06321 377 E--LNIPILCLSQL 388 (472)
T ss_pred H--hCCcEEEEeec
Confidence 3 36778888764
No 416
>KOG1133|consensus
Probab=89.93 E-value=0.43 Score=56.21 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=35.3
Q ss_pred cccCCCChhHHHHHHHHh---cCCCcEEEEcCCCChhhHHHHHHHHHHHH
Q psy13788 694 YKFSHFNPIQTQIFHCLY---HTDNNVLLGAPTGSGKTIAAEITCFRVFK 740 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~---~~~~~vll~apTGsGKT~~~~l~il~~l~ 740 (1034)
|+|+ |..+|.+....++ ..|+-.|..+|||+|||+.-+=+.+..+.
T Consensus 12 fPy~-PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 12 FPYT-PYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CCCC-chhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 3444 8999999877654 47888999999999999876666655553
No 417
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.93 E-value=8.3 Score=44.27 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=30.6
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWK 765 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~ 765 (1034)
+.-+++++|||+|||+.+.--+...... .+.++.++. +.|..+.++...+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~eQLk~yA 275 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAIEQLKRYA 275 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccchhhhHHHHHHHHH
Confidence 3458899999999998766555433222 244555444 55565555444443
No 418
>PRK04195 replication factor C large subunit; Provisional
Probab=89.62 E-value=2.4 Score=50.47 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
.+.+++.+|+|+|||..+..
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45799999999999986543
No 419
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=89.50 E-value=0.54 Score=52.65 Aligned_cols=55 Identities=27% Similarity=0.374 Sum_probs=48.7
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhc
Q psy13788 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWE 550 (1034)
Q Consensus 486 ~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~ 550 (1034)
..||..+ |+|++.++.+|.+.|+ |++|++++++++|.++.. +++.+..+++.++.
T Consensus 5 ~~~l~~l----------~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~g~~~~~a~~l~~~a~~ 61 (317)
T PRK04301 5 EKDLEDL----------PGVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAARE 61 (317)
T ss_pred cccHhhc----------CCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4578888 9999999999999999 999999999999999886 67788888888753
No 420
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=89.50 E-value=1.7 Score=53.96 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=16.5
Q ss_pred CcEEEEcCCCChhhHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~ 734 (1034)
.++++.+|+|+|||..+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARII 72 (725)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47999999999999866543
No 421
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=89.37 E-value=0.68 Score=51.32 Aligned_cols=43 Identities=26% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~ 758 (1034)
|+-+.+.+|+|+|||..++-.+...... +.+++|+.+-.++-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHH
Confidence 4568899999999998777666655443 788999987666544
No 422
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=89.20 E-value=1.4 Score=50.46 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=34.1
Q ss_pred Ccccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcc--cHHHHHH
Q psy13788 145 DIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE--KLNHYLS 207 (1034)
Q Consensus 145 gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~--~~~~y~~ 207 (1034)
|++.|. ..|| +|+|-. |...+.|+.||.||- ..|.++++...+ +..+|.+
T Consensus 438 GLDIp~vDlVi----fYEpvp------SeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~ 490 (542)
T COG1111 438 GLDIPEVDLVI----FYEPVP------SEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYS 490 (542)
T ss_pred cCCCCcccEEE----EecCCc------HHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHH
Confidence 788886 3343 376432 246789999999995 689888777664 5555555
No 423
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.19 E-value=0.46 Score=53.23 Aligned_cols=51 Identities=14% Similarity=0.298 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHH
Q psy13788 704 TQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALV 757 (1034)
Q Consensus 704 ~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~ 757 (1034)
.+.+..+...+.++++++|||||||+.. -+++..+. +..+++.+--+.||.
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll-~aL~~~ip--~~~ri~tiEd~~El~ 200 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFT-NAALREIP--AIERLITVEDAREIV 200 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHH-HHHHhhCC--CCCeEEEecCCCccc
Confidence 3445555557889999999999999843 33444443 246777776666653
No 424
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.16 E-value=2.6 Score=47.15 Aligned_cols=29 Identities=31% Similarity=0.563 Sum_probs=17.7
Q ss_pred HHHHHHhcCCC--cEEE-EcCCCChhhHHHHH
Q psy13788 705 QIFHCLYHTDN--NVLL-GAPTGSGKTIAAEI 733 (1034)
Q Consensus 705 ~ai~~l~~~~~--~vll-~apTGsGKT~~~~l 733 (1034)
+.+..+...++ ++++ .+|+|+|||..+..
T Consensus 31 ~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 31 ETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred HHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHH
Confidence 33444433442 4554 89999999986443
No 425
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.06 E-value=2.7 Score=49.54 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=16.4
Q ss_pred EEEEcCCCChhhHHHHHHHH
Q psy13788 717 VLLGAPTGSGKTIAAEITCF 736 (1034)
Q Consensus 717 vll~apTGsGKT~~~~l~il 736 (1034)
+++.+|+|+|||..+.+.+-
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999997765443
No 426
>PRK09354 recA recombinase A; Provisional
Probab=88.95 E-value=0.95 Score=50.63 Aligned_cols=43 Identities=26% Similarity=0.183 Sum_probs=33.2
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~ 758 (1034)
|+-+.+.+|+|||||..++-.+...... +.+++|+-.-.++-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH
Confidence 4568899999999999887776665543 788999987766554
No 427
>KOG0926|consensus
Probab=88.89 E-value=0.34 Score=57.71 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhc
Q psy13788 314 TLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHM 364 (1034)
Q Consensus 314 ~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l 364 (1034)
..++.|.+.|...|-+..+ | .+|++|+.+|.|-++|.-.+.+.-.-
T Consensus 750 ~~L~~Aer~L~~LgALd~~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~ 795 (1172)
T KOG0926|consen 750 SALEKAERRLKALGALDSN---G--GLTKLGKAMSLFPLSPRFSKMLATSD 795 (1172)
T ss_pred HHHHHHHHHHHHhcccccc---C--CcccccchhcccccChhHHHHHHHHH
Confidence 4567888889988988653 2 89999999999999999888776543
No 428
>PF05729 NACHT: NACHT domain
Probab=88.86 E-value=3.1 Score=41.12 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=26.7
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCC---eEEEEcCcHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEA---KVVYIAPLKALVKE 759 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~---~~lvi~Pt~~L~~q 759 (1034)
-++|.++.|+|||....-.+.......... .+++..+.++...+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 478999999999986654444433332222 35555565555543
No 429
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.79 E-value=2.2 Score=51.49 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=26.3
Q ss_pred ccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 815 YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 815 ~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
.....+++||||+|.|.. .....++..+ ...+..+.+|+.+
T Consensus 115 ~~~~~KVvIIDEah~Lt~---~A~NALLK~L----EEpp~~~~fIL~t 155 (584)
T PRK14952 115 AQSRYRIFIVDEAHMVTT---AGFNALLKIV----EEPPEHLIFIFAT 155 (584)
T ss_pred hcCCceEEEEECCCcCCH---HHHHHHHHHH----hcCCCCeEEEEEe
Confidence 346778999999999974 3344444333 3345566666665
No 430
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.73 E-value=3.3 Score=50.27 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.4
Q ss_pred EEEEcCCCChhhHHHHHHHHHH
Q psy13788 717 VLLGAPTGSGKTIAAEITCFRV 738 (1034)
Q Consensus 717 vll~apTGsGKT~~~~l~il~~ 738 (1034)
+++++|.|+|||.++.+.+-..
