Query psy13788
Match_columns 1034
No_of_seqs 615 out of 3759
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 20:32:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 100.0 1E-152 3E-157 1498.8 87.7 971 2-1033 202-1256(1724)
2 4f92_B U5 small nuclear ribonu 100.0 8.3E-76 2.8E-80 770.9 58.1 592 3-659 1042-1723(1724)
3 2p6r_A Afuhel308 helicase; pro 100.0 3.3E-53 1.1E-57 525.4 33.1 465 3-559 134-692 (702)
4 2va8_A SSO2462, SKI2-type heli 100.0 2E-52 6.9E-57 520.2 36.2 465 3-555 141-715 (715)
5 2zj8_A DNA helicase, putative 100.0 3.7E-52 1.3E-56 517.5 37.4 467 3-553 134-704 (720)
6 2q0z_X Protein Pro2281; SEC63, 100.0 2.1E-48 7E-53 434.9 30.3 308 335-661 10-329 (339)
7 3im1_A Protein SNU246, PRE-mRN 100.0 1.7E-48 5.7E-53 434.1 28.9 306 335-659 6-325 (328)
8 2p6r_A Afuhel308 helicase; pro 100.0 6.2E-36 2.1E-40 370.6 24.8 309 694-1033 21-339 (702)
9 2zj8_A DNA helicase, putative 100.0 3.4E-36 1.2E-40 374.0 21.0 310 694-1033 19-337 (720)
10 2va8_A SSO2462, SKI2-type heli 100.0 3.6E-35 1.2E-39 365.0 29.3 312 694-1033 26-355 (715)
11 2db3_A ATP-dependent RNA helic 100.0 2.2E-34 7.6E-39 336.0 26.4 293 676-1033 62-367 (434)
12 3i5x_A ATP-dependent RNA helic 100.0 2.7E-33 9.2E-38 339.2 27.5 301 694-1033 90-409 (563)
13 2i4i_A ATP-dependent RNA helic 100.0 2.2E-33 7.4E-38 327.1 23.4 297 676-1033 21-343 (417)
14 3l9o_A ATP-dependent RNA helic 100.0 2.5E-33 8.6E-38 357.0 26.0 306 693-1033 180-547 (1108)
15 3sqw_A ATP-dependent RNA helic 100.0 4.4E-33 1.5E-37 337.5 23.5 301 694-1033 39-358 (579)
16 2xgj_A ATP-dependent RNA helic 100.0 1.4E-32 4.7E-37 347.2 28.9 303 693-1033 82-449 (1010)
17 4a4z_A Antiviral helicase SKI2 100.0 1.5E-32 5.2E-37 346.9 23.1 306 692-1033 34-442 (997)
18 3fht_A ATP-dependent RNA helic 100.0 6.4E-32 2.2E-36 314.0 24.9 297 676-1033 31-333 (412)
19 2v1x_A ATP-dependent DNA helic 100.0 4.5E-32 1.5E-36 325.5 23.9 283 689-1033 35-334 (591)
20 2j0s_A ATP-dependent RNA helic 100.0 4.3E-32 1.5E-36 315.3 22.2 293 676-1033 43-343 (410)
21 3fmp_B ATP-dependent RNA helic 100.0 1E-32 3.5E-37 327.0 16.4 285 694-1033 110-400 (479)
22 3pey_A ATP-dependent RNA helic 100.0 1.6E-31 5.6E-36 308.6 24.2 295 676-1033 11-310 (395)
23 1xti_A Probable ATP-dependent 100.0 1.4E-31 4.9E-36 308.8 23.6 293 676-1033 14-317 (391)
24 1s2m_A Putative ATP-dependent 100.0 2.9E-31 1E-35 307.3 24.9 292 676-1033 27-325 (400)
25 3eiq_A Eukaryotic initiation f 100.0 1.3E-31 4.3E-36 311.8 20.8 283 694-1033 58-347 (414)
26 3fho_A ATP-dependent RNA helic 100.0 4.2E-32 1.4E-36 322.9 16.0 282 695-1033 138-424 (508)
27 1oyw_A RECQ helicase, ATP-depe 100.0 2.2E-31 7.5E-36 316.5 22.0 276 689-1033 16-303 (523)
28 1hv8_A Putative ATP-dependent 100.0 4E-31 1.4E-35 302.1 21.7 289 676-1033 12-305 (367)
29 1fuu_A Yeast initiation factor 100.0 2E-31 6.9E-36 307.8 13.1 294 676-1033 27-326 (394)
30 2z0m_A 337AA long hypothetical 100.0 9.1E-30 3.1E-34 287.3 25.1 267 694-1033 12-283 (337)
31 3tbk_A RIG-I helicase domain; 100.0 3E-28 1E-32 294.6 28.3 163 699-867 5-176 (555)
32 4a2p_A RIG-I, retinoic acid in 100.0 3.2E-28 1.1E-32 294.5 26.6 164 698-867 7-178 (556)
33 3oiy_A Reverse gyrase helicase 100.0 1E-28 3.5E-33 287.1 20.4 271 691-1033 15-318 (414)
34 4a2q_A RIG-I, retinoic acid in 100.0 1.3E-27 4.5E-32 299.6 25.6 167 694-866 244-418 (797)
35 2ykg_A Probable ATP-dependent 100.0 3.3E-27 1.1E-31 293.4 28.1 167 694-866 9-184 (696)
36 4a2w_A RIG-I, retinoic acid in 99.9 2.6E-26 8.8E-31 290.8 27.2 167 694-866 244-418 (936)
37 4gl2_A Interferon-induced heli 99.9 4.4E-27 1.5E-31 292.4 19.2 166 699-867 8-193 (699)
38 2eyq_A TRCF, transcription-rep 99.9 5.4E-26 1.8E-30 291.6 27.9 276 689-1034 595-882 (1151)
39 3ly5_A ATP-dependent RNA helic 99.9 8.7E-27 3E-31 252.4 17.2 170 694-873 72-251 (262)
40 4ddu_A Reverse gyrase; topoiso 99.9 3.2E-26 1.1E-30 291.6 24.6 271 692-1034 73-376 (1104)
41 1gm5_A RECG; helicase, replica 99.9 5.8E-27 2E-31 286.7 15.3 281 692-1033 363-656 (780)
42 1gku_B Reverse gyrase, TOP-RG; 99.9 2.7E-27 9.2E-32 302.0 12.4 273 690-1033 50-340 (1054)
43 1wp9_A ATP-dependent RNA helic 99.9 1.4E-25 4.6E-30 266.4 23.7 158 698-867 9-168 (494)
44 2oca_A DAR protein, ATP-depend 99.9 2.6E-25 9E-30 265.6 20.8 276 698-1034 113-416 (510)
45 3fe2_A Probable ATP-dependent 99.9 2.6E-25 8.9E-30 238.2 15.8 181 676-873 35-226 (242)
46 3iuy_A Probable ATP-dependent 99.9 1.8E-25 6.1E-30 237.2 14.0 186 664-867 14-210 (228)
47 1wrb_A DJVLGB; RNA helicase, D 99.9 2.8E-24 9.7E-29 231.8 20.8 186 675-873 28-228 (253)
48 3fmo_B ATP-dependent RNA helic 99.9 1.1E-24 3.7E-29 240.2 17.6 185 676-874 98-287 (300)
49 1tf5_A Preprotein translocase 99.9 1.4E-24 4.6E-29 259.7 18.1 132 693-831 79-216 (844)
50 2xau_A PRE-mRNA-splicing facto 99.9 8.2E-24 2.8E-28 261.0 25.2 286 697-1033 92-386 (773)
51 2jlq_A Serine protease subunit 99.9 1.7E-24 5.9E-29 253.0 18.2 251 695-1033 1-251 (451)
52 2fwr_A DNA repair protein RAD2 99.9 5.9E-25 2E-29 260.0 12.5 257 698-1033 93-411 (472)
53 2oxc_A Probable ATP-dependent 99.9 1.5E-24 5.2E-29 230.3 14.4 176 676-867 30-210 (230)
54 1vec_A ATP-dependent RNA helic 99.9 5E-24 1.7E-28 222.3 16.3 176 676-867 9-189 (206)
55 2fsf_A Preprotein translocase 99.9 1.3E-23 4.3E-28 250.5 21.7 131 694-831 71-207 (853)
56 2pl3_A Probable ATP-dependent 99.9 9.5E-24 3.2E-28 225.2 16.7 183 676-874 31-222 (236)
57 2whx_A Serine protease/ntpase/ 99.9 7.7E-24 2.6E-28 254.8 17.9 249 697-1033 170-418 (618)
58 3ber_A Probable ATP-dependent 99.9 7.9E-24 2.7E-28 227.2 15.9 182 676-873 49-236 (249)
59 3dkp_A Probable ATP-dependent 99.9 3.7E-24 1.3E-28 229.7 12.9 184 676-875 35-228 (245)
60 3h1t_A Type I site-specific re 99.9 9E-24 3.1E-28 256.7 17.7 285 698-1033 178-516 (590)
61 1q0u_A Bstdead; DEAD protein, 99.9 6.7E-24 2.3E-28 223.6 14.3 175 676-867 10-193 (219)
62 1qde_A EIF4A, translation init 99.9 1.3E-23 4.3E-28 222.3 15.5 175 676-867 20-198 (224)
63 3bor_A Human initiation factor 99.9 9.8E-24 3.4E-28 225.1 14.2 175 676-867 36-216 (237)
64 2gxq_A Heat resistant RNA depe 99.9 1.1E-23 3.9E-28 219.7 14.1 181 676-875 7-196 (207)
65 1nkt_A Preprotein translocase 99.9 5.3E-23 1.8E-27 245.2 20.7 132 693-831 107-244 (922)
66 1t6n_A Probable ATP-dependent 99.9 2.2E-23 7.7E-28 219.7 15.2 182 676-873 20-209 (220)
67 2wv9_A Flavivirin protease NS2 99.9 1.2E-23 4E-28 254.6 13.3 249 698-1033 215-473 (673)
68 3o8b_A HCV NS3 protease/helica 99.9 1.4E-23 4.9E-28 249.5 13.6 238 700-1033 219-456 (666)
69 2v6i_A RNA helicase; membrane, 99.9 1.5E-22 5.3E-27 234.9 21.0 234 713-1033 1-234 (431)
70 3rc3_A ATP-dependent RNA helic 99.9 8E-23 2.7E-27 246.4 18.8 231 713-1032 154-388 (677)
71 1yks_A Genome polyprotein [con 99.9 5E-23 1.7E-27 239.4 14.7 229 712-1033 6-240 (440)
72 2z83_A Helicase/nucleoside tri 99.9 9.9E-23 3.4E-27 238.5 16.9 239 708-1033 15-253 (459)
73 3dmq_A RNA polymerase-associat 99.8 3.3E-20 1.1E-24 235.1 20.6 157 698-866 153-317 (968)
74 1z63_A Helicase of the SNF2/RA 99.8 8.5E-20 2.9E-24 217.3 18.1 150 698-867 37-189 (500)
75 3b6e_A Interferon-induced heli 99.8 2.5E-19 8.7E-24 187.9 14.1 162 698-864 33-216 (216)
76 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 8.1E-19 2.8E-23 220.3 18.4 152 698-867 271-440 (1038)
77 1rif_A DAR protein, DNA helica 99.8 2.9E-18 1E-22 187.7 16.0 153 698-868 113-265 (282)
78 3llm_A ATP-dependent RNA helic 99.8 1.5E-17 5E-22 176.8 18.2 165 699-877 62-229 (235)
79 2ipc_A Preprotein translocase 99.7 2.8E-16 9.4E-21 186.7 21.8 133 692-831 74-215 (997)
80 1z3i_X Similar to RAD54-like; 99.7 1.5E-15 5.2E-20 184.9 27.0 153 698-866 55-231 (644)
81 3mwy_W Chromo domain-containin 99.7 5.2E-16 1.8E-20 193.9 21.5 152 698-866 236-406 (800)
82 2fz4_A DNA repair protein RAD2 99.7 1.9E-16 6.4E-21 168.0 14.5 139 698-869 93-232 (237)
83 2xgj_A ATP-dependent RNA helic 99.7 9.4E-17 3.2E-21 203.0 13.5 115 104-229 407-530 (1010)
84 3jux_A Protein translocase sub 99.6 3.9E-15 1.3E-19 173.9 20.8 130 694-830 72-257 (822)
85 3crv_A XPD/RAD3 related DNA he 99.6 1.4E-14 4.8E-19 173.3 21.8 128 698-832 3-187 (551)
86 2vl7_A XPD; helicase, unknown 99.6 1.2E-14 4E-19 173.4 20.8 126 695-831 5-188 (540)
87 3l9o_A ATP-dependent RNA helic 99.6 2.3E-15 8E-20 192.0 13.0 117 104-231 505-630 (1108)
88 4a4z_A Antiviral helicase SKI2 99.6 1.6E-14 5.3E-19 182.8 17.7 116 104-230 400-525 (997)
89 1c4o_A DNA nucleotide excision 99.6 1E-13 3.5E-18 168.5 22.3 162 817-1033 324-506 (664)
90 2xau_A PRE-mRNA-splicing facto 99.5 3.2E-13 1.1E-17 166.6 15.6 206 107-394 343-562 (773)
91 2d7d_A Uvrabc system protein B 99.4 5.2E-12 1.8E-16 153.5 24.7 162 819-1033 332-512 (661)
92 4a15_A XPD helicase, ATP-depen 99.4 1.1E-12 3.8E-17 158.0 18.1 81 699-781 4-87 (620)
93 3rc3_A ATP-dependent RNA helic 99.3 4.3E-12 1.5E-16 153.1 13.7 189 5-218 237-463 (677)
94 3i5x_A ATP-dependent RNA helic 99.1 2.6E-10 8.7E-15 137.5 13.3 172 4-208 223-457 (563)
95 3fht_A ATP-dependent RNA helic 98.9 4.8E-09 1.7E-13 120.9 12.9 68 133-207 318-386 (412)
96 3sqw_A ATP-dependent RNA helic 98.9 5.9E-09 2E-13 125.8 13.2 171 4-207 172-405 (579)
97 3eiq_A Eukaryotic initiation f 98.9 3E-09 1E-13 122.8 8.7 164 5-207 181-394 (414)
98 3pey_A ATP-dependent RNA helic 98.8 8E-09 2.7E-13 118.2 12.1 68 133-207 295-363 (395)
99 2i4i_A ATP-dependent RNA helic 98.8 6.9E-09 2.4E-13 119.8 10.7 165 5-205 173-388 (417)
100 1s2m_A Putative ATP-dependent 98.8 9.3E-09 3.2E-13 118.0 11.5 163 5-206 161-371 (400)
101 1oyw_A RECQ helicase, ATP-depe 98.8 3.1E-08 1.1E-12 117.4 13.7 67 132-211 287-354 (523)
102 3fmp_B ATP-dependent RNA helic 98.8 1.9E-09 6.5E-14 127.0 2.8 70 131-207 383-453 (479)
103 2j0s_A ATP-dependent RNA helic 98.7 2.3E-08 8E-13 115.1 11.5 59 133-204 328-387 (410)
104 1hv8_A Putative ATP-dependent 98.7 2.9E-08 9.9E-13 112.2 11.3 162 5-205 145-350 (367)
105 3fho_A ATP-dependent RNA helic 98.7 6.9E-09 2.4E-13 122.9 6.2 59 134-199 410-469 (508)
106 2db3_A ATP-dependent RNA helic 98.7 4.4E-08 1.5E-12 113.6 11.2 158 5-199 201-406 (434)
107 1xti_A Probable ATP-dependent 98.7 2.9E-08 9.9E-13 113.4 9.6 62 133-207 302-364 (391)
108 2v1x_A ATP-dependent DNA helic 98.7 1.2E-07 4.1E-12 113.6 14.3 67 131-210 317-384 (591)
109 2hjv_A ATP-dependent RNA helic 98.7 2.8E-08 9.7E-13 98.4 7.5 77 917-1033 26-102 (163)
110 1fuk_A Eukaryotic initiation f 98.6 4.1E-08 1.4E-12 97.4 8.3 77 917-1033 21-97 (165)
111 2rb4_A ATP-dependent RNA helic 98.6 2.4E-08 8.3E-13 100.2 6.7 78 916-1033 24-101 (175)
112 1yks_A Genome polyprotein [con 98.6 4.2E-08 1.4E-12 113.6 9.6 165 5-197 97-296 (440)
113 1fuu_A Yeast initiation factor 98.6 5.1E-09 1.7E-13 119.9 1.4 60 131-203 309-369 (394)
114 1t5i_A C_terminal domain of A 98.6 3.3E-08 1.1E-12 98.8 6.9 78 916-1033 21-98 (172)
115 3eaq_A Heat resistant RNA depe 98.6 4.6E-08 1.6E-12 101.3 7.6 77 917-1033 22-98 (212)
116 2jgn_A DBX, DDX3, ATP-dependen 98.6 2.4E-08 8.3E-13 101.0 5.3 79 916-1033 35-113 (185)
117 3oiy_A Reverse gyrase helicase 98.6 6.7E-08 2.3E-12 111.5 9.7 53 138-199 308-364 (414)
118 2z0m_A 337AA long hypothetical 98.6 6.1E-08 2.1E-12 108.2 8.8 55 131-198 266-321 (337)
119 2p6n_A ATP-dependent RNA helic 98.5 1.1E-07 3.8E-12 96.6 7.8 77 916-1033 45-121 (191)
120 2whx_A Serine protease/ntpase/ 98.5 2E-07 6.7E-12 112.1 10.6 167 5-198 275-476 (618)
121 2jlq_A Serine protease subunit 98.5 3E-07 1E-11 106.9 10.4 167 5-199 108-310 (451)
122 3i32_A Heat resistant RNA depe 98.4 1.6E-07 5.5E-12 102.2 6.7 77 917-1033 19-95 (300)
123 2v6i_A RNA helicase; membrane, 98.4 8E-07 2.8E-11 102.6 12.4 165 5-199 91-290 (431)
124 2z83_A Helicase/nucleoside tri 98.4 1.8E-07 6.1E-12 109.1 6.6 68 131-200 236-313 (459)
125 3o8b_A HCV NS3 protease/helica 98.4 1.2E-07 4.2E-12 113.0 4.9 165 5-200 316-514 (666)
126 1gm5_A RECG; helicase, replica 98.4 5E-07 1.7E-11 110.7 10.3 72 107-199 618-696 (780)
127 2yjt_D ATP-dependent RNA helic 97.8 3.6E-08 1.2E-12 98.4 0.0 69 926-1033 29-97 (170)
128 2wv9_A Flavivirin protease NS2 98.4 9E-07 3.1E-11 107.1 11.2 65 131-197 456-530 (673)
129 1wp9_A ATP-dependent RNA helic 98.4 1.8E-06 6.3E-11 101.2 13.8 55 133-201 421-476 (494)
130 1w36_D RECD, exodeoxyribonucle 98.3 2.9E-06 9.8E-11 102.1 12.9 145 700-863 151-297 (608)
131 4gl2_A Interferon-induced heli 98.2 1.6E-06 5.6E-11 107.1 9.2 53 132-199 465-518 (699)
132 2rb4_A ATP-dependent RNA helic 98.2 5.9E-06 2E-10 82.6 11.3 68 133-207 86-154 (175)
133 2eyq_A TRCF, transcription-rep 98.2 3.5E-06 1.2E-10 108.4 10.3 55 133-200 866-922 (1151)
134 2fwr_A DNA repair protein RAD2 98.1 4.7E-06 1.6E-10 97.7 8.7 54 134-199 397-453 (472)
135 4a2p_A RIG-I, retinoic acid in 98.1 3.7E-06 1.3E-10 100.7 7.6 56 132-202 454-510 (556)
136 2hjv_A ATP-dependent RNA helic 98.1 2.9E-05 1E-09 76.4 12.6 62 133-207 87-149 (163)
137 1t5i_A C_terminal domain of A 98.0 1E-05 3.5E-10 80.5 9.0 62 133-207 83-145 (172)
138 3tbk_A RIG-I helicase domain; 98.0 4.9E-06 1.7E-10 99.6 7.7 56 132-202 453-509 (555)
139 1fuk_A Eukaryotic initiation f 98.0 1.7E-05 5.7E-10 78.4 10.1 62 133-207 82-144 (165)
140 2ykg_A Probable ATP-dependent 97.9 1.6E-05 5.4E-10 98.1 10.2 56 132-202 462-518 (696)
141 4a2q_A RIG-I, retinoic acid in 97.9 8.8E-06 3E-10 101.7 7.2 56 131-201 694-750 (797)
142 2jgn_A DBX, DDX3, ATP-dependen 97.9 2.6E-05 8.8E-10 78.6 9.1 109 63-207 45-160 (185)
143 3h1t_A Type I site-specific re 97.9 4.4E-05 1.5E-09 92.1 12.8 40 6-49 301-340 (590)
144 3eaq_A Heat resistant RNA depe 97.9 5.8E-05 2E-09 77.8 11.5 61 133-206 83-144 (212)
145 1c4o_A DNA nucleotide excision 97.9 2.7E-05 9.3E-10 94.5 10.2 57 135-201 493-551 (664)
146 1gku_B Reverse gyrase, TOP-RG; 97.9 1.6E-05 5.4E-10 101.7 8.5 29 5-34 173-201 (1054)
147 4b3f_X DNA-binding protein smu 97.8 4.9E-05 1.7E-09 92.4 11.4 67 698-766 189-255 (646)
148 2oca_A DAR protein, ATP-depend 97.7 6.9E-05 2.3E-09 88.6 10.3 42 3-50 221-262 (510)
149 2xzl_A ATP-dependent helicase 97.7 0.00013 4.3E-09 90.2 11.5 69 696-766 358-426 (802)
150 2d7d_A Uvrabc system protein B 97.7 9.2E-05 3.2E-09 89.8 10.0 57 135-201 499-557 (661)
151 2gk6_A Regulator of nonsense t 97.6 0.00012 4.2E-09 88.3 11.1 67 697-765 179-245 (624)
152 3upu_A ATP-dependent DNA helic 97.6 0.0002 6.9E-09 83.2 12.4 65 696-761 23-91 (459)
153 4ddu_A Reverse gyrase; topoiso 97.6 0.0002 6.7E-09 91.6 13.2 30 171-200 461-492 (1104)
154 4a2w_A RIG-I, retinoic acid in 97.6 0.00012 4E-09 92.7 10.6 56 131-201 694-750 (936)
155 3i32_A Heat resistant RNA depe 97.6 0.00018 6.1E-09 78.1 10.3 108 63-206 27-141 (300)
156 2wjy_A Regulator of nonsense t 97.5 0.00022 7.4E-09 87.9 10.6 67 697-765 355-421 (800)
157 2p6n_A ATP-dependent RNA helic 97.5 0.00036 1.2E-08 70.5 10.3 55 133-200 106-161 (191)
158 3e1s_A Exodeoxyribonuclease V, 97.5 0.0005 1.7E-08 81.7 12.8 60 699-761 190-249 (574)
159 3dmq_A RNA polymerase-associat 97.4 0.00047 1.6E-08 87.4 11.9 56 133-199 558-614 (968)
160 1z5z_A Helicase of the SNF2/RA 97.4 0.00019 6.7E-09 76.8 7.2 70 926-1033 111-182 (271)
161 2yjt_D ATP-dependent RNA helic 96.4 3E-05 1E-09 77.0 0.0 61 131-204 80-141 (170)
162 1z63_A Helicase of the SNF2/RA 97.2 0.0017 5.7E-08 76.4 13.0 56 145-211 407-465 (500)
163 2o0j_A Terminase, DNA packagin 96.8 0.016 5.5E-07 64.6 15.5 119 698-832 163-287 (385)
164 3lfu_A DNA helicase II; SF1 he 96.5 0.0055 1.9E-07 74.5 10.0 69 697-768 8-78 (647)
165 3cpe_A Terminase, DNA packagin 96.4 0.025 8.6E-07 67.6 14.8 71 699-770 164-234 (592)
166 1wcn_A Transcription elongatio 96.0 0.0047 1.6E-07 50.4 3.7 55 488-552 8-64 (70)
167 3ec2_A DNA replication protein 95.7 0.029 9.9E-07 55.6 9.0 58 700-759 16-81 (180)
168 1uaa_A REP helicase, protein ( 95.3 0.026 9E-07 68.7 8.3 80 699-781 3-86 (673)
169 1pjr_A PCRA; DNA repair, DNA r 95.1 0.039 1.3E-06 67.7 9.2 82 697-781 10-94 (724)
170 2orw_A Thymidine kinase; TMTK, 94.7 0.068 2.3E-06 53.2 8.0 39 714-754 3-41 (184)
171 3vkw_A Replicase large subunit 94.2 0.054 1.9E-06 61.1 6.7 85 716-831 163-247 (446)
172 3u4q_A ATP-dependent helicase/ 94.0 0.083 2.9E-06 68.7 8.9 69 699-770 11-83 (1232)
173 2b8t_A Thymidine kinase; deoxy 93.9 0.2 6.8E-06 51.3 9.5 40 713-754 11-50 (223)
174 3te6_A Regulatory protein SIR3 93.8 0.29 9.9E-06 53.0 11.2 47 817-869 131-177 (318)
175 1z5z_A Helicase of the SNF2/RA 93.8 0.14 4.6E-06 54.5 8.5 44 145-199 178-223 (271)
176 3jux_A Protein translocase sub 93.8 0.33 1.1E-05 57.7 12.2 55 168-224 557-623 (822)
177 2chg_A Replication factor C sm 93.7 0.23 7.8E-06 50.3 10.0 18 715-732 39-56 (226)
178 1xx6_A Thymidine kinase; NESG, 93.7 0.12 4E-06 51.7 7.4 40 713-754 7-46 (191)
179 1a5t_A Delta prime, HOLB; zinc 93.7 0.49 1.7E-05 51.9 13.2 39 699-737 3-47 (334)
180 2kjq_A DNAA-related protein; s 93.5 0.14 4.7E-06 49.0 7.1 20 713-732 35-54 (149)
181 2z4s_A Chromosomal replication 93.4 0.55 1.9E-05 53.6 13.3 40 714-753 130-169 (440)
182 3bos_A Putative DNA replicatio 93.0 0.81 2.8E-05 46.9 12.9 21 713-733 51-71 (242)
183 2qby_B CDC6 homolog 3, cell di 92.9 0.27 9.3E-06 54.9 9.7 21 714-734 45-65 (384)
184 2a1j_A DNA repair endonuclease 92.9 0.13 4.6E-06 40.8 5.0 46 503-549 10-56 (63)
185 2dr3_A UPF0273 protein PH0284; 92.8 0.43 1.5E-05 49.4 10.4 39 712-752 21-59 (247)
186 2j9r_A Thymidine kinase; TK1, 92.6 0.37 1.3E-05 48.6 9.1 41 713-755 27-67 (214)
187 1iqp_A RFCS; clamp loader, ext 92.4 0.29 9.9E-06 53.2 8.8 18 716-733 48-65 (327)
188 1l8q_A Chromosomal replication 92.3 0.6 2.1E-05 50.8 11.3 36 715-752 38-73 (324)
189 2zpa_A Uncharacterized protein 92.0 0.17 5.8E-06 60.1 6.7 115 698-867 175-290 (671)
190 2w0m_A SSO2452; RECA, SSPF, un 92.0 1.1 3.8E-05 45.6 12.4 37 713-751 22-58 (235)
191 4a1f_A DNAB helicase, replicat 92.0 0.9 3.1E-05 49.5 11.9 143 712-864 44-205 (338)
192 3vfd_A Spastin; ATPase, microt 91.9 0.3 1E-05 54.8 8.4 20 714-733 148-167 (389)
193 2r6a_A DNAB helicase, replicat 91.8 0.53 1.8E-05 54.1 10.5 141 713-863 202-362 (454)
194 1d2n_A N-ethylmaleimide-sensit 91.8 0.71 2.4E-05 48.8 10.8 20 714-733 64-83 (272)
195 1z00_B DNA repair endonuclease 91.7 0.2 6.9E-06 42.3 4.9 46 503-549 24-70 (84)
196 3ly5_A ATP-dependent RNA helic 91.6 0.059 2E-06 57.1 2.0 44 5-51 199-243 (262)
197 2v1u_A Cell division control p 91.5 0.57 1.9E-05 52.2 10.2 22 713-734 43-64 (387)
198 1njg_A DNA polymerase III subu 91.5 1.5 5E-05 44.8 12.7 18 716-733 47-64 (250)
199 1b22_A DNA repair protein RAD5 91.2 0.12 4.2E-06 46.4 3.3 48 504-551 32-81 (114)
200 2q6t_A DNAB replication FORK h 91.2 0.69 2.4E-05 52.9 10.5 141 713-863 199-361 (444)
201 4b4t_J 26S protease regulatory 91.1 0.65 2.2E-05 51.7 9.8 18 714-731 182-199 (405)
202 1w4r_A Thymidine kinase; type 90.9 0.48 1.6E-05 47.1 7.5 39 713-753 19-57 (195)
203 3syl_A Protein CBBX; photosynt 90.5 0.96 3.3E-05 48.7 10.5 20 714-733 67-86 (309)
204 3kl4_A SRP54, signal recogniti 90.5 1.1 3.8E-05 50.5 11.1 122 715-866 98-224 (433)
205 1sxj_B Activator 1 37 kDa subu 90.1 0.41 1.4E-05 51.8 7.1 18 716-733 44-61 (323)
206 3eie_A Vacuolar protein sortin 90.0 0.64 2.2E-05 50.6 8.5 21 714-734 51-71 (322)
207 1sxj_C Activator 1 40 kDa subu 90.0 0.53 1.8E-05 51.7 7.8 27 707-733 37-65 (340)
208 3iuy_A Probable ATP-dependent 89.8 0.075 2.6E-06 54.8 0.7 44 5-51 165-209 (228)
209 1sxj_A Activator 1 95 kDa subu 89.7 2.9 0.0001 48.7 14.3 20 715-734 78-97 (516)
210 3h4m_A Proteasome-activating n 89.7 0.43 1.5E-05 50.8 6.7 20 713-732 50-69 (285)
211 3e2i_A Thymidine kinase; Zn-bi 89.7 0.48 1.6E-05 47.7 6.4 41 713-755 27-67 (219)
212 2qz4_A Paraplegin; AAA+, SPG7, 89.6 1.4 4.7E-05 46.1 10.5 21 713-733 38-58 (262)
213 3d8b_A Fidgetin-like protein 1 89.6 0.42 1.4E-05 53.0 6.6 21 713-733 116-136 (357)
214 3mwy_W Chromo domain-containin 89.5 1.1 3.6E-05 55.6 10.8 52 137-200 631-684 (800)
215 3u61_B DNA polymerase accessor 89.4 0.71 2.4E-05 50.2 8.3 15 817-831 104-118 (324)
216 1wrb_A DJVLGB; RNA helicase, D 89.2 0.085 2.9E-06 55.4 0.6 47 5-51 172-220 (253)
217 1vec_A ATP-dependent RNA helic 89.2 0.12 4.1E-06 52.1 1.7 44 5-51 144-188 (206)
218 1fnn_A CDC6P, cell division co 89.2 1.1 3.7E-05 50.0 9.8 35 716-751 46-80 (389)
219 4b4t_L 26S protease subunit RP 88.9 0.84 2.9E-05 51.6 8.4 18 714-731 215-232 (437)
220 3fe2_A Probable ATP-dependent 88.5 0.086 2.9E-06 54.9 0.0 44 5-51 174-218 (242)
221 2qby_A CDC6 homolog 1, cell di 88.5 1.5 5.1E-05 48.6 10.4 37 714-751 45-83 (386)
222 3bgw_A DNAB-like replicative h 88.5 1.2 4E-05 50.8 9.5 141 713-864 196-359 (444)
223 3dm5_A SRP54, signal recogniti 88.2 0.98 3.4E-05 51.0 8.4 49 715-765 101-151 (443)
224 1z3i_X Similar to RAD54-like; 88.2 1.5 5E-05 52.8 10.5 45 144-199 481-527 (644)
225 1xp8_A RECA protein, recombina 88.1 0.74 2.5E-05 50.9 7.3 39 713-753 73-111 (366)
226 2gxq_A Heat resistant RNA depe 88.0 0.12 4.3E-06 52.0 0.8 44 5-51 142-186 (207)
227 3bh0_A DNAB-like replicative h 88.0 1 3.4E-05 48.9 8.1 140 713-863 67-229 (315)
228 4b4t_M 26S protease regulatory 87.7 0.76 2.6E-05 51.9 7.1 18 714-731 215-232 (434)
229 2zts_A Putative uncharacterize 87.6 0.63 2.1E-05 48.2 6.1 38 713-751 29-66 (251)
230 1u9l_A Transcription elongatio 87.6 0.33 1.1E-05 39.4 2.9 48 503-550 12-61 (70)
231 4b4t_I 26S protease regulatory 87.5 1.3 4.4E-05 49.6 8.6 18 714-731 216-233 (437)
232 1sxj_D Activator 1 41 kDa subu 87.4 0.83 2.8E-05 50.2 7.2 28 706-733 48-77 (353)
233 4b4t_K 26S protease regulatory 87.4 0.99 3.4E-05 50.9 7.8 18 714-731 206-223 (428)
234 1u94_A RECA protein, recombina 87.2 0.73 2.5E-05 50.8 6.5 39 713-753 62-100 (356)
235 3dkp_A Probable ATP-dependent 87.2 0.33 1.1E-05 50.5 3.5 46 5-50 173-220 (245)
236 3hu3_A Transitional endoplasmi 87.1 1.2 4.1E-05 51.5 8.5 21 713-733 237-257 (489)
237 2qp9_X Vacuolar protein sortin 87.0 0.8 2.7E-05 50.6 6.7 21 714-734 84-104 (355)
238 2kz3_A Putative uncharacterize 86.9 1.2 4E-05 37.4 5.9 42 503-544 10-53 (83)
239 1q0u_A Bstdead; DEAD protein, 86.9 0.15 5.3E-06 52.0 0.8 43 5-50 148-191 (219)
240 1qde_A EIF4A, translation init 86.6 0.16 5.6E-06 51.9 0.7 44 5-51 153-197 (224)
241 1sxj_E Activator 1 40 kDa subu 86.5 1.5 5.2E-05 48.1 8.8 18 716-733 38-55 (354)
242 2cvh_A DNA repair and recombin 86.4 1.8 6.1E-05 43.7 8.6 35 713-752 19-53 (220)
243 1w5s_A Origin recognition comp 86.3 4.1 0.00014 45.5 12.4 21 714-734 50-72 (412)
244 2ehv_A Hypothetical protein PH 86.0 0.94 3.2E-05 46.9 6.4 38 712-751 28-66 (251)
245 2gno_A DNA polymerase III, gam 85.9 5.7 0.0002 42.6 12.6 43 813-862 77-119 (305)
246 1jr3_A DNA polymerase III subu 85.8 3.3 0.00011 45.6 11.2 19 716-734 40-58 (373)
247 3bor_A Human initiation factor 85.7 0.2 6.8E-06 51.9 0.9 44 5-51 171-215 (237)
248 2chq_A Replication factor C sm 85.7 0.71 2.4E-05 49.9 5.4 18 716-733 40-57 (319)
249 4b4t_H 26S protease regulatory 85.7 1.8 6.1E-05 49.0 8.6 19 713-731 242-260 (467)
250 3t15_A Ribulose bisphosphate c 85.5 1.6 5.4E-05 46.7 7.9 20 715-734 37-56 (293)
251 1xwi_A SKD1 protein; VPS4B, AA 85.4 0.7 2.4E-05 50.3 5.1 18 715-732 46-63 (322)
252 2pl3_A Probable ATP-dependent 85.4 0.17 6E-06 52.3 0.2 43 5-50 169-212 (236)
253 1n0w_A DNA repair protein RAD5 85.1 1.9 6.5E-05 44.3 8.2 40 713-752 23-66 (243)
254 2oxc_A Probable ATP-dependent 84.5 0.28 9.6E-06 50.5 1.3 44 5-51 164-209 (230)
255 3pvs_A Replication-associated 84.4 1.3 4.5E-05 50.5 7.0 18 715-732 51-68 (447)
256 3hr8_A Protein RECA; alpha and 84.3 1.5 5E-05 48.3 7.0 41 713-755 60-100 (356)
257 3io5_A Recombination and repai 83.9 0.8 2.7E-05 49.1 4.5 91 716-831 30-124 (333)
258 3n70_A Transport activator; si 83.7 0.76 2.6E-05 43.3 3.9 22 711-732 21-42 (145)
259 3pfi_A Holliday junction ATP-d 83.1 1.8 6.1E-05 47.2 7.2 19 715-733 56-74 (338)
260 3ber_A Probable ATP-dependent 82.7 0.28 9.6E-06 51.3 0.4 44 5-51 184-228 (249)
261 2zr9_A Protein RECA, recombina 82.2 0.89 3.1E-05 50.0 4.3 39 713-753 60-98 (349)
262 3co5_A Putative two-component 81.9 0.83 2.9E-05 42.9 3.4 20 712-731 25-44 (143)
263 1hqc_A RUVB; extended AAA-ATPa 81.6 1.9 6.5E-05 46.6 6.7 20 714-733 38-57 (324)
264 3cmu_A Protein RECA, recombina 81.3 1.4 4.7E-05 58.9 6.1 47 707-755 1415-1466(2050)
265 1p9r_A General secretion pathw 80.2 2.2 7.7E-05 48.0 6.7 50 699-750 151-201 (418)
266 3k1j_A LON protease, ATP-depen 79.8 7.4 0.00025 46.2 11.5 26 707-732 53-78 (604)
267 2oap_1 GSPE-2, type II secreti 78.0 1.5 5E-05 50.9 4.4 32 699-730 245-276 (511)
268 2ce7_A Cell division protein F 77.6 4.4 0.00015 46.4 8.2 19 714-732 49-67 (476)
269 2w58_A DNAI, primosome compone 77.0 2.7 9.4E-05 41.7 5.7 34 715-750 55-88 (202)
270 2i1q_A DNA repair and recombin 76.6 2.4 8.1E-05 46.0 5.4 48 503-550 9-58 (322)
271 1rif_A DAR protein, DNA helica 76.6 0.9 3.1E-05 48.3 2.0 41 4-50 222-262 (282)
272 2dhr_A FTSH; AAA+ protein, hex 76.5 12 0.00039 43.2 11.3 18 715-732 65-82 (499)
273 2xvc_A ESCRT-III, SSO0910; cel 76.4 1.2 4E-05 33.8 1.8 49 270-332 10-58 (59)
274 3cf2_A TER ATPase, transitiona 76.1 4.3 0.00015 49.5 7.9 17 715-731 239-255 (806)
275 1ypw_A Transitional endoplasmi 75.9 9.6 0.00033 46.9 11.1 19 713-731 237-255 (806)
276 1kft_A UVRC, excinuclease ABC 75.9 1.9 6.4E-05 35.8 3.3 51 487-548 24-76 (78)
277 1q57_A DNA primase/helicase; d 74.9 9.2 0.00031 44.2 10.2 142 713-864 241-403 (503)
278 2qgz_A Helicase loader, putati 74.4 3 0.0001 44.8 5.5 37 714-751 152-188 (308)
279 1tf5_A Preprotein translocase 74.3 5.4 0.00018 48.4 8.0 32 461-492 724-755 (844)
280 1e9r_A Conjugal transfer prote 74.2 2.4 8.1E-05 48.2 4.8 44 713-758 52-95 (437)
281 2fsf_A Preprotein translocase 73.8 5.7 0.0002 48.1 8.0 32 461-492 764-795 (853)
282 1pzn_A RAD51, DNA repair and r 72.7 4.2 0.00014 44.6 6.1 53 487-549 35-89 (349)
283 3fmo_B ATP-dependent RNA helic 71.3 2.2 7.4E-05 45.8 3.3 44 5-51 233-278 (300)
284 4ag6_A VIRB4 ATPase, type IV s 68.9 4.3 0.00015 45.3 5.2 41 713-755 34-74 (392)
285 2p65_A Hypothetical protein PF 68.9 17 0.00058 34.8 9.2 21 714-734 43-63 (187)
286 3jvv_A Twitching mobility prot 68.6 4.3 0.00015 44.5 5.1 20 712-731 121-140 (356)
287 1z3e_B DNA-directed RNA polyme 68.0 8.5 0.00029 31.3 5.3 48 504-551 15-64 (73)
288 2w00_A HSDR, R.ECOR124I; ATP-b 67.9 4.9 0.00017 50.7 5.9 56 131-198 649-707 (1038)
289 1ex7_A Guanylate kinase; subst 67.9 3.3 0.00011 40.9 3.5 16 715-730 2-17 (186)
290 1vq8_Y 50S ribosomal protein L 67.7 1.1 3.8E-05 46.0 0.0 39 486-534 14-53 (241)
291 2bjv_A PSP operon transcriptio 67.3 3.5 0.00012 43.1 3.9 22 711-732 26-47 (265)
292 3bqs_A Uncharacterized protein 66.5 4 0.00014 35.0 3.3 39 487-535 4-43 (93)
293 1kgd_A CASK, peripheral plasma 66.5 3.4 0.00012 40.3 3.4 19 713-731 4-22 (180)
294 3cf2_A TER ATPase, transitiona 66.5 7.4 0.00025 47.4 6.9 18 714-731 511-528 (806)
295 1g5t_A COB(I)alamin adenosyltr 66.3 6.4 0.00022 38.9 5.2 38 713-752 27-64 (196)
296 3a8t_A Adenylate isopentenyltr 65.4 3.1 0.0001 45.1 2.9 19 714-732 40-58 (339)
297 3tau_A Guanylate kinase, GMP k 64.7 3.8 0.00013 41.1 3.4 20 712-731 6-25 (208)
298 1lvg_A Guanylate kinase, GMP k 64.6 3.6 0.00012 41.0 3.1 19 713-731 3-21 (198)
299 1jbk_A CLPB protein; beta barr 64.6 6.6 0.00023 38.0 5.1 20 714-733 43-62 (195)
300 3cmw_A Protein RECA, recombina 64.6 9.1 0.00031 50.5 7.6 47 706-754 370-421 (1706)
301 2eyu_A Twitching motility prot 64.5 3.2 0.00011 43.4 2.9 20 712-731 23-42 (261)
302 3llm_A ATP-dependent RNA helic 64.1 3.2 0.00011 42.5 2.7 43 5-51 174-219 (235)
303 1vma_A Cell division protein F 63.9 11 0.00036 40.5 6.8 50 714-765 104-155 (306)
304 3mab_A Uncharacterized protein 63.8 5.8 0.0002 34.0 3.7 39 487-535 4-43 (93)
305 2ewv_A Twitching motility prot 63.8 3.9 0.00013 45.3 3.5 20 712-731 134-153 (372)
306 2r8r_A Sensor protein; KDPD, P 63.5 7.2 0.00025 39.6 5.1 31 716-748 8-38 (228)
307 3hjh_A Transcription-repair-co 63.4 8 0.00027 44.3 6.1 52 713-769 13-64 (483)
308 2nrt_A Uvrabc system protein C 63.1 11 0.00036 38.0 6.1 50 487-548 168-219 (220)
309 2gza_A Type IV secretion syste 63.0 4.8 0.00016 44.4 4.1 23 708-730 169-191 (361)
310 3trf_A Shikimate kinase, SK; a 62.6 4.3 0.00015 39.6 3.3 22 714-735 5-26 (185)
311 3vaa_A Shikimate kinase, SK; s 62.6 4.3 0.00015 40.3 3.3 23 713-735 24-46 (199)
312 3b6e_A Interferon-induced heli 62.3 3.1 0.00011 41.6 2.2 29 4-34 159-187 (216)
313 3b85_A Phosphate starvation-in 62.3 7.1 0.00024 39.2 4.8 31 701-732 10-40 (208)
314 1w36_B RECB, exodeoxyribonucle 61.8 10 0.00036 48.9 7.5 56 715-770 17-82 (1180)
315 1ojl_A Transcriptional regulat 61.8 4.7 0.00016 43.2 3.6 22 712-733 23-44 (304)
316 1zp6_A Hypothetical protein AT 61.7 5.9 0.0002 38.7 4.1 19 713-731 8-26 (191)
317 3gfk_B DNA-directed RNA polyme 61.6 13 0.00046 30.6 5.4 37 504-543 22-59 (79)
318 2qmh_A HPR kinase/phosphorylas 61.5 4.1 0.00014 40.4 2.8 19 713-731 33-51 (205)
319 1qhx_A CPT, protein (chloramph 60.8 3.9 0.00013 39.6 2.6 20 714-733 3-22 (178)
320 3exa_A TRNA delta(2)-isopenten 60.6 4.3 0.00015 43.5 2.9 19 715-733 4-22 (322)
321 1rj9_A FTSY, signal recognitio 60.6 8.4 0.00029 41.2 5.3 37 713-751 101-137 (304)
322 2pt7_A CAG-ALFA; ATPase, prote 60.1 5.7 0.00019 43.2 3.9 23 707-729 164-186 (330)
323 2a1j_B DNA excision repair pro 60.0 10 0.00034 32.3 4.7 46 503-549 38-85 (91)
324 1in4_A RUVB, holliday junction 60.0 7.5 0.00026 42.2 4.9 19 715-733 52-70 (334)
325 3foz_A TRNA delta(2)-isopenten 59.9 4.5 0.00015 43.2 2.9 18 716-733 12-29 (316)
326 4dez_A POL IV 1, DNA polymeras 59.9 11 0.00036 41.5 6.1 59 487-556 178-237 (356)
327 3ney_A 55 kDa erythrocyte memb 59.8 5.4 0.00019 39.6 3.4 18 713-730 18-35 (197)
328 3tr0_A Guanylate kinase, GMP k 59.7 5.3 0.00018 39.6 3.4 19 713-731 6-24 (205)
329 2px0_A Flagellar biosynthesis 59.7 8.7 0.0003 40.9 5.2 38 713-751 104-141 (296)
330 1kag_A SKI, shikimate kinase I 59.6 5.4 0.00019 38.3 3.4 20 713-732 3-22 (173)
331 1t6n_A Probable ATP-dependent 59.6 15 0.0005 36.8 6.8 62 927-1024 82-143 (220)
332 2qor_A Guanylate kinase; phosp 59.5 5.2 0.00018 39.9 3.2 22 712-733 10-31 (204)
333 3lw7_A Adenylate kinase relate 59.2 3.9 0.00013 39.2 2.2 19 716-734 3-21 (179)
334 2ze6_A Isopentenyl transferase 58.1 5 0.00017 41.7 2.9 18 716-733 3-20 (253)
335 3cmw_A Protein RECA, recombina 58.0 13 0.00044 49.1 7.2 94 713-832 1430-1523(1706)
336 1ofh_A ATP-dependent HSL prote 57.0 9.6 0.00033 40.5 5.1 21 713-733 49-69 (310)
337 1y63_A LMAJ004144AAA protein; 57.0 5.1 0.00018 39.2 2.7 21 713-733 9-29 (184)
338 3a00_A Guanylate kinase, GMP k 56.0 6.5 0.00022 38.5 3.2 17 715-731 2-18 (186)
339 3iij_A Coilin-interacting nucl 55.8 6.9 0.00024 37.9 3.4 21 713-733 10-30 (180)
340 2j41_A Guanylate kinase; GMP, 55.8 6.8 0.00023 38.8 3.4 19 713-731 5-23 (207)
341 2z43_A DNA repair and recombin 55.7 2.4 8.3E-05 46.0 0.0 53 486-548 11-65 (324)
342 3t0q_A AGR253WP; kinesin, alph 55.6 8.2 0.00028 42.1 4.2 26 706-732 77-104 (349)
343 3b9q_A Chloroplast SRP recepto 55.5 8.2 0.00028 41.2 4.1 37 713-751 99-135 (302)
344 1lv7_A FTSH; alpha/beta domain 55.2 11 0.00039 38.8 5.2 19 714-732 45-63 (257)
345 3hws_A ATP-dependent CLP prote 54.7 6.6 0.00023 43.2 3.4 22 713-734 50-71 (363)
346 4gp7_A Metallophosphoesterase; 54.7 5 0.00017 38.8 2.1 20 713-732 8-27 (171)
347 1bg2_A Kinesin; motor protein, 54.7 8.1 0.00028 41.7 3.9 32 699-731 54-95 (325)
348 3nbx_X ATPase RAVA; AAA+ ATPas 54.6 6.6 0.00023 45.2 3.4 19 713-731 40-58 (500)
349 2y65_A Kinesin, kinesin heavy 54.5 8.1 0.00028 42.4 3.9 32 699-731 61-102 (365)
350 2ius_A DNA translocase FTSK; n 54.5 11 0.00039 43.3 5.3 28 713-740 166-193 (512)
351 1cr0_A DNA primase/helicase; R 54.4 13 0.00043 39.5 5.4 39 712-751 33-71 (296)
352 3crm_A TRNA delta(2)-isopenten 54.2 6.2 0.00021 42.5 2.9 19 715-733 6-24 (323)
353 2r44_A Uncharacterized protein 54.2 6.9 0.00024 42.3 3.4 20 713-732 45-64 (331)
354 1s96_A Guanylate kinase, GMP k 54.2 7.3 0.00025 39.4 3.3 20 712-731 14-33 (219)
355 4etp_A Kinesin-like protein KA 54.0 8.8 0.0003 42.8 4.2 25 706-731 132-158 (403)
356 1jx4_A DNA polymerase IV (fami 53.6 12 0.0004 41.0 5.1 59 487-556 178-237 (352)
357 3d3q_A TRNA delta(2)-isopenten 53.5 6.6 0.00022 42.6 3.0 18 716-733 9-26 (340)
358 3dc4_A Kinesin-like protein NO 53.4 7.7 0.00026 42.2 3.5 32 699-731 71-112 (344)
359 1x88_A Kinesin-like protein KI 53.3 8.4 0.00029 42.2 3.8 19 713-731 86-106 (359)
360 3bfn_A Kinesin-like protein KI 53.3 9.3 0.00032 42.2 4.2 32 699-731 75-116 (388)
361 1f9v_A Kinesin-like protein KA 53.3 9.1 0.00031 41.7 4.1 23 709-732 79-103 (347)
362 3b9p_A CG5977-PA, isoform A; A 53.0 7.3 0.00025 41.3 3.3 20 713-732 53-72 (297)
363 4eun_A Thermoresistant glucoki 53.0 7.9 0.00027 38.3 3.3 21 713-733 28-48 (200)
364 3lda_A DNA repair protein RAD5 52.9 13 0.00044 41.4 5.3 47 504-550 90-138 (400)
365 1u0j_A DNA replication protein 52.9 13 0.00045 38.7 5.0 44 507-550 2-46 (267)
366 3k4g_A DNA-directed RNA polyme 52.8 23 0.0008 29.7 5.5 48 504-551 18-67 (86)
367 2c95_A Adenylate kinase 1; tra 52.7 9.6 0.00033 37.3 3.9 24 711-734 6-29 (196)
368 3cf0_A Transitional endoplasmi 52.6 7.6 0.00026 41.4 3.3 21 713-733 48-68 (301)
369 1ly1_A Polynucleotide kinase; 52.5 5.9 0.0002 38.2 2.2 17 716-732 4-20 (181)
370 3kb2_A SPBC2 prophage-derived 52.4 6.6 0.00023 37.5 2.6 18 716-733 3-20 (173)
371 3i4u_A ATP-dependent RNA helic 52.3 28 0.00094 36.4 7.5 74 314-394 18-91 (270)
372 3b6u_A Kinesin-like protein KI 52.3 8.3 0.00028 42.4 3.5 32 699-731 78-119 (372)
373 2orv_A Thymidine kinase; TP4A 52.3 11 0.00037 38.3 4.1 41 713-755 18-58 (234)
374 3cm0_A Adenylate kinase; ATP-b 52.2 5.5 0.00019 38.8 2.0 22 713-734 3-24 (186)
375 1kht_A Adenylate kinase; phosp 52.2 6.5 0.00022 38.3 2.5 20 714-733 3-22 (192)
376 1v8k_A Kinesin-like protein KI 52.0 8.5 0.00029 42.8 3.6 23 709-732 149-173 (410)
377 1z6g_A Guanylate kinase; struc 51.9 8.5 0.00029 38.8 3.4 20 712-731 21-40 (218)
378 4a14_A Kinesin, kinesin-like p 51.9 9.5 0.00032 41.5 3.9 32 699-731 60-101 (344)
379 2vvg_A Kinesin-2; motor protei 51.8 8.7 0.0003 41.9 3.6 32 699-731 66-107 (350)
380 2yvu_A Probable adenylyl-sulfa 51.7 14 0.00049 35.8 5.0 36 713-750 12-47 (186)
381 1x2i_A HEF helicase/nuclease; 51.6 11 0.00036 30.5 3.3 45 503-548 20-66 (75)
382 1ry6_A Internal kinesin; kines 51.6 9.1 0.00031 41.9 3.7 19 713-731 82-102 (360)
383 3uie_A Adenylyl-sulfate kinase 51.5 7.6 0.00026 38.5 2.9 22 712-733 23-44 (200)
384 1knq_A Gluconate kinase; ALFA/ 51.5 6.1 0.00021 38.1 2.1 21 713-733 7-27 (175)
385 1goj_A Kinesin, kinesin heavy 51.4 9.7 0.00033 41.6 3.9 32 699-731 57-98 (355)
386 3gqc_A DNA repair protein REV1 51.4 16 0.00056 41.8 6.0 57 487-554 315-372 (504)
387 1t5c_A CENP-E protein, centrom 51.2 8.7 0.0003 41.9 3.5 19 713-731 75-95 (349)
388 3u4q_B ATP-dependent helicase/ 51.2 11 0.00037 48.8 4.9 39 717-755 4-43 (1166)
389 1g8p_A Magnesium-chelatase 38 51.2 6.2 0.00021 43.0 2.4 20 713-732 44-63 (350)
390 3osn_A DNA polymerase IOTA; ho 51.1 15 0.0005 41.3 5.5 58 488-556 235-293 (420)
391 2v9p_A Replication protein E1; 50.8 10 0.00035 40.4 4.0 21 712-732 124-144 (305)
392 1nlf_A Regulatory protein REPA 50.6 15 0.00052 38.4 5.3 40 712-752 28-76 (279)
393 1zu4_A FTSY; GTPase, signal re 50.2 14 0.00049 39.7 5.0 37 713-751 104-140 (320)
394 2og2_A Putative signal recogni 50.1 11 0.00037 41.3 4.1 37 713-751 156-192 (359)
395 1v5w_A DMC1, meiotic recombina 50.0 9.8 0.00033 41.5 3.7 40 711-750 119-162 (343)
396 3lre_A Kinesin-like protein KI 49.9 9.1 0.00031 41.9 3.4 19 713-731 103-123 (355)
397 3e70_C DPA, signal recognition 49.8 11 0.00039 40.7 4.1 19 713-731 128-146 (328)
398 2wbe_C Bipolar kinesin KRP-130 49.8 9.7 0.00033 41.9 3.6 32 699-731 77-118 (373)
399 3bq0_A POL IV, DBH, DNA polyme 49.7 14 0.00047 40.5 4.9 60 487-557 179-239 (354)
400 3eph_A TRNA isopentenyltransfe 49.6 8.8 0.0003 42.6 3.2 19 716-734 4-22 (409)
401 2heh_A KIF2C protein; kinesin, 49.3 9.9 0.00034 42.0 3.6 23 709-732 129-153 (387)
402 1z00_A DNA excision repair pro 49.2 19 0.00064 30.4 4.6 46 503-549 25-72 (89)
403 3uk6_A RUVB-like 2; hexameric 49.1 8.4 0.00029 42.3 3.1 20 715-734 71-90 (368)
404 1um8_A ATP-dependent CLP prote 48.8 9.3 0.00032 42.2 3.4 20 714-733 72-91 (376)
405 3cob_A Kinesin heavy chain-lik 48.7 11 0.00039 41.2 4.0 23 708-731 73-97 (369)
406 2rep_A Kinesin-like protein KI 48.5 11 0.00039 41.3 3.9 32 699-731 93-133 (376)
407 3u06_A Protein claret segregat 48.3 12 0.00042 41.6 4.2 25 706-731 130-156 (412)
408 2rhm_A Putative kinase; P-loop 47.8 6.9 0.00023 38.3 1.9 21 713-733 4-24 (193)
409 1znw_A Guanylate kinase, GMP k 47.7 11 0.00037 37.6 3.4 19 713-731 19-37 (207)
410 3c8u_A Fructokinase; YP_612366 47.6 9.1 0.00031 38.2 2.8 19 713-731 21-39 (208)
411 1c9k_A COBU, adenosylcobinamid 47.1 15 0.00051 35.8 4.1 33 717-755 2-34 (180)
412 3lnc_A Guanylate kinase, GMP k 47.1 8.1 0.00028 39.3 2.3 20 712-731 25-44 (231)
413 2v54_A DTMP kinase, thymidylat 47.0 11 0.00037 37.2 3.3 20 713-732 3-22 (204)
414 1nks_A Adenylate kinase; therm 46.8 23 0.00078 34.2 5.6 39 716-757 3-41 (194)
415 2z43_A DNA repair and recombin 46.8 11 0.00039 40.6 3.6 41 713-753 106-150 (324)
416 3t61_A Gluconokinase; PSI-biol 46.6 8.2 0.00028 38.2 2.2 20 714-733 18-37 (202)
417 2bwj_A Adenylate kinase 5; pho 46.5 9.2 0.00031 37.5 2.6 22 713-734 11-32 (199)
418 1im4_A DBH; DNA polymerase PAL 46.3 8.2 0.00028 39.1 2.2 36 487-532 184-220 (221)
419 1gvn_B Zeta; postsegregational 46.3 7.7 0.00026 41.1 2.1 18 715-732 34-51 (287)
420 4f4y_A POL IV, DNA polymerase 46.2 15 0.00052 40.3 4.5 59 487-556 179-238 (362)
421 1via_A Shikimate kinase; struc 46.0 11 0.00038 36.2 3.1 20 716-735 6-25 (175)
422 3ice_A Transcription terminati 45.8 40 0.0014 37.1 7.6 32 702-733 160-193 (422)
423 1zuh_A Shikimate kinase; alpha 45.5 10 0.00036 36.1 2.8 21 715-735 8-28 (168)
424 3asz_A Uridine kinase; cytidin 45.2 10 0.00034 37.8 2.7 19 713-731 5-23 (211)
425 4e22_A Cytidylate kinase; P-lo 45.2 11 0.00037 39.0 3.0 22 712-733 25-46 (252)
426 1cke_A CK, MSSA, protein (cyti 44.9 12 0.00042 37.5 3.4 21 714-734 5-25 (227)
427 2bdt_A BH3686; alpha-beta prot 44.5 9.3 0.00032 37.3 2.2 19 715-733 3-21 (189)
428 3fb4_A Adenylate kinase; psych 44.4 10 0.00035 37.9 2.6 19 716-734 2-20 (216)
429 1tev_A UMP-CMP kinase; ploop, 44.4 8.7 0.0003 37.5 2.0 20 714-733 3-22 (196)
430 2iyv_A Shikimate kinase, SK; t 44.4 12 0.0004 36.3 2.9 20 715-734 3-22 (184)
431 2yhs_A FTSY, cell division pro 44.3 15 0.00051 41.9 4.1 35 714-750 293-327 (503)
432 1tue_A Replication protein E1; 44.2 14 0.00049 36.8 3.4 16 716-731 60-75 (212)
433 1xjc_A MOBB protein homolog; s 44.0 24 0.00083 33.9 5.0 34 716-751 6-39 (169)
434 4fcw_A Chaperone protein CLPB; 43.9 9.1 0.00031 40.8 2.2 19 715-733 48-66 (311)
435 1ixz_A ATP-dependent metallopr 43.8 12 0.00042 38.4 3.2 18 715-732 50-67 (254)
436 1nij_A Hypothetical protein YJ 43.6 16 0.00055 39.3 4.1 15 716-730 6-20 (318)
437 1aky_A Adenylate kinase; ATP:A 43.6 14 0.00046 37.2 3.4 22 713-734 3-24 (220)
438 3dl0_A Adenylate kinase; phosp 43.5 11 0.00037 37.7 2.6 18 716-733 2-19 (216)
439 3c65_A Uvrabc system protein C 43.1 5.1 0.00017 40.5 0.0 51 486-548 172-224 (226)
440 2pez_A Bifunctional 3'-phospho 43.0 9.9 0.00034 36.7 2.2 21 713-733 4-24 (179)
441 2v3c_C SRP54, signal recogniti 43.0 17 0.0006 40.8 4.4 35 715-751 100-134 (432)
442 2c9o_A RUVB-like 1; hexameric 42.9 12 0.00042 42.5 3.2 21 714-734 63-83 (456)
443 2r62_A Cell division protease 42.7 7.6 0.00026 40.4 1.3 20 714-733 44-63 (268)
444 2qt1_A Nicotinamide riboside k 42.5 12 0.00041 37.1 2.7 19 713-731 20-38 (207)
445 2cdn_A Adenylate kinase; phosp 42.4 12 0.00041 36.9 2.7 21 714-734 20-40 (201)
446 3lda_A DNA repair protein RAD5 42.4 14 0.00047 41.2 3.4 40 713-752 177-220 (400)
447 2iut_A DNA translocase FTSK; n 42.3 23 0.00078 41.2 5.3 29 713-741 213-241 (574)
448 1e6c_A Shikimate kinase; phosp 42.2 13 0.00043 35.5 2.8 20 715-734 3-22 (173)
449 2ffh_A Protein (FFH); SRP54, s 42.2 32 0.0011 38.5 6.4 48 715-764 99-148 (425)
450 3nwj_A ATSK2; P loop, shikimat 42.0 15 0.0005 38.0 3.3 21 714-734 48-68 (250)
451 3tif_A Uncharacterized ABC tra 42.0 12 0.00042 38.2 2.7 18 712-729 29-46 (235)
452 1zd8_A GTP:AMP phosphotransfer 41.9 14 0.00046 37.4 3.1 20 713-732 6-25 (227)
453 1sq5_A Pantothenate kinase; P- 41.6 31 0.0011 36.7 6.0 20 713-732 79-98 (308)
454 1f2t_A RAD50 ABC-ATPase; DNA d 41.4 15 0.00052 34.4 3.1 17 715-731 24-40 (149)
455 1nn5_A Similar to deoxythymidy 41.3 12 0.00041 37.2 2.6 22 713-734 8-29 (215)
456 1ye8_A Protein THEP1, hypothet 41.2 15 0.00051 35.7 3.1 16 716-731 2-17 (178)
457 1zak_A Adenylate kinase; ATP:A 40.8 17 0.0006 36.4 3.7 21 714-734 5-25 (222)
458 3kta_A Chromosome segregation 40.4 15 0.0005 35.5 2.9 17 716-732 28-44 (182)
459 2i1q_A DNA repair and recombin 40.4 16 0.00053 39.3 3.4 25 713-737 97-121 (322)
460 3nwn_A Kinesin-like protein KI 40.3 18 0.0006 39.6 3.8 23 708-731 98-122 (359)
461 2aq4_A DNA repair protein REV1 40.3 28 0.00096 39.2 5.6 57 487-554 241-301 (434)
462 4a74_A DNA repair and recombin 40.2 13 0.00045 37.3 2.7 21 713-733 24-44 (231)
463 3qf7_A RAD50; ABC-ATPase, ATPa 39.9 17 0.00057 40.0 3.6 20 716-735 25-44 (365)
464 1qf9_A UMP/CMP kinase, protein 39.8 14 0.00049 35.8 2.8 19 716-734 8-26 (194)
465 2bbw_A Adenylate kinase 4, AK4 39.4 17 0.00058 37.3 3.4 21 713-733 26-46 (246)
466 2x8a_A Nuclear valosin-contain 39.3 19 0.00066 37.7 3.8 17 715-731 45-61 (274)
467 2h09_A Transcriptional regulat 39.2 80 0.0027 29.3 7.9 36 314-350 69-104 (155)
468 2i3b_A HCR-ntpase, human cance 39.2 17 0.0006 35.6 3.2 20 714-733 1-20 (189)
469 1iy2_A ATP-dependent metallopr 39.2 16 0.00056 38.2 3.3 18 715-732 74-91 (278)
470 1r7j_A Conserved hypothetical 39.1 28 0.00097 29.7 4.2 32 314-347 35-66 (95)
471 1ls1_A Signal recognition part 39.0 27 0.00093 37.0 5.0 36 714-751 98-133 (295)
472 1rz3_A Hypothetical protein rb 39.0 28 0.00094 34.3 4.8 18 715-732 23-40 (201)
473 1ukz_A Uridylate kinase; trans 38.9 13 0.00044 36.7 2.3 17 715-731 16-32 (203)
474 2r2a_A Uncharacterized protein 38.8 18 0.00061 35.9 3.3 45 819-864 88-132 (199)
475 2vli_A Antibiotic resistance p 38.7 13 0.00045 35.8 2.3 20 714-733 5-24 (183)
476 2pt5_A Shikimate kinase, SK; a 38.7 15 0.0005 34.9 2.6 18 716-733 2-19 (168)
477 2f1r_A Molybdopterin-guanine d 38.6 11 0.00037 36.5 1.6 18 716-733 4-21 (171)
478 1g41_A Heat shock protein HSLU 38.5 14 0.00048 41.6 2.7 20 714-733 50-69 (444)
479 3pxg_A Negative regulator of g 38.4 27 0.00091 39.8 5.1 23 713-735 200-222 (468)
480 2wwf_A Thymidilate kinase, put 38.4 16 0.00055 36.2 2.9 22 713-734 9-30 (212)
481 3a4m_A L-seryl-tRNA(SEC) kinas 38.3 13 0.00043 38.7 2.2 20 714-733 4-23 (260)
482 2cbz_A Multidrug resistance-as 38.2 15 0.00052 37.6 2.7 18 712-729 29-46 (237)
483 1ak2_A Adenylate kinase isoenz 38.2 22 0.00074 36.1 3.9 23 713-735 15-37 (233)
484 2p5t_B PEZT; postsegregational 38.1 10 0.00035 39.2 1.4 19 715-733 33-51 (253)
485 3l0o_A Transcription terminati 38.0 87 0.003 34.5 8.7 31 701-731 160-192 (427)
486 2h58_A Kinesin-like protein KI 38.0 21 0.00074 38.4 4.0 25 706-731 72-98 (330)
487 2plr_A DTMP kinase, probable t 37.9 16 0.00055 36.1 2.8 21 714-734 4-24 (213)
488 4akg_A Glutathione S-transfera 37.7 16 0.00054 50.7 3.5 26 706-731 1259-1284(2695)
489 1m7g_A Adenylylsulfate kinase; 37.6 14 0.00047 36.9 2.3 33 699-733 12-44 (211)
490 2jaq_A Deoxyguanosine kinase; 37.4 17 0.00058 35.7 2.9 18 716-733 2-19 (205)
491 1jjv_A Dephospho-COA kinase; P 37.2 16 0.00053 36.2 2.6 17 716-732 4-20 (206)
492 1e4v_A Adenylate kinase; trans 36.9 17 0.00057 36.3 2.8 19 716-734 2-20 (214)
493 2zan_A Vacuolar protein sortin 36.9 17 0.0006 41.1 3.2 19 714-732 167-185 (444)
494 3tlx_A Adenylate kinase 2; str 36.9 21 0.00071 36.6 3.6 22 713-734 28-49 (243)
495 1sgw_A Putative ABC transporte 36.8 16 0.00056 36.6 2.7 18 712-729 33-50 (214)
496 3gbj_A KIF13B protein; kinesin 36.6 22 0.00074 38.8 3.8 23 708-731 86-110 (354)
497 2nr8_A Kinesin-like protein KI 36.6 22 0.00075 38.8 3.8 22 709-731 98-121 (358)
498 3nh6_A ATP-binding cassette SU 36.5 16 0.00053 39.1 2.5 19 712-730 78-96 (306)
499 2if2_A Dephospho-COA kinase; a 36.4 17 0.00059 35.8 2.8 17 716-732 3-19 (204)
500 1uf9_A TT1252 protein; P-loop, 36.3 17 0.00058 35.6 2.7 18 715-732 9-26 (203)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1e-152 Score=1498.82 Aligned_cols=971 Identities=41% Similarity=0.732 Sum_probs=890.7
Q ss_pred ccccccccEEEEeeeecccCCCCchHHHHHHhhhhcc----ccceeecccchhh----hhhH----------HHhhcccc
Q psy13788 2 VALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI----GQEVFKGVKSLNR----IQSL----------VYDTAYHT 63 (1034)
Q Consensus 2 ~~~~~~v~~vViDEvH~l~d~RG~~le~li~~~~~~~----~~~~~~~~~~~~~----~~~~----------~~~~~~~~ 63 (1034)
..++++|++|||||+|||+|+||++||.+++|+++.. ...|+||+||+-+ +... .++..|||
T Consensus 202 ~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RP 281 (1724)
T 4f92_B 202 RTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRP 281 (1724)
T ss_dssp HHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCS
T ss_pred chhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCcc
Confidence 3578899999999999999999999999999987654 3478999988532 1110 23445553
Q ss_pred -----------------------------------CCceEEe--ccCCcchhHHHHHHHHHHHHH---Hhhcc-------
Q psy13788 64 -----------------------------------NENLLIC--APTGAGKTNVAMLTIAHQIKQ---HISQG------- 96 (1034)
Q Consensus 64 -----------------------------------~~~~~v~--~~~~~~k~~~~~~~~~~~~~~---~~~~~------- 96 (1034)
+.+++|| +|++|++.+..+.+.+.+... .....