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999876654433
No 431
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.72 E-value=2.1 Score=43.84 Aligned_cols=55 Identities=7% Similarity=0.146 Sum_probs=30.9
Q ss_pred hhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 801 EKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 801 e~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
+.+..+.............+++|+||+|.+.. .....++..+ ...+....+|+.+
T Consensus 79 ~~i~~i~~~~~~~~~~~~~kviiide~~~l~~---~~~~~Ll~~l----e~~~~~~~~il~~ 133 (188)
T TIGR00678 79 DQVRELVEFLSRTPQESGRRVVIIEDAERMNE---AAANALLKTL----EEPPPNTLFILIT 133 (188)
T ss_pred HHHHHHHHHHccCcccCCeEEEEEechhhhCH---HHHHHHHHHh----cCCCCCeEEEEEE
Confidence 45544444333444456778999999999874 2333444333 2334455555553
No 432
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=88.67 E-value=6.6 Score=44.77 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=47.6
Q ss_pred EEEcCCCChhhHHHHHHHHHHHHhCCC-CeEEEEcCcHHHHHHH-HH---HHHHHhhhhcCCeEEEEcCCCCccccccCC
Q psy13788 718 LLGAPTGSGKTIAAEITCFRVFKQCPE-AKVVYIAPLKALVKER-VA---DWKVKFEARLKKKVVELTGDVTPDIQAISS 792 (1034)
Q Consensus 718 ll~apTGsGKT~~~~l~il~~l~~~~~-~~~lvi~Pt~~L~~q~-~~---~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 792 (1034)
++.++.|+|||.+....++......++ ..++++ |+..-+.+. .. .......+............ ......+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nG 76 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR---KIILPNG 76 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS---EEEETTS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC---cEEecCc
Confidence 467899999999988877777666655 555555 555444442 22 22221111111111111110 0011245
Q ss_pred CcEEEECHhh---HHHHHhccccccccCcccEEEEecccccCC
Q psy13788 793 ASVIVTTPEK---WDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832 (1034)
Q Consensus 793 ~~IiV~Tpe~---l~~l~~~~~~~~~l~~l~~lViDEaH~l~~ 832 (1034)
..|.+.+-+. ...+. + ...+++++||+-.+.+
T Consensus 77 ~~i~~~~~~~~~~~~~~~----G----~~~~~i~iDE~~~~~~ 111 (384)
T PF03237_consen 77 SRIQFRGADSPDSGDNIR----G----FEYDLIIIDEAAKVPD 111 (384)
T ss_dssp -EEEEES-----SHHHHH----T----S--SEEEEESGGGSTT
T ss_pred eEEEEecccccccccccc----c----cccceeeeeecccCch
Confidence 5566665332 11111 1 4578999999988865
No 433
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=88.65 E-value=6.4 Score=43.89 Aligned_cols=128 Identities=18% Similarity=0.233 Sum_probs=62.9
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccccc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAI 790 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 790 (1034)
.+.-+.+.+|+|+|||+...--+... .. .+.+++++. +.+.-+.++...|... .++.+.... ...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l-~~-~g~~V~Li~~D~~r~~a~eql~~~a~~----~~i~~~~~~--~~~----- 179 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY-KA-QGKKVLLAAGDTFRAAAIEQLQVWGER----VGVPVIAQK--EGA----- 179 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-Hh-cCCeEEEEecCccchhhHHHHHHHHHH----cCceEEEeC--CCC-----
Confidence 34567889999999997654433322 22 255666654 3455555555555432 233332211 100
Q ss_pred CCCcEEEECHhh--HHHHHhccccccccCcccEEEEecccccCCCCh--hHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 791 SSASVIVTTPEK--WDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRG--PVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 791 ~~~~IiV~Tpe~--l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~--~~~~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
.|.. +..+.. ....+.++||+|=+-.+..... ..+..+..-+... ....+.-.++.++||..
T Consensus 180 --------dpa~~v~~~l~~-----~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~-~~~~p~~~~LVl~a~~g 245 (318)
T PRK10416 180 --------DPASVAFDAIQA-----AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKA-DPDAPHEVLLVLDATTG 245 (318)
T ss_pred --------CHHHHHHHHHHH-----HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhh-cCCCCceEEEEEECCCC
Confidence 1211 111111 1135679999999988753211 2222222211111 11234456788899964
Q ss_pred C
Q psy13788 867 N 867 (1034)
Q Consensus 867 ~ 867 (1034)
.
T Consensus 246 ~ 246 (318)
T PRK10416 246 Q 246 (318)
T ss_pred h
Confidence 4
No 434
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=88.48 E-value=1.6 Score=50.27 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=32.6
Q ss_pred Ccccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCc
Q psy13788 145 DIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 145 gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~ 199 (1034)
|+++|- -|-| .|++.-|+ .=|-....|-+|||-|. -.|++|+.++.
T Consensus 509 GLDiPEVsLVAI-----lDADKeGF-LRse~SLIQtIGRAARN---~~GkvIlYAD~ 556 (663)
T COG0556 509 GLDLPEVSLVAI-----LDADKEGF-LRSERSLIQTIGRAARN---VNGKVILYADK 556 (663)
T ss_pred cCCCcceeEEEE-----eecCcccc-ccccchHHHHHHHHhhc---cCCeEEEEchh
Confidence 566773 5666 46555443 22346789999999995 57999999876
No 435
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.47 E-value=2.8 Score=50.24 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=26.1
Q ss_pred ccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 815 YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 815 ~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
...+.+++||||+|.+.. .....+++.+ ...+..+.+|+.|
T Consensus 116 ~~~~~kVvIIDEad~ls~---~a~naLLK~L----Eepp~~~~fIL~t 156 (527)
T PRK14969 116 TRGRFKVYIIDEVHMLSK---SAFNAMLKTL----EEPPEHVKFILAT 156 (527)
T ss_pred ccCCceEEEEcCcccCCH---HHHHHHHHHH----hCCCCCEEEEEEe
Confidence 345678999999999874 2334444333 3345567777765
No 436
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=88.46 E-value=2.6 Score=53.06 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=25.7
Q ss_pred cCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 816 VQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 816 l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
..+.+++||||+|.|.. .....+++.| ...+..+.+|+.+
T Consensus 118 ~~~~KV~IIDEad~lt~---~a~NaLLK~L----EEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTP---QGFNALLKIV----EEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCH---HHHHHHHHHH----hCCCCCeEEEEEe
Confidence 35678999999999974 3334444333 3345566677665
No 437
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=88.45 E-value=1.6 Score=54.57 Aligned_cols=127 Identities=16% Similarity=0.204 Sum_probs=71.7
Q ss_pred EEEEEccCCCC-HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEec
Q psy13788 857 RLVGLSTALAN-AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVS 935 (1034)
Q Consensus 857 ~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~ 935 (1034)
++-|||+|... ..+|.+-.+++ +.. -|..+|+. ....+..-|..........+.+....+..+.|+||-+.
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~---Vv~-IPTnrP~~----R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~ 636 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLD---VVV-IPTNRPIA----RKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTT 636 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC---EEE-CCCCCCcc----eecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 46799999754 34455444433 222 23333321 11122222333333333233334445578899999999
Q ss_pred ChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCC
Q psy13788 936 SRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKE 1015 (1034)
Q Consensus 936 s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~ 1015 (1034)
|++..+.+++.|..... + -.++++.....+-+.|.+ .|.
T Consensus 637 SVe~SE~lS~~L~~~gI----~------------------------------H~VLNAK~h~~EAeIVA~-------AG~ 675 (1112)
T PRK12901 637 SVEISELLSRMLKMRKI----P------------------------------HNVLNAKLHQKEAEIVAE-------AGQ 675 (1112)
T ss_pred cHHHHHHHHHHHHHcCC----c------------------------------HHHhhccchhhHHHHHHh-------cCC
Confidence 99999888877654311 1 234555544455555533 343
Q ss_pred -ceEEEechhhhhccCCCC
Q psy13788 1016 -NQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1016 -i~VLVaT~~l~~Gv~Dfs 1033 (1034)
-.|-|||+.++||- |+.
T Consensus 676 ~GaVTIATNMAGRGT-DIk 693 (1112)
T PRK12901 676 PGTVTIATNMAGRGT-DIK 693 (1112)
T ss_pred CCcEEEeccCcCCCc-Ccc
Confidence 35889999999999 974
No 438
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.43 E-value=4.7 Score=42.62 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=28.1
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P 752 (1034)
.|..+++.+|+|+|||..+...+.+.+.+ +..++|+.-
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEc
Confidence 56789999999999998766555555443 667777773
No 439
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.36 E-value=2 Score=51.46 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=17.9
Q ss_pred cEEEEcCCCChhhHHHHHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRV 738 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~ 738 (1034)
.+++.+|.|+|||..+...+-..
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999776655433
No 440
>PRK08006 replicative DNA helicase; Provisional
Probab=88.23 E-value=3.1 Score=49.02 Aligned_cols=142 Identities=16% Similarity=0.194 Sum_probs=78.6
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEE-cCCCCcccc---
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVEL-TGDVTPDIQ--- 788 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~--- 788 (1034)
.|.-+++.|.+|.|||..++--+.....+ .+..++|...-- =..|...++.... .++....+ .|..+.+..
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM-~~~ql~~Rlla~~---~~v~~~~i~~~~l~~~e~~~~ 297 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEM-PGEQIMMRMLASL---SRVDQTRIRTGQLDDEDWARI 297 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccC-CHHHHHHHHHHHh---cCCCHHHhhcCCCCHHHHHHH
Confidence 56678899999999998666555444333 256677665321 1234444443222 22222212 232222111
Q ss_pred -----cc-CCCcEEEE-----CHhhHHHHHhccccccccCcccEEEEecccccCC-----CChhHHHHHHHHHHHhhhcc
Q psy13788 789 -----AI-SSASVIVT-----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-----DRGPVLEVIVSRVNFISSYT 852 (1034)
Q Consensus 789 -----~~-~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-----~~~~~~~~il~rl~~l~~~~ 852 (1034)
.. ...++.|- |+..+....++.... ...+++||||=.|++.. .+...+..+...++.++..+
T Consensus 298 ~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel 375 (471)
T PRK08006 298 SGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFRE--HGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKEL 375 (471)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 11 34455553 455554444432221 13589999999999852 23445777888888776543
Q ss_pred CCCeEEEEEcc
Q psy13788 853 KRNVRLVGLST 863 (1034)
Q Consensus 853 ~~~~~iv~lSA 863 (1034)
++.+|++|-
T Consensus 376 --~ipVi~LsQ 384 (471)
T PRK08006 376 --QVPVVALSQ 384 (471)
T ss_pred --CCeEEEEEe
Confidence 677888884
No 441
>PRK05595 replicative DNA helicase; Provisional
Probab=88.16 E-value=1.8 Score=50.95 Aligned_cols=142 Identities=14% Similarity=0.165 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEE-cCCCCcccc---
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVEL-TGDVTPDIQ--- 788 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~--- 788 (1034)
.|.-+++.|.||+|||..++--+.....+ .+.+++|+..-- =..|...++... ..++....+ .|.......
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~-~g~~vl~fSlEm-s~~~l~~R~~a~---~~~v~~~~~~~~~l~~~e~~~~ 274 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALR-EGKSVAIFSLEM-SKEQLAYKLLCS---EANVDMLRLRTGNLEDKDWENI 274 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHH-cCCcEEEEecCC-CHHHHHHHHHHH---hcCCCHHHHhcCCCCHHHHHHH
Confidence 56668899999999998665554433222 256777776431 123333333221 122322222 122211110
Q ss_pred -----ccCCCcEEEE-----CHhhHHHHHhccccccccCcccEEEEecccccCCC-----ChhHHHHHHHHHHHhhhccC
Q psy13788 789 -----AISSASVIVT-----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED-----RGPVLEVIVSRVNFISSYTK 853 (1034)
Q Consensus 789 -----~~~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~-----~~~~~~~il~rl~~l~~~~~ 853 (1034)
.+...++.|- |++.+....+++.. -..+++||||=.|.+... +...+..+...++.++..
T Consensus 275 ~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~---~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke-- 349 (444)
T PRK05595 275 ARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI---EHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKE-- 349 (444)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH---hcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHH--
Confidence 1122334432 44445444443322 135899999999998631 223566777777776544
Q ss_pred CCeEEEEEccC
Q psy13788 854 RNVRLVGLSTA 864 (1034)
Q Consensus 854 ~~~~iv~lSAT 864 (1034)
-++.++++|-.
T Consensus 350 ~~i~vi~lsQL 360 (444)
T PRK05595 350 MECPVIALSQL 360 (444)
T ss_pred hCCeEEEeecc
Confidence 36778888754
No 442
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.96 E-value=0.32 Score=52.15 Aligned_cols=21 Identities=52% Similarity=0.795 Sum_probs=17.6
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
+..|+++.+|||||||+.+.-
T Consensus 96 ~KSNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred eeccEEEECCCCCcHHHHHHH
Confidence 457899999999999996543
No 443
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.96 E-value=0.55 Score=51.27 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHH
Q psy13788 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756 (1034)
Q Consensus 701 ~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L 756 (1034)
+...+.+......+.++++++|||||||+.. -.++..+... ..+++++-...|+
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~~-~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPPE-DERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT-TSEEEEEESSS-S
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHH-HHHhhhcccc-ccceEEeccccce
Confidence 3444455544446789999999999999854 3344444432 4677777776664
No 444
>PRK13766 Hef nuclease; Provisional
Probab=87.89 E-value=1.5 Score=55.65 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhh
Q psy13788 503 PILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAW 549 (1034)
Q Consensus 503 p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~ 549 (1034)
|++++..+++|.++ + +++++.+++.+++..+-. .++.++.+.++++
T Consensus 721 pgig~~~a~~Ll~~-fgs~~~i~~as~~~L~~i~Gig~~~a~~i~~~~~ 768 (773)
T PRK13766 721 PDVGPVLARNLLEH-FGSVEAVMTASEEELMEVEGIGEKTAKRIREVVT 768 (773)
T ss_pred CCCCHHHHHHHHHH-cCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHh
Confidence 99999999999874 5 999999999999987611 3455555655543
No 445
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.88 E-value=4 Score=48.87 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=25.6
Q ss_pred ccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 815 YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 815 ~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
...+.+++||||+|.+.. .....++..+ ...+..+.+|+.+
T Consensus 116 ~~g~~kViIIDEa~~ls~---~a~naLLK~L----Eepp~~v~fIL~T 156 (546)
T PRK14957 116 SQGRYKVYLIDEVHMLSK---QSFNALLKTL----EEPPEYVKFILAT 156 (546)
T ss_pred hcCCcEEEEEechhhccH---HHHHHHHHHH----hcCCCCceEEEEE
Confidence 345678999999999874 2334444333 2344566666655
No 446
>KOG2228|consensus
Probab=87.81 E-value=10 Score=41.60 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=29.5
Q ss_pred cEEEEecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHh
Q psy13788 820 ALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLAT 873 (1034)
Q Consensus 820 ~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~ 873 (1034)
-.+|+||+|.... .+...+-.++ -+......++-++|+|..+.-.+.+.+
T Consensus 139 ViFIldEfDlf~~h~rQtllYnlf----Disqs~r~Piciig~Ttrld~lE~LEK 189 (408)
T KOG2228|consen 139 VIFILDEFDLFAPHSRQTLLYNLF----DISQSARAPICIIGVTTRLDILELLEK 189 (408)
T ss_pred EEEEeehhhccccchhhHHHHHHH----HHHhhcCCCeEEEEeeccccHHHHHHH
Confidence 4689999998765 3332222222 233445667889999887743333333
No 447
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=87.77 E-value=2.1 Score=44.67 Aligned_cols=39 Identities=33% Similarity=0.372 Sum_probs=29.2
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt 753 (1034)
.|.-+.+.+|+|+|||..++..+...... +.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence 35568899999999999876665555443 6788888764
No 448
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.65 E-value=8.1 Score=42.48 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=75.7
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCC
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSA 793 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 793 (1034)
-+++++-.|+|||++..--+.... ..+.++++.+ -.||=|.+|.+.|.++ .|..+..-. ...