T Consensus 282 vpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1724)
T 4f92_B 282 VPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVL 361 (1724)
T ss_dssp SCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHH
T ss_pred CccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHH
Confidence 2235554 567777766555443322100 00000
Q ss_pred ---------ccce-eccccc-eecchhH-----HHHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCcee
Q psy13788 97 ---------TEMY-NAKHGC-YVHIGIL-----DVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEM 159 (1034)
Q Consensus 97 ---------~~~~-~~~~g~-~~h~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~ 159 (1034)
..+. -...|+ +||+|+. .+++.|.++ .+.+.++|.+++ +|||||| +|||+||++
T Consensus 362 ~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G--------~i~vlvaTsTLa-~GVNlPa~~vVI~~~~~ 432 (1724)
T 4f92_B 362 RTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADK--------HIQVLVSTATLA-WGVNLPAHTVIIKGTQV 432 (1724)
T ss_dssp HHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTT--------CCCEEEECHHHH-HHSCCCBSEEEEECCEE
T ss_pred HhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCC--------CCeEEEEcchhH-hhCCCCCceEEEeCCEE
Confidence 0000 024788 8899987 244444333 556666677777 3899999 999999999
Q ss_pred ecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHhcCCcceecccccchHHHHhhhhhcccccch
Q psy13788 160 YNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAEVALGTIGNI 239 (1034)
Q Consensus 160 ~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~~~~~i~s~l~~~~~~~ln~e~~~~~~~~~ 239 (1034)
|||..|++.++++.+|+||+|||||||+|+.|++|++|+.+++.+|..+++++.||||+|..++.|+||+||
T Consensus 433 ~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI-------- 504 (1724)
T 4f92_B 433 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEI-------- 504 (1724)
T ss_dssp EETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHH--------
T ss_pred ecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHHHHHHHH
Q psy13788 240 DEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENA 319 (1034)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1034)
++|++++.+|+++|+++||+|+||++||.+||++.++...|+.+++.+.++|.++
T Consensus 505 -------------------------~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~ 559 (1724)
T 4f92_B 505 -------------------------VLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA 559 (1724)
T ss_dssp -------------------------HHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHH
T ss_pred -------------------------HHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888777888899999999999
Q ss_pred HHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhhhHHHHHH
Q psy13788 320 AQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNL 399 (1034)
Q Consensus 320 l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l 399 (1034)
+..|.++|||++|++++.+.+|++||+||+|||+|.|+..|.+.+++.+++.++|+++|.+.||+++++|.+|+.++.++
T Consensus 560 ~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l 639 (1724)
T 4f92_B 560 ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKL 639 (1724)
T ss_dssp HHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHH
T ss_pred HHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCCCCCcchhHHHHHHHHHhCCCCCCcChHhhHHHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q psy13788 400 TQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFE 479 (1034)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~Kv~~LLqa~i~~~~~~~~~l~gd~~~i~~~a~rll~al~ei~~~~~~~~~~~~~l~L~k~l~ 479 (1034)
.+. +++++++..+++..|+++|||+||++.+++++++.+|+.+|.++|.||++|+++||..+||+..+..++.|+||++
T Consensus 640 ~~~-~~~~~~~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~ 718 (1724)
T 4f92_B 640 LER-VPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMID 718 (1724)
T ss_dssp HHH-SSSCCCSCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred Hhc-CCCCcCCCCCChHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 987 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCcccccccccccCCCCCCCCHHHHHHHHhcCCCHHHHhcCCHHHHHhhhcCchhHHHHHHHhhcCCcceEEEE
Q psy13788 480 TKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESK 559 (1034)
Q Consensus 480 ~~~w~~~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~t~~~l~~~~~~el~~~l~~~~~g~~i~~~~~~~P~l~~~~~ 559 (1034)
+|+|++.+||+|| |++++.++++|+++|+|+++|.++++.||+.++++|++|+.+++++++||+++++++
T Consensus 719 ~~~w~~~~~L~q~----------~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~ 788 (1724)
T 4f92_B 719 KRMWQSMCPLRQF----------RKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVH 788 (1724)
T ss_dssp HTSCTTSCGGGGS----------TTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEE
T ss_pred hCCCCCCCceecC----------CCCCHHHHHHHHhcCCCHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEE
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccceEEEEEEEEeCCCCCccCCCCCCCcEEEEEEcCCCCeeEEEeeEEeecccccccCceeEEEEeecCCCCCCce
Q psy13788 560 LLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQY 639 (1034)
Q Consensus 560 ~~pit~~~l~v~l~~~~~~~~~~~~~~~~~e~~~l~v~D~~~~~i~~~~~~~l~~~~~~~~~~~~l~f~vpl~~p~p~~~ 639 (1034)
+||+|+++++|+++++|+|.|++++||+ .|+||+||+|++++.|+|+++|.++++.. ++++.++|++|+.+|+||+|
T Consensus 789 ~~p~~~~~~~~~~~~~~~~~w~~~~h~~-~~~~~~~v~d~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~p~~~ 865 (1724)
T 4f92_B 789 LQPITRSTLKVELTITPDFQWDEKVHGS-SEAFWILVEDVDSEVILHHEYFLLKAKYA--QDEHLITFFVPVFEPLPPQY 865 (1724)
T ss_dssp EEESSSSEEEEEEEEEECSCCCTTTTTT-EEEEEEEEECTTSCBEEEEEEEEEEGGGT--TSCEEEEEEEECCSSCCSEE
T ss_pred EEecCCceEEEEEEEeeccccchhhcCC-ceeEEEEEEecCCCeEEEEEEEEeeeecc--CCceEEEEEEECCCCCCCeE
Confidence 9999999999999999999999999998 99999999999999999999999999876 56899999999999999999
Q ss_pred EEEeeccccccccccccccccccccCCCCCCCCccccCCCCCCCccCcccccccc--ccCCCChhHHHHHHHHhcCCCcE
Q psy13788 640 LIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLY--KFSHFNPIQTQIFHCLYHTDNNV 717 (1034)
Q Consensus 640 ~i~~~Sd~wlg~e~~~~vs~~~l~~p~~~~~~~~ll~l~~~~~~~l~~~~~~~~~--~~~~~~~~Q~~ai~~l~~~~~~v 717 (1034)
+++++||+|+|++...+++|.++++|+..+++|+++|++|+|+++|.++.++.+| +|++|+|+|+++|+.++++++|+
T Consensus 866 ~i~~~sd~w~~~~~~~~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nv 945 (1724)
T 4f92_B 866 FIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNV 945 (1724)
T ss_dssp EEEEEESSSTTCEEEEEEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCE
T ss_pred EEEEEEccccCCCceeeeccccccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcE
Confidence 9999999999999999999999999999999999999999999999999999998 49999999999999999889999
Q ss_pred EEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcEEE
Q psy13788 718 LLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIV 797 (1034)
Q Consensus 718 ll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV 797 (1034)
+++||||||||++|++|+++.+.+.++.++||++|++||+.|++++|.+.|++.+|++++.++|+...+.+...+++|+|
T Consensus 946 lv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV 1025 (1724)
T 4f92_B 946 FVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIII 1025 (1724)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEE
T ss_pred EEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEE
Confidence 99999999999999999999999888899999999999999999999999998889999999999887766667899999
Q ss_pred ECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcc
Q psy13788 798 TTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNI 877 (1034)
Q Consensus 798 ~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~ 877 (1034)
+|||+|+.++++|.....+++++++|+||+|++++.+|+.++.++.+++++..+.+.++|+|+||||++|++++++|++.
T Consensus 1026 ~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~ 1105 (1724)
T 4f92_B 1026 STPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGC 1105 (1724)
T ss_dssp ECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTC
T ss_pred ECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCC
Confidence 99999999999888888899999999999999998899999999999999988889999999999999999999999999
Q ss_pred cCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCC
Q psy13788 878 TKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNP 957 (1034)
Q Consensus 878 ~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~ 957 (1034)
....+++|.++.||++++.++.+++..+...+...+.++++..+.....++++||||+|+++|+.+|..|...+.....+
T Consensus 1106 ~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~ 1185 (1724)
T 4f92_B 1106 SATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQR 1185 (1724)
T ss_dssp CSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccch
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999888888
Q ss_pred CcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 958 KMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 958 ~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
..++....+++...++.+.|+.|..++..||++|||||++++|+.+|+ + |++|.++|||||+++++|| |+.
T Consensus 1186 ~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~--l--F~~G~i~VLvaT~tlA~GV-nlP 1256 (1724)
T 4f92_B 1186 QRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQ--L--FSSGAIQVVVASRSLCWGM-NVA 1256 (1724)
T ss_dssp TTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHH--H--HHHTSBCEEEEEGGGSSSC-CCC
T ss_pred hhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHH--H--HHCCCCeEEEEChHHHcCC-CCC
Confidence 888999999999999999999999999999999999999999999999 9 9999999999999999999 873
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.3e-76 Score=770.85 Aligned_cols=592 Identities=24% Similarity=0.367 Sum_probs=491.8
Q ss_pred cccccccEEEEeeeecccCCCCchHHHHHHhhhhcc----ccceeecccchhh-hhhH--H----------Hhhcccc--
Q psy13788 3 ALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI----GQEVFKGVKSLNR-IQSL--V----------YDTAYHT-- 63 (1034)
Q Consensus 3 ~~~~~v~~vViDEvH~l~d~RG~~le~li~~~~~~~----~~~~~~~~~~~~~-~~~~--~----------~~~~~~~-- 63 (1034)
.++++|++|||||+|+|+|+||++||.+++|+++.. .+.|++|+|++-+ ...+ + +...+||
T Consensus 1042 ~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvp 1121 (1724)
T 4f92_B 1042 KNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVP 1121 (1724)
T ss_dssp HHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSC
T ss_pred cccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCC
Confidence 357899999999999999999999999999976433 3478999987422 1111 0 1222332
Q ss_pred ---------------------------------CCceEEeccC--CcchhHHHHHHHHHH--------------HHHHhh
Q psy13788 64 ---------------------------------NENLLICAPT--GAGKTNVAMLTIAHQ--------------IKQHIS 94 (1034)
Q Consensus 64 ---------------------------------~~~~~v~~~~--~~~k~~~~~~~~~~~--------------~~~~~~ 94 (1034)
+.+++||+++ .+...+..+...... ....+.
T Consensus 1122 L~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~ 1201 (1724)
T 4f92_B 1122 LELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLE 1201 (1724)
T ss_dssp EEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHT
T ss_pred eEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHh
Confidence 3346676654 222222222111110 001111
Q ss_pred ccc--cc-eeccccc-eecchhH-----HHHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCC
Q psy13788 95 QGT--EM-YNAKHGC-YVHIGIL-----DVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKH 164 (1034)
Q Consensus 95 ~~~--~~-~~~~~g~-~~h~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~ 164 (1034)
+.. .+ .....|| |||+|+. .+++.|..+ .+...++|.+++ +|||+|| +|||+||++||++.
T Consensus 1202 ~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G--------~i~VLvaT~tlA-~GVnlPa~~VVI~~~~~~dg~~ 1272 (1724)
T 4f92_B 1202 KLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSG--------AIQVVVASRSLC-WGMNVAAHLVIIMDTQYYNGKI 1272 (1724)
T ss_dssp TCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHT--------SBCEEEEEGGGS-SSCCCCBSEEEEECSEEEETTT
T ss_pred hcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCC--------CCeEEEEChHHH-cCCCCCccEEEEecCccccCcc
Confidence 100 00 0124788 8888887 234445433 456666666666 4899999 89999999999988
Q ss_pred CeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHhcCCcceecccccchHHHHhhhhhcccccchhhHHH
Q psy13788 165 GCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVR 244 (1034)
Q Consensus 165 ~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~~~~~i~s~l~~~~~~~ln~e~~~~~~~~~~~~~~ 244 (1034)
.++.++++.+|.||+|||||||+|+.|+++++|++.+++.|.+++++++||||+|...+.+++|+||
T Consensus 1273 ~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI------------- 1339 (1724)
T 4f92_B 1273 HAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI------------- 1339 (1724)
T ss_dssp TEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHH-------------
T ss_pred cccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHH-------------
Confidence 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHhh
Q psy13788 245 WLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILD 324 (1034)
Q Consensus 245 ~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 324 (1034)
++|++.+.+|+++|+++||+|+|+.+||.+||++... ..++.+++.++++++++.|+
T Consensus 1340 --------------------~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~---~~~~~~~l~~lv~~~l~~L~ 1396 (1724)
T 4f92_B 1340 --------------------VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGIS---HRHLSDHLSELVEQTLSDLE 1396 (1724)
T ss_dssp --------------------HTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCS---HHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------HhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccc---hhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997643 45778899999999999999
Q ss_pred hcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhhhHHHHHHhhhcc
Q psy13788 325 KAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECC 404 (1034)
Q Consensus 325 ~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l~~~~~ 404 (1034)
++|||..++ ++.+.||++|++||+|||+|.|+..|.+.+++..+..++|+++|.++||+++++|++|...+.++.+. .
T Consensus 1397 ~~~~I~~~~-~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~~-~ 1474 (1724)
T 4f92_B 1397 QSKCISIED-EMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQK-V 1474 (1724)
T ss_dssp HTTSEEEET-TTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHHH-S
T ss_pred HCCCEEEcC-CCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCcccccccccccHHHHHHHHHhh-C
Confidence 999999874 67899999999999999999999999999999999999999999999999999999999999999876 5
Q ss_pred ccCCCC-CCCCcchhHHHHHHHHHhCCCCCCcChHhhHHHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccC
Q psy13788 405 EIPIRG-GSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQW 483 (1034)
Q Consensus 405 ~~~~~~-~~~~~~~Kv~~LLqa~i~~~~~~~~~l~gd~~~i~~~a~rll~al~ei~~~~~~~~~~~~~l~L~k~l~~~~w 483 (1034)
+++... ..++++.|+++|||+|++|++++ ..+.+|++.+++++.|+++|++++|..+||...+..+++|+|||.||+|
T Consensus 1475 ~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~-~~~~~D~~~i~~~~~rl~~a~~d~~~~~g~~~~~~~~~~l~q~l~~~~w 1553 (1724)
T 4f92_B 1475 PHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMW 1553 (1724)
T ss_dssp SSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCccccCCHHHHHHHHHHHHHCCCcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhCCC
Confidence 555433 45678999999999999999997 5678999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhcCCcceEEEEEE
Q psy13788 484 PHETPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWEIPLLEIESKLL 561 (1034)
Q Consensus 484 ~~~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~~P~l~~~~~~~ 561 (1034)
++++||+|+ |++++.++++|+++|+ |+.||++++++++..++. ++++++++.++++++|++++++.+.
T Consensus 1554 ~~~~~L~qi----------p~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~i~~~~~~~ 1623 (1724)
T 4f92_B 1554 SKDSYLKQL----------PHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVV 1623 (1724)
T ss_dssp TTSCGGGGS----------TTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHHSCCEEEEEEEE
T ss_pred cCCcCEecC----------CCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHHhCCceEEEEEEe
Confidence 999999999 9999999999999999 999999999999999996 8999999999999999999999987
Q ss_pred eec----cceEEEEEEEEeCC-----CCCccCCCCCCCcEEEEEEcCCCCeeEEEeeEEeecccccccCceeEEEEeecC
Q psy13788 562 PIT----RTVLKIHLTIKANF-----SWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLS 632 (1034)
Q Consensus 562 pit----~~~l~v~l~~~~~~-----~~~~~~~~~~~e~~~l~v~D~~~~~i~~~~~~~l~~~~~~~~~~~~l~f~vpl~ 632 (1034)
+.. ...+.++|+++.+. .|.++||..+.|+||++|+|.+++.++...++.+++. ....++|++|-
T Consensus 1624 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~k~e~w~~vvg~~~~~~l~~~kr~~~~~~-----~~~~l~f~~p~- 1697 (1724)
T 4f92_B 1624 DKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK-----AKVKLDFVAPA- 1697 (1724)
T ss_dssp TSSSCCTTSEEEEEEEEEESSCCCSCCCCTTSCSCCCCCEEEEEEETTTTEEEEEEEECCSSE-----EEEEEEEECCS-
T ss_pred cCccccCCCeEEEEEEEEecCCCCCeeecCCCCCCCccCEEEEEEECCCCeEEEEEEEecCCC-----ceEEEEEEeCC-
Confidence 543 24566666665443 3667888878999999999999999999887776543 24678888883
Q ss_pred CCCCCceEEEeeccccccccccccccc
Q psy13788 633 DPLPNQYLIRAMSDRYLGSVVQHSMSF 659 (1034)
Q Consensus 633 ~p~p~~~~i~~~Sd~wlg~e~~~~vs~ 659 (1034)
+.+..+.++++||+|+|++.+..+.+
T Consensus 1698 -~g~~~~~~~~~~d~y~g~d~~~~~~~ 1723 (1724)
T 4f92_B 1698 -TGAHNYTLYFMSDAYMGCDQEYKFSV 1723 (1724)
T ss_dssp -SSCEEEEEEEEESSCSSCCEEEEEEE
T ss_pred -CCceeEEEEEEecCccccceeEEEec
Confidence 44567999999999999998876543
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.3e-53 Score=525.41 Aligned_cols=465 Identities=18% Similarity=0.252 Sum_probs=362.4
Q ss_pred cccccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh-hhhHH--H-----hhcc------------
Q psy13788 3 ALTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR-IQSLV--Y-----DTAY------------ 61 (1034)
Q Consensus 3 ~~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~-~~~~~--~-----~~~~------------ 61 (1034)
.+++++++|||||+|++++ +||+.+|.++.++.+.....+++++|++.+ ...+. + ...+
T Consensus 134 ~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~ 213 (702)
T 2p6r_A 134 SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEGVLCE 213 (702)
T ss_dssp SGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTCEEEECCCCSSCEEEEEECS
T ss_pred hHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhCCCcccCCCCCccceEEEeeC
Confidence 4678999999999999999 999999999999776666789999988633 11110 0 0011
Q ss_pred --------------------------ccCCceEEeccCCcchhHHHHHHHHHHHHHHhhc-------------c-c----
Q psy13788 62 --------------------------HTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQ-------------G-T---- 97 (1034)
Q Consensus 62 --------------------------~~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~-------------~-~---- 97 (1034)
.++.+++||+++. ..+...+..+.+...+ . .
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~-----~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~ 288 (702)
T 2p6r_A 214 GTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTR-----RGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMS 288 (702)
T ss_dssp SEEEEEETTEEEEEECCHHHHHHHHHHTTCCEEEECSSH-----HHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHH
T ss_pred CeeeccCcchhhhhhhhHHHHHHHHHhcCCCEEEEcCCH-----HHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccccc
Confidence 1234577777651 1111222222222111 0 0
Q ss_pred -cce-eccccc-eecchhHH-----HHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeee
Q psy13788 98 -EMY-NAKHGC-YVHIGILD-----VLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYV 168 (1034)
Q Consensus 98 -~~~-~~~~g~-~~h~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~ 168 (1034)
.+. ....|+ ++|+|+.. +++.|..+ .+...++|.+++ .|||+|+ +|||.++++||+ .+.
T Consensus 289 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g--------~~~vlvaT~~l~-~Gidip~~~~VI~~~~~yd~---~~~ 356 (702)
T 2p6r_A 289 RKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG--------NIKVVVATPTLA-AGVNLPARRVIVRSLYRFDG---YSK 356 (702)
T ss_dssp HHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT--------SCCEEEECSTTT-SSSCCCBSEEEECCSEEESS---SEE
T ss_pred HHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC--------CCeEEEECcHHh-ccCCCCceEEEEcCceeeCC---CCC
Confidence 000 012466 67887762 33444332 334455555555 3899998 999999999982 258
Q ss_pred ecChhhHHHHhhccCCCCccccceEEEECCcccHHHHH-HHh-cCCcceeccccc--chHHHHhhhhhcccccchhhHHH
Q psy13788 169 HIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL-SLL-TNQIPIESNFVA--NLADNLNAEVALGTIGNIDEAVR 244 (1034)
Q Consensus 169 ~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~-~~~-~~~~~i~s~l~~--~~~~~ln~e~~~~~~~~~~~~~~ 244 (1034)
++++.+|.||+|||||+|+|+.|++++++..++.+.+. +++ +.++|++|+|.. .+.+++++++
T Consensus 357 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~------------- 423 (702)
T 2p6r_A 357 RIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSII------------- 423 (702)
T ss_dssp ECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHH-------------
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHH-------------
Confidence 99999999999999999999999999999987765544 344 678999999987 5777777777
Q ss_pred HHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHhh
Q psy13788 245 WLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILD 324 (1034)
Q Consensus 245 ~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 324 (1034)
+.|++.+.+|+.+|+.+||+|.++. .| ..+.++++++.|.
T Consensus 424 --------------------~~g~~~~~~~~~~~l~~t~~~~~~~-~~-------------------~~~~~~~al~~L~ 463 (702)
T 2p6r_A 424 --------------------CDGYAKTLEELEDFFADTFFFKQNE-IS-------------------LSYELERVVRQLE 463 (702)
T ss_dssp --------------------HHTSCSSHHHHHHHHHTSTTHHHHC-CC-------------------CHHHHHHHHHHHH
T ss_pred --------------------HcCCCCCHHHHHHHHHhhhHHHhhh-HH-------------------HHHHHHHHHHHHH
Confidence 9999999999999999999998654 11 2367889999999
Q ss_pred hcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCC-CCHHHHHHhhccccccccCcCChhhhHHHHHHhhh-
Q psy13788 325 KAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKV-LDDVGILSMISQAHEFEQLKVRDEELHELDNLTQE- 402 (1034)
Q Consensus 325 ~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~-~~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l~~~- 402 (1034)
+.|+|..+ +.+.+|++|+++|+||++|.++..|...++.. .+..++|+++|.+.||+++++|++| .++.++...
T Consensus 464 ~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~ 539 (702)
T 2p6r_A 464 NWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRL 539 (702)
T ss_dssp HTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHH
T ss_pred HCcCeeEC---CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch-HHHHHHHHhc
Confidence 99999875 67999999999999999999999999999886 7888999999999999999999999 666665532
Q ss_pred cccc-CCCCCCCC-------cchhHHHHHHHHHhCCCCC----CcCh-HhhHHHHHHhHHHHHHHHHHHHHhcccHHHHH
Q psy13788 403 CCEI-PIRGGSEN-------VHGKVNILLQTLLSRGRVN----SFSL-VSDLEYVNQNVIRIIRALFEITLHRNNAIMAA 469 (1034)
Q Consensus 403 ~~~~-~~~~~~~~-------~~~Kv~~LLqa~i~~~~~~----~~~l-~gd~~~i~~~a~rll~al~ei~~~~~~~~~~~ 469 (1034)
..++ ++.. .++ ++.|+++|||+|+++.+++ +|++ .||+++++++|.|+++|+.+||..+||.
T Consensus 540 ~~~~~~~~~-~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~~---- 614 (702)
T 2p6r_A 540 RKELSYYPS-DFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNT---- 614 (702)
T ss_dssp GGGSSCCCC-TTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC----
T ss_pred cccccCCcc-hhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcCHH----
Confidence 2222 1111 122 7789999999999999976 4787 5999999999999999999999999997
Q ss_pred HHHHHHHHHHhccCCCCCcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCchhHHHHHHHh
Q psy13788 470 RFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVGDKVKQCA 548 (1034)
Q Consensus 470 ~~l~L~k~l~~~~w~~~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~~~g~~i~~~~ 548 (1034)
.+.+|++||.||+|++.+||+|+ |++++.++|+|+++|+ |+.+|++++ +++..+++ +++|+++++.+
T Consensus 615 ~l~~l~~ri~~gv~~~~~~L~ql----------p~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll~-~~~~~~i~~~~ 682 (702)
T 2p6r_A 615 SVSGLTERIKHGVKEELLELVRI----------RHIGRVRARKLYNAGIRNAEDIVRHR-EKVASLIG-RGIAERVVEGI 682 (702)
T ss_dssp SSTTHHHHHHHTCCGGGHHHHTS----------TTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHHC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcchHhhhcC----------CCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHHhC-hhHHHHHHHhc
Confidence 77789999999999999999999 9999999999999999 999999999 99999998 99999999999
Q ss_pred hcCCcceEEEE
Q psy13788 549 WEIPLLEIESK 559 (1034)
Q Consensus 549 ~~~P~l~~~~~ 559 (1034)
+ +|++++++.
T Consensus 683 ~-~p~~~~~~~ 692 (702)
T 2p6r_A 683 S-VKSLNPESA 692 (702)
T ss_dssp H-HHC------
T ss_pred C-CCccCcchh
Confidence 9 999998753
No 4
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2e-52 Score=520.24 Aligned_cols=465 Identities=16% Similarity=0.241 Sum_probs=352.7
Q ss_pred cccccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh-hhhH--HHh-----hcc------------
Q psy13788 3 ALTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR-IQSL--VYD-----TAY------------ 61 (1034)
Q Consensus 3 ~~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~-~~~~--~~~-----~~~------------ 61 (1034)
.+++++++|||||+|+++| +||+++|.++.++. ..+++++|++.. ...+ ++. ..+
T Consensus 141 ~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~----~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~ 216 (715)
T 2va8_A 141 EWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK----RRNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYP 216 (715)
T ss_dssp GGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH----TSEEEEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEE
T ss_pred hHhhccCEEEEechhhcCCcccchHHHHHHHhcc----cCcEEEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEec
Confidence 4688999999999999999 99999999999954 667888887532 1111 000 011
Q ss_pred ---------------------------------ccCCceEEeccCCcchhHHHHHHHHHHHHHHhhc-------------
Q psy13788 62 ---------------------------------HTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQ------------- 95 (1034)
Q Consensus 62 ---------------------------------~~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~------------- 95 (1034)
.++.+++||+++. ..+...+..+.+....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~-----~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 291 (715)
T 2va8_A 217 ERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSR-----KMAESTALKIANYMNFVSLDENALSEILK 291 (715)
T ss_dssp CSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCCEEEECSSH-----HHHHHHHHHHHHTTTSSCCCHHHHHHHHH
T ss_pred CCcccceeeecCcchhhhcccchHHHHHHHHHHhcCCCEEEEECCH-----HHHHHHHHHHHHHHhhccCChHHHHHHHH
Confidence 1234567776651 1111222222221110
Q ss_pred ---cc---------cce-eccccc-eecchhHH-----HHHHhhhcCCCccccccccccccchhhhccCcccce-EEEec
Q psy13788 96 ---GT---------EMY-NAKHGC-YVHIGILD-----VLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTK 155 (1034)
Q Consensus 96 ---~~---------~~~-~~~~g~-~~h~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~ 155 (1034)
.. .+. ....|+ +||+|+.. +++.|..+ .+...++|.+++ .|||+|+ +|||.
T Consensus 292 ~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g--------~~~vlvaT~~l~-~Gidip~~~~VI~ 362 (715)
T 2va8_A 292 QLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQR--------KIKVIVATPTLA-AGVNLPARTVIIG 362 (715)
T ss_dssp HHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT--------CSCEEEECGGGG-GSSCCCBSEEEEC
T ss_pred HHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcC--------CCeEEEEChHHh-cccCCCceEEEEe
Confidence 00 000 012467 67887762 33444332 334555555555 3899998 99999
Q ss_pred CceeecCCCC-eeeecChhhHHHHhhccCCCCccccceEEEECCccc-HH-HHHHHh-cCCcceeccccc--chHHHHhh
Q psy13788 156 GTEMYNAKHG-CYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEK-LN-HYLSLL-TNQIPIESNFVA--NLADNLNA 229 (1034)
Q Consensus 156 ~~~~~~~~~~-~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~-~~-~y~~~~-~~~~~i~s~l~~--~~~~~ln~ 229 (1034)
++++||++.+ ++.++++.+|.||+|||||+|+|+.|++++++..++ .. .|.+++ +.++|++|+|.. .+.+++++
T Consensus 363 ~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~ 442 (715)
T 2va8_A 363 DIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLG 442 (715)
T ss_dssp CC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHH
T ss_pred CCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHH
Confidence 9999996543 258999999999999999999999999999998765 33 344454 678999999987 57777777
Q ss_pred hhhcccccchhhHHHHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHH
Q psy13788 230 EVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLI 309 (1034)
Q Consensus 230 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~ 309 (1034)
++ +.|++.+.+|+.+|+.+||+|.|..
T Consensus 443 ~~---------------------------------~~g~~~~~~~~~~~l~~~~~~~~~~-------------------- 469 (715)
T 2va8_A 443 IL---------------------------------SAEGNLSEKQLENFAYESLLAKQLV-------------------- 469 (715)
T ss_dssp HH---------------------------------HHHCSEEHHHHHHHHTTSSSCHHHH--------------------
T ss_pred HH---------------------------------hccccCCHHHHHHHHHhhHHHhhcc--------------------
Confidence 77 9999999999999999999998322
Q ss_pred HHHHHHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCC--CCCHHHHHHhhccccccccCc
Q psy13788 310 QHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTK--VLDDVGILSMISQAHEFEQLK 387 (1034)
Q Consensus 310 ~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~--~~~~~~lL~ll~~s~EF~~i~ 387 (1034)
...++++++.|.+.|+|..+ ++.+.+|++|+++|+||++|.++..|...++. .....++|+++|.+.||++++
T Consensus 470 ---~~~~~~al~~L~~~g~i~~~--~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~ 544 (715)
T 2va8_A 470 ---DVYFDRAIRWLLEHSFIKEE--GNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVS 544 (715)
T ss_dssp ---HHHHHHHHHHHHHTTSEEEC--SSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCC
T ss_pred ---hHHHHHHHHHHHHCcCEeec--CCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCc
Confidence 12388999999999999876 56799999999999999999999999999887 478899999999999999999
Q ss_pred CChhhhHHHHHHhhhcc-----ccCCCCC-CC--CcchhHHHHHHHHHhCCCCCC----cCh-HhhHHHHHHhHHHHHHH
Q psy13788 388 VRDEELHELDNLTQECC-----EIPIRGG-SE--NVHGKVNILLQTLLSRGRVNS----FSL-VSDLEYVNQNVIRIIRA 454 (1034)
Q Consensus 388 ~r~~E~~~l~~l~~~~~-----~~~~~~~-~~--~~~~Kv~~LLqa~i~~~~~~~----~~l-~gd~~~i~~~a~rll~a 454 (1034)
+|++|..++.++..... +.+.+.. .+ .++.|+++|||+|+++.+++. |++ .||+++++++|.|+++|
T Consensus 545 ~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a 624 (715)
T 2va8_A 545 VGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYS 624 (715)
T ss_dssp CCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 99999999988864211 1122110 11 167899999999999999874 888 59999999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhccCCCCCcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHh
Q psy13788 455 LFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISY 533 (1034)
Q Consensus 455 l~ei~~~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~ 533 (1034)
+.+||..+||...+..+..|++||++|+|++.+||+|+ |++++.++|+|+++|+ |+++|+ ++++++.+
T Consensus 625 ~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~ql----------p~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~ 693 (715)
T 2va8_A 625 AYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQI----------SGVGRKRARLLYNNGIKELGDVV-MNPDKVKN 693 (715)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTS----------TTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHcCCChhhcchhhC----------CCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999 999999 99999999
Q ss_pred hhcCchhHHHHHH-HhhcCCcce
Q psy13788 534 MLRDPHVGDKVKQ-CAWEIPLLE 555 (1034)
Q Consensus 534 ~l~~~~~g~~i~~-~~~~~P~l~ 555 (1034)
+++ ++.|+++++ +.+++|.++
T Consensus 694 ~l~-~~~~~~i~~~~~~~~~~~~ 715 (715)
T 2va8_A 694 LLG-QKLGEKVVQEAARLLNRFH 715 (715)
T ss_dssp HHC-HHHHHHHHHHHHHHHC---
T ss_pred HhC-hhHHHHHHHHHHHhhccCC
Confidence 998 899999999 667788653
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.7e-52 Score=517.53 Aligned_cols=467 Identities=18% Similarity=0.279 Sum_probs=359.4
Q ss_pred cccccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh----hhhHH----Hhhcc------------
Q psy13788 3 ALTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR----IQSLV----YDTAY------------ 61 (1034)
Q Consensus 3 ~~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~------------ 61 (1034)
.+++++++|||||+|++++ +||+.+|.++.++.. ..+++++|++.+ +.... +...+
T Consensus 134 ~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~ii~lSATl~n~~~~~~~l~~~~~~~~~rp~~l~~~~~~~ 210 (720)
T 2zj8_A 134 SWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG---KAQIIGLSATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQ 210 (720)
T ss_dssp TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT---TBEEEEEECCCSCHHHHHHHTTEEEEECCCCSSEEEEEEEET
T ss_pred hhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc---CCeEEEEcCCcCCHHHHHHHhCCcccCCCCCCCcceEEEEeC
Confidence 4578999999999999999 999999999999652 678999888632 11110 00011
Q ss_pred ------------------------ccCCceEEeccCCcchhHHHHHHHHHHHHHHhhc---------------cc-----
Q psy13788 62 ------------------------HTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQ---------------GT----- 97 (1034)
Q Consensus 62 ------------------------~~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~---------------~~----- 97 (1034)
.++.+++||+++. ..+...+..+.+.... +.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr-----~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 285 (720)
T 2zj8_A 211 GFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMR-----RKAERVALELSKKVKSLLTKPEIRALNELADSLEENPT 285 (720)
T ss_dssp TEEEETTSCEEECSSTTHHHHHHHHTTCCEEEECSCH-----HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHH
T ss_pred CeeeccccchhhhhHHHHHHHHHHhCCCCEEEEecCH-----HHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccc
Confidence 1234577877652 1111222222221110 00
Q ss_pred --cc-eeccccc-eecchhH-----HHHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCee
Q psy13788 98 --EM-YNAKHGC-YVHIGIL-----DVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCY 167 (1034)
Q Consensus 98 --~~-~~~~~g~-~~h~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~ 167 (1034)
.+ .....|+ +||+|+. .+++.|..+ .+...++|.+++ .|||+|+ +|||.++++|| ..| +
T Consensus 286 ~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g--------~~~vlvaT~~l~-~Gvdip~~~~VI~~~~~yd-~~g-~ 354 (720)
T 2zj8_A 286 NEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKG--------IIKAVVATPTLS-AGINTPAFRVIIRDIWRYS-DFG-M 354 (720)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT--------SSCEEEECSTTG-GGCCCCBSEEEECCSEECC-SSS-C
T ss_pred hHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCC--------CCeEEEECcHhh-ccCCCCceEEEEcCCeeec-CCC-C
Confidence 00 0012467 6788776 233444332 334455555555 3899998 99999999999 333 6
Q ss_pred eecChhhHHHHhhccCCCCccccceEEEECCcccHHHH-HHHh-cCCcceeccccc--chHHHHhhhhhcccccchhhHH
Q psy13788 168 VHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHY-LSLL-TNQIPIESNFVA--NLADNLNAEVALGTIGNIDEAV 243 (1034)
Q Consensus 168 ~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y-~~~~-~~~~~i~s~l~~--~~~~~ln~e~~~~~~~~~~~~~ 243 (1034)
.++++.+|.||+|||||+|+|+.|++++++..++.+.+ .+++ +.++|++|++.. .+.+++++++
T Consensus 355 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i------------ 422 (720)
T 2zj8_A 355 ERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALI------------ 422 (720)
T ss_dssp EECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHH------------
T ss_pred ccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHH------------
Confidence 89999999999999999999999999999998765553 3455 678999999976 5777777777
Q ss_pred HHHHHHHHHHHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHh
Q psy13788 244 RWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQIL 323 (1034)
Q Consensus 244 ~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L 323 (1034)
+.|++.+.+|+.+|+.+||+|.|+..+ ..+.+.++++++.|
T Consensus 423 ---------------------~~~~~~~~~d~~~~l~~~~~~~~~~~~------------------~~~~~~~~~~l~~L 463 (720)
T 2zj8_A 423 ---------------------ATFGYSTVEEILKFISNTFYAYQRKDT------------------YSLEEKIRNILYFL 463 (720)
T ss_dssp ---------------------HHSCCCSHHHHHHHHHTSHHHHHCSCC------------------HHHHHHHHHHHHHH
T ss_pred ---------------------HhCCCCCHHHHHHHHHhChHHHhccch------------------HHHHHHHHHHHHHH
Confidence 999999999999999999999966421 44567899999999
Q ss_pred hhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCC---CCHHHHHHhhccccccccCcCChhhhHHHHHHh
Q psy13788 324 DKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKV---LDDVGILSMISQAHEFEQLKVRDEELHELDNLT 400 (1034)
Q Consensus 324 ~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~---~~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l~ 400 (1034)
.+.|+|..+. ++.+.+|++|+++|+||++|.|+..|...++.. ....++|+++|.++||+++++|++|..++.++.
T Consensus 464 ~~~~~i~~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~ 542 (720)
T 2zj8_A 464 LENEFIEISL-EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEY 542 (720)
T ss_dssp HHTTSEEECT-TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHH
T ss_pred HHCCCeeECC-CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHHHHHH
Confidence 9999998432 678999999999999999999999999988774 778899999999999999999999999988875
Q ss_pred hh-----ccccCCCCCCCC-------cchhHHHHHHHHHhCCCCC----CcCh-HhhHHHHHHhHHHHHHHHHHHHHhcc
Q psy13788 401 QE-----CCEIPIRGGSEN-------VHGKVNILLQTLLSRGRVN----SFSL-VSDLEYVNQNVIRIIRALFEITLHRN 463 (1034)
Q Consensus 401 ~~-----~~~~~~~~~~~~-------~~~Kv~~LLqa~i~~~~~~----~~~l-~gd~~~i~~~a~rll~al~ei~~~~~ 463 (1034)
.. ..+.+++...+. ++.|+++|||+|+++.+++ +|++ .||+++++++|.|+++|+++||..+|
T Consensus 543 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g 622 (720)
T 2zj8_A 543 YEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLG 622 (720)
T ss_dssp HHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 32 123444332122 6789999999999999975 5776 59999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCCcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCchhHH
Q psy13788 464 NAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVGD 542 (1034)
Q Consensus 464 ~~~~~~~~l~L~k~l~~~~w~~~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~~~g~ 542 (1034)
|...+..+..|++||+||+|++++||+|| ||+++.++|+|+++|+ |+.+|++++++++..+ ++.|+
T Consensus 623 ~~~~~~~l~~l~~rl~~gv~~e~~~L~ql----------p~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~---~~~~~ 689 (720)
T 2zj8_A 623 AYEIVDYLETLRVRVKYGIREELIPLMQL----------PLVGRRRARALYNSGFRSIEDISQARPEELLKI---EGIGV 689 (720)
T ss_dssp CGGGHHHHHHHHHHHHHTCCGGGGGGTTS----------TTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTS---TTCCH
T ss_pred cHHHHHHHHHHHHHHHcCCCccchhhhhC----------CCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHh---HhHHH
Confidence 98766666679999999999999999999 9999999999999999 9999999999999988 55555
Q ss_pred HHHHHh----hcCCc
Q psy13788 543 KVKQCA----WEIPL 553 (1034)
Q Consensus 543 ~i~~~~----~~~P~ 553 (1034)
++++.+ .++|.
T Consensus 690 ~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 690 KTVEAIFKFLGKNVK 704 (720)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccc
Confidence 555554 45554
No 6
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=100.00 E-value=2.1e-48 Score=434.91 Aligned_cols=308 Identities=24% Similarity=0.350 Sum_probs=250.7
Q ss_pred CCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhhhHHHHHHhhhccccCCC-CCCC
Q psy13788 335 TRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIR-GGSE 413 (1034)
Q Consensus 335 ~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l~~~~~~~~~~-~~~~ 413 (1034)
.|.+.||++||+||+|||+++||..|++.+++.++..++|+++|.|.||+++++|++|+.++.+|.+. ++++++ ...+
T Consensus 10 ~g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~-~~~~~~~~~~~ 88 (339)
T 2q0z_X 10 HMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQK-VPHKLNNPKFN 88 (339)
T ss_dssp ---------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHH-SSSCCSSCCTT
T ss_pred CceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHh-CCCccccCCCC
Confidence 47799999999999999999999999999999999999999999999999999999999999999987 677764 4577
Q ss_pred CcchhHHHHHHHHHhCCCCCCcChHhhHHHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccCCCCCcccccc
Q psy13788 414 NVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIK 493 (1034)
Q Consensus 414 ~~~~Kv~~LLqa~i~~~~~~~~~l~gd~~~i~~~a~rll~al~ei~~~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~ql~ 493 (1034)
+++.|+++||||||+|++++ .++.+|+.+|+++|.||++|+++||..+||...+..+++|+|||+||+|++++||+||
T Consensus 89 ~~~~K~~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Ql- 166 (339)
T 2q0z_X 89 DPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQL- 166 (339)
T ss_dssp CHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGS-
T ss_pred CHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCceecC-
Confidence 89999999999999999998 6889999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhcCCcceEEEEEEe---e-ccce
Q psy13788 494 LVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWEIPLLEIESKLLP---I-TRTV 567 (1034)
Q Consensus 494 ~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~~P~l~~~~~~~p---i-t~~~ 567 (1034)
|+++++++++|+++|+ |+++|.++++++++.+++ ++++++++.+++++||++++++.++| + +.+.
T Consensus 167 ---------p~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~ 237 (339)
T 2q0z_X 167 ---------PHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGP 237 (339)
T ss_dssp ---------TTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSE
T ss_pred ---------CCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCc
Confidence 9999999999999999 999999999999999997 56789999999999999999999995 5 4679
Q ss_pred EEEEEEEEeCCCCCc-----cCCCCCCCcEEEEEEcCCCCeeEEEeeEEeecccccccCceeEEEEeecCCCCCCceEEE
Q psy13788 568 LKIHLTIKANFSWND-----KNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIR 642 (1034)
Q Consensus 568 l~v~l~~~~~~~~~~-----~~~~~~~e~~~l~v~D~~~~~i~~~~~~~l~~~~~~~~~~~~l~f~vpl~~p~p~~~~i~ 642 (1034)
++|+|++++++.|++ +||..+.|.||+||+|+++|.|++++++.+.++ ....+.|++| +|.+++|+++
T Consensus 238 ~~l~v~l~~~~~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~~-----~~~~l~f~~P--~~g~~~~~v~ 310 (339)
T 2q0z_X 238 VVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK-----AKVKLDFVAP--ATGAHNYTLY 310 (339)
T ss_dssp EEEEEEEEECSSCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSE-----EEEEEEEECC--SSEEEEEEEE
T ss_pred EEEEEEEEECCCCCCceeCCCCCCCCCCcEEEEEEECCCCEEEEEEEEecccc-----eEEEEEEECC--CCCCeeEEEE
Confidence 999999998876654 455556899999999999999999999887653 2467999999 5667899999
Q ss_pred eeccccccccccccccccc
Q psy13788 643 AMSDRYLGSVVQHSMSFKH 661 (1034)
Q Consensus 643 ~~Sd~wlg~e~~~~vs~~~ 661 (1034)
++||+|+|++...++++.-
T Consensus 311 ~vSD~ylG~D~~~~i~~~v 329 (339)
T 2q0z_X 311 FMSDAYMGCDQEYKFSVDV 329 (339)
T ss_dssp EEESSCSSCCEEEEEEEEE
T ss_pred EEcccccCcceEEEEEEEE
Confidence 9999999999999987753
No 7
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=100.00 E-value=1.7e-48 Score=434.08 Aligned_cols=306 Identities=22% Similarity=0.294 Sum_probs=276.4
Q ss_pred CCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhhhHHHHHHhhhccccCC--CCCC
Q psy13788 335 TRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPI--RGGS 412 (1034)
Q Consensus 335 ~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E~~~l~~l~~~~~~~~~--~~~~ 412 (1034)
++.+.||++|++||+|||+|.||..|.+.+++.++..++|+++|.|.||+++++|++|+.++.+|... +++++ ++..
T Consensus 6 ~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~-~~~~~~~~~~~ 84 (328)
T 3im1_A 6 TEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKR-LPLRFPEHTSS 84 (328)
T ss_dssp CCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTT-SSSCCCTTSCS
T ss_pred CCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHh-CCCcccccCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999987 66664 4567
Q ss_pred CCcchhHHHHHHHHHhCCCCCCcChHhhHHHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccCCCCCccccc
Q psy13788 413 ENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQI 492 (1034)
Q Consensus 413 ~~~~~Kv~~LLqa~i~~~~~~~~~l~gd~~~i~~~a~rll~al~ei~~~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~ql 492 (1034)
++++.|+++|||||++|++++. ++.+|+.+|+++|.||++|+++||..+||.. +..+++|+|||+||+|++++||+||
T Consensus 85 ~~~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Ql 162 (328)
T 3im1_A 85 GSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQI 162 (328)
T ss_dssp SSHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGS
T ss_pred CCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeCC
Confidence 7899999999999999999987 8889999999999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhcCCcceEEEEEEe---e-ccc
Q psy13788 493 KLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWEIPLLEIESKLLP---I-TRT 566 (1034)
Q Consensus 493 ~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~~P~l~~~~~~~p---i-t~~ 566 (1034)
||++++++++|+++|+ |+++|+++++++++.+++ ++++++++++++++||++++++.+++ + +.+
T Consensus 163 ----------p~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~ 232 (328)
T 3im1_A 163 ----------PHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGV 232 (328)
T ss_dssp ----------TTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTS
T ss_pred ----------CCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCC
Confidence 9999999999999999 999999999999999887 67799999999999999999999975 6 568
Q ss_pred eEEEEEEEEeCCCCC------ccCCCCCCCcEEEEEEcCCCCeeEEEeeEEeecccccccCceeEEEEeecCCCCCCceE
Q psy13788 567 VLKIHLTIKANFSWN------DKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYL 640 (1034)
Q Consensus 567 ~l~v~l~~~~~~~~~------~~~~~~~~e~~~l~v~D~~~~~i~~~~~~~l~~~~~~~~~~~~l~f~vpl~~p~p~~~~ 640 (1034)
.++++|+++++|.|+ |+||..+.|+||+||+|++++.+++.+++.+.+. .....++|.+| .+.+.+|.
T Consensus 233 ~~~l~v~l~~~~~~~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~----~~~~~~~f~~p--~~g~~~~~ 306 (328)
T 3im1_A 233 KQKITIQLTRDVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE----TQQYELEFDTP--TSGKHNLT 306 (328)
T ss_dssp EEEEEEEEEESSCCSCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSS----EEEEEEEEECC--CSEEEEEE
T ss_pred eEEEEEEEEECCCCCCCcEECCCCCCCccCCEEEEEEECCCCeEEEEeeeccccc----ceEEEEEEEcC--CCCcEEEE
Confidence 999999999999874 4565555999999999999999998777776542 12345555555 44567899
Q ss_pred EEeeccccccccccccccc
Q psy13788 641 IRAMSDRYLGSVVQHSMSF 659 (1034)
Q Consensus 641 i~~~Sd~wlg~e~~~~vs~ 659 (1034)
++++||+|+|++....+.+
T Consensus 307 v~~vsD~ylG~d~~~~~~l 325 (328)
T 3im1_A 307 IWCVCDSYLDADKELSFEI 325 (328)
T ss_dssp EEEEESSCSSCCEEEEEEE
T ss_pred EEEEecCCcceeEEEEEEE
Confidence 9999999999999887755
No 8
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=6.2e-36 Score=370.58 Aligned_cols=309 Identities=27% Similarity=0.434 Sum_probs=241.1
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+||.+|+|+|.++++.+. ++++++++||||||||++|.+|+++.+.+ +.+++|++|+++|+.|++++++ .+.. .|
T Consensus 21 ~g~~~l~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i~P~r~La~q~~~~~~-~~~~-~g 95 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFK-KWEK-IG 95 (702)
T ss_dssp C---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHT-TTTT-TT
T ss_pred CCCCCCCHHHHHHHHHHh-CCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEEeCcHHHHHHHHHHHH-HHHh-cC
Confidence 467779999999999976 78999999999999999999999988765 6899999999999999999994 5555 58
Q ss_pred CeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhcc
Q psy13788 774 KKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYT 852 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~ 852 (1034)
++++.++|+.....+...+++|+|+||++|..++++ ....++++++||+||||++.+ +++..++.++.+++..
T Consensus 96 ~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~---- 169 (702)
T 2p6r_A 96 LRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---- 169 (702)
T ss_dssp CCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH----
T ss_pred CEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHc--ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc----
Confidence 999999998877666567899999999999888874 445588999999999999987 7999999999988743
Q ss_pred CCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhh----h--hccHHHHHHHHhhCC
Q psy13788 853 KRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRM----A--KMNKPIYTAIKQHSP 926 (1034)
Q Consensus 853 ~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~----~--~~~~~~~~~l~~~~~ 926 (1034)
.++.|+|++|||++|.+++++|++.. .+.+..+|+++...+...+...+.... . .+...+.+.+ ..
T Consensus 170 ~~~~~ii~lSATl~n~~~~~~~l~~~-----~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 241 (702)
T 2p6r_A 170 NKALRVIGLSATAPNVTEIAEWLDAD-----YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV---AE 241 (702)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHTTCE-----EEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH---HT
T ss_pred CcCceEEEECCCcCCHHHHHHHhCCC-----cccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHH---hc
Confidence 45799999999999999999999843 256677888887665422111111100 0 0122223333 35
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHh---hcCCHHHHHHhhhchhhhcCCCCHHHHHHh
Q psy13788 927 EKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVD---NIKDSNLKLTIAFGIGFHHAAAEAAQSSAL 1003 (1034)
Q Consensus 927 ~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~d~~l~~~l~~gv~~~h~~~~~~~R~~i 1003 (1034)
++++||||+++++|+.++..|.+.+... +... +..+.+.+ ...++.+..+++.||++|||+|++++|+.+
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~------~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 314 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKY------VENE-GLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVV 314 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTT------CCCS-SHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhh------cChH-HHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHH
Confidence 6899999999999999999998765431 1111 11112211 112456788889999999999999999999
Q ss_pred cccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 1004 QMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1004 e~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++ . |++|+++|||||+++++|| |+.
T Consensus 315 ~~--~--f~~g~~~vlvaT~~l~~Gi-dip 339 (702)
T 2p6r_A 315 ED--A--FRRGNIKVVVATPTLAAGV-NLP 339 (702)
T ss_dssp HH--H--HHTTSCCEEEECSTTTSSS-CCC
T ss_pred HH--H--HHCCCCeEEEECcHHhccC-CCC
Confidence 98 8 9999999999999999999 974
No 9
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.4e-36 Score=374.00 Aligned_cols=310 Identities=27% Similarity=0.437 Sum_probs=241.6
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+||.+|+|+|.++++.++.++++++++||||||||++|.+|+++.+... +.+++|++|+++|+.|++++|. .+.+ .|
T Consensus 19 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~~l~i~P~raLa~q~~~~~~-~l~~-~g 95 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-GGKAVYIVPLKALAEEKFQEFQ-DWEK-IG 95 (720)
T ss_dssp TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-CSEEEEECSSGGGHHHHHHHTG-GGGG-GT
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHHHHH-HHHh-cC
Confidence 4677799999999998444799999999999999999999999887632 6899999999999999999995 5655 58
Q ss_pred CeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhcc
Q psy13788 774 KKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYT 852 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~ 852 (1034)
++++.++|+...+.+...+++|+|+||++|..++++ ....++++++||+||||++.+ .++..++.++.+++
T Consensus 96 ~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------ 167 (720)
T 2zj8_A 96 LRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------ 167 (720)
T ss_dssp CCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------
T ss_pred CEEEEecCCCCccccccCCCCEEEECHHHHHHHHHc--ChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------
Confidence 999999998877766667899999999999888874 445578999999999999988 89999999998774
Q ss_pred CCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchh----hhhccHHHHHHHHhhCCCC
Q psy13788 853 KRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPR----MAKMNKPIYTAIKQHSPEK 928 (1034)
Q Consensus 853 ~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 928 (1034)
.+.|+|++|||++|++++++|++.. .+.+..||+++...+.......+... .......+.+.+ ..++
T Consensus 168 -~~~~ii~lSATl~n~~~~~~~l~~~-----~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 238 (720)
T 2zj8_A 168 -GKAQIIGLSATIGNPEELAEWLNAE-----LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI---RKKK 238 (720)
T ss_dssp -TTBEEEEEECCCSCHHHHHHHTTEE-----EEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH---HTTC
T ss_pred -cCCeEEEEcCCcCCHHHHHHHhCCc-----ccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHH---hCCC
Confidence 2789999999999999999999743 24567788887765432111111110 111222222333 3468
Q ss_pred CeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhc----CCHHHHHHhhhchhhhcCCCCHHHHHHhc
Q psy13788 929 PVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNI----KDSNLKLTIAFGIGFHHAAAEAAQSSALQ 1004 (1034)
Q Consensus 929 ~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~d~~l~~~l~~gv~~~h~~~~~~~R~~ie 1004 (1034)
++||||+++++|+.++..|.+.+..... ......+....+.+ .+..|..+++.||++|||+|++++|+.++
T Consensus 239 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 313 (720)
T 2zj8_A 239 GALIFVNMRRKAERVALELSKKVKSLLT-----KPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVE 313 (720)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHGGGSC-----HHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHHhcC-----hhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 9999999999999999999876543100 00112223333333 24458888899999999999999999999
Q ss_pred ccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 1005 MPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1005 ~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+ . |++|+++|||||+++++|| |+.
T Consensus 314 ~--~--f~~g~~~vlvaT~~l~~Gv-dip 337 (720)
T 2zj8_A 314 E--N--FRKGIIKAVVATPTLSAGI-NTP 337 (720)
T ss_dssp H--H--HHTTSSCEEEECSTTGGGC-CCC
T ss_pred H--H--HHCCCCeEEEECcHhhccC-CCC
Confidence 9 8 9999999999999999999 974
No 10
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.6e-35 Score=364.97 Aligned_cols=312 Identities=27% Similarity=0.413 Sum_probs=241.8
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+||.+|+|+|.++++.++.++++++++||||||||++|.+++++.+... +.+++|++|+++|+.|++++++ .+.. .|
T Consensus 26 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~il~i~P~r~La~q~~~~~~-~~~~-~g 102 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-GGKAIYVTPLRALTNEKYLTFK-DWEL-IG 102 (715)
T ss_dssp TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-CSEEEEECSCHHHHHHHHHHHG-GGGG-GT
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-CCeEEEEeCcHHHHHHHHHHHH-Hhhc-CC
Confidence 4677799999999999555899999999999999999999999887643 6899999999999999999994 5655 58
Q ss_pred CeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhcc
Q psy13788 774 KKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYT 852 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~ 852 (1034)
++++.++|+..........++|+|+||++|..++++ ....++++++||+||||.+.+ .++..++.++.+++
T Consensus 103 ~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~------ 174 (715)
T 2va8_A 103 FKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRH--RPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK------ 174 (715)
T ss_dssp CCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHH--CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH------
T ss_pred CEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhC--ChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc------
Confidence 999999998877665566899999999999888874 444588999999999999987 78999999888774
Q ss_pred CCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCC------CCch---hhhhccHHHHHHHH-
Q psy13788 853 KRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGK------QYCP---RMAKMNKPIYTAIK- 922 (1034)
Q Consensus 853 ~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~------~~~~---~~~~~~~~~~~~l~- 922 (1034)
+.|+|++|||++|++++++|++.. .+....||+++...+...... .+.. .........+..+.
T Consensus 175 --~~~ii~lSATl~n~~~~~~~l~~~-----~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (715)
T 2va8_A 175 --RRNLLALSATISNYKQIAKWLGAE-----PVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLD 247 (715)
T ss_dssp --TSEEEEEESCCTTHHHHHHHHTCE-----EEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHH
T ss_pred --cCcEEEEcCCCCCHHHHHHHhCCC-----ccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHH
Confidence 689999999999999999999843 245667888877554321100 0000 00000122233332
Q ss_pred hhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCC-ChHHHHHHHhhcC------CHHHHHHhhhchhhhcCCC
Q psy13788 923 QHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHT-SDAEMDNIVDNIK------DSNLKLTIAFGIGFHHAAA 995 (1034)
Q Consensus 923 ~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~------d~~l~~~l~~gv~~~h~~~ 995 (1034)
....++++||||+++++|+.++..|.+.+... ++.. ...++....+.+. ++.|..+++.||++|||+|
T Consensus 248 ~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l 322 (715)
T 2va8_A 248 SLSKNGQVLVFRNSRKMAESTALKIANYMNFV-----SLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGL 322 (715)
T ss_dssp HHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS-----CCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTS
T ss_pred HHhcCCCEEEEECCHHHHHHHHHHHHHHHhhc-----cCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCC
Confidence 23467899999999999999999998754321 1110 1123334444442 3568888899999999999
Q ss_pred CHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 996 EAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 996 ~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+.++|+.+++ . |++|+++|||||+++++|| |+.
T Consensus 323 ~~~~r~~v~~--~--f~~g~~~vlvaT~~l~~Gi-dip 355 (715)
T 2va8_A 323 SKALRDLIEE--G--FRQRKIKVIVATPTLAAGV-NLP 355 (715)
T ss_dssp CHHHHHHHHH--H--HHTTCSCEEEECGGGGGSS-CCC
T ss_pred CHHHHHHHHH--H--HHcCCCeEEEEChHHhccc-CCC
Confidence 9999999999 8 9999999999999999999 974
No 11
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-34 Score=336.01 Aligned_cols=293 Identities=15% Similarity=0.188 Sum_probs=214.4
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC------CCeEEE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP------EAKVVY 749 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~------~~~~lv 749 (1034)
++++....++.. .+|..|+|+|.++++.++ +++|++++||||||||++|++|++..+...+ ++++||
T Consensus 62 ~l~~~l~~~l~~------~g~~~pt~iQ~~ai~~i~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~li 134 (434)
T 2db3_A 62 DLRDIIIDNVNK------SGYKIPTPIQKCSIPVIS-SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI 134 (434)
T ss_dssp CCCHHHHHHHHH------TTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEE
T ss_pred CCCHHHHHHHHH------cCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEE
Confidence 555555555544 356679999999999998 8899999999999999999999998886532 579999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEec
Q psy13788 750 IAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDE 826 (1034)
Q Consensus 750 i~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDE 826 (1034)
++||++|+.|+++.+.+ +....++++..++|+.....+. ..+++|+|+||+++..++.+ ....+.+++++|+||
T Consensus 135 l~PtreLa~Q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 135 VSPTRELAIQIFNEARK-FAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR--TFITFEDTRFVVLDE 211 (434)
T ss_dssp ECSSHHHHHHHHHHHHH-HTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT--TSCCCTTCCEEEEET
T ss_pred EecCHHHHHHHHHHHHH-HhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh--CCcccccCCeEEEcc
Confidence 99999999999999885 4444678888899987654332 35789999999999887763 345678999999999
Q ss_pred ccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHh-HhcccCCceeecCCC-CcccccEEEEecCC
Q psy13788 827 IHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLAT-WLNITKQGMYNFRPS-VRPVPLEVHISGFP 902 (1034)
Q Consensus 827 aH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~-~l~~~~~~~~~~~~~-~r~~~l~~~~~~~~ 902 (1034)
||++.+ +|...+..++..+. .....|++++|||+++. ..++. ++. ....+..... .....+...+....
T Consensus 212 ah~~~~~gf~~~~~~i~~~~~-----~~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~i~~~~~~~~ 284 (434)
T 2db3_A 212 ADRMLDMGFSEDMRRIMTHVT-----MRPEHQTLMFSATFPEEIQRMAGEFLK--NYVFVAIGIVGGACSDVKQTIYEVN 284 (434)
T ss_dssp HHHHTSTTTHHHHHHHHHCTT-----SCSSCEEEEEESCCCHHHHHHHHTTCS--SCEEEEESSTTCCCTTEEEEEEECC
T ss_pred HhhhhccCcHHHHHHHHHhcC-----CCCCceEEEEeccCCHHHHHHHHHhcc--CCEEEEeccccccccccceEEEEeC
Confidence 999987 78888877765331 24678999999999762 22322 222 1111111111 11112222222111
Q ss_pred CCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHH
Q psy13788 903 GKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKL 982 (1034)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~ 982 (1034)
.......+.+.+.... .++||||++++.|+.++..|...
T Consensus 285 -------~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~-------------------------------- 323 (434)
T 2db3_A 285 -------KYAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEK-------------------------------- 323 (434)
T ss_dssp -------GGGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHT--------------------------------
T ss_pred -------cHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhC--------------------------------
Confidence 1111223445555543 35999999999999988877542
Q ss_pred HhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 983 TIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 983 ~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++.+..+||++++.+|+.+++ . |++|+.+|||||+++++|+ |+.
T Consensus 324 --~~~~~~lhg~~~~~~R~~~l~--~--F~~g~~~vLvaT~v~~rGl-Di~ 367 (434)
T 2db3_A 324 --EFPTTSIHGDRLQSQREQALR--D--FKNGSMKVLIATSVASRGL-DIK 367 (434)
T ss_dssp --TCCEEEESTTSCHHHHHHHHH--H--HHTSSCSEEEECGGGTSSC-CCT
T ss_pred --CCCEEEEeCCCCHHHHHHHHH--H--HHcCCCcEEEEchhhhCCC-Ccc
Confidence 223789999999999999977 7 9999999999999999999 985
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.7e-33 Score=339.16 Aligned_cols=301 Identities=20% Similarity=0.250 Sum_probs=221.6
Q ss_pred cccCCCChhHHHHHHHHhc-CCCcEEEEcCCCChhhHHHHHHHHHHHHhCC-----CCeEEEEcCcHHHHHHHHHHHHHH
Q psy13788 694 YKFSHFNPIQTQIFHCLYH-TDNNVLLGAPTGSGKTIAAEITCFRVFKQCP-----EAKVVYIAPLKALVKERVADWKVK 767 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~-~~~~vll~apTGsGKT~~~~l~il~~l~~~~-----~~~~lvi~Pt~~L~~q~~~~~~~~ 767 (1034)
++|..|+|+|.++++.++. .+++++++||||||||++|++|+++.+...+ +.++||++||++|+.|+++.+.+.
T Consensus 90 ~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~ 169 (563)
T 3i5x_A 90 MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI 169 (563)
T ss_dssp TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHH
Confidence 4677799999999999985 3679999999999999999999999887643 358999999999999999999876
Q ss_pred hhhh---cCCeEEEEcCCCCccccc----cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHH
Q psy13788 768 FEAR---LKKKVVELTGDVTPDIQA----ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839 (1034)
Q Consensus 768 ~~~~---~~~~v~~~~g~~~~~~~~----~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~ 839 (1034)
+... .+..+..+.|+....... ..+++|+|+||+++..++.++ ....+..+++||+||||++.+ +|++.++
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~l~~~~f~~~~~ 248 (563)
T 3i5x_A 170 HDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEADRLLEIGFRDDLE 248 (563)
T ss_dssp HHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred HhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc-cccccccceEEEEeCHHHHhccchHHHHH
Confidence 5432 245677777776543322 237899999999998777643 234578899999999999987 7999999
Q ss_pred HHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCcee-ecCCCCcc---cccEEEEecCCCCCCchhhhhcc
Q psy13788 840 VIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMY-NFRPSVRP---VPLEVHISGFPGKQYCPRMAKMN 914 (1034)
Q Consensus 840 ~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~-~~~~~~r~---~~l~~~~~~~~~~~~~~~~~~~~ 914 (1034)
.++..+.........++|++++|||+++. ..+..+.......++ ...+...+ ..+....... ...........
T Consensus 249 ~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 326 (563)
T 3i5x_A 249 TISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS--EKFANSIFAAV 326 (563)
T ss_dssp HHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE--SSTTHHHHHHH
T ss_pred HHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEEC--chhHhhHHHHH
Confidence 99988876655566789999999999884 555554433322222 11111111 1111111111 11112222233
Q ss_pred HHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCC
Q psy13788 915 KPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAA 994 (1034)
Q Consensus 915 ~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~ 994 (1034)
..+...+.....+.++||||+|++.|+.++..|.+.+.. +.++..+||+
T Consensus 327 ~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-------------------------------~~~v~~~h~~ 375 (563)
T 3i5x_A 327 EHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-------------------------------DLPILEFHGK 375 (563)
T ss_dssp HHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT-------------------------------TSCEEEESTT
T ss_pred HHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC-------------------------------CceEEEecCC
Confidence 344455555566789999999999999999888765432 1237889999
Q ss_pred CCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 995 AEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 995 ~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
|++.+|..+++ . |++|+++|||||+++++|| |+.
T Consensus 376 ~~~~~R~~~~~--~--f~~g~~~vLvaT~~~~~Gi-Dip 409 (563)
T 3i5x_A 376 ITQNKRTSLVK--R--FKKDESGILVCTDVGARGM-DFP 409 (563)
T ss_dssp SCHHHHHHHHH--H--HHHCSSEEEEECGGGTSSC-CCT
T ss_pred CCHHHHHHHHH--H--HhcCCCCEEEEcchhhcCC-Ccc
Confidence 99999999988 7 9999999999999999999 985
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=327.07 Aligned_cols=297 Identities=13% Similarity=0.146 Sum_probs=213.8
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC------------
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP------------ 743 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~------------ 743 (1034)
++++...+++.. .+|.+|+|+|.++++.++ .+++++++||||||||++|++|++..+...+
T Consensus 21 ~l~~~l~~~l~~------~~~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 21 EMGEIIMGNIEL------TRYTRPTPVQKHAIPIIK-EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp CCCHHHHHHHHH------HTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred CCCHHHHHHHHH------CCCCCCCHHHHHHHHHHc-cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 555555555544 356669999999999998 7899999999999999999999998775422
Q ss_pred -------CCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccc
Q psy13788 744 -------EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNR 813 (1034)
Q Consensus 744 -------~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~ 813 (1034)
++++||++||++|+.|+++.+.+.. ...++++..+.|+.....+. ..+++|+|+||+++..++.. ..
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--~~ 170 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER--GK 170 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHH-TTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT--TS
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHh-CcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc--CC
Confidence 2679999999999999999988644 44788899999887654322 35789999999999877763 34
Q ss_pred cccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHH-hHhcccCCceeecC-CCC
Q psy13788 814 NYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLA-TWLNITKQGMYNFR-PSV 889 (1034)
Q Consensus 814 ~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~-~~l~~~~~~~~~~~-~~~ 889 (1034)
..+.+++++|+||||++.+ +++..+..++.... .......+++++|||+++. ..+. .+++. ....... ...
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~---~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~ 245 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT---MPPKGVRHTMMFSATFPKEIQMLARDFLDE--YIFLAVGRVGS 245 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSS---CCCBTTBEEEEEESCCCHHHHHHHHHHCSS--CEEEEEC----
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhcc---CCCcCCcEEEEEEEeCCHHHHHHHHHHcCC--CEEEEeCCCCC
Confidence 4578899999999999876 67777666653211 1112367899999999763 3333 33331 1111111 111
Q ss_pred cccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHH
Q psy13788 890 RPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMD 969 (1034)
Q Consensus 890 r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~ 969 (1034)
.+..+...+...+ .......+.+.+.....++++||||++++.|+.++..|...
T Consensus 246 ~~~~i~~~~~~~~-------~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------- 299 (417)
T 2i4i_A 246 TSENITQKVVWVE-------ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE------------------- 299 (417)
T ss_dssp CCSSEEEEEEECC-------GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT-------------------
T ss_pred CccCceEEEEEec-------cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC-------------------
Confidence 1122222222111 11122345566666666789999999999999988877542
Q ss_pred HHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 970 NIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 970 ~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+..+..+||++++++|..+++ . |++|+.+|||||+++++|+ |+.
T Consensus 300 ---------------~~~~~~~h~~~~~~~r~~~~~--~--f~~g~~~vlvaT~~~~~Gi-dip 343 (417)
T 2i4i_A 300 ---------------GYACTSIHGDRSQRDREEALH--Q--FRSGKSPILVATAVAARGL-DIS 343 (417)
T ss_dssp ---------------TCCEEEECTTSCHHHHHHHHH--H--HHHTSSCEEEECHHHHTTS-CCC
T ss_pred ---------------CCCeeEecCCCCHHHHHHHHH--H--HHcCCCCEEEECChhhcCC-Ccc
Confidence 223789999999999999988 7 9999999999999999999 985
No 14
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-33 Score=356.97 Aligned_cols=306 Identities=25% Similarity=0.386 Sum_probs=228.5
Q ss_pred ccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 693 LYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 693 ~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
.++|. |+|+|.+|++.+. .+++++++||||||||++|++|++..+.. +.+++|++|+++|+.|+++++.+.++
T Consensus 180 ~~~f~-ltp~Q~~AI~~i~-~g~dvLV~ApTGSGKTlva~l~i~~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~~~--- 252 (1108)
T 3l9o_A 180 TYPFT-LDPFQDTAISCID-RGESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEFG--- 252 (1108)
T ss_dssp CCSSC-CCHHHHHHHHHHT-TTCCEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHTS---
T ss_pred hCCCC-CCHHHHHHHHHHH-cCCCEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEcCcHHHHHHHHHHHHHHhC---
Confidence 34555 9999999999987 88999999999999999999999998865 78999999999999999999987665
Q ss_pred CCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhc
Q psy13788 773 KKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSY 851 (1034)
Q Consensus 773 ~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~ 851 (1034)
.++.++|+.... .+++|+|+||+++..++.+ ....+.++++||+||||++.+ +++..++.++..
T Consensus 253 --~VglltGd~~~~----~~~~IlV~Tpe~L~~~L~~--~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~------- 317 (1108)
T 3l9o_A 253 --DVGLMTGDITIN----PDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL------- 317 (1108)
T ss_dssp --SEEEECSSCBCC----CSCSEEEEEHHHHHHHHHH--CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHH-------
T ss_pred --CccEEeCccccC----CCCCEEEeChHHHHHHHHc--CccccccCCEEEEhhhhhccccchHHHHHHHHHh-------
Confidence 577889987654 3689999999999887763 445578999999999999988 788888877743
Q ss_pred cCCCeEEEEEccCCCCHHHHHhHhcccC-CceeecCCCCcccccEEEEecCCCCCCch---------------hhhhc--
Q psy13788 852 TKRNVRLVGLSTALANAKDLATWLNITK-QGMYNFRPSVRPVPLEVHISGFPGKQYCP---------------RMAKM-- 913 (1034)
Q Consensus 852 ~~~~~~iv~lSATl~~~~~l~~~l~~~~-~~~~~~~~~~r~~~l~~~~~~~~~~~~~~---------------~~~~~-- 913 (1034)
++.++|+|+||||+++..+++.|++... ..+..+....+++++..++.......... ....+
T Consensus 318 l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~ 397 (1108)
T 3l9o_A 318 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 397 (1108)
T ss_dssp SCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHh
Confidence 3578999999999999999999987433 23555666778888776654322111000 00000
Q ss_pred ----------------------------cHHH---HHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccC
Q psy13788 914 ----------------------------NKPI---YTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVH 962 (1034)
Q Consensus 914 ----------------------------~~~~---~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~ 962 (1034)
...+ ...+.. ....++||||++++.|+.++..|..........
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e----- 471 (1108)
T 3l9o_A 398 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE----- 471 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC-------
T ss_pred hhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHH-----
Confidence 1112 222222 345699999999999999998875432221100
Q ss_pred CChHHHHHHHhhc------------CCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccC
Q psy13788 963 TSDAEMDNIVDNI------------KDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNF 1030 (1034)
Q Consensus 963 ~~~~~~~~~~~~i------------~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~ 1030 (1034)
...+..+.... ....+..++..||++|||+|++.+|+.+++ . |++|.++|||||+++++||
T Consensus 472 --~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~--~--F~~G~ikVLVAT~vla~GI- 544 (1108)
T 3l9o_A 472 --KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEI--L--FQEGFLKVLFATETFSIGL- 544 (1108)
T ss_dssp ----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHH--H--HHHTCCCEEEEESCCCSCC-
T ss_pred --HHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHH--H--HhCCCCeEEEECcHHhcCC-
Confidence 01111111111 012456778889999999999999999988 8 9999999999999999999
Q ss_pred CCC
Q psy13788 1031 DFN 1033 (1034)
Q Consensus 1031 Dfs 1033 (1034)
|+.
T Consensus 545 DiP 547 (1108)
T 3l9o_A 545 NMP 547 (1108)
T ss_dssp CC-
T ss_pred CCC
Confidence 984
No 15
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.4e-33 Score=337.50 Aligned_cols=301 Identities=20% Similarity=0.232 Sum_probs=218.6
Q ss_pred cccCCCChhHHHHHHHHhc-CCCcEEEEcCCCChhhHHHHHHHHHHHHhCC-----CCeEEEEcCcHHHHHHHHHHHHHH
Q psy13788 694 YKFSHFNPIQTQIFHCLYH-TDNNVLLGAPTGSGKTIAAEITCFRVFKQCP-----EAKVVYIAPLKALVKERVADWKVK 767 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~-~~~~vll~apTGsGKT~~~~l~il~~l~~~~-----~~~~lvi~Pt~~L~~q~~~~~~~~ 767 (1034)
++|..|+|+|.++++.++. .++++++.||||+|||++|++|+++.+...+ +.++||++||++|+.|+++.+.+.