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~--~~g~~VllaA~DTFRAaAiEQL~~w~er----~gv~vI~~~--~G~-------- 204 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLK--QQGKSVLLAAGDTFRAAAIEQLEVWGER----LGVPVISGK--EGA-------- 204 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHH--HCCCeEEEEecchHHHHHHHHHHHHHHH----hCCeEEccC--CCC--------
Confidence 477899999999986443333322 3477777776 6788888889998875 344544321 111
Q ss_pred cEEEECHhhH-HHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhc-c--CCCeEEEEEccCCCC--
Q psy13788 794 SVIVTTPEKW-DGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSY-T--KRNVRLVGLSTALAN-- 867 (1034)
Q Consensus 794 ~IiV~Tpe~l-~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~-~--~~~~~iv~lSATl~~-- 867 (1034)
.|..+ ...+. ...-+++++|++|=|-+|.+.. .+..=+.++...... . .+.--++.+-||..+
T Consensus 205 -----DpAaVafDAi~----~Akar~~DvvliDTAGRLhnk~--nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna 273 (340)
T COG0552 205 -----DPAAVAFDAIQ----AAKARGIDVVLIDTAGRLHNKK--NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA 273 (340)
T ss_pred -----CcHHHHHHHHH----HHHHcCCCEEEEeCcccccCch--hHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH
Confidence 12211 11222 2224678999999999987631 222222233222111 1 112245556888776
Q ss_pred ---HHHHHhHhccc
Q psy13788 868 ---AKDLATWLNIT 878 (1034)
Q Consensus 868 ---~~~l~~~l~~~ 878 (1034)
++.|.+..+++
T Consensus 274 l~QAk~F~eav~l~ 287 (340)
T COG0552 274 LSQAKIFNEAVGLD 287 (340)
T ss_pred HHHHHHHHHhcCCc
Confidence 45566655544
No 449
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=87.61 E-value=0.26 Score=51.14 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=36.0
Q ss_pred ccccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh
Q psy13788 4 LTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR 51 (1034)
Q Consensus 4 ~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~ 51 (1034)
.+++++++|+||+|.+.+ +.|..++.++.++. ...+++++|++.+
T Consensus 140 ~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~---~~~~~~~~SAT~~ 185 (203)
T cd00268 140 DLSKVKYLVLDEADRMLDMGFEDQIREILKLLP---KDRQTLLFSATMP 185 (203)
T ss_pred ChhhCCEEEEeChHHhhccChHHHHHHHHHhCC---cccEEEEEeccCC
Confidence 357899999999999988 88999999888742 3567888887544
No 450
>PRK08840 replicative DNA helicase; Provisional
Probab=87.50 E-value=3.4 Score=48.65 Aligned_cols=142 Identities=15% Similarity=0.222 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEE-cCCCCcccc---
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVEL-TGDVTPDIQ--- 788 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~--- 788 (1034)
.|.-+++.|.||.|||..++-.+.....+ .+..++|...--. ..|...++.... .++....+ .|....+..
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~-~~~~v~~fSlEMs-~~ql~~Rlla~~---s~v~~~~i~~~~l~~~e~~~~ 290 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMD-QDKPVLIFSLEMP-AEQLMMRMLASL---SRVDQTKIRTGQLDDEDWARI 290 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHh-CCCeEEEEeccCC-HHHHHHHHHHhh---CCCCHHHHhcCCCCHHHHHHH
Confidence 56678899999999998765444443322 2566777653211 234444443222 22222111 222221110
Q ss_pred -----cc-CCCcEEEE-----CHhhHHHHHhccccccccCcccEEEEecccccCC-----CChhHHHHHHHHHHHhhhcc
Q psy13788 789 -----AI-SSASVIVT-----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-----DRGPVLEVIVSRVNFISSYT 852 (1034)
Q Consensus 789 -----~~-~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-----~~~~~~~~il~rl~~l~~~~ 852 (1034)
.+ ...++.|- |+..+....++.... ...+++||||=.|++.. .+...+..+...++.++..+
T Consensus 291 ~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~--~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel 368 (464)
T PRK08840 291 SSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIARE--HGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKEL 368 (464)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 11 23345443 344554444432211 13589999999999852 22345677777887776544
Q ss_pred CCCeEEEEEcc
Q psy13788 853 KRNVRLVGLST 863 (1034)
Q Consensus 853 ~~~~~iv~lSA 863 (1034)
++++|++|-
T Consensus 369 --~ipVi~LsQ 377 (464)
T PRK08840 369 --NVPVVALSQ 377 (464)
T ss_pred --CCeEEEEEe
Confidence 677888874
No 451
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=87.49 E-value=3.9 Score=45.96 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=27.9
Q ss_pred CChhHHHHHHHHhc-CC---CcEEEEcCCCChhhHHHHHHHHHHH
Q psy13788 699 FNPIQTQIFHCLYH-TD---NNVLLGAPTGSGKTIAAEITCFRVF 739 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~-~~---~~vll~apTGsGKT~~~~l~il~~l 739 (1034)
+.|+|......+.. .+ .-+++.+|.|.||+..+...+-..+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 35788887776653 12 2488999999999987755443333
No 452
>KOG0739|consensus
Probab=87.42 E-value=3.9 Score=43.70 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=27.2
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERV 761 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~ 761 (1034)
-+++-+|+|+||+..+-..+-. ...+.+-+.+-.|+..|.
T Consensus 168 giLLyGPPGTGKSYLAKAVATE------AnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATE------ANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhh------cCCceEEeehHHHHHHHh
Confidence 4899999999999854332222 236777777777776543
No 453
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=87.40 E-value=5.5 Score=45.06 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=25.5
Q ss_pred ccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEcc
Q psy13788 815 YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLST 863 (1034)
Q Consensus 815 ~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSA 863 (1034)
.....+++||||||.|.. ...+.++..+ ...+.+..++++|.
T Consensus 138 ~~g~~rVviIDeAd~l~~---~aanaLLk~L----EEpp~~~~fiLit~ 179 (351)
T PRK09112 138 GDGNWRIVIIDPADDMNR---NAANAILKTL----EEPPARALFILISH 179 (351)
T ss_pred ccCCceEEEEEchhhcCH---HHHHHHHHHH----hcCCCCceEEEEEC
Confidence 345678999999999974 3334444433 23344556666653
No 454
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=87.29 E-value=7.8 Score=45.97 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHh-CCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCe-EEEEcCCCCccccccC
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQ-CPEAKVVYIAPLKALVKERVADWKVKFEARLKKK-VVELTGDVTPDIQAIS 791 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~-~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~-v~~~~g~~~~~~~~~~ 791 (1034)
.+-.+.--|=-.|||. ++.|++..+.. -.+-++.|+++-|..++-.++++..++.+..+-+ +....+
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~---------- 270 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD---------- 270 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC----------
Confidence 4455666799999997 45555555443 5689999999999887777777665555543322 211111
Q ss_pred CCcEEEECHhhH---HHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q psy13788 792 SASVIVTTPEKW---DGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTAL 865 (1034)
Q Consensus 792 ~~~IiV~Tpe~l---~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl 865 (1034)
..|.+.-|+.= .-..-...+...=++.+++++||||.+.. ..+..++..| ..++.++|..|.|-
T Consensus 271 -~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~---~a~~tilgfm------~q~~~KiIfISS~N 337 (668)
T PHA03372 271 -NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK---DAFNTILGFL------AQNTTKIIFISSTN 337 (668)
T ss_pred -cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH---HHHHHhhhhh------cccCceEEEEeCCC
Confidence 12333322211 00000001222236789999999999874 4555565544 34678899998874
No 455
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.22 E-value=9.6 Score=41.31 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcH-HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLK-ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA 789 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~-~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 789 (1034)
.+..+.+.+|+|+|||..+...+..... .+.++.++. +.+ +.+.| |+... ...++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~--~~~~v~~i~~D~~ri~~~~q----l~~~~-~~~~~~~~------------ 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHSRIGTVQQ----LQDYV-KTIGFEVI------------ 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHH----HHHHh-hhcCceEE------------
Confidence 4568999999999999977655444322 244554444 232 34443 33211 11222221
Q ss_pred cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 790 ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 790 ~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
...+|+.+...+.... ...+.+++|+|-+=....+ ...++.+...+ ....+...++.+|||..
T Consensus 135 ------~~~~~~~l~~~l~~l~---~~~~~D~ViIDt~Gr~~~~-~~~l~el~~~~----~~~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 135 ------AVRDEAAMTRALTYFK---EEARVDYILIDTAGKNYRA-SETVEEMIETM----GQVEPDYICLTLSASMK 197 (270)
T ss_pred ------ecCCHHHHHHHHHHHH---hcCCCCEEEEECCCCCcCC-HHHHHHHHHHH----hhhCCCeEEEEEcCccC
Confidence 1135555544443211 1245799999999776421 23344333322 23334445778999864
No 456
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=87.22 E-value=4.8 Score=40.71 Aligned_cols=93 Identities=20% Similarity=0.172 Sum_probs=50.4
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCC
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSA 793 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 793 (1034)
+.-.++.+|-.||||..-+.-+.+.-. .+.++++..|-.. . +++. -.+..-.|.. ..
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~--~g~~v~vfkp~iD---~-------R~~~---~~V~Sr~G~~--------~~ 60 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE--AGMKVLVFKPAID---T-------RYGV---GKVSSRIGLS--------SE 60 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH--cCCeEEEEecccc---c-------cccc---ceeeeccCCc--------cc
Confidence 334688999999999954333333322 3778888877532 1 2221 1222222221 12
Q ss_pred cEEEECHhhHHHHHhccccccccCcccEEEEecccccCC
Q psy13788 794 SVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832 (1034)
Q Consensus 794 ~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~ 832 (1034)
-++|-.+..+...+.. ......++.|.+|||+.+..
T Consensus 61 A~~i~~~~~i~~~i~~---~~~~~~~~~v~IDEaQF~~~ 96 (201)
T COG1435 61 AVVIPSDTDIFDEIAA---LHEKPPVDCVLIDEAQFFDE 96 (201)
T ss_pred ceecCChHHHHHHHHh---cccCCCcCEEEEehhHhCCH
Confidence 2444455444444432 11122388999999999874
No 457
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.21 E-value=3.6 Score=49.68 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=22.3
Q ss_pred HHHHHhcCC---CcEEEEcCCCChhhHHHHHHHHHH
Q psy13788 706 IFHCLYHTD---NNVLLGAPTGSGKTIAAEITCFRV 738 (1034)
Q Consensus 706 ai~~l~~~~---~~vll~apTGsGKT~~~~l~il~~ 738 (1034)
.+...+.++ ..+++.+|.|+|||.++.+.+-..
T Consensus 27 ~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 27 ILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 344444344 347889999999999887655443
No 458
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.19 E-value=1.7 Score=46.65 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
..=++|.+|||||||+. +.+++..+.++....+|-|-
T Consensus 125 ~GLILVTGpTGSGKSTT-lAamId~iN~~~~~HIlTIE 161 (353)
T COG2805 125 RGLILVTGPTGSGKSTT-LAAMIDYINKHKAKHILTIE 161 (353)
T ss_pred CceEEEeCCCCCcHHHH-HHHHHHHHhccCCcceEEec
Confidence 34588999999999874 34567777766555555444
No 459
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=87.00 E-value=1.2 Score=47.01 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=53.6
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhC----CCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQC----PEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQ 788 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~----~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 788 (1034)
.|.-+.+.+|+|+|||..+...+....... .+.+++|+..-...-.+...++.+.+. ... . .
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~----~~~---------~-~ 83 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFG----LDP---------E-E 83 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhc----cch---------h-h
Confidence 356688999999999987766555443321 127888887643322222222221111 110 0 0
Q ss_pred ccCCCcEEE---ECHhhHHHHHhccccccccCcccEEEEeccccc
Q psy13788 789 AISSASVIV---TTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 789 ~~~~~~IiV---~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l 830 (1034)
.. .++.+ .+++.+...++.......-..+++||+|-+-.+
T Consensus 84 ~~--~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 84 VL--DNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred hh--ccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence 00 12332 345555444443222122357889999998765
No 460
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.96 E-value=0.64 Score=53.64 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=25.2
Q ss_pred CChhHHHHHHHHhcCCC-cEEEEcCCCChhhHH
Q psy13788 699 FNPIQTQIFHCLYHTDN-NVLLGAPTGSGKTIA 730 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~-~vll~apTGsGKT~~ 730 (1034)
+.+.|.+.+..+++... =+++.+|||||||+.
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 56788888887774443 478899999999985
No 461
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=86.83 E-value=6.8 Score=48.62 Aligned_cols=32 Identities=6% Similarity=0.020 Sum_probs=25.6
Q ss_pred hcccHHHHHHHHHHHHHHHhccCCCCCccccc
Q psy13788 461 HRNNAIMAARFLKFALMFETKQWPHETPLRQI 492 (1034)
Q Consensus 461 ~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~ql 492 (1034)
-..|......+..|...|.-+......||...
T Consensus 733 D~~W~eHL~~md~LRegI~LR~ygQkDPl~EY 764 (796)
T PRK12906 733 DSHWTDHIDAMDQLRQSIGLRGYGQLNPLVEY 764 (796)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCHHHHH
Confidence 35788888888888888888888777888766
No 462
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.82 E-value=4.8 Score=49.19 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=18.4
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRV 738 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~ 738 (1034)
..+++.+|.|+|||.++...+-..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh
Confidence 357999999999999776654443
No 463
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=86.78 E-value=2 Score=45.70 Aligned_cols=18 Identities=50% Similarity=0.660 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChhhHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~ 732 (1034)
+++++.+|+|-|||+.+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 579999999999998543
No 464
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.72 E-value=1.4 Score=47.87 Aligned_cols=55 Identities=25% Similarity=0.454 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHhc-CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHH
Q psy13788 699 FNPIQTQIFHCLYH-TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKA 755 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~-~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~ 755 (1034)
+.+.|.+.+..++. .+..+++++|||||||+..- .++..+.. +..+++.+--..|
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~-all~~i~~-~~~~iitiEdp~E 119 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLY-SALSELNT-PEKNIITVEDPVE 119 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHH-HHHhhhCC-CCCeEEEECCCce
Confidence 55678888866653 44578999999999998542 23333332 3456666654444
No 465
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.56 E-value=6.1 Score=48.02 Aligned_cols=42 Identities=17% Similarity=0.335 Sum_probs=26.0
Q ss_pred cccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 814 NYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 814 ~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
....+.+++||||+|.|.. .....++..+ ...+..+.+|+.+
T Consensus 115 p~~~~~KVvIIdev~~Lt~---~a~naLLk~L----Eepp~~~~fIl~t 156 (576)
T PRK14965 115 PSRSRYKIFIIDEVHMLST---NAFNALLKTL----EEPPPHVKFIFAT 156 (576)
T ss_pred cccCCceEEEEEChhhCCH---HHHHHHHHHH----HcCCCCeEEEEEe
Confidence 3446778999999999874 2334444333 2334566666655
No 466
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=86.39 E-value=1 Score=46.39 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=25.3
Q ss_pred cccEEEEecccccCCCChh---HHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 818 SVALIIIDEIHLLGEDRGP---VLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 818 ~l~~lViDEaH~l~~~~~~---~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
.-.++|+||||........ .....+ ..+.........++++|-.+..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~---~~l~~hRh~g~diiliTQ~~~~ 128 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEII---EFLAQHRHYGWDIILITQSPSQ 128 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHH---HGGGGCCCTT-EEEEEES-GGG
T ss_pred CCcEEEEECChhhcCCCccccccchHHH---HHHHHhCcCCcEEEEEeCCHHH