T Consensus 39 ~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~ 118 (579)
T 3sqw_A 39 MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI 118 (579)
T ss_dssp TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHH
Confidence 4667799999999999885 3679999999999999999999998887643 468999999999999999999876
Q ss_pred hhh---hcCCeEEEEcCCCCccccc----cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHH
Q psy13788 768 FEA---RLKKKVVELTGDVTPDIQA----ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839 (1034)
Q Consensus 768 ~~~---~~~~~v~~~~g~~~~~~~~----~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~ 839 (1034)
+.. .....+..+.|+....... ..+++|+|+||+++..++... ....+..+++||+||||++.+ +|++.++
T Consensus 119 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~l~~~gf~~~~~ 197 (579)
T 3sqw_A 119 HDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEADRLLEIGFRDDLE 197 (579)
T ss_dssp HHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred HhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc-cccccccCCEEEEEChHHhhcCCCHHHHH
Confidence 542 1345677777776543322 236899999999997777642 234578899999999999987 7899999
Q ss_pred HHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceee-cCCCCc---ccccEEEEecCCCCCCchhhhhcc
Q psy13788 840 VIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYN-FRPSVR---PVPLEVHISGFPGKQYCPRMAKMN 914 (1034)
Q Consensus 840 ~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~-~~~~~r---~~~l~~~~~~~~~~~~~~~~~~~~ 914 (1034)
.++..+.........+.|++++|||+++. ..+..++......++. ...... ...+....... ...........
T Consensus 198 ~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 275 (579)
T 3sqw_A 198 TISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS--EKFANSIFAAV 275 (579)
T ss_dssp HHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE--SSTTHHHHHHH
T ss_pred HHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEe--cchhhhHHHHH
Confidence 99988876655556688999999999883 4455444322222211 111111 11112111111 11111222222
Q ss_pred HHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCC
Q psy13788 915 KPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAA 994 (1034)
Q Consensus 915 ~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~ 994 (1034)
..+...+.....+.++||||+|++.|+.++..|...+.. +..+..+||+
T Consensus 276 ~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-------------------------------~~~v~~~hg~ 324 (579)
T 3sqw_A 276 EHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-------------------------------DLPILEFHGK 324 (579)
T ss_dssp HHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT-------------------------------TSCEEEESTT
T ss_pred HHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC-------------------------------CCcEEEecCC
Confidence 334444555456789999999999999999888765431 1237889999
Q ss_pred CCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 995 AEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 995 ~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
|++++|..+++ . |++|+++|||||+++++|| |+.
T Consensus 325 ~~~~~R~~~~~--~--F~~g~~~vLVaT~~~~~Gi-Dip 358 (579)
T 3sqw_A 325 ITQNKRTSLVK--R--FKKDESGILVCTDVGARGM-DFP 358 (579)
T ss_dssp SCHHHHHHHHH--H--HHHCSSEEEEECGGGTSSC-CCT
T ss_pred CCHHHHHHHHH--H--hhcCCCeEEEEcchhhcCC-Ccc
Confidence 99999999988 7 9999999999999999999 985
No 16
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=347.21 Aligned_cols=303 Identities=25% Similarity=0.395 Sum_probs=226.7
Q ss_pred ccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 693 LYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 693 ~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
.|+|. |+|+|.+|++.+. .+++++++||||||||++|++|++..+.. +.+++|++|+++|+.|+++++.+.++
T Consensus 82 ~~~f~-L~~~Q~eai~~l~-~g~~vLV~apTGSGKTlva~lai~~~l~~--g~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCID-RGESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHH-HTCEEEEECCTTSCHHHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred hCCCC-CCHHHHHHHHHHH-cCCCEEEECCCCCChHHHHHHHHHHHhcc--CCeEEEECChHHHHHHHHHHHHHHhC---
Confidence 46676 9999999999987 78999999999999999999999988764 68999999999999999999987665
Q ss_pred CCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhc
Q psy13788 773 KKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSY 851 (1034)
Q Consensus 773 ~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~ 851 (1034)
+++.++|+.... .+++|+|+||+++..++.+ ....+.++++||+||||++.+ .++..++.++..
T Consensus 155 --~vglltGd~~~~----~~~~IvV~Tpe~L~~~L~~--~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~------- 219 (1010)
T 2xgj_A 155 --DVGLMTGDITIN----PDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL------- 219 (1010)
T ss_dssp --CEEEECSSCEEC----TTCSEEEEEHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH-------
T ss_pred --CEEEEeCCCccC----CCCCEEEEcHHHHHHHHHc--CcchhhcCCEEEEechhhhcccchhHHHHHHHHh-------
Confidence 578899987654 3689999999999877763 455678999999999999988 688888877743
Q ss_pred cCCCeEEEEEccCCCCHHHHHhHhccc-CCceeecCCCCcccccEEEEecCCCCC----------Cch-----hh-----
Q psy13788 852 TKRNVRLVGLSTALANAKDLATWLNIT-KQGMYNFRPSVRPVPLEVHISGFPGKQ----------YCP-----RM----- 910 (1034)
Q Consensus 852 ~~~~~~iv~lSATl~~~~~l~~~l~~~-~~~~~~~~~~~r~~~l~~~~~~~~~~~----------~~~-----~~----- 910 (1034)
++.++++|++|||++|..++++|++.. ...+..+....+|+++..++....... +.. ..
T Consensus 220 l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred cCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 356899999999999999999998732 223444555677788776654322100 000 00
Q ss_pred ----------------------------hhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccC
Q psy13788 911 ----------------------------AKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVH 962 (1034)
Q Consensus 911 ----------------------------~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~ 962 (1034)
......+...+... ...++||||+|++.|+.++..|.... +
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~--------~-- 368 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLD--------F-- 368 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSC--------C--
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCC--------C--
Confidence 00001122223222 34589999999999999888764310 0
Q ss_pred CChHH---HHH----HHhhcCC--------HHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhh
Q psy13788 963 TSDAE---MDN----IVDNIKD--------SNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSAN 1027 (1034)
Q Consensus 963 ~~~~~---~~~----~~~~i~d--------~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~ 1027 (1034)
....+ +.. ....+.+ ..+..++..||++|||+|++.+|+.+++ + |++|.++|||||+++++
T Consensus 369 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~--~--F~~G~ikVLVAT~~la~ 444 (1010)
T 2xgj_A 369 NSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEI--L--FQEGFLKVLFATETFSI 444 (1010)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHH--H--HHTTCCSEEEEEGGGGG
T ss_pred CChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHH--H--HhcCCCcEEEEehHhhc
Confidence 01111 111 1111211 2456778899999999999999999999 8 99999999999999999
Q ss_pred ccCCCC
Q psy13788 1028 GNFDFN 1033 (1034)
Q Consensus 1028 Gv~Dfs 1033 (1034)
|| |+.
T Consensus 445 GI-DiP 449 (1010)
T 2xgj_A 445 GL-NMP 449 (1010)
T ss_dssp ST-TCC
T ss_pred cC-CCC
Confidence 99 984
No 17
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.5e-32 Score=346.92 Aligned_cols=306 Identities=24% Similarity=0.401 Sum_probs=232.1
Q ss_pred cccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhh
Q psy13788 692 SLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771 (1034)
Q Consensus 692 ~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~ 771 (1034)
..|+|+ |+|+|.++++.++ .+++++++||||||||++|++++...+.. +.+++|++|+++|+.|+++++.+.+.
T Consensus 34 ~~~~f~-l~~~Q~~aI~~il-~g~~vlv~apTGsGKTlv~~~~i~~~~~~--g~~vlvl~PtraLa~Q~~~~l~~~~~-- 107 (997)
T 4a4z_A 34 RSWPFE-LDTFQKEAVYHLE-QGDSVFVAAHTSAGKTVVAEYAIAMAHRN--MTKTIYTSPIKALSNQKFRDFKETFD-- 107 (997)
T ss_dssp CCCSSC-CCHHHHHHHHHHH-TTCEEEEECCTTSCSHHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHTTC---
T ss_pred HhCCCC-CCHHHHHHHHHHH-cCCCEEEEECCCCcHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHcC--
Confidence 446676 9999999999998 78999999999999999999999887654 78999999999999999999887553
Q ss_pred cCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhh
Q psy13788 772 LKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISS 850 (1034)
Q Consensus 772 ~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~ 850 (1034)
+.++..++|+.... ..++|+|+||+++..++. .....+.++++||+||||++.+ +++..++.++..
T Consensus 108 -~~~v~~l~G~~~~~----~~~~IlV~Tpe~L~~~l~--~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~------ 174 (997)
T 4a4z_A 108 -DVNIGLITGDVQIN----PDANCLIMTTEILRSMLY--RGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM------ 174 (997)
T ss_dssp --CCEEEECSSCEEC----TTSSEEEEEHHHHHHHHH--HTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH------
T ss_pred -CCeEEEEeCCCccC----CCCCEEEECHHHHHHHHH--hCchhhcCCCEEEEECcccccccchHHHHHHHHHh------
Confidence 57899999987544 368999999999977765 3445678999999999999988 788888887743
Q ss_pred ccCCCeEEEEEccCCCCHHHHHhHhccc-CCceeecCCCCcccccEEEEecCCC-------C-CCch-------------
Q psy13788 851 YTKRNVRLVGLSTALANAKDLATWLNIT-KQGMYNFRPSVRPVPLEVHISGFPG-------K-QYCP------------- 908 (1034)
Q Consensus 851 ~~~~~~~iv~lSATl~~~~~l~~~l~~~-~~~~~~~~~~~r~~~l~~~~~~~~~-------~-~~~~------------- 908 (1034)
.+.++++|++|||++|..++++|++.. ...++.+....+++|++.++..... . .+..
T Consensus 175 -l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (997)
T 4a4z_A 175 -LPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGE 253 (997)
T ss_dssp -SCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--
T ss_pred -cccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcc
Confidence 456899999999999999999999853 3567777888889888866532100 0 0000
Q ss_pred ---------------------------h--------------------------------------hhhccHHHHHHHHh
Q psy13788 909 ---------------------------R--------------------------------------MAKMNKPIYTAIKQ 923 (1034)
Q Consensus 909 ---------------------------~--------------------------------------~~~~~~~~~~~l~~ 923 (1034)
+ .......+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~ 333 (997)
T 4a4z_A 254 SAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK 333 (997)
T ss_dssp ---------------------------------------------------------------CCCCTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHh
Confidence 0 00001123333333
Q ss_pred hCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChH---HHH----HHHhhcCC--------HHHHHHhhhch
Q psy13788 924 HSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDA---EMD----NIVDNIKD--------SNLKLTIAFGI 988 (1034)
Q Consensus 924 ~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~---~~~----~~~~~i~d--------~~l~~~l~~gv 988 (1034)
. ...++||||+|++.|+.++..|.... + ...+ .+. .....+.+ ..+..++..||
T Consensus 334 ~-~~~~~IVF~~sr~~~e~la~~L~~~~--------~--~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 334 R-ELLPMVVFVFSKKRCEEYADWLEGIN--------F--CNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp T-TCCSEEEECSCHHHHHHHHHTTTTCC--------C--CCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTE
T ss_pred C-CCCCEEEEECCHHHHHHHHHHHhcCC--------C--CCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCe
Confidence 3 45699999999999999888764311 0 0111 111 11222221 24677888899
Q ss_pred hhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 989 GFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 989 ~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++|||+|++.+|+.+++ . |++|.++|||||+++++|| |+.
T Consensus 403 ~~~H~gl~~~~R~~v~~--~--F~~G~~kVLvAT~~~a~GI-DiP 442 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEI--L--FSKGFIKVLFATETFAMGL-NLP 442 (997)
T ss_dssp EEECTTSCHHHHHHHHH--H--HHTTCCSEEEECTHHHHSC-CCC
T ss_pred eeecCCCCHHHHHHHHH--H--HHCCCCcEEEEchHhhCCC-CCC
Confidence 99999999999999999 8 9999999999999999999 985
No 18
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=6.4e-32 Score=314.04 Aligned_cols=297 Identities=12% Similarity=0.109 Sum_probs=208.9
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcC-CCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCc
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHT-DNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPL 753 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~-~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt 753 (1034)
++++....++.. ++|..|+|+|.++++.++.. +++++++||||+|||++|++|++..+... ++.++||++|+
T Consensus 31 ~l~~~l~~~l~~------~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 104 (412)
T 3fht_A 31 RLKPQLLQGVYA------MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 104 (412)
T ss_dssp TCCHHHHHHHHH------TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCHHHHHHHHH------cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCC
Confidence 455554555543 35667999999999999843 48999999999999999999999887653 35699999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-
Q psy13788 754 KALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832 (1034)
Q Consensus 754 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~- 832 (1034)
++|+.|+.+.+.+......+..+....|+..........++|+|+||+++..++.. .....+.+++++|+||||++.+
T Consensus 105 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~~iViDEah~~~~~ 183 (412)
T 3fht_A 105 YELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSK-LKFIDPKKIKVFVLDEADVMIAT 183 (412)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTT-SCSSCGGGCCEEEEETHHHHHST
T ss_pred HHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHh-cCCcChhhCcEEEEeCHHHHhhc
Confidence 99999999888765444346788888887666555556789999999999877753 2344568899999999999865
Q ss_pred -CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCC-CcccccEEEEecCCCCCCchh
Q psy13788 833 -DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPS-VRPVPLEVHISGFPGKQYCPR 909 (1034)
Q Consensus 833 -~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~-~r~~~l~~~~~~~~~~~~~~~ 909 (1034)
.+...+..+. ...+.+.|++++|||+++. ..+....... ...+..... .....+........ .
T Consensus 184 ~~~~~~~~~~~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~ 249 (412)
T 3fht_A 184 QGHQDQSIRIQ-------RMLPRNCQMLLFSATFEDSVWKFAQKVVPD-PNVIKLKREEETLDTIKQYYVLCS------S 249 (412)
T ss_dssp TTTHHHHHHHH-------HTSCTTCEEEEEESCCCHHHHHHHHHHSSS-CEEECCCGGGSSCTTEEEEEEECS------S
T ss_pred CCcHHHHHHHH-------hhCCCCceEEEEEeecCHHHHHHHHHhcCC-CeEEeeccccccccCceEEEEEcC------C
Confidence 3443333332 3456788999999999873 2333322211 111211111 11112222221111 1
Q ss_pred hhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchh
Q psy13788 910 MAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIG 989 (1034)
Q Consensus 910 ~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~ 989 (1034)
.......+...+... ..+++||||++++.|+.++..|... +.++.
T Consensus 250 ~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~----------------------------------~~~~~ 294 (412)
T 3fht_A 250 RDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKE----------------------------------GHQVA 294 (412)
T ss_dssp HHHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHT----------------------------------TCCCE
T ss_pred hHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhC----------------------------------CCeEE
Confidence 111122233333333 4569999999999999998887653 22388
Q ss_pred hhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 990 FHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 990 ~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
.+||+|+.++|..+++ . |++|+.+|||||+++++|+ |+.
T Consensus 295 ~~~~~~~~~~r~~~~~--~--f~~g~~~vlv~T~~~~~Gi-dip 333 (412)
T 3fht_A 295 LLSGEMMVEQRAAVIE--R--FREGKEKVLVTTNVCARGI-DVE 333 (412)
T ss_dssp EECTTSCHHHHHHHHH--H--HHTTSCSEEEECGGGTSSC-CCT
T ss_pred EecCCCCHHHHHHHHH--H--HHCCCCcEEEEcCccccCC-Ccc
Confidence 9999999999999988 7 9999999999999999999 985
No 19
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.5e-32 Score=325.47 Aligned_cols=283 Identities=20% Similarity=0.284 Sum_probs=211.6
Q ss_pred ccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHh
Q psy13788 689 QYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKF 768 (1034)
Q Consensus 689 ~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~ 768 (1034)
.+...|||..|+|+|.++++.++ .++|+++.+|||+|||++|++|++.. .+++|||+|+++|+.|+++.+.+
T Consensus 35 ~L~~~fg~~~~rp~Q~~~i~~il-~g~d~lv~~pTGsGKTl~~~lpal~~-----~g~~lVisP~~~L~~q~~~~l~~-- 106 (591)
T 2v1x_A 35 ILQNVFKLEKFRPLQLETINVTM-AGKEVFLVMPTGGGKSLCYQLPALCS-----DGFTLVICPLISLMEDQLMVLKQ-- 106 (591)
T ss_dssp HHHHTSCCCSCCTTHHHHHHHHH-TTCCEEEECCTTSCTTHHHHHHHHTS-----SSEEEEECSCHHHHHHHHHHHHH--
T ss_pred HHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEEECCCChHHHHHHHHHHHc-----CCcEEEEeCHHHHHHHHHHHHHh--
Confidence 34556889999999999999998 78999999999999999999999753 67999999999999999998875
Q ss_pred hhhcCCeEEEEcCCCCcccc---------ccCCCcEEEECHhhHH---HHHhccccccccCcccEEEEecccccCC---C
Q psy13788 769 EARLKKKVVELTGDVTPDIQ---------AISSASVIVTTPEKWD---GVSRSWQNRNYVQSVALIIIDEIHLLGE---D 833 (1034)
Q Consensus 769 ~~~~~~~v~~~~g~~~~~~~---------~~~~~~IiV~Tpe~l~---~l~~~~~~~~~l~~l~~lViDEaH~l~~---~ 833 (1034)
.|+++..++|+...... ....++|+|+||+++. .+.........+.+++++|+||||++.+ +
T Consensus 107 ---~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~d 183 (591)
T 2v1x_A 107 ---LGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHD 183 (591)
T ss_dssp ---HTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTT
T ss_pred ---cCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccc
Confidence 47889999988765432 1347899999999884 3333323334467899999999999975 3
Q ss_pred ChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH--HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhh
Q psy13788 834 RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA--KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMA 911 (1034)
Q Consensus 834 ~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~--~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~ 911 (1034)
|.+.+..+ ..+.. ..++.+++++|||+++. .++..+++......+. ......++...+...+. ...
T Consensus 184 fr~~~~~l----~~l~~-~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~--~~~~r~nl~~~v~~~~~-----~~~ 251 (591)
T 2v1x_A 184 FRPDYKAL----GILKR-QFPNASLIGLTATATNHVLTDAQKILCIEKCFTFT--ASFNRPNLYYEVRQKPS-----NTE 251 (591)
T ss_dssp CCGGGGGG----GHHHH-HCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE--CCCCCTTEEEEEEECCS-----SHH
T ss_pred cHHHHHHH----HHHHH-hCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe--cCCCCcccEEEEEeCCC-----cHH
Confidence 66666542 11112 23468999999999873 6788888876543332 22222334333332111 112
Q ss_pred hccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhh
Q psy13788 912 KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFH 991 (1034)
Q Consensus 912 ~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~ 991 (1034)
.....+.+.+.....+.++||||+|++.|+.++..|... +.++..+
T Consensus 252 ~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~----------------------------------g~~~~~~ 297 (591)
T 2v1x_A 252 DFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL----------------------------------GIHAGAY 297 (591)
T ss_dssp HHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT----------------------------------TCCEEEE
T ss_pred HHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC----------------------------------CCCEEEe
Confidence 223345555555446789999999999999999888652 2237899
Q ss_pred cCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 992 HAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 992 h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
||+|++++|..+++ . |++|+++|||||+++++|| |+.
T Consensus 298 h~~l~~~~R~~~~~--~--F~~g~~~VlVAT~a~~~GI-D~p 334 (591)
T 2v1x_A 298 HANLEPEDKTTVHR--K--WSANEIQVVVATVAFGMGI-DKP 334 (591)
T ss_dssp CTTSCHHHHHHHHH--H--HHTTSSSEEEECTTSCTTC-CCS
T ss_pred cCCCCHHHHHHHHH--H--HHcCCCeEEEEechhhcCC-Ccc
Confidence 99999999999988 7 9999999999999999999 985
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.98 E-value=4.3e-32 Score=315.32 Aligned_cols=293 Identities=13% Similarity=0.166 Sum_probs=209.1
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh-CCCCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-CPEAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~-~~~~~~lvi~Pt~ 754 (1034)
++++....++.. +||..|+|+|.++++.++ .++++++++|||+|||++|++|+++.+.. .++.++||++|++
T Consensus 43 ~l~~~l~~~l~~------~g~~~~~~~Q~~ai~~i~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~ 115 (410)
T 2j0s_A 43 GLREDLLRGIYA------YGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTR 115 (410)
T ss_dssp CCCHHHHHHHHH------HTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHH------cCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcH
Confidence 454544444443 466779999999999998 78899999999999999999999987753 3578999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccC
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~ 831 (1034)
+|+.|+++.+.+ ++...++.+..+.|+....... ..+++|+|+||+++..++.. ....+.+++++|+||||++.
T Consensus 116 ~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~--~~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 116 ELAVQIQKGLLA-LGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--RSLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp HHHHHHHHHHHH-HTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHT
T ss_pred HHHHHHHHHHHH-HhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh--CCccHhheeEEEEccHHHHH
Confidence 999999999985 5555788899998887654322 24689999999999877763 34556889999999999987
Q ss_pred C-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcc--cCCceeecC-CCCcccccEEEEecCCCCCCc
Q psy13788 832 E-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNI--TKQGMYNFR-PSVRPVPLEVHISGFPGKQYC 907 (1034)
Q Consensus 832 ~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~--~~~~~~~~~-~~~r~~~l~~~~~~~~~~~~~ 907 (1034)
+ ++...+..++ ...+...+++++|||+++. +.++... .....+... .......+...+......
T Consensus 193 ~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 260 (410)
T 2j0s_A 193 NKGFKEQIYDVY-------RYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE--- 260 (410)
T ss_dssp STTTHHHHHHHH-------TTSCTTCEEEEEESCCCHH--HHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST---
T ss_pred hhhhHHHHHHHH-------HhCccCceEEEEEcCCCHH--HHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH---
Confidence 6 5555554443 3456788999999999752 2222211 111111111 111111222222211111
Q ss_pred hhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhc
Q psy13788 908 PRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFG 987 (1034)
Q Consensus 908 ~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~g 987 (1034)
......+.+.+... ..+++||||++++.|+.++..|... +.+
T Consensus 261 ---~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~----------------------------------~~~ 302 (410)
T 2j0s_A 261 ---EWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREA----------------------------------NFT 302 (410)
T ss_dssp ---THHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHT----------------------------------TCC
T ss_pred ---HhHHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhC----------------------------------CCc
Confidence 11112233344433 3468999999999999988877552 223
Q ss_pred hhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 988 IGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 988 v~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+..+||++++++|+.+++ . |++|+.+|||||+++++|+ |+.
T Consensus 303 ~~~~h~~~~~~~r~~~~~--~--f~~g~~~vlv~T~~~~~Gi-di~ 343 (410)
T 2j0s_A 303 VSSMHGDMPQKERESIMK--E--FRSGASRVLISTDVWARGL-DVP 343 (410)
T ss_dssp CEEECTTSCHHHHHHHHH--H--HHHTSSCEEEECGGGSSSC-CCT
T ss_pred eEEeeCCCCHHHHHHHHH--H--HHCCCCCEEEECChhhCcC-Ccc
Confidence 789999999999999988 7 9999999999999999999 985
No 21
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.98 E-value=1e-32 Score=327.05 Aligned_cols=285 Identities=12% Similarity=0.119 Sum_probs=133.8
Q ss_pred cccCCCChhHHHHHHHHhcC-CCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHHHhhhh
Q psy13788 694 YKFSHFNPIQTQIFHCLYHT-DNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLKALVKERVADWKVKFEAR 771 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~-~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~ 771 (1034)
++|..|+|+|.++++.++.. +++++++||||||||++|++|++..+... .++++||++|+++|+.|+++.+.+.....
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 189 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFY 189 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhC
Confidence 46777999999999999843 48999999999999999999999887653 34599999999999999988887544433
Q ss_pred cCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC--CChhHHHHHHHHHHHhh
Q psy13788 772 LKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE--DRGPVLEVIVSRVNFIS 849 (1034)
Q Consensus 772 ~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~--~~~~~~~~il~rl~~l~ 849 (1034)
.+..+....++..........++|+|+||+++..++.+ .....+.++++||+||||++.+ .+...+.. +.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~-------i~ 261 (479)
T 3fmp_B 190 PELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSK-LKFIDPKKIKVFVLDEADVMIATQGHQDQSIR-------IQ 261 (479)
T ss_dssp TTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTT-SCCCCGGGCCEEEECCHHHHHTSTTHHHHHHH-------HH
T ss_pred CCceEEEEeCCccccccccCCCCEEEECchHHHHHHHh-cCCcCcccCCEEEEECHHHHhhcCCcHHHHHH-------HH
Confidence 46777777777665544455789999999999887754 2344568999999999999875 22222222 22
Q ss_pred hccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCC-cccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCC
Q psy13788 850 SYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSV-RPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPE 927 (1034)
Q Consensus 850 ~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~-r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 927 (1034)
...+.+.|++++|||+++. ..++...- .....+...... ....+...+.. +.........+...+. ....
T Consensus 262 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~-~~~~ 333 (479)
T 3fmp_B 262 RMLPRNCQMLLFSATFEDSVWKFAQKVV-PDPNVIKLKREEETLDTIKQYYVL------CSSRDEKFQALCNLYG-AITI 333 (479)
T ss_dssp TTSCTTSEEEEEESCCCHHHHHHHHHHS-SSEEEEEEC------------------------------------------
T ss_pred hhCCccceEEEEeCCCCHHHHHHHHHHc-CCCeEEeccccccCcCCceEEEEE------eCCHHHHHHHHHHHHh-hccC
Confidence 4456789999999999873 33333321 111112111111 01111111110 0000111111122222 2245
Q ss_pred CCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccc
Q psy13788 928 KPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPK 1007 (1034)
Q Consensus 928 ~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~ 1007 (1034)
.++||||++++.|+.++..|... +.++..+||+|++.+|..+++
T Consensus 334 ~~~lvF~~s~~~~~~l~~~L~~~----------------------------------~~~v~~lh~~~~~~~R~~~~~-- 377 (479)
T 3fmp_B 334 AQAMIFCHTRKTASWLAAELSKE----------------------------------GHQVALLSGEMMVEQRAAVIE-- 377 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEeCcHHHHHHHHHHHHhC----------------------------------CccEEEecCCCCHHHHHHHHH--
Confidence 68999999999999888877542 234889999999999999988
Q ss_pred hhHhhcCCceEEEechhhhhccCCCC
Q psy13788 1008 LAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1008 l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
. |++|+++|||||+++++|+ ||.
T Consensus 378 ~--f~~g~~~iLv~T~~~~~Gl-Dip 400 (479)
T 3fmp_B 378 R--FREGKEKVLVTTNVCARGI-DVE 400 (479)
T ss_dssp --------------------------
T ss_pred H--HHcCCCcEEEEccccccCC-ccc
Confidence 7 9999999999999999999 984
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.98 E-value=1.6e-31 Score=308.59 Aligned_cols=295 Identities=17% Similarity=0.190 Sum_probs=207.8
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcC-CCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCc
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHT-DNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPL 753 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~-~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt 753 (1034)
++++....++... +|..|+|+|.++++.++++ +++++++||||+|||++|++|++..+... .+.++||++|+
T Consensus 11 ~l~~~l~~~l~~~------~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 84 (395)
T 3pey_A 11 GLAPELLKGIYAM------KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS 84 (395)
T ss_dssp CCCHHHHHHHHHT------TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred CCCHHHHHHHHHC------CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCC
Confidence 5556555555543 4666999999999999843 28999999999999999999999887543 46799999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-
Q psy13788 754 KALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832 (1034)
Q Consensus 754 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~- 832 (1034)
++|+.|+++.+.+ +....++.+....|+..... ...+++|+|+||+++..++.+ ....+.+++++|+||||++.+
T Consensus 85 ~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~ 160 (395)
T 3pey_A 85 RELARQTLEVVQE-MGKFTKITSQLIVPDSFEKN-KQINAQVIVGTPGTVLDLMRR--KLMQLQKIKIFVLDEADNMLDQ 160 (395)
T ss_dssp HHHHHHHHHHHHH-HTTTSCCCEEEESTTSSCTT-SCBCCSEEEECHHHHHHHHHT--TCBCCTTCCEEEEETHHHHHHS
T ss_pred HHHHHHHHHHHHH-HhcccCeeEEEEecCchhhh-ccCCCCEEEEcHHHHHHHHHc--CCcccccCCEEEEEChhhhcCc
Confidence 9999999998885 44446778888877654332 234789999999999877763 445578899999999999875
Q ss_pred -CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhh
Q psy13788 833 -DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRM 910 (1034)
Q Consensus 833 -~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~ 910 (1034)
.+...+..+ ....+.+.+++++|||+++. ..+..+.......+...........+........ ..
T Consensus 161 ~~~~~~~~~~-------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 227 (395)
T 3pey_A 161 QGLGDQCIRV-------KRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCK------NE 227 (395)
T ss_dssp TTHHHHHHHH-------HHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECS------SH
T ss_pred cccHHHHHHH-------HHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcC------ch
Confidence 233222222 23456778999999999873 4444443322211111111111112222221111 01
Q ss_pred hhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhh
Q psy13788 911 AKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGF 990 (1034)
Q Consensus 911 ~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~ 990 (1034)
.. .......+.....++++||||++++.|+.++..|... +..+..
T Consensus 228 ~~-~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----------------------------------~~~~~~ 272 (395)
T 3pey_A 228 AD-KFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE----------------------------------GHEVSI 272 (395)
T ss_dssp HH-HHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT----------------------------------TCCCEE
T ss_pred HH-HHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc----------------------------------CCcEEE
Confidence 11 1122233333345679999999999999988877542 123789
Q ss_pred hcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 991 HHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 991 ~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+||+|+.++|+.+++ . |++|+.+|||||+++++|+ |+.
T Consensus 273 ~~~~~~~~~r~~~~~--~--f~~g~~~vlv~T~~~~~Gi-dip 310 (395)
T 3pey_A 273 LHGDLQTQERDRLID--D--FREGRSKVLITTNVLARGI-DIP 310 (395)
T ss_dssp ECTTSCHHHHHHHHH--H--HHTTSCCEEEECGGGSSSC-CCT
T ss_pred eCCCCCHHHHHHHHH--H--HHCCCCCEEEECChhhcCC-Ccc
Confidence 999999999999988 7 9999999999999999999 985
No 23
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.98 E-value=1.4e-31 Score=308.81 Aligned_cols=293 Identities=15% Similarity=0.152 Sum_probs=210.1
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~ 754 (1034)
++++...++|.. ++|..|+|+|.++++.++ .++++++.+|||+|||++|++|++..+... .+.++||++|++
T Consensus 14 ~l~~~l~~~l~~------~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 14 LLKPELLRAIVD------CGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp CCCHHHHHHHHH------HSCCSCCHHHHHHHHHHT-TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCCHHHHHHHHH------CCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 555655555554 356679999999999998 688999999999999999999999887553 356999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc----cCCCcEEEECHhhHHHHHhccccccccCcccEEEEeccccc
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA----ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~----~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l 830 (1034)
+|+.|+.+.+.+......++++..+.|+....... ...++|+|+||+++..++.. ....+.+++++|+||||++
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~vViDEaH~~ 164 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKM 164 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCSEEEECSHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCccccccCEEEEeCHHHH
Confidence 99999999888654443378899999987644322 23579999999999877763 3445789999999999999
Q ss_pred CCC--ChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HH-HHhHhcccCCceeecCCCC--cccccEEEEecCCCC
Q psy13788 831 GED--RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KD-LATWLNITKQGMYNFRPSV--RPVPLEVHISGFPGK 904 (1034)
Q Consensus 831 ~~~--~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~-l~~~l~~~~~~~~~~~~~~--r~~~l~~~~~~~~~~ 904 (1034)
.+. +...+..+ ....+...+++++|||+++. .. +..+++.. ..+...... ....+.........
T Consensus 165 ~~~~~~~~~~~~~-------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~- 234 (391)
T 1xti_A 165 LEQLDMRRDVQEI-------FRMTPHEKQVMMFSATLSKEIRPVCRKFMQDP--MEIFVDDETKLTLHGLQQYYVKLKD- 234 (391)
T ss_dssp TSSHHHHHHHHHH-------HHTSCSSSEEEEEESSCCSTHHHHHHHHCSSC--EEEECCCCCCCCCTTCEEEEEECCG-
T ss_pred hhccchHHHHHHH-------HhhCCCCceEEEEEeeCCHHHHHHHHHHcCCC--eEEEecCccccCcccceEEEEEcCc-
Confidence 762 22222222 23455688999999999873 33 33444321 112222111 11222222221111
Q ss_pred CCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHh
Q psy13788 905 QYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTI 984 (1034)
Q Consensus 905 ~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l 984 (1034)
......+.+.+... .++++||||++++.|+.++..|...
T Consensus 235 ------~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~---------------------------------- 273 (391)
T 1xti_A 235 ------NEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQ---------------------------------- 273 (391)
T ss_dssp ------GGHHHHHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHT----------------------------------
T ss_pred ------hhHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhC----------------------------------
Confidence 11122344444443 5679999999999999998877653
Q ss_pred hhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 985 AFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 985 ~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+..+..+||+++.++|+.+++ . |++|+.+|||||+++++|+ |+.
T Consensus 274 ~~~~~~~~~~~~~~~r~~~~~--~--f~~~~~~vlv~T~~~~~Gi-di~ 317 (391)
T 1xti_A 274 NFPAIAIHRGMPQEERLSRYQ--Q--FKDFQRRILVATNLFGRGM-DIE 317 (391)
T ss_dssp TCCEEEECTTSCHHHHHHHHH--H--HHTTCCSEEEESCCCSSCB-CCT
T ss_pred CCcEEEEeCCCCHHHHHHHHH--H--HhcCCCcEEEECChhhcCC-Ccc
Confidence 123788999999999999988 7 9999999999999999999 985
No 24
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=2.9e-31 Score=307.26 Aligned_cols=292 Identities=15% Similarity=0.162 Sum_probs=208.8
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~ 754 (1034)
++++...+++... ||.+|+|+|.++++.++ .++++++.+|||+|||++|++|++..+... .+.+++|++|++
T Consensus 27 ~l~~~l~~~l~~~------g~~~~~~~Q~~~i~~i~-~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 99 (400)
T 1s2m_A 27 YLKRELLMGIFEA------GFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTR 99 (400)
T ss_dssp CCCHHHHHHHHHT------TCCSCCHHHHHHHHHHH-HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHC------CCCCCCHHHHHHHHHHh-cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCH
Confidence 5555555555543 56669999999999998 678999999999999999999999887543 456999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccc---ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccC
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQ---AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~ 831 (1034)
+|+.|+++.+.+.+. ..++++..+.|+...... ....++|+|+||+++..++.. ....+.+++++|+||||++.
T Consensus 100 ~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~ 176 (400)
T 1s2m_A 100 ELALQTSQVVRTLGK-HCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKML 176 (400)
T ss_dssp HHHHHHHHHHHHHTT-TTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHS
T ss_pred HHHHHHHHHHHHHhc-ccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh--CCcccccCCEEEEeCchHhh
Confidence 999999998886544 368889989888765432 235789999999999777653 34557889999999999987
Q ss_pred C-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH--HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCch
Q psy13788 832 E-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA--KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCP 908 (1034)
Q Consensus 832 ~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~--~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~ 908 (1034)
+ .++..+..++ ...+...+++++|||++.. ..+..++... .............+.........
T Consensus 177 ~~~~~~~~~~i~-------~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----- 242 (400)
T 1s2m_A 177 SRDFKTIIEQIL-------SFLPPTHQSLLFSATFPLTVKEFMVKHLHKP--YEINLMEELTLKGITQYYAFVEE----- 242 (400)
T ss_dssp SHHHHHHHHHHH-------TTSCSSCEEEEEESCCCHHHHHHHHHHCSSC--EEESCCSSCBCTTEEEEEEECCG-----
T ss_pred hhchHHHHHHHH-------HhCCcCceEEEEEecCCHHHHHHHHHHcCCC--eEEEeccccccCCceeEEEEech-----
Confidence 6 3333333332 4455678999999999752 2233333221 11111111112222222221111
Q ss_pred hhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhch
Q psy13788 909 RMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGI 988 (1034)
Q Consensus 909 ~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv 988 (1034)
......+...+.. ...+++||||++++.++.++..|... +.++
T Consensus 243 --~~k~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~----------------------------------~~~~ 285 (400)
T 1s2m_A 243 --RQKLHCLNTLFSK-LQINQAIIFCNSTNRVELLAKKITDL----------------------------------GYSC 285 (400)
T ss_dssp --GGHHHHHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHHH----------------------------------TCCE
T ss_pred --hhHHHHHHHHHhh-cCCCcEEEEEecHHHHHHHHHHHHhc----------------------------------CCCe
Confidence 1111122333333 35679999999999999988877653 2237
Q ss_pred hhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 989 GFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 989 ~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
..+||+|+.++|+.+++ . |++|+.+|||||+++++|+ |+.
T Consensus 286 ~~~~~~~~~~~r~~~~~--~--f~~g~~~vLv~T~~~~~Gi-dip 325 (400)
T 1s2m_A 286 YYSHARMKQQERNKVFH--E--FRQGKVRTLVCSDLLTRGI-DIQ 325 (400)
T ss_dssp EEECTTSCHHHHHHHHH--H--HHTTSSSEEEESSCSSSSC-CCT
T ss_pred EEecCCCCHHHHHHHHH--H--HhcCCCcEEEEcCccccCC-Ccc
Confidence 89999999999999988 7 9999999999999999999 985
No 25
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=311.80 Aligned_cols=283 Identities=13% Similarity=0.153 Sum_probs=195.4
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
++|..|+|+|.++++.++ .++++++.+|||+|||++|++|+++.+... .+.+++|++|+++|+.|+.+.+.+ +....
T Consensus 58 ~~~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~ 135 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA-LGDYM 135 (414)
T ss_dssp TTCCSCCHHHHHHHHHHH-TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HGGGS
T ss_pred cCCCCCCHHHHHHhHHHh-CCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHH-Hhccc
Confidence 467779999999999998 788999999999999999999999887653 468899999999999999998886 44447
Q ss_pred CCeEEEEcCCCCccccc----cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHH
Q psy13788 773 KKKVVELTGDVTPDIQA----ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNF 847 (1034)
Q Consensus 773 ~~~v~~~~g~~~~~~~~----~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~ 847 (1034)
+..+..+.|+....... ...++|+|+||+++..++.. ....+.++++||+||||++.+ ++...+..++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~----- 208 (414)
T 3eiq_A 136 GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIF----- 208 (414)
T ss_dssp CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH--TSSCSTTCCEEEECSHHHHHHTTTHHHHHHHH-----
T ss_pred CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccCcEEEEECHHHhhccCcHHHHHHHH-----
Confidence 88888888876644322 25789999999999777763 344567899999999999865 5665555544
Q ss_pred hhhccCCCeEEEEEccCCCCH-HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCC
Q psy13788 848 ISSYTKRNVRLVGLSTALANA-KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSP 926 (1034)
Q Consensus 848 l~~~~~~~~~iv~lSATl~~~-~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 926 (1034)
...+.+.|++++|||+++. ..+..........+...........+........... .....+...+.. ..
T Consensus 209 --~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~-~~ 279 (414)
T 3eiq_A 209 --QKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREE------WKLDTLCDLYET-LT 279 (414)
T ss_dssp --TTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSST------THHHHHHHHHHS-SC
T ss_pred --HhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHH------hHHHHHHHHHHh-CC
Confidence 3455788999999999752 2222222111111111111111112222222111111 111223333333 35
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhccc
Q psy13788 927 EKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMP 1006 (1034)
Q Consensus 927 ~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~ 1006 (1034)
.+++||||++++.|+.++..|... +.++..+||+|++++|..+++
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----------------------------------~~~~~~~h~~~~~~~r~~~~~- 324 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----------------------------------DFTVSAMHGDMDQKERDVIMR- 324 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----------------------------------TCCCEEC---CHHHHHHHHHH-
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----------------------------------CCeEEEecCCCCHHHHHHHHH-
Confidence 679999999999999888777542 224789999999999999988
Q ss_pred chhHhhcCCceEEEechhhhhccCCCC
Q psy13788 1007 KLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1007 ~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
. |++|+.+|||||+++++|+ |+.
T Consensus 325 -~--f~~g~~~vlv~T~~~~~Gi-dip 347 (414)
T 3eiq_A 325 -E--FRSGSSRVLITTDLLARGI-DVQ 347 (414)
T ss_dssp -H--HSCC---CEEECSSCC--C-CGG
T ss_pred -H--HHcCCCcEEEECCccccCC-Ccc
Confidence 7 9999999999999999999 973
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.2e-32 Score=322.90 Aligned_cols=282 Identities=14% Similarity=0.140 Sum_probs=181.0
Q ss_pred ccCCCChhHHHHHHHHhcC-CCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 695 KFSHFNPIQTQIFHCLYHT-DNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 695 ~~~~~~~~Q~~ai~~l~~~-~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
++..|+|+|.+|++.++++ +++++++||||||||++|++|++..+... ++.++||++|+++|+.|+++++.+.+.. .
T Consensus 138 g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~-~ 216 (508)
T 3fho_A 138 XXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY-T 216 (508)
T ss_dssp -CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTT-S
T ss_pred cccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCc-c
Confidence 4556999999999999843 48999999999999999999999887654 3569999999999999999999865543 4
Q ss_pred CCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC--CChhHHHHHHHHHHHhhh
Q psy13788 773 KKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE--DRGPVLEVIVSRVNFISS 850 (1034)
Q Consensus 773 ~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~--~~~~~~~~il~rl~~l~~ 850 (1034)
+..+....++..... ...+++|+|+||+++...+.. ....+.++++||+||||++.+ .+...+..+. .
T Consensus 217 ~~~~~~~~~~~~~~~-~~~~~~Ivv~T~~~l~~~l~~--~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~-------~ 286 (508)
T 3fho_A 217 EVKTAFGIKDSVPKG-AKIDAQIVIGTPGTVMDLMKR--RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIK-------H 286 (508)
T ss_dssp SCCEEC-----------CCCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEECCHHHHTTC--CHHHHHHHH-------H
T ss_pred CeeEEEEeCCccccc-ccCCCCEEEECHHHHHHHHHc--CCccccCCCEEEEechhhhcccCCcHHHHHHHH-------H
Confidence 555554444433222 233789999999999776653 344578899999999999976 3444444333 3
Q ss_pred ccCCCeEEEEEccCCCC-HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCC
Q psy13788 851 YTKRNVRLVGLSTALAN-AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKP 929 (1034)
Q Consensus 851 ~~~~~~~iv~lSATl~~-~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 929 (1034)
..+.+.|++++|||+++ ...+..++......+...........+........ ........+...+ .....++
T Consensus 287 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~k~~~l~~ll-~~~~~~~ 359 (508)
T 3fho_A 287 LLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQ------SEEHKYNVLVELY-GLLTIGQ 359 (508)
T ss_dssp HSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--------CHHHHHHHHHHH-C---CCC
T ss_pred hCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECC------chHHHHHHHHHHH-HhcCCCc
Confidence 34568899999999987 45555554433221111111111111111111110 0111111222222 3335679
Q ss_pred eEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchh
Q psy13788 930 VMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLA 1009 (1034)
Q Consensus 930 ~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~ 1009 (1034)
+||||++++.|+.++..|.+. +.++..+||+++..+|+.+++ .
T Consensus 360 ~LVF~~s~~~a~~l~~~L~~~----------------------------------~~~v~~~hg~~~~~~R~~il~--~- 402 (508)
T 3fho_A 360 SIIFCKKKDTAEEIARRMTAD----------------------------------GHTVACLTGNLEGAQRDAIMD--S- 402 (508)
T ss_dssp EEEBCSSTTTTTHHHHHHTTT----------------------------------TCCCCEEC-----CTTGGGTH--H-
T ss_pred EEEEECCHHHHHHHHHHHHhC----------------------------------CCcEEEEeCCCCHHHHHHHHH--H-
Confidence 999999999999888776431 234889999999999999988 7
Q ss_pred HhhcCCceEEEechhhhhccCCCC
Q psy13788 1010 ALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1010 ~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
|++|+.+|||||+++++|+ |+.
T Consensus 403 -f~~g~~~VLVaT~~l~~Gi-Dip 424 (508)
T 3fho_A 403 -FRVGTSKVLVTTNVIARGI-DVS 424 (508)
T ss_dssp -HHSSSCCCCEECC-----C-CCT
T ss_pred -HHCCCCeEEEeCChhhcCC-Ccc
Confidence 9999999999999999999 984
No 27
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=2.2e-31 Score=316.52 Aligned_cols=276 Identities=17% Similarity=0.236 Sum_probs=206.3
Q ss_pred ccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHh
Q psy13788 689 QYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKF 768 (1034)
Q Consensus 689 ~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~ 768 (1034)
.+.+.|||..|+|+|.++++.++ .++++++.||||+|||++|++|++.. .+++||++|+++|+.|+++.+.+
T Consensus 16 ~l~~~~g~~~~r~~Q~~~i~~il-~g~d~lv~apTGsGKTl~~~lp~l~~-----~g~~lvi~P~~aL~~q~~~~l~~-- 87 (523)
T 1oyw_A 16 VLQETFGYQQFRPGQEEIIDTVL-SGRDCLVVMPTGGGKSLCYQIPALLL-----NGLTVVVSPLISLMKDQVDQLQA-- 87 (523)
T ss_dssp HHHHTTCCSSCCTTHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHS-----SSEEEEECSCHHHHHHHHHHHHH--
T ss_pred HHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEECCCCcHHHHHHHHHHHHh-----CCCEEEECChHHHHHHHHHHHHH--
Confidence 34556889999999999999998 78899999999999999999998853 57899999999999999998875
Q ss_pred hhhcCCeEEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC---CChhHH
Q psy13788 769 EARLKKKVVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE---DRGPVL 838 (1034)
Q Consensus 769 ~~~~~~~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~---~~~~~~ 838 (1034)
.++.+..++|+....... ....+|+++||+++.... +.......+++++|+||||++.+ +|.+.+
T Consensus 88 ---~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~--~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~ 162 (523)
T 1oyw_A 88 ---NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDN--FLEHLAHWNPVLLAVDEAHCISQWGHDFRPEY 162 (523)
T ss_dssp ---TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTT--HHHHHTTSCEEEEEESSGGGGCTTSSCCCHHH
T ss_pred ---cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChH--HHHHHhhCCCCEEEEeCccccCcCCCccHHHH
Confidence 578888888876643321 246899999999983211 11122237889999999999975 366666
Q ss_pred HHHHHHHHHhhhccCCCeEEEEEccCCCCH--HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHH
Q psy13788 839 EVIVSRVNFISSYTKRNVRLVGLSTALANA--KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKP 916 (1034)
Q Consensus 839 ~~il~rl~~l~~~~~~~~~iv~lSATl~~~--~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 916 (1034)
..+. .+.... ++.+++++|||+++. .++.++++.....++.- ...++ .+...+... ......
T Consensus 163 ~~l~----~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~-~l~~~v~~~---------~~~~~~ 226 (523)
T 1oyw_A 163 AALG----QLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-SFDRP-NIRYMLMEK---------FKPLDQ 226 (523)
T ss_dssp HGGG----GHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC-CCCCT-TEEEEEEEC---------SSHHHH
T ss_pred HHHH----HHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC-CCCCC-ceEEEEEeC---------CCHHHH
Confidence 5432 222222 468899999999874 67888998766544432 22222 333333211 111233
Q ss_pred HHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCC
Q psy13788 917 IYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAE 996 (1034)
Q Consensus 917 ~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~ 996 (1034)
+.+.+... .++++||||+|+++|+.++..|... +..+..|||+|+
T Consensus 227 l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~----------------------------------g~~~~~~h~~l~ 271 (523)
T 1oyw_A 227 LMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSK----------------------------------GISAAAYHAGLE 271 (523)
T ss_dssp HHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHT----------------------------------TCCEEEECTTSC
T ss_pred HHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHC----------------------------------CCCEEEecCCCC
Confidence 45555544 5679999999999999999888653 223789999999
Q ss_pred HHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 997 AAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 997 ~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+++|+.+++ . |++|+++|||||+++++|+ |+.
T Consensus 272 ~~~R~~~~~--~--f~~g~~~vlVaT~a~~~Gi-D~p 303 (523)
T 1oyw_A 272 NNVRADVQE--K--FQRDDLQIVVATVAFGMGI-NKP 303 (523)
T ss_dssp HHHHHHHHH--H--HHTTSCSEEEECTTSCTTT-CCT
T ss_pred HHHHHHHHH--H--HHcCCCeEEEEechhhCCC-Ccc
Confidence 999999988 7 9999999999999999999 985
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=4e-31 Score=302.09 Aligned_cols=289 Identities=18% Similarity=0.218 Sum_probs=211.2
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKA 755 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~ 755 (1034)
++++....++.+. +|..|+|+|.++++.++++++++++.+|||+|||++|++|++..+...++.+++|++|+++
T Consensus 12 ~l~~~~~~~l~~~------g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~ 85 (367)
T 1hv8_A 12 NLSDNILNAIRNK------GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRE 85 (367)
T ss_dssp SCCHHHHHHHHHH------TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHH
T ss_pred CCCHHHHHHHHHc------CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHH
Confidence 5555555666554 4566999999999999855579999999999999999999999887767889999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccc--ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-
Q psy13788 756 LVKERVADWKVKFEARLKKKVVELTGDVTPDIQ--AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832 (1034)
Q Consensus 756 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~- 832 (1034)
|+.|+.+++.+.++. .+..+..+.|+...... ...+++|+|+||+++...+. .....+.+++++|+||||++.+
T Consensus 86 L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~--~~~~~~~~~~~iIiDEah~~~~~ 162 (367)
T 1hv8_A 86 LAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHIN--RGTLNLKNVKYFILDEADEMLNM 162 (367)
T ss_dssp HHHHHHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHH--TTCSCTTSCCEEEEETHHHHHTT
T ss_pred HHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHH--cCCcccccCCEEEEeCchHhhhh
Confidence 999999999876554 67888888887664322 23478999999999977766 3344578899999999999876
Q ss_pred CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH--HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhh
Q psy13788 833 DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA--KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRM 910 (1034)
Q Consensus 833 ~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~--~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~ 910 (1034)
.+...+..++ ...+...+++++|||+++. ..+..+++.. .... ......+.........
T Consensus 163 ~~~~~~~~~~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~------- 223 (367)
T 1hv8_A 163 GFIKDVEKIL-------NACNKDKRILLFSATMPREILNLAKKYMGDY--SFIK---AKINANIEQSYVEVNE------- 223 (367)
T ss_dssp TTHHHHHHHH-------HTSCSSCEEEEECSSCCHHHHHHHHHHCCSE--EEEE---CCSSSSSEEEEEECCG-------
T ss_pred chHHHHHHHH-------HhCCCCceEEEEeeccCHHHHHHHHHHcCCC--eEEE---ecCCCCceEEEEEeCh-------
Confidence 5554444443 3445788999999999763 3334444321 1111 1111122222221111
Q ss_pred hhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhh
Q psy13788 911 AKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGF 990 (1034)
Q Consensus 911 ~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~ 990 (1034)
......+.+.+. ..+.++||||++++.++.++..|... +.++..
T Consensus 224 ~~~~~~l~~~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~----------------------------------~~~~~~ 267 (367)
T 1hv8_A 224 NERFEALCRLLK--NKEFYGLVFCKTKRDTKELASMLRDI----------------------------------GFKAGA 267 (367)
T ss_dssp GGHHHHHHHHHC--STTCCEEEECSSHHHHHHHHHHHHHT----------------------------------TCCEEE
T ss_pred HHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHhc----------------------------------CCCeEE
Confidence 111222333333 35678999999999999988877542 223789
Q ss_pred hcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 991 HHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 991 ~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+||+++.++|+.+++ . |++|+.+|||||+++++|+ |+.
T Consensus 268 ~~~~~~~~~r~~~~~--~--f~~~~~~vlv~T~~~~~Gi-d~~ 305 (367)
T 1hv8_A 268 IHGDLSQSQREKVIR--L--FKQKKIRILIATDVMSRGI-DVN 305 (367)
T ss_dssp ECSSSCHHHHHHHHH--H--HHTTSSSEEEECTTHHHHC-CCS
T ss_pred eeCCCCHHHHHHHHH--H--HHcCCCeEEEECChhhcCC-Ccc
Confidence 999999999999988 7 9999999999999999999 984
No 29
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=2e-31 Score=307.85 Aligned_cols=294 Identities=15% Similarity=0.152 Sum_probs=142.4
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~ 754 (1034)
++++....++.. ++|.+|+|+|.++++.++ .++++++.+|||+|||++|++|++..+... .++++||++|++
T Consensus 27 ~l~~~l~~~l~~------~g~~~~~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 99 (394)
T 1fuu_A 27 ELDENLLRGVFG------YGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 99 (394)
T ss_dssp CCCHHHHHHHHH------HTCCSCCHHHHHHHHHHH-HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CCCHHHHHHHHH------cCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCH
Confidence 455555555543 456679999999999998 688999999999999999999999887653 467999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccc--ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQ--AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~ 832 (1034)
+|+.|+.+.+.+.+.. .++++..+.|+...... ...+++|+|+||+++...+.. ....+.+++++|+||||++.+
T Consensus 100 ~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 100 ELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLS 176 (394)
T ss_dssp HHHHHHHHHHHHHTTT-SCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-CCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEEChHHhhC
Confidence 9999999998865443 68889999988764332 234789999999999777653 345568899999999999865
Q ss_pred -CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH--HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchh
Q psy13788 833 -DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA--KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPR 909 (1034)
Q Consensus 833 -~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~--~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~ 909 (1034)
++...+..++. ..+...+++++|||+++. +....++... ..+........+..+..........
T Consensus 177 ~~~~~~~~~~~~-------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 243 (394)
T 1fuu_A 177 SGFKEQIYQIFT-------LLPPTTQVVLLSATMPNDVLEVTTKFMRNP-VRILVKKDELTLEGIKQFYVNVEEE----- 243 (394)
T ss_dssp TTCHHHHHHHHH-------HSCTTCEEEEECSSCCHHHHHHHHHHCCSC-EEEEECC-----------------------
T ss_pred CCcHHHHHHHHH-------hCCCCceEEEEEEecCHHHHHHHHHhcCCC-eEEEecCccccCCCceEEEEEcCch-----
Confidence 56665555543 345678999999999863 2233343321 1111111100111111111110000
Q ss_pred hhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchh
Q psy13788 910 MAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIG 989 (1034)
Q Consensus 910 ~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~ 989 (1034)
......+.+.+.. ...+++||||++++.++.++..|... +.++.
T Consensus 244 -~~~~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~----------------------------------~~~~~ 287 (394)
T 1fuu_A 244 -EYKYECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRND----------------------------------KFTVS 287 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -hhHHHHHHHHHhc-CCCCcEEEEECCHHHHHHHHHHHHHc----------------------------------CCeEE
Confidence 0011112222222 24568999999999999888776542 22378
Q ss_pred hhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 990 FHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 990 ~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
.+||+++.++|+.+++ . |++|+.+|||||+++++|+ |+.
T Consensus 288 ~~~~~~~~~~r~~~~~--~--f~~~~~~vlv~T~~~~~Gl-di~ 326 (394)
T 1fuu_A 288 AIYSDLPQQERDTIMK--E--FRSGSSRILISTDLLARGI-DVQ 326 (394)
T ss_dssp --------------------------------------------
T ss_pred EeeCCCCHHHHHHHHH--H--HHCCCCcEEEECChhhcCC-Ccc
Confidence 9999999999999988 7 9999999999999999999 984
No 30
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=9.1e-30 Score=287.30 Aligned_cols=267 Identities=18% Similarity=0.223 Sum_probs=198.4
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+||..|+|+|.++++.++ +++++++.+|||+|||++|++|++.. +.+++|++|+++|+.|+++.+.+. ....+
T Consensus 12 ~g~~~l~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~-~~~~~ 84 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLML-QGKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTRQVASHIRDI-GRYMD 84 (337)
T ss_dssp TTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHHHHHHHHHHH-TTTSC
T ss_pred cCCCCCCHHHHHHHHHHh-cCCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHHHHHHHHHHH-hhhcC
Confidence 567789999999999998 78899999999999999999998875 789999999999999999998854 44467
Q ss_pred CeEEEEcCCCCcccc--ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhh
Q psy13788 774 KKVVELTGDVTPDIQ--AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISS 850 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~--~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~ 850 (1034)
.++..+.|+...... ....++|+|+||+++..++.. ....+.+++++|+||||++.+ ++...+..++ .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~-------~ 155 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSK--GVIDLSSFEIVIIDEADLMFEMGFIDDIKIIL-------A 155 (337)
T ss_dssp CCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHT--TSCCGGGCSEEEEESHHHHHHTTCHHHHHHHH-------H
T ss_pred CcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHc--CCcchhhCcEEEEEChHHhhccccHHHHHHHH-------h
Confidence 889999987765432 245699999999999777653 344578899999999999875 5655555544 3
Q ss_pred ccCCCeEEEEEccCCCCH--HHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCC
Q psy13788 851 YTKRNVRLVGLSTALANA--KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEK 928 (1034)
Q Consensus 851 ~~~~~~~iv~lSATl~~~--~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 928 (1034)
..+...+++++|||+++. +.+..++.... .. ........+.......... .+.....+.. ..++
T Consensus 156 ~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~ 221 (337)
T 2z0m_A 156 QTSNRKITGLFSATIPEEIRKVVKDFITNYE--EI--EACIGLANVEHKFVHVKDD---------WRSKVQALRE-NKDK 221 (337)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHSCSCE--EE--ECSGGGGGEEEEEEECSSS---------SHHHHHHHHT-CCCS
T ss_pred hCCcccEEEEEeCcCCHHHHHHHHHhcCCce--ee--ecccccCCceEEEEEeChH---------HHHHHHHHHh-CCCC
Confidence 345678899999999863 34445543211 11 1111222233332222111 1222334433 4567
Q ss_pred CeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccch
Q psy13788 929 PVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKL 1008 (1034)
Q Consensus 929 ~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l 1008 (1034)
++||||++++.++.++..|. .+..+||+++..+|..+++ .
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~--------------------------------------~~~~~~~~~~~~~r~~~~~--~ 261 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD--------------------------------------NAIELRGDLPQSVRNRNID--A 261 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT--------------------------------------TEEEECTTSCHHHHHHHHH--H
T ss_pred cEEEEEcCHHHHHHHHHHhh--------------------------------------hhhhhcCCCCHHHHHHHHH--H
Confidence 99999999999987765442 1678999999999999877 7
Q ss_pred hHhhcCCceEEEechhhhhccCCCC
Q psy13788 1009 AALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1009 ~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
|++|+.+|||||+++++|+ |+.
T Consensus 262 --f~~~~~~vlv~T~~~~~Gi-d~~ 283 (337)
T 2z0m_A 262 --FREGEYDMLITTDVASRGL-DIP 283 (337)
T ss_dssp --HHTTSCSEEEECHHHHTTC-CCC
T ss_pred --HHcCCCcEEEEcCccccCC-Ccc
Confidence 9999999999999999999 985
No 31
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.96 E-value=3e-28 Score=294.62 Aligned_cols=163 Identities=21% Similarity=0.320 Sum_probs=130.6
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC---CCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCe
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---EAKVVYIAPLKALVKERVADWKVKFEARLKKK 775 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~---~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~ 775 (1034)
|+|+|.++++.++ .++++++++|||+|||++|++|+++.+...+ +.++||++|+++|+.|+.+.+.+.+.. .+++
T Consensus 5 ~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~ 82 (555)
T 3tbk_A 5 PRNYQLELALPAK-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER-LGYN 82 (555)
T ss_dssp CCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-TTCC
T ss_pred CcHHHHHHHHHHh-CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-CCcE
Confidence 9999999999998 7899999999999999999999999988766 789999999999999999999876654 6899
Q ss_pred EEEEcCCCCcccc---ccCCCcEEEECHhhHHHHHhcccccc-ccCcccEEEEecccccCCCChhHHHHHHHHHHHh--h
Q psy13788 776 VVELTGDVTPDIQ---AISSASVIVTTPEKWDGVSRSWQNRN-YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFI--S 849 (1034)
Q Consensus 776 v~~~~g~~~~~~~---~~~~~~IiV~Tpe~l~~l~~~~~~~~-~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l--~ 849 (1034)
+..++|+.....+ ...+++|+|+||+++..++.. ... .+.+++++|+||||++.+.. + +..++.+.... .
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~-~-~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN--GAIPSLSVFTLMIFDECHNTSKNH-P-YNQIMFRYLDHKLG 158 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHT--SSSCCGGGCSEEEETTGGGCSTTC-H-HHHHHHHHHHHHTS
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhc--CcccccccCCEEEEECccccCCcc-h-HHHHHHHHHHhhhc
Confidence 9999998865432 234689999999999877763 223 57889999999999998632 2 55554333211 1
Q ss_pred hccCCCeEEEEEccCCCC
Q psy13788 850 SYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 850 ~~~~~~~~iv~lSATl~~ 867 (1034)
.......+++++|||+++
T Consensus 159 ~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp SCCSCCCEEEEEESCCCC
T ss_pred cccCCCCeEEEEecCccc
Confidence 112356899999999965
No 32
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.96 E-value=3.2e-28 Score=294.51 Aligned_cols=164 Identities=24% Similarity=0.363 Sum_probs=126.2
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC---CCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---EAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~---~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
+|+|+|.++++.++ .++++++++|||+|||++|++|+++.+...+ +.++||++|+++|+.|+.+.+.+.+.. .++
T Consensus 7 ~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~ 84 (556)
T 4a2p_A 7 KARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QGY 84 (556)
T ss_dssp -CCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-GTC
T ss_pred CCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-cCc
Confidence 49999999999998 6889999999999999999999999988765 789999999999999999999876654 689
Q ss_pred eEEEEcCCCCcccc---ccCCCcEEEECHhhHHHHHhcccccc-ccCcccEEEEecccccCCCChhHHHHHHHHHHHh-h
Q psy13788 775 KVVELTGDVTPDIQ---AISSASVIVTTPEKWDGVSRSWQNRN-YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFI-S 849 (1034)
Q Consensus 775 ~v~~~~g~~~~~~~---~~~~~~IiV~Tpe~l~~l~~~~~~~~-~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l-~ 849 (1034)
++..++|+.....+ ...+++|+|+||+++..++.. ... .+.++++||+||||++.+.. + +..++.++... .
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~-~-~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH-P-YNVLMTRYLEQKF 160 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHS--SSCCCSTTCSEEEEETGGGCSTTS-H-HHHHHHHHHHHHH
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHh--CcccccccCCEEEEECCcccCCcc-h-HHHHHHHHHHhhh
Confidence 99999998755432 234689999999999877763 333 67889999999999998632 2 55544332211 1
Q ss_pred hccCCCeEEEEEccCCCC
Q psy13788 850 SYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 850 ~~~~~~~~iv~lSATl~~ 867 (1034)
....+..+++++|||++.
T Consensus 161 ~~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGV 178 (556)
T ss_dssp CC---CCEEEEEESCCCC
T ss_pred cccCCCCeEEEEeCCccc
Confidence 112456899999999954
No 33
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=1e-28 Score=287.13 Aligned_cols=271 Identities=13% Similarity=0.106 Sum_probs=190.0
Q ss_pred ccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q psy13788 691 ESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEA 770 (1034)
Q Consensus 691 ~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~ 770 (1034)
.+.++| +|+|+|.++++.++ .++|++++||||||||++|++|++... .+++++||++||++|+.|+++.+.+ +..
T Consensus 15 ~~~~~~-~~~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~-~~~ 89 (414)
T 3oiy_A 15 KKKFGK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQK-LAD 89 (414)
T ss_dssp HHHHSS-CCCHHHHHHHHHHT-TTCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHH-HCC
T ss_pred HHhcCC-CCCHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHH-Hcc
Confidence 444567 49999999999998 788999999999999999999988776 3478999999999999999999986 444
Q ss_pred hcCCeEEEEcCCCCcccc-----c--cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccC------------
Q psy13788 771 RLKKKVVELTGDVTPDIQ-----A--ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG------------ 831 (1034)
Q Consensus 771 ~~~~~v~~~~g~~~~~~~-----~--~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~------------ 831 (1034)
.++++..++|+.....+ . ...++|+|+||+++..++.. ..+.+++++|+||||++.
T Consensus 90 -~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 90 -EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp -SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred -CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChHhhhhccchhhhHHhh
Confidence 78899999998876221 1 12489999999999776652 345689999999999875
Q ss_pred CCChhH-HHHHHHHHHH--hhhccC--CCeEEEEEccC-CCCH---HHHHhHhcccCCceeecCCCCcccccEEEEecCC
Q psy13788 832 EDRGPV-LEVIVSRVNF--ISSYTK--RNVRLVGLSTA-LANA---KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFP 902 (1034)
Q Consensus 832 ~~~~~~-~~~il~rl~~--l~~~~~--~~~~iv~lSAT-l~~~---~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~ 902 (1034)
.++.+. +..++..+.. .....+ .+.|++++||| .++. .....+++..... ....+..+...+...
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~- 238 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRISS- 238 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC-----CCCCCCSEEEEEESS-
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc-----cccccccchheeecc-
Confidence 234444 4455543320 001111 67899999999 4432 2233344322111 111112233222211
Q ss_pred CCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHH
Q psy13788 903 GKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKL 982 (1034)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~ 982 (1034)
.....+.+.+... ++++||||++++.|+.++..|...
T Consensus 239 ---------~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------- 275 (414)
T 3oiy_A 239 ---------RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRF-------------------------------- 275 (414)
T ss_dssp ---------CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHT--------------------------------
T ss_pred ---------CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 1122344555553 478999999999999998887653
Q ss_pred Hhhhchh-hhcCCCCHHHHHHhcccchhHhhcCCceEEEe----chhhhhccCCCC
Q psy13788 983 TIAFGIG-FHHAAAEAAQSSALQMPKLAALSSKENQNVIN----RSTSANGNFDFN 1033 (1034)
Q Consensus 983 ~l~~gv~-~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVa----T~~l~~Gv~Dfs 1033 (1034)
+..+. .+||. +|+ ++ . |++|+++|||| |+++++|+ |+.
T Consensus 276 --~~~~~~~~h~~----~r~--~~--~--f~~g~~~vLvat~s~T~~~~~Gi-Dip 318 (414)
T 3oiy_A 276 --KFNVGETWSEF----EKN--FE--D--FKVGKINILIGVQAYYGKLTRGV-DLP 318 (414)
T ss_dssp --TCCEEESSSCH----HHH--HH--H--HHTTSCSEEEEECCTTCCCCCCC-CCT
T ss_pred --CCceehhhcCc----chH--HH--H--HhCCCCeEEEEecCcCchhhccC-ccc
Confidence 12266 88884 555 44 4 99999999999 99999999 985
No 34
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.95 E-value=1.3e-27 Score=299.64 Aligned_cols=167 Identities=23% Similarity=0.356 Sum_probs=129.0
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC---CCeEEEEcCcHHHHHHHHHHHHHHhhh
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---EAKVVYIAPLKALVKERVADWKVKFEA 770 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~---~~~~lvi~Pt~~L~~q~~~~~~~~~~~ 770 (1034)
+++..|+|+|.++++.++ .++++++++|||+|||++|++|++..+...+ +.++||++|+++|+.|+++.+.+.+..
T Consensus 244 ~g~~~l~~~Q~~~i~~~l-~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp ----CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred cCCCCCCHHHHHHHHHHH-hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 456679999999999998 7899999999999999999999999988765 789999999999999999999876654
Q ss_pred hcCCeEEEEcCCCCcccc---ccCCCcEEEECHhhHHHHHhcccccc-ccCcccEEEEecccccCCCChhHHHHHHHHHH
Q psy13788 771 RLKKKVVELTGDVTPDIQ---AISSASVIVTTPEKWDGVSRSWQNRN-YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVN 846 (1034)
Q Consensus 771 ~~~~~v~~~~g~~~~~~~---~~~~~~IiV~Tpe~l~~l~~~~~~~~-~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~ 846 (1034)
.++++..++|+.....+ ...+++|+|+||+++...+.. ... .+.++++||+||||++.+.. .+..++.++.
T Consensus 323 -~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~~iViDEaH~~~~~~--~~~~i~~~~~ 397 (797)
T 4a2q_A 323 -QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYL 397 (797)
T ss_dssp -GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEETTGGGCSTTS--HHHHHHHHHH
T ss_pred -CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHh--ccccccccCCEEEEECccccCCCc--cHHHHHHHHH
Confidence 68999999998865432 235789999999999777763 333 57889999999999998632 2555554332
Q ss_pred Hh-hhccCCCeEEEEEccCCC
Q psy13788 847 FI-SSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 847 ~l-~~~~~~~~~iv~lSATl~ 866 (1034)
.. .....+..+++++|||+.
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCC
T ss_pred HHhhccCCCCCeEEEEcCCcc
Confidence 21 112255689999999995
No 35
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.95 E-value=3.3e-27 Score=293.36 Aligned_cols=167 Identities=19% Similarity=0.300 Sum_probs=130.0
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC---CCeEEEEcCcHHHHHHHHHHHHHHhhh
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---EAKVVYIAPLKALVKERVADWKVKFEA 770 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~---~~~~lvi~Pt~~L~~q~~~~~~~~~~~ 770 (1034)
+||.+|+|+|.++++.++ .++|+++++|||+|||++|++|+++.+...+ +.++||++||++|+.|+.+.+.+.+..
T Consensus 9 ~g~~~lr~~Q~~~i~~~l-~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp TC--CCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred cCCCCccHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 566779999999999998 7899999999999999999999998887643 279999999999999999999876543
Q ss_pred hcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhcccccc-ccCcccEEEEecccccCCCChhHHHHHHHHHH
Q psy13788 771 RLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRN-YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVN 846 (1034)
Q Consensus 771 ~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~-~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~ 846 (1034)
.++++..++|+.....+. ..+++|+|+||+++...+.. ... .+.++++||+||||++.+.. .+..++.++.
T Consensus 88 -~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~--~~~~~l~~~~~vViDEaH~~~~~~--~~~~i~~~~l 162 (696)
T 2ykg_A 88 -HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLMIFDECHNTSKQH--PYNMIMFNYL 162 (696)
T ss_dssp -TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT--TSSCCGGGCSEEEEETGGGCSTTC--HHHHHHHHHH
T ss_pred -CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc--CcccccccccEEEEeCCCcccCcc--cHHHHHHHHH
Confidence 688999999987544322 24789999999999777663 223 57889999999999998632 3554443221
Q ss_pred H--hhhccCCCeEEEEEccCCC
Q psy13788 847 F--ISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 847 ~--l~~~~~~~~~iv~lSATl~ 866 (1034)
. +........++++||||+.