Confidence 4579999999998763222 222333 3333444556778888877654
No 467
>PRK09183 transposase/IS protein; Provisional
Probab=86.29 E-value=1.5 Score=47.44 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=30.2
Q ss_pred hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHH
Q psy13788 711 YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKE 759 (1034)
Q Consensus 711 ~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q 759 (1034)
...+.++++.+|+|+|||..+......... .+.+++|+ +..+|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~-~~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFT-TAADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEE-eHHHHHHH
Confidence 357889999999999999866554333322 25666665 34455443
No 468
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=86.12 E-value=0.47 Score=51.88 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=44.1
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P 752 (1034)
-++-|.+-+.++. +..-++..+|-|+|||..+.......+....-.++|.-=|
T Consensus 129 kt~~Q~~y~eai~-~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 129 KTPGQNMYPEAIE-EHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred cChhHHHHHHHHH-hcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 5789999888886 5666888899999999999888888887766677777777
No 469
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.05 E-value=5.1 Score=47.69 Aligned_cols=41 Identities=17% Similarity=0.379 Sum_probs=26.1
Q ss_pred ccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 815 YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 815 ~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
.....+++|+||||.|.. .....++..+ ...+..+++|+.+
T Consensus 114 ~~~~~KVvIIDEad~Lt~---~A~NALLK~L----EEpp~~t~FIL~t 154 (535)
T PRK08451 114 SMARFKIFIIDEVHMLTK---EAFNALLKTL----EEPPSYVKFILAT 154 (535)
T ss_pred ccCCeEEEEEECcccCCH---HHHHHHHHHH----hhcCCceEEEEEE
Confidence 446778999999999974 3334444333 2335567777665
No 470
>KOG0344|consensus
Probab=85.93 E-value=4 Score=47.62 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=46.2
Q ss_pred eecchhH-----HHHHHhhhc-CCCccccccccccccchhhhccCcccceEEEecCceeecCCCCeeeecChhhHHHHhh
Q psy13788 107 YVHIGIL-----DVLQIFGRA-GRPQYNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIFG 180 (1034)
Q Consensus 107 ~~h~~~~-----~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~gvn~pa~vii~~~~~~~~~~~~~~~~~~~~~~Qm~G 180 (1034)
++|++.. +..+.|..+ .-+..||..|++|.+ ..|||| ||. ||- +=+...|..++|
T Consensus 417 vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiD-----f~gvn~---VIn-----yD~------p~s~~syihrIG 477 (593)
T KOG0344|consen 417 VIHGERSQKQRDETMERFRIGKIWVLICTDLLARGID-----FKGVNL---VIN-----YDF------PQSDLSYIHRIG 477 (593)
T ss_pred eEecccchhHHHHHHHHHhccCeeEEEehhhhhcccc-----ccCcce---EEe-----cCC------CchhHHHHHHhh
Confidence 5566543 334555332 344558888888633 346663 443 662 122367777779
Q ss_pred ccCCCCccccceEEEECCccc
Q psy13788 181 RAGRPQYNTSGHATIITPHEK 201 (1034)
Q Consensus 181 RAGR~~~d~~G~~~i~~~~~~ 201 (1034)
|.||+|- .|.||.+-...+
T Consensus 478 RtgRag~--~g~Aitfytd~d 496 (593)
T KOG0344|consen 478 RTGRAGR--SGKAITFYTDQD 496 (593)
T ss_pred ccCCCCC--CcceEEEecccc
Confidence 9999986 899998877754
No 471
>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication. NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic.
Probab=85.91 E-value=1.7 Score=33.47 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=35.8
Q ss_pred CCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhh
Q psy13788 505 LKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAW 549 (1034)
Q Consensus 505 i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~ 549 (1034)
+++..+.+|.++|+ |+++++.++++++..+-. ++.....+...++
T Consensus 1 i~~~~~~~L~~~G~~s~e~la~~~~~eL~~i~g~~~e~a~~ii~~a~ 47 (50)
T TIGR01954 1 IDEEIAQLLVEEGFTTVEDLAYVPIDELLSIEGFDEETAKELINRAR 47 (50)
T ss_pred CCHHHHHHHHHcCCCCHHHHHccCHHHHhcCCCCCHHHHHHHHHHHH
Confidence 35778999999999 999999999999998754 4556666665554
No 472
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=85.89 E-value=0.99 Score=46.66 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=25.8
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L 756 (1034)
-+++++|||||||+.. ..++..+....+.+++.+.-..++
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~~~~~i~t~e~~~E~ 42 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKNKTHHILTIEDPIEF 42 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhcCCcEEEEEcCCccc
Confidence 4789999999999864 334445444334566666554443
No 473
>KOG1513|consensus
Probab=85.89 E-value=0.73 Score=54.85 Aligned_cols=156 Identities=18% Similarity=0.173 Sum_probs=83.3
Q ss_pred CChhHHHHH-------HHHhcCCC--cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 699 FNPIQTQIF-------HCLYHTDN--NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 699 ~~~~Q~~ai-------~~l~~~~~--~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
+...|.+++ +.++.+|. -.++.-..|.||--...-.|+....+ ..+++|++.=+..|--+..++++. .+
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk-GRKrAlW~SVSsDLKfDAERDL~D-ig 342 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK-GRKRALWFSVSSDLKFDAERDLRD-IG 342 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc-ccceeEEEEeccccccchhhchhh-cC
Confidence 445566655 33443443 36777667777743322234444333 268999999888887776676663 33
Q ss_pred hhcCCeEEEEcCCC----CccccccCCCcEEEECHhhHHHHHhccc--ccccc---------CcccEEEEecccccCC--
Q psy13788 770 ARLKKKVVELTGDV----TPDIQAISSASVIVTTPEKWDGVSRSWQ--NRNYV---------QSVALIIIDEIHLLGE-- 832 (1034)
Q Consensus 770 ~~~~~~v~~~~g~~----~~~~~~~~~~~IiV~Tpe~l~~l~~~~~--~~~~l---------~~l~~lViDEaH~l~~-- 832 (1034)
. .++.|..+..-. +.+....-+--|+++|...|..-.+... -+..+ .-=++||+||||.-.+
T Consensus 343 A-~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~ 421 (1300)
T KOG1513|consen 343 A-TGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLV 421 (1300)
T ss_pred C-CCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccc
Confidence 3 455555443211 1111111134689999877633322100 00001 1125899999997532
Q ss_pred --------CChhHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q psy13788 833 --------DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTAL 865 (1034)
Q Consensus 833 --------~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl 865 (1034)
..|..+..+-. .-++.|+|..|||=
T Consensus 422 p~~~~k~TKtG~tVLdLQk--------~LP~ARVVYASATG 454 (1300)
T KOG1513|consen 422 PTAGAKSTKTGKTVLDLQK--------KLPNARVVYASATG 454 (1300)
T ss_pred cccCCCcCcccHhHHHHHH--------hCCCceEEEeeccC
Confidence 23433333222 22578999999993
No 474
>KOG2373|consensus
Probab=85.85 E-value=1 Score=48.72 Aligned_cols=43 Identities=30% Similarity=0.403 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEE---cCcHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYI---APLKALVK 758 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi---~Pt~~L~~ 758 (1034)
|.-.++.+|||||||+-..-..+....+ +.++|+- .|.+-|+.
T Consensus 273 GElTvlTGpTGsGKTTFlsEYsLDL~~Q--GVnTLwgSFEi~n~rla~ 318 (514)
T KOG2373|consen 273 GELTVLTGPTGSGKTTFLSEYSLDLFTQ--GVNTLWGSFEIPNKRLAH 318 (514)
T ss_pred CceEEEecCCCCCceeEehHhhHHHHhh--hhhheeeeeecchHHHHH
Confidence 4458999999999996433344444444 5555543 36555554
No 475
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=85.84 E-value=1.3 Score=47.01 Aligned_cols=40 Identities=30% Similarity=0.226 Sum_probs=27.4
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhC----CCCeEEEEcC
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQC----PEAKVVYIAP 752 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~----~~~~~lvi~P 752 (1034)
.|.-+.+.+|+|+|||..+...+....... .+.+++|+.-
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 456789999999999987665554432221 1368888874
No 476
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=85.65 E-value=3.9 Score=51.32 Aligned_cols=33 Identities=6% Similarity=0.068 Sum_probs=25.9
Q ss_pred HhcccHHHHHHHHHHHHHHHhccCCCCCccccc
Q psy13788 460 LHRNNAIMAARFLKFALMFETKQWPHETPLRQI 492 (1034)
Q Consensus 460 ~~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~ql 492 (1034)
.-..|......+-.|.+.|.-+......||...
T Consensus 883 iD~~W~eHL~~md~Lr~~I~lr~y~QkdPl~eY 915 (1025)
T PRK12900 883 IDQKWREHLREIDSLREGINLRAYGQKDPLLEY 915 (1025)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHH
Confidence 345688888888888888888888777888766
No 477
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=85.62 E-value=6.1 Score=42.73 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=29.0
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
.|.-++|.+|+|+|||..++-.+.+...+ +.+++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 56679999999999998776666655543 67888888
No 478
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=85.58 E-value=4.3 Score=41.25 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=33.1
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLK 754 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~ 754 (1034)
...++.+..++|-|||.+++--+++.+.. +.+++++-=.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~--G~~V~ivQFlK 60 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH--GKKVGVVQFIK 60 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC--CCeEEEEEEec
Confidence 45689999999999999998888888766 67888876544
No 479
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=85.54 E-value=2.4 Score=48.70 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=16.7
Q ss_pred cEEEEcCCCChhhHHHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCF 736 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il 736 (1034)
.+++.+|.|+|||..+...+-
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 488999999999987655443
No 480
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=85.50 E-value=6.3 Score=43.97 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=27.0
Q ss_pred CChhHHHHHHHHh---cCCC---cEEEEcCCCChhhHHHHHHHHHHH
Q psy13788 699 FNPIQTQIFHCLY---HTDN---NVLLGAPTGSGKTIAAEITCFRVF 739 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~---~~~~---~vll~apTGsGKT~~~~l~il~~l 739 (1034)
..|+|...+..+. .+++ -.++.+|.|.||+..+..-+-..+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 3567777766553 2333 477999999999987655544443
No 481
>KOG2028|consensus
Probab=85.48 E-value=1.7 Score=47.64 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCC--cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHH
Q psy13788 704 TQIFHCLYHTDN--NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKE 759 (1034)
Q Consensus 704 ~~ai~~l~~~~~--~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q 759 (1034)
.-.+..+.++++ .+++.+|.|+|||..+-+.+-.. .....+.+=+.-|.+-+.+
T Consensus 150 ~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts--k~~SyrfvelSAt~a~t~d 205 (554)
T KOG2028|consen 150 DGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS--KKHSYRFVELSATNAKTND 205 (554)
T ss_pred chHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc--CCCceEEEEEeccccchHH
Confidence 334444554553 69999999999998654443322 1123445555566554444
No 482
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=85.45 E-value=6.7 Score=44.59 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=15.7
Q ss_pred cEEEEcCCCChhhHHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITC 735 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~i 735 (1034)
.+++.+|.|+|||..+..-+
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la 57 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFA 57 (355)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998664433
No 483
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=85.36 E-value=5.5 Score=46.22 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=30.9
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWKV 766 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~~ 766 (1034)
.+++++++|+|||+++.--+.....+ .+.+++++. +.|.-+.++...+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~-~g~kV~lV~~D~~R~~a~~QL~~~a~ 152 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK-QGKKVLLVACDLYRPAAIEQLKVLGQ 152 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh-CCCeEEEEeccccchHHHHHHHHHHH
Confidence 58899999999998765554443222 255665555 455555555555543
No 484
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=85.28 E-value=0.67 Score=53.48 Aligned_cols=57 Identities=26% Similarity=0.306 Sum_probs=41.7
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcC
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTG 781 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g 781 (1034)
++++.||||||||..+.+|-+... +..+||+=|--++........++ .|-+|..+.-
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----~~s~vv~D~Kge~~~~t~~~r~~-----~G~~V~v~nP 57 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----PGSVVVLDPKGENFELTSEHRRA-----LGRKVFVFDP 57 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----CCCEEEEccchhHHHHHHHHHHH-----cCCeEEEEcC
Confidence 478999999999999988865432 47889999999998765543332 4556666653
No 485
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=85.25 E-value=2.2 Score=52.98 Aligned_cols=68 Identities=16% Similarity=0.050 Sum_probs=53.9
Q ss_pred CCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcc
Q psy13788 926 PEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQM 1005 (1034)
Q Consensus 926 ~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~ 1005 (1034)
.++++++.+||..-++++++.|.++....+.. ..-+. |||.|+.++++.+.+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~---------------------------~~~~~-yh~~l~~~ekee~le 175 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSL---------------------------DVLVV-YHSALPTKEKEEALE 175 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCc---------------------------ceeee-eccccchHHHHHHHH
Confidence 46789999999999999999998876543311 11133 999999999988866
Q ss_pred cchhHhhcCCceEEEechhh
Q psy13788 1006 PKLAALSSKENQNVINRSTS 1025 (1034)
Q Consensus 1006 ~~l~~f~~g~i~VLVaT~~l 1025 (1034)
. |.+|..+|||+|+.+
T Consensus 176 --~--i~~gdfdIlitTs~F 191 (1187)
T COG1110 176 --R--IESGDFDILITTSQF 191 (1187)
T ss_pred --H--HhcCCccEEEEeHHH
Confidence 6 999999999999865
No 486
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=85.13 E-value=5.9 Score=47.91 Aligned_cols=21 Identities=43% Similarity=0.580 Sum_probs=16.8
Q ss_pred cEEEEcCCCChhhHHHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCF 736 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il 736 (1034)
-.++++|.|+|||.++-..+-
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999997766543
No 487
>KOG0339|consensus
Probab=85.12 E-value=8.9 Score=43.96 Aligned_cols=169 Identities=17% Similarity=0.224 Sum_probs=87.0
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccc--hhhhhhHHHhhcccc--------------CCc-
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKS--LNRIQSLVYDTAYHT--------------NEN- 66 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------~~~- 66 (1034)
+.++.++|+||..-+-| +==+.+-.+...+.+. -|-+-+++ ..++..++.+..-.| -.|
T Consensus 368 ~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpd---rQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~ 444 (731)
T KOG0339|consen 368 LSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPD---RQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQT 444 (731)
T ss_pred ceeeeEEEEechhhhhccccHHHHHHHHhhcCCc---ceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhhe
Confidence 47889999999999988 7777777777664322 23333332 222222222222222 112
Q ss_pred eEEeccCCcchhHHHHHHHHHHHHHHhhccccceec--------------cccc--ee-cchhH-----HHHHHhhhcCC
Q psy13788 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNA--------------KHGC--YV-HIGIL-----DVLQIFGRAGR 124 (1034)
Q Consensus 67 ~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~--~~-h~~~~-----~~~~~~~~~~~ 124 (1034)
|.| ++++..|.++.+.. +.++++.|..++-. ..|+ .. |-.+. ++...|.+...
T Consensus 445 V~V-~~s~~~Kl~wl~~~----L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~ 519 (731)
T KOG0339|consen 445 VSV-CPSEEKKLNWLLRH----LVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRK 519 (731)
T ss_pred eee-ccCcHHHHHHHHHH----hhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCC
Confidence 444 45555666665433 33333333221110 0222 22 33332 23334444333
Q ss_pred CccccccccccccchhhhccCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccH
Q psy13788 125 PQYNTSDLGRTASNYYIKHNDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKL 202 (1034)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~ 202 (1034)
++.....+++ -|...|. +||- ||- .++ +..+.|++||-||.|- .|.++-+.++.+.
T Consensus 520 ~VlvatDvaa---------rgldI~~ikTVvn-----yD~----ard--IdththrigrtgRag~--kGvayTlvTeKDa 577 (731)
T KOG0339|consen 520 PVLVATDVAA---------RGLDIPSIKTVVN-----YDF----ARD--IDTHTHRIGRTGRAGE--KGVAYTLVTEKDA 577 (731)
T ss_pred ceEEEeeHhh---------cCCCccccceeec-----ccc----cch--hHHHHHHhhhcccccc--cceeeEEechhhH
Confidence 3211112222 4677775 4552 441 133 4678999999999997 4888888777554
Q ss_pred H
Q psy13788 203 N 203 (1034)
Q Consensus 203 ~ 203 (1034)
+
T Consensus 578 ~ 578 (731)
T KOG0339|consen 578 E 578 (731)
T ss_pred H
Confidence 4
No 488
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=85.08 E-value=7.9 Score=47.62 Aligned_cols=52 Identities=29% Similarity=0.360 Sum_probs=32.3
Q ss_pred ecChhhHHHHhhccCCCCccccceEEEECCcc----------cHHHHHHHhc--CCcceecccccc
Q psy13788 169 HIGILDVLQIFGRAGRPQYNTSGHATIITPHE----------KLNHYLSLLT--NQIPIESNFVAN 222 (1034)
Q Consensus 169 ~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~----------~~~~y~~~~~--~~~~i~s~l~~~ 222 (1034)
+-+.-.+.|..||+||.|- .|.+..+.+.+ ....+...++ +.+||+|.....