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCC
T ss_pred HHhhcccCCCCCeEEEEeCccc
Confidence 1 1122346789999999987
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.94 E-value=2.6e-26 Score=290.76 Aligned_cols=167 Identities=23% Similarity=0.356 Sum_probs=128.0
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC---CCeEEEEcCcHHHHHHHHHHHHHHhhh
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---EAKVVYIAPLKALVKERVADWKVKFEA 770 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~---~~~~lvi~Pt~~L~~q~~~~~~~~~~~ 770 (1034)
+++..|+|+|.++++.++ .|+++++++|||+|||++|++|++..+...+ +.++||++|+++|+.|+++.+.+.+..
T Consensus 244 ~~~~~~r~~Q~~ai~~il-~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp ----CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHH-cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 345669999999999998 7899999999999999999999998887755 789999999999999999999876654
Q ss_pred hcCCeEEEEcCCCCcccc---ccCCCcEEEECHhhHHHHHhcccccc-ccCcccEEEEecccccCCCChhHHHHHHHHHH
Q psy13788 771 RLKKKVVELTGDVTPDIQ---AISSASVIVTTPEKWDGVSRSWQNRN-YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVN 846 (1034)
Q Consensus 771 ~~~~~v~~~~g~~~~~~~---~~~~~~IiV~Tpe~l~~l~~~~~~~~-~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~ 846 (1034)
.++++..++|+.....+ ...+++|+|+||+++...+.. ... .+.++++||+||||++.... .+..++.++.
T Consensus 323 -~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~--~~~~~l~~~~liViDEaH~~~~~~--~~~~i~~~~~ 397 (936)
T 4a2w_A 323 -QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYL 397 (936)
T ss_dssp -TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEEETGGGCSTTC--HHHHHHHHHH
T ss_pred -cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHc--CccccccCCCEEEEECccccCCCc--cHHHHHHHHH
Confidence 58999999998755432 234689999999999877763 233 57889999999999998632 2555554332
Q ss_pred Hh-hhccCCCeEEEEEccCCC
Q psy13788 847 FI-SSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 847 ~l-~~~~~~~~~iv~lSATl~ 866 (1034)
.. ........++++||||+.
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCC
T ss_pred HHhhccCCCcCeEEEecCCcc
Confidence 21 112345689999999985
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.94 E-value=4.4e-27 Score=292.35 Aligned_cols=166 Identities=19% Similarity=0.262 Sum_probs=120.5
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCC----CeEEEEcCcHHHHHHH-HHHHHHHhhhhcC
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPE----AKVVYIAPLKALVKER-VADWKVKFEARLK 773 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~----~~~lvi~Pt~~L~~q~-~~~~~~~~~~~~~ 773 (1034)
|+|+|.++++.++ .++++++.+|||+|||++|++|++..+...+. .++||++|+++|+.|+ .+.+.+.+.. +
T Consensus 8 l~~~Q~~~i~~il-~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~--~ 84 (699)
T 4gl2_A 8 LRPYQMEVAQPAL-EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK--W 84 (699)
T ss_dssp CCHHHHHHHHHHH-SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--T
T ss_pred ccHHHHHHHHHHH-hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--C
Confidence 9999999999998 68899999999999999999999988765433 8999999999999999 8988876554 4
Q ss_pred CeEEEEcCCCCcccc---ccCCCcEEEECHhhHHHHHhcc----ccccccCcccEEEEecccccCC--CChhHHHHHHHH
Q psy13788 774 KKVVELTGDVTPDIQ---AISSASVIVTTPEKWDGVSRSW----QNRNYVQSVALIIIDEIHLLGE--DRGPVLEVIVSR 844 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~---~~~~~~IiV~Tpe~l~~l~~~~----~~~~~l~~l~~lViDEaH~l~~--~~~~~~~~il~r 844 (1034)
+++..++|+...... ....++|+|+||+++...+.+. .....+.++++||+||||++.. .+...+...+..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 889999998765532 2357999999999997666321 2334578899999999999854 233333322221
Q ss_pred -HHHhh-----hccCCCeEEEEEccCCCC
Q psy13788 845 -VNFIS-----SYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 845 -l~~l~-----~~~~~~~~iv~lSATl~~ 867 (1034)
++... ....+..++++||||+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hhcccccccccccCCCCCEEEEecccccc
Confidence 11000 001155789999999986
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=5.4e-26 Score=291.56 Aligned_cols=276 Identities=13% Similarity=0.179 Sum_probs=198.6
Q ss_pred ccccccccCCCChhHHHHHHHHhc---CCC--cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHH
Q psy13788 689 QYESLYKFSHFNPIQTQIFHCLYH---TDN--NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVAD 763 (1034)
Q Consensus 689 ~~~~~~~~~~~~~~Q~~ai~~l~~---~~~--~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~ 763 (1034)
.+...|+|+ +||+|.+|++.++. +++ ++++++|||+|||++|+++++..+.. +.+++|++||++|+.|+++.
T Consensus 595 ~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--g~~vlvlvPt~~La~Q~~~~ 671 (1151)
T 2eyq_A 595 LFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--HKQVAVLVPTTLLAQQHYDN 671 (1151)
T ss_dssp HHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHH
T ss_pred HHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--CCeEEEEechHHHHHHHHHH
Confidence 345557887 79999999998874 254 89999999999999999999877654 67999999999999999999
Q ss_pred HHHHhhhhcCCeEEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChh
Q psy13788 764 WKVKFEARLKKKVVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGP 836 (1034)
Q Consensus 764 ~~~~~~~~~~~~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~ 836 (1034)
+.+.+.. .++++..++|..+..... ...++|+|+||+.+. ....+.+++++|+||+|+++ .
T Consensus 672 ~~~~~~~-~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-------~~~~~~~l~lvIiDEaH~~g----~ 739 (1151)
T 2eyq_A 672 FRDRFAN-WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-------SDVKFKDLGLLIVDEEHRFG----V 739 (1151)
T ss_dssp HHHHSTT-TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-------SCCCCSSEEEEEEESGGGSC----H
T ss_pred HHHHhhc-CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-------CCccccccceEEEechHhcC----h
Confidence 9987775 678899998876543321 235899999998652 23457889999999999964 3
Q ss_pred HHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHH
Q psy13788 837 VLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKP 916 (1034)
Q Consensus 837 ~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 916 (1034)
.....+..+ ..+.++++||||+.+...-....+........ .+.....++...+..... .. .
T Consensus 740 ~~~~~l~~l-------~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~-~~~~~r~~i~~~~~~~~~-------~~---i 801 (1151)
T 2eyq_A 740 RHKERIKAM-------RANVDILTLTATPIPRTLNMAMSGMRDLSIIA-TPPARRLAVKTFVREYDS-------MV---V 801 (1151)
T ss_dssp HHHHHHHHH-------HTTSEEEEEESSCCCHHHHHHHTTTSEEEECC-CCCCBCBCEEEEEEECCH-------HH---H
T ss_pred HHHHHHHHh-------cCCCCEEEEcCCCChhhHHHHHhcCCCceEEe-cCCCCccccEEEEecCCH-------HH---H
Confidence 333333322 35689999999986532222222332222222 222222334433332110 11 1
Q ss_pred HHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCC
Q psy13788 917 IYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAE 996 (1034)
Q Consensus 917 ~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~ 996 (1034)
....+.....+++++|||++++.++.++..|.+.... .++..+||+|+
T Consensus 802 ~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~--------------------------------~~v~~lhg~~~ 849 (1151)
T 2eyq_A 802 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPE--------------------------------ARIAIGHGQMR 849 (1151)
T ss_dssp HHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTT--------------------------------SCEEECCSSCC
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCC--------------------------------CeEEEEeCCCC
Confidence 1122334456789999999999999999888765321 23889999999
Q ss_pred HHHHHHhcccchhHhhcCCceEEEechhhhhccCCCCC
Q psy13788 997 AAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFNR 1034 (1034)
Q Consensus 997 ~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs~ 1034 (1034)
+.+|+.+++ . |++|+++|||||+++++|+ |+.+
T Consensus 850 ~~eR~~il~--~--F~~g~~~VLVaT~v~e~Gi-Dip~ 882 (1151)
T 2eyq_A 850 ERELERVMN--D--FHHQRFNVLVCTTIIETGI-DIPT 882 (1151)
T ss_dssp HHHHHHHHH--H--HHTTSCCEEEESSTTGGGS-CCTT
T ss_pred HHHHHHHHH--H--HHcCCCcEEEECCcceeee-cccC
Confidence 999999977 7 9999999999999999999 9863
No 39
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.94 E-value=8.7e-27 Score=252.36 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=138.7
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh-----CCCCeEEEEcCcHHHHHHHHHHHHHHh
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-----CPEAKVVYIAPLKALVKERVADWKVKF 768 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~-----~~~~~~lvi~Pt~~L~~q~~~~~~~~~ 768 (1034)
+||..|+|+|.++++.++ .++|++++||||||||++|++|+++.+.+ ..+.++||++||++|+.|+++.+++.+
T Consensus 72 ~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 150 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLL-EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM 150 (262)
T ss_dssp TTCCBCCHHHHHHHHHHH-HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 478889999999999998 67899999999999999999999988865 247889999999999999999998655
Q ss_pred hhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHH
Q psy13788 769 EARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSR 844 (1034)
Q Consensus 769 ~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~r 844 (1034)
.. .+..+..+.|+....... ..+++|+|+||+++..+++.. ....+.+++++|+||||++.+ +++..++.++..
T Consensus 151 ~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~-~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 151 TH-HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT-PGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 228 (262)
T ss_dssp TT-CCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHC-TTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHH
T ss_pred hh-cCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHcc-CCcccccCCEEEEcChHHHhhhhHHHHHHHHHHh
Confidence 54 788889999887654332 246899999999998777642 234578899999999999876 688777777643
Q ss_pred HHHhhhccCCCeEEEEEccCCCCH-HHHHh
Q psy13788 845 VNFISSYTKRNVRLVGLSTALANA-KDLAT 873 (1034)
Q Consensus 845 l~~l~~~~~~~~~iv~lSATl~~~-~~l~~ 873 (1034)
.+...|++++|||+++. ..+++
T Consensus 229 -------~~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 229 -------LPTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp -------SCSSSEEEEECSSCCHHHHHHHH
T ss_pred -------CCCCCeEEEEEecCCHHHHHHHH
Confidence 35678999999999873 44443
No 40
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.94 E-value=3.2e-26 Score=291.60 Aligned_cols=271 Identities=13% Similarity=0.112 Sum_probs=189.2
Q ss_pred cccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhh
Q psy13788 692 SLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771 (1034)
Q Consensus 692 ~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~ 771 (1034)
..++|+ |+|+|.++++.++ .|+|++++||||||||++|+++++..+. .+.++||++||++|+.|+++++.+ ++ .
T Consensus 73 ~~~gf~-pt~iQ~~ai~~il-~g~dvlv~ApTGSGKTl~~l~~il~~~~--~~~~~Lil~PtreLa~Q~~~~l~~-l~-~ 146 (1104)
T 4ddu_A 73 KKFGKD-LTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLAR--KGKKSALVFPTVTLVKQTLERLQK-LA-D 146 (1104)
T ss_dssp HHSSSC-CCHHHHHHHHHHT-TTCCEEECCSTTCCHHHHHHHHHHHHHT--TTCCEEEEESSHHHHHHHHHHHHT-TS-C
T ss_pred HhcCCC-CCHHHHHHHHHHH-cCCCEEEEeCCCCcHHHHHHHHHHHHHh--cCCeEEEEechHHHHHHHHHHHHH-hh-C
Confidence 345774 9999999999998 7899999999999999998888887763 478999999999999999999986 55 4
Q ss_pred cCCeEEEEcCCCCcccc------cc-CCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC------------
Q psy13788 772 LKKKVVELTGDVTPDIQ------AI-SSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE------------ 832 (1034)
Q Consensus 772 ~~~~v~~~~g~~~~~~~------~~-~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~------------ 832 (1034)
.++++..++|+.+...+ .. ..++|+|+||+++..++.. ..+.++++||+||||++..
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 78899999998876321 11 2489999999999776652 3467899999999998764
Q ss_pred CChhH-HHHHHHHHHH--hhhccC--CCeEEEEEccCC-CCH---HHHHhHhcccCCceeecCCCCcccccEEEEecCCC
Q psy13788 833 DRGPV-LEVIVSRVNF--ISSYTK--RNVRLVGLSTAL-ANA---KDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPG 903 (1034)
Q Consensus 833 ~~~~~-~~~il~rl~~--l~~~~~--~~~~iv~lSATl-~~~---~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 903 (1034)
++... +..++..+.. .....+ .+.|++++|||+ +.. ..+..++++.... ....+..+...+...
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~-----~~~~~~~i~~~~~~~-- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRISS-- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCB-----CCCCCCCEEEEEESC--
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEecc-----CCCCcCCceeEEEec--
Confidence 22223 3444433320 000111 678999999994 432 2334444422111 111122233332211
Q ss_pred CCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHH
Q psy13788 904 KQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLT 983 (1034)
Q Consensus 904 ~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~ 983 (1034)
.....+.+.+... ++++||||++++.|+.++..|...
T Consensus 296 --------~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~--------------------------------- 332 (1104)
T 4ddu_A 296 --------RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRF--------------------------------- 332 (1104)
T ss_dssp --------CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHT---------------------------------
T ss_pred --------CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhC---------------------------------
Confidence 1122344555553 479999999999999998877652
Q ss_pred hhhchh-hhcCCCCHHHHHHhcccchhHhhcCCceEEEe----chhhhhccCCCCC
Q psy13788 984 IAFGIG-FHHAAAEAAQSSALQMPKLAALSSKENQNVIN----RSTSANGNFDFNR 1034 (1034)
Q Consensus 984 l~~gv~-~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVa----T~~l~~Gv~Dfs~ 1034 (1034)
+..+. .+||. +|+ ++ . |++|+++|||| |+++++|| |+.+
T Consensus 333 -g~~~~~~lhg~----rr~--l~--~--F~~G~~~VLVatas~TdvlarGI-Dip~ 376 (1104)
T 4ddu_A 333 -KFNVGETWSEF----EKN--FE--D--FKVGKINILIGVQAYYGKLTRGV-DLPE 376 (1104)
T ss_dssp -TCCEEESSSSH----HHH--HH--H--HHHTSCSEEEEETTTHHHHCCSC-CCTT
T ss_pred -CCCeeeEecCc----HHH--HH--H--HHCCCCCEEEEecCCCCeeEecC-cCCC
Confidence 12366 88882 334 55 5 99999999999 99999999 9863
No 41
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.94 E-value=5.8e-27 Score=286.72 Aligned_cols=281 Identities=14% Similarity=0.193 Sum_probs=185.5
Q ss_pred cccccCCCChhHHHHHHHHhcC-----CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy13788 692 SLYKFSHFNPIQTQIFHCLYHT-----DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKV 766 (1034)
Q Consensus 692 ~~~~~~~~~~~Q~~ai~~l~~~-----~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~ 766 (1034)
+.++| +|+++|.+|++.+++. ..+++++||||||||++|++|++..+.. +.+++|++||++|+.|+++.+.+
T Consensus 363 ~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--g~qvlvlaPtr~La~Q~~~~l~~ 439 (780)
T 1gm5_A 363 KSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--GFQTAFMVPTSILAIQHYRRTVE 439 (780)
T ss_dssp HHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--TSCEEEECSCHHHHHHHHHHHHH
T ss_pred HhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHH
Confidence 34678 6999999999988732 2589999999999999999999998875 68999999999999999999997
Q ss_pred HhhhhcCCeEEEEcCCCCccccc-------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHH
Q psy13788 767 KFEARLKKKVVELTGDVTPDIQA-------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLE 839 (1034)
Q Consensus 767 ~~~~~~~~~v~~~~g~~~~~~~~-------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~ 839 (1034)
.+.. .++++..++|+.....+. ...++|+|+||+.+.. ...+.+++++|+||+|+++....
T Consensus 440 ~~~~-~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~~~~~~l~lVVIDEaHr~g~~qr---- 507 (780)
T 1gm5_A 440 SFSK-FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-------DVHFKNLGLVIIDEQHRFGVKQR---- 507 (780)
T ss_dssp HHTC-SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------CCCCSCCCEEEEESCCCC---------
T ss_pred Hhhh-cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------hhhccCCceEEecccchhhHHHH----
Confidence 7755 689999999988754421 2358999999987632 34578899999999999753211
Q ss_pred HHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHH
Q psy13788 840 VIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYT 919 (1034)
Q Consensus 840 ~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (1034)
. .+ .......++++||||+.+...-..+.+.....+....|..+ .++...+.. . .....+++
T Consensus 508 -----~-~l-~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r-~~i~~~~~~--~--------~~~~~l~~ 569 (780)
T 1gm5_A 508 -----E-AL-MNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGR-KEVQTMLVP--M--------DRVNEVYE 569 (780)
T ss_dssp -----C-CC-CSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSC-CCCEECCCC--S--------STHHHHHH
T ss_pred -----H-HH-HHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCC-cceEEEEec--c--------chHHHHHH
Confidence 0 01 12234688999999986532222233322222222222222 122222111 0 01123344
Q ss_pred HHHh-hCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHH
Q psy13788 920 AIKQ-HSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAA 998 (1034)
Q Consensus 920 ~l~~-~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~ 998 (1034)
.+.. ...+.+++|||++++.++.+.. ...+.+.+.+.+..+ -+.+|+.+||+|+++
T Consensus 570 ~i~~~l~~g~qvlVf~~~ie~se~l~~--------------------~~a~~l~~~L~~~~~---~~~~v~~lHG~m~~~ 626 (780)
T 1gm5_A 570 FVRQEVMRGGQAFIVYPLIEESDKLNV--------------------KSAVEMYEYLSKEVF---PEFKLGLMHGRLSQE 626 (780)
T ss_dssp HHHHHTTTSCCBCCBCCCC----------------------------CHHHHHHHSGGGSCC------CBCCCCSSSCCS
T ss_pred HHHHHHhcCCcEEEEecchhhhhhhhH--------------------HHHHHHHHHHHhhhc---CCCcEEEEeCCCCHH
Confidence 4433 3467899999998866432100 011111111111000 023589999999999
Q ss_pred HHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 999 QSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 999 ~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+|+.+++ . |++|+++|||||+++++|+ |+.
T Consensus 627 eR~~v~~--~--F~~G~~~ILVaT~vie~GI-DiP 656 (780)
T 1gm5_A 627 EKDRVML--E--FAEGRYDILVSTTVIEVGI-DVP 656 (780)
T ss_dssp CSHHHHH--H--HTTTSSSBCCCSSCCCSCS-CCT
T ss_pred HHHHHHH--H--HHCCCCeEEEECCCCCccc-cCC
Confidence 9999988 7 9999999999999999999 985
No 42
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=2.7e-27 Score=301.99 Aligned_cols=273 Identities=14% Similarity=0.114 Sum_probs=190.9
Q ss_pred cccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 690 YESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 690 ~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
+.+.+||. | |+|.++++.++ .|+|++++||||||||+ |.+|++..+.. .+.++||++||++|+.|+++.+.+.+.
T Consensus 50 ~~~~~g~~-p-~iQ~~ai~~il-~g~dvlv~apTGSGKTl-~~lp~l~~~~~-~~~~~lil~PtreLa~Q~~~~l~~l~~ 124 (1054)
T 1gku_B 50 FRKCVGEP-R-AIQKMWAKRIL-RKESFAATAPTGVGKTS-FGLAMSLFLAL-KGKRCYVIFPTSLLVIQAAETIRKYAE 124 (1054)
T ss_dssp HHTTTCSC-C-HHHHHHHHHHH-TTCCEECCCCBTSCSHH-HHHHHHHHHHT-TSCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCC-H-HHHHHHHHHHH-hCCCEEEEcCCCCCHHH-HHHHHHHHHhh-cCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 34457899 9 99999999998 78999999999999998 88888877655 478999999999999999999986554
Q ss_pred hhcCC----eEEEEcCCCCcccc-----ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHH
Q psy13788 770 ARLKK----KVVELTGDVTPDIQ-----AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEV 840 (1034)
Q Consensus 770 ~~~~~----~v~~~~g~~~~~~~-----~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~ 840 (1034)
. .++ ++..++|+.....+ .+..++|+|+||+++..++.+ +.+++++|+||||++.+ ++..++.
T Consensus 125 ~-~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~-~~~~~~~ 196 (1054)
T 1gku_B 125 K-AGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILK-ASKNVDK 196 (1054)
T ss_dssp T-TCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHT-STHHHHH
T ss_pred h-cCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhh-ccccHHH
Confidence 4 677 89999998876542 233499999999999876653 66899999999999987 7889998
Q ss_pred HHHHHHHhh----hccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCC-CcccccEEEEecCCCCCCchhhhhccH
Q psy13788 841 IVSRVNFIS----SYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPS-VRPVPLEVHISGFPGKQYCPRMAKMNK 915 (1034)
Q Consensus 841 il~rl~~l~----~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~-~r~~~l~~~~~~~~~~~~~~~~~~~~~ 915 (1034)
++.++.+.. ...+...|++++|||+++...+..++...... +...+. .....+...... .....
T Consensus 197 i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~-i~v~~~~~~~~~i~~~~~~----------~~k~~ 265 (1054)
T 1gku_B 197 LLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN-FDIGSSRITVRNVEDVAVN----------DESIS 265 (1054)
T ss_dssp HHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC-CCCSCCEECCCCEEEEEES----------CCCTT
T ss_pred HHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE-EEccCcccCcCCceEEEec----------hhHHH
Confidence 888775321 12245677899999988753222221100000 011111 111122322221 11122
Q ss_pred HHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCC
Q psy13788 916 PIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAA 995 (1034)
Q Consensus 916 ~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~ 995 (1034)
.+.+.+... ++++||||++++.|+.++..|... ..+..+||++
T Consensus 266 ~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-----------------------------------~~v~~lhg~~ 308 (1054)
T 1gku_B 266 TLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-----------------------------------FRIGIVTATK 308 (1054)
T ss_dssp TTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-----------------------------------SCEEECTTSS
T ss_pred HHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-----------------------------------cCeeEEeccH
Confidence 233444443 568999999999999888765431 1278999998
Q ss_pred CHHHHHHhcccchhHhhcCCceEEEe----chhhhhccCCCC
Q psy13788 996 EAAQSSALQMPKLAALSSKENQNVIN----RSTSANGNFDFN 1033 (1034)
Q Consensus 996 ~~~~R~~ie~~~l~~f~~g~i~VLVa----T~~l~~Gv~Dfs 1033 (1034)
. .+++ . |++|+++|||| |+++++|| |+.
T Consensus 309 ~-----~~l~--~--F~~G~~~VLVaTas~Tdv~~rGI-Dip 340 (1054)
T 1gku_B 309 K-----GDYE--K--FVEGEIDHLIGTAHYYGTLVRGL-DLP 340 (1054)
T ss_dssp S-----HHHH--H--HHHTSCSEEEEECC------CCS-CCT
T ss_pred H-----HHHH--H--HHcCCCcEEEEecCCCCeeEecc-ccC
Confidence 3 3444 4 99999999999 99999999 986
No 43
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=1.4e-25 Score=266.36 Aligned_cols=158 Identities=27% Similarity=0.347 Sum_probs=122.9
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
.|+|+|.++++.++ .+ ++++.+|||+|||+++++++...+. .++.++||++|+++|+.|+.+++.+.++. .+.++.
T Consensus 9 ~l~~~Q~~~i~~~~-~~-~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~ 84 (494)
T 1wp9_A 9 QPRIYQEVIYAKCK-ET-NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKIV 84 (494)
T ss_dssp CCCHHHHHHHHHGG-GS-CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGEE
T ss_pred CccHHHHHHHHHHh-hC-CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCc-chhheE
Confidence 39999999999998 44 9999999999999999999988776 35789999999999999999998865531 234788
Q ss_pred EEcCCCCccccc--cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCC
Q psy13788 778 ELTGDVTPDIQA--ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRN 855 (1034)
Q Consensus 778 ~~~g~~~~~~~~--~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~ 855 (1034)
.++|+....... ...++|+|+||+++...+.. ....+.++++||+||||++.+. ..+..+...+. .....
T Consensus 85 ~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~--~~~~~~~~~~~----~~~~~ 156 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGN--YAYVFIAREYK----RQAKN 156 (494)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTT--CHHHHHHHHHH----HHCSS
T ss_pred EeeCCcchhhhhhhccCCCEEEecHHHHHHHHhc--CCcchhhceEEEEECCcccCCC--CcHHHHHHHHH----hcCCC
Confidence 899887654322 34689999999999776652 3445788999999999999753 22333443332 23457
Q ss_pred eEEEEEccCCCC
Q psy13788 856 VRLVGLSTALAN 867 (1034)
Q Consensus 856 ~~iv~lSATl~~ 867 (1034)
.++++||||+.+
T Consensus 157 ~~~l~lTaTp~~ 168 (494)
T 1wp9_A 157 PLVIGLTASPGS 168 (494)
T ss_dssp CCEEEEESCSCS
T ss_pred CeEEEEecCCCC
Confidence 789999999985
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.93 E-value=2.6e-25 Score=265.64 Aligned_cols=276 Identities=16% Similarity=0.201 Sum_probs=184.6
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
+|+|+|.++++.++ .++++++++|||+|||++|++++...+.. ++.++||++|+++|+.|+++++. .+....+..+.
T Consensus 113 ~l~~~Q~~ai~~~~-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~vlvl~P~~~L~~Q~~~~~~-~~~~~~~~~v~ 189 (510)
T 2oca_A 113 EPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFV-DYRLFSHAMIK 189 (510)
T ss_dssp CCCHHHHHHHHHHH-HHSEEEEECCSTTTHHHHHHHHHHHHHHH-CSSEEEEEESSHHHHHHHHHHHH-HTTSSCGGGEE
T ss_pred CCCHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHHhC-CCCeEEEEECcHHHHHHHHHHHH-HhhcCCccceE
Confidence 59999999999998 56899999999999999999999887765 34599999999999999999996 44443456788
Q ss_pred EEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeE
Q psy13788 778 ELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVR 857 (1034)
Q Consensus 778 ~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~ 857 (1034)
.+.|+.....+....++|+|+||+.+. + .....+.++++||+||||++.. ..++.++ .......+
T Consensus 190 ~~~~~~~~~~~~~~~~~I~i~T~~~l~---~--~~~~~~~~~~liIiDE~H~~~~---~~~~~il-------~~~~~~~~ 254 (510)
T 2oca_A 190 KIGGGASKDDKYKNDAPVVVGTWQTVV---K--QPKEWFSQFGMMMNDECHLATG---KSISSII-------SGLNNCMF 254 (510)
T ss_dssp ECGGGCCTTGGGCTTCSEEEEEHHHHT---T--SCGGGGGGEEEEEEETGGGCCH---HHHHHHG-------GGCTTCCE
T ss_pred EEecCCccccccccCCcEEEEeHHHHh---h--chhhhhhcCCEEEEECCcCCCc---ccHHHHH-------HhcccCcE
Confidence 888887766555567999999999753 2 1234567899999999999874 3333333 33456778
Q ss_pred EEEEccCCCCHH-H---HHhHhcccCCceeecCCCC-----cccccEEE--EecCCC--------CCCchhhh------h
Q psy13788 858 LVGLSTALANAK-D---LATWLNITKQGMYNFRPSV-----RPVPLEVH--ISGFPG--------KQYCPRMA------K 912 (1034)
Q Consensus 858 iv~lSATl~~~~-~---l~~~l~~~~~~~~~~~~~~-----r~~~l~~~--~~~~~~--------~~~~~~~~------~ 912 (1034)
+++||||+++.. . +..+++ ...+...+.. ...+..+. ....+. ..+..... .
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFG---EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSK 331 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHC---SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhC---CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHH
Confidence 999999997531 2 222332 1222222210 00011111 111110 11111000 0
Q ss_pred ccHHHHHHHHhh-C-CCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhh
Q psy13788 913 MNKPIYTAIKQH-S-PEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGF 990 (1034)
Q Consensus 913 ~~~~~~~~l~~~-~-~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~ 990 (1034)
....+.+.+... . .+.+++|||+ ++.|+.+++.|.+.. ..+..
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~----------------------------------~~v~~ 376 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEY----------------------------------DKVYY 376 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTC----------------------------------SSEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcC----------------------------------CCeEE
Confidence 111223333322 2 3445566666 787877666554321 12789
Q ss_pred hcCCCCHHHHHHhcccchhHhhcCCceEEEec-hhhhhccCCCCC
Q psy13788 991 HHAAAEAAQSSALQMPKLAALSSKENQNVINR-STSANGNFDFNR 1034 (1034)
Q Consensus 991 ~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT-~~l~~Gv~Dfs~ 1034 (1034)
+||+|+..+|+.+++ . |++|+++||||| +++++|+ |+.+
T Consensus 377 ~~g~~~~~~r~~i~~--~--f~~g~~~vLv~T~~~~~~Gi-Dip~ 416 (510)
T 2oca_A 377 VSGEVDTETRNIMKT--L--AENGKGIIIVASYGVFSTGI-SVKN 416 (510)
T ss_dssp ESSSTTHHHHHHHHH--H--HHHCCSCEEEEEHHHHHHSC-CCCS
T ss_pred EECCCCHHHHHHHHH--H--HhCCCCCEEEEEcChhhccc-cccc
Confidence 999999999999887 7 999999999999 9999999 9853
No 45
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.92 E-value=2.6e-25 Score=238.18 Aligned_cols=181 Identities=15% Similarity=0.181 Sum_probs=144.2
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC------CCCeEEE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC------PEAKVVY 749 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~------~~~~~lv 749 (1034)
++++....++.. ++|..|+|+|.++++.++ .|++++++||||||||++|++|++..+... .++++||
T Consensus 35 ~l~~~l~~~l~~------~g~~~~~~~Q~~~i~~~~-~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~li 107 (242)
T 3fe2_A 35 NFPANVMDVIAR------QNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLV 107 (242)
T ss_dssp TCCHHHHHHHHT------TTCCSCCHHHHHHHHHHH-HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEE
T ss_pred CCCHHHHHHHHH------CCCCCCCHHHHHHHHHHh-CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEE
Confidence 455554555544 356679999999999998 789999999999999999999999888752 4678999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEec
Q psy13788 750 IAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDE 826 (1034)
Q Consensus 750 i~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDE 826 (1034)
++||++|+.|+.+.+.+. ....++++..+.|+....... ..+++|+|+||+++..++.. ....+.+++++|+||
T Consensus 108 l~Pt~~L~~Q~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 108 LAPTRELAQQVQQVAAEY-CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC--GKTNLRRTTYLVLDE 184 (242)
T ss_dssp ECSSHHHHHHHHHHHHHH-HHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH--TSCCCTTCCEEEETT
T ss_pred EeCcHHHHHHHHHHHHHH-HhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--CCCCcccccEEEEeC
Confidence 999999999999888754 444789999999987655332 34689999999999877763 445678999999999
Q ss_pred ccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHh
Q psy13788 827 IHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLAT 873 (1034)
Q Consensus 827 aH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~ 873 (1034)
||++.+ +|+..++.++. ..+.+.|++++|||+++ ...+.+
T Consensus 185 ah~l~~~~~~~~~~~i~~-------~~~~~~q~~~~SAT~~~~~~~~~~ 226 (242)
T 3fe2_A 185 ADRMLDMGFEPQIRKIVD-------QIRPDRQTLMWSATWPKEVRQLAE 226 (242)
T ss_dssp HHHHHHTTCHHHHHHHHT-------TSCSSCEEEEEESCCCHHHHHHHH
T ss_pred HHHHhhhCcHHHHHHHHH-------hCCccceEEEEEeecCHHHHHHHH
Confidence 999876 67877777663 34568899999999987 344444
No 46
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.92 E-value=1.8e-25 Score=237.22 Aligned_cols=186 Identities=17% Similarity=0.240 Sum_probs=143.3
Q ss_pred cCCCCCCCCccccCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh--
Q psy13788 664 VPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-- 741 (1034)
Q Consensus 664 ~p~~~~~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~-- 741 (1034)
+|.+...+.+++++++....++... ||.+|+|+|.++++.++ +++|++++||||||||++|++|++..+..
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~------g~~~~~~~Q~~~i~~~~-~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~ 86 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRV------GILKPTPIQSQAWPIIL-QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQP 86 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHH------TCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHC---
T ss_pred CCCChhhHhhhhccCHHHHHHHHHC------CCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhcc
Confidence 4555555555556777666666554 45569999999999998 78999999999999999999999987753
Q ss_pred -----CCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccc
Q psy13788 742 -----CPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNR 813 (1034)
Q Consensus 742 -----~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~ 813 (1034)
..+.++||++||++|+.|+.+.+.+.. . .+.++..+.|+.....+. ..+++|+|+||+++..+.. ...
T Consensus 87 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~--~~~ 162 (228)
T 3iuy_A 87 ISREQRNGPGMLVLTPTRELALHVEAECSKYS-Y-KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQM--NNS 162 (228)
T ss_dssp ------CCCSEEEECSSHHHHHHHHHHHHHHC-C-TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHH--TTC
T ss_pred chhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-c-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHH--cCC
Confidence 257889999999999999999887543 2 467888888876654332 3578999999999987776 344
Q ss_pred cccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 814 NYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 814 ~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
..+.+++++|+||||++.+ +++..+..++.. .+.+.|++++|||+++
T Consensus 163 ~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~-------~~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 163 VNLRSITYLVIDEADKMLDMEFEPQIRKILLD-------VRPDRQTVMTSATWPD 210 (228)
T ss_dssp CCCTTCCEEEECCHHHHHHTTCHHHHHHHHHH-------SCSSCEEEEEESCCCH
T ss_pred cCcccceEEEEECHHHHhccchHHHHHHHHHh-------CCcCCeEEEEEeeCCH
Confidence 5678899999999999876 678777777643 3467899999999986
No 47
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.92 E-value=2.8e-24 Score=231.82 Aligned_cols=186 Identities=19% Similarity=0.267 Sum_probs=145.6
Q ss_pred ccCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC----------CC
Q psy13788 675 LELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC----------PE 744 (1034)
Q Consensus 675 l~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~----------~~ 744 (1034)
+++++....++...+ |..|+|+|.++++.++ .+++++++||||||||++|++|++..+... .+
T Consensus 28 l~l~~~l~~~l~~~g------~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 28 LKLDPTIRNNILLAS------YQRPTPIQKNAIPAIL-EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp GSCCCSTTTTTTTTT------CCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred CCCCHHHHHHHHHCC------CCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 377788788887644 4559999999999998 789999999999999999999999887643 24
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccE
Q psy13788 745 AKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVAL 821 (1034)
Q Consensus 745 ~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~ 821 (1034)
.++||++||++|+.|+++.+.+ +....++++..+.|+.....+. ..+++|+|+||+++..++.. ....+.++++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~ 177 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQK-FSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK--NKISLEFCKY 177 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHH-HHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT--TSBCCTTCCE
T ss_pred ceEEEEECCHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc--CCCChhhCCE
Confidence 6999999999999999999875 4444678888888877654322 35789999999999887763 3445788999
Q ss_pred EEEecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCH-HHHHh
Q psy13788 822 IIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANA-KDLAT 873 (1034)
Q Consensus 822 lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~-~~l~~ 873 (1034)
+|+||||++.+ +++..+..++.+++. ....+.|++++|||+++. ..++.
T Consensus 178 lViDEah~~~~~~~~~~~~~i~~~~~~---~~~~~~q~l~~SAT~~~~~~~~~~ 228 (253)
T 1wrb_A 178 IVLDEADRMLDMGFEPQIRKIIEESNM---PSGINRQTLMFSATFPKEIQKLAA 228 (253)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCC---CCGGGCEEEEEESSCCHHHHHHHH
T ss_pred EEEeCHHHHHhCchHHHHHHHHhhccC---CCCCCcEEEEEEEeCCHHHHHHHH
Confidence 99999999876 688888877753321 111267999999999763 44444
No 48
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=240.23 Aligned_cols=185 Identities=13% Similarity=0.119 Sum_probs=142.5
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcC-CCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCc
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHT-DNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPL 753 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~-~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt 753 (1034)
++++.+..++.. ++|..|+|+|.++++.++.+ ++|++++||||||||++|++|++..+... +++++||++||
T Consensus 98 ~l~~~l~~~l~~------~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Pt 171 (300)
T 3fmo_B 98 RLKPQLLQGVYA------MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (300)
T ss_dssp TCCHHHHHHHHH------TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCHHHHHHHHH------cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCc
Confidence 555555555544 35667999999999999843 48999999999999999999999887653 35689999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-
Q psy13788 754 KALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832 (1034)
Q Consensus 754 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~- 832 (1034)
++|+.|+++.+........++.+....|+.........+++|+|+||+++..++.+ .....+.+++++|+||||++.+
T Consensus 172 reLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~-~~~~~l~~l~~lVlDEad~l~~~ 250 (300)
T 3fmo_B 172 YELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSK-LKFIDPKKIKVFVLDEADVMIAT 250 (300)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTT-TCCCCGGGCSEEEETTHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHh-cCCCChhhceEEEEeCHHHHhhc
Confidence 99999999988765443346888888887766555556789999999999887753 2344578999999999999875
Q ss_pred -CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhH
Q psy13788 833 -DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATW 874 (1034)
Q Consensus 833 -~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~ 874 (1034)
++...+..++ ...+.+.|++++|||+++ ...++..
T Consensus 251 ~~~~~~~~~i~-------~~~~~~~q~i~~SAT~~~~v~~~a~~ 287 (300)
T 3fmo_B 251 QGHQDQSIRIQ-------RMLPRNCQMLLFSATFEDSVWKFAQK 287 (300)
T ss_dssp TTHHHHHHHHH-------TTSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred cCcHHHHHHHH-------HhCCCCCEEEEEeccCCHHHHHHHHH
Confidence 4444444333 445678999999999987 3444443
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.92 E-value=1.4e-24 Score=259.72 Aligned_cols=132 Identities=15% Similarity=0.082 Sum_probs=106.2
Q ss_pred ccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 693 LYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 693 ~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
..|| .|+|+|..+++.++ .|+ +..|+||+|||++|.+|++.... .+..++|++||++||.|..+.+. .+...+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll-~G~--Iaea~TGeGKTlaf~LP~~l~aL--~g~~vlVltptreLA~qd~e~~~-~l~~~l 151 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALH-DGN--IAEMKTGEGKTLTSTLPVYLNAL--TGKGVHVVTVNEYLASRDAEQMG-KIFEFL 151 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHH-TTS--EEECCTTSCHHHHHHHHHHHHHT--TSSCEEEEESSHHHHHHHHHHHH-HHHHHT
T ss_pred HcCC-CCcHHHHHhhHHHh-CCC--EEEccCCcHHHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHH-HHHhhc
Confidence 3578 79999999999987 676 99999999999999999984433 36789999999999999877766 455568
Q ss_pred CCeEEEEcCCCCccccc-cCCCcEEEECHhhH-HHHHhcc----ccccccCcccEEEEecccccC
Q psy13788 773 KKKVVELTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRSW----QNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 773 ~~~v~~~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~~----~~~~~l~~l~~lViDEaH~l~ 831 (1034)
|++++.+.|+.+...+. ..++||+|+||+++ ..+++.. .....++.+.++|+||||.++
T Consensus 152 gl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 152 GLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp TCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhh
Confidence 99999999987765433 23689999999999 4454421 123456889999999999986
No 50
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.92 E-value=8.2e-24 Score=260.96 Aligned_cols=286 Identities=13% Similarity=0.133 Sum_probs=190.8
Q ss_pred CCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHH---hCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 697 SHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFK---QCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~---~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
..|++.|.++++.++..+++++++||||||||+ ++|++.... ...+.++++++|+++|+.|+++++.+.++...+
T Consensus 92 ~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~ 169 (773)
T 2xau_A 92 ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLG 169 (773)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBT
T ss_pred cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchh
Confidence 458899999999888788899999999999999 455542221 112567999999999999999887765543333
Q ss_pred CeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccc-cCCCChhHHHHHHHHHHHhhhcc
Q psy13788 774 KKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHL-LGEDRGPVLEVIVSRVNFISSYT 852 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~-l~~~~~~~~~~il~rl~~l~~~~ 852 (1034)
..++.- ...+.......+|+++||+++...+.. ...+.++++||+||+|. ..+ ...++..++.+...
T Consensus 170 ~~vG~~---i~~~~~~~~~~~I~v~T~G~l~r~l~~---~~~l~~~~~lIlDEah~R~ld-----~d~~~~~l~~l~~~- 237 (773)
T 2xau_A 170 EEVGYS---IRFENKTSNKTILKYMTDGMLLREAME---DHDLSRYSCIILDEAHERTLA-----TDILMGLLKQVVKR- 237 (773)
T ss_dssp TTEEEE---ETTEEECCTTCSEEEEEHHHHHHHHHH---STTCTTEEEEEECSGGGCCHH-----HHHHHHHHHHHHHH-
T ss_pred heecce---eccccccCCCCCEEEECHHHHHHHHhh---CccccCCCEEEecCccccccc-----hHHHHHHHHHHHHh-
Confidence 333321 111222234789999999998665542 35688999999999996 322 12222223333222
Q ss_pred CCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEE
Q psy13788 853 KRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMI 932 (1034)
Q Consensus 853 ~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lV 932 (1034)
.++.+++++|||+ +.+.+++|++.. .++.. ..+..++++.+...+...+. ......+.+... ....+++||
T Consensus 238 ~~~~~iIl~SAT~-~~~~l~~~~~~~--~vi~v--~gr~~pv~~~~~~~~~~~~~---~~~l~~l~~~~~-~~~~g~iLV 308 (773)
T 2xau_A 238 RPDLKIIIMSATL-DAEKFQRYFNDA--PLLAV--PGRTYPVELYYTPEFQRDYL---DSAIRTVLQIHA-TEEAGDILL 308 (773)
T ss_dssp CTTCEEEEEESCS-CCHHHHHHTTSC--CEEEC--CCCCCCEEEECCSSCCSCHH---HHHHHHHHHHHH-HSCSCEEEE
T ss_pred CCCceEEEEeccc-cHHHHHHHhcCC--Ccccc--cCcccceEEEEecCCchhHH---HHHHHHHHHHHH-hcCCCCEEE
Confidence 2478999999999 567888888632 22322 33445666555443332221 111122222222 234679999
Q ss_pred EecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhh
Q psy13788 933 FVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALS 1012 (1034)
Q Consensus 933 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~ 1012 (1034)
||+++++|+.++..|...+... .... ...+..|..+||+|++++|..+++ . |+
T Consensus 309 F~~~~~~i~~l~~~L~~~~~~l-----------------~~~~------~~~~~~v~~lhg~l~~~eR~~v~~--~--f~ 361 (773)
T 2xau_A 309 FLTGEDEIEDAVRKISLEGDQL-----------------VREE------GCGPLSVYPLYGSLPPHQQQRIFE--P--AP 361 (773)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHH-----------------HHHH------CCCCEEEEEECTTCCHHHHGGGGS--C--CC
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-----------------cccc------cCCCeEEEEeCCCCCHHHHHHHHh--h--cc
Confidence 9999999999999887533210 0000 001234889999999999999988 7 99
Q ss_pred -----cCCceEEEechhhhhccCCCC
Q psy13788 1013 -----SKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1013 -----~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+|+.+|||||+++++|| |+.
T Consensus 362 ~~~~~~g~~kVlVAT~iae~Gi-dIp 386 (773)
T 2xau_A 362 ESHNGRPGRKVVISTNIAETSL-TID 386 (773)
T ss_dssp CCSSSSCCEEEEEECTHHHHTC-CCT
T ss_pred cccCCCCceEEEEeCcHHHhCc-CcC
Confidence 99999999999999999 985
No 51
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.92 E-value=1.7e-24 Score=253.01 Aligned_cols=251 Identities=13% Similarity=0.078 Sum_probs=164.4
Q ss_pred ccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 695 KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 695 ~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
|+.+++|+|. +++.+++++++++++||||||||++|++|++..+.. .+.+++|++||++|+.|+++.+. +.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~-------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLILAPTRVVAAEMEEALR-------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHhc-------Cc
Confidence 4566999985 799988555556999999999999999999876655 36899999999999999888663 33
Q ss_pred eEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCC
Q psy13788 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKR 854 (1034)
Q Consensus 775 ~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~ 854 (1034)
.+....+... .....+..|.++|++.+...+. ....+.++++||+||||++...+......+.. ....+
T Consensus 72 ~v~~~~~~~~--~~~~~~~~i~~~t~~~l~~~l~---~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~------~~~~~ 140 (451)
T 2jlq_A 72 PIRYQTPAVK--SDHTGREIVDLMCHATFTTRLL---SSTRVPNYNLIVMDEAHFTDPCSVAARGYIST------RVEMG 140 (451)
T ss_dssp CEEECCTTCS--CCCCSSCCEEEEEHHHHHHHHH---HCSCCCCCSEEEEETTTCCSHHHHHHHHHHHH------HHHTT
T ss_pred eeeeeecccc--ccCCCCceEEEEChHHHHHHhh---CcccccCCCEEEEeCCccCCcchHHHHHHHHH------hhcCC
Confidence 3332222111 1223456799999999865554 23557899999999999873122222222211 12345
Q ss_pred CeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEe
Q psy13788 855 NVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFV 934 (1034)
Q Consensus 855 ~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~ 934 (1034)
+.|+++||||++.. ...+.. .. + ++.......+...+.. ....+... .+++||||
T Consensus 141 ~~~~i~~SAT~~~~--~~~~~~-~~-----------~-~~~~~~~~~p~~~~~~--------~~~~l~~~--~~~~lVF~ 195 (451)
T 2jlq_A 141 EAAAIFMTATPPGS--TDPFPQ-SN-----------S-PIEDIEREIPERSWNT--------GFDWITDY--QGKTVWFV 195 (451)
T ss_dssp SCEEEEECSSCTTC--CCSSCC-CS-----------S-CEEEEECCCCSSCCSS--------SCHHHHHC--CSCEEEEC
T ss_pred CceEEEEccCCCcc--chhhhc-CC-----------C-ceEecCccCCchhhHH--------HHHHHHhC--CCCEEEEc
Confidence 78999999999651 111111 00 0 0001111122111111 11223332 45899999
Q ss_pred cChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcC
Q psy13788 935 SSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSK 1014 (1034)
Q Consensus 935 ~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g 1014 (1034)
+|++.|+.++..|... +..+..+||++. +.+++ . |++|
T Consensus 196 ~s~~~a~~l~~~L~~~----------------------------------g~~~~~lh~~~~----~~~~~--~--f~~g 233 (451)
T 2jlq_A 196 PSIKAGNDIANCLRKS----------------------------------GKRVIQLSRKTF----DTEYP--K--TKLT 233 (451)
T ss_dssp SSHHHHHHHHHHHHTT----------------------------------TCCEEEECTTTH----HHHGG--G--GGSS
T ss_pred CCHHHHHHHHHHHHHc----------------------------------CCeEEECCHHHH----HHHHH--h--hccC
Confidence 9999999988877542 122677888754 34555 5 9999
Q ss_pred CceEEEechhhhhccCCCC
Q psy13788 1015 ENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1015 ~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+++|||||+++++|+ |+.
T Consensus 234 ~~~vLVaT~v~~~Gi-Dip 251 (451)
T 2jlq_A 234 DWDFVVTTDISEMGA-NFR 251 (451)
T ss_dssp CCSEEEECGGGGSSC-CCC
T ss_pred CceEEEECCHHHhCc-CCC
Confidence 999999999999999 986
No 52
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.91 E-value=5.9e-25 Score=259.96 Aligned_cols=257 Identities=13% Similarity=0.126 Sum_probs=174.5
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCe-E
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK-V 776 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~-v 776 (1034)
.|+|+|.++++.++ .++++++++|||+|||++|+.++... +.++||++|+++|+.|+.+++.+ ++.+ +
T Consensus 93 ~l~~~Q~~ai~~i~-~~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~-----~~~~~v 161 (472)
T 2fwr_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-----FGEEYV 161 (472)
T ss_dssp CBCHHHHHHHHHHT-TTTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGG-----GCGGGE
T ss_pred CcCHHHHHHHHHHH-hcCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHh-----CCCcce
Confidence 39999999999998 56789999999999999999998865 68999999999999998887765 3677 8
Q ss_pred EEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhccCCC
Q psy13788 777 VELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRN 855 (1034)
Q Consensus 777 ~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~ 855 (1034)
..++|+... .++|+|+||+.+....... ..++++||+||||++.+ .+. .++. .. ..
T Consensus 162 ~~~~g~~~~------~~~Ivv~T~~~l~~~~~~~-----~~~~~liIvDEaH~~~~~~~~----~~~~-------~~-~~ 218 (472)
T 2fwr_A 162 GEFSGRIKE------LKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAESYV----QIAQ-------MS-IA 218 (472)
T ss_dssp EEBSSSCBC------CCSEEEEEHHHHHHTHHHH-----TTTCSEEEEETGGGTTSTTTH----HHHH-------TC-CC
T ss_pred EEECCCcCC------cCCEEEEEcHHHHHHHHHh-----cCCCCEEEEECCcCCCChHHH----HHHH-------hc-CC
Confidence 888887643 4789999999986554321 24589999999999986 332 2222 11 35
Q ss_pred eEEEEEccCCCCHH----HHHhHhcccCCc--eeec----CCCCcccccEEEEec-----------------------C-
Q psy13788 856 VRLVGLSTALANAK----DLATWLNITKQG--MYNF----RPSVRPVPLEVHISG-----------------------F- 901 (1034)
Q Consensus 856 ~~iv~lSATl~~~~----~l~~~l~~~~~~--~~~~----~~~~r~~~l~~~~~~-----------------------~- 901 (1034)
.+++++|||+.+.+ .+..+++..... ...+ .+......+.+.... +
T Consensus 219 ~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (472)
T 2fwr_A 219 PFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLR 298 (472)
T ss_dssp SEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTT
T ss_pred CeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 67899999998532 233333311000 0000 000000011110000 0
Q ss_pred CCCCCchh--------------------------hhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccC
Q psy13788 902 PGKQYCPR--------------------------MAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACET 955 (1034)
Q Consensus 902 ~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~ 955 (1034)
....+... .......+.+.+.. ..+.++||||++++.++.++..|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l-------- 369 (472)
T 2fwr_A 299 RAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVF-------- 369 (472)
T ss_dssp CCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHT--------
T ss_pred chhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHh--------
Confidence 00000000 00011223344444 45789999999999888777644
Q ss_pred CCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 956 NPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++..+||+++..+|+.+++ . |++|+++|||||+++++|+ |+.
T Consensus 370 -------------------------------~~~~~~g~~~~~~R~~~~~--~--F~~g~~~vLv~T~~~~~Gl-dlp 411 (472)
T 2fwr_A 370 -------------------------------LIPAITHRTSREEREEILE--G--FRTGRFRAIVSSQVLDEGI-DVP 411 (472)
T ss_dssp -------------------------------TCCBCCSSSCSHHHHTHHH--H--HHHSSCSBCBCSSCCCSSS-CSC
T ss_pred -------------------------------CcceeeCCCCHHHHHHHHH--H--HhCCCCCEEEEcCchhcCc-ccc
Confidence 1567999999999999877 6 9999999999999999999 985
No 53
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.91 E-value=1.5e-24 Score=230.30 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=139.9
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh-CCCCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-CPEAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~-~~~~~~lvi~Pt~ 754 (1034)
++++....++.. +||..|+|+|.++++.++ .++|+++++|||+|||++|++|++..+.. ..+.++||++|++
T Consensus 30 ~l~~~l~~~l~~------~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 102 (230)
T 2oxc_A 30 LLSRPVLEGLRA------AGFERPSPVQLKAIPLGR-CGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTR 102 (230)
T ss_dssp TCCHHHHHHHHH------TTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHH------CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCH
Confidence 455555555544 356679999999999998 78999999999999999999999988754 3468999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccc--ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQ--AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~ 832 (1034)
+|+.|+++.+.+......++++..+.|+.....+ ...+++|+|+||+++..++.. ....+.+++++|+||||++.+
T Consensus 103 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~ 180 (230)
T 2oxc_A 103 EIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--DYLNPGSIRLFILDEADKLLE 180 (230)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHT--TSSCGGGCCEEEESSHHHHHS
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhc--CCcccccCCEEEeCCchHhhc
Confidence 9999999999865544347889999998764332 246799999999999887763 344578899999999999976
Q ss_pred -C-ChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 833 -D-RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 833 -~-~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
+ ++..++.++.. .+...|++++|||+++
T Consensus 181 ~~~~~~~~~~i~~~-------~~~~~~~l~lSAT~~~ 210 (230)
T 2oxc_A 181 EGSFQEQINWIYSS-------LPASKQMLAVSATYPE 210 (230)
T ss_dssp TTSSHHHHHHHHHH-------SCSSCEEEEEESCCCH
T ss_pred CcchHHHHHHHHHh-------CCCCCeEEEEEeccCH
Confidence 3 77777666543 3457899999999975
No 54
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=5e-24 Score=222.30 Aligned_cols=176 Identities=18% Similarity=0.182 Sum_probs=139.2
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~ 754 (1034)
++++....++.. +||.+|+|+|.++++.++ .++++++.+|||+|||++|++|++..+... ++.++||++|++
T Consensus 9 ~l~~~l~~~l~~------~g~~~~~~~Q~~~i~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 9 CLKRELLMGIFE------MGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp CCCHHHHHHHHT------TTCCSCCHHHHHHHHHHH-TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CCCHHHHHHHHH------CCCCCCCHHHHHHHHHHc-cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 455555555554 356669999999999998 789999999999999999999999887543 457899999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccC
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~ 831 (1034)
+|+.|+++.+.+......+.++..+.|+....... ..+++|+|+||+++...+.+ ....+.+++++|+||||++.
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~ 159 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLL 159 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc--CCcCcccCCEEEEEChHHhH
Confidence 99999999988655442378888898887654322 35789999999999777763 44567889999999999987
Q ss_pred C-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 832 E-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 832 ~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
+ +++..++.++. ..+.+.|++++|||+++
T Consensus 160 ~~~~~~~l~~i~~-------~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 160 SQDFVQIMEDIIL-------TLPKNRQILLYSATFPL 189 (206)
T ss_dssp STTTHHHHHHHHH-------HSCTTCEEEEEESCCCH
T ss_pred hhCcHHHHHHHHH-------hCCccceEEEEEeeCCH
Confidence 7 67766666653 33457899999999976
No 55
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.91 E-value=1.3e-23 Score=250.53 Aligned_cols=131 Identities=13% Similarity=0.074 Sum_probs=105.5
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+|. .|+|+|..+++.++ .|+ +..|+||+|||++|.+|++..... +..++|++||++||.|.++.+.. +.+.+|
T Consensus 71 lg~-~p~~VQ~~~i~~ll-~G~--Iaem~TGsGKTlaf~LP~l~~~l~--g~~vlVltPTreLA~Q~~e~~~~-l~~~lg 143 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLN-ERC--IAEMRTGEGKTLTATLPAYLNALT--GKGVHVVTVNDYLAQRDAENNRP-LFEFLG 143 (853)
T ss_dssp HSC-CCCHHHHHHHHHHH-SSE--EEECCTTSCHHHHHHHHHHHHHTT--SSCCEEEESSHHHHHHHHHHHHH-HHHHTT
T ss_pred cCC-CCChHHHhhccccc-CCe--eeeecCCchHHHHHHHHHHHHHHc--CCcEEEEcCCHHHHHHHHHHHHH-HHHhcC
Confidence 344 49999999999987 665 999999999999999999855433 67899999999999998887764 555689
Q ss_pred CeEEEEcCCCCccccc-cCCCcEEEECHhhH-HHHHhcc----ccccccCcccEEEEecccccC
Q psy13788 774 KKVVELTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRSW----QNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~~----~~~~~l~~l~~lViDEaH~l~ 831 (1034)
++++.+.|+.+...+. ..+++|+|+||+++ ..+++.. .....+++++++|+||||.++
T Consensus 144 l~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 144 LTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp CCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 9999999987764333 23689999999998 5565532 123456889999999999987
No 56
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.90 E-value=9.5e-24 Score=225.19 Aligned_cols=183 Identities=17% Similarity=0.216 Sum_probs=140.0
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh-----CCCCeEEEE
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-----CPEAKVVYI 750 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~-----~~~~~~lvi 750 (1034)
++++....++.. ++|..|+|+|.++++.++ .++++++++|||+|||++|++|++..+.+ .++.++||+
T Consensus 31 ~l~~~l~~~l~~------~~~~~~~~~Q~~~i~~~~-~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 31 PLSKKTLKGLQE------AQYRLVTEIQKQTIGLAL-QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CCCHHHHHHHHH------TTCCBCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred CCCHHHHHHHHH------CCCCCCCHHHHHHHHHHh-CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 444444454543 356669999999999998 78999999999999999999999988754 246899999
Q ss_pred cCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccc--ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEeccc
Q psy13788 751 APLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQ--AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIH 828 (1034)
Q Consensus 751 ~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH 828 (1034)
+||++|+.|+++.+.+. ....++++..+.|+...... ...+++|+|+||+++...+.. .....+.+++++|+||||
T Consensus 104 ~Pt~~L~~q~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~-~~~~~~~~~~~lViDEah 181 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKV-GKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDE-TVSFHATDLQMLVLDEAD 181 (236)
T ss_dssp CSSHHHHHHHHHHHHHH-TTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHH-CSSCCCTTCCEEEETTHH
T ss_pred eCCHHHHHHHHHHHHHH-hCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHh-cCCcccccccEEEEeChH
Confidence 99999999999998854 44467889999987664432 246899999999999776653 223456889999999999
Q ss_pred ccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhH
Q psy13788 829 LLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATW 874 (1034)
Q Consensus 829 ~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~ 874 (1034)
++.+ +++..+..++. ..+.+.|++++|||+++ ..++++.
T Consensus 182 ~~~~~~~~~~~~~i~~-------~~~~~~~~l~~SAT~~~~~~~~~~~ 222 (236)
T 2pl3_A 182 RILDMGFADTMNAVIE-------NLPKKRQTLLFSATQTKSVKDLARL 222 (236)
T ss_dssp HHHHTTTHHHHHHHHH-------TSCTTSEEEEEESSCCHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHH-------hCCCCCeEEEEEeeCCHHHHHHHHH
Confidence 9876 66766666553 34567899999999976 3444443
No 57
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.90 E-value=7.7e-24 Score=254.77 Aligned_cols=249 Identities=12% Similarity=0.062 Sum_probs=169.9
Q ss_pred CCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeE
Q psy13788 697 SHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKV 776 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v 776 (1034)
..++|+|+++++.+. ++++++++||||||||++|++|+++.+.. .+.++||++||++|+.|+++.+. +..+
T Consensus 170 ~~~lpiq~~~i~~l~-~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~Qi~~~l~-------~~~v 240 (618)
T 2whx_A 170 RIGEPDYEVDEDIFR-KKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAAEMEEALR-------GLPI 240 (618)
T ss_dssp CCCCCCCCCCGGGGS-TTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCE
T ss_pred ccCCCccccCHHHHh-cCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHHHHHHHhc-------CCce
Confidence 458899888877776 89999999999999999999999988765 46899999999999999887664 2344
Q ss_pred EEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCe
Q psy13788 777 VELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNV 856 (1034)
Q Consensus 777 ~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~ 856 (1034)
. +.+... ......+..+.++|.+.+...+. ....+.++++||+||||++...+...+..+...+. ..+.
T Consensus 241 ~-~~~~~l-~~~~tp~~~i~~~t~~~l~~~l~---~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~------~~~~ 309 (618)
T 2whx_A 241 R-YQTPAV-KSDHTGREIVDLMCHATFTTRLL---SSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE------MGEA 309 (618)
T ss_dssp E-ECCTTS-SCCCCSSSCEEEEEHHHHHHHHH---HCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH------HTSC
T ss_pred e-Eecccc-eeccCCCceEEEEChHHHHHHHh---ccccccCCeEEEEECCCCCCccHHHHHHHHHHHhc------ccCc
Confidence 3 333221 11112345677788887754443 23457899999999999984345555555554331 2578
Q ss_pred EEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecC
Q psy13788 857 RLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSS 936 (1034)
Q Consensus 857 ~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s 936 (1034)
|++++|||+++. +..+.. . .+..+.+.. .++...+ +.++..+.+ ..+++||||+|
T Consensus 310 q~il~SAT~~~~--~~~~~~-~-----------~~~~~~v~~-~~~~~~~--------~~ll~~l~~--~~~~~LVF~~s 364 (618)
T 2whx_A 310 AAIFMTATPPGS--TDPFPQ-S-----------NSPIEDIER-EIPERSW--------NTGFDWITD--YQGKTVWFVPS 364 (618)
T ss_dssp EEEEECSSCTTC--CCSSCC-C-----------SSCEEEEEC-CCCSSCC--------SSSCHHHHH--CCSCEEEECSS
T ss_pred cEEEEECCCchh--hhhhhc-c-----------CCceeeecc-cCCHHHH--------HHHHHHHHh--CCCCEEEEECC
Confidence 999999999763 111111 0 010111111 1111111 112223333 25689999999
Q ss_pred hHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCc
Q psy13788 937 RRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKEN 1016 (1034)
Q Consensus 937 ~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i 1016 (1034)
++.|+.++..|.... ..+..+||+ +|+.+++ . |++|++
T Consensus 365 ~~~a~~l~~~L~~~g----------------------------------~~v~~lhg~----~R~~~l~--~--F~~g~~ 402 (618)
T 2whx_A 365 IKAGNDIANCLRKSG----------------------------------KRVIQLSRK----TFDTEYP--K--TKLTDW 402 (618)
T ss_dssp HHHHHHHHHHHHHTT----------------------------------CCEEEECTT----THHHHTT--H--HHHSCC
T ss_pred hhHHHHHHHHHHHcC----------------------------------CcEEEEChH----HHHHHHH--h--hcCCCc
Confidence 999999998886531 126788984 6777766 6 999999
Q ss_pred eEEEechhhhhccCCCC
Q psy13788 1017 QNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1017 ~VLVaT~~l~~Gv~Dfs 1033 (1034)
+|||||+++++|+ |+.
T Consensus 403 ~VLVaTdv~~rGi-Di~ 418 (618)
T 2whx_A 403 DFVVTTDISEMGA-NFR 418 (618)
T ss_dssp SEEEECGGGGTTC-CCC
T ss_pred EEEEECcHHHcCc-ccC
Confidence 9999999999999 983
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.90 E-value=7.9e-24 Score=227.23 Aligned_cols=182 Identities=15% Similarity=0.219 Sum_probs=143.1
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC-CCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP-EAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~-~~~~lvi~Pt~ 754 (1034)
++++...+++.. ++|..|+|+|.++++.++ .+++++++||||||||++|++|+++.+...+ +.++||++||+
T Consensus 49 ~l~~~l~~~l~~------~g~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr 121 (249)
T 3ber_A 49 GVTDVLCEACDQ------LGWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTR 121 (249)
T ss_dssp TCCHHHHHHHHH------TTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSH
T ss_pred CCCHHHHHHHHH------cCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCH
Confidence 555555555544 456669999999999998 7899999999999999999999998876643 57899999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccC
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~ 831 (1034)
+|+.|+++.+.+ +....++++..+.|+.....+. ..+++|+|+||+++..++.+. ....+.+++++|+||||++.
T Consensus 122 ~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~l~~~~~lViDEah~l~ 199 (249)
T 3ber_A 122 ELAFQISEQFEA-LGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT-KGFNLRALKYLVMDEADRIL 199 (249)
T ss_dssp HHHHHHHHHHHH-HHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHS-TTCCCTTCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHH-HhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CCcCccccCEEEEcChhhhh
Confidence 999999999975 4444788999999987644322 357899999999997777642 23357889999999999987
Q ss_pred C-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHh
Q psy13788 832 E-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLAT 873 (1034)
Q Consensus 832 ~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~ 873 (1034)
+ +++..+..++. ..+.+.|++++|||+++ ...+.+
T Consensus 200 ~~~~~~~l~~i~~-------~~~~~~~~l~~SAT~~~~v~~~~~ 236 (249)
T 3ber_A 200 NMDFETEVDKILK-------VIPRDRKTFLFSATMTKKVQKLQR 236 (249)
T ss_dssp HTTCHHHHHHHHH-------SSCSSSEEEEEESSCCHHHHHHHH
T ss_pred ccChHHHHHHHHH-------hCCCCCeEEEEeccCCHHHHHHHH
Confidence 6 67777766653 34567899999999986 334444
No 59
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.90 E-value=3.7e-24 Score=229.74 Aligned_cols=184 Identities=22% Similarity=0.262 Sum_probs=136.9
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC--CCCeEEEEcCc
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--PEAKVVYIAPL 753 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~--~~~~~lvi~Pt 753 (1034)
++++....++... ||..|+|+|.++++.++ .++++++.||||||||++|++|++..+... ++.++||++||
T Consensus 35 ~l~~~l~~~l~~~------g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt 107 (245)
T 3dkp_A 35 KINSRLLQNILDA------GFQMPTPIQMQAIPVML-HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPT 107 (245)
T ss_dssp CCCHHHHHHHHHT------TCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSS
T ss_pred CCCHHHHHHHHHC------CCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCC
Confidence 4555444555443 56679999999999998 789999999999999999999999888642 46789999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccc----cccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccc
Q psy13788 754 KALVKERVADWKVKFEARLKKKVVELTGDVTPDI----QAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHL 829 (1034)
Q Consensus 754 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~----~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~ 829 (1034)
++|+.|+++.+.+.+.. .+.++..+.|+..... ....+++|+|+||+++..+++.......+.+++++|+||||+
T Consensus 108 ~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~ 186 (245)
T 3dkp_A 108 RELASQIHRELIKISEG-TGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDK 186 (245)
T ss_dssp HHHHHHHHHHHHHHTTT-SCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH
T ss_pred HHHHHHHHHHHHHHhcc-cCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHH
Confidence 99999999999865543 6777777766432211 123578999999999988887543345678999999999999
Q ss_pred cCC----CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHHhHh
Q psy13788 830 LGE----DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWL 875 (1034)
Q Consensus 830 l~~----~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~~~l 875 (1034)
+.+ ++...+..++. ...+.+.|++++|||+++ ++.+|+
T Consensus 187 ~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~SAT~~~--~v~~~~ 228 (245)
T 3dkp_A 187 LFEDGKTGFRDQLASIFL------ACTSHKVRRAMFSATFAY--DVEQWC 228 (245)
T ss_dssp HHHHC--CHHHHHHHHHH------HCCCTTCEEEEEESSCCH--HHHHHH
T ss_pred hcccccccHHHHHHHHHH------hcCCCCcEEEEEeccCCH--HHHHHH
Confidence 975 23333333322 223457899999999965 444444
No 60
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.90 E-value=9e-24 Score=256.66 Aligned_cols=285 Identities=13% Similarity=0.136 Sum_probs=160.9
Q ss_pred CCChhHHHHHHHHhc----CCCcEEEEcCCCChhhHHHHHHHHHHHHhC-------CCCeEEEEcCcHHHHHHHH-HHHH
Q psy13788 698 HFNPIQTQIFHCLYH----TDNNVLLGAPTGSGKTIAAEITCFRVFKQC-------PEAKVVYIAPLKALVKERV-ADWK 765 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~----~~~~vll~apTGsGKT~~~~l~il~~l~~~-------~~~~~lvi~Pt~~L~~q~~-~~~~ 765 (1034)
.|+|+|.++++.+++ .++++++++|||+|||++++..+...+... .+.++||++|+++|+.|+. +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 499999999998764 356799999999999999877776666655 6799999999999999987 4443
Q ss_pred HHhhhhcCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhc--cccccccCcccEEEEecccccCCCChhHHHHHHH
Q psy13788 766 VKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVS 843 (1034)
Q Consensus 766 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~--~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~ 843 (1034)
. ++..+..+.++. ...+.+|+|+||+++...... +........+++||+||||++.......+..++.
T Consensus 258 -~----~~~~~~~~~~~~-----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~ 327 (590)
T 3h1t_A 258 -P----FGDARHKIEGGK-----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILE 327 (590)
T ss_dssp -T----TCSSEEECCC-------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHH
T ss_pred -h----cchhhhhhhccC-----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHH
Confidence 2 334454444432 124689999999998665431 1122334678999999999997633345555554
Q ss_pred HHHHhhhccCCCeEEEEEccCCCCH--HHHHhHhcccCCceeecCC---CCcccccEEEEe--cCC--------------
Q psy13788 844 RVNFISSYTKRNVRLVGLSTALANA--KDLATWLNITKQGMYNFRP---SVRPVPLEVHIS--GFP-------------- 902 (1034)
Q Consensus 844 rl~~l~~~~~~~~~iv~lSATl~~~--~~l~~~l~~~~~~~~~~~~---~~r~~~l~~~~~--~~~-------------- 902 (1034)
.+ ...++++||||+.+. .+...+++.... .+.+.. .....+...... ...
T Consensus 328 ~~--------~~~~~l~lTATP~~~~~~~~~~~f~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
T 3h1t_A 328 YF--------EPAFQIGMTATPLREDNRDTYRYFGNPIY-TYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRF 398 (590)
T ss_dssp HS--------TTSEEEEEESSCSCTTTHHHHHHSCSCSE-EECHHHHHHHTSSCCEEEEEEEETTCC-------------
T ss_pred hC--------CcceEEEeccccccccchhHHHHcCCceE-ecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccc
Confidence 33 246799999998763 345555542110 000000 000001111100 000
Q ss_pred ----------CCCCc------hhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChH
Q psy13788 903 ----------GKQYC------PRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDA 966 (1034)
Q Consensus 903 ----------~~~~~------~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 966 (1034)
..... .+...+.+.+.+.+......+++||||++++.|+.++..|.+........
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~--------- 469 (590)
T 3h1t_A 399 GREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRK--------- 469 (590)
T ss_dssp ----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT---------
T ss_pred ccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhcc---------
Confidence 00000 00011111233334444566899999999999999999887653321000
Q ss_pred HHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCce---EEEechhhhhccCCCC
Q psy13788 967 EMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQ---NVINRSTSANGNFDFN 1033 (1034)
Q Consensus 967 ~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~---VLVaT~~l~~Gv~Dfs 1033 (1034)
-+..+..+||+++. +|+.+++ . |++|+.+ |||||+++++|+ |+.