T Consensus 488 p~s~ri~~q~~GRtGRqG~--~G~s~~~ls~eD~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 551 (745)
T TIGR00963 488 HESRRIDNQLRGRSGRQGD--PGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGLEDDEPIESKMVTR 551 (745)
T ss_pred CCcHHHHHHHhccccCCCC--CcceEEEEeccHHHHHhhhhHHHHHHHHHcCCCCCceeecHHHHH
Confidence 3445789999999999886 57766666542 2223333332 235777766543
No 489
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=85.06 E-value=3.8 Score=48.50 Aligned_cols=20 Identities=45% Similarity=0.680 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCChhhHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~ 732 (1034)
..+.+++.+|+|+|||..+-
T Consensus 215 ~p~GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAK 234 (512)
T ss_pred CCcceEEECCCCCcHHHHHH
Confidence 34679999999999998543
No 490
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.05 E-value=1.6 Score=49.34 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=29.0
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L 756 (1034)
.+..+++++|||||||+..- .++..+....+.+++.+--..++
T Consensus 121 ~~g~ili~G~tGSGKTT~l~-al~~~i~~~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLA-SMIDYINKNAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHHH-HHHHhhCcCCCCEEEEEcCChhh
Confidence 56789999999999998543 34444443335677776655554
No 491
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=85.03 E-value=3.3 Score=43.72 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=28.7
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt 753 (1034)
.|.-+.+.+|+|+|||..+.-.+...... +.+++|+.--
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 35568999999999998776666555443 6788887644
No 492
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=84.97 E-value=1.5 Score=49.30 Aligned_cols=55 Identities=22% Similarity=0.407 Sum_probs=39.6
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHH
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L 756 (1034)
+++.+.+.+..+...+.+++++++||||||...- .++..+. +..+++++--+.||
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~-al~~~i~--~~~riv~iEd~~El 217 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLS-ALLALVA--PDERIVLVEDAAEL 217 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH-HHHccCC--CCCcEEEECCccee
Confidence 5677888888777778899999999999998432 2233322 35677777777776
No 493
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=84.90 E-value=1.4 Score=49.13 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhc
Q psy13788 503 PILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWE 550 (1034)
Q Consensus 503 p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~ 550 (1034)
|++++.++++|.+.|| |+++|+.+++++|..+.. +++.+..+.+.++.
T Consensus 5 ~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g~~~~~a~~l~~~~~~ 54 (310)
T TIGR02236 5 PGVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARK 54 (310)
T ss_pred CCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhccCCCHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999876 56678888877753
No 494
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.88 E-value=1.4 Score=48.94 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=41.4
Q ss_pred CCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHH
Q psy13788 697 SHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L 756 (1034)
..+.+.|..-+..+...+++++++++||||||.. +.+++..+. +..+++.+--+.++
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip--~~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIP--PEERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCC--chhcEEEEeccccc
Confidence 3477888888877777899999999999999983 233333332 25677877777665
No 495
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.60 E-value=6.6 Score=47.95 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=16.1
Q ss_pred EEEEcCCCChhhHHHHHHH
Q psy13788 717 VLLGAPTGSGKTIAAEITC 735 (1034)
Q Consensus 717 vll~apTGsGKT~~~~l~i 735 (1034)
+++.+|.|+|||.++...+
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999776654
No 496
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=84.47 E-value=1.2 Score=53.88 Aligned_cols=59 Identities=29% Similarity=0.277 Sum_probs=44.7
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELT 780 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~ 780 (1034)
...++++.||||||||..+.+|-+..+ +.-+||+=|--|+...+.. +++. .|.+|..+.
T Consensus 157 g~~hvLviapTgSGKg~g~VIPnLL~~----~~S~VV~DpKGEl~~~Ta~-~R~~----~G~~V~vfd 215 (606)
T PRK13897 157 GFQHALLFAPTGSGKGVGFVIPNLLFW----EDSVVVHDIKLENYELTSG-WREK----QGQKVFVWE 215 (606)
T ss_pred CCceEEEEcCCCCCcceEEehhhHHhC----CCCEEEEeCcHHHHHHHHH-HHHH----CCCeEEEEe
Confidence 446899999999999999999987653 4678899999999877554 3332 455666654
No 497
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=84.44 E-value=2.3 Score=49.73 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=42.7
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC----CCeEEEEcCcHHHHHHHHH
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP----EAKVVYIAPLKALVKERVA 762 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~----~~~~lvi~Pt~~L~~q~~~ 762 (1034)
.-+-|-+++.. ..++-++|++..|||||.+++--+.-.+...+ +..+|++.|.+-...-+.+
T Consensus 213 IQkEQneIIR~--ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 213 IQKEQNEIIRF--EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred hhHhHHHHHhc--cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 44556665543 25667899999999999988765554444432 3559999999988765433
No 498
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=84.40 E-value=5.2 Score=48.64 Aligned_cols=66 Identities=9% Similarity=0.006 Sum_probs=45.6
Q ss_pred CCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcc
Q psy13788 926 PEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQM 1005 (1034)
Q Consensus 926 ~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~ 1005 (1034)
.++.++|-+.|.+..+.++..|...+.. -.+..|..+. ....+++
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~----------------------------------~~l~qg~~~~-~~~l~~~ 513 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPA----------------------------------EIVIQSEKNR-LASAEQQ 513 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCC----------------------------------CEEEeCCCcc-HHHHHHH
Confidence 3568999999999999888877553321 1344454321 1223433
Q ss_pred cchhHhhc----CCceEEEechhhhhccCCC
Q psy13788 1006 PKLAALSS----KENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 1006 ~~l~~f~~----g~i~VLVaT~~l~~Gv~Df 1032 (1034)
|+. |.-.||++|+.+-+|| |+
T Consensus 514 -----f~~~~~~~~~~vL~gt~sfweGv-Dv 538 (636)
T TIGR03117 514 -----FLALYANGIQPVLIAAGGAWTGI-DL 538 (636)
T ss_pred -----HHHhhcCCCCcEEEeCCcccccc-cc
Confidence 776 5789999999999999 98
No 499
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=84.34 E-value=2 Score=48.85 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=29.1
Q ss_pred hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcHHH
Q psy13788 711 YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLKAL 756 (1034)
Q Consensus 711 ~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~~L 756 (1034)
...+..+++++|||||||+.. -++++.+... +..+++.+--..|+
T Consensus 146 ~~~~GlilI~G~TGSGKTT~l-~al~~~i~~~~~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 146 LPAAGLGLICGETGSGKSTLA-ASIYQHCGETYPDRKIVTYEDPIEY 191 (372)
T ss_pred HhcCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCCceEEEEecCchh
Confidence 335568999999999999854 3455555432 34566666555444
No 500
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=84.34 E-value=1.5 Score=48.76 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHH
Q psy13788 704 TQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKA 755 (1034)
Q Consensus 704 ~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~ 755 (1034)
.+.+......+.++++++|||||||+..-. ++..+. +..+++++-...+
T Consensus 134 ~~~l~~~v~~~~~ili~G~tGsGKTTll~a-l~~~~~--~~~~iv~ied~~E 182 (308)
T TIGR02788 134 KEFLRLAIASRKNIIISGGTGSGKTTFLKS-LVDEIP--KDERIITIEDTRE 182 (308)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCHHHHHHH-HHccCC--ccccEEEEcCccc
Confidence 334455555788999999999999984322 222222 2445666544443
Done!