T Consensus 470 -----------------~~~~~~~i~g~~~~-~r~~~l~--~--F~~~~~~~~~ilvtt~~l~~Gi-Dip 516 (590)
T 3h1t_A 470 -----------------HPDYVARVTSEEGK-IGKGHLS--R--FQELETSTPVILTTSQLLTTGV-DAP 516 (590)
T ss_dssp -----------------CTTSEEECSSTTHH-HHHHHHH--H--HHCTTCCCCCEEEESSTTTTTC-CCT
T ss_pred -----------------CCCeEEEEeCCChH-HHHHHHH--H--HhCCCCCCCEEEEECChhhcCc-cch
Confidence 01125678998764 6777766 5 9998876 899999999999 975
No 61
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.90 E-value=6.7e-24 Score=223.55 Aligned_cols=175 Identities=17% Similarity=0.232 Sum_probs=137.4
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~ 754 (1034)
++++...+++.. ++|..|+|+|.++++.++ +++++++++|||+|||++|++|+++.+... .+.++||++||+
T Consensus 10 ~l~~~l~~~l~~------~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 10 PFQPFIIEAIKT------LRFYKPTEIQERIIPGAL-RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp CCCHHHHHHHHH------TTCCSCCHHHHHHHHHHH-HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHH------CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 455555555543 456669999999999998 789999999999999999999999887653 357999999999
Q ss_pred HHHHHHHHHHHHHhhhhc----CCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecc
Q psy13788 755 ALVKERVADWKVKFEARL----KKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEI 827 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~----~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEa 827 (1034)
+|+.|+++.+.+.... . +..+..+.|+....... ..+++|+|+||+++..++.. ....+.+++++|+|||
T Consensus 83 ~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEa 159 (219)
T 1q0u_A 83 ELATQIYHETLKITKF-CPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE--QALDVHTAHILVVDEA 159 (219)
T ss_dssp HHHHHHHHHHHHHHTT-SCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT--TCCCGGGCCEEEECSH
T ss_pred HHHHHHHHHHHHHhhh-cccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc--CCCCcCcceEEEEcCc
Confidence 9999999998865443 3 67888888876543322 24789999999999877763 3455788999999999
Q ss_pred cccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 828 HLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 828 H~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
|++.+ ++...+..++. ..+.+.|++++|||+++
T Consensus 160 h~~~~~~~~~~l~~i~~-------~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 160 DLMLDMGFITDVDQIAA-------RMPKDLQMLVFSATIPE 193 (219)
T ss_dssp HHHHHTTCHHHHHHHHH-------TSCTTCEEEEEESCCCG
T ss_pred hHHhhhChHHHHHHHHH-------hCCcccEEEEEecCCCH
Confidence 99876 56666655553 34567899999999976
No 62
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.90 E-value=1.3e-23 Score=222.31 Aligned_cols=175 Identities=19% Similarity=0.212 Sum_probs=134.4
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~ 754 (1034)
++++.....+.. ++|..|+|+|.++++.++ .++++++.+|||+|||++|++|+++.+... ++.++||++|++
T Consensus 20 ~l~~~l~~~l~~------~g~~~~~~~Q~~~i~~~~-~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (224)
T 1qde_A 20 ELDENLLRGVFG------YGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 92 (224)
T ss_dssp TCCHHHHHHHHH------HTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CCCHHHHHHHHH------CCCCCCcHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCH
Confidence 444444444433 356779999999999998 788999999999999999999999887553 467999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCcccc--ccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQ--AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~ 832 (1034)
+|+.|+++.+.+.. ...++++..+.|+...... ....++|+|+||+++...+.+ ....+.+++++|+||||++.+
T Consensus 93 ~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~iViDEah~~~~ 169 (224)
T 1qde_A 93 ELALQIQKVVMALA-FHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLS 169 (224)
T ss_dssp HHHHHHHHHHHHHT-TTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHh-cccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEcChhHHhh
Confidence 99999999988544 3468889989887654432 244689999999999777763 345578899999999999876
Q ss_pred -CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 833 -DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 833 -~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
+++..+..++. ..+.+.|++++|||+++
T Consensus 170 ~~~~~~l~~i~~-------~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 170 SGFKEQIYQIFT-------LLPPTTQVVLLSATMPN 198 (224)
T ss_dssp TTCHHHHHHHHH-------HSCTTCEEEEEESSCCH
T ss_pred hhhHHHHHHHHH-------hCCccCeEEEEEeecCH
Confidence 66666665553 34567899999999987
No 63
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.90 E-value=9.8e-24 Score=225.05 Aligned_cols=175 Identities=15% Similarity=0.192 Sum_probs=133.0
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC-CCCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC-PEAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~-~~~~~lvi~Pt~ 754 (1034)
++++....++.. ++|..|+|+|.++++.++ .++++++++|||||||++|++|+++.+... ++.++||++|++
T Consensus 36 ~l~~~l~~~l~~------~g~~~~~~~Q~~ai~~i~-~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 108 (237)
T 3bor_A 36 NLKESLLRGIYA------YGFEKPSAIQQRAIIPCI-KGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTR 108 (237)
T ss_dssp CCCHHHHHHHHH------HTCCSCCHHHHHHHHHHH-TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHH------CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcH
Confidence 444544454443 456679999999999998 788999999999999999999999887543 467999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc----cCCCcEEEECHhhHHHHHhccccccccCcccEEEEeccccc
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA----ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~----~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l 830 (1034)
+|+.|+++.+.+ +....+..+..+.|+....... ...++|+|+||+++..++.+ ....+.+++++|+||||++
T Consensus 109 ~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~ 185 (237)
T 3bor_A 109 ELAQQIQKVILA-LGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--RYLSPKWIKMFVLDEADEM 185 (237)
T ss_dssp HHHHHHHHHHHH-HTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHH
T ss_pred HHHHHHHHHHHH-HhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--CCcCcccCcEEEECCchHh
Confidence 999999999885 4444678888888876543322 12389999999999777763 3445788999999999998
Q ss_pred CC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 831 GE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 831 ~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
.+ +++..+..++.. .+.+.|++++|||+++
T Consensus 186 ~~~~~~~~l~~i~~~-------~~~~~~~i~~SAT~~~ 216 (237)
T 3bor_A 186 LSRGFKDQIYEIFQK-------LNTSIQVVLLSATMPT 216 (237)
T ss_dssp HHTTCHHHHHHHHHH-------SCTTCEEEEECSSCCH
T ss_pred hccCcHHHHHHHHHh-------CCCCCeEEEEEEecCH
Confidence 65 676666665533 3567899999999986
No 64
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.90 E-value=1.1e-23 Score=219.70 Aligned_cols=181 Identities=21% Similarity=0.238 Sum_probs=140.1
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh----CCCCeEEEEc
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ----CPEAKVVYIA 751 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~----~~~~~~lvi~ 751 (1034)
++++.....+.. .+|..|+|+|.++++.++ +++++++.+|||+|||++|.+|++..+.. .++.+++|++
T Consensus 7 ~l~~~l~~~l~~------~~~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~ 79 (207)
T 2gxq_A 7 PLKPEILEALHG------RGLTTPTPIQAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLT 79 (207)
T ss_dssp CCCHHHHHHHHH------TTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEEC
T ss_pred CCCHHHHHHHHH------cCCCCCCHHHHHHHHHHc-CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEE
Confidence 444444454543 356669999999999998 78999999999999999999999988753 3468999999
Q ss_pred CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc---cCCCcEEEECHhhHHHHHhccccccccCcccEEEEeccc
Q psy13788 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA---ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIH 828 (1034)
Q Consensus 752 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH 828 (1034)
|+++|+.|+++.+.+.+.. .++..+.|+....... ..+++|+|+||+++..++.. ....+.+++++|+||||
T Consensus 80 P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--GVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--TSSCCTTCSEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--CCcchhhceEEEEEChh
Confidence 9999999999998865543 6778888876543221 34789999999999877763 44567889999999999
Q ss_pred ccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHhHh
Q psy13788 829 LLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLATWL 875 (1034)
Q Consensus 829 ~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~~l 875 (1034)
++.+ +++..++.++. ..+.+.|++++|||+++ ..++.++.
T Consensus 155 ~~~~~~~~~~~~~i~~-------~~~~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLS-------ATPPSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp HHHHTTCHHHHHHHHH-------TSCTTSEEEEECSSCCHHHHHHHHHH
T ss_pred HhhccchHHHHHHHHH-------hCCccCeEEEEEEecCHHHHHHHHHH
Confidence 9865 67666666553 34567899999999987 34555543
No 65
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.90 E-value=5.3e-23 Score=245.15 Aligned_cols=132 Identities=17% Similarity=0.100 Sum_probs=105.8
Q ss_pred ccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhc
Q psy13788 693 LYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARL 772 (1034)
Q Consensus 693 ~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~ 772 (1034)
.+|+ .|+|+|..+++.++ .|+ +..|+||+|||++|.+|++..... +..++|++||++||.|..+.+. .+...+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll-~G~--Iaem~TGeGKTLa~~LP~~l~aL~--g~~v~VvTpTreLA~Qdae~m~-~l~~~l 179 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALH-LGN--VAEMKTGEGKTLTCVLPAYLNALA--GNGVHIVTVNDYLAKRDSEWMG-RVHRFL 179 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHH-TTE--EEECCTTSCHHHHTHHHHHHHHTT--TSCEEEEESSHHHHHHHHHHHH-HHHHHT
T ss_pred HcCC-CCCHHHHHHHHhHh-cCC--EEEecCCCccHHHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHH-HHHhhc
Confidence 3567 69999999999887 665 999999999999999999754333 6789999999999999877766 455568
Q ss_pred CCeEEEEcCCCCccccc-cCCCcEEEECHhhH-HHHHhcc----ccccccCcccEEEEecccccC
Q psy13788 773 KKKVVELTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRSW----QNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 773 ~~~v~~~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~~----~~~~~l~~l~~lViDEaH~l~ 831 (1034)
|++++.+.|+.+...+. ..++||+|+||+++ ..+++.. .....++.+.++|+||||.++
T Consensus 180 GLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 180 GLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHH
Confidence 99999999987754333 23689999999998 4555532 123456789999999999986
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=2.2e-23 Score=219.73 Aligned_cols=182 Identities=16% Similarity=0.217 Sum_probs=138.3
Q ss_pred cCCCCCCCccCccccccccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC-CCeEEEEcCcH
Q psy13788 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP-EAKVVYIAPLK 754 (1034)
Q Consensus 676 ~l~~~~~~~l~~~~~~~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~-~~~~lvi~Pt~ 754 (1034)
++++....++.. ++|..|+|+|.++++.++ .++++++++|||+|||++|++|++..+.... +.++||++|++
T Consensus 20 ~l~~~l~~~l~~------~g~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 20 LLKPELLRAIVD------CGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp CCCHHHHHHHHH------TTCCCCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCCHHHHHHHHH------CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 455555555544 356669999999999998 6889999999999999999999998876543 45999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc----cCCCcEEEECHhhHHHHHhccccccccCcccEEEEeccccc
Q psy13788 755 ALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA----ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 755 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~----~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l 830 (1034)
+|+.|+++.+.+......+.++..+.|+....... ...++|+|+||+++..+++. ....+.+++++|+||||++
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh--CCCCcccCCEEEEcCHHHH
Confidence 99999999988654432378899999987643322 13579999999999887763 3455789999999999998
Q ss_pred CCC--ChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC-HHHHHh
Q psy13788 831 GED--RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN-AKDLAT 873 (1034)
Q Consensus 831 ~~~--~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~-~~~l~~ 873 (1034)
.+. +...+..++ ...+.+.|++++|||+++ ...+.+
T Consensus 171 ~~~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 171 LEQLDMRRDVQEIF-------RMTPHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp HSSHHHHHHHHHHH-------HTSCSSSEEEEEESCCCTTTHHHHH
T ss_pred hcccCcHHHHHHHH-------HhCCCcCeEEEEEeecCHHHHHHHH
Confidence 752 323333222 345567899999999987 344444
No 67
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.89 E-value=1.2e-23 Score=254.59 Aligned_cols=249 Identities=15% Similarity=0.104 Sum_probs=156.7
Q ss_pred CCChhHH-----HHHHHHh-----cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHH
Q psy13788 698 HFNPIQT-----QIFHCLY-----HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVK 767 (1034)
Q Consensus 698 ~~~~~Q~-----~ai~~l~-----~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~ 767 (1034)
.|+|+|. ++++.++ ..+++++++||||||||++|++|+++.+.. .+.+++|++||++|+.|+++.+..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lilaPTr~La~Q~~~~l~~- 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLAPTRVVAAEMAEALRG- 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTT-
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHHHhc-
Confidence 6999999 9998765 378999999999999999999999988665 468999999999999998887652
Q ss_pred hhhhcCCeEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHH
Q psy13788 768 FEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNF 847 (1034)
Q Consensus 768 ~~~~~~~~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~ 847 (1034)
+++. ...+.... ....+.-+-+.+.+.+...+ .....+.+++++|+||||++. .........+..
T Consensus 293 ----~~i~--~~~~~l~~--v~tp~~ll~~l~~~~l~~~l---~~~~~l~~l~lvViDEaH~~~----~~~~~~~~~l~~ 357 (673)
T 2wv9_A 293 ----LPVR--YLTPAVQR--EHSGNEIVDVMCHATLTHRL---MSPLRVPNYNLFVMDEAHFTD----PASIAARGYIAT 357 (673)
T ss_dssp ----SCCE--ECCC---C--CCCSCCCEEEEEHHHHHHHH---HSSSCCCCCSEEEEESTTCCC----HHHHHHHHHHHH
T ss_pred ----CCee--eecccccc--cCCHHHHHHHHHhhhhHHHH---hcccccccceEEEEeCCcccC----ccHHHHHHHHHH
Confidence 2222 11111100 00011223333444332222 223467899999999999983 111112222222
Q ss_pred hhhccCCCeEEEEEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCC
Q psy13788 848 ISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPE 927 (1034)
Q Consensus 848 l~~~~~~~~~iv~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 927 (1034)
+. ...+.++++||||++.. +..+.... .++......++.... ..++..+.+ .+
T Consensus 358 ~~--~~~~~~vl~~SAT~~~~-------------i~~~~~~~--~~i~~v~~~~~~~~~--------~~~l~~l~~--~~ 410 (673)
T 2wv9_A 358 RV--EAGEAAAIFMTATPPGT-------------SDPFPDTN--SPVHDVSSEIPDRAW--------SSGFEWITD--YA 410 (673)
T ss_dssp HH--HTTSCEEEEECSSCTTC-------------CCSSCCCS--SCEEEEECCCCSSCC--------SSCCHHHHS--CC
T ss_pred hc--cccCCcEEEEcCCCChh-------------hhhhcccC--CceEEEeeecCHHHH--------HHHHHHHHh--CC
Confidence 11 12578999999999742 11111111 122211111111111 112233333 46
Q ss_pred CCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccc
Q psy13788 928 KPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPK 1007 (1034)
Q Consensus 928 ~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~ 1007 (1034)
+++||||+++++|+.++..|... +..+..+||+ +|+.+++
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~----------------------------------g~~v~~lHg~----eR~~v~~-- 450 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRA----------------------------------GKRVIQLNRK----SYDTEYP-- 450 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----------------------------------TCCEEEECSS----SHHHHGG--
T ss_pred CCEEEEECCHHHHHHHHHHHHhC----------------------------------CCeEEEeChH----HHHHHHH--
Confidence 79999999999999988877542 1237889993 7877877
Q ss_pred hhHhhcCCceEEEechhhhhccCCCC
Q psy13788 1008 LAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1008 l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
. |++|+++|||||+++++|| |+.
T Consensus 451 ~--F~~g~~~VLVaTdv~e~GI-Dip 473 (673)
T 2wv9_A 451 K--CKNGDWDFVITTDISEMGA-NFG 473 (673)
T ss_dssp G--GGTCCCSEEEECGGGGTTC-CCC
T ss_pred H--HHCCCceEEEECchhhcce-eeC
Confidence 6 9999999999999999999 984
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.89 E-value=1.4e-23 Score=249.49 Aligned_cols=238 Identities=17% Similarity=0.093 Sum_probs=157.4
Q ss_pred ChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEE
Q psy13788 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVEL 779 (1034)
Q Consensus 700 ~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~ 779 (1034)
.+.|.++++.+ .++++++++||||||||.+|.+|+++. +.+++|++|||+|+.|+++++.+.+ +..+...
T Consensus 219 ~~~q~~i~~~L-~~~~~vlv~ApTGSGKT~a~~l~ll~~-----g~~vLVl~PTReLA~Qia~~l~~~~----g~~vg~~ 288 (666)
T 3o8b_A 219 FTDNSSPPAVP-QSFQVAHLHAPTGSGKSTKVPAAYAAQ-----GYKVLVLNPSVAATLGFGAYMSKAH----GIDPNIR 288 (666)
T ss_dssp CCCCCSCCCCC-SSCEEEEEECCTTSCTTTHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHH----SCCCEEE
T ss_pred HHHHHHHHHHH-HcCCeEEEEeCCchhHHHHHHHHHHHC-----CCeEEEEcchHHHHHHHHHHHHHHh----CCCeeEE
Confidence 34444444444 478899999999999999999988763 6799999999999999988766544 4566677
Q ss_pred cCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEE
Q psy13788 780 TGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLV 859 (1034)
Q Consensus 780 ~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv 859 (1034)
.|+.. ...+++|+|+||+++. . .....+.+++++|+||||++..++...+..++..+. ......++
T Consensus 289 vG~~~----~~~~~~IlV~TPGrLl---~--~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~-----~~~~~lli 354 (666)
T 3o8b_A 289 TGVRT----ITTGAPVTYSTYGKFL---A--DGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAE-----TAGARLVV 354 (666)
T ss_dssp CSSCE----ECCCCSEEEEEHHHHH---H--TTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTT-----TTTCSEEE
T ss_pred ECcEe----ccCCCCEEEECcHHHH---h--CCCcccCcccEEEEccchhcCccHHHHHHHHHHhhh-----hcCCceEE
Confidence 77644 2347899999999972 2 234557789999999998876445444554443331 11233477
Q ss_pred EEccCCCCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHH
Q psy13788 860 GLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQ 939 (1034)
Q Consensus 860 ~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~ 939 (1034)
++|||+++. +......+. .+.. .+... ......... + ....++++||||+++++
T Consensus 355 l~SAT~~~~------i~~~~p~i~-----------~v~~-~~~~~--i~~~~~~~~-----l-~~~~~~~vLVFv~Tr~~ 408 (666)
T 3o8b_A 355 LATATPPGS------VTVPHPNIE-----------EVAL-SNTGE--IPFYGKAIP-----I-EAIRGGRHLIFCHSKKK 408 (666)
T ss_dssp EEESSCTTC------CCCCCTTEE-----------EEEC-BSCSS--EEETTEEEC-----G-GGSSSSEEEEECSCHHH
T ss_pred EECCCCCcc------cccCCcceE-----------EEee-cccch--hHHHHhhhh-----h-hhccCCcEEEEeCCHHH
Confidence 889999862 111110110 0100 01000 000000000 1 12256799999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEE
Q psy13788 940 TRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNV 1019 (1034)
Q Consensus 940 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VL 1019 (1034)
|+.+++.|.+. +..+..+||+|++++ |+++..+||
T Consensus 409 ae~la~~L~~~----------------------------------g~~v~~lHG~l~q~e-----------r~~~~~~VL 443 (666)
T 3o8b_A 409 CDELAAKLSGL----------------------------------GINAVAYYRGLDVSV-----------IPTIGDVVV 443 (666)
T ss_dssp HHHHHHHHHTT----------------------------------TCCEEEECTTSCGGG-----------SCSSSCEEE
T ss_pred HHHHHHHHHhC----------------------------------CCcEEEecCCCCHHH-----------HHhCCCcEE
Confidence 99998877542 123789999998763 344555999
Q ss_pred EechhhhhccCCCC
Q psy13788 1020 INRSTSANGNFDFN 1033 (1034)
Q Consensus 1020 VaT~~l~~Gv~Dfs 1033 (1034)
|||+++++|| |+.
T Consensus 444 VATdVaerGI-DId 456 (666)
T 3o8b_A 444 VATDALMTGY-TGD 456 (666)
T ss_dssp EECTTHHHHC-CCC
T ss_pred EECChHHccC-CCC
Confidence 9999999999 974
No 69
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.89 E-value=1.5e-22 Score=234.86 Aligned_cols=234 Identities=17% Similarity=0.162 Sum_probs=152.9
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCC
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISS 792 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 792 (1034)
.+++++++||||||||++|++|+++.+.. .+.+++|++||++|+.|+++.+. +..+...+|.... ....+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~--~~~~~ 70 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-KRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS--ERTGN 70 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC-----------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc--cCCCC
Confidence 36899999999999999999999966554 36799999999999999776553 4566655554221 11124
Q ss_pred CcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHHHH
Q psy13788 793 ASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLA 872 (1034)
Q Consensus 793 ~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~l~ 872 (1034)
..+.+.|.+.+...+. ....+.+++++|+||+|++. .........++.+. ...+.+++++|||+++.
T Consensus 71 ~~~~~~~~~~l~~~l~---~~~~~~~l~~vViDEaH~~~----~~~~~~~~~l~~~~--~~~~~~~l~~SAT~~~~---- 137 (431)
T 2v6i_A 71 EIVDFMCHSTFTMKLL---QGVRVPNYNLYIMDEAHFLD----PASVAARGYIETRV--SMGDAGAIFMTATPPGT---- 137 (431)
T ss_dssp CSEEEEEHHHHHHHHH---HTCCCCCCSEEEEESTTCCS----HHHHHHHHHHHHHH--HTTSCEEEEEESSCTTC----
T ss_pred ceEEEEchHHHHHHHh---cCccccCCCEEEEeCCccCC----ccHHHHHHHHHHHh--hCCCCcEEEEeCCCCcc----
Confidence 4567778887744333 24457899999999999973 22222233333221 24578999999999761
Q ss_pred hHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHh
Q psy13788 873 TWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILA 952 (1034)
Q Consensus 873 ~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~ 952 (1034)
+..+.+... ++......++.... ..+++.+... ++++||||++++.|+.++..|...
T Consensus 138 ---------~~~~~~~~~--~i~~~~~~~~~~~~--------~~~~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~-- 194 (431)
T 2v6i_A 138 ---------TEAFPPSNS--PIIDEETRIPDKAW--------NSGYEWITEF--DGRTVWFVHSIKQGAEIGTCLQKA-- 194 (431)
T ss_dssp ---------CCSSCCCSS--CCEEEECCCCSSCC--------SSCCHHHHSC--SSCEEEECSSHHHHHHHHHHHHHT--
T ss_pred ---------hhhhcCCCC--ceeeccccCCHHHH--------HHHHHHHHcC--CCCEEEEeCCHHHHHHHHHHHHHc--
Confidence 111111111 11111111111111 1122334432 568999999999999998887653
Q ss_pred ccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCC
Q psy13788 953 CETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDF 1032 (1034)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Df 1032 (1034)
+..+..+||+ +|+.+++ . |++|+++|||||+++++|+ |+
T Consensus 195 --------------------------------~~~v~~lhg~----~r~~~~~--~--f~~g~~~vLVaT~v~e~Gi-Di 233 (431)
T 2v6i_A 195 --------------------------------GKKVLYLNRK----TFESEYP--K--CKSEKWDFVITTDISEMGA-NF 233 (431)
T ss_dssp --------------------------------TCCEEEESTT----THHHHTT--H--HHHSCCSEEEECGGGGTSC-CC
T ss_pred --------------------------------CCeEEEeCCc----cHHHHHH--h--hcCCCCeEEEECchHHcCc-cc
Confidence 1237889997 5667777 6 9999999999999999999 98
Q ss_pred C
Q psy13788 1033 N 1033 (1034)
Q Consensus 1033 s 1033 (1034)
.
T Consensus 234 p 234 (431)
T 2v6i_A 234 K 234 (431)
T ss_dssp C
T ss_pred C
Confidence 4
No 70
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.89 E-value=8e-23 Score=246.40 Aligned_cols=231 Identities=17% Similarity=0.166 Sum_probs=166.5
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccc-cC
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA-IS 791 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-~~ 791 (1034)
.+++++++||||||||+ ++++.+.. ..+.+|++||++|+.|+++++.+ .|+++..++|+....... -.
T Consensus 154 ~rk~vlv~apTGSGKT~----~al~~l~~--~~~gl~l~PtR~LA~Qi~~~l~~-----~g~~v~lltG~~~~iv~TpGr 222 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY----HAIQKYFS--AKSGVYCGPLKLLAHEIFEKSNA-----AGVPCDLVTGEERVTVQPNGK 222 (677)
T ss_dssp CCEEEEEECCTTSSHHH----HHHHHHHH--SSSEEEEESSHHHHHHHHHHHHH-----TTCCEEEECSSCEECCSTTCC
T ss_pred CCCEEEEEcCCCCCHHH----HHHHHHHh--cCCeEEEeCHHHHHHHHHHHHHh-----cCCcEEEEECCeeEEecCCCc
Confidence 67899999999999999 33444443 24569999999999999998875 478899999976542211 12
Q ss_pred CCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC-CChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHHH
Q psy13788 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKD 870 (1034)
Q Consensus 792 ~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~~ 870 (1034)
..+++++|++.+. ....++++|+||||++.+ +++..++.++.++. ....+++++|||.+....
T Consensus 223 ~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~------~~~i~il~~SAT~~~i~~ 286 (677)
T 3rc3_A 223 QASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC------AEEVHLCGEPAAIDLVME 286 (677)
T ss_dssp CCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC------EEEEEEEECGGGHHHHHH
T ss_pred ccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHccC------ccceEEEeccchHHHHHH
Confidence 4789999987542 246789999999999987 78888887775442 257899999999765555
Q ss_pred HHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHH
Q psy13788 871 LATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITI 950 (1034)
Q Consensus 871 l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~ 950 (1034)
+..+.+.. +.+....+..++......+ ..+... .+..+|||+|+++|+.++..|...
T Consensus 287 l~~~~~~~----~~v~~~~r~~~l~~~~~~l-----------------~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~ 343 (677)
T 3rc3_A 287 LMYTTGEE----VEVRDYKRLTPISVLDHAL-----------------ESLDNL--RPGDCIVCFSKNDIYSVSRQIEIR 343 (677)
T ss_dssp HHHHHTCC----EEEEECCCSSCEEECSSCC-----------------CSGGGC--CTTEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHhcCCc----eEEEEeeecchHHHHHHHH-----------------HHHHhc--CCCCEEEEcCHHHHHHHHHHHHhc
Confidence 55554322 1112222333333211100 001111 245699999999999988877652
Q ss_pred HhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhc--CCceEEEechhhhhc
Q psy13788 951 LACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSS--KENQNVINRSTSANG 1028 (1034)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~--g~i~VLVaT~~l~~G 1028 (1034)
+.+|..+||+|++++|+.+++ . |++ |+++|||||+++++|
T Consensus 344 ----------------------------------g~~v~~lHG~L~~~~R~~~~~--~--F~~~~g~~~VLVATdi~e~G 385 (677)
T 3rc3_A 344 ----------------------------------GLESAVIYGSLPPGTKLAQAK--K--FNDPNDPCKILVATDAIGMG 385 (677)
T ss_dssp ----------------------------------TCCCEEECTTSCHHHHHHHHH--H--HHCTTSSCCEEEECGGGGSS
T ss_pred ----------------------------------CCCeeeeeccCCHHHHHHHHH--H--HHccCCCeEEEEeCcHHHCC
Confidence 234899999999999999988 7 999 899999999999999
Q ss_pred cCCC
Q psy13788 1029 NFDF 1032 (1034)
Q Consensus 1029 v~Df 1032 (1034)
| |+
T Consensus 386 l-Di 388 (677)
T 3rc3_A 386 L-NL 388 (677)
T ss_dssp C-CC
T ss_pred c-Cc
Confidence 9 97
No 71
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.89 E-value=5e-23 Score=239.42 Aligned_cols=229 Identities=13% Similarity=0.101 Sum_probs=141.7
Q ss_pred cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccC
Q psy13788 712 HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 791 (1034)
.++++++++||||||||++|++|+++.+... +.+++|++||++|+.|+++.+.. ..+....+...
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-~~~~lil~Ptr~La~Q~~~~l~~-------~~v~~~~~~~~------- 70 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARR-RLRTLVLAPTRVVLSEMKEAFHG-------LDVKFHTQAFS------- 70 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHTTT-------SCEEEESSCCC-------
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-CCeEEEEcchHHHHHHHHHHHhc-------CCeEEecccce-------
Confidence 3789999999999999999999999877653 67999999999999998887652 23332222110
Q ss_pred CCcEEEECHhhHHHH------HhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCC
Q psy13788 792 SASVIVTTPEKWDGV------SRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTAL 865 (1034)
Q Consensus 792 ~~~IiV~Tpe~l~~l------~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl 865 (1034)
.++||+++..+ ...+.....+.+++++|+||||++...+...+..+.. +. ...+.++++||||+
T Consensus 71 ----~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~----~~--~~~~~~~l~~SAT~ 140 (440)
T 1yks_A 71 ----AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAH----RA--RANESATILMTATP 140 (440)
T ss_dssp ----CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHH----HH--HTTSCEEEEECSSC
T ss_pred ----eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHH----Hh--ccCCceEEEEeCCC
Confidence 25566544211 1122233457899999999999983222222222221 11 13578999999999
Q ss_pred CCHHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHH
Q psy13788 866 ANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAI 945 (1034)
Q Consensus 866 ~~~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~ 945 (1034)
++. +..+.. . +.++.......+.... ...+..+.+. ++++||||++++.|+.++.
T Consensus 141 ~~~--~~~~~~-----------~--~~~~~~~~~~~~~~~~--------~~~~~~l~~~--~~~~lVF~~s~~~a~~l~~ 195 (440)
T 1yks_A 141 PGT--SDEFPH-----------S--NGEIEDVQTDIPSEPW--------NTGHDWILAD--KRPTAWFLPSIRAANVMAA 195 (440)
T ss_dssp TTC--CCSSCC-----------C--SSCEEEEECCCCSSCC--------SSSCHHHHHC--CSCEEEECSCHHHHHHHHH
T ss_pred Cch--hhhhhh-----------c--CCCeeEeeeccChHHH--------HHHHHHHHhc--CCCEEEEeCCHHHHHHHHH
Confidence 652 111110 0 1111111111111111 1112233332 5799999999999999998
Q ss_pred HHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhh
Q psy13788 946 DLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTS 1025 (1034)
Q Consensus 946 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l 1025 (1034)
.|... +..+..+|| ++|+.+++ . |++|+++|||||+++
T Consensus 196 ~L~~~----------------------------------~~~v~~lhg----~~R~~~~~--~--F~~g~~~vLVaT~v~ 233 (440)
T 1yks_A 196 SLRKA----------------------------------GKSVVVLNR----KTFEREYP--T--IKQKKPDFILATDIA 233 (440)
T ss_dssp HHHHT----------------------------------TCCEEECCS----SSCC------------CCCSEEEESSST
T ss_pred HHHHc----------------------------------CCCEEEecc----hhHHHHHh--h--hcCCCceEEEECChh
Confidence 87653 123788999 46777766 6 999999999999999
Q ss_pred hhccCCCC
Q psy13788 1026 ANGNFDFN 1033 (1034)
Q Consensus 1026 ~~Gv~Dfs 1033 (1034)
++|+ |+.
T Consensus 234 e~Gi-Dip 240 (440)
T 1yks_A 234 EMGA-NLC 240 (440)
T ss_dssp TCCT-TCC
T ss_pred heee-ccC
Confidence 9999 984
No 72
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.88 E-value=9.9e-23 Score=238.46 Aligned_cols=239 Identities=16% Similarity=0.121 Sum_probs=150.9
Q ss_pred HHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccc
Q psy13788 708 HCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDI 787 (1034)
Q Consensus 708 ~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 787 (1034)
+.++.++++++++||||||||++|++|+++.+.. .+.++||++||++|+.|+++.+. |..+....+.....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~- 85 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQRE- 85 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccC-
Confidence 4455688999999999999999999999987765 36899999999999999888775 23333322221110
Q ss_pred cccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 788 QAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 788 ~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
...+..+.++|.+.+...+. ....+.++++||+||||.+...+...+..+..+ ....+.|++++|||++.
T Consensus 86 -~t~~~~i~~~~~~~l~~~l~---~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~------~~~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 86 -HQGNEIVDVMCHATLTHRLM---SPNRVPNYNLFVMDEAHFTDPASIAARGYIATK------VELGEAAAIFMTATPPG 155 (459)
T ss_dssp ---CCCSEEEEEHHHHHHHHH---SCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHH------HHTTSCEEEEECSSCTT
T ss_pred -CCCCcEEEEEchHHHHHHhh---ccccccCCcEEEEECCccCCchhhHHHHHHHHH------hccCCccEEEEEcCCCc
Confidence 11234577788887644333 235578999999999998632111111111111 12357899999999975
Q ss_pred HHHHHhHhcccCCceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhhCCCCCeEEEecChHHHHHHHHHH
Q psy13788 868 AKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDL 947 (1034)
Q Consensus 868 ~~~l~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L 947 (1034)
. +. .+.... .++.......+...+.. .+..+... .+++||||+|++.|+.++..|
T Consensus 156 ~--~~-----------~~~~~~--~pi~~~~~~~~~~~~~~--------~~~~l~~~--~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 156 T--TD-----------PFPDSN--APIHDLQDEIPDRAWSS--------GYEWITEY--AGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp C--CC-----------SSCCCS--SCEEEEECCCCSSCCSS--------CCHHHHHC--CSCEEEECSCHHHHHHHHHHH
T ss_pred c--hh-----------hhccCC--CCeEEecccCCcchhHH--------HHHHHHhc--CCCEEEEeCChHHHHHHHHHH
Confidence 2 11 111111 12222112222211111 12233332 568999999999999998887
Q ss_pred HHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhh
Q psy13788 948 ITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSAN 1027 (1034)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~ 1027 (1034)
... +..+..+||. +|+.+++ . |++|+++|||||+++++
T Consensus 211 ~~~----------------------------------g~~v~~lh~~----~R~~~~~--~--f~~g~~~iLVaT~v~~~ 248 (459)
T 2z83_A 211 QRA----------------------------------GKKVIQLNRK----SYDTEYP--K--CKNGDWDFVITTDISEM 248 (459)
T ss_dssp HHT----------------------------------TCCEEEESTT----CCCCCGG--G--SSSCCCSEEEESSCC--
T ss_pred Hhc----------------------------------CCcEEecCHH----HHHHHHh--h--ccCCCceEEEECChHHh
Confidence 653 1226778884 6777766 6 99999999999999999
Q ss_pred ccCCCC
Q psy13788 1028 GNFDFN 1033 (1034)
Q Consensus 1028 Gv~Dfs 1033 (1034)
|+ |+.
T Consensus 249 Gi-Dip 253 (459)
T 2z83_A 249 GA-NFG 253 (459)
T ss_dssp -C-CCS
T ss_pred Ce-ecC
Confidence 99 986
No 73
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.83 E-value=3.3e-20 Score=235.13 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=109.7
Q ss_pred CCChhHHHHHHHHhc-CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeE
Q psy13788 698 HFNPIQTQIFHCLYH-TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKV 776 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~-~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v 776 (1034)
+|+|+|.+++..++. .+.+++++++||+|||++++..+...+...+..++|||+|+ +|+.|+..++.+.| +.++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f----~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF----NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS----CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh----CCCE
Confidence 499999999987763 34579999999999999999988888877666799999999 99999999887655 4666
Q ss_pred EEEcCCCCcc-----ccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCC--hhHHHHHHHHHHHhh
Q psy13788 777 VELTGDVTPD-----IQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDR--GPVLEVIVSRVNFIS 849 (1034)
Q Consensus 777 ~~~~g~~~~~-----~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~--~~~~~~il~rl~~l~ 849 (1034)
..+.|+.... .......+|+|+|++.+...... .......++++||+||||++.... .......+..+
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L---- 302 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL---- 302 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHH----
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHH----
Confidence 6666543211 12234679999999987432111 111223578999999999997521 11112222222
Q ss_pred hccCCCeEEEEEccCCC
Q psy13788 850 SYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 850 ~~~~~~~~iv~lSATl~ 866 (1034)
.....++++||||+.
T Consensus 303 --~~~~~~~L~LTATPi 317 (968)
T 3dmq_A 303 --AEHVPGVLLLTATPE 317 (968)
T ss_dssp --HTTCSSEEESCSSCS
T ss_pred --hhcCCcEEEEEcCCc
Confidence 113446899999974
No 74
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.82 E-value=8.5e-20 Score=217.30 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=107.2
Q ss_pred CCChhHHHHHHHHh---cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 698 HFNPIQTQIFHCLY---HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~---~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
.|+|+|.+++..+. ..+.+++++++||+|||++++..+.......+..++|||+| .+|+.|+.+++.+.+. +.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~---~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAP---HL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCT---TS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCC---Cc
Confidence 39999999987653 36788999999999999998776666655556689999999 5689999998886443 36
Q ss_pred eEEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCC
Q psy13788 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKR 854 (1034)
Q Consensus 775 ~v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~ 854 (1034)
++..++|+... .....++|+|+||+++..... .....+++||+||||++.+.....+. .+.. . .
T Consensus 113 ~v~~~~g~~~~--~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~~~~~~-~l~~-------l-~ 176 (500)
T 1z63_A 113 RFAVFHEDRSK--IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFK-AVKE-------L-K 176 (500)
T ss_dssp CEEECSSSTTS--CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHHH-HHHT-------S-C
T ss_pred eEEEEecCchh--ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHhHHHHH-HHHh-------h-c
Confidence 77777776532 224568999999998843221 12246789999999999763222222 2211 1 2
Q ss_pred CeEEEEEccCCCC
Q psy13788 855 NVRLVGLSTALAN 867 (1034)
Q Consensus 855 ~~~iv~lSATl~~ 867 (1034)
..+.+++|||+..
T Consensus 177 ~~~~l~LTaTP~~ 189 (500)
T 1z63_A 177 SKYRIALTGTPIE 189 (500)
T ss_dssp EEEEEEECSSCST
T ss_pred cCcEEEEecCCCC
Confidence 4567999999753
No 75
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=187.89 Aligned_cols=162 Identities=22% Similarity=0.317 Sum_probs=110.6
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC----CCCeEEEEcCcHHHHHHH-HHHHHHHhhhhc
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC----PEAKVVYIAPLKALVKER-VADWKVKFEARL 772 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~----~~~~~lvi~Pt~~L~~q~-~~~~~~~~~~~~ 772 (1034)
.|+|+|.++++.++ .++++++.+|||+|||+++++++...+... .+.++||++|+++|+.|+ .+.+. .+.. .
T Consensus 33 ~l~~~Q~~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~~~-~ 109 (216)
T 3b6e_A 33 QLRPYQMEVAQPAL-EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ-PFLK-K 109 (216)
T ss_dssp CCCHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH-HHHT-T
T ss_pred CchHHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH-HHhc-c
Confidence 49999999999998 678999999999999999999998776542 368999999999999994 44444 4443 2
Q ss_pred CCeEEEEcCCCCcccc---ccCCCcEEEECHhhHHHHHhcccc----ccccCcccEEEEecccccCCCChhHHHHHHHHH
Q psy13788 773 KKKVVELTGDVTPDIQ---AISSASVIVTTPEKWDGVSRSWQN----RNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRV 845 (1034)
Q Consensus 773 ~~~v~~~~g~~~~~~~---~~~~~~IiV~Tpe~l~~l~~~~~~----~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl 845 (1034)
+.++..+.|+...... ...+++|+|+||+++...+..... ...+.++++||+||||++.+. ..+..++..+
T Consensus 110 ~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~--~~~~~~~~~~ 187 (216)
T 3b6e_A 110 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE--AVYNNIMRHY 187 (216)
T ss_dssp TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---------CHHHHHHHH
T ss_pred CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC--CcHHHHHHHH
Confidence 6788888887654432 123689999999999777764321 145688999999999999752 1222332222
Q ss_pred HHhh-h---------ccCCCeEEEEEccC
Q psy13788 846 NFIS-S---------YTKRNVRLVGLSTA 864 (1034)
Q Consensus 846 ~~l~-~---------~~~~~~~iv~lSAT 864 (1034)
.... . ...+..++++||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 1100 0 11257899999998
No 76
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.79 E-value=8.1e-19 Score=220.25 Aligned_cols=152 Identities=17% Similarity=0.215 Sum_probs=104.8
Q ss_pred CCChhHHHHHHHHhc-------------CCCcEEEEcCCCChhhHHHHHHHHHHHHhCC-CCeEEEEcCcHHHHHHHHHH
Q psy13788 698 HFNPIQTQIFHCLYH-------------TDNNVLLGAPTGSGKTIAAEITCFRVFKQCP-EAKVVYIAPLKALVKERVAD 763 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~-------------~~~~vll~apTGsGKT~~~~l~il~~l~~~~-~~~~lvi~Pt~~L~~q~~~~ 763 (1034)
.|+|+|.+|++.++. .++++++++|||||||+++ +++.+.+...+ ..++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 499999999998764 1368999999999999998 66666654432 36999999999999999888
Q ss_pred HHHHhhhhcCCeEEEEcCCCCccc--cc--cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHH
Q psy13788 764 WKVKFEARLKKKVVELTGDVTPDI--QA--ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLE 839 (1034)
Q Consensus 764 ~~~~~~~~~~~~v~~~~g~~~~~~--~~--~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~ 839 (1034)
+.. +... . +.+..+... .. ..+++|+|+||+++..++........+....+||+||||++.. +..+.
T Consensus 350 f~~-f~~~---~---v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~~~~~ 420 (1038)
T 2w00_A 350 YQR-FSPD---S---VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--GEAQK 420 (1038)
T ss_dssp HHT-TSTT---C---SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--HHHHH
T ss_pred HHH-hccc---c---cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--hHHHH
Confidence 764 3321 1 122222111 11 2468999999999987665321122345778999999999752 33333
Q ss_pred HHHHHHHHhhhccCCCeEEEEEccCCCC
Q psy13788 840 VIVSRVNFISSYTKRNVRLVGLSTALAN 867 (1034)
Q Consensus 840 ~il~rl~~l~~~~~~~~~iv~lSATl~~ 867 (1034)
.+.. .. ++.++++||||+..
T Consensus 421 ~I~~-------~~-p~a~~lgfTATP~~ 440 (1038)
T 2w00_A 421 NLKK-------KF-KRYYQFGFTGTPIF 440 (1038)
T ss_dssp HHHH-------HC-SSEEEEEEESSCCC
T ss_pred HHHH-------hC-CcccEEEEeCCccc
Confidence 3332 22 35789999999875
No 77
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.77 E-value=2.9e-18 Score=187.69 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=117.6
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
+|+|+|.++++.++ .+++.++++|||+|||+++..++...+.. ...++||++|+++|+.|+.+++.+. ....+..+.
T Consensus 113 ~l~~~Q~~ai~~~l-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~l~~~-~~~~~~~~~ 189 (282)
T 1rif_A 113 EPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDY-RLFSHAMIK 189 (282)
T ss_dssp CCCHHHHHHHHHHH-HHSEEEECCCTTSCHHHHHHHHHHHHHHH-CSSEEEEECSSHHHHHHHHHHHHHH-TSCCGGGEE
T ss_pred CccHHHHHHHHHHH-hcCCeEEEcCCCCCcHHHHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHh-cccccceEE
Confidence 49999999999888 45778999999999999998888877654 3459999999999999999999754 332445677
Q ss_pred EEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeE
Q psy13788 778 ELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVR 857 (1034)
Q Consensus 778 ~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~ 857 (1034)
.+.|+..........++|+|+||+.+... ....+.+++++|+||||++.+ ..++.++ .......+
T Consensus 190 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~-----~~~~~~~~~~vIiDEaH~~~~---~~~~~il-------~~~~~~~~ 254 (282)
T 1rif_A 190 KIGGGASKDDKYKNDAPVVVGTWQTVVKQ-----PKEWFSQFGMMMNDECHLATG---KSISSII-------SGLNNCMF 254 (282)
T ss_dssp ECSTTCSSTTCCCTTCSEEEECHHHHTTS-----CGGGGGGEEEEEEETGGGCCH---HHHHHHT-------TTCTTCCE
T ss_pred EEeCCCcchhhhccCCcEEEEchHHHHhh-----HHHHHhhCCEEEEECCccCCc---ccHHHHH-------HHhhcCCe
Confidence 77776655443446789999999876321 223567889999999999973 3444444 33345789
Q ss_pred EEEEccCCCCH
Q psy13788 858 LVGLSTALANA 868 (1034)
Q Consensus 858 iv~lSATl~~~ 868 (1034)
++++|||+++.
T Consensus 255 ~l~lSATp~~~ 265 (282)
T 1rif_A 255 KFGLSGSLRDG 265 (282)
T ss_dssp EEEECSSCCTT
T ss_pred EEEEeCCCCCc
Confidence 99999999874
No 78
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=176.78 Aligned_cols=165 Identities=16% Similarity=0.156 Sum_probs=120.1
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC---CCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCe
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---EAKVVYIAPLKALVKERVADWKVKFEARLKKK 775 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~---~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~ 775 (1034)
++++|.++++.+. .|+++++.||||||||+++.++++....... +.++++++|+++|+.|+.+.+...++...+..
T Consensus 62 ~~~~q~~~i~~i~-~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 62 VKKFESEILEAIS-QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGHHHHHHHHH-HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred hHHHHHHHHHHHh-cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 7889999999997 7899999999999999999999887665432 35899999999999999998887666545555
Q ss_pred EEEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCC
Q psy13788 776 VVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRN 855 (1034)
Q Consensus 776 v~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~ 855 (1034)
++.-.... ......+++|+|+||+++..++.. .+.+++++|+||||.+.- ........++.+.... ++
T Consensus 141 ~g~~~~~~--~~~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~~~----~~~~~~~~l~~i~~~~-~~ 208 (235)
T 3llm_A 141 CGYSVRFE--SILPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHERDI----NTDFLLVVLRDVVQAY-PE 208 (235)
T ss_dssp EEEEETTE--EECCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSCCH----HHHHHHHHHHHHHHHC-TT
T ss_pred EEEeechh--hccCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccCCc----chHHHHHHHHHHHhhC-CC
Confidence 44322111 111124689999999999777753 378999999999998531 1111222223222222 47
Q ss_pred eEEEEEccCCCCHHHHHhHhcc
Q psy13788 856 VRLVGLSTALANAKDLATWLNI 877 (1034)
Q Consensus 856 ~~iv~lSATl~~~~~l~~~l~~ 877 (1034)
.|++++|||+++.. +++|++.
T Consensus 209 ~~~il~SAT~~~~~-~~~~~~~ 229 (235)
T 3llm_A 209 VRIVLMSATIDTSM-FCEYFFN 229 (235)
T ss_dssp SEEEEEECSSCCHH-HHHHTTS
T ss_pred CeEEEEecCCCHHH-HHHHcCC
Confidence 89999999998765 8888863
No 79
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.71 E-value=2.8e-16 Score=186.74 Aligned_cols=133 Identities=17% Similarity=0.051 Sum_probs=106.4
Q ss_pred cccccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhh
Q psy13788 692 SLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771 (1034)
Q Consensus 692 ~~~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~ 771 (1034)
..+|+ .|+|+|..+++.++ .|+ +..|+||+|||++|.+|++..... +..++|++||++||.|.+..+... ...
T Consensus 74 R~lG~-~Pt~VQ~~~ip~Ll-qG~--IaeakTGeGKTLvf~Lp~~L~aL~--G~qv~VvTPTreLA~Qdae~m~~l-~~~ 146 (997)
T 2ipc_A 74 RYLGM-RHFDVQLIGGAVLH-EGK--IAEMKTGEGKTLVATLAVALNALT--GKGVHVVTVNDYLARRDAEWMGPV-YRG 146 (997)
T ss_dssp HHTCC-CCCHHHHHHHHHHH-TTS--EEECCSTHHHHHHHHHHHHHHHTT--CSCCEEEESSHHHHHHHHHHHHHH-HHT
T ss_pred HHhCC-CCcHHHHhhccccc-CCc--eeeccCCCchHHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHHH-HHh
Confidence 34678 69999999999987 666 999999999999999999644333 678999999999999988877754 455
Q ss_pred cCCeEEEEcCCCCccccc-cCCCcEEEECHhhH-HHHHhccc----cccccC---cccEEEEecccccC
Q psy13788 772 LKKKVVELTGDVTPDIQA-ISSASVIVTTPEKW-DGVSRSWQ----NRNYVQ---SVALIIIDEIHLLG 831 (1034)
Q Consensus 772 ~~~~v~~~~g~~~~~~~~-~~~~~IiV~Tpe~l-~~l~~~~~----~~~~l~---~l~~lViDEaH~l~ 831 (1034)
+|++++.+.|+.+...+. ..++||+|+||+++ ..+++... ....++ .+.++|+||+|.++
T Consensus 147 lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred cCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 899999999988754333 34799999999998 56665321 123456 89999999999875
No 80
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.69 E-value=1.5e-15 Score=184.93 Aligned_cols=153 Identities=19% Similarity=0.261 Sum_probs=106.5
Q ss_pred CCChhHHHHHHHHh--------cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCC-----CCeEEEEcCcHHHHHHHHHHH
Q psy13788 698 HFNPIQTQIFHCLY--------HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP-----EAKVVYIAPLKALVKERVADW 764 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~--------~~~~~vll~apTGsGKT~~~~l~il~~l~~~~-----~~~~lvi~Pt~~L~~q~~~~~ 764 (1034)
.++|+|.+++..++ ..+...++..+||.|||+.++..+...+...+ ..++|||+|+ +|+.|+.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 49999999998764 24567999999999999999888877766542 3569999997 8999999998
Q ss_pred HHHhhhhcCCeEEEEcCCCCccccc-----------cCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCC
Q psy13788 765 KVKFEARLKKKVVELTGDVTPDIQA-----------ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED 833 (1034)
Q Consensus 765 ~~~~~~~~~~~v~~~~g~~~~~~~~-----------~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~ 833 (1034)
.+.+.. .+.+..+.|+....... ....+|+|+|++.+..... ......+++||+||||++.+.
T Consensus 134 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~----~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 134 GKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE----VLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT----TTTTSCCCEEEETTGGGCCTT
T ss_pred HHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH----HhhcCCccEEEEECceecCCh
Confidence 876543 35566666654322110 1247899999998854332 122346789999999999764
Q ss_pred ChhHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 834 RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 834 ~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
....+.. +..+ ...+.++||||+-
T Consensus 208 ~~~~~~a-l~~l--------~~~~rl~LTgTPi 231 (644)
T 1z3i_X 208 DNQTYLA-LNSM--------NAQRRVLISGTPI 231 (644)
T ss_dssp CHHHHHH-HHHH--------CCSEEEEECSSCS
T ss_pred hhHHHHH-HHhc--------ccCcEEEEecCcc
Confidence 3333322 2222 2346799999964
No 81
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.2e-16 Score=193.92 Aligned_cols=152 Identities=12% Similarity=0.077 Sum_probs=105.3
Q ss_pred CCChhHHHHHHHHh---cCCCcEEEEcCCCChhhHHHHHHHHHHHH-hCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 698 HFNPIQTQIFHCLY---HTDNNVLLGAPTGSGKTIAAEITCFRVFK-QCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~---~~~~~vll~apTGsGKT~~~~l~il~~l~-~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
+++|+|.+++..+. ..+.+++++.+||.|||+.++..+...+. ......+|||+| .+|+.|+.+++.+.+. +
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p---~ 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP---D 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST---T
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC---C
Confidence 39999999997443 46789999999999999988777665543 334678999999 6888998888876543 4
Q ss_pred CeEEEEcCCCCccc---------------cccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHH
Q psy13788 774 KKVVELTGDVTPDI---------------QAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVL 838 (1034)
Q Consensus 774 ~~v~~~~g~~~~~~---------------~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~ 838 (1034)
.++..++|+..... ......+|+|+|++.+....... .-...++||+||||++.+.... .
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l----~~~~w~~vIvDEaH~lkn~~s~-~ 386 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL----GSIKWQFMAVDEAHRLKNAESS-L 386 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH----HTSEEEEEEETTGGGGCCSSSH-H
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH----hcCCcceeehhhhhhhcCchhH-H
Confidence 67887887654221 12246789999999985433211 1235789999999999753222 2
Q ss_pred HHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 839 EVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 839 ~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
...+.. . ...+.++||||+-
T Consensus 387 ~~~l~~-------l-~~~~rl~LTgTPi 406 (800)
T 3mwy_W 387 YESLNS-------F-KVANRMLITGTPL 406 (800)
T ss_dssp HHHHTT-------S-EEEEEEEECSCCC
T ss_pred HHHHHH-------h-hhccEEEeeCCcC
Confidence 222211 2 2345689999974
No 82
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.68 E-value=1.9e-16 Score=168.04 Aligned_cols=139 Identities=19% Similarity=0.240 Sum_probs=106.6
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCe-E
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK-V 776 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~-v 776 (1034)
.|+++|.+++..++ .++++++++|||+|||.++..++... +.+++|++|+++|+.|+.+.+.+ ++.+ +
T Consensus 93 ~l~~~Q~~ai~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~-----~~~~~v 161 (237)
T 2fz4_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-----FGEEYV 161 (237)
T ss_dssp CCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGG-----GCGGGE
T ss_pred CcCHHHHHHHHHHH-hCCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHh-----CCCCeE
Confidence 49999999999988 56789999999999999998887654 67999999999999998887765 3567 8
Q ss_pred EEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCe
Q psy13788 777 VELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNV 856 (1034)
Q Consensus 777 ~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~ 856 (1034)
..+.|+... ..+|+|+|++.+...... ...++++||+||||++.+. .++.++. .. ...
T Consensus 162 ~~~~g~~~~------~~~i~v~T~~~l~~~~~~-----~~~~~~llIiDEaH~l~~~---~~~~i~~-------~~-~~~ 219 (237)
T 2fz4_A 162 GEFSGRIKE------LKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAE---SYVQIAQ-------MS-IAP 219 (237)
T ss_dssp EEESSSCBC------CCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTT---THHHHHH-------TC-CCS
T ss_pred EEEeCCCCC------cCCEEEEeHHHHHhhHHH-----hcccCCEEEEECCccCCCh---HHHHHHH-------hc-cCC
Confidence 888886542 578999999988554432 1245899999999999762 2333332 12 356
Q ss_pred EEEEEccCCCCHH
Q psy13788 857 RLVGLSTALANAK 869 (1034)
Q Consensus 857 ~iv~lSATl~~~~ 869 (1034)
++++||||+.+.+
T Consensus 220 ~~l~LSATp~r~D 232 (237)
T 2fz4_A 220 FRLGLTATFERED 232 (237)
T ss_dssp EEEEEEESCC---
T ss_pred EEEEEecCCCCCC
Confidence 7899999998744
No 83
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.68 E-value=9.4e-17 Score=203.00 Aligned_cols=115 Identities=15% Similarity=0.204 Sum_probs=89.5
Q ss_pred ccc-eecchhHH-----HHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHH
Q psy13788 104 HGC-YVHIGILD-----VLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVL 176 (1034)
Q Consensus 104 ~g~-~~h~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~ 176 (1034)
.|+ +||+|+.. +++.|..+ .+...++|.++++ |||+|+ +|||.++.+||+.. ++++++.+|.
T Consensus 407 ~gI~~~Hggl~~~eR~~ve~~F~~G--------~ikVLVAT~~la~-GIDiP~~~vVI~~~~kfd~~~--~rp~s~~~y~ 475 (1010)
T 2xgj_A 407 RGIGIHHSGLLPILKEVIEILFQEG--------FLKVLFATETFSI-GLNMPAKTVVFTSVRKWDGQQ--FRWVSGGEYI 475 (1010)
T ss_dssp HTEEEESTTSCHHHHHHHHHHHHTT--------CCSEEEEEGGGGG-STTCCBSEEEESCSEEECSSC--EEECCHHHHH
T ss_pred CCeeEECCCCCHHHHHHHHHHHhcC--------CCcEEEEehHhhc-cCCCCCceEEEeCCcccCCcC--CccCCHHHHh
Confidence 456 66777762 33444332 5567777777774 899998 89999999999653 5899999999
Q ss_pred HHhhccCCCCccccceEEEECCcc-cHHHHHHHh-cCCcceecccccchHHHHhh
Q psy13788 177 QIFGRAGRPQYNTSGHATIITPHE-KLNHYLSLL-TNQIPIESNFVANLADNLNA 229 (1034)
Q Consensus 177 Qm~GRAGR~~~d~~G~~~i~~~~~-~~~~y~~~~-~~~~~i~s~l~~~~~~~ln~ 229 (1034)
||+|||||+|.|+.|.+++++.+. ....+.+++ +.++|++|+|...+.+.+|.
T Consensus 476 Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~~~ilnl 530 (1010)
T 2xgj_A 476 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 530 (1010)
T ss_dssp HHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCHHHHHHH
T ss_pred HhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcHHHHHHH
Confidence 999999999999999999999865 444555554 66788999999877777664
No 84
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.64 E-value=3.9e-15 Score=173.93 Aligned_cols=130 Identities=16% Similarity=0.046 Sum_probs=91.7
Q ss_pred cccCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC
Q psy13788 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773 (1034)
Q Consensus 694 ~~~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~ 773 (1034)
.|+. |+++|....-.+ +.|+ +..+.||+|||+++.+|++-.... +..+.|++|+..||.|-++.+.. +-+.+|
T Consensus 72 lg~r-~~dvQligg~~L-~~G~--iaEM~TGEGKTLva~lp~~lnAL~--G~~vhVvT~ndyLA~rdae~m~~-l~~~Lg 144 (822)
T 3jux_A 72 LGMR-PFDVQVMGGIAL-HEGK--VAEMKTGEGKTLAATMPIYLNALI--GKGVHLVTVNDYLARRDALWMGP-VYLFLG 144 (822)
T ss_dssp TSCC-CCHHHHHHHHHH-HTTC--EEECCTTSCHHHHTHHHHHHHHTT--SSCEEEEESSHHHHHHHHHHHHH-HHHHTT
T ss_pred hCCC-CcHHHHHHHHHH-hCCC--hhhccCCCCccHHHHHHHHHHHhc--CCceEEEeccHHHHHhHHHHHHH-HHHHhC
Confidence 3444 667777766655 4665 999999999999999998744333 78899999999999997776664 445599
Q ss_pred CeEEEEcCC--------------------------------------------------CCcc-ccccCCCcEEEECHhh
Q psy13788 774 KKVVELTGD--------------------------------------------------VTPD-IQAISSASVIVTTPEK 802 (1034)
Q Consensus 774 ~~v~~~~g~--------------------------------------------------~~~~-~~~~~~~~IiV~Tpe~ 802 (1034)
++++.+..+ .++. .+..-.|||+.+|..-
T Consensus 145 lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~E 224 (822)
T 3jux_A 145 LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNE 224 (822)
T ss_dssp CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHH
T ss_pred CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcc
Confidence 999988872 1111 1112258999999988
Q ss_pred H-HHHHhc-c---ccccccCcccEEEEeccccc
Q psy13788 803 W-DGVSRS-W---QNRNYVQSVALIIIDEIHLL 830 (1034)
Q Consensus 803 l-~~l~~~-~---~~~~~l~~l~~lViDEaH~l 830 (1034)
+ .+.++. . ......+...+.||||+|.+
T Consensus 225 fgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSi 257 (822)
T 3jux_A 225 FGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSV 257 (822)
T ss_dssp HHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHH
T ss_pred hhhHhHHhhccCCHHHhccCCCCeEEEecccce
Confidence 7 334442 1 12223467889999999964
No 85
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.61 E-value=1.4e-14 Score=173.33 Aligned_cols=128 Identities=22% Similarity=0.222 Sum_probs=94.8
Q ss_pred CCChhHHHHHHHHh---cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCC
Q psy13788 698 HFNPIQTQIFHCLY---HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~---~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~ 774 (1034)
+++|.|.+++..++ ..++++++.||||+|||++|++|++.. +.+++|++||++|+.|..+++. .+.+..++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----~~~v~i~~pt~~l~~q~~~~~~-~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----KPKVLFVVRTHNEFYPIYRDLT-KIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----CSEEEEEESSGGGHHHHHHHHT-TCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----CCeEEEEcCCHHHHHHHHHHHH-HHhhhcCc
Confidence 39999999876543 378999999999999999999999983 7899999999999999887776 44444578
Q ss_pred eEEEEcCCCCc---------------------------------c---------------------ccccCCCcEEEECH
Q psy13788 775 KVVELTGDVTP---------------------------------D---------------------IQAISSASVIVTTP 800 (1034)
Q Consensus 775 ~v~~~~g~~~~---------------------------------~---------------------~~~~~~~~IiV~Tp 800 (1034)
++..+.|.... . ......++|||+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 88877762110 0 01124689999999
Q ss_pred hhHHHHHhccccccccCcccEEEEecccccCC
Q psy13788 801 EKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832 (1034)
Q Consensus 801 e~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~ 832 (1034)
..+.....+ ...........+|+||||.+.+
T Consensus 157 ~~l~~~~~~-~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 157 PYFFIDRYR-EFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHCHHHH-TTSCCCSTTEEEEETTGGGGGG
T ss_pred hHhcCHHHH-HhcCCCcCCeEEEEecccchHH
Confidence 998443221 1112235678999999998754
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.61 E-value=1.2e-14 Score=173.35 Aligned_cols=126 Identities=23% Similarity=0.195 Sum_probs=86.6
Q ss_pred ccCCCChhHHHHHHHHh---cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhh
Q psy13788 695 KFSHFNPIQTQIFHCLY---HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771 (1034)
Q Consensus 695 ~~~~~~~~Q~~ai~~l~---~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~ 771 (1034)
+| +|+|+|.+++..+. ..++++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+++.+
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----~~~~~~~~~t~~l~~q~~~~~~~----- 73 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----KKKVLIFTRTHSQLDSIYKNAKL----- 73 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----TCEEEEEESCHHHHHHHHHHHGG-----
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHHHh-----
Confidence 45 49999999876542 378899999999999999999998765 68999999999999999887654
Q ss_pred cCCeEEEEcCCCC----------c----------------------------------------cccccCCCcEEEECHh
Q psy13788 772 LKKKVVELTGDVT----------P----------------------------------------DIQAISSASVIVTTPE 801 (1034)
Q Consensus 772 ~~~~v~~~~g~~~----------~----------------------------------------~~~~~~~~~IiV~Tpe 801 (1034)
++.++..+.|... . .......++|||+|+.
T Consensus 74 l~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~ 153 (540)
T 2vl7_A 74 LGLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYP 153 (540)
T ss_dssp GTCCEEEC---------------------------------------------------------CTTGGGCSEEEEETH
T ss_pred cCCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChH
Confidence 3444444443110 0 0111346799999999
Q ss_pred hHHH-HHhcccc----ccccCcccEEEEecccccC
Q psy13788 802 KWDG-VSRSWQN----RNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 802 ~l~~-l~~~~~~----~~~l~~l~~lViDEaH~l~ 831 (1034)
.+.. ..+.... ...+....++|+||||.+.
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 154 YLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9843 3321111 1134678899999999984
No 87
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.3e-15 Score=191.97 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=87.4
Q ss_pred ccc-eecchhH-----HHHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHH
Q psy13788 104 HGC-YVHIGIL-----DVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVL 176 (1034)
Q Consensus 104 ~g~-~~h~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~ 176 (1034)
.|+ ++|+|+. .+.+.|..+ .+...++|.++++ |||+|+ ++||.....||+.. ++++++.+|.
T Consensus 505 ~gV~~~Hg~l~~~~R~~v~~~F~~G--------~ikVLVAT~vla~-GIDiP~v~~VI~~~~~~d~~~--~r~iS~~eyi 573 (1108)
T 3l9o_A 505 RGIGIHHSGLLPILKEVIEILFQEG--------FLKVLFATETFSI-GLNMPAKTVVFTSVRKWDGQQ--FRWVSGGEYI 573 (1108)
T ss_dssp HTEEEECSCSCHHHHHHHHHHHHHT--------CCCEEEEESCCCS-CCCC--CEEEESCSEEESSSC--EEECCHHHHH
T ss_pred cCeeeecCCCCHHHHHHHHHHHhCC--------CCeEEEECcHHhc-CCCCCCceEEEecCcccCccc--cccCCHHHHH
Confidence 456 6677776 233445433 4456666666664 899998 89999999998764 5899999999
Q ss_pred HHhhccCCCCccccceEEEECCcc-cHHHHHHHh-cCCcceecccccchHHHHhhhh
Q psy13788 177 QIFGRAGRPQYNTSGHATIITPHE-KLNHYLSLL-TNQIPIESNFVANLADNLNAEV 231 (1034)
Q Consensus 177 Qm~GRAGR~~~d~~G~~~i~~~~~-~~~~y~~~~-~~~~~i~s~l~~~~~~~ln~e~ 231 (1034)
||+|||||.|.|..|.+++++.+. ....+..++ +.+.|+.|+|...+.+.||.--
T Consensus 574 Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~ilnll~ 630 (1108)
T 3l9o_A 574 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMR 630 (1108)
T ss_dssp HHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_pred HhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHHHHHHH
Confidence 999999999999999999999875 333444544 6678999999998877777543
No 88
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.57 E-value=1.6e-14 Score=182.83 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=89.4
Q ss_pred ccc-eecchhHH-----HHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHH
Q psy13788 104 HGC-YVHIGILD-----VLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVL 176 (1034)
Q Consensus 104 ~g~-~~h~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~ 176 (1034)
.|+ .+|+|+.. +.+.|..+ .+...++|.++++ |||+|+ +|||.+...||+. ...++++.+|.
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~G--------~~kVLvAT~~~a~-GIDiP~~~VVi~~~~k~dg~--~~~~~s~~~y~ 468 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSKG--------FIKVLFATETFAM-GLNLPTRTVIFSSIRKHDGN--GLRELTPGEFT 468 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTT--------CCSEEEECTHHHH-SCCCCCSEEEESCSEEEETT--EEEECCHHHHH
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCC--------CCcEEEEchHhhC-CCCCCCceEEEeccccccCc--cCCCCCHHHHh
Confidence 467 66888762 33444332 4577778888886 899998 8999999999975 36899999999
Q ss_pred HHhhccCCCCccccceEEEECCc--ccHHHHHHHh-cCCcceecccccchHHHHhhh
Q psy13788 177 QIFGRAGRPQYNTSGHATIITPH--EKLNHYLSLL-TNQIPIESNFVANLADNLNAE 230 (1034)
Q Consensus 177 Qm~GRAGR~~~d~~G~~~i~~~~--~~~~~y~~~~-~~~~~i~s~l~~~~~~~ln~e 230 (1034)
||+|||||.|.|..|.+++++.. .....+..++ +.++++.|+|...+.+.+|.-
T Consensus 469 Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll 525 (997)
T 4a4z_A 469 QMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLL 525 (997)
T ss_dssp HHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHH
T ss_pred HHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHH
Confidence 99999999999999999999953 3334444443 678899999988877766653
No 89
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.56 E-value=1e-13 Score=168.53 Aligned_cols=162 Identities=16% Similarity=0.140 Sum_probs=100.0
Q ss_pred CcccEEEEecccccCCCChhHHHHHHHHHHHhhh------------------ccCCCeEEEEEccCCCCHHHHHhHhccc
Q psy13788 817 QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISS------------------YTKRNVRLVGLSTALANAKDLATWLNIT 878 (1034)
Q Consensus 817 ~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~------------------~~~~~~~iv~lSATl~~~~~l~~~l~~~ 878 (1034)
.+-.++|+||+|++.+..+..++....++..+.. ..+...+++++|||+++.. +.. .
T Consensus 324 ~~~~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~-~~~--~-- 398 (664)
T 1c4o_A 324 PEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFE-LAH--S-- 398 (664)
T ss_dssp CTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHH-HHH--C--
T ss_pred hhccEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHH-HHh--h--
Confidence 3446899999999875444444444333322211 0113568899999986532 211 0
Q ss_pred CCceee--cCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhh-CCCCCeEEEecChHHHHHHHHHHHHHHhccC
Q psy13788 879 KQGMYN--FRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQH-SPEKPVMIFVSSRRQTRLTAIDLITILACET 955 (1034)
Q Consensus 879 ~~~~~~--~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~ 955 (1034)
..+.. ..+.....+. +.+..+. .. ...+...+... ..+.++||||+|++.|+.++..|....
T Consensus 399 -~~~~~~~~r~~~l~~p~-i~v~~~~-----~~----~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---- 463 (664)
T 1c4o_A 399 -GRVVEQIIRPTGLLDPL-VRVKPTE-----NQ----ILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHG---- 463 (664)
T ss_dssp -SEEEEECSCTTCCCCCE-EEEECST-----TH----HHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTT----
T ss_pred -hCeeeeeeccCCCCCCe-EEEeccc-----ch----HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC----
Confidence 01111 1121111111 2222221 11 12233334332 246799999999999999888776531
Q ss_pred CCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 956 NPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
..+.++||++++.+|..+++ . |++|+++|||||+++++|+ |+.
T Consensus 464 ------------------------------i~~~~lh~~~~~~~R~~~~~--~--f~~g~~~VLvaT~~l~~Gl-Dip 506 (664)
T 1c4o_A 464 ------------------------------IRARYLHHELDAFKRQALIR--D--LRLGHYDCLVGINLLREGL-DIP 506 (664)
T ss_dssp ------------------------------CCEEEECTTCCHHHHHHHHH--H--HHTTSCSEEEESCCCCTTC-CCT
T ss_pred ------------------------------CCceeecCCCCHHHHHHHHH--H--hhcCCceEEEccChhhcCc-cCC
Confidence 12678999999999999977 6 9999999999999999999 985
No 90
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.45 E-value=3.2e-13 Score=166.59 Aligned_cols=206 Identities=16% Similarity=0.162 Sum_probs=125.8
Q ss_pred eecchhHHH-HHHhhhcCCCc-cccccccccccchhhhccCcccce-EEEec----CceeecCCCCeee----ecChhhH
Q psy13788 107 YVHIGILDV-LQIFGRAGRPQ-YNTSDLGRTASNYYIKHNDIELFT-EHMTK----GTEMYNAKHGCYV----HIGILDV 175 (1034)
Q Consensus 107 ~~h~~~~~~-~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~gvn~pa-~vii~----~~~~~~~~~~~~~----~~~~~~~ 175 (1034)
.+|+++... .+...+.++.. -........++|..++. |||+|. ++||. ....||+..|... +++..+|
T Consensus 343 ~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~-GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~ 421 (773)
T 2xau_A 343 PLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET-SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASA 421 (773)
T ss_dssp EECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH-TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHH
T ss_pred EeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh-CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHH
Confidence 557777632 22223333200 00335677777777774 899997 55554 3466998887432 8899999
Q ss_pred HHHhhccCCCCccccceEEEECCcccHHHHHH-HhcCCcc--eecccccchHHHHhhhhhcccccchhhHHHHHHHHHHH
Q psy13788 176 LQIFGRAGRPQYNTSGHATIITPHEKLNHYLS-LLTNQIP--IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINF 252 (1034)
Q Consensus 176 ~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~-~~~~~~~--i~s~l~~~~~~~ln~e~~~~~~~~~~~~~~~~~~~~~~ 252 (1034)
.||+|||||. ..|.++.++..+. |.. +.....| ..+.|.
T Consensus 422 ~QR~GRaGR~---~~G~~~~l~~~~~---~~~~l~~~~~pEi~r~~L~-------------------------------- 463 (773)
T 2xau_A 422 QQRAGRAGRT---RPGKCFRLYTEEA---FQKELIEQSYPEILRSNLS-------------------------------- 463 (773)
T ss_dssp HHHHHGGGSS---SSEEEEESSCHHH---HHHTSCSSCCCGGGGSCCH--------------------------------
T ss_pred HhhccccCCC---CCCEEEEEecHHH---hcccccccCCCccccCcHH--------------------------------
Confidence 9999999998 6899999997653 322 2121222 222221
Q ss_pred HHHHhhhcccchhcccccCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHhhhcCceEEe
Q psy13788 253 VANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFN 332 (1034)
Q Consensus 253 ~~~~~~~il~~i~~~~~~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~ 332 (1034)
..+|.+.++|. .++ . .|-|. + .| ..+.+..+++.|.+.|+|..
T Consensus 464 -----~~~L~l~~~gi-~~~---~-----~f~~~----~-------------~p-----~~~~i~~a~~~L~~lgald~- 506 (773)
T 2xau_A 464 -----STVLELKKLGI-DDL---V-----HFDFM----D-------------PP-----APETMMRALEELNYLACLDD- 506 (773)
T ss_dssp -----HHHHHHHHTTC-CCG---G-----GCCCS----S-------------CC-----CHHHHHHHHHHHHHTTSBCT-
T ss_pred -----HHHHHHHHcCC-CCh---h-----hcccc----C-------------CC-----cHHHHHHHHHHHHHcCCccc-
Confidence 22333334432 111 0 11121 0 11 13567899999999999942
Q ss_pred cCCCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhhhH
Q psy13788 333 MRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELH 394 (1034)
Q Consensus 333 ~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E~~ 394 (1034)
.-.+|++|+++|.++++|..+..+.....-.. ...++.++|... +.++.++..+..
T Consensus 507 ----~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c-~~~~l~i~a~ls-~~~~f~~~~~~~ 562 (773)
T 2xau_A 507 ----EGNLTPLGRLASQFPLDPMLAVMLIGSFEFQC-SQEILTIVAMLS-VPNVFIRPTKDK 562 (773)
T ss_dssp ----TSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTC-HHHHHHHHHHHT-SCCCBCCCTTCH
T ss_pred ----CCCcChhhhhhccccCCHHHHHHHHhhcccCc-hhHHHHHHHhcc-cCCcccCChHHH
Confidence 23599999999999999999999998755432 455666666544 355555555443
No 91
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.44 E-value=5.2e-12 Score=153.48 Aligned_cols=162 Identities=12% Similarity=0.130 Sum_probs=98.8
Q ss_pred ccEEEEecccccCCCChhHHHHHHHHHHHhhh------------------ccCCCeEEEEEccCCCCHHHHHhHhcccCC
Q psy13788 819 VALIIIDEIHLLGEDRGPVLEVIVSRVNFISS------------------YTKRNVRLVGLSTALANAKDLATWLNITKQ 880 (1034)
Q Consensus 819 l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~------------------~~~~~~~iv~lSATl~~~~~l~~~l~~~~~ 880 (1034)
-.++|+||+|++.+..+..+.....+...+.. ..+...|++++|||+++.. +.. . ...
T Consensus 332 ~~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~-~~~--~-~~~ 407 (661)
T 2d7d_A 332 DFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE-IEH--T-DEM 407 (661)
T ss_dssp SCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEECSSCCHHH-HHH--C-SSC
T ss_pred CcEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEEecCCChhH-HHh--h-hCe
Confidence 35899999999864333334433332222111 0123578899999986422 211 0 000
Q ss_pred ceeecCCCCcccccEEEEecCCCCCCchhhhhccHHHHHHHHhh-CCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCc
Q psy13788 881 GMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQH-SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKM 959 (1034)
Q Consensus 881 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~ 959 (1034)
.-....+.....|. +.+..+. .. ...+...+... ..+.++||||+|++.|+.++..|....
T Consensus 408 ~~~~~r~~~l~~p~-i~v~~~~-----~~----~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g-------- 469 (661)
T 2d7d_A 408 VEQIIRPTGLLDPL-IDVRPIE-----GQ----IDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIG-------- 469 (661)
T ss_dssp EEECCCTTCCCCCE-EEEECST-----TH----HHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTT--------
T ss_pred eeeeecccCCCCCe-EEEeccc-----ch----HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcC--------
Confidence 00111221111221 2222211 11 12333444333 356799999999999999888776531
Q ss_pred ccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 960 WVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 960 ~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
..+.++||++++.+|..+++ . |++|+++|||||+++++|+ |+.
T Consensus 470 --------------------------i~~~~lh~~~~~~~R~~~l~--~--f~~g~~~VLVaT~~l~~Gl-Dip 512 (661)
T 2d7d_A 470 --------------------------IKVNYLHSEIKTLERIEIIR--D--LRLGKYDVLVGINLLREGL-DIP 512 (661)
T ss_dssp --------------------------CCEEEECTTCCHHHHHHHHH--H--HHHTSCSEEEESCCCSTTC-CCT
T ss_pred --------------------------CCeEEEeCCCCHHHHHHHHH--H--HhcCCeEEEEecchhhCCc-ccC
Confidence 12678999999999999877 6 9999999999999999999 985
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.44 E-value=1.1e-12 Score=158.01 Aligned_cols=81 Identities=22% Similarity=0.367 Sum_probs=64.8
Q ss_pred CChhHHHHHHHHh---cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCe
Q psy13788 699 FNPIQTQIFHCLY---HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~---~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~ 775 (1034)
|+|.|.+++..++ ..++++++.||||+|||++|++|++..+.. .+.+++|++||++|+.|..+++.. +....+++
T Consensus 4 ~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-~~~kvli~t~T~~l~~Qi~~el~~-l~~~~~~~ 81 (620)
T 4a15_A 4 NRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-RKLKVLYLVRTNSQEEQVIKELRS-LSSTMKIR 81 (620)
T ss_dssp -CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHH-HHHHSCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHH-HhhccCeE
Confidence 8999999886543 478999999999999999999999988754 367999999999999999988874 44434566
Q ss_pred EEEEcC
Q psy13788 776 VVELTG 781 (1034)
Q Consensus 776 v~~~~g 781 (1034)
+..+.|
T Consensus 82 ~~~l~g 87 (620)
T 4a15_A 82 AIPMQG 87 (620)
T ss_dssp EEECCC
T ss_pred EEEEEC
Confidence 555444
No 93
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.33 E-value=4.3e-12 Score=153.06 Aligned_cols=189 Identities=16% Similarity=0.123 Sum_probs=111.6
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhhhhhHHHhh--------cc-cc-----------
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDT--------AY-HT----------- 63 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~----------- 63 (1034)
.+.+++|||||+|++.| +||+.|+.++.++. ....++++++++.+........ .+ ++
T Consensus 237 ~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~--~~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~l~~~~~~l~ 314 (677)
T 3rc3_A 237 TTPYEVAVIDEIQMIRDPARGWAWTRALLGLC--AEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALE 314 (677)
T ss_dssp SSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC--EEEEEEEECGGGHHHHHHHHHHHTCCEEEEECCCSSCEEECSSCCC
T ss_pred cccCCEEEEecceecCCccchHHHHHHHHccC--ccceEEEeccchHHHHHHHHHhcCCceEEEEeeecchHHHHHHHHH
Confidence 46789999999999999 99999999998853 2456788888754432221110 00 00
Q ss_pred -----CCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhH-----HHHHHhhhcCCCccccccc
Q psy13788 64 -----NENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGIL-----DVLQIFGRAGRPQYNTSDL 132 (1034)
Q Consensus 64 -----~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~-----~~~~~~~~~~~~~~~~~~l 132 (1034)
...-+||+.+. + .+..++..+ .+. ..++ .+|+++. ...+.|..+ ...+
T Consensus 315 ~l~~~~~g~iIf~~s~--~---~ie~la~~L----~~~------g~~v~~lHG~L~~~~R~~~~~~F~~~------~g~~ 373 (677)
T 3rc3_A 315 SLDNLRPGDCIVCFSK--N---DIYSVSRQI----EIR------GLESAVIYGSLPPGTKLAQAKKFNDP------NDPC 373 (677)
T ss_dssp SGGGCCTTEEEECSSH--H---HHHHHHHHH----HHT------TCCCEEECTTSCHHHHHHHHHHHHCT------TSSC
T ss_pred HHHhcCCCCEEEEcCH--H---HHHHHHHHH----Hhc------CCCeeeeeccCCHHHHHHHHHHHHcc------CCCe
Confidence 01123334331 1 122223332 221 1345 5566665 233445430 0123
Q ss_pred cccccchhhhccCcccce-EEEecCceee--cCCCC-eeeecChhhHHHHhhccCCCCcc-ccceEEEECCcccHHHHHH
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMY--NAKHG-CYVHIGILDVLQIFGRAGRPQYN-TSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~--~~~~~-~~~~~~~~~~~Qm~GRAGR~~~d-~~G~~~i~~~~~~~~~y~~ 207 (1034)
...++|..++. |||+|+ .||+.|..+| |+..+ ..++++..+|.||+|||||.|.+ +.|.+++++..+. ..+.+
T Consensus 374 ~VLVATdi~e~-GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~-~~~~~ 451 (677)
T 3rc3_A 374 KILVATDAIGM-GLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDL-SLLKE 451 (677)
T ss_dssp CEEEECGGGGS-SCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHH-HHHHH
T ss_pred EEEEeCcHHHC-CcCcCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchH-HHHHH
Confidence 44455555553 899987 7999998775 43311 24689999999999999999998 5698888877653 34444
Q ss_pred Hh-cCCcceecc
Q psy13788 208 LL-TNQIPIESN 218 (1034)
Q Consensus 208 ~~-~~~~~i~s~ 218 (1034)
++ ....+|++.
T Consensus 452 ~~~~~~~~i~~~ 463 (677)
T 3rc3_A 452 ILKRPVDPIRAA 463 (677)
T ss_dssp HHHSCCCCCCCE
T ss_pred HHhcCcchhhhc
Confidence 44 555678773
No 94
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.10 E-value=2.6e-10 Score=137.50 Aligned_cols=172 Identities=14% Similarity=0.138 Sum_probs=101.5
Q ss_pred ccccccEEEEeeeecccC-CCCchHHHHHHhhhhccc----cceeecccchhh--hhhHHHhhc----------------
Q psy13788 4 LTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIG----QEVFKGVKSLNR--IQSLVYDTA---------------- 60 (1034)
Q Consensus 4 ~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~---------------- 60 (1034)
..+++++|||||+|.+.+ ++++.++.++..+.+... ..|++++|++.+ +........
T Consensus 223 ~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 302 (563)
T 3i5x_A 223 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 302 (563)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred ccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCc
Confidence 457899999999999999 999999999988654332 467888877433 111110000
Q ss_pred ---------------------------------cccCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-
Q psy13788 61 ---------------------------------YHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC- 106 (1034)
Q Consensus 61 ---------------------------------~~~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 106 (1034)
..++.+++||+++ ...+..++..+.+....+ ..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s-----~~~~~~l~~~L~~~~~~~-------~~v~ 370 (563)
T 3i5x_A 303 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPT-----VKFTSFLCSILKNEFKKD-------LPIL 370 (563)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSC-----HHHHHHHHHHHHHHHTTT-------SCEE
T ss_pred cccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCc-----HHHHHHHHHHHHHhccCC-------ceEE
Confidence 0012234444443 111111122222221111 234
Q ss_pred eecchhH-----HHHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhh
Q psy13788 107 YVHIGIL-----DVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFG 180 (1034)
Q Consensus 107 ~~h~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~G 180 (1034)
.+|+++. .+.+.|..+ .+...++|..++. |||+|. ++|| .|| .+.++.+|.||+|
T Consensus 371 ~~h~~~~~~~R~~~~~~f~~g--------~~~vLvaT~~~~~-GiDip~v~~VI----~~~------~p~s~~~y~Qr~G 431 (563)
T 3i5x_A 371 EFHGKITQNKRTSLVKRFKKD--------ESGILVCTDVGAR-GMDFPNVHEVL----QIG------VPSELANYIHRIG 431 (563)
T ss_dssp EESTTSCHHHHHHHHHHHHHC--------SSEEEEECGGGTS-SCCCTTCCEEE----EES------CCSSTTHHHHHHT
T ss_pred EecCCCCHHHHHHHHHHHhcC--------CCCEEEEcchhhc-CCCcccCCEEE----EEC------CCCchhhhhhhcC
Confidence 4566665 233444332 3345556666663 899995 5554 254 3446799999999
Q ss_pred ccCCCCccccceEEEECCcccHHHHHHH
Q psy13788 181 RAGRPQYNTSGHATIITPHEKLNHYLSL 208 (1034)
Q Consensus 181 RAGR~~~d~~G~~~i~~~~~~~~~y~~~ 208 (1034)
||||.| ..|.+++++..++...+..+
T Consensus 432 RagR~g--~~g~~i~~~~~~e~~~~~~l 457 (563)
T 3i5x_A 432 RTARSG--KEGSSVLFICKDELPFVREL 457 (563)
T ss_dssp TSSCTT--CCEEEEEEEEGGGHHHHHHH
T ss_pred ccccCC--CCceEEEEEchhHHHHHHHH
Confidence 999997 46999999988776655554
No 95
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.90 E-value=4.8e-09 Score=120.85 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=44.0
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
...++|..++ .|||+|. .+||. ||.......+.+..+|.||+|||||.| ..|.++++........+.+
T Consensus 318 ~vlv~T~~~~-~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~ 386 (412)
T 3fht_A 318 KVLVTTNVCA-RGIDVEQVSVVIN----FDLPVDKDGNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKHSMNILN 386 (412)
T ss_dssp SEEEECGGGT-SSCCCTTEEEEEE----SSCCBCSSSSBCHHHHHHHHTTSSCTT--CCEEEEEEECSHHHHHHHH
T ss_pred cEEEEcCccc-cCCCccCCCEEEE----ECCCCCCCCCcchheeecccCcccCCC--CCceEEEEEcChhhHHHHH
Confidence 4445555555 3899996 55552 432111012367899999999999987 5799999988754334443
No 96
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.88 E-value=5.9e-09 Score=125.78 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=98.4
Q ss_pred ccccccEEEEeeeecccC-CCCchHHHHHHhhhhccc----cceeecccchhh--hhhHHHhhc----------------
Q psy13788 4 LTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIG----QEVFKGVKSLNR--IQSLVYDTA---------------- 60 (1034)
Q Consensus 4 ~~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~---------------- 60 (1034)
..+.+++|||||+|.+.+ +.++.++.++..+..... ..+++++|++.+ +........
T Consensus 172 ~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 251 (579)
T 3sqw_A 172 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251 (579)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred ccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccc
Confidence 457899999999999999 899999998888543322 457888776433 111110000
Q ss_pred ---------------------------------cccCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-
Q psy13788 61 ---------------------------------YHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC- 106 (1034)
Q Consensus 61 ---------------------------------~~~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 106 (1034)
..++..++||+++ ...+..++..+.+....+ ..+
T Consensus 252 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t-----~~~~~~l~~~L~~~~~~~-------~~v~ 319 (579)
T 3sqw_A 252 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPT-----VKFTSFLCSILKNEFKKD-------LPIL 319 (579)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSS-----HHHHHHHHHHHHHHHTTT-------SCEE
T ss_pred ccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCc-----HHHHHHHHHHHHHhhcCC-------CcEE
Confidence 0012234444443 111111122222211111 224
Q ss_pred eecchhH-----HHHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhh
Q psy13788 107 YVHIGIL-----DVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFG 180 (1034)
Q Consensus 107 ~~h~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~G 180 (1034)
.+|+++. .+.+.|..+ .+...++|..++. |||+|. ++|| .|+ .+.++..|.||+|
T Consensus 320 ~~hg~~~~~~R~~~~~~F~~g--------~~~vLVaT~~~~~-GiDip~v~~VI----~~~------~p~s~~~y~Qr~G 380 (579)
T 3sqw_A 320 EFHGKITQNKRTSLVKRFKKD--------ESGILVCTDVGAR-GMDFPNVHEVL----QIG------VPSELANYIHRIG 380 (579)
T ss_dssp EESTTSCHHHHHHHHHHHHHC--------SSEEEEECGGGTS-SCCCTTCCEEE----EES------CCSSTTHHHHHHT
T ss_pred EecCCCCHHHHHHHHHHhhcC--------CCeEEEEcchhhc-CCCcccCCEEE----EcC------CCCCHHHhhhhcc
Confidence 4566665 233444332 3345556666663 899995 5444 254 3446799999999
Q ss_pred ccCCCCccccceEEEECCcccHHHHHH
Q psy13788 181 RAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 181 RAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
||||.|- .|.++++....+......
T Consensus 381 RagR~g~--~g~~i~~~~~~e~~~~~~ 405 (579)
T 3sqw_A 381 RTARSGK--EGSSVLFICKDELPFVRE 405 (579)
T ss_dssp TSSCTTC--CEEEEEEEEGGGHHHHHH
T ss_pred ccccCCC--CceEEEEEcccHHHHHHH
Confidence 9999984 689999988866444443
No 97
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.85 E-value=3e-09 Score=122.75 Aligned_cols=164 Identities=12% Similarity=0.140 Sum_probs=83.4
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhhhhhHHHhhcc-c--------------------
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAY-H-------------------- 62 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------- 62 (1034)
.+.+++|||||+|.+.+ +.+..+..++.++ ....++++++++.+-........+ .
T Consensus 181 ~~~~~~vViDEah~~~~~~~~~~~~~~~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (414)
T 3eiq_A 181 PKYIKMFVLDEADEMLSRGFKDQIYDIFQKL---NSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQF 257 (414)
T ss_dssp STTCCEEEECSHHHHHHTTTHHHHHHHHTTS---CTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEE
T ss_pred cccCcEEEEECHHHhhccCcHHHHHHHHHhC---CCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEE
Confidence 45689999999999888 8888888777663 345678888875321111000000 0
Q ss_pred ---------------------cCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhHH-----H
Q psy13788 63 ---------------------TNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGILD-----V 115 (1034)
Q Consensus 63 ---------------------~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~~-----~ 115 (1034)
+.++++||+++ .. .+..+.+.+.+. ..++ .+|+++.. +
T Consensus 258 ~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~-----~~----~~~~l~~~l~~~------~~~~~~~h~~~~~~~r~~~ 322 (414)
T 3eiq_A 258 YINVEREEWKLDTLCDLYETLTITQAVIFINT-----RR----KVDWLTEKMHAR------DFTVSAMHGDMDQKERDVI 322 (414)
T ss_dssp EEECSSSTTHHHHHHHHHHSSCCSSCEEECSC-----HH----HHHHHHHHHHTT------TCCCEEC---CHHHHHHHH
T ss_pred EEEeChHHhHHHHHHHHHHhCCCCcEEEEeCC-----HH----HHHHHHHHHHhc------CCeEEEecCCCCHHHHHHH
Confidence 11234444443 00 111122222211 1234 45666652 2
Q ss_pred HHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEE
Q psy13788 116 LQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHAT 194 (1034)
Q Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~ 194 (1034)
.+.|..+ .....++|..++ .|||+|. .+||. |+ .+.++.+|.||+|||||.|- .|.++
T Consensus 323 ~~~f~~g--------~~~vlv~T~~~~-~Gidip~v~~Vi~----~~------~p~s~~~~~Qr~GR~gR~g~--~g~~~ 381 (414)
T 3eiq_A 323 MREFRSG--------SSRVLITTDLLA-RGIDVQQVSLVIN----YD------LPTNRENYIHRIGRGGRFGR--KGVAI 381 (414)
T ss_dssp HHHHSCC-----------CEEECSSCC---CCGGGCSCEEE----SS------CCSSTHHHHHHSCCC---------CEE
T ss_pred HHHHHcC--------CCcEEEECCccc-cCCCccCCCEEEE----eC------CCCCHHHhhhhcCcccCCCC--CceEE
Confidence 3334222 234444555555 3899996 44442 44 24467999999999999884 69999
Q ss_pred EECCcccHHHHHH
Q psy13788 195 IITPHEKLNHYLS 207 (1034)
Q Consensus 195 i~~~~~~~~~y~~ 207 (1034)
+++..++...+..
T Consensus 382 ~~~~~~~~~~~~~ 394 (414)
T 3eiq_A 382 NMVTEEDKRTLRD 394 (414)
T ss_dssp EEECSTHHHHHHH
T ss_pred EEEcHHHHHHHHH
Confidence 9998866555443
No 98
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.85 E-value=8e-09 Score=118.18 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=44.6
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
...++|..++ .|||+|. .+||. ||.......+.++.+|.||+|||||.|- .|.+++++..++...+..
T Consensus 295 ~vlv~T~~~~-~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~~~~~~~~ 363 (395)
T 3pey_A 295 KVLITTNVLA-RGIDIPTVSMVVN----YDLPTLANGQADPATYIHRIGRTGRFGR--KGVAISFVHDKNSFNILS 363 (395)
T ss_dssp CEEEECGGGS-SSCCCTTEEEEEE----SSCCBCTTSSBCHHHHHHHHTTSSCTTC--CEEEEEEECSHHHHHHHH
T ss_pred CEEEECChhh-cCCCcccCCEEEE----cCCCCCCcCCCCHHHhhHhccccccCCC--CceEEEEEechHHHHHHH
Confidence 3445555555 3899996 44442 3322111245788999999999999884 689999988754444443
No 99
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.83 E-value=6.9e-09 Score=119.83 Aligned_cols=165 Identities=19% Similarity=0.234 Sum_probs=91.9
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhh-hccccceeecccchhh--hhhHHHhh---------------------
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTL-RQIGQEVFKGVKSLNR--IQSLVYDT--------------------- 59 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~--------------------- 59 (1034)
.+++++|||||+|.+.+ +.+..++.++.+.. ......++++++++.+ +.......
T Consensus 173 ~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 252 (417)
T 2i4i_A 173 LDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 252 (417)
T ss_dssp CTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEE
T ss_pred hhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceE
Confidence 56789999999999998 88888888876521 1122467888777432 11111000
Q ss_pred -------------------ccccCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhH-----H
Q psy13788 60 -------------------AYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGIL-----D 114 (1034)
Q Consensus 60 -------------------~~~~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~-----~ 114 (1034)
...++.+++||+++ + .. +..+.+.+.+. ...+ .+|+++. +
T Consensus 253 ~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~---~--~~----~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~ 317 (417)
T 2i4i_A 253 KVVWVEESDKRSFLLDLLNATGKDSLTLVFVET---K--KG----ADSLEDFLYHE------GYACTSIHGDRSQRDREE 317 (417)
T ss_dssp EEEECCGGGHHHHHHHHHHTCCTTCEEEEECSS---H--HH----HHHHHHHHHHT------TCCEEEECTTSCHHHHHH
T ss_pred EEEEeccHhHHHHHHHHHHhcCCCCeEEEEECC---H--HH----HHHHHHHHHHC------CCCeeEecCCCCHHHHHH
Confidence 00012235555544 1 11 11112222210 1234 4566665 2
Q ss_pred HHHHhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceE
Q psy13788 115 VLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHA 193 (1034)
Q Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ 193 (1034)
..+.|..+ .....++|..++ .|+|+|. .+||. || .+.++.+|.||+|||||.|- .|.+
T Consensus 318 ~~~~f~~g--------~~~vlvaT~~~~-~Gidip~v~~Vi~----~~------~p~s~~~~~Qr~GR~gR~g~--~g~~ 376 (417)
T 2i4i_A 318 ALHQFRSG--------KSPILVATAVAA-RGLDISNVKHVIN----FD------LPSDIEEYVHRIGRTGRVGN--LGLA 376 (417)
T ss_dssp HHHHHHHT--------SSCEEEECHHHH-TTSCCCCEEEEEE----SS------CCSSHHHHHHHHTTBCC--C--CEEE
T ss_pred HHHHHHcC--------CCCEEEECChhh-cCCCcccCCEEEE----Ec------CCCCHHHHHHhcCccccCCC--CceE
Confidence 33344332 234455555555 3899997 55542 44 24567999999999999984 6999
Q ss_pred EEECCcccHHHH
Q psy13788 194 TIITPHEKLNHY 205 (1034)
Q Consensus 194 ~i~~~~~~~~~y 205 (1034)
+++....+....
T Consensus 377 ~~~~~~~~~~~~ 388 (417)
T 2i4i_A 377 TSFFNERNINIT 388 (417)
T ss_dssp EEEECGGGGGGH
T ss_pred EEEEccccHHHH
Confidence 999887554333
No 100
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.82 E-value=9.3e-09 Score=118.02 Aligned_cols=163 Identities=13% Similarity=0.175 Sum_probs=91.1
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhhh--hhHHHhhccc-------------------
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNRI--QSLVYDTAYH------------------- 62 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------------------- 62 (1034)
.+++++|||||+|.+.+ +.+..++.++..+ ....++++++++.+. ..........
T Consensus 161 ~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~---~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (400)
T 1s2m_A 161 LSDCSLFIMDEADKMLSRDFKTIIEQILSFL---PPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYY 237 (400)
T ss_dssp CTTCCEEEEESHHHHSSHHHHHHHHHHHTTS---CSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEE
T ss_pred cccCCEEEEeCchHhhhhchHHHHHHHHHhC---CcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEE
Confidence 46789999999999888 7777777666542 234567777764331 1111110000
Q ss_pred -------------------cCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhH-----HHHH
Q psy13788 63 -------------------TNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGIL-----DVLQ 117 (1034)
Q Consensus 63 -------------------~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~-----~~~~ 117 (1034)
+..+++||+++. ..+ ..+.+.+.+ ...++ .+|+++. ++.+
T Consensus 238 ~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~-----~~~----~~l~~~L~~------~~~~~~~~~~~~~~~~r~~~~~ 302 (400)
T 1s2m_A 238 AFVEERQKLHCLNTLFSKLQINQAIIFCNST-----NRV----ELLAKKITD------LGYSCYYSHARMKQQERNKVFH 302 (400)
T ss_dssp EECCGGGHHHHHHHHHHHSCCSEEEEECSSH-----HHH----HHHHHHHHH------HTCCEEEECTTSCHHHHHHHHH
T ss_pred EEechhhHHHHHHHHHhhcCCCcEEEEEecH-----HHH----HHHHHHHHh------cCCCeEEecCCCCHHHHHHHHH
Confidence 122355555441 111 111112211 01234 4566665 2334
Q ss_pred HhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEE
Q psy13788 118 IFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATII 196 (1034)
Q Consensus 118 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~ 196 (1034)
.|..+ .....++|..++ .|+|+|+ .+||. |+ .+.++.+|.||+|||||.|- .|.++++
T Consensus 303 ~f~~g--------~~~vLv~T~~~~-~Gidip~~~~Vi~----~~------~p~s~~~~~Qr~GR~gR~g~--~g~~~~l 361 (400)
T 1s2m_A 303 EFRQG--------KVRTLVCSDLLT-RGIDIQAVNVVIN----FD------FPKTAETYLHRIGRSGRFGH--LGLAINL 361 (400)
T ss_dssp HHHTT--------SSSEEEESSCSS-SSCCCTTEEEEEE----SS------CCSSHHHHHHHHCBSSCTTC--CEEEEEE
T ss_pred HHhcC--------CCcEEEEcCccc-cCCCccCCCEEEE----eC------CCCCHHHHHHhcchhcCCCC--CceEEEE
Confidence 44332 233444444444 3899996 55552 44 24567899999999999984 6999999
Q ss_pred CCcccHHHHH
Q psy13788 197 TPHEKLNHYL 206 (1034)
Q Consensus 197 ~~~~~~~~y~ 206 (1034)
...++.....
T Consensus 362 ~~~~~~~~~~ 371 (400)
T 1s2m_A 362 INWNDRFNLY 371 (400)
T ss_dssp ECGGGHHHHH
T ss_pred eccchHHHHH
Confidence 8886544433
No 101
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.77 E-value=3.1e-08 Score=117.39 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=48.3
Q ss_pred ccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHhc
Q psy13788 132 LGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLT 210 (1034)
Q Consensus 132 l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~~ 210 (1034)
+...++|..+.+ |||+|. ++||. |+ .+-++.+|.||+|||||.|. .|.++++...++......++.
T Consensus 287 ~~vlVaT~a~~~-GiD~p~v~~VI~----~~------~p~s~~~y~Qr~GRaGR~g~--~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 287 LQIVVATVAFGM-GINKPNVRFVVH----FD------IPRNIESYYQETGRAGRDGL--PAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp CSEEEECTTSCT-TTCCTTCCEEEE----SS------CCSSHHHHHHHHTTSCTTSS--CEEEEEEECHHHHHHHHHHHH
T ss_pred CeEEEEechhhC-CCCccCccEEEE----EC------CCCCHHHHHHHhccccCCCC--CceEEEEeCHHHHHHHHHHHh
Confidence 345555556664 899996 54442 44 34578999999999999886 689999988877666666665
Q ss_pred C
Q psy13788 211 N 211 (1034)
Q Consensus 211 ~ 211 (1034)
.
T Consensus 354 ~ 354 (523)
T 1oyw_A 354 E 354 (523)
T ss_dssp T
T ss_pred c
Confidence 4
No 102
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.76 E-value=1.9e-09 Score=127.04 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
.....++|..++ .|+|+|. ++||. ||.......+.+..+|.||+|||||.| ..|.+++++.......|.+
T Consensus 383 ~~~iLv~T~~~~-~GlDip~v~~VI~----~d~p~~~~~~~s~~~~~Qr~GRagR~g--~~G~~i~~~~~~~~~~~~~ 453 (479)
T 3fmp_B 383 KEKVLVTTNVCA-RGIDVEQVSVVIN----FDLPVDKDGNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKHSMNILN 453 (479)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCcEEEEccccc-cCCccccCCEEEE----ecCCCCCccCCCHHHHHHHhcccccCC--CCceEEEEEcCcchHHHHH
Confidence 334455555555 3899997 55552 442211113467789999999999987 4799999998765444544
No 103
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.74 E-value=2.3e-08 Score=115.11 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=41.5
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHH
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNH 204 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~ 204 (1034)
...++|..++ .|+|+|. .+||. || .+-++.+|.||+|||||.| ..|.++++...++...
T Consensus 328 ~vlv~T~~~~-~Gidi~~v~~Vi~----~~------~p~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~ 387 (410)
T 2j0s_A 328 RVLISTDVWA-RGLDVPQVSLIIN----YD------LPNNRELYIHRIGRSGRYG--RKGVAINFVKNDDIRI 387 (410)
T ss_dssp CEEEECGGGS-SSCCCTTEEEEEE----SS------CCSSHHHHHHHHTTSSGGG--CCEEEEEEEEGGGHHH
T ss_pred CEEEECChhh-CcCCcccCCEEEE----EC------CCCCHHHHHHhcccccCCC--CceEEEEEecHHHHHH
Confidence 3445555555 3899996 55542 54 2346789999999999987 4799999988765433
No 104
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.73 E-value=2.9e-08 Score=112.22 Aligned_cols=162 Identities=14% Similarity=0.180 Sum_probs=90.3
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhhhh--hHH--Hhh--cc----------------
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNRIQ--SLV--YDT--AY---------------- 61 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~--~~---------------- 61 (1034)
.+++++|||||+|.+.+ .....++.++... ....++++++++..-. ... +.. .+
T Consensus 145 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (367)
T 1hv8_A 145 LKNVKYFILDEADEMLNMGFIKDVEKILNAC---NKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANIEQSYVEV 221 (367)
T ss_dssp TTSCCEEEEETHHHHHTTTTHHHHHHHHHTS---CSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSSSSEEEEEEC
T ss_pred cccCCEEEEeCchHhhhhchHHHHHHHHHhC---CCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCCCceEEEEEe
Confidence 46789999999999988 6666666655442 2346778877643311 110 000 00
Q ss_pred --------------ccCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhH-----HHHHHhhh
Q psy13788 62 --------------HTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGIL-----DVLQIFGR 121 (1034)
Q Consensus 62 --------------~~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~-----~~~~~~~~ 121 (1034)
.++..++||+++ ... +..+.+.+.+. ..++ .+|+++. +..+.|..
T Consensus 222 ~~~~~~~~l~~~l~~~~~~~lvf~~~-----~~~----~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~ 286 (367)
T 1hv8_A 222 NENERFEALCRLLKNKEFYGLVFCKT-----KRD----TKELASMLRDI------GFKAGAIHGDLSQSQREKVIRLFKQ 286 (367)
T ss_dssp CGGGHHHHHHHHHCSTTCCEEEECSS-----HHH----HHHHHHHHHHT------TCCEEEECSSSCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhcCCCcEEEEECC-----HHH----HHHHHHHHHhc------CCCeEEeeCCCCHHHHHHHHHHHHc
Confidence 122345666654 111 11222222211 1223 4466554 23334433
Q ss_pred cCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcc
Q psy13788 122 AGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE 200 (1034)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~ 200 (1034)
+ .....++|..+.. |+|+|. .+||. |+ .+.++.+|.||+|||||.|. .|.++++....
T Consensus 287 ~--------~~~vlv~T~~~~~-Gid~~~~~~Vi~----~~------~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~ 345 (367)
T 1hv8_A 287 K--------KIRILIATDVMSR-GIDVNDLNCVIN----YH------LPQNPESYMHRIGRTGRAGK--KGKAISIINRR 345 (367)
T ss_dssp T--------SSSEEEECTTHHH-HCCCSCCSEEEE----SS------CCSCHHHHHHHSTTTCCSSS--CCEEEEEECTT
T ss_pred C--------CCeEEEECChhhc-CCCcccCCEEEE----ec------CCCCHHHhhhcccccccCCC--ccEEEEEEcHH
Confidence 2 3344555555553 899996 44442 33 34567999999999999985 68888888775
Q ss_pred cHHHH
Q psy13788 201 KLNHY 205 (1034)
Q Consensus 201 ~~~~y 205 (1034)
+...+
T Consensus 346 ~~~~~ 350 (367)
T 1hv8_A 346 EYKKL 350 (367)
T ss_dssp SHHHH
T ss_pred HHHHH
Confidence 54443
No 105
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.72 E-value=6.9e-09 Score=122.86 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=29.2
Q ss_pred ccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCc
Q psy13788 134 RTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 134 ~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~ 199 (1034)
..++|..++ .|||+|. .+||. ||.......+.++.+|.||+|||||.|. .|.++++...
T Consensus 410 VLVaT~~l~-~GiDip~v~~VI~----~~~p~~~~~~~s~~~~~Qr~GRagR~g~--~g~~i~l~~~ 469 (508)
T 3fho_A 410 VLVTTNVIA-RGIDVSQVNLVVN----YDMPLDQAGRPDPQTYLHRIGRTGRFGR--VGVSINFVHD 469 (508)
T ss_dssp CCEECC------CCCTTCCEEEC--------CC-----CTHHHHHTTSCCC-------CEEEEEECT
T ss_pred EEEeCChhh-cCCCccCCCEEEE----ECCCCcccCCCCHHHHHHHhhhcCCCCC--CcEEEEEEeC
Confidence 344444444 3899996 44442 3322211234778999999999999884 6888888764
No 106
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.68 E-value=4.4e-08 Score=113.60 Aligned_cols=158 Identities=15% Similarity=0.193 Sum_probs=89.5
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh--hhhHHHhhccc-------------------
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR--IQSLVYDTAYH------------------- 62 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------------------- 62 (1034)
.+++++||+||+|.+.| +.+..+..++..+ ......|++++|++.+ +....-.....
T Consensus 201 l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~-~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~ 279 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMGFSEDMRRIMTHV-TMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQT 279 (434)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHCT-TSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEE
T ss_pred cccCCeEEEccHhhhhccCcHHHHHHHHHhc-CCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceE
Confidence 57899999999999999 8888888887763 2244567888877432 22111000000
Q ss_pred -------------------cCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhH-----HHHH
Q psy13788 63 -------------------TNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGIL-----DVLQ 117 (1034)
Q Consensus 63 -------------------~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~-----~~~~ 117 (1034)
....++||+++ +. . +..+.+.+.+. ...+ .+|+++. ...+
T Consensus 280 ~~~~~~~~k~~~l~~~l~~~~~~~lVF~~t---~~--~----a~~l~~~L~~~------~~~~~~lhg~~~~~~R~~~l~ 344 (434)
T 2db3_A 280 IYEVNKYAKRSKLIEILSEQADGTIVFVET---KR--G----ADFLASFLSEK------EFPTTSIHGDRLQSQREQALR 344 (434)
T ss_dssp EEECCGGGHHHHHHHHHHHCCTTEEEECSS---HH--H----HHHHHHHHHHT------TCCEEEESTTSCHHHHHHHHH
T ss_pred EEEeCcHHHHHHHHHHHHhCCCCEEEEEeC---cH--H----HHHHHHHHHhC------CCCEEEEeCCCCHHHHHHHHH
Confidence 01124444443 11 0 11122222211 1223 4566655 2233
Q ss_pred HhhhcCCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEE
Q psy13788 118 IFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATII 196 (1034)
Q Consensus 118 ~~~~~~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~ 196 (1034)
.|..+ .....++|..++ .|+|+|. .+||. || .+.++.+|.||+|||||.|- .|.++++
T Consensus 345 ~F~~g--------~~~vLvaT~v~~-rGlDi~~v~~VI~----~d------~p~~~~~y~qriGR~gR~g~--~G~a~~~ 403 (434)
T 2db3_A 345 DFKNG--------SMKVLIATSVAS-RGLDIKNIKHVIN----YD------MPSKIDDYVHRIGRTGRVGN--NGRATSF 403 (434)
T ss_dssp HHHTS--------SCSEEEECGGGT-SSCCCTTCCEEEE----SS------CCSSHHHHHHHHTTSSCTTC--CEEEEEE
T ss_pred HHHcC--------CCcEEEEchhhh-CCCCcccCCEEEE----EC------CCCCHHHHHHHhcccccCCC--CCEEEEE
Confidence 34332 233444454444 3899996 44442 54 23567999999999999985 6888888
Q ss_pred CCc
Q psy13788 197 TPH 199 (1034)
Q Consensus 197 ~~~ 199 (1034)
..+
T Consensus 404 ~~~ 406 (434)
T 2db3_A 404 FDP 406 (434)
T ss_dssp ECT
T ss_pred Eec
Confidence 874
No 107
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.68 E-value=2.9e-08 Score=113.43 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=42.5
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
...++|..+. .|+|+|. .+||. |+ .+.++.+|.||+|||||.| ..|.++++..+++...+..
T Consensus 302 ~vlv~T~~~~-~Gidi~~~~~Vi~----~~------~p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~ 364 (391)
T 1xti_A 302 RILVATNLFG-RGMDIERVNIAFN----YD------MPEDSDTYLHRVARAGRFG--TKGLAITFVSDENDAKILN 364 (391)
T ss_dssp SEEEESCCCS-SCBCCTTEEEEEE----SS------CCSSHHHHHHHHCBCSSSC--CCCEEEEEECSHHHHHHHH
T ss_pred cEEEECChhh-cCCCcccCCEEEE----eC------CCCCHHHHHHhcccccCCC--CceEEEEEEcccchHHHHH
Confidence 3444444444 3899995 55542 44 2346799999999999998 5799999988754444443
No 108
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.66 E-value=1.2e-07 Score=113.60 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=49.4
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHHHh
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLL 209 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~~~ 209 (1034)
.+...++|..+++ |||+|. +.|| .|+ .+-++..|.||+|||||.|- .|.++++....+......++
T Consensus 317 ~~~VlVAT~a~~~-GID~p~V~~VI----~~~------~p~s~~~y~Qr~GRaGR~G~--~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 317 EIQVVVATVAFGM-GIDKPDVRFVI----HHS------MSKSMENYYQESGRAGRDDM--KADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp SSSEEEECTTSCT-TCCCSCEEEEE----ESS------CCSSHHHHHHHHTTSCTTSS--CEEEEEEECHHHHHHHHHHT
T ss_pred CCeEEEEechhhc-CCCcccccEEE----EeC------CCCCHHHHHHHhccCCcCCC--CceEEEEEChHHHHHHHHHH
Confidence 3455666666665 899996 5555 354 34467999999999999875 79999998887766666655
Q ss_pred c
Q psy13788 210 T 210 (1034)
Q Consensus 210 ~ 210 (1034)
.
T Consensus 384 ~ 384 (591)
T 2v1x_A 384 V 384 (591)
T ss_dssp T
T ss_pred h
Confidence 4
No 109
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.66 E-value=2.8e-08 Score=98.37 Aligned_cols=77 Identities=10% Similarity=0.165 Sum_probs=64.1
Q ss_pred HHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCC
Q psy13788 917 IYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAE 996 (1034)
Q Consensus 917 ~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~ 996 (1034)
+.+.+... .++++||||++++.|+.++..|... +.++..+||+|+
T Consensus 26 L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------~~~~~~~hg~~~ 70 (163)
T 2hjv_A 26 LKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDL----------------------------------GYPCDKIHGGMI 70 (163)
T ss_dssp HHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHT----------------------------------TCCEEEECTTSC
T ss_pred HHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHc----------------------------------CCcEEEEeCCCC
Confidence 44444443 4569999999999999998877542 223789999999
Q ss_pred HHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 997 AAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 997 ~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+.+|..+++ . |++|+++|||||+++++|+ |+.
T Consensus 71 ~~~r~~~~~--~--f~~g~~~vlv~T~~~~~Gl-d~~ 102 (163)
T 2hjv_A 71 QEDRFDVMN--E--FKRGEYRYLVATDVAARGI-DIE 102 (163)
T ss_dssp HHHHHHHHH--H--HHTTSCSEEEECGGGTTTC-CCS
T ss_pred HHHHHHHHH--H--HHcCCCeEEEECChhhcCC-chh
Confidence 999999877 7 9999999999999999999 985
No 110
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.65 E-value=4.1e-08 Score=97.44 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=64.0
Q ss_pred HHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCC
Q psy13788 917 IYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAE 996 (1034)
Q Consensus 917 ~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~ 996 (1034)
+.+.+... ..+++||||++++.|+.++..|... +.++..+||+|+
T Consensus 21 l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------~~~~~~~~~~~~ 65 (165)
T 1fuk_A 21 LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRND----------------------------------KFTVSAIYSDLP 65 (165)
T ss_dssp HHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHT----------------------------------TCCEEEECTTSC
T ss_pred HHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHc----------------------------------CCCEEEEECCCC
Confidence 34444443 5679999999999999988877542 223789999999
Q ss_pred HHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 997 AAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 997 ~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+.+|..+++ . |++|+++|||||+++++|+ |+.
T Consensus 66 ~~~r~~~~~--~--f~~g~~~vlv~T~~~~~G~-d~~ 97 (165)
T 1fuk_A 66 QQERDTIMK--E--FRSGSSRILISTDLLARGI-DVQ 97 (165)
T ss_dssp HHHHHHHHH--H--HHTTSCSEEEEEGGGTTTC-CCC
T ss_pred HHHHHHHHH--H--HHcCCCEEEEEcChhhcCC-Ccc
Confidence 999999977 7 9999999999999999999 985
No 111
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.65 E-value=2.4e-08 Score=100.18 Aligned_cols=78 Identities=13% Similarity=0.245 Sum_probs=64.2
Q ss_pred HHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCC
Q psy13788 916 PIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAA 995 (1034)
Q Consensus 916 ~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~ 995 (1034)
.+.+.+... ..+++||||++++.|+.++..|... +.++..+||+|
T Consensus 24 ~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------~~~~~~~~g~~ 68 (175)
T 2rb4_A 24 ALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQD----------------------------------GHQVSLLSGEL 68 (175)
T ss_dssp HHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTT----------------------------------TCCEEEECSSC
T ss_pred HHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHc----------------------------------CCcEEEEeCCC
Confidence 344444443 5679999999999999888877542 22488999999
Q ss_pred CHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 996 EAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 996 ~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++.+|..+++ . |++|+++|||||+++++|+ |+.
T Consensus 69 ~~~~R~~~~~--~--f~~g~~~vLvaT~~~~~Gi-d~~ 101 (175)
T 2rb4_A 69 TVEQRASIIQ--R--FRDGKEKVLITTNVCARGI-DVK 101 (175)
T ss_dssp CHHHHHHHHH--H--HHTTSCSEEEECCSCCTTT-CCT
T ss_pred CHHHHHHHHH--H--HHcCCCeEEEEecchhcCC-Ccc
Confidence 9999999977 7 9999999999999999999 985
No 112
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.64 E-value=4.2e-08 Score=113.61 Aligned_cols=165 Identities=12% Similarity=0.072 Sum_probs=84.1
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhhhh--hHH---------------------Hhhc
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNRIQ--SLV---------------------YDTA 60 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~~~--~~~---------------------~~~~ 60 (1034)
.+++++|||||+|.+ | ..+..+. .+.+.+ .....++++||++..-. .+. +...
T Consensus 97 ~~~l~~vViDEah~~-~~~~~~~~~-~~~~~~-~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (440)
T 1yks_A 97 VVNWEVIIMDEAHFL-DPASIAARG-WAAHRA-RANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWI 173 (440)
T ss_dssp CCCCSEEEETTTTCC-SHHHHHHHH-HHHHHH-HTTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCHHH
T ss_pred ccCccEEEEECcccc-CcchHHHHH-HHHHHh-ccCCceEEEEeCCCCchhhhhhhcCCCeeEeeeccChHHHHHHHHHH
Confidence 578999999999999 3 3322222 222212 22457888888743211 000 0000
Q ss_pred cccCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhH-HHHHHhhhcCCCccccccccccccc
Q psy13788 61 YHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGIL-DVLQIFGRAGRPQYNTSDLGRTASN 138 (1034)
Q Consensus 61 ~~~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~ 138 (1034)
.+.+.+++||+++. . .+..++..+.+. +. .+ .+|.... .+.+.|..+ .+...++|
T Consensus 174 ~~~~~~~lVF~~s~---~--~a~~l~~~L~~~---~~-------~v~~lhg~~R~~~~~~F~~g--------~~~vLVaT 230 (440)
T 1yks_A 174 LADKRPTAWFLPSI---R--AANVMAASLRKA---GK-------SVVVLNRKTFEREYPTIKQK--------KPDFILAT 230 (440)
T ss_dssp HHCCSCEEEECSCH---H--HHHHHHHHHHHT---TC-------CEEECCSSSCC--------C--------CCSEEEES
T ss_pred HhcCCCEEEEeCCH---H--HHHHHHHHHHHc---CC-------CEEEecchhHHHHHhhhcCC--------CceEEEEC
Confidence 00245689999871 1 111222222221 11 23 3344221 233334332 34445555
Q ss_pred hhhhccCcccce-EEEecCcee----ecCCCC----eeeecChhhHHHHhhccCCCCccccceEEEEC
Q psy13788 139 YYIKHNDIELFT-EHMTKGTEM----YNAKHG----CYVHIGILDVLQIFGRAGRPQYNTSGHATIIT 197 (1034)
Q Consensus 139 ~~~~~~gvn~pa-~vii~~~~~----~~~~~~----~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~ 197 (1034)
..++. |||+|+ .||..|+.+ .++..+ .-.+.+..+|.||+|||||.|- ..|.++++.
T Consensus 231 ~v~e~-GiDipv~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~-~~g~~~~l~ 296 (440)
T 1yks_A 231 DIAEM-GANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN-RDGDSYYYS 296 (440)
T ss_dssp SSTTC-CTTCCCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEEEEEC
T ss_pred Chhhe-eeccCceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCC-CCceEEEEe
Confidence 55553 899997 566556544 111110 0156889999999999999742 379999995
No 113
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.63 E-value=5.1e-09 Score=119.86 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHH
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLN 203 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~ 203 (1034)
.....++|..+. .|+|+|+ .+||. |+ .+.++.+|.||+|||||.|- .|.++++...++..
T Consensus 309 ~~~vlv~T~~~~-~Gldi~~~~~Vi~----~~------~p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~~~ 369 (394)
T 1fuu_A 309 SSRILISTDLLA-RGIDVQQVSLVIN----YD------LPANKENYIHRIGRGGRFGR--KGVAINFVTNEDVG 369 (394)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCcEEEECChhh-cCCCcccCCEEEE----eC------CCCCHHHHHHHcCcccCCCC--CceEEEEEchhHHH
Confidence 334555555555 3899997 45542 43 24466899999999999884 68999888876533
No 114
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.62 E-value=3.3e-08 Score=98.78 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=64.6
Q ss_pred HHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCC
Q psy13788 916 PIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAA 995 (1034)
Q Consensus 916 ~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~ 995 (1034)
.+.+.+... ..+++||||++++.|+.++..|... +.++..+||+|
T Consensus 21 ~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------~~~~~~~hg~~ 65 (172)
T 1t5i_A 21 KLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQ----------------------------------NFPAIAIHRGM 65 (172)
T ss_dssp HHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHT----------------------------------TCCEEEECTTS
T ss_pred HHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhc----------------------------------CCCEEEEECCC
Confidence 344455443 5679999999999999988877542 22378999999
Q ss_pred CHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 996 EAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 996 ~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++.+|..+++ . |++|+++|||||+++++|+ |+.
T Consensus 66 ~~~~r~~~~~--~--f~~g~~~vLvaT~~~~~Gl-di~ 98 (172)
T 1t5i_A 66 PQEERLSRYQ--Q--FKDFQRRILVATNLFGRGM-DIE 98 (172)
T ss_dssp CHHHHHHHHH--H--HHTTSCSEEEESSCCSTTC-CGG
T ss_pred CHHHHHHHHH--H--HHCCCCcEEEECCchhcCc-chh
Confidence 9999999977 7 9999999999999999999 974
No 115
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.61 E-value=4.6e-08 Score=101.34 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=64.3
Q ss_pred HHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCC
Q psy13788 917 IYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAE 996 (1034)
Q Consensus 917 ~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~ 996 (1034)
+.+.+... .++++||||++++.++.++..|... +.++..+||+|+
T Consensus 22 l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------~~~~~~lhg~~~ 66 (212)
T 3eaq_A 22 LSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRL----------------------------------GHPAQALHGDLS 66 (212)
T ss_dssp HHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHH----------------------------------TCCEEEECSSSC
T ss_pred HHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHc----------------------------------CCCEEEEECCCC
Confidence 34444443 4679999999999999988877653 223789999999
Q ss_pred HHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 997 AAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 997 ~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+++|+.+.+ . |++|+++|||||+++++|+ |+.
T Consensus 67 ~~~r~~~~~--~--f~~g~~~vlvaT~~~~~Gi-di~ 98 (212)
T 3eaq_A 67 QGERERVLG--A--FRQGEVRVLVATDVAARGL-DIP 98 (212)
T ss_dssp HHHHHHHHH--H--HHSSSCCEEEECTTTTCSS-SCC
T ss_pred HHHHHHHHH--H--HHCCCCeEEEecChhhcCC-CCc
Confidence 999999987 7 9999999999999999999 985
No 116
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.61 E-value=2.4e-08 Score=101.04 Aligned_cols=79 Identities=10% Similarity=0.142 Sum_probs=52.0
Q ss_pred HHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCC
Q psy13788 916 PIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAA 995 (1034)
Q Consensus 916 ~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~ 995 (1034)
.+.+.+.....+.++||||++++.|+.++..|... +.++..+||+|
T Consensus 35 ~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----------------------------------g~~~~~lhg~~ 80 (185)
T 2jgn_A 35 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE----------------------------------GYACTSIHGDR 80 (185)
T ss_dssp HHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT----------------------------------TCCEEEEC---
T ss_pred HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc----------------------------------CCceEEEeCCC
Confidence 45566666556789999999999999988877542 22378999999
Q ss_pred CHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 996 EAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 996 ~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++.+|..+.+ . |++|+++|||||+++++|+ |+.
T Consensus 81 ~~~~r~~~~~--~--f~~g~~~vLvaT~~~~~Gl-di~ 113 (185)
T 2jgn_A 81 SQRDREEALH--Q--FRSGKSPILVATAVAARGL-DIS 113 (185)
T ss_dssp -----CHHHH--H--HHHTSSSEEEEEC-------CCC
T ss_pred CHHHHHHHHH--H--HHcCCCeEEEEcChhhcCC-Ccc
Confidence 9999988877 6 9999999999999999999 985
No 117
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.61 E-value=6.7e-08 Score=111.46 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=38.7
Q ss_pred chhhhccCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCcc--ccceEEEECCc
Q psy13788 138 NYYIKHNDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYN--TSGHATIITPH 199 (1034)
Q Consensus 138 ~~~~~~~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d--~~G~~~i~~~~ 199 (1034)
|..++ .|+|+|. ..|| .||... ..++.+|.||+|||||.|.+ ..|.+++++++
T Consensus 308 T~~~~-~GiDip~~v~~VI----~~~~p~----~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~ 364 (414)
T 3oiy_A 308 YGKLT-RGVDLPERIKYVI----FWGTPS----GPDVYTYIQASGRSSRILNGVLVKGVSVIFEED 364 (414)
T ss_dssp TCCCC-CCCCCTTTCCEEE----EESCCT----TTCHHHHHHHHGGGCCEETTEECCEEEEEECCC
T ss_pred Cchhh-ccCccccccCEEE----EECCCC----CCCHHHHHHHhCccccCCCCCCcceEEEEEEcc
Confidence 33344 3899996 4554 254211 15689999999999999998 69999999955
No 118
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.60 E-value=6.1e-08 Score=108.18 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=38.7
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECC
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITP 198 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~ 198 (1034)
.....++|..+.. |+|+|. .+||. |+ .+.++.+|.||+|||||.|. .|.++++..
T Consensus 266 ~~~vlv~T~~~~~-Gid~~~~~~Vi~----~~------~~~s~~~~~Q~~GR~gR~g~--~g~~~~~~~ 321 (337)
T 2z0m_A 266 EYDMLITTDVASR-GLDIPLVEKVIN----FD------APQDLRTYIHRIGRTGRMGR--KGEAITFIL 321 (337)
T ss_dssp SCSEEEECHHHHT-TCCCCCBSEEEE----SS------CCSSHHHHHHHHTTBCGGGC--CEEEEEEES
T ss_pred CCcEEEEcCcccc-CCCccCCCEEEE----ec------CCCCHHHhhHhcCccccCCC--CceEEEEEe
Confidence 3455566666663 899996 44442 44 23467999999999999985 577777776
No 119
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=98.53 E-value=1.1e-07 Score=96.60 Aligned_cols=77 Identities=12% Similarity=0.210 Sum_probs=63.7
Q ss_pred HHHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCC
Q psy13788 916 PIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAA 995 (1034)
Q Consensus 916 ~~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~ 995 (1034)
.+.+.+... ++++||||++++.++.++..|... +..+..+||+|
T Consensus 45 ~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------g~~~~~lhg~~ 88 (191)
T 2p6n_A 45 YLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLK----------------------------------GVEAVAIHGGK 88 (191)
T ss_dssp HHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHH----------------------------------TCCEEEECTTS
T ss_pred HHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHc----------------------------------CCcEEEEeCCC
Confidence 344455443 458999999999999998887653 22378899999
Q ss_pred CHHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 996 EAAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 996 ~~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
++.+|+.+.+ . |++|+++|||||+++++|+ |+.
T Consensus 89 ~~~~R~~~l~--~--F~~g~~~vLvaT~~~~~Gl-di~ 121 (191)
T 2p6n_A 89 DQEERTKAIE--A--FREGKKDVLVATDVASKGL-DFP 121 (191)
T ss_dssp CHHHHHHHHH--H--HHHTSCSEEEECHHHHTTC-CCC
T ss_pred CHHHHHHHHH--H--HhcCCCEEEEEcCchhcCC-Ccc
Confidence 9999999877 6 9999999999999999999 985
No 120
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.51 E-value=2e-07 Score=112.11 Aligned_cols=167 Identities=11% Similarity=0.032 Sum_probs=93.4
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhhhh--hHH------Hh--hc-------------
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNRIQ--SLV------YD--TA------------- 60 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~~~--~~~------~~--~~------------- 60 (1034)
++++++|||||+|.+ | ..+..++.++.++.+ ...|++++|++.+-. .+. +. ..
T Consensus 275 l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~--~~~q~il~SAT~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~l 351 (618)
T 2whx_A 275 VPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM--GEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWI 351 (618)
T ss_dssp CCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH--TSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCHHH
T ss_pred ccCCeEEEEECCCCC-CccHHHHHHHHHHHhcc--cCccEEEEECCCchhhhhhhccCCceeeecccCCHHHHHHHHHHH
Confidence 588999999999999 5 666677777666422 456788888743211 000 00 00
Q ss_pred cccCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccceecchhH-HHHHHhhhcCCCccccccccccccch
Q psy13788 61 YHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGIL-DVLQIFGRAGRPQYNTSDLGRTASNY 139 (1034)
Q Consensus 61 ~~~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~h~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (1034)
.....+++||+++ + ..+..+++.+.+. +.. -..+|.... ++.+.|..+ .+...++|.
T Consensus 352 ~~~~~~~LVF~~s---~--~~a~~l~~~L~~~---g~~------v~~lhg~~R~~~l~~F~~g--------~~~VLVaTd 409 (618)
T 2whx_A 352 TDYQGKTVWFVPS---I--KAGNDIANCLRKS---GKR------VIQLSRKTFDTEYPKTKLT--------DWDFVVTTD 409 (618)
T ss_dssp HHCCSCEEEECSS---H--HHHHHHHHHHHHT---TCC------EEEECTTTHHHHTTHHHHS--------CCSEEEECG
T ss_pred HhCCCCEEEEECC---h--hHHHHHHHHHHHc---CCc------EEEEChHHHHHHHHhhcCC--------CcEEEEECc
Confidence 0023468888877 2 1221222332221 111 123354322 233444333 233444444
Q ss_pred hhhccCcccce-EEEecCceee----cCCCCe-----eeecChhhHHHHhhccCCCCccccceEEEECC
Q psy13788 140 YIKHNDIELFT-EHMTKGTEMY----NAKHGC-----YVHIGILDVLQIFGRAGRPQYNTSGHATIITP 198 (1034)
Q Consensus 140 ~~~~~gvn~pa-~vii~~~~~~----~~~~~~-----~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~ 198 (1034)
.++. |||+|. .||..|..+. +...++ -.+.+..+|.||+|||||.|- ..|.++++..
T Consensus 410 v~~r-GiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~-~~G~ai~l~~ 476 (618)
T 2whx_A 410 ISEM-GANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QEDDQYVFSG 476 (618)
T ss_dssp GGGT-TCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEEEEECS
T ss_pred HHHc-CcccCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC-CCCeEEEEcc
Confidence 4442 899996 6777666322 111111 146889999999999999875 3688888886
No 121
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.47 E-value=3e-07 Score=106.92 Aligned_cols=167 Identities=10% Similarity=0.085 Sum_probs=91.2
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhhhhh--HHH------h-------hcc-------
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNRIQS--LVY------D-------TAY------- 61 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~~~~--~~~------~-------~~~------- 61 (1034)
++++++|||||+|++ | ..+..++.+..+. ...+.+++++|++.+-.. ... . ..|
T Consensus 108 l~~~~~iViDEah~~-~~~~~~~~~~~~~~~--~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l 184 (451)
T 2jlq_A 108 VPNYNLIVMDEAHFT-DPCSVAARGYISTRV--EMGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWI 184 (451)
T ss_dssp CCCCSEEEEETTTCC-SHHHHHHHHHHHHHH--HTTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCHHH
T ss_pred ccCCCEEEEeCCccC-CcchHHHHHHHHHhh--cCCCceEEEEccCCCccchhhhcCCCceEecCccCCchhhHHHHHHH
Confidence 578999999999988 5 5555555554432 234578888887543110 000 0 000
Q ss_pred -ccCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhHH-HHHHhhhcCCCccccccccccccc
Q psy13788 62 -HTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGILD-VLQIFGRAGRPQYNTSDLGRTASN 138 (1034)
Q Consensus 62 -~~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 138 (1034)
...++++||+++ +. .+ ..+.+.+.+.. ..+ ..|....+ +.+.|.. ......++|
T Consensus 185 ~~~~~~~lVF~~s---~~--~a----~~l~~~L~~~g------~~~~~lh~~~~~~~~~~f~~--------g~~~vLVaT 241 (451)
T 2jlq_A 185 TDYQGKTVWFVPS---IK--AG----NDIANCLRKSG------KRVIQLSRKTFDTEYPKTKL--------TDWDFVVTT 241 (451)
T ss_dssp HHCCSCEEEECSS---HH--HH----HHHHHHHHTTT------CCEEEECTTTHHHHGGGGGS--------SCCSEEEEC
T ss_pred HhCCCCEEEEcCC---HH--HH----HHHHHHHHHcC------CeEEECCHHHHHHHHHhhcc--------CCceEEEEC
Confidence 023468888877 11 11 22222232210 112 33554442 2233322 244555566
Q ss_pred hhhhccCcccceEEEe-cCc---eeec--CCCCe----eeecChhhHHHHhhccCCCCccccceEEEECCc
Q psy13788 139 YYIKHNDIELFTEHMT-KGT---EMYN--AKHGC----YVHIGILDVLQIFGRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 139 ~~~~~~gvn~pa~vii-~~~---~~~~--~~~~~----~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~ 199 (1034)
..++. |||+|...|| .|. ..|| +...- ..+.+..+|.||+|||||.|.+ .|.+++++..
T Consensus 242 ~v~~~-GiDip~~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~-~g~~~~~~~~ 310 (451)
T 2jlq_A 242 DISEM-GANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ-EDDQYVFSGD 310 (451)
T ss_dssp GGGGS-SCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC-CCEEEEECSC
T ss_pred CHHHh-CcCCCCCEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC-CccEEEEeCC
Confidence 55553 8999984444 221 1122 11110 1678899999999999999974 5777888754
No 122
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.44 E-value=1.6e-07 Score=102.20 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=63.9
Q ss_pred HHHHHHhhCCCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCC
Q psy13788 917 IYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAE 996 (1034)
Q Consensus 917 ~~~~l~~~~~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~ 996 (1034)
+.+.+.... ++++||||++++.++.++..|... +..+..+||+|+
T Consensus 19 L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~----------------------------------g~~~~~lhg~l~ 63 (300)
T 3i32_A 19 LSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRL----------------------------------GHPAQALHGDMS 63 (300)
T ss_dssp HHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTT----------------------------------TCCEEEECSCCC
T ss_pred HHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhC----------------------------------CCCEEEEeCCCC
Confidence 444444443 679999999999999888776432 234789999999
Q ss_pred HHHHHHhcccchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 997 AAQSSALQMPKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 997 ~~~R~~ie~~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
+.+|+.+++ . |++|+++|||||+++++|+ |+.
T Consensus 64 ~~~r~~~~~--~--f~~g~~~vLVaT~va~~Gi-di~ 95 (300)
T 3i32_A 64 QGERERVMG--A--FRQGEVRVLVATDVAARGL-DIP 95 (300)
T ss_dssp THHHHHHHH--H--HHHTSCCEEEECSTTTCST-TCC
T ss_pred HHHHHHHHH--H--hhcCCceEEEEechhhcCc-ccc
Confidence 999999987 7 9999999999999999999 985
No 123
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.43 E-value=8e-07 Score=102.59 Aligned_cols=165 Identities=12% Similarity=0.067 Sum_probs=87.0
Q ss_pred cccccEEEEeeeecccCCCCchHHHHHHhhhhc--cccceeecccchhhhh--hH------H---------------Hhh
Q psy13788 5 TELVKLLIIDEVHLLHGDRGPVIEALVARTLRQ--IGQEVFKGVKSLNRIQ--SL------V---------------YDT 59 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d~RG~~le~li~~~~~~--~~~~~~~~~~~~~~~~--~~------~---------------~~~ 59 (1034)
.+++++|||||+|.++ +-.......+... ...++++++|++..-. .+ . +..
T Consensus 91 ~~~l~~vViDEaH~~~----~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 166 (431)
T 2v6i_A 91 VPNYNLYIMDEAHFLD----PASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPSNSPIIDEETRIPDKAWNSGYEW 166 (431)
T ss_dssp CCCCSEEEEESTTCCS----HHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCCSSCCEEEECCCCSSCCSSCCHH
T ss_pred ccCCCEEEEeCCccCC----ccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCCCCceeeccccCCHHHHHHHHHH
Confidence 5789999999999973 1112222221111 2357788887743210 00 0 000
Q ss_pred ccccCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhH-HHHHHhhhcCCCcccccccccccc
Q psy13788 60 AYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGIL-DVLQIFGRAGRPQYNTSDLGRTAS 137 (1034)
Q Consensus 60 ~~~~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 137 (1034)
.....++++||+++. ..+..++..+.+. +. .+ .+|.+.. ++.+.|..+ .+...++
T Consensus 167 l~~~~~~~lVF~~~~-----~~~~~l~~~L~~~---~~-------~v~~lhg~~r~~~~~~f~~g--------~~~vLVa 223 (431)
T 2v6i_A 167 ITEFDGRTVWFVHSI-----KQGAEIGTCLQKA---GK-------KVLYLNRKTFESEYPKCKSE--------KWDFVIT 223 (431)
T ss_dssp HHSCSSCEEEECSSH-----HHHHHHHHHHHHT---TC-------CEEEESTTTHHHHTTHHHHS--------CCSEEEE
T ss_pred HHcCCCCEEEEeCCH-----HHHHHHHHHHHHc---CC-------eEEEeCCccHHHHHHhhcCC--------CCeEEEE
Confidence 001244688988871 1111222222221 11 23 4465543 233444333 3344455
Q ss_pred chhhhccCcccce-EEEecCceee---cCCCC----eeeecChhhHHHHhhccCCCCccccceEEEECCc
Q psy13788 138 NYYIKHNDIELFT-EHMTKGTEMY---NAKHG----CYVHIGILDVLQIFGRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 138 ~~~~~~~gvn~pa-~vii~~~~~~---~~~~~----~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~ 199 (1034)
|..++. |||+|. .||..|+.+. | ..+ .-.+.+..+|.||+|||||.|- ..|.++++...
T Consensus 224 T~v~e~-GiDip~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~-~~~~~~~~~~~ 290 (431)
T 2v6i_A 224 TDISEM-GANFKADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPE-KLGDIYAYSGN 290 (431)
T ss_dssp CGGGGT-SCCCCCSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCCEEEECSC
T ss_pred CchHHc-CcccCCcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCC-CCCeEEEEcCC
Confidence 555553 899996 6776665442 2 000 0156789999999999999875 35667777643
No 124
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.42 E-value=1.8e-07 Score=109.06 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=42.9
Q ss_pred cccccccchhhhccCcccce-EEEecCcee-----ecCCCCe----eeecChhhHHHHhhccCCCCccccceEEEECCcc
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEM-----YNAKHGC----YVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE 200 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~-----~~~~~~~----~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~ 200 (1034)
.+...++|..++. |||+|. .||-.|+.+ |++...- -.+.++.+|.||+|||||.|- ..|.++++...+
T Consensus 236 ~~~iLVaT~v~~~-GiDip~~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~-~~G~~~~~~~~~ 313 (459)
T 2z83_A 236 DWDFVITTDISEM-GANFGASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN-QVGDEYHYGGAT 313 (459)
T ss_dssp CCSEEEESSCC----CCCSCSEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT-CCCEEEEECSCC
T ss_pred CceEEEECChHHh-CeecCCCEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCC-CCCeEEEEEccc
Confidence 4455556655553 899998 555544322 2222110 166889999999999999885 368888887653
No 125
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.40 E-value=1.2e-07 Score=113.02 Aligned_cols=165 Identities=12% Similarity=-0.018 Sum_probs=87.0
Q ss_pred cccccEEEEeeeecccCCCCchHHHHHHhhhhccccceeecccchhhh--hhH---HH--hh---------------ccc
Q psy13788 5 TELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRI--QSL---VY--DT---------------AYH 62 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d~RG~~le~li~~~~~~~~~~~~~~~~~~~~~--~~~---~~--~~---------------~~~ 62 (1034)
.+++++|||||+|++..+-...++.++.. ++...+..++.+|++.+- ... .. .. ...
T Consensus 316 l~~l~~lVlDEAH~l~~~~~~~l~~Il~~-l~~~~~~llil~SAT~~~~i~~~~p~i~~v~~~~~~~i~~~~~~~~l~~~ 394 (666)
T 3o8b_A 316 GGAYDIIICDECHSTDSTTILGIGTVLDQ-AETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAI 394 (666)
T ss_dssp TTSCSEEEETTTTCCSHHHHHHHHHHHHH-TTTTTCSEEEEEESSCTTCCCCCCTTEEEEECBSCSSEEETTEEECGGGS
T ss_pred cCcccEEEEccchhcCccHHHHHHHHHHh-hhhcCCceEEEECCCCCcccccCCcceEEEeecccchhHHHHhhhhhhhc
Confidence 35799999999999854333334444444 222233335555552211 000 00 00 001
Q ss_pred cCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhHHHHHHhhhcCCCccccccccccccchhh
Q psy13788 63 TNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGILDVLQIFGRAGRPQYNTSDLGRTASNYYI 141 (1034)
Q Consensus 63 ~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 141 (1034)
..++++||+++ + ..+ ..+.+.+.+. ...+ .+|+++... + +.++ .-...++|-.+
T Consensus 395 ~~~~vLVFv~T---r--~~a----e~la~~L~~~------g~~v~~lHG~l~q~-e-r~~~--------~~~VLVATdVa 449 (666)
T 3o8b_A 395 RGGRHLIFCHS---K--KKC----DELAAKLSGL------GINAVAYYRGLDVS-V-IPTI--------GDVVVVATDAL 449 (666)
T ss_dssp SSSEEEEECSC---H--HHH----HHHHHHHHTT------TCCEEEECTTSCGG-G-SCSS--------SCEEEEECTTH
T ss_pred cCCcEEEEeCC---H--HHH----HHHHHHHHhC------CCcEEEecCCCCHH-H-HHhC--------CCcEEEECChH
Confidence 34568999987 2 122 2222333221 1123 446665432 1 2222 12444555555
Q ss_pred hccCcccce-EEEecCcee-------ecCCCCe---eeecChhhHHHHhhccCCCCccccceEEEECCcc
Q psy13788 142 KHNDIELFT-EHMTKGTEM-------YNAKHGC---YVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE 200 (1034)
Q Consensus 142 ~~~gvn~pa-~vii~~~~~-------~~~~~~~---~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~ 200 (1034)
+. |||+|. .||..|..+ |||..|- ..+.+..+|.||+||||| | ..|. +.+...+
T Consensus 450 er-GIDIdV~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G~-i~lvt~~ 514 (666)
T 3o8b_A 450 MT-GYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRGI-YRFVTPG 514 (666)
T ss_dssp HH-HCCCCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCEE-EEESCCC
T ss_pred Hc-cCCCCCcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCCE-EEEEecc
Confidence 53 799887 566556433 5565431 157889999999999999 4 4688 6666654
No 126
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.40 E-value=5e-07 Score=110.74 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=45.5
Q ss_pred eecchhH-----HHHHHhhhc-CCCccccccccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHh
Q psy13788 107 YVHIGIL-----DVLQIFGRA-GRPQYNTSDLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIF 179 (1034)
Q Consensus 107 ~~h~~~~-----~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~ 179 (1034)
.+|.++. .+.+.|..+ ....++|+.++. |||+|. ++|| .||+. ..+...+.||+
T Consensus 618 ~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~----------GIDiP~v~~VI----i~d~~-----r~~l~~l~Qr~ 678 (780)
T 1gm5_A 618 LMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV----------GIDVPRANVMV----IENPE-----RFGLAQLHQLR 678 (780)
T ss_dssp CCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS----------CSCCTTCCEEE----BCSCS-----SSCTTHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc----------cccCCCCCEEE----EeCCC-----CCCHHHHHHHh
Confidence 4566654 344555432 233335544444 899994 4443 24432 23458899999
Q ss_pred hccCCCCccccceEEEECCc
Q psy13788 180 GRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 180 GRAGR~~~d~~G~~~i~~~~ 199 (1034)
|||||.|. .|.+++++.+
T Consensus 679 GRaGR~g~--~g~~ill~~~ 696 (780)
T 1gm5_A 679 GRVGRGGQ--EAYCFLVVGD 696 (780)
T ss_dssp HTSCCSST--TCEEECCCCS
T ss_pred cccCcCCC--CCEEEEEECC
Confidence 99999874 6999999874
No 127
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=97.76 E-value=3.6e-08 Score=98.40 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=59.8
Q ss_pred CCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcc
Q psy13788 926 PEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQM 1005 (1034)
Q Consensus 926 ~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~ 1005 (1034)
.++++||||++++.|+.++..|... +.++..+||+|++.+|..+++
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----------------------------------~~~~~~~~g~~~~~~r~~~~~ 74 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----------------------------------GINNCYLEGEMVQGKRNEAIK 74 (170)
Confidence 4568999999999999888776542 234789999999999998887
Q ss_pred cchhHhhcCCceEEEechhhhhccCCCC
Q psy13788 1006 PKLAALSSKENQNVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1006 ~~l~~f~~g~i~VLVaT~~l~~Gv~Dfs 1033 (1034)
. |++|+++|||||+++++|+ |+.
T Consensus 75 --~--f~~g~~~vLvaT~~~~~Gi-d~~ 97 (170)
T 2yjt_D 75 --R--LTEGRVNVLVATDVAARGI-DIP 97 (170)
Confidence 7 9999999999999999999 984
No 128
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.37 E-value=9e-07 Score=107.13 Aligned_cols=65 Identities=12% Similarity=0.024 Sum_probs=43.1
Q ss_pred cccccccchhhhccCcccce-EEEecCce-----eecCCCC-e---eeecChhhHHHHhhccCCCCccccceEEEEC
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTE-----MYNAKHG-C---YVHIGILDVLQIFGRAGRPQYNTSGHATIIT 197 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~-----~~~~~~~-~---~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~ 197 (1034)
.+...++|..++. |||+|. .||..|+. +||++.+ + -.+.++.+|.||+|||||.+ ...|.++++.
T Consensus 456 ~~~VLVaTdv~e~-GIDipv~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~-g~~G~ai~l~ 530 (673)
T 2wv9_A 456 DWDFVITTDISEM-GANFGASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNP-SQIGDEYHYG 530 (673)
T ss_dssp CCSEEEECGGGGT-TCCCCCSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCS-SCCCEEEEEC
T ss_pred CceEEEECchhhc-ceeeCCcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCC-CCCCEEEEEE
Confidence 3455555555553 899996 56655542 2454311 0 15678899999999999974 3579999994
No 129
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.36 E-value=1.8e-06 Score=101.19 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=38.2
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCccc
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEK 201 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~ 201 (1034)
...++|..+. .|+|+|+ .+|| .|| .+.++..|.||+|||||.|- |.++.+...+.
T Consensus 421 ~vLv~T~~~~-~Gldl~~~~~Vi----~~d------~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t 476 (494)
T 1wp9_A 421 NVLVATSVGE-EGLDVPEVDLVV----FYE------PVPSAIRSIQRRGRTGRHMP---GRVIILMAKGT 476 (494)
T ss_dssp SEEEECGGGG-GGGGSTTCCEEE----ESS------CCHHHHHHHHHHTTSCSCCC---SEEEEEEETTS
T ss_pred eEEEECCccc-cCCCchhCCEEE----EeC------CCCCHHHHHHHHhhccCCCC---ceEEEEEecCC
Confidence 3445555555 3899995 4444 244 23456899999999999986 88888776653
No 130
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.28 E-value=2.9e-06 Score=102.06 Aligned_cols=145 Identities=12% Similarity=0.164 Sum_probs=83.7
Q ss_pred ChhHHHHHHHHhcCCCcEEEEcCCCChhh--HHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEE
Q psy13788 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKT--IAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777 (1034)
Q Consensus 700 ~~~Q~~ai~~l~~~~~~vll~apTGsGKT--~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 777 (1034)
++.|.+|++.++ +++.+++.+|+|+||| +.++++.+..+....+.++++++||..++.+..+.+...... +++...
T Consensus 151 ~~~Q~~Ai~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~-l~l~~~ 228 (608)
T 1w36_D 151 INWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ-LPLTDE 228 (608)
T ss_dssp CCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHH-SSCCSC
T ss_pred CHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhc-CCCCHH
Confidence 679999999988 7889999999999999 556666666543334679999999999999877766543332 333211
Q ss_pred EEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeE
Q psy13788 778 ELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVR 857 (1034)
Q Consensus 778 ~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~ 857 (1034)
.. ......... -..++-.+|+... +.. .......++++|||||+++. ...+..++ ...+...|
T Consensus 229 ~~-~~~~~~~~T--ih~ll~~~~~~~~-~~~---~~~~~l~~d~lIIDEAsml~---~~~~~~Ll-------~~l~~~~~ 291 (608)
T 1w36_D 229 QK-KRIPEDAST--LHRLLGAQPGSQR-LRH---HAGNPLHLDVLVVDEASMID---LPMMSRLI-------DALPDHAR 291 (608)
T ss_dssp CC-CSCSCCCBT--TTSCC---------------CTTSCCSCSEEEECSGGGCB---HHHHHHHH-------HTCCTTCE
T ss_pred HH-hccchhhhh--hHhhhccCCCchH-HHh---ccCCCCCCCEEEEechhhCC---HHHHHHHH-------HhCCCCCE
Confidence 00 000000000 0112222333211 111 11122378999999999664 23444444 23456778
Q ss_pred EEEEcc
Q psy13788 858 LVGLST 863 (1034)
Q Consensus 858 iv~lSA 863 (1034)
+|++.=
T Consensus 292 liLvGD 297 (608)
T 1w36_D 292 VIFLGD 297 (608)
T ss_dssp EEEEEC
T ss_pred EEEEcc
Confidence 888754
No 131
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.22 E-value=1.6e-06 Score=107.06 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=35.1
Q ss_pred ccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCc
Q psy13788 132 LGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 132 l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~ 199 (1034)
+...++|..++. |||+|. ++|| .||+ +-++..|.|++|||||.| +..++++..
T Consensus 465 ~~VLVaT~~~~~-GIDip~v~~VI----~~d~------p~s~~~~~Qr~GRArr~g----~~~~l~~~~ 518 (699)
T 4gl2_A 465 INLLIATTVAEE-GLDIKECNIVI----RYGL------VTNEIAMVQARGRARADE----STYVLVAHS 518 (699)
T ss_dssp -CCSEEECSCCT-TSCCCSCCCCE----EESC------CCCHHHHHHHHTTSCSSS----CEEEEEEES
T ss_pred CcEEEEcccccc-CCccccCCEEE----EeCC------CCCHHHHHHHcCCCCCCC----ceEEEEEeC
Confidence 344455555553 899997 5554 4762 346799999999999876 555555544
No 132
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.21 E-value=5.9e-06 Score=82.56 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=41.0
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
...++|..++ .|+|+|. .+||. ||.......+.+..+|.||+|||||.| ..|.+++++..++...+..
T Consensus 86 ~vLvaT~~~~-~Gid~~~~~~Vi~----~d~p~~~~~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~ 154 (175)
T 2rb4_A 86 KVLITTNVCA-RGIDVKQVTIVVN----FDLPVKQGEEPDYETYLHRIGRTGRFG--KKGLAFNMIEVDELPSLMK 154 (175)
T ss_dssp SEEEECCSCC-TTTCCTTEEEEEE----SSCCC--CCSCCHHHHHHHHCBC------CCEEEEEEECGGGHHHHHH
T ss_pred eEEEEecchh-cCCCcccCCEEEE----eCCCCCccccCCHHHHHHHhcccccCC--CCceEEEEEccchHHHHHH
Confidence 3444444444 3899996 44442 432110113478899999999999988 5799999998876555544
No 133
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.15 E-value=3.5e-06 Score=108.43 Aligned_cols=55 Identities=24% Similarity=0.428 Sum_probs=37.1
Q ss_pred cccccchhhhccCcccc-e-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcc
Q psy13788 133 GRTASNYYIKHNDIELF-T-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE 200 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~p-a-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~ 200 (1034)
...++|..++. |||+| + .|||.+.. .+++.+|.||.||+||.| ..|.+++++..+
T Consensus 866 ~VLVaT~v~e~-GiDip~v~~VIi~~~~----------~~~l~~l~Qr~GRvgR~g--~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 866 NVLVCTTIIET-GIDIPTANTIIIERAD----------HFGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 922 (1151)
T ss_dssp CEEEESSTTGG-GSCCTTEEEEEETTTT----------SSCHHHHHHHHTTCCBTT--BCEEEEEEECCG
T ss_pred cEEEECCccee-eecccCCcEEEEeCCC----------CCCHHHHHHHHhccCcCC--CceEEEEEECCc
Confidence 33444444442 89999 4 45543221 235578999999999987 479999998763
No 134
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.08 E-value=4.7e-06 Score=97.69 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=34.0
Q ss_pred ccccchhhhccCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCcc-ccceEEEECCc
Q psy13788 134 RTASNYYIKHNDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYN-TSGHATIITPH 199 (1034)
Q Consensus 134 ~~~~~~~~~~~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d-~~G~~~i~~~~ 199 (1034)
..++|..++ -|+|+|. .||+ ||+ +-++.+|.|++|||||.|-. .....+.++..
T Consensus 397 vLv~T~~~~-~Gldlp~~~~Vi~-----~~~------~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 397 AIVSSQVLD-EGIDVPDANVGVI-----MSG------SGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp BCBCSSCCC-SSSCSCCBSEEEE-----ECC------SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred EEEEcCchh-cCcccccCcEEEE-----ECC------CCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 344444444 3899996 4554 552 24568999999999999953 33444444444
No 135
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.06 E-value=3.7e-06 Score=100.69 Aligned_cols=56 Identities=14% Similarity=0.312 Sum_probs=25.1
Q ss_pred ccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccH
Q psy13788 132 LGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKL 202 (1034)
Q Consensus 132 l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~ 202 (1034)
+...++|..++. |+|+|+ .+|| .||+ +-++..|.||+|| ||. ..|.+++++..+..
T Consensus 454 ~~vLvaT~~~~~-GiDip~v~~VI----~~d~------p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 454 NRLLIATSVADE-GIDIVQCNLVV----LYEY------SGNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 510 (556)
T ss_dssp CCEEEEEC------------CEEE----EETC------CSCHHHHHHC------------CCEEEEESCHHH
T ss_pred eEEEEEcCchhc-CCCchhCCEEE----EeCC------CCCHHHHHHhcCC-CCC---CCceEEEEEeCcch
Confidence 344455544443 899997 4444 3663 4567999999999 996 67999998877543
No 136
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.05 E-value=2.9e-05 Score=76.45 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=43.3
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
...++|..++ .|+|+|. .+||. || .+.++.+|.||+|||||.|- .|.+++++...+...+..
T Consensus 87 ~vlv~T~~~~-~Gld~~~~~~Vi~----~~------~p~~~~~~~qr~GR~~R~g~--~g~~~~~~~~~~~~~~~~ 149 (163)
T 2hjv_A 87 RYLVATDVAA-RGIDIENISLVIN----YD------LPLEKESYVHRTGRTGRAGN--KGKAISFVTAFEKRFLAD 149 (163)
T ss_dssp SEEEECGGGT-TTCCCSCCSEEEE----SS------CCSSHHHHHHHTTTSSCTTC--CEEEEEEECGGGHHHHHH
T ss_pred eEEEECChhh-cCCchhcCCEEEE----eC------CCCCHHHHHHhccccCcCCC--CceEEEEecHHHHHHHHH
Confidence 4445555555 3899996 44432 44 34577999999999999985 688998888766555444
No 137
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.04 E-value=1e-05 Score=80.55 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=42.2
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
...++|..++ .|+|+|. .+||. || .+.++.+|.||+|||||.|- .|.+++++.+.+...+..
T Consensus 83 ~vLvaT~~~~-~Gldi~~~~~Vi~----~d------~p~~~~~~~qr~GR~~R~g~--~g~~~~~~~~~~~~~~~~ 145 (172)
T 1t5i_A 83 RILVATNLFG-RGMDIERVNIAFN----YD------MPEDSDTYLHRVARAGRFGT--KGLAITFVSDENDAKILN 145 (172)
T ss_dssp SEEEESSCCS-TTCCGGGCSEEEE----SS------CCSSHHHHHHHHHHHTGGGC--CCEEEEEECSHHHHHHHH
T ss_pred cEEEECCchh-cCcchhhCCEEEE----EC------CCCCHHHHHHHhcccccCCC--CcEEEEEEcChhHHHHHH
Confidence 3444444444 3899996 44442 54 34567999999999999984 799999988754334443
No 138
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.03 E-value=4.9e-06 Score=99.61 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=38.7
Q ss_pred ccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccH
Q psy13788 132 LGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKL 202 (1034)
Q Consensus 132 l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~ 202 (1034)
+...++|..++. |+|+|+ .+|| .||+ +-++.+|.||+|| ||. ..|.+++++..+..
T Consensus 453 ~~vLvaT~~~~~-GlDlp~v~~VI----~~d~------p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 453 NNILIATSVADE-GIDIAECNLVI----LYEY------VGNVIKMIQTRGR-GRA---RDSKCFLLTSSADV 509 (555)
T ss_dssp CSEEEECCCTTC-CEETTSCSEEE----EESC------CSSCCCEECSSCC-CTT---TSCEEEEEESCHHH
T ss_pred eeEEEEcchhhc-CCccccCCEEE----EeCC------CCCHHHHHHhcCc-CcC---CCceEEEEEcCCCH
Confidence 344455544553 899996 4444 2663 3466899999999 886 68999999887543
No 139
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.02 E-value=1.7e-05 Score=78.41 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=39.6
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
...++|..++ .|+|+|. .+||. || .+.++.+|.||+|||||.| ..|.+++++..++...+..
T Consensus 82 ~vlv~T~~~~-~G~d~~~~~~Vi~----~~------~p~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~ 144 (165)
T 1fuk_A 82 RILISTDLLA-RGIDVQQVSLVIN----YD------LPANKENYIHRIGRGGRFG--RKGVAINFVTNEDVGAMRE 144 (165)
T ss_dssp SEEEEEGGGT-TTCCCCSCSEEEE----SS------CCSSGGGGGGSSCSCC-------CEEEEEEETTTHHHHHH
T ss_pred EEEEEcChhh-cCCCcccCCEEEE----eC------CCCCHHHHHHHhcccccCC--CCceEEEEEcchHHHHHHH
Confidence 4455555555 3899996 44432 44 3456799999999999998 5799999988766554443
No 140
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.94 E-value=1.6e-05 Score=98.08 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=26.7
Q ss_pred ccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccH
Q psy13788 132 LGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKL 202 (1034)
Q Consensus 132 l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~ 202 (1034)
....++|..++. |||+|. .+|| .||+ +-++..|.||+|| ||. ..|.+++++..+..
T Consensus 462 ~~vLVaT~v~~~-GiDip~v~~VI----~~d~------p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 462 HNILIATSVADE-GIDIAQCNLVI----LYEY------VGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGV 518 (696)
T ss_dssp CSCSEEEESSCC-C---CCCSEEE----EESC------C--CCCC-------------CCCEEEEEESCHHH
T ss_pred ccEEEEechhhc-CCcCccCCEEE----EeCC------CCCHHHHHHhhcc-CcC---CCceEEEEecCCCH
Confidence 344555555553 899997 4554 3663 3456799999999 995 67999999887543
No 141
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.91 E-value=8.8e-06 Score=101.72 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=28.1
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCccc
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEK 201 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~ 201 (1034)
.+...++|..++. |||+|+ .+|| .||+ +-++..|.||+|| ||. ..|.+++++..+.
T Consensus 694 ~~~vLVaT~~~~~-GIDlp~v~~VI----~yd~------p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 694 DNRLLIATSVADE-GIDIVQCNLVV----LYEY------SGNVTKMIQVRGR-GRA---AGSKCILVTSKTE 750 (797)
T ss_dssp CCSEEEEECC--------CCCSEEE----EESC------CSCHHHHHTC-----------CCCEEEEECCHH
T ss_pred CceEEEEcCchhc-CCCchhCCEEE----EeCC------CCCHHHHHHhcCC-CCC---CCceEEEEEeCCc
Confidence 3344555555553 899996 4444 3663 4467999999999 997 6899999987753
No 142
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.90 E-value=2.6e-05 Score=78.59 Aligned_cols=109 Identities=16% Similarity=0.220 Sum_probs=57.8
Q ss_pred cCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhH-----HHHHHhhhcCCCccccccccccc
Q psy13788 63 TNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGIL-----DVLQIFGRAGRPQYNTSDLGRTA 136 (1034)
Q Consensus 63 ~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~-----~~~~~~~~~~~~~~~~~~l~~~~ 136 (1034)
++++++||+++. +... .++. .+... ...+ .+|.++. .+.+.|..+ .....+
T Consensus 45 ~~~k~lVF~~~~--~~~~---~l~~----~L~~~------g~~~~~lhg~~~~~~r~~~~~~f~~g--------~~~vLv 101 (185)
T 2jgn_A 45 KDSLTLVFVETK--KGAD---SLED----FLYHE------GYACTSIHGDRSQRDREEALHQFRSG--------KSPILV 101 (185)
T ss_dssp CCSCEEEEESCH--HHHH---HHHH----HHHHT------TCCEEEEC--------CHHHHHHHHT--------SSSEEE
T ss_pred CCCeEEEEECCH--HHHH---HHHH----HHHHc------CCceEEEeCCCCHHHHHHHHHHHHcC--------CCeEEE
Confidence 577899999871 1111 2222 22211 1123 4566665 334455433 223444
Q ss_pred cchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHHH
Q psy13788 137 SNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207 (1034)
Q Consensus 137 ~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~~ 207 (1034)
+|..++ .|+|+|. .+||. || .+.++.+|.||+|||||.|- .|.+++++...+...+..
T Consensus 102 aT~~~~-~Gldi~~~~~VI~----~d------~p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~~~~~~~ 160 (185)
T 2jgn_A 102 ATAVAA-RGLDISNVKHVIN----FD------LPSDIEEYVHRIGRTGRVGN--LGLATSFFNERNINITKD 160 (185)
T ss_dssp EEC-------CCCSBSEEEE----SS------CCSSHHHHHHHHTTBCCTTS--CEEEEEEECGGGGGGHHH
T ss_pred EcChhh-cCCCcccCCEEEE----eC------CCCCHHHHHHHccccCCCCC--CcEEEEEEchhhHHHHHH
Confidence 444444 3899996 44442 55 34567999999999999984 699999988765444433
No 143
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.90 E-value=4.4e-05 Score=92.08 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=22.0
Q ss_pred ccccEEEEeeeecccCCCCchHHHHHHhhhhccccceeecccch
Q psy13788 6 ELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSL 49 (1034)
Q Consensus 6 ~~v~~vViDEvH~l~d~RG~~le~li~~~~~~~~~~~~~~~~~~ 49 (1034)
+.+++|||||.|.+.+..+..+..++..+ ...+++|++++
T Consensus 301 ~~~~lvIiDEaH~~~~~~~~~~~~il~~~----~~~~~l~lTAT 340 (590)
T 3h1t_A 301 DFFDLIIIDECHRGSARDNSNWREILEYF----EPAFQIGMTAT 340 (590)
T ss_dssp TSCSEEEESCCC---------CHHHHHHS----TTSEEEEEESS
T ss_pred CccCEEEEECCccccccchHHHHHHHHhC----CcceEEEeccc
Confidence 45899999999999874456677776553 23457777664
No 144
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.88 E-value=5.8e-05 Score=77.83 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=41.8
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHH
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~ 206 (1034)
...++|..++ -|+|+|. .+|| .|| .+.++.+|.||+|||||.|- .|.++++....+...+.
T Consensus 83 ~vlvaT~~~~-~Gidi~~v~~Vi----~~~------~p~~~~~~~qr~GR~gR~g~--~g~~~~l~~~~~~~~~~ 144 (212)
T 3eaq_A 83 RVLVATDVAA-RGLDIPQVDLVV----HYR------LPDRAEAYQHRSGRTGRAGR--GGRVVLLYGPRERRDVE 144 (212)
T ss_dssp CEEEECTTTT-CSSSCCCBSEEE----ESS------CCSSHHHHHHHHTTBCCCC----BEEEEEECGGGHHHHH
T ss_pred eEEEecChhh-cCCCCccCcEEE----ECC------CCcCHHHHHHHhcccCCCCC--CCeEEEEEchhHHHHHH
Confidence 4445554444 3899996 4444 244 34567999999999999984 59999999886544443
No 145
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.87 E-value=2.7e-05 Score=94.50 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=40.7
Q ss_pred cccchhhhccCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCccc
Q psy13788 135 TASNYYIKHNDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEK 201 (1034)
Q Consensus 135 ~~~~~~~~~~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~ 201 (1034)
.++|..++ .|+++|. .||+.+...+ + -+-+...|.||+|||||.+ .|.++++++...
T Consensus 493 LvaT~~l~-~GlDip~v~lVI~~d~d~~-----G-~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 551 (664)
T 1c4o_A 493 LVGINLLR-EGLDIPEVSLVAILDADKE-----G-FLRSERSLIQTIGRAARNA---RGEVWLYADRVS 551 (664)
T ss_dssp EEESCCCC-TTCCCTTEEEEEETTTTSC-----S-GGGSHHHHHHHHGGGTTST---TCEEEEECSSCC
T ss_pred EEccChhh-cCccCCCCCEEEEeCCccc-----C-CCCCHHHHHHHHCccCcCC---CCEEEEEEcCCC
Confidence 33333344 3899996 6787665544 2 2456789999999999984 799999998753
No 146
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.87 E-value=1.6e-05 Score=101.66 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=24.8
Q ss_pred cccccEEEEeeeecccCCCCchHHHHHHhh
Q psy13788 5 TELVKLLIIDEVHLLHGDRGPVIEALVART 34 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d~RG~~le~li~~~ 34 (1034)
++++++|||||+|.+.+ .|+.++.++.++
T Consensus 173 L~~l~~lViDEah~~l~-~~~~~~~i~~~l 201 (1054)
T 1gku_B 173 LGHFDFIFVDDVDAILK-ASKNVDKLLHLL 201 (1054)
T ss_dssp SCCCSEEEESCHHHHHT-STHHHHHHHHHT
T ss_pred hccCCEEEEeChhhhhh-ccccHHHHHHHh
Confidence 45789999999999887 789999988774
No 147
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.82 E-value=4.9e-05 Score=92.38 Aligned_cols=67 Identities=21% Similarity=0.268 Sum_probs=55.3
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKV 766 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~ 766 (1034)
.+++-|.+|+..++.+..-.+|.+|.|+|||.+..-.+.+.+.+ +.++|+++||..-+++..+++..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~--~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ--GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEcCchHHHHHHHHHHHh
Confidence 48999999999887555568999999999998876666666654 68999999999999998887753
No 148
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.72 E-value=6.9e-05 Score=88.64 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=29.3
Q ss_pred cccccccEEEEeeeecccCCCCchHHHHHHhhhhccccceeecccchh
Q psy13788 3 ALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLN 50 (1034)
Q Consensus 3 ~~~~~v~~vViDEvH~l~d~RG~~le~li~~~~~~~~~~~~~~~~~~~ 50 (1034)
.+.+++++|||||+|.+.+ ..++.++..+ ....+++|+|++.
T Consensus 221 ~~~~~~~liIiDE~H~~~~---~~~~~il~~~---~~~~~~l~lSATp 262 (510)
T 2oca_A 221 EWFSQFGMMMNDECHLATG---KSISSIISGL---NNCMFKFGLSGSL 262 (510)
T ss_dssp GGGGGEEEEEEETGGGCCH---HHHHHHGGGC---TTCCEEEEEESCG
T ss_pred hhhhcCCEEEEECCcCCCc---ccHHHHHHhc---ccCcEEEEEEeCC
Confidence 3567899999999999976 3355555442 2345788888754
No 149
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00013 Score=90.17 Aligned_cols=69 Identities=20% Similarity=0.359 Sum_probs=54.6
Q ss_pred cCCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHH
Q psy13788 696 FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKV 766 (1034)
Q Consensus 696 ~~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~ 766 (1034)
+..+++.|.+|+..++ .+...+|.||+|+|||.+..-.+...+.. ++.++++++||...+++..+++.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp SCCCCHHHHHHHHHHT-TCSEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHh
Confidence 3458999999999987 56678999999999998765444433332 478999999999999998887764
No 150
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.65 E-value=9.2e-05 Score=89.78 Aligned_cols=57 Identities=11% Similarity=0.131 Sum_probs=40.7
Q ss_pred cccchhhhccCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCccc
Q psy13788 135 TASNYYIKHNDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEK 201 (1034)
Q Consensus 135 ~~~~~~~~~~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~ 201 (1034)
.++|..++ .|+++|. .||+.+...+. -+-+...|.||+|||||. ..|.++++++...
T Consensus 499 LVaT~~l~-~GlDip~v~lVi~~d~d~~G------~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 499 LVGINLLR-EGLDIPEVSLVAILDADKEG------FLRSERSLIQTIGRAARN---AEGRVIMYADKIT 557 (661)
T ss_dssp EEESCCCS-TTCCCTTEEEEEETTTTCCT------TTTSHHHHHHHHHTTTTS---TTCEEEEECSSCC
T ss_pred EEecchhh-CCcccCCCCEEEEeCccccc------CCCCHHHHHHHhCcccCC---CCCEEEEEEeCCC
Confidence 33333344 3899996 68876665542 234678999999999996 5799999998743
No 151
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.65 E-value=0.00012 Score=88.30 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=53.5
Q ss_pred CCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHH
Q psy13788 697 SHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWK 765 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~ 765 (1034)
..+++.|.+|+..++ .+...+|.+|+|+|||.+..-.+ ..+...++.++++++||...+++..+++.
T Consensus 179 ~~ln~~Q~~av~~~l-~~~~~li~GppGTGKT~~~~~~i-~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIV-YHLARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp CCCCHHHHHHHHHHH-TCSEEEEECCTTSCHHHHHHHHH-HHHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh-cCCCeEEECCCCCCHHHHHHHHH-HHHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 458999999999887 56678999999999998755444 33343357899999999999998777665
No 152
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.64 E-value=0.0002 Score=83.20 Aligned_cols=65 Identities=20% Similarity=0.322 Sum_probs=47.7
Q ss_pred cCCCChhHHHHHHHHhcC----CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHH
Q psy13788 696 FSHFNPIQTQIFHCLYHT----DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERV 761 (1034)
Q Consensus 696 ~~~~~~~Q~~ai~~l~~~----~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~ 761 (1034)
|..+++-|.+|+..++.. ...+++.||.|+|||.+.. .+...+.......+++++||...+....
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTGETGIILAAPTHAAKKILS 91 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTTCCCEEEEESSHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcCCceEEEecCcHHHHHHHH
Confidence 556999999999876532 3489999999999997653 3444444433458999999988776543
No 153
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.64 E-value=0.0002 Score=91.63 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=25.6
Q ss_pred ChhhHHHHhhccCC--CCccccceEEEECCcc
Q psy13788 171 GILDVLQIFGRAGR--PQYNTSGHATIITPHE 200 (1034)
Q Consensus 171 ~~~~~~Qm~GRAGR--~~~d~~G~~~i~~~~~ 200 (1034)
++..|.||+||+|| +|=.+.|.+++++++.
T Consensus 461 d~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~ 492 (1104)
T 4ddu_A 461 DVYTYIQASGRSSRILNGVLVKGVSVIFEEDE 492 (1104)
T ss_dssp CHHHHHHHHHTTCCEETTEECCEEEEEECCCH
T ss_pred ChhhhhcccCchhcccCCCcccceEEEEEecH
Confidence 56789999999999 5666889999999764
No 154
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.61 E-value=0.00012 Score=92.74 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=28.1
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCccc
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEK 201 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~ 201 (1034)
.+..+++|..++. |||+|+ .+|| .||+ +-++..|.|++|| ||. ..|.+++++....
T Consensus 694 ~~~VLVaT~~~~e-GIDlp~v~~VI----~yD~------p~s~~~~iQr~GR-GR~---~~g~vi~Li~~~t 750 (936)
T 4a2w_A 694 DNRLLIATSVADE-GIDIVQCNLVV----LYEY------SGNVTKMIQVRGR-GRA---AGSKCILVTSKTE 750 (936)
T ss_dssp CCSEEEEECC-------CCCCSEEE----EESC------CSCSHHHHCC-----------CCCEEEEESCHH
T ss_pred CeeEEEEeCchhc-CCcchhCCEEE----EeCC------CCCHHHHHHhcCC-CCC---CCCEEEEEEeCCC
Confidence 3344555554553 899996 4444 2663 3467899999999 987 6788888877643
No 155
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=97.60 E-value=0.00018 Score=78.12 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=59.6
Q ss_pred cCCceEEeccCCcchhHHHHHHHHHHHHHHhhccccceeccccc-eecchhH-----HHHHHhhhcCCCccccccccccc
Q psy13788 63 TNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC-YVHIGIL-----DVLQIFGRAGRPQYNTSDLGRTA 136 (1034)
Q Consensus 63 ~~~~~~v~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~h~~~~-----~~~~~~~~~~~~~~~~~~l~~~~ 136 (1034)
+++.++||+++ +. .+ ..+.+.+.+. ...+ .+|+++. .+.+.|..+ .+...+
T Consensus 27 ~~~~~LVF~~t---~~--~~----~~l~~~L~~~------g~~~~~lhg~l~~~~r~~~~~~f~~g--------~~~vLV 83 (300)
T 3i32_A 27 SPDRAMVFTRT---KA--ET----EEIAQGLLRL------GHPAQALHGDMSQGERERVMGAFRQG--------EVRVLV 83 (300)
T ss_dssp CCSSEEEECSS---HH--HH----HHHHHHHHTT------TCCEEEECSCCCTHHHHHHHHHHHHT--------SCCEEE
T ss_pred CCCCEEEEECC---HH--HH----HHHHHHHHhC------CCCEEEEeCCCCHHHHHHHHHHhhcC--------CceEEE
Confidence 46789999987 21 11 2222223221 1123 4576665 233444333 233444
Q ss_pred cchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHHHH
Q psy13788 137 SNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206 (1034)
Q Consensus 137 ~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~y~ 206 (1034)
+|..++ -|+|+|. .+|| .|| .+-++..|.||+|||||.|- .|.++.++...+...+.
T Consensus 84 aT~va~-~Gidi~~v~~VI----~~d------~p~s~~~y~Qr~GRagR~g~--~G~~i~l~~~~e~~~~~ 141 (300)
T 3i32_A 84 ATDVAA-RGLDIPQVDLVV----HYR------MPDRAEAYQHRSGRTGRAGR--GGRVVLLYGPRERRDVE 141 (300)
T ss_dssp ECSTTT-CSTTCCCCSEEE----ESS------CCSSTTHHHHHHTCCC-------CEEEEEECSSTHHHHH
T ss_pred Eechhh-cCccccceeEEE----EcC------CCCCHHHHHHHccCcCcCCC--CceEEEEeChHHHHHHH
Confidence 444444 3899996 4444 243 23467899999999999985 49999999886544443
No 156
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.51 E-value=0.00022 Score=87.95 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=53.0
Q ss_pred CCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHH
Q psy13788 697 SHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWK 765 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~ 765 (1034)
..+++.|.+|+..++ .+...+|.+|+|+|||.+..-.+ ..+...++.++++++||...+++..+++.
T Consensus 355 ~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~ti~~~i-~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIV-YHLARQGNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp CCCCHHHHHHHHHHH-TSSEEEEECCTTSCHHHHHHHHH-HHHHTTCSSCEEEEESSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhc-cCCeEEEEcCCCCCHHHHHHHHH-HHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Confidence 348999999999887 56678999999999998754433 34444357899999999999888777664
No 157
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.49 E-value=0.00036 Score=70.47 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=36.8
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcc
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE 200 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~ 200 (1034)
...++|..++ -|+|+|. .+||. || .+.++.+|.||+|||||.|- .|.++++....
T Consensus 106 ~vLvaT~~~~-~Gldi~~v~~VI~----~d------~p~~~~~~~qr~GR~gR~g~--~g~~i~l~~~~ 161 (191)
T 2p6n_A 106 DVLVATDVAS-KGLDFPAIQHVIN----YD------MPEEIENYVHRIGRTGCSGN--TGIATTFINKA 161 (191)
T ss_dssp SEEEECHHHH-TTCCCCCCSEEEE----SS------CCSSHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred EEEEEcCchh-cCCCcccCCEEEE----eC------CCCCHHHHHHHhCccccCCC--CcEEEEEEcCc
Confidence 4455555555 3899996 44432 55 34567999999999999986 68888887654
No 158
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.48 E-value=0.0005 Score=81.71 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHH
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERV 761 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~ 761 (1034)
+++.|.+++..++ +++.+++.+|.|+|||.+... ++..+.. .+.++++++||...+....
T Consensus 190 L~~~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i~~-l~~~l~~-~g~~Vl~~ApT~~Aa~~L~ 249 (574)
T 3e1s_A 190 LSEEQASVLDQLA-GHRLVVLTGGPGTGKSTTTKA-VADLAES-LGLEVGLCAPTGKAARRLG 249 (574)
T ss_dssp CCHHHHHHHHHHT-TCSEEEEECCTTSCHHHHHHH-HHHHHHH-TTCCEEEEESSHHHHHHHH
T ss_pred CCHHHHHHHHHHH-hCCEEEEEcCCCCCHHHHHHH-HHHHHHh-cCCeEEEecCcHHHHHHhH
Confidence 8899999999987 678899999999999976433 3333333 4789999999998876543
No 159
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.40 E-value=0.00047 Score=87.44 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=34.9
Q ss_pred cccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCc
Q psy13788 133 GRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 133 ~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~ 199 (1034)
...++|..++ -|+|+|. ..|| .||+ +.++..|.|++||+||.|-......+.+...
T Consensus 558 ~vLvaT~v~~-~GlDl~~~~~VI----~~d~------p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~ 614 (968)
T 3dmq_A 558 QVLLCSEIGS-EGRNFQFASHMV----MFDL------PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLE 614 (968)
T ss_dssp EEEECSCCTT-CSSCCTTCCEEE----CSSC------CSSHHHHHHHHHTTSCSSSCSCCEEEEEEET
T ss_pred cEEEecchhh-cCCCcccCcEEE----EecC------CCCHHHHHHHhhccccCCCCceEEEEEecCC
Confidence 4444443444 3899995 4443 2552 3567999999999999997543334333333
No 160
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=97.39 E-value=0.00019 Score=76.75 Aligned_cols=70 Identities=9% Similarity=0.078 Sum_probs=57.4
Q ss_pred CCCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhcc
Q psy13788 926 PEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQM 1005 (1034)
Q Consensus 926 ~~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~ 1005 (1034)
.+.++||||+++..+..++..|.... +..+..+||+++.++|+.+.+
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~---------------------------------g~~~~~l~G~~~~~~R~~~i~ 157 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL---------------------------------NTEVPFLYGELSKKERDDIIS 157 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH---------------------------------CSCCCEECTTSCHHHHHHHHH
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc---------------------------------CCcEEEEECCCCHHHHHHHHH
Confidence 46799999999998887777665431 223678999999999988877
Q ss_pred cchhHhhcC-Cce-EEEechhhhhccCCCC
Q psy13788 1006 PKLAALSSK-ENQ-NVINRSTSANGNFDFN 1033 (1034)
Q Consensus 1006 ~~l~~f~~g-~i~-VLVaT~~l~~Gv~Dfs 1033 (1034)
. |++| .++ +|++|+++++|+ |+.
T Consensus 158 --~--F~~~~~~~v~L~st~~~g~Gl-nl~ 182 (271)
T 1z5z_A 158 --K--FQNNPSVKFIVLSVKAGGFGI-NLT 182 (271)
T ss_dssp --H--HHHCTTCCEEEEECCTTCCCC-CCT
T ss_pred --H--hcCCCCCCEEEEehhhhcCCc-Ccc
Confidence 6 9998 777 789999999999 974
No 161
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.45 E-value=3e-05 Score=76.99 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=42.0
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHHH
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNH 204 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~~ 204 (1034)
.....++|..++ .|+|+|. .+||. || .+.++.+|.||+|||||.|- .|.+++++...+...
T Consensus 80 ~~~vLvaT~~~~-~Gid~~~~~~Vi~----~~------~p~~~~~~~qr~GR~~R~g~--~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 80 RVNVLVATDVAA-RGIDIPDVSHVFN----FD------MPRSGDTYLHRIGRTARAGR--KGTAISLVEAHDHLL 141 (170)
Confidence 334555555555 3899996 44442 44 34567899999999999875 788988887754333
No 162
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.20 E-value=0.0017 Score=76.40 Aligned_cols=56 Identities=14% Similarity=-0.002 Sum_probs=34.0
Q ss_pred Ccccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcccHH-HHHHHhcC
Q psy13788 145 DIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLN-HYLSLLTN 211 (1034)
Q Consensus 145 gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~~~~-~y~~~~~~ 211 (1034)
|+|+|+ .||+ || .+.++..+.|++|||+|.|-.....++-+...+..+ +...++..
T Consensus 407 Glnl~~~~~vi~-----~d------~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~ 465 (500)
T 1z63_A 407 GINLTSANRVIH-----FD------RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAF 465 (500)
T ss_dssp CCCCTTCSEEEE-----SS------CCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTT
T ss_pred CCchhhCCEEEE-----eC------CCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHH
Confidence 899996 5554 55 234568999999999999987666655554443333 33344433
No 163
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.80 E-value=0.016 Score=64.62 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=76.8
Q ss_pred CCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcC--C-
Q psy13788 698 HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK--K- 774 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~--~- 774 (1034)
.++|+|...+..+. ..+-+++..+-+.|||.+....++..+...++..+++++|++.-+...++.+...+.. .+ +
T Consensus 163 ~L~p~Qk~il~~l~-~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~-~P~ll~ 240 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIEL-LPDFLQ 240 (385)
T ss_dssp CCCHHHHHHHHHHH-HSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHH-SCTTTS
T ss_pred CCCHHHHHHHHhhc-cCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHh-ChHhhh
Confidence 38999999998774 4466899999999999887666665444556789999999999998888777655543 21 1
Q ss_pred -eEEEEcCCCCccccccCCCcEEEEC--HhhHHHHHhccccccccCcccEEEEecccccCC
Q psy13788 775 -KVVELTGDVTPDIQAISSASVIVTT--PEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832 (1034)
Q Consensus 775 -~v~~~~g~~~~~~~~~~~~~IiV~T--pe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~ 832 (1034)
.+.... . .......++.|.+.+ |+.+ + + .+.+++|+||+|.+.+
T Consensus 241 ~~~~~~~-~--~~I~f~nGs~i~~lsa~~~sl----r---G----~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 241 PGIVEWN-K--GSIELDNGSSIGAYASSPDAV----R---G----NSFAMIYIEDCAFIPN 287 (385)
T ss_dssp CCEEEEC-S--SEEEETTSCEEEEEECSHHHH----H---T----SCCSEEEEESGGGSTT
T ss_pred hhhccCC-c--cEEEeCCCCEEEEEECCCCCc----c---C----CCCCEEEechhhhcCC
Confidence 111111 1 011111244444333 3322 1 1 2357899999999874
No 164
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.51 E-value=0.0055 Score=74.54 Aligned_cols=69 Identities=16% Similarity=0.067 Sum_probs=55.8
Q ss_pred CCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHHHh
Q psy13788 697 SHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--PEAKVVYIAPLKALVKERVADWKVKF 768 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~--~~~~~lvi~Pt~~L~~q~~~~~~~~~ 768 (1034)
..+++-|.+|+. +.++.++|.|+.|||||.+..--+...+... +..+++++++|+..+.+..+++.+.+
T Consensus 8 ~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 359999999997 3567899999999999998777666666542 34789999999999999888777644
No 165
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.42 E-value=0.025 Score=67.61 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=56.9
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEA 770 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~ 770 (1034)
++|+|...+..+. ..+.+++..|-|+|||.+....++..+...++.++++++|++..+.+.+..++..+..
T Consensus 164 l~p~Q~~i~~~l~-~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 164 LRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCHHHHHHHHHHH-HCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhhc-cccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 8999999998773 5677999999999999887665555555556779999999999999988777655543
No 166
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=95.99 E-value=0.0047 Score=50.39 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=49.1
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhcCC
Q psy13788 488 PLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWEIP 552 (1034)
Q Consensus 488 ~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~~P 552 (1034)
+|.+| ||+++..+.+|..+|+ |+++|+.+++++|..+.. ++..+.+|+..++.+|
T Consensus 8 ~l~~L----------~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~~~ 64 (70)
T 1wcn_A 8 DLLNL----------EGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNIC 64 (70)
T ss_dssp HHHSS----------TTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHc----------CCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHHcc
Confidence 57788 9999999999999999 999999999999999876 7788899988887644
No 167
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.69 E-value=0.029 Score=55.57 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHh--------cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHH
Q psy13788 700 NPIQTQIFHCLY--------HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKE 759 (1034)
Q Consensus 700 ~~~Q~~ai~~l~--------~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q 759 (1034)
++.|.+++..+. ..++.+++.+|+|+|||..+...+ ..+....+..+++ ++..++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~-~~~~~~~g~~~~~-~~~~~~~~~ 81 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATL-KAIYEKKGIRGYF-FDTKDLIFR 81 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHH-HHHHHHSCCCCCE-EEHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHH-HHHHHHcCCeEEE-EEHHHHHHH
Confidence 457888876553 256789999999999998654433 2222112434444 344455443
No 168
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.27 E-value=0.026 Score=68.74 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=61.3
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHh--CCCCeEEEEcCcHHHHHHHHHHHHHHhhhh--cCC
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ--CPEAKVVYIAPLKALVKERVADWKVKFEAR--LKK 774 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~--~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~--~~~ 774 (1034)
++|-|.+|+.. .+.+++|.|+.|||||.+..--+...+.. .+..++++++.|+..+.+..+++.+.++.. .++
T Consensus 3 L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 3 LNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 88999999874 46789999999999999877666666654 245789999999999999888887766542 235
Q ss_pred eEEEEcC
Q psy13788 775 KVVELTG 781 (1034)
Q Consensus 775 ~v~~~~g 781 (1034)
.+..+++
T Consensus 80 ~v~Tfhs 86 (673)
T 1uaa_A 80 MISTFHT 86 (673)
T ss_dssp EEEEHHH
T ss_pred EEEeHHH
Confidence 5555443
No 169
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.12 E-value=0.039 Score=67.71 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=62.4
Q ss_pred CCCChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHHHhhhh-cC
Q psy13788 697 SHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--PEAKVVYIAPLKALVKERVADWKVKFEAR-LK 773 (1034)
Q Consensus 697 ~~~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~--~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~-~~ 773 (1034)
..++|-|.+|+.. .+.+++|.|+.|||||.+..--+...+... +..++++++.|+..+.+..+++.+.++.. .+
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~ 86 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAED 86 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTT
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccC
Confidence 3489999999874 457899999999999998776666666542 45789999999999999888888766542 24
Q ss_pred CeEEEEcC
Q psy13788 774 KKVVELTG 781 (1034)
Q Consensus 774 ~~v~~~~g 781 (1034)
+.+..+++
T Consensus 87 ~~v~Tfhs 94 (724)
T 1pjr_A 87 VWISTFHS 94 (724)
T ss_dssp SEEEEHHH
T ss_pred cEEeeHHH
Confidence 55555443
No 170
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.67 E-value=0.068 Score=53.20 Aligned_cols=39 Identities=21% Similarity=0.066 Sum_probs=28.7
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLK 754 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~ 754 (1034)
+.-.++.+|.|+|||+.++--+.+...+ +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~--g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG--KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT--TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeecc
Confidence 5567899999999999765555544433 67899998884
No 171
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.22 E-value=0.054 Score=61.12 Aligned_cols=85 Identities=16% Similarity=0.101 Sum_probs=51.6
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcE
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASV 795 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~I 795 (1034)
-.++.|+.|+|||... .+.+ . ..+.+|++||++++.++.+++ .. .+. . .....
T Consensus 163 v~~I~G~aGsGKTt~I----~~~~-~--~~~~lVlTpT~~aa~~l~~kl----~~-~~~--------~-------~~~~~ 215 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI----LSRV-N--FEEDLILVPGRQAAEMIRRRA----NA-SGI--------I-------VATKD 215 (446)
T ss_dssp EEEEEECTTSCHHHHH----HHHC-C--TTTCEEEESCHHHHHHHHHHH----TT-TSC--------C-------CCCTT
T ss_pred EEEEEcCCCCCHHHHH----HHHh-c--cCCeEEEeCCHHHHHHHHHHh----hh-cCc--------c-------ccccc
Confidence 4678999999999843 2222 1 257799999999987755544 22 110 0 01123
Q ss_pred EEECHhhHHHHHhccccccccCcccEEEEecccccC
Q psy13788 796 IVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 796 iV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~ 831 (1034)
-|.|.+.+. ++. ........+++|||||-++.
T Consensus 216 ~V~T~dsfL--~~~--~~~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 216 NVRTVDSFL--MNY--GKGARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp TEEEHHHHH--HTT--TSSCCCCCSEEEEETGGGSC
T ss_pred eEEEeHHhh--cCC--CCCCCCcCCEEEEeCcccCC
Confidence 367777652 221 11112247899999998765
No 172
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.02 E-value=0.083 Score=68.72 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=57.2
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC----CCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC----PEAKVVYIAPLKALVKERVADWKVKFEA 770 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l~il~~l~~~----~~~~~lvi~Pt~~L~~q~~~~~~~~~~~ 770 (1034)
+++-|.+++.. .+++++|.|+.|||||.+..--+...+... +..+++++++|++.+.++.+++...+++
T Consensus 11 ~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~ 83 (1232)
T 3u4q_A 11 WTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEK 83 (1232)
T ss_dssp CCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHH
Confidence 89999999874 577999999999999998777777776652 3468999999999999998888776654
No 173
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.85 E-value=0.2 Score=51.32 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=30.2
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLK 754 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~ 754 (1034)
.|.-+++.+|+|+|||+..+-.+.+...+ +.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEecc
Confidence 45568889999999999776666555443 67888888765
No 174
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.79 E-value=0.29 Score=52.99 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=28.6
Q ss_pred CcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCCCHH
Q psy13788 817 QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAK 869 (1034)
Q Consensus 817 ~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~~~~ 869 (1034)
...-++++||+|.+.+ ...+..++. +......+.-+|+.++|+..+.
T Consensus 131 ~~~~ii~lDE~d~l~~--q~~L~~l~~----~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 131 KRKTLILIQNPENLLS--EKILQYFEK----WISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp SCEEEEEEECCSSSCC--THHHHHHHH----HHHCSSCCEEEEEECCSSCCCH
T ss_pred CCceEEEEecHHHhhc--chHHHHHHh----cccccCCcEEEEEEecCcccch
Confidence 3456899999999982 122222222 1123345677889999986643
No 175
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=93.77 E-value=0.14 Score=54.49 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=18.6
Q ss_pred Ccccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCc
Q psy13788 145 DIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 145 gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~ 199 (1034)
|+|+|+ .||+ || .+.++..+.|.+|||+|.|-...-.++-+...
T Consensus 178 Glnl~~a~~VI~-----~d------~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 178 GINLTSANRVIH-----FD------RWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp CCCCTTCSEEEE-----CS------CCSCTTTC--------------CCEEEEEEET
T ss_pred CcCcccCCEEEE-----EC------CCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 899996 5554 55 34567899999999999998655544444433
No 176
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=93.76 E-value=0.33 Score=57.70 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=36.4
Q ss_pred eecChhhHHHHhhccCCCCccccceEEEECCcc----------cHHHHHHHhc--CCcceecccccchH
Q psy13788 168 VHIGILDVLQIFGRAGRPQYNTSGHATIITPHE----------KLNHYLSLLT--NQIPIESNFVANLA 224 (1034)
Q Consensus 168 ~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~----------~~~~y~~~~~--~~~~i~s~l~~~~~ 224 (1034)
.+-+...|.|..||+||.|- .|.++.+++.+ ....+...++ +.+||++.+..+..
T Consensus 557 ~Pes~r~y~qriGRTGRqG~--~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~i 623 (822)
T 3jux_A 557 RHESRRIDNQLRGRAGRQGD--PGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLI 623 (822)
T ss_dssp CCSSHHHHHHHHTTSSCSSC--CCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCSSSCBCCHHHHHHH
T ss_pred CCCCHHHHHHhhCccccCCC--CeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCCCceeccHHHHHHH
Confidence 34456899999999999885 78877776542 2223333332 45789888866543
No 177
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.73 E-value=0.23 Score=50.34 Aligned_cols=18 Identities=39% Similarity=0.678 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChhhHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~ 732 (1034)
.++++.+|+|+|||..+.
T Consensus 39 ~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 369999999999998553
No 178
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.72 E-value=0.12 Score=51.68 Aligned_cols=40 Identities=18% Similarity=0.037 Sum_probs=29.8
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLK 754 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~ 754 (1034)
.+.-.++.+|.|+|||+..+-.+.+...+ +.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~--g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIA--KQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEecc
Confidence 34557889999999998776665555433 78999999984
No 179
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.70 E-value=0.49 Score=51.86 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=27.2
Q ss_pred CChhHHHHHHHHh---cCCC---cEEEEcCCCChhhHHHHHHHHH
Q psy13788 699 FNPIQTQIFHCLY---HTDN---NVLLGAPTGSGKTIAAEITCFR 737 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~---~~~~---~vll~apTGsGKT~~~~l~il~ 737 (1034)
+.|+|.+++..+. .+++ .+++.+|.|+|||..+...+-.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH
Confidence 4578888876553 2333 3899999999999876654433
No 180
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.48 E-value=0.14 Score=48.99 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCChhhHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~ 732 (1034)
.+..+++.+|+|+|||..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57789999999999998543
No 181
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.37 E-value=0.55 Score=53.59 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt 753 (1034)
..++++.+|+|+|||..+....-......++..++++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3579999999999998765544333334446677776543
No 182
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.98 E-value=0.81 Score=46.92 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=17.3
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
.+..+++.+|+|+|||..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 467899999999999986543
No 183
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.89 E-value=0.27 Score=54.94 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCChhhHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~ 734 (1034)
...+++.+|+|+|||..+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l 65 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYI 65 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 456999999999999876443
No 184
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=92.86 E-value=0.13 Score=40.84 Aligned_cols=46 Identities=9% Similarity=0.233 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCchhHHHHHHHhh
Q psy13788 503 PILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVGDKVKQCAW 549 (1034)
Q Consensus 503 p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~~~g~~i~~~~~ 549 (1034)
||||+.+.++|.++ + |++++.+++.+||..++.....++.|+++++
T Consensus 10 pGIG~kr~~~LL~~-Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 10 PGVNAKNCRSLMHH-VKNIAELAALSQDELTSILGNAANAKQLYDFIH 56 (63)
T ss_dssp TTCCHHHHHHHHHH-CSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHh
Confidence 99999999999864 6 9999999999999999764333999999886
No 185
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.77 E-value=0.43 Score=49.44 Aligned_cols=39 Identities=31% Similarity=0.381 Sum_probs=28.2
Q ss_pred cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC
Q psy13788 712 HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P 752 (1034)
..|.-+++.+|+|+|||..+.-.+...... +.+++|+.-
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~ 59 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVAL 59 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEES
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEc
Confidence 367789999999999998765544444433 567888764
No 186
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.58 E-value=0.37 Score=48.61 Aligned_cols=41 Identities=12% Similarity=-0.016 Sum_probs=30.0
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKA 755 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~ 755 (1034)
.|.-.++.+|-|+|||+.++--+.+...+ +.+++++.|.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeccC
Confidence 34446678888999999877766666544 789999999874
No 187
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.39 E-value=0.29 Score=53.25 Aligned_cols=18 Identities=44% Similarity=0.671 Sum_probs=15.4
Q ss_pred cEEEEcCCCChhhHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l 733 (1034)
++++.+|+|+|||..+..
T Consensus 48 ~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 699999999999986543
No 188
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.33 E-value=0.6 Score=50.82 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=23.9
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P 752 (1034)
..+++.+|+|+|||..+....- .+... +..++++..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~-~~~~~-~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN-EAKKR-GYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH-HHHHT-TCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHH-HHHHC-CCEEEEEEH
Confidence 5799999999999986554332 23222 456666653
No 189
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=92.04 E-value=0.17 Score=60.06 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=72.2
Q ss_pred CCChhHHHHHHHHhcC-CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeE
Q psy13788 698 HFNPIQTQIFHCLYHT-DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKV 776 (1034)
Q Consensus 698 ~~~~~Q~~ai~~l~~~-~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v 776 (1034)
.+|.-|.+|+..+... ....++.|+-|.|||.+.-+.+-.. ...++|.+|+.+=+.. +.+..+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-----~~~~~vtAP~~~a~~~----l~~~~~~------ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-----AGRAIVTAPAKASTDV----LAQFAGE------ 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-----SSCEEEECSSCCSCHH----HHHHHGG------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-----HhCcEEECCCHHHHHH----HHHHhhC------
Confidence 4889999999988742 2357899999999997665555443 2357999999876543 2211111
Q ss_pred EEEcCCCCccccccCCCcEEEECHhhHHHHHhccccccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCe
Q psy13788 777 VELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNV 856 (1034)
Q Consensus 777 ~~~~g~~~~~~~~~~~~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~ 856 (1034)
.|-+..|+.+. . .....+++|||||=.+.- +.+..++. ..
T Consensus 240 -----------------~i~~~~Pd~~~---~------~~~~~dlliVDEAAaIp~---pll~~ll~-----------~~ 279 (671)
T 2zpa_A 240 -----------------KFRFIAPDALL---A------SDEQADWLVVDEAAAIPA---PLLHQLVS-----------RF 279 (671)
T ss_dssp -----------------GCCBCCHHHHH---H------SCCCCSEEEEETGGGSCH---HHHHHHHT-----------TS
T ss_pred -----------------CeEEeCchhhh---h------CcccCCEEEEEchhcCCH---HHHHHHHh-----------hC
Confidence 02233565432 1 134589999999998863 44444332 22
Q ss_pred EEEEEccCCCC
Q psy13788 857 RLVGLSTALAN 867 (1034)
Q Consensus 857 ~iv~lSATl~~ 867 (1034)
+.++||.|...
T Consensus 280 ~~v~~~tTv~G 290 (671)
T 2zpa_A 280 PRTLLTTTVQG 290 (671)
T ss_dssp SEEEEEEEBSS
T ss_pred CeEEEEecCCc
Confidence 34677777654
No 190
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.01 E-value=1.1 Score=45.62 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=25.2
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
.|.-+++.+|+|+|||+.+...+...... +.+++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEE
Confidence 56778999999999997654444333332 45677765
No 191
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.98 E-value=0.9 Score=49.55 Aligned_cols=143 Identities=13% Similarity=0.163 Sum_probs=74.7
Q ss_pred cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE-EcCCCCcccc--
Q psy13788 712 HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE-LTGDVTPDIQ-- 788 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~-~~g~~~~~~~-- 788 (1034)
..|.-+++.|++|+|||..++-.+..... .+..++|+..--. ..|...++..... ++.... ..|..+....
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEms-~~ql~~Rlls~~~---~v~~~~l~~g~Ls~~e~~~ 117 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEMS-AEQLALRALSDLT---SINMHDLESGRLDDDQWEN 117 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSSC-HHHHHHHHHHHHH---CCCHHHHHHTCCCHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCC-HHHHHHHHHHHhh---CCCHHHHhcCCCCHHHHHH
Confidence 35667999999999999876555554444 3678888864211 2233333322111 111100 1122211100
Q ss_pred ------ccCCCcEEEE-----CHhhHHHHHhccccccccCcccEEEEecccccCCC-----ChhHHHHHHHHHHHhhhcc
Q psy13788 789 ------AISSASVIVT-----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED-----RGPVLEVIVSRVNFISSYT 852 (1034)
Q Consensus 789 ------~~~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~-----~~~~~~~il~rl~~l~~~~ 852 (1034)
.+...++.|- |++.+...+++.... ...+++||||-.+.+... +...+..+...|+.++..+
T Consensus 118 l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~--~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel 195 (338)
T 4a1f_A 118 LAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQ--HKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLAREL 195 (338)
T ss_dssp HHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHH--CTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHh--cCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHc
Confidence 0112344442 344454444432211 126899999999998641 2234666777777665544
Q ss_pred CCCeEEEEEccC
Q psy13788 853 KRNVRLVGLSTA 864 (1034)
Q Consensus 853 ~~~~~iv~lSAT 864 (1034)
++.++++|-.
T Consensus 196 --~vpVi~lsQl 205 (338)
T 4a1f_A 196 --EIPIIALVQL 205 (338)
T ss_dssp --TSCEEEEEEC
T ss_pred --CCeEEEEEec
Confidence 4667777653
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.93 E-value=0.3 Score=54.84 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
..++++.+|+|+|||.++..
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999986543
No 193
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.85 E-value=0.53 Score=54.06 Aligned_cols=141 Identities=17% Similarity=0.203 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE-EcCCCCcccc---
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE-LTGDVTPDIQ--- 788 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~-~~g~~~~~~~--- 788 (1034)
.|.-+++.|++|+|||..+.-.+...... .+.+++|+..-.. ..|...++.... .++.... ..|.......
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s-~~~l~~r~~~~~---~~~~~~~l~~g~l~~~~~~~~ 276 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMS-AQQLVMRMLCAE---GNINAQNLRTGKLTPEDWGKL 276 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSC-HHHHHHHHHHHH---HTCCHHHHHTSCCCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCC-HHHHHHHHHHHH---cCCCHHHHhcCCCCHHHHHHH
Confidence 67789999999999998766555544433 2557888763221 123333321110 1111100 1122211110
Q ss_pred -----ccCCCcEEEE-----CHhhHHHHHhccccccccCcccEEEEecccccCCC------ChhHHHHHHHHHHHhhhcc
Q psy13788 789 -----AISSASVIVT-----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED------RGPVLEVIVSRVNFISSYT 852 (1034)
Q Consensus 789 -----~~~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~------~~~~~~~il~rl~~l~~~~ 852 (1034)
.....++.+- |++.+....+.... -..+++||+|+.+.+... ....+..+...++.+....
T Consensus 277 ~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~---~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~ 353 (454)
T 2r6a_A 277 TMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQ---ESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAREL 353 (454)
T ss_dssp HHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHT---TTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 0112345443 44444444432221 135899999999998641 3345566777776665433
Q ss_pred CCCeEEEEEcc
Q psy13788 853 KRNVRLVGLST 863 (1034)
Q Consensus 853 ~~~~~iv~lSA 863 (1034)
++.++++|-
T Consensus 354 --~i~vi~~sq 362 (454)
T 2r6a_A 354 --EVPVIALSQ 362 (454)
T ss_dssp --TCCEEEEEC
T ss_pred --CCeEEEEec
Confidence 456777764
No 194
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.81 E-value=0.71 Score=48.77 Aligned_cols=20 Identities=45% Similarity=0.416 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
..++++.+|+|+|||..+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 35799999999999986643
No 195
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=91.69 E-value=0.2 Score=42.26 Aligned_cols=46 Identities=9% Similarity=0.233 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCchhHHHHHHHhh
Q psy13788 503 PILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVGDKVKQCAW 549 (1034)
Q Consensus 503 p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~~~g~~i~~~~~ 549 (1034)
||||+.+.++|.++ + |++.|.+++.+||..++.....++.|+++++
T Consensus 24 pGIG~kr~~~LL~~-FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~l~ 70 (84)
T 1z00_B 24 PGVNAKNCRSLMHH-VKNIAELAALSQDELTSILGNAANAKQLYDFIH 70 (84)
T ss_dssp SSCCHHHHHHHHHH-SSCHHHHHHSCHHHHHHHHSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999875 6 9999999999999999775444999999885
No 196
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=91.62 E-value=0.059 Score=57.05 Aligned_cols=44 Identities=9% Similarity=0.044 Sum_probs=35.9
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR 51 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~ 51 (1034)
.+++++|||||+|.+.+ +.+..++.++.++ ....|++++|++.+
T Consensus 199 ~~~l~~lViDEah~l~~~~~~~~l~~i~~~~---~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 199 YKNLQCLVIDEADRILDVGFEEELKQIIKLL---PTRRQTMLFSATQT 243 (262)
T ss_dssp CTTCCEEEECSHHHHHHTTCHHHHHHHHHHS---CSSSEEEEECSSCC
T ss_pred cccCCEEEEcChHHHhhhhHHHHHHHHHHhC---CCCCeEEEEEecCC
Confidence 46799999999999999 8999999988774 23468999988533
No 197
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.54 E-value=0.57 Score=52.20 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=17.6
Q ss_pred CCCcEEEEcCCCChhhHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~ 734 (1034)
.+.++++.+|+|+|||..+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~ 64 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLV 64 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHH
Confidence 4567999999999999865443
No 198
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.50 E-value=1.5 Score=44.77 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.1
Q ss_pred cEEEEcCCCChhhHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l 733 (1034)
.+++.+|+|+|||..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999986543
No 199
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=91.22 E-value=0.12 Score=46.38 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhcC
Q psy13788 504 ILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWEI 551 (1034)
Q Consensus 504 ~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~~ 551 (1034)
|+++..+.+|..+|| |+++++.+++.+|..+-. ++..+.+|++.++.+
T Consensus 32 GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 32 GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 899999999999999 999999999999998876 788899999999876
No 200
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.18 E-value=0.69 Score=52.89 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE-EcCCCCcccc---
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE-LTGDVTPDIQ--- 788 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~-~~g~~~~~~~--- 788 (1034)
.|.-+++.|++|+|||..++-.+...... .+.+++|+..-.. ..|...++.... .++.... ..|.......
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~-~~~l~~R~~~~~---~~i~~~~l~~g~l~~~~~~~~ 273 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMP-AAQLTLRMMCSE---ARIDMNRVRLGQLTDRDFSRL 273 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSC-HHHHHHHHHHHH---TTCCTTTCCGGGCCHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCC-HHHHHHHHHHHH---cCCCHHHHhCCCCCHHHHHHH
Confidence 56779999999999998665555544432 2567888764211 123333332111 1121100 1122211110
Q ss_pred -----ccCCCcEEEE-----CHhhHHHHHhccccccccCcccEEEEecccccCCC--------ChhHHHHHHHHHHHhhh
Q psy13788 789 -----AISSASVIVT-----TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED--------RGPVLEVIVSRVNFISS 850 (1034)
Q Consensus 789 -----~~~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~~--------~~~~~~~il~rl~~l~~ 850 (1034)
.+...++.+- |++.+...+++.... ..+++||||..+.+... ....+..+...++.+..
T Consensus 274 ~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~---~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAk 350 (444)
T 2q6t_A 274 VDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQ---NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALAR 350 (444)
T ss_dssp HHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHH---SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0113345553 344444433332211 35899999999998642 12345566667766654
Q ss_pred ccCCCeEEEEEcc
Q psy13788 851 YTKRNVRLVGLST 863 (1034)
Q Consensus 851 ~~~~~~~iv~lSA 863 (1034)
.. ++.++++|-
T Consensus 351 e~--~v~vi~lsq 361 (444)
T 2q6t_A 351 EL--GIPIIALSQ 361 (444)
T ss_dssp HH--TSCEEEEEE
T ss_pred Hh--CCeEEEEec
Confidence 43 456777764
No 201
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.15 E-value=0.65 Score=51.70 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChhhHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~ 731 (1034)
.+.+++.+|+|+|||+.+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 467999999999999854
No 202
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=90.86 E-value=0.48 Score=47.05 Aligned_cols=39 Identities=18% Similarity=0.048 Sum_probs=28.8
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt 753 (1034)
.++=.++.+|.|||||.-.+-.+-+...+ +.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccc
Confidence 35568899999999997555555554443 6889999887
No 203
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.54 E-value=0.96 Score=48.66 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
+.++++.+|+|+|||.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34799999999999986644
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.45 E-value=1.1 Score=50.53 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=60.4
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCC
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISS 792 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 792 (1034)
..+++++|+|+|||+...--+... .. .+.+++++. +.+.-+.++...+.. ..++.+.. ....
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l-~~-~G~kVllv~~D~~r~~a~eqL~~~~~----~~gv~~~~--~~~~-------- 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFY-KK-RGYKVGLVAADVYRPAAYDQLLQLGN----QIGVQVYG--EPNN-------- 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHH-HH-TTCCEEEEEECCSCHHHHHHHHHHHH----TTTCCEEC--CTTC--------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HH-cCCeEEEEecCccchhHHHHHHHHHH----hcCCceee--cccc--------
Confidence 357888999999998655443332 23 366776655 444444443444432 23443321 1110
Q ss_pred CcEEEECHhhHH-HHHhccccccccCcccEEEEecccccC--CCChhHHHHHHHHHHHhhhccCCCeEEEEEccCCC
Q psy13788 793 ASVIVTTPEKWD-GVSRSWQNRNYVQSVALIIIDEIHLLG--EDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866 (1034)
Q Consensus 793 ~~IiV~Tpe~l~-~l~~~~~~~~~l~~l~~lViDEaH~l~--~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSATl~ 866 (1034)
..|..+. ..+. .......+++|+|++-.+. .+. ..+.. +..+.....+..-++.++|+..
T Consensus 162 -----~dp~~i~~~al~----~a~~~~~DvvIIDTaGr~~~~~d~-~lm~e----l~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 162 -----QNPIEIAKKGVD----IFVKNKMDIIIVDTAGRHGYGEET-KLLEE----MKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp -----SCHHHHHHHHHH----HTTTTTCSEEEEEECCCSSSCCTT-HHHHH----HHHHHHHHCCSEEEEEEEGGGG
T ss_pred -----CCHHHHHHHHHH----HHHhcCCCEEEEECCCCccccCCH-HHHHH----HHHHHHhhCCcceEEEEeCccc
Confidence 1233321 1121 1112467999999998765 321 11222 2222222334555667777754
No 205
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.10 E-value=0.41 Score=51.85 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=15.2
Q ss_pred cEEEEcCCCChhhHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l 733 (1034)
++++.+|+|+|||..+..
T Consensus 44 ~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp CEEEECSTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 599999999999986544
No 206
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.96 E-value=0.64 Score=50.59 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCChhhHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~ 734 (1034)
.+.+++.+|+|+|||..+...
T Consensus 51 ~~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 356999999999999865433
No 207
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.96 E-value=0.53 Score=51.73 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=18.9
Q ss_pred HHHHhcCCC--cEEEEcCCCChhhHHHHH
Q psy13788 707 FHCLYHTDN--NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 707 i~~l~~~~~--~vll~apTGsGKT~~~~l 733 (1034)
+......|+ ++++.+|+|+|||..+..
T Consensus 37 L~~~i~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 37 VRKFVDEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp HHHHHHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 333333554 389999999999986544
No 208
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=89.77 E-value=0.075 Score=54.77 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=35.9
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR 51 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~ 51 (1034)
.+++++|||||+|.+.+ +.+..++.++.++ ....|++++|++.+
T Consensus 165 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~---~~~~~~l~~SAT~~ 209 (228)
T 3iuy_A 165 LRSITYLVIDEADKMLDMEFEPQIRKILLDV---RPDRQTVMTSATWP 209 (228)
T ss_dssp CTTCCEEEECCHHHHHHTTCHHHHHHHHHHS---CSSCEEEEEESCCC
T ss_pred cccceEEEEECHHHHhccchHHHHHHHHHhC---CcCCeEEEEEeeCC
Confidence 57799999999999998 8999999888763 33568999988633
No 209
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.71 E-value=2.9 Score=48.65 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=16.6
Q ss_pred CcEEEEcCCCChhhHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~ 734 (1034)
+.+++.+|+|+|||.++...
T Consensus 78 ~~lLL~GppGtGKTtla~~l 97 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLV 97 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999865433
No 210
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.68 E-value=0.43 Score=50.84 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=16.7
Q ss_pred CCCcEEEEcCCCChhhHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~ 732 (1034)
.+..+++.+|+|+|||..+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 45679999999999998553
No 211
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.66 E-value=0.48 Score=47.74 Aligned_cols=41 Identities=20% Similarity=0.025 Sum_probs=28.9
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKA 755 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~ 755 (1034)
.|.-.++.+|-|+|||+..+-.+.+...+ +.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~--g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYA--KQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHc--CCceEEEEeccC
Confidence 45567888999999998665555444333 688999999764
No 212
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.62 E-value=1.4 Score=46.06 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
....+++.+|+|+|||..+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 345799999999999986543
No 213
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.60 E-value=0.42 Score=52.99 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=17.1
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
..+.+++.+|+|+|||..+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 356799999999999986543
No 214
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=89.47 E-value=1.1 Score=55.60 Aligned_cols=52 Identities=17% Similarity=0.092 Sum_probs=36.4
Q ss_pred cchhhhccCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCcc
Q psy13788 137 SNYYIKHNDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE 200 (1034)
Q Consensus 137 ~~~~~~~~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~~ 200 (1034)
++.... -|+|||+ +||+ ||+ +-++..+.|++|||+|.|-.....++-+...+
T Consensus 631 St~agg-~GlNL~~a~~VI~-----~D~------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 631 STRAGG-LGINLMTADTVVI-----FDS------DWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp EHHHHT-TTCCCTTCCEEEE-----SSC------CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred eccccc-CCCCccccceEEE-----ecC------CCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 343344 3899996 5665 552 34678999999999999987766666555443
No 215
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.37 E-value=0.71 Score=50.19 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=12.9
Q ss_pred CcccEEEEecccccC
Q psy13788 817 QSVALIIIDEIHLLG 831 (1034)
Q Consensus 817 ~~l~~lViDEaH~l~ 831 (1034)
...+++|+||+|.+.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 467899999999986
No 216
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=89.19 E-value=0.085 Score=55.37 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=36.3
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhh-hccccceeecccchhh
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTL-RQIGQEVFKGVKSLNR 51 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~-~~~~~~~~~~~~~~~~ 51 (1034)
.+++++|||||+|.+.+ +.+..++.++.++. +.....|++++|++.+
T Consensus 172 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 172 LEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp CTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred hhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 47789999999999988 89999999988632 1222578999988643
No 217
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=89.18 E-value=0.12 Score=52.13 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=34.5
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR 51 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~ 51 (1034)
.+++++|||||+|.+.+ +.+..++.++.++ ....++++++++.+
T Consensus 144 ~~~~~~lViDEah~~~~~~~~~~l~~i~~~~---~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 144 VDHVQMIVLDEADKLLSQDFVQIMEDIILTL---PKNRQILLYSATFP 188 (206)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHS---CTTCEEEEEESCCC
T ss_pred cccCCEEEEEChHHhHhhCcHHHHHHHHHhC---CccceEEEEEeeCC
Confidence 46899999999999888 8888888877663 23567899987643
No 218
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.17 E-value=1.1 Score=49.99 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=22.3
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
.+++.+|+|+|||..+... ...+....+..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l-~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKL-WELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHH-HHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHH-HHHHhhhcCeeEEEEe
Confidence 7999999999999865432 2333221134566664
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.86 E-value=0.84 Score=51.58 Aligned_cols=18 Identities=50% Similarity=0.750 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChhhHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~ 731 (1034)
.+.+++.+|+|+|||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 467999999999999954
No 220
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=88.53 E-value=0.086 Score=54.94 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=35.9
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR 51 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~ 51 (1034)
++++++|||||+|.+.+ +.+..++.++.++ ....|++++|++.+
T Consensus 174 ~~~~~~lViDEah~l~~~~~~~~~~~i~~~~---~~~~q~~~~SAT~~ 218 (242)
T 3fe2_A 174 LRRTTYLVLDEADRMLDMGFEPQIRKIVDQI---RPDRQTLMWSATWP 218 (242)
T ss_dssp CTTCCEEEETTHHHHHHTTCHHHHHHHHTTS---CSSCEEEEEESCCC
T ss_pred cccccEEEEeCHHHHhhhCcHHHHHHHHHhC---CccceEEEEEeecC
Confidence 57899999999999999 8999999888763 23568999988643
No 221
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.52 E-value=1.5 Score=48.59 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHh-CC-CCeEEEEc
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQ-CP-EAKVVYIA 751 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~-~~-~~~~lvi~ 751 (1034)
+..+++.+|+|+|||..+...+ ..+.. .. +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~-~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVL-SKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHH-HHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHH-HHHHHHhcCCceEEEEE
Confidence 5679999999999998654432 22222 11 34555554
No 222
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.49 E-value=1.2 Score=50.84 Aligned_cols=141 Identities=17% Similarity=0.136 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE-EcCC--CCccc--
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE-LTGD--VTPDI-- 787 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~-~~g~--~~~~~-- 787 (1034)
.|.-+++.|++|+|||..++-.+.....+ +.+++|+..--. ..|...++.... .++.... ..|. .....
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms-~~ql~~R~~~~~---~~i~~~~l~~g~~~l~~~~~~ 269 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG-KKENIKRLIVTA---GSINAQKIKAARRDFASEDWG 269 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC-TTHHHHHHHHHH---SCCCHHHHHHTGGGTCCSCHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC-HHHHHHHHHHHH---cCCCHHHHhcccCCCCHHHHH
Confidence 56779999999999998776666655554 678888873311 122233322111 1111110 0121 11110
Q ss_pred ------cccCCCcEEEE-----CHhhHHHHHhccccccccCccc--EEEEecccccCCC-----ChhHHHHHHHHHHHhh
Q psy13788 788 ------QAISSASVIVT-----TPEKWDGVSRSWQNRNYVQSVA--LIIIDEIHLLGED-----RGPVLEVIVSRVNFIS 849 (1034)
Q Consensus 788 ------~~~~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~--~lViDEaH~l~~~-----~~~~~~~il~rl~~l~ 849 (1034)
..+...++.|- |++.+...+++.... ..++ +||||-.+.+... ....+..+...++.+.
T Consensus 270 ~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~---~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lA 346 (444)
T 3bgw_A 270 KLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMA 346 (444)
T ss_dssp HHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHH---SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00113445542 445554444432221 2578 9999999988531 2235556666776665
Q ss_pred hccCCCeEEEEEccC
Q psy13788 850 SYTKRNVRLVGLSTA 864 (1034)
Q Consensus 850 ~~~~~~~~iv~lSAT 864 (1034)
... ++.++++|-.
T Consensus 347 ke~--~v~vi~lsql 359 (444)
T 3bgw_A 347 REL--DVVVIALSQL 359 (444)
T ss_dssp HHH--TCEEEEEEEC
T ss_pred HHh--CCeEEEEecC
Confidence 443 5667777653
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.17 E-value=0.98 Score=51.05 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=30.5
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWK 765 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~ 765 (1034)
..+++++++|+|||++..--+.. +.+ .+.+++++. |.+.-+.++...|.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~-l~~-~G~kVllv~~D~~R~aa~eqL~~~~ 151 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARY-FQK-RGYKVGVVCSDTWRPGAYHQLRQLL 151 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-HHT-TTCCEEEEECCCSSTHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHH-HHH-CCCeEEEEeCCCcchhHHHHHHHHH
Confidence 35788999999999876443332 333 366776666 55555545455443
No 224
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=88.17 E-value=1.5 Score=52.81 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=32.4
Q ss_pred cCcccce--EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCccccceEEEECCc
Q psy13788 144 NDIELFT--EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPH 199 (1034)
Q Consensus 144 ~gvn~pa--~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~~i~~~~ 199 (1034)
-|+|+|+ .||+ || .+-++..+.|++|||+|.|-.....++-+...
T Consensus 481 ~Glnl~~a~~Vi~-----~d------~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~ 527 (644)
T 1z3i_X 481 CGLNLIGANRLVM-----FD------PDWNPANDEQAMARVWRDGQKKTCYIYRLLST 527 (644)
T ss_dssp TTCCCTTEEEEEE-----CS------CCSSHHHHHHHHTTSSSTTCCSCEEEEEEEET
T ss_pred CCcccccCCEEEE-----EC------CCCCccHHHHHHHhhhhcCCCCceEEEEEEEC
Confidence 3899995 4553 65 34567999999999999998766555544443
No 225
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.12 E-value=0.74 Score=50.93 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=28.2
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt 753 (1034)
.+.-+++.+|+|+|||..++-.+...... +.+++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 45678999999999998766555544433 5678888754
No 226
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=87.96 E-value=0.12 Score=52.03 Aligned_cols=44 Identities=16% Similarity=0.071 Sum_probs=34.1
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR 51 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~ 51 (1034)
.+++++||+||+|.+.+ +.+..++.++.++ ....+++++|++.+
T Consensus 142 ~~~~~~iViDEah~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 142 LSRVEVAVLDEADEMLSMGFEEEVEALLSAT---PPSRQTLLFSATLP 186 (207)
T ss_dssp CTTCSEEEEESHHHHHHTTCHHHHHHHHHTS---CTTSEEEEECSSCC
T ss_pred hhhceEEEEEChhHhhccchHHHHHHHHHhC---CccCeEEEEEEecC
Confidence 46799999999999888 8888888877652 23567888887543
No 227
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.95 E-value=1 Score=48.87 Aligned_cols=140 Identities=17% Similarity=0.141 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEE-cCC--CCccc--
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVEL-TGD--VTPDI-- 787 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~--~~~~~-- 787 (1034)
.|.-+++.|++|+|||..++-.+.....+ +.+++|+..- .-..|...++.... .++....+ .|. .+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~slE-~s~~~l~~R~~~~~---~~i~~~~l~~~~~~l~~~~~~ 140 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE-MGKKENIKRLIVTA---GSINAQKIKAARRDFASEDWG 140 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEESS-SCHHHHHHHHHHHH---TTCCHHHHHSCHHHHCSSCHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEECC-CCHHHHHHHHHHHH---cCCCHHHHhcCCCCCCHHHHH
Confidence 56779999999999998665555554433 4688888732 11223233332211 11111000 111 00000
Q ss_pred ------cccCCCcEEEE-----CHhhHHHHHhccccccccCccc--EEEEecccccCCC-----ChhHHHHHHHHHHHhh
Q psy13788 788 ------QAISSASVIVT-----TPEKWDGVSRSWQNRNYVQSVA--LIIIDEIHLLGED-----RGPVLEVIVSRVNFIS 849 (1034)
Q Consensus 788 ------~~~~~~~IiV~-----Tpe~l~~l~~~~~~~~~l~~l~--~lViDEaH~l~~~-----~~~~~~~il~rl~~l~ 849 (1034)
......++.+. |++.+...+++.... ..++ +||||-.+.+... ....+..+...++.+.
T Consensus 141 ~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~---~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lA 217 (315)
T 3bh0_A 141 KLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMA 217 (315)
T ss_dssp HHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHT---SSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00112345443 344444444432211 2578 9999999988531 2245566677776665
Q ss_pred hccCCCeEEEEEcc
Q psy13788 850 SYTKRNVRLVGLST 863 (1034)
Q Consensus 850 ~~~~~~~~iv~lSA 863 (1034)
... ++.++++|-
T Consensus 218 k~~--~i~vi~lsq 229 (315)
T 3bh0_A 218 REL--DVVVIALSQ 229 (315)
T ss_dssp HHH--TCEEEEEEC
T ss_pred HHh--CCeEEEEee
Confidence 443 456677654
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.71 E-value=0.76 Score=51.87 Aligned_cols=18 Identities=39% Similarity=0.667 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChhhHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~ 731 (1034)
.+.+++.+|+|+|||+.+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 467999999999999854
No 229
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.61 E-value=0.63 Score=48.24 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=26.6
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
.|.-+++.|++|+|||..++-.+.+...+ .+..++|+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeec
Confidence 56789999999999997665544443333 256677776
No 230
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=87.58 E-value=0.33 Score=39.36 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhc
Q psy13788 503 PILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWE 550 (1034)
Q Consensus 503 p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~ 550 (1034)
.++++..+.+|...|| |+++++-.++++|..+-. ++....+|.+.++.
T Consensus 12 lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~ 61 (70)
T 1u9l_A 12 LDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 61 (70)
T ss_dssp HTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHH
Confidence 6999999999999999 999999999999988754 66677777776654
No 231
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.54 E-value=1.3 Score=49.63 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChhhHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~ 731 (1034)
.+.+++.+|+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 467999999999999854
No 232
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.43 E-value=0.83 Score=50.20 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=19.5
Q ss_pred HHHHHhcCC--CcEEEEcCCCChhhHHHHH
Q psy13788 706 IFHCLYHTD--NNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 706 ai~~l~~~~--~~vll~apTGsGKT~~~~l 733 (1034)
.+...+..+ .++++.+|+|+|||..+..
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHH
Confidence 333333344 5699999999999986543
No 233
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.38 E-value=0.99 Score=50.90 Aligned_cols=18 Identities=44% Similarity=0.693 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChhhHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~ 731 (1034)
.+-+++.+|+|+|||+.+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999854
No 234
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.21 E-value=0.73 Score=50.79 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=29.0
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt 753 (1034)
.+.-+++.+|+|+|||..++-.+...... +.+++|+..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 56779999999999998776655554433 5678888753
No 235
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=87.19 E-value=0.33 Score=50.48 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=31.7
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhc-cccceeecccchh
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQ-IGQEVFKGVKSLN 50 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~-~~~~~~~~~~~~~ 50 (1034)
.+++++|||||+|.+.+ +++..++.+...+... ....+++++|++.
T Consensus 173 ~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 173 LASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp CTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred cccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 46899999999999988 7666666665543222 2356889998864
No 236
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=87.13 E-value=1.2 Score=51.45 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=17.1
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
....+++.+|+|+|||+++-.
T Consensus 237 ~~~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHH
Confidence 456799999999999996543
No 237
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=87.03 E-value=0.8 Score=50.62 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCChhhHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~ 734 (1034)
.+.+++.+|+|+|||..+-..
T Consensus 84 ~~~iLL~GppGtGKT~la~al 104 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAV 104 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHH
Confidence 357999999999999866443
No 238
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=86.90 E-value=1.2 Score=37.43 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHH
Q psy13788 503 PILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKV 544 (1034)
Q Consensus 503 p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i 544 (1034)
|++++..++.|.++++ |..|+..+++.|+.++.. +-+...++
T Consensus 10 p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l 53 (83)
T 2kz3_A 10 PGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVAL 53 (83)
T ss_dssp TTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHH
Confidence 8999999999999999 999999999999999876 43333333
No 239
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=86.88 E-value=0.15 Score=51.99 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=34.3
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchh
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLN 50 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~ 50 (1034)
.+++++|||||+|.+.+ +.+..++.++.++ ....|++++|++.
T Consensus 148 ~~~~~~lViDEah~~~~~~~~~~l~~i~~~~---~~~~~~l~~SAT~ 191 (219)
T 1q0u_A 148 VHTAHILVVDEADLMLDMGFITDVDQIAARM---PKDLQMLVFSATI 191 (219)
T ss_dssp GGGCCEEEECSHHHHHHTTCHHHHHHHHHTS---CTTCEEEEEESCC
T ss_pred cCcceEEEEcCchHHhhhChHHHHHHHHHhC---CcccEEEEEecCC
Confidence 57899999999999998 8888888877663 2356888888753
No 240
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=86.58 E-value=0.16 Score=51.95 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=34.0
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR 51 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~ 51 (1034)
.+++++|||||+|.+.+ +.+..++.++.++ ....++++++++.+
T Consensus 153 ~~~~~~iViDEah~~~~~~~~~~l~~i~~~~---~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 153 TDKIKMFILDEADEMLSSGFKEQIYQIFTLL---PPTTQVVLLSATMP 197 (224)
T ss_dssp CTTCCEEEEETHHHHHHTTCHHHHHHHHHHS---CTTCEEEEEESSCC
T ss_pred hhhCcEEEEcChhHHhhhhhHHHHHHHHHhC---CccCeEEEEEeecC
Confidence 46789999999999988 8887787777653 23568899887543
No 241
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.52 E-value=1.5 Score=48.09 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=15.1
Q ss_pred cEEEEcCCCChhhHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l 733 (1034)
++++.+|+|+|||..+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~ 55 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMA 55 (354)
T ss_dssp CEEEECSTTSSHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 599999999999986543
No 242
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.42 E-value=1.8 Score=43.70 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=25.4
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P 752 (1034)
.|.-+++.+|+|+|||..+...+. . .+.+++|+.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~--~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---L--SGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---H--HCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---H--cCCcEEEEEC
Confidence 566789999999999986655443 2 2567887763
No 243
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.29 E-value=4.1 Score=45.54 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=16.3
Q ss_pred CCcEEE--EcCCCChhhHHHHHH
Q psy13788 714 DNNVLL--GAPTGSGKTIAAEIT 734 (1034)
Q Consensus 714 ~~~vll--~apTGsGKT~~~~l~ 734 (1034)
+..+++ .+|.|+|||..+...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~ 72 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFT 72 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHH
Confidence 446888 899999999865443
No 244
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.05 E-value=0.94 Score=46.89 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=24.7
Q ss_pred cCCCcEEEEcCCCChhhHHHHHHHHHHH-HhCCCCeEEEEc
Q psy13788 712 HTDNNVLLGAPTGSGKTIAAEITCFRVF-KQCPEAKVVYIA 751 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~~l~il~~l-~~~~~~~~lvi~ 751 (1034)
..|.-+.+.+|+|+|||+.....+...+ .. +..++++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~ 66 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVT 66 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEE
Confidence 3678899999999999986554442233 33 34455544
No 245
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=85.89 E-value=5.7 Score=42.56 Aligned_cols=43 Identities=5% Similarity=0.060 Sum_probs=26.2
Q ss_pred ccccCcccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEc
Q psy13788 813 RNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862 (1034)
Q Consensus 813 ~~~l~~l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lS 862 (1034)
.......+++|+||||.+.. .....++..+ ...+..+.+|+.+
T Consensus 77 ~p~~~~~kvviIdead~lt~---~a~naLLk~L----Eep~~~t~fIl~t 119 (305)
T 2gno_A 77 SPELYTRKYVIVHDCERMTQ---QAANAFLKAL----EEPPEYAVIVLNT 119 (305)
T ss_dssp CCSSSSSEEEEETTGGGBCH---HHHHHTHHHH----HSCCTTEEEEEEE
T ss_pred ccccCCceEEEeccHHHhCH---HHHHHHHHHH----hCCCCCeEEEEEE
Confidence 33445678999999999863 2233333322 3344566666665
No 246
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=85.78 E-value=3.3 Score=45.62 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.4
Q ss_pred cEEEEcCCCChhhHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~ 734 (1034)
.+++.+|+|+|||..+...
T Consensus 40 ~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999866443
No 247
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=85.72 E-value=0.2 Score=51.94 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=33.6
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR 51 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~ 51 (1034)
.+++++|||||+|.+.+ +.+..++.++.++ ....|++++|++.+
T Consensus 171 ~~~~~~lViDEah~~~~~~~~~~l~~i~~~~---~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 171 PKWIKMFVLDEADEMLSRGFKDQIYEIFQKL---NTSIQVVLLSATMP 215 (237)
T ss_dssp STTCCEEEEESHHHHHHTTCHHHHHHHHHHS---CTTCEEEEECSSCC
T ss_pred cccCcEEEECCchHhhccCcHHHHHHHHHhC---CCCCeEEEEEEecC
Confidence 46799999999998887 7777777777653 24568899887543
No 248
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=85.67 E-value=0.71 Score=49.86 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=15.3
Q ss_pred cEEEEcCCCChhhHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l 733 (1034)
++++.+|+|+|||..+..
T Consensus 40 ~~ll~G~~G~GKt~la~~ 57 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIA 57 (319)
T ss_dssp CEEEESSSSSSHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHH
Confidence 699999999999986543
No 249
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.66 E-value=1.8 Score=48.95 Aligned_cols=19 Identities=42% Similarity=0.737 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
..+.+++.+|+|+|||+.+
T Consensus 242 pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCSEEEECSCTTSSHHHHH
T ss_pred CCCceEeeCCCCCcHHHHH
Confidence 3467999999999999854
No 250
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.46 E-value=1.6 Score=46.70 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChhhHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~ 734 (1034)
..+++.+|+|+|||..+...
T Consensus 37 ~~lLl~GppGtGKT~la~ai 56 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELV 56 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45888999999999865543
No 251
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.39 E-value=0.7 Score=50.30 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChhhHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~ 732 (1034)
+.+++.+|+|+|||..+.
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 579999999999998553
No 252
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.38 E-value=0.17 Score=52.27 Aligned_cols=43 Identities=9% Similarity=0.120 Sum_probs=34.1
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchh
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLN 50 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~ 50 (1034)
.+++++|||||+|.+.+ +.+..++.++.++ ....+++++|++.
T Consensus 169 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~---~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 169 ATDLQMLVLDEADRILDMGFADTMNAVIENL---PKKRQTLLFSATQ 212 (236)
T ss_dssp CTTCCEEEETTHHHHHHTTTHHHHHHHHHTS---CTTSEEEEEESSC
T ss_pred cccccEEEEeChHHHhcCCcHHHHHHHHHhC---CCCCeEEEEEeeC
Confidence 46889999999999988 8888888887663 2356789988753
No 253
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.13 E-value=1.9 Score=44.25 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=26.5
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhC----CCCeEEEEcC
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQC----PEAKVVYIAP 752 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~----~~~~~lvi~P 752 (1034)
.|.-+.+.+|+|+|||..+...+...+... .+..++|+.-
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 567799999999999986655444322211 1467777753
No 254
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=84.53 E-value=0.28 Score=50.51 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=32.3
Q ss_pred cccccEEEEeeeecccC-C-CCchHHHHHHhhhhccccceeecccchhh
Q psy13788 5 TELVKLLIIDEVHLLHG-D-RGPVIEALVARTLRQIGQEVFKGVKSLNR 51 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~-RG~~le~li~~~~~~~~~~~~~~~~~~~~ 51 (1034)
.+++++|||||+|.+.+ + .+..++.++.++ ....|+++++++.+
T Consensus 164 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~---~~~~~~l~lSAT~~ 209 (230)
T 2oxc_A 164 PGSIRLFILDEADKLLEEGSFQEQINWIYSSL---PASKQMLAVSATYP 209 (230)
T ss_dssp GGGCCEEEESSHHHHHSTTSSHHHHHHHHHHS---CSSCEEEEEESCCC
T ss_pred cccCCEEEeCCchHhhcCcchHHHHHHHHHhC---CCCCeEEEEEeccC
Confidence 47899999999999987 4 566666666542 23567999988643
No 255
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.38 E-value=1.3 Score=50.46 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChhhHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~ 732 (1034)
.++++.+|+|+|||..+.
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 469999999999998654
No 256
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.28 E-value=1.5 Score=48.25 Aligned_cols=41 Identities=22% Similarity=0.081 Sum_probs=27.8
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKA 755 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~ 755 (1034)
.|.-+++.+|+|+|||+.+.-.+..... .+.+++|+..-..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccc
Confidence 3456889999999999865544433322 3577888876543
No 257
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=83.90 E-value=0.8 Score=49.08 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=55.0
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCCCcE
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASV 795 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~I 795 (1034)
-+.+.+|+|+|||..++-.+.....+.++.+++|+..-.++-.. ++. . +|+. . .++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~-~----lGvd---------~-------d~l 85 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLR-S----MGVD---------P-------ERV 85 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHH-H----TTCC---------G-------GGE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHH-H----hCCC---------H-------HHe
Confidence 58899999999999877766666555457899999876555332 122 2 2321 1 134
Q ss_pred EEECHhhHHHH----HhccccccccCcccEEEEecccccC
Q psy13788 796 IVTTPEKWDGV----SRSWQNRNYVQSVALIIIDEIHLLG 831 (1034)
Q Consensus 796 iV~Tpe~l~~l----~~~~~~~~~l~~l~~lViDEaH~l~ 831 (1034)
++..|...... ...... ..-..+++||+|=+..+.
T Consensus 86 lv~~~~~~E~~~l~i~~~l~~-i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 86 IHTPVQSLEQLRIDMVNQLDA-IERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp EEEECSBHHHHHHHHHHHHHT-CCTTCCEEEEEECSTTCB
T ss_pred EEEcCCCHHHHHHHHHHHHHH-hhccCceEEEEecccccc
Confidence 55555444332 221100 112468999999999874
No 258
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=83.66 E-value=0.76 Score=43.34 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=18.5
Q ss_pred hcCCCcEEEEcCCCChhhHHHH
Q psy13788 711 YHTDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 711 ~~~~~~vll~apTGsGKT~~~~ 732 (1034)
...+.++++.+|+|+|||.++.
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3477899999999999998654
No 259
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=83.08 E-value=1.8 Score=47.24 Aligned_cols=19 Identities=42% Similarity=0.770 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChhhHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l 733 (1034)
.++++.+|+|+|||..+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 5799999999999986533
No 260
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=82.70 E-value=0.28 Score=51.26 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=34.1
Q ss_pred cccccEEEEeeeecccC-CCCchHHHHHHhhhhccccceeecccchhh
Q psy13788 5 TELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQIGQEVFKGVKSLNR 51 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d-~RG~~le~li~~~~~~~~~~~~~~~~~~~~ 51 (1034)
.+++++|||||+|.+.+ +.+..++.++..+ ....++++++++.+
T Consensus 184 l~~~~~lViDEah~l~~~~~~~~l~~i~~~~---~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 184 LRALKYLVMDEADRILNMDFETEVDKILKVI---PRDRKTFLFSATMT 228 (249)
T ss_dssp CTTCCEEEECSHHHHHHTTCHHHHHHHHHSS---CSSSEEEEEESSCC
T ss_pred ccccCEEEEcChhhhhccChHHHHHHHHHhC---CCCCeEEEEeccCC
Confidence 46789999999999988 8888888887663 23467888887543
No 261
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=82.19 E-value=0.89 Score=50.01 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=28.6
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt 753 (1034)
.|+-+++.+|+|+|||..+...+...... +.+++|+.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence 45679999999999998766655554433 6778887743
No 262
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.90 E-value=0.83 Score=42.95 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=17.2
Q ss_pred cCCCcEEEEcCCCChhhHHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~ 731 (1034)
..+.++++.+|+|+|||.++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 46789999999999999843
No 263
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=81.58 E-value=1.9 Score=46.62 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
..++++.+|+|+|||..+..
T Consensus 38 ~~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 46899999999999986543
No 264
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.31 E-value=1.4 Score=58.88 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=35.0
Q ss_pred HHHHhc-----CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHH
Q psy13788 707 FHCLYH-----TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKA 755 (1034)
Q Consensus 707 i~~l~~-----~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~ 755 (1034)
+..++. .++++++.+|+|+|||..+...+..... .+.+++|+..--+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcccc
Confidence 666653 5789999999999999887666555443 3788999886643
No 265
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=80.25 E-value=2.2 Score=47.97 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=29.4
Q ss_pred CChhHHHHHHHHhc-CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEE
Q psy13788 699 FNPIQTQIFHCLYH-TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYI 750 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~-~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi 750 (1034)
+.+-+.+++..++. .+..+++.+|||||||+..-. ++..+.. ..++++++
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~a-llg~l~~-~~g~I~~~ 201 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYA-GLQELNS-SERNILTV 201 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHH-HHHHHCC-TTSCEEEE
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHH-HHhhcCC-CCCEEEEe
Confidence 33456667765543 445688999999999984322 2333322 24455554
No 266
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=79.81 E-value=7.4 Score=46.17 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=20.2
Q ss_pred HHHHhcCCCcEEEEcCCCChhhHHHH
Q psy13788 707 FHCLYHTDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 707 i~~l~~~~~~vll~apTGsGKT~~~~ 732 (1034)
+......+..+++.+|+|+|||+.+.
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHH
Confidence 33334578899999999999998653
No 267
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=78.04 E-value=1.5 Score=50.92 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=24.9
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHH
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIA 730 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~ 730 (1034)
+++.+.+-+......+.++++++|||||||+.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 55556666665556888999999999999984
No 268
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=77.60 E-value=4.4 Score=46.37 Aligned_cols=19 Identities=42% Similarity=0.725 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChhhHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~ 732 (1034)
.+.+++.+|+|+|||+.+-
T Consensus 49 p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999998653
No 269
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=76.99 E-value=2.7 Score=41.75 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=22.5
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEE
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYI 750 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi 750 (1034)
.++++.+|+|+|||..+... ...+.. .+..++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i-~~~~~~-~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAI-ANELAK-RNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHH-HHHHHT-TTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHH-HHHHHH-cCCeEEEE
Confidence 68999999999999865433 333333 24455554
No 270
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=76.57 E-value=2.4 Score=46.00 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhc
Q psy13788 503 PILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWE 550 (1034)
Q Consensus 503 p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~ 550 (1034)
+|+++..+.+|.++|+ |+++++.+++.+|..+.. ++....+++..++.
T Consensus 9 ~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 9 PGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 (322)
T ss_dssp TTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHH
Confidence 8999999999999999 999999999999998765 66677777777753
No 271
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=76.57 E-value=0.9 Score=48.28 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=30.6
Q ss_pred ccccccEEEEeeeecccCCCCchHHHHHHhhhhccccceeecccchh
Q psy13788 4 LTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLN 50 (1034)
Q Consensus 4 ~~~~v~~vViDEvH~l~d~RG~~le~li~~~~~~~~~~~~~~~~~~~ 50 (1034)
+.+++++|||||+|.+. +..++.++.++. ...+++|+|++.
T Consensus 222 ~~~~~~~vIiDEaH~~~---~~~~~~il~~~~---~~~~~l~lSATp 262 (282)
T 1rif_A 222 WFSQFGMMMNDECHLAT---GKSISSIISGLN---NCMFKFGLSGSL 262 (282)
T ss_dssp GGGGEEEEEEETGGGCC---HHHHHHHTTTCT---TCCEEEEECSSC
T ss_pred HHhhCCEEEEECCccCC---cccHHHHHHHhh---cCCeEEEEeCCC
Confidence 56889999999999996 346776666532 256788988753
No 272
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=76.54 E-value=12 Score=43.17 Aligned_cols=18 Identities=50% Similarity=0.645 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChhhHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~ 732 (1034)
+.+++.+|+|+|||+.+-
T Consensus 65 ~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp SEEEEECSSSSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 459999999999998543
No 273
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=76.42 E-value=1.2 Score=33.76 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=41.8
Q ss_pred cCHHHHHHHhccccceeecccCccccCCCccccCCChhHHHHHHHHHHHHHHHhhhcCceEEe
Q psy13788 270 GNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFN 332 (1034)
Q Consensus 270 ~~~~~~~~~l~~T~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~ 332 (1034)
-+.++++++++++=.+.++..--..||++.+ .+-.+|..|++.|+|+..
T Consensus 10 ~~e~~lL~yIr~sGGildI~~~a~kygV~kd--------------eV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 10 ITERELLDYIVNNGGFLDIEHFSKVYGVEKQ--------------EVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp CCHHHHHHHHHHTTSEEEHHHHHHHHCCCHH--------------HHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHcCCEEeHHHHHHHhCCCHH--------------HHHHHHHHHHHCCCeecc
Confidence 4678889999999999988888888998764 477899999999999864
No 274
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=76.07 E-value=4.3 Score=49.51 Aligned_cols=17 Identities=47% Similarity=0.800 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChhhHHH
Q psy13788 715 NNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~ 731 (1034)
+.+++.+|.|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999944
No 275
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=75.92 E-value=9.6 Score=46.89 Aligned_cols=19 Identities=42% Similarity=0.705 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
.++.+++.+|+|+|||+.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999854
No 276
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=75.89 E-value=1.9 Score=35.76 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=38.9
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHh
Q psy13788 487 TPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCA 548 (1034)
Q Consensus 487 ~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~ 548 (1034)
..|..+ |+|++..+++|.+. + +++++.++++++|..+-. .+..+..|..++
T Consensus 24 ~~L~~I----------~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 24 SSLETI----------EGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp CGGGGC----------TTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHhcC----------CCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 467788 99999999999876 5 899999999999877622 344555555544
No 277
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=74.92 E-value=9.2 Score=44.22 Aligned_cols=142 Identities=11% Similarity=0.085 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEE----EcCCCCccc-
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE----LTGDVTPDI- 787 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~----~~g~~~~~~- 787 (1034)
.|.-+++.+++|+|||..++-.+.....+ .+.+++|+.---. ..|...++.... .++.... ..|....+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s-~~~l~~r~~~~~---~~~~~~~~~~~~~g~l~~~~~ 315 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEES-VEETAEDLIGLH---NRVRLRQSDSLKREIIENGKF 315 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSC-HHHHHHHHHHHH---TTSCCTTCHHHHHHHHHTSHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCC-HHHHHHHHHHHH---cCCChhhccccccCCCCHHHH
Confidence 56679999999999998765555554332 2567888764211 123333332111 1111100 000000000
Q ss_pred -----cccCCCcEEEE------CHhhHHHHHhccccccccCcccEEEEecccccCC-----CChhHHHHHHHHHHHhhhc
Q psy13788 788 -----QAISSASVIVT------TPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-----DRGPVLEVIVSRVNFISSY 851 (1034)
Q Consensus 788 -----~~~~~~~IiV~------Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~-----~~~~~~~~il~rl~~l~~~ 851 (1034)
......++.+. |++.+...++.... -..+++||||=.+.+.. .....+..++..++.+...
T Consensus 316 ~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~---~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~ 392 (503)
T 1q57_A 316 DQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRS---GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKS 392 (503)
T ss_dssp HHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHH---TTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHH---hcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00112334443 33444333332211 13588999999988753 1223455666677666544
Q ss_pred cCCCeEEEEEccC
Q psy13788 852 TKRNVRLVGLSTA 864 (1034)
Q Consensus 852 ~~~~~~iv~lSAT 864 (1034)
. ++.+++++-.
T Consensus 393 ~--~i~vi~~~q~ 403 (503)
T 1q57_A 393 T--GVVLVVICHL 403 (503)
T ss_dssp H--TCEEEEEEEC
T ss_pred H--CCeEEEEEcC
Confidence 3 4566666543
No 278
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=74.38 E-value=3 Score=44.83 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
+.++++.+|+|+|||..+....-..... .+..++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~-~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEK-KGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHH-SCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHh-cCCcEEEEE
Confidence 5789999999999998765443333303 245565543
No 279
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=74.33 E-value=5.4 Score=48.43 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=24.0
Q ss_pred hcccHHHHHHHHHHHHHHHhccCCCCCccccc
Q psy13788 461 HRNNAIMAARFLKFALMFETKQWPHETPLRQI 492 (1034)
Q Consensus 461 ~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~ql 492 (1034)
-..|......+-.|.+.|.-+......||...
T Consensus 724 D~~W~~hl~~m~~lr~~i~lr~~~q~dp~~ey 755 (844)
T 1tf5_A 724 DSKWMDHIDAMDQLRQGIHLRAYAQTNPLREY 755 (844)
T ss_dssp HHHHHHHHHHHHHHHHTGGGTSCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCHHHHH
Confidence 35677777778788888887777777777655
No 280
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=74.16 E-value=2.4 Score=48.21 Aligned_cols=44 Identities=16% Similarity=0.369 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~ 758 (1034)
...++++.++||||||......+.+.+.. +..++|+=|-.++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~--g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLR--GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHT--TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEeCCCchhH
Confidence 35789999999999999753233333333 678888889888754
No 281
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=73.79 E-value=5.7 Score=48.15 Aligned_cols=32 Identities=6% Similarity=-0.016 Sum_probs=24.0
Q ss_pred hcccHHHHHHHHHHHHHHHhccCCCCCccccc
Q psy13788 461 HRNNAIMAARFLKFALMFETKQWPHETPLRQI 492 (1034)
Q Consensus 461 ~~~~~~~~~~~l~L~k~l~~~~w~~~~~L~ql 492 (1034)
-..|......+-.|.+.|.-+......||...
T Consensus 764 D~~W~~hl~~md~Lr~~i~lr~y~q~dP~~ey 795 (853)
T 2fsf_A 764 DSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEY 795 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSSCSSSCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCHHHHH
Confidence 35677777777788888877777777788765
No 282
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.70 E-value=4.2 Score=44.60 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=45.3
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhh
Q psy13788 487 TPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAW 549 (1034)
Q Consensus 487 ~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~ 549 (1034)
.+|.+| |++++..+.+|.++|+ |+++++.+++.+|..... ++....++.+.+.
T Consensus 35 ~~l~~l----------~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~ 89 (349)
T 1pzn_A 35 RSIEDL----------PGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAAR 89 (349)
T ss_dssp CCSSCC----------TTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccHHHc----------CCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence 478888 9999999999999999 999999999999998876 6566666666654
No 283
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=71.27 E-value=2.2 Score=45.83 Aligned_cols=44 Identities=9% Similarity=0.079 Sum_probs=28.6
Q ss_pred cccccEEEEeeeecccCCCC--chHHHHHHhhhhccccceeecccchhh
Q psy13788 5 TELVKLLIIDEVHLLHGDRG--PVIEALVARTLRQIGQEVFKGVKSLNR 51 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d~RG--~~le~li~~~~~~~~~~~~~~~~~~~~ 51 (1034)
++++++|||||+|.+.|..| ..+..++.. .....|++++|++.+
T Consensus 233 l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~---~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 233 PKKIKVFVLDEADVMIATQGHQDQSIRIQRM---LPRNCQMLLFSATFE 278 (300)
T ss_dssp GGGCSEEEETTHHHHHHSTTHHHHHHHHHTT---SCTTCEEEEEESCCC
T ss_pred hhhceEEEEeCHHHHhhccCcHHHHHHHHHh---CCCCCEEEEEeccCC
Confidence 57899999999999887333 333333322 123578888887543
No 284
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=68.92 E-value=4.3 Score=45.33 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKA 755 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~ 755 (1034)
.+.++++.+|||+|||...-.-+.+... .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~--~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM--QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH--CCCEEEEEeCCcC
Confidence 5678999999999999866555444432 3678888888755
No 285
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=68.86 E-value=17 Score=34.80 Aligned_cols=21 Identities=38% Similarity=0.363 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCChhhHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~ 734 (1034)
..++++.+|+|+|||..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 467999999999999866543
No 286
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=68.60 E-value=4.3 Score=44.55 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=16.3
Q ss_pred cCCCcEEEEcCCCChhhHHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~ 731 (1034)
..+..+++.+|||||||+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35568999999999999843
No 287
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=67.95 E-value=8.5 Score=31.27 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhcC
Q psy13788 504 ILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWEI 551 (1034)
Q Consensus 504 ~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~~ 551 (1034)
.++....+-|.++|| |+.||...+.+++.++=. .++--++|.+.++.+
T Consensus 15 ~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 15 DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp CCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 688888999999999 999999999999877622 233444555555543
No 288
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=67.95 E-value=4.9 Score=50.72 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=37.2
Q ss_pred cccccccchhhhccCcccce-EEEecCceeecCCCCeeeecChhhHHHHhhccCCCCcc--ccceEEEECC
Q psy13788 131 DLGRTASNYYIKHNDIELFT-EHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYN--TSGHATIITP 198 (1034)
Q Consensus 131 ~l~~~~~~~~~~~~gvn~pa-~vii~~~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d--~~G~~~i~~~ 198 (1034)
.+..++.+..+.. |++.|. .|+ ++| ++++...|.|++||+||++-+ +.|.+|-+..
T Consensus 649 ~i~ILIvvd~llt-GfDiP~l~tl-----ylD------kpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 649 DIDLLIVVGMFLT-GFDAPTLNTL-----FVD------KNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSSEEEESSTTSS-SCCCTTEEEE-----EEE------SCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred CCeEEEEcchHHh-CcCcccccEE-----EEc------cCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 4556666666663 899997 443 345 445668999999999998764 3455554443
No 289
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=67.93 E-value=3.3 Score=40.86 Aligned_cols=16 Identities=25% Similarity=0.723 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChhhHH
Q psy13788 715 NNVLLGAPTGSGKTIA 730 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~ 730 (1034)
+.+++++|+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999983
No 290
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=67.69 E-value=1.1 Score=46.04 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=0.0
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhh
Q psy13788 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYM 534 (1034)
Q Consensus 486 ~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~ 534 (1034)
...|.++ ||||+.++++|.+.|+ |+++|..++..+|..+
T Consensus 14 ~~~L~~I----------pGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v 53 (241)
T 1vq8_Y 14 YTELTDI----------SGVGPSKAESLREAGFESVEDVRGADQSALADV 53 (241)
T ss_dssp --------------------------------------------------
T ss_pred hhHHhcC----------CCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhc
Confidence 4578888 9999999999988899 9999999999999887
No 291
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=67.31 E-value=3.5 Score=43.10 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=18.1
Q ss_pred hcCCCcEEEEcCCCChhhHHHH
Q psy13788 711 YHTDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 711 ~~~~~~vll~apTGsGKT~~~~ 732 (1034)
...+.++++.+|+|+|||..+.
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHH
T ss_pred hCCCCCEEEECCCCCcHHHHHH
Confidence 3467789999999999998553
No 292
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=66.55 E-value=4 Score=34.99 Aligned_cols=39 Identities=18% Similarity=0.334 Sum_probs=34.1
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhh
Q psy13788 487 TPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYML 535 (1034)
Q Consensus 487 ~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l 535 (1034)
..|..| |.|++...+.|.+.|| |+++|..+.+.+.-.-+
T Consensus 4 ~~L~~L----------PNiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL 43 (93)
T 3bqs_A 4 ANLSEL----------PNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRI 43 (93)
T ss_dssp SCGGGS----------TTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHhhcC----------CCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHH
Confidence 456777 9999999999999999 99999999998876544
No 293
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=66.52 E-value=3.4 Score=40.34 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
.|+-+++++|+|+|||+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999843
No 294
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=66.49 E-value=7.4 Score=47.45 Aligned_cols=18 Identities=44% Similarity=0.709 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChhhHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~ 731 (1034)
.+.+++.+|.|+|||+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSCCEEESSTTSSHHHHH
T ss_pred CceEEEecCCCCCchHHH
Confidence 456999999999999854
No 295
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=66.29 E-value=6.4 Score=38.94 Aligned_cols=38 Identities=24% Similarity=0.155 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcC
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~P 752 (1034)
...++++..++|.|||.+++--+++.+.. +.+++++.-
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQF 64 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQF 64 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEES
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEe
Confidence 44689999999999999999988888876 788888843
No 296
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=65.36 E-value=3.1 Score=45.11 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChhhHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~ 732 (1034)
+..++|.+|||+|||..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468999999999998553
No 297
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=64.71 E-value=3.8 Score=41.10 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=16.5
Q ss_pred cCCCcEEEEcCCCChhhHHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~ 731 (1034)
..|.-+++.+|+|+|||+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 35677899999999999843
No 298
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=64.64 E-value=3.6 Score=40.97 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
.|+-+.+++|+|+|||+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5678999999999999854
No 299
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=64.61 E-value=6.6 Score=37.98 Aligned_cols=20 Identities=40% Similarity=0.388 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
..++++.+|+|+|||..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~ 62 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEG 62 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 36799999999999986543
No 300
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=64.58 E-value=9.1 Score=50.48 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=33.9
Q ss_pred HHHHHhc-----CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcH
Q psy13788 706 IFHCLYH-----TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLK 754 (1034)
Q Consensus 706 ai~~l~~-----~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~ 754 (1034)
.++.++. .|+-+++.+|+|+|||..++-.+...... +.+++|+.---
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~ 421 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEH 421 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTS
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccC
Confidence 3555553 46779999999999999777666665543 67888887443
No 301
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=64.49 E-value=3.2 Score=43.42 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=16.9
Q ss_pred cCCCcEEEEcCCCChhhHHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~ 731 (1034)
..|..+.+.+|||||||+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 46778999999999999854
No 302
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=64.08 E-value=3.2 Score=42.54 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=27.2
Q ss_pred cccccEEEEeeeecccCCCCchHHH---HHHhhhhccccceeecccchhh
Q psy13788 5 TELVKLLIIDEVHLLHGDRGPVIEA---LVARTLRQIGQEVFKGVKSLNR 51 (1034)
Q Consensus 5 ~~~v~~vViDEvH~l~d~RG~~le~---li~~~~~~~~~~~~~~~~~~~~ 51 (1034)
++++++|||||+|.. |...+. .+.+++....+.|++++|++..
T Consensus 174 l~~~~~lVlDEah~~----~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~ 219 (235)
T 3llm_A 174 IRGISHVIVDEIHER----DINTDFLLVVLRDVVQAYPEVRIVLMSATID 219 (235)
T ss_dssp CTTCCEEEECCTTSC----CHHHHHHHHHHHHHHHHCTTSEEEEEECSSC
T ss_pred hcCCcEEEEECCccC----CcchHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 578999999999963 332222 2333333345678888887644
No 303
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=63.89 E-value=11 Score=40.45 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADWK 765 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~~ 765 (1034)
++-+++.+|+|+|||+....-+... .. .+.+++++. +.+.-+.++...|.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l-~~-~g~kV~lv~~D~~r~~a~eqL~~~~ 155 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF-VD-EGKSVVLAAADTFRAAAIEQLKIWG 155 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH-HH-TTCCEEEEEECTTCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH-Hh-cCCEEEEEccccccHHHHHHHHHHH
Confidence 4457889999999997654433222 22 255665554 33433333344443
No 304
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=63.81 E-value=5.8 Score=33.99 Aligned_cols=39 Identities=18% Similarity=0.334 Sum_probs=34.5
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhh
Q psy13788 487 TPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYML 535 (1034)
Q Consensus 487 ~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l 535 (1034)
..|..| |.|++...+.|.+.|| |+++|..+.+.+.-.-|
T Consensus 4 ~~L~dL----------PNig~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rL 43 (93)
T 3mab_A 4 ANLSEL----------PNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRI 43 (93)
T ss_dssp CCGGGS----------TTCCHHHHHHHHHTTCCSHHHHHHHCHHHHHHHH
T ss_pred HHHhhC----------CCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHH
Confidence 467788 9999999999999999 99999999998876544
No 305
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=63.78 E-value=3.9 Score=45.26 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=16.8
Q ss_pred cCCCcEEEEcCCCChhhHHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~ 731 (1034)
..+..+++++|||||||+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 46778999999999999854
No 306
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=63.48 E-value=7.2 Score=39.55 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=22.7
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEE
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVV 748 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~l 748 (1034)
++++.++.|+|||..++--+.....+ +.+++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~--G~~V~ 38 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ--GVRVM 38 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT--TCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC--CCCEE
Confidence 69999999999999876665555444 44443
No 307
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=63.42 E-value=8 Score=44.30 Aligned_cols=52 Identities=19% Similarity=0.136 Sum_probs=39.4
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhh
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFE 769 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~ 769 (1034)
.+....+.+-||||||++..-.+ .+ .+..+|||+|+...|.|.+.+++..++
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~----~~-~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA----ER-HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH----HH-SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHHH----HH-hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45678999999999998533222 11 256799999999999999999985443
No 308
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=63.12 E-value=11 Score=37.96 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=40.9
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCc-hhHHHHHHHh
Q psy13788 487 TPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDP-HVGDKVKQCA 548 (1034)
Q Consensus 487 ~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~-~~g~~i~~~~ 548 (1034)
++|-.+ ||||+.++++|.++ | |++.+.+++.+||..+ -++ ..++.|++++
T Consensus 168 s~LdgI----------pGIG~k~ak~Ll~~-FgSl~~i~~As~EeL~~V-IG~~~~A~~I~~~f 219 (220)
T 2nrt_A 168 SVLDNV----------PGIGPIRKKKLIEH-FGSLENIRSASLEEIARV-IGSTEIARRVLDIL 219 (220)
T ss_dssp HHHTTS----------TTCCHHHHHHHHHH-HCSHHHHHTSCHHHHHHH-HTCHHHHHHHHHHC
T ss_pred ccccCC----------CCcCHHHHHHHHHH-cCCHHHHHhCCHHHHHHH-hChHHHHHHHHHHh
Confidence 567778 99999999999874 6 9999999999999988 455 6677766553
No 309
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=63.02 E-value=4.8 Score=44.35 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=18.7
Q ss_pred HHHhcCCCcEEEEcCCCChhhHH
Q psy13788 708 HCLYHTDNNVLLGAPTGSGKTIA 730 (1034)
Q Consensus 708 ~~l~~~~~~vll~apTGsGKT~~ 730 (1034)
......|..+++++|||||||+.
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHH
T ss_pred HHHHhcCCEEEEECCCCCCHHHH
Confidence 33345888999999999999983
No 310
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=62.64 E-value=4.3 Score=39.58 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITC 735 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~i 735 (1034)
...+++.+|+|||||+++....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999765443
No 311
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=62.60 E-value=4.3 Score=40.26 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=18.8
Q ss_pred CCCcEEEEcCCCChhhHHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITC 735 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~i 735 (1034)
.+..+++.+|+|||||+++-.-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 67789999999999999765443
No 312
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=62.35 E-value=3.1 Score=41.64 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=16.9
Q ss_pred ccccccEEEEeeeecccCCCCchHHHHHHhh
Q psy13788 4 LTELVKLLIIDEVHLLHGDRGPVIEALVART 34 (1034)
Q Consensus 4 ~~~~v~~vViDEvH~l~d~RG~~le~li~~~ 34 (1034)
...++++|||||+|.+. .+..++.++.+.
T Consensus 159 ~~~~~~~iIiDEah~~~--~~~~~~~~~~~~ 187 (216)
T 3b6e_A 159 QLSDFSLIIIDECHHTN--KEAVYNNIMRHY 187 (216)
T ss_dssp CGGGCSEEEETTC---------CHHHHHHHH
T ss_pred chhcccEEEEECchhhc--cCCcHHHHHHHH
Confidence 35789999999999996 344566666554
No 313
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=62.26 E-value=7.1 Score=39.17 Aligned_cols=31 Identities=32% Similarity=0.268 Sum_probs=24.9
Q ss_pred hhHHHHHHHHhcCCCcEEEEcCCCChhhHHHH
Q psy13788 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 701 ~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~ 732 (1034)
.-|..++..+. .|.-+.+.+|.|||||+..-
T Consensus 10 ~g~~~~l~~i~-~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 10 LGQKHYVDAID-TNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp HHHHHHHHHHH-HCSEEEEECCTTSSTTHHHH
T ss_pred HhHHHHHHhcc-CCCEEEEECCCCCCHHHHHH
Confidence 34677888874 78889999999999998543
No 314
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=61.79 E-value=10 Score=48.85 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=45.9
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhC----------CCCeEEEEcCcHHHHHHHHHHHHHHhhh
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQC----------PEAKVVYIAPLKALVKERVADWKVKFEA 770 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~----------~~~~~lvi~Pt~~L~~q~~~~~~~~~~~ 770 (1034)
...+|.|+-|||||.+-..-+++.+... ...++|+|+=|++-+.++.+++.+.+..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~~ 82 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHE 82 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHHH
Confidence 3459999999999998777777877642 2368999999999999999988887765
No 315
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=61.79 E-value=4.7 Score=43.20 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=18.2
Q ss_pred cCCCcEEEEcCCCChhhHHHHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~~l 733 (1034)
..+.++++.+|||+|||.++-.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHH
Confidence 4677899999999999986543
No 316
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=61.71 E-value=5.9 Score=38.74 Aligned_cols=19 Identities=42% Similarity=0.541 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
.|..+++.+|.|||||+.+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5677899999999999943
No 317
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=61.62 E-value=13 Score=30.58 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCchhHHH
Q psy13788 504 ILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVGDK 543 (1034)
Q Consensus 504 ~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~~~g~~ 543 (1034)
.++....+-|.++|| |+.||...+.+++.++ +.+|++
T Consensus 22 ~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki---~n~G~k 59 (79)
T 3gfk_B 22 DLSVRSYNCLKRAGINTVQELANKTEEDMMKV---RNLGRK 59 (79)
T ss_dssp CCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTS---TTCHHH
T ss_pred CCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHc---CCCCHh
Confidence 678888899999999 9999999999998776 445544
No 318
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=61.53 E-value=4.1 Score=40.42 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
.+.-+++.+|||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566899999999999744
No 319
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=60.84 E-value=3.9 Score=39.56 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
+..++++++.|||||+++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45689999999999996543
No 320
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=60.63 E-value=4.3 Score=43.47 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChhhHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l 733 (1034)
.-++|.+|||||||..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3578899999999986533
No 321
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=60.59 E-value=8.4 Score=41.21 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=22.5
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
.+.-+.+.+|+|+|||+..-..+ .+....++++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La--gll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG--RYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH--HHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHH--HHHHhcCCEEEEEe
Confidence 35668899999999998543322 22222355665554
No 322
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=60.13 E-value=5.7 Score=43.15 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=18.6
Q ss_pred HHHHhcCCCcEEEEcCCCChhhH
Q psy13788 707 FHCLYHTDNNVLLGAPTGSGKTI 729 (1034)
Q Consensus 707 i~~l~~~~~~vll~apTGsGKT~ 729 (1034)
+......|..+.+.+|||||||+
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHH
T ss_pred hhhhccCCCEEEEECCCCCCHHH
Confidence 33334578899999999999998
No 323
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=59.97 E-value=10 Score=32.33 Aligned_cols=46 Identities=7% Similarity=0.117 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhh
Q psy13788 503 PILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAW 549 (1034)
Q Consensus 503 p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~ 549 (1034)
|++|+..+++|.+. + +++++.+++.++|..+=. .+..+..|..+++
T Consensus 38 pgIG~~~A~~Ll~~-fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 38 KSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp TTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHh
Confidence 99999999999764 5 899999999999987622 3456666666653
No 324
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=59.96 E-value=7.5 Score=42.20 Aligned_cols=19 Identities=53% Similarity=0.795 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChhhHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l 733 (1034)
..+++.+|+|+|||+.+-.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 6799999999999985433
No 325
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=59.88 E-value=4.5 Score=43.22 Aligned_cols=18 Identities=44% Similarity=0.481 Sum_probs=14.5
Q ss_pred cEEEEcCCCChhhHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l 733 (1034)
-++|++|||||||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 478899999999986533
No 326
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=59.86 E-value=11 Score=41.45 Aligned_cols=59 Identities=20% Similarity=0.158 Sum_probs=49.3
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCchhHHHHHHHhhcCCcceE
Q psy13788 487 TPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEI 556 (1034)
Q Consensus 487 ~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~~~g~~i~~~~~~~P~l~~ 556 (1034)
.|+..+ +|||+...++|.+.|+ |+.||+.+++..|.+.+. +..|..+...++-...-.+
T Consensus 178 lpv~~l----------~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG-~~~g~~l~~~a~G~d~~~v 237 (356)
T 4dez_A 178 RPPDAL----------WGVGPKTTKKLAAMGITTVADLAVTDPSVLTTAFG-PSTGLWLLLLAKGGGDTEV 237 (356)
T ss_dssp SCGGGS----------TTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHHHC-HHHHHHHHHHHTTCCCCCC
T ss_pred CcHHHH----------cCCchhHHHHHHHcCCCeecccccCCHHHHHHHhC-ChHHHHHHHHHcCCCcccc
Confidence 578888 9999999999999999 999999999999987654 3467788888887765444
No 327
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=59.81 E-value=5.4 Score=39.62 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCChhhHH
Q psy13788 713 TDNNVLLGAPTGSGKTIA 730 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~ 730 (1034)
.++-+++++|+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 577899999999999984
No 328
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=59.73 E-value=5.3 Score=39.61 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
.|.-+.+.+|+|||||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999854
No 329
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=59.67 E-value=8.7 Score=40.92 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=24.1
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
.++.+++.+|+|+|||+....-+... ....+.+++++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH-HHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCEEEEEe
Confidence 45678899999999998654443322 222355666554
No 330
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=59.64 E-value=5.4 Score=38.28 Aligned_cols=20 Identities=30% Similarity=0.606 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCChhhHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~ 732 (1034)
.+..+++.+|.|||||+.+-
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35679999999999998543
No 331
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=59.58 E-value=15 Score=36.80 Aligned_cols=62 Identities=6% Similarity=0.092 Sum_probs=43.5
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHHhccCCCCcccCCChHHHHHHHhhcCCHHHHHHhhhchhhhcCCCCHHHHHHhccc
Q psy13788 927 EKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMP 1006 (1034)
Q Consensus 927 ~~~~lVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~l~~~l~~gv~~~h~~~~~~~R~~ie~~ 1006 (1034)
..+++|.|+++.-+.++++.+........ +..+..++|+.+..++...
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-----------------------------~~~v~~~~g~~~~~~~~~~--- 129 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMP-----------------------------NVKVAVFFGGLSIKKDEEV--- 129 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTST-----------------------------TCCEEEESCCSCHHHHHHH---
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCC-----------------------------CceEEEEeCCCChHHHHHH---
Confidence 45899999999988888877766533210 1126788999887665432
Q ss_pred chhHhhcCCceEEEechh
Q psy13788 1007 KLAALSSKENQNVINRST 1024 (1034)
Q Consensus 1007 ~l~~f~~g~i~VLVaT~~ 1024 (1034)
+.++..+|+|+|.-
T Consensus 130 ----~~~~~~~i~v~T~~ 143 (220)
T 1t6n_A 130 ----LKKNCPHIVVGTPG 143 (220)
T ss_dssp ----HHHSCCSEEEECHH
T ss_pred ----HhcCCCCEEEeCHH
Confidence 55667789999963
No 332
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=59.48 E-value=5.2 Score=39.88 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=18.0
Q ss_pred cCCCcEEEEcCCCChhhHHHHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~~l 733 (1034)
..+.-+++++|+|||||+.+-.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHH
Confidence 3678899999999999985433
No 333
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=59.20 E-value=3.9 Score=39.18 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.2
Q ss_pred cEEEEcCCCChhhHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~ 734 (1034)
.+++.+|+|||||+.+...
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999965433
No 334
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=58.07 E-value=5 Score=41.69 Aligned_cols=18 Identities=44% Similarity=0.265 Sum_probs=14.6
Q ss_pred cEEEEcCCCChhhHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l 733 (1034)
.+++.+|||||||+.+..
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 478999999999986543
No 335
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=58.00 E-value=13 Score=49.10 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=57.7
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHHHhhhhcCCeEEEEcCCCCccccccCC
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISS 792 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 792 (1034)
.|+-+.+.+|.|||||+.++-.+.+.-++ +..++|+.+-.+|-... ++ . +|+..
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~---~~-~----~Gv~~---------------- 1483 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY---AR-K----LGVDI---------------- 1483 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH---HH-H----TTCCG----------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH---HH-H----cCCCH----------------
Confidence 34679999999999999877666554443 88999999877765542 21 1 33321
Q ss_pred CcEEEECHhhHHHHHhccccccccCcccEEEEecccccCC
Q psy13788 793 ASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832 (1034)
Q Consensus 793 ~~IiV~Tpe~l~~l~~~~~~~~~l~~l~~lViDEaH~l~~ 832 (1034)
.+++++.|+.-...+........-..+++||+|.+-.+..
T Consensus 1484 ~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 1366777744321111101111124578999999987743
No 336
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=57.03 E-value=9.6 Score=40.47 Aligned_cols=21 Identities=48% Similarity=0.591 Sum_probs=17.3
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
.+.++++.+|+|+|||..+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 357899999999999986543
No 337
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=57.00 E-value=5.1 Score=39.17 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=17.2
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
.+..+++.++.|||||+++-.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456899999999999996543
No 338
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=55.96 E-value=6.5 Score=38.46 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChhhHHH
Q psy13788 715 NNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~ 731 (1034)
+-+.+.+|+|+|||+..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999843
No 339
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=55.83 E-value=6.9 Score=37.88 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=17.6
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
.+..+++.+++|||||+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 467899999999999996554
No 340
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=55.76 E-value=6.8 Score=38.82 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
.|.-+.+.+|+|||||+.+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778899999999999854
No 341
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=55.73 E-value=2.4 Score=45.99 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=0.0
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHh
Q psy13788 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCA 548 (1034)
Q Consensus 486 ~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~ 548 (1034)
..||-+| |++++..+.+|.++|+ |+++++.+++.+|..... ++....++++.+
T Consensus 11 ~~~~~~l----------~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~ 65 (324)
T 2z43_A 11 IKTINDL----------PGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEA 65 (324)
T ss_dssp -----------------------------------------------------------------
T ss_pred CccHHHc----------CCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHH
Confidence 3478888 9999999999999999 999999999999887654 444455554444
No 342
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=55.59 E-value=8.2 Score=42.14 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=18.5
Q ss_pred HHHHHhcCCCc--EEEEcCCCChhhHHHH
Q psy13788 706 IFHCLYHTDNN--VLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 706 ai~~l~~~~~~--vll~apTGsGKT~~~~ 732 (1034)
.+..++ .|-| ++..++||||||....
T Consensus 77 lv~~~l-~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSL-DGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGG-TTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHH-CCcceeEEEeCCCCCCCceEeC
Confidence 344455 5666 6678999999998753
No 343
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=55.47 E-value=8.2 Score=41.24 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=22.6
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
.|.-+.+.+|+|+|||+..-..+ ..+.. .++++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~La-g~l~~-~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLA-HRLKN-EGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHH-HHHHH-TTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH-HHHHH-cCCeEEEEe
Confidence 45568899999999998543322 12222 255666554
No 344
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=55.22 E-value=11 Score=38.81 Aligned_cols=19 Identities=42% Similarity=0.723 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChhhHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~ 732 (1034)
.+.+++.+|+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4579999999999998554
No 345
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=54.74 E-value=6.6 Score=43.18 Aligned_cols=22 Identities=55% Similarity=0.729 Sum_probs=17.7
Q ss_pred CCCcEEEEcCCCChhhHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~ 734 (1034)
.+.++++.+|+|+|||.++-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~i 71 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETL 71 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3568999999999999966443
No 346
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=54.72 E-value=5 Score=38.77 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=16.7
Q ss_pred CCCcEEEEcCCCChhhHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~ 732 (1034)
.|.-+.+.+|+|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 56678899999999998554
No 347
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=54.68 E-value=8.1 Score=41.66 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=21.6
Q ss_pred CChhHHHHHHH--------HhcCCCc--EEEEcCCCChhhHHH
Q psy13788 699 FNPIQTQIFHC--------LYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 699 ~~~~Q~~ai~~--------l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
+..-|.+++.. ++ .|-| ++..++||||||.+.
T Consensus 54 ~~~sQ~~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 54 SSTSQEQVYNDCAKKIVKDVL-EGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp TTCCHHHHHHHHTHHHHHHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHHhhhhHHHHh-CCCeEEEEEECCCCCCCceEe
Confidence 34456665533 34 5555 777899999999864
No 348
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=54.59 E-value=6.6 Score=45.22 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=17.2
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
.+.++++.+|+|+|||..+
T Consensus 40 ~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HTCEEEEECCSSSSHHHHH
T ss_pred cCCeeEeecCchHHHHHHH
Confidence 7889999999999999854
No 349
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=54.52 E-value=8.1 Score=42.38 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=22.1
Q ss_pred CChhHHHHHHH--------HhcCCCc--EEEEcCCCChhhHHH
Q psy13788 699 FNPIQTQIFHC--------LYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 699 ~~~~Q~~ai~~--------l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
+..-|.+++.. ++ .|-| ++..++||||||.+.
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVL-AGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHh-CCCceEEEeecCCCCCCceEE
Confidence 44567666643 34 4555 677899999999864
No 350
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=54.45 E-value=11 Score=43.26 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFK 740 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~ 740 (1034)
.+.+++|.++||||||.+.-..+...+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5679999999999999876555544443
No 351
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=54.39 E-value=13 Score=39.50 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=25.9
Q ss_pred cCCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 712 HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
..|.-+++.+|+|+|||+.+...+... ....+.+++|+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~-~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW-GTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH-HHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH-HHHcCCeEEEEe
Confidence 367789999999999998655443333 222244677764
No 352
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=54.23 E-value=6.2 Score=42.48 Aligned_cols=19 Identities=37% Similarity=0.413 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChhhHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l 733 (1034)
..+++++|||||||..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3688999999999986543
No 353
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=54.22 E-value=6.9 Score=42.33 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=17.5
Q ss_pred CCCcEEEEcCCCChhhHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~ 732 (1034)
.+.++++.+|+|+|||..+.
T Consensus 45 ~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHHH
Confidence 67899999999999998554
No 354
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=54.19 E-value=7.3 Score=39.43 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=16.8
Q ss_pred cCCCcEEEEcCCCChhhHHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~ 731 (1034)
+.|.-+++.+|+|+|||+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 47888999999999999854
No 355
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.00 E-value=8.8 Score=42.76 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=18.3
Q ss_pred HHHHHhcCCCc--EEEEcCCCChhhHHH
Q psy13788 706 IFHCLYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 706 ai~~l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
.+..++ .|-| ++..++||||||.+.
T Consensus 132 lv~~~l-~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSL-DGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHH-TTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHh-CCcceEEEEECCCCCCCceEe
Confidence 444555 5655 677899999999875
No 356
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=53.62 E-value=12 Score=41.01 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=49.7
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCchhHHHHHHHhhcCCcceE
Q psy13788 487 TPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEI 556 (1034)
Q Consensus 487 ~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~~~g~~i~~~~~~~P~l~~ 556 (1034)
.|+..+ +|||+...++|.+.|+ |+.||+.++...|.+.+.. ..|..+...++-...-.+
T Consensus 178 lpv~~l----------~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG~-~~g~~l~~~a~G~d~~~v 237 (352)
T 1jx4_A 178 LDIADV----------PGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGE-AKAKYLISLARDEYNEPI 237 (352)
T ss_dssp SBGGGS----------TTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHHHCH-HHHHHHHHHHTTCCCCCC
T ss_pred CCCCcc----------cccCHHHHHHHHHcCCchHHHHHCCCHHHHHHhcCh-hHHHHHHHHhCCCCCCCc
Confidence 588888 9999999999999999 9999999999999877652 237788899888766544
No 357
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=53.53 E-value=6.6 Score=42.61 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=15.1
Q ss_pred cEEEEcCCCChhhHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l 733 (1034)
-++|++|||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 578999999999986644
No 358
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=53.37 E-value=7.7 Score=42.18 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=22.0
Q ss_pred CChhHHHHHHH--------HhcCCCc--EEEEcCCCChhhHHH
Q psy13788 699 FNPIQTQIFHC--------LYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 699 ~~~~Q~~ai~~--------l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
+..-|.+++.. ++ .|-| ++..++||||||...
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l-~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLL-EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHH-HTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCHHHHHHhhccchhhHhh-CCCceEEEEecCCCCCCCeEE
Confidence 44557766643 33 4554 677899999999864
No 359
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=53.32 E-value=8.4 Score=42.19 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.1
Q ss_pred CCCc--EEEEcCCCChhhHHH
Q psy13788 713 TDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~--vll~apTGsGKT~~~ 731 (1034)
.|-| ++..++||||||...
T Consensus 86 ~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 86 MGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp TTCEEEEEEEECTTSSHHHHH
T ss_pred CCCceEEEEeCCCCCCCceEE
Confidence 5655 677899999999854
No 360
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=53.31 E-value=9.3 Score=42.20 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=22.9
Q ss_pred CChhHHHHHHH--------HhcCCCc--EEEEcCCCChhhHHH
Q psy13788 699 FNPIQTQIFHC--------LYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 699 ~~~~Q~~ai~~--------l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
+..-|.+++.. ++ .|-| ++..++||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l-~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLL-EGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHT-TTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhh-cCceeeEeeecCCCCCCCeEe
Confidence 55568777753 33 4555 677899999999864
No 361
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=53.30 E-value=9.1 Score=41.70 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=16.8
Q ss_pred HHhcCCCc--EEEEcCCCChhhHHHH
Q psy13788 709 CLYHTDNN--VLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 709 ~l~~~~~~--vll~apTGsGKT~~~~ 732 (1034)
.++ .|-| ++..++||||||....
T Consensus 79 ~~l-~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 79 SSL-DGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp GGG-GTCCEEEEEECCTTSSHHHHHH
T ss_pred Hhc-CCceeEEEEECCCCCCCcEecc
Confidence 344 4555 6778999999998653
No 362
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=52.97 E-value=7.3 Score=41.33 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=16.7
Q ss_pred CCCcEEEEcCCCChhhHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~ 732 (1034)
.++.+++.+|+|+|||..+-
T Consensus 53 ~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 35689999999999998553
No 363
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=52.95 E-value=7.9 Score=38.34 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=17.2
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
.+..+++.+|.|||||+.+-.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467899999999999986543
No 364
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=52.92 E-value=13 Score=41.44 Aligned_cols=47 Identities=21% Similarity=0.211 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhc
Q psy13788 504 ILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWE 550 (1034)
Q Consensus 504 ~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~ 550 (1034)
||++..+++|.++|+ |+++++.+++.+|.++.. ++....++++.++.
T Consensus 90 gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~~ 138 (400)
T 3lda_A 90 GITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 138 (400)
T ss_dssp TCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 699999999999999 999999999999998876 67777788877764
No 365
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=52.89 E-value=13 Score=38.67 Aligned_cols=44 Identities=5% Similarity=0.070 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCchhHHHHHHHhhc
Q psy13788 507 PDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVGDKVKQCAWE 550 (1034)
Q Consensus 507 ~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~~~g~~i~~~~~~ 550 (1034)
.+.+..++++|+ +-++++.++++.-..++.++.+++.+.+++.+
T Consensus 2 ~~mVqw~~d~~i~~e~~~~~~~~d~~~a~l~~~~~~~~vk~~~~m 46 (267)
T 1u0j_A 2 MELVGWLVDKGITSEKQWIQEDQASYISFNAASNSRSQIKAALDN 46 (267)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCHHHHHhcCHHHHHHHhhcccchhHHHHHHHH
Confidence 456778888888 77788766666656666766677777776643
No 366
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=52.77 E-value=23 Score=29.66 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhhcC
Q psy13788 504 ILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWEI 551 (1034)
Q Consensus 504 ~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~~~ 551 (1034)
.++.....-|.++|| |+.||...+.+++.++=+ .++-.++|.+.++.+
T Consensus 18 ~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 18 ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASR 67 (86)
T ss_dssp CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHc
Confidence 688888899999999 999999999999887622 344445566666655
No 367
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=52.71 E-value=9.6 Score=37.27 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=18.7
Q ss_pred hcCCCcEEEEcCCCChhhHHHHHH
Q psy13788 711 YHTDNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 711 ~~~~~~vll~apTGsGKT~~~~l~ 734 (1034)
+..+..+++.++.|||||+.+-.-
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHH
Confidence 335678999999999999965443
No 368
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=52.63 E-value=7.6 Score=41.44 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=17.3
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
.++.+++.+|+|+|||+.+-.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHH
Confidence 456799999999999986543
No 369
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=52.55 E-value=5.9 Score=38.21 Aligned_cols=17 Identities=35% Similarity=0.290 Sum_probs=14.3
Q ss_pred cEEEEcCCCChhhHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~ 732 (1034)
.+++.++.|||||+.+.
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 47899999999998553
No 370
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=52.37 E-value=6.6 Score=37.51 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=15.1
Q ss_pred cEEEEcCCCChhhHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l 733 (1034)
.+++.+|.|||||+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999996544
No 371
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=52.34 E-value=28 Score=36.38 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhhccChHhHHHHHHhcCCCCCHHHHHHhhccccccccCcCChhhh
Q psy13788 314 TLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEEL 393 (1034)
Q Consensus 314 ~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~yl~~~t~~~~~~~l~~~~~~~~lL~ll~~s~EF~~i~~r~~E~ 393 (1034)
+.+.+|++.|...|.+.. .-.+|++|+.++.+-++|.-++.+.....-.. ...++.+++...+ .++.++..++
T Consensus 18 ~~l~~A~~~L~~LgAld~-----~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c-~~~~l~iaA~Ls~-~~~f~~p~~~ 90 (270)
T 3i4u_A 18 ETLITAMEQLYTLGALDD-----EGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGC-SEEMLTIVSMLSV-QNVFYRPKDK 90 (270)
T ss_dssp HHHHHHHHHHHHHTSBCT-----TSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTC-HHHHHHHHHHHTS-SCCBCCCGGG
T ss_pred HHHHHHHHHHHHcCCcCC-----CCCccHHHHHHHhCCCCHHHHHHHHHhhhcCC-HHHHHHHHHHHCC-CccccCCchh
Confidence 567899999999999942 23699999999999999999998887654332 2344544443332 4455555554
Q ss_pred H
Q psy13788 394 H 394 (1034)
Q Consensus 394 ~ 394 (1034)
.
T Consensus 91 ~ 91 (270)
T 3i4u_A 91 Q 91 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 372
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=52.28 E-value=8.3 Score=42.38 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=22.0
Q ss_pred CChhHHHHHHH--------HhcCCCc--EEEEcCCCChhhHHH
Q psy13788 699 FNPIQTQIFHC--------LYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 699 ~~~~Q~~ai~~--------l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
+..-|.+++.. ++ .|-| ++..++||||||...
T Consensus 78 ~~~~Q~~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 78 WNAKQFELYDETFRPLVDSVL-QGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TTCCHHHHHHHTHHHHHHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHh-CCCeeeEEeecCCCCCCCEeE
Confidence 44557666643 34 4555 677899999999864
No 373
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=52.25 E-value=11 Score=38.33 Aligned_cols=41 Identities=20% Similarity=0.073 Sum_probs=31.0
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKA 755 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~ 755 (1034)
.+.-.++.+|-|+|||+..+--+.+... .+.+++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~--~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT--TTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEeecCC
Confidence 3555777888899999977766666643 3789999998863
No 374
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=52.25 E-value=5.5 Score=38.81 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=17.4
Q ss_pred CCCcEEEEcCCCChhhHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~ 734 (1034)
.+..+++.++.|||||+.+-.-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4557899999999999965443
No 375
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=52.22 E-value=6.5 Score=38.33 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
+..+++.++.|||||+.+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999986544
No 376
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=51.96 E-value=8.5 Score=42.82 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=16.8
Q ss_pred HHhcCCCc--EEEEcCCCChhhHHHH
Q psy13788 709 CLYHTDNN--VLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 709 ~l~~~~~~--vll~apTGsGKT~~~~ 732 (1034)
.++ .|-| ++..++||||||.+..
T Consensus 149 ~~l-~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 149 TIF-EGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHH-TTCEEEEEEEESTTSSHHHHHH
T ss_pred HHh-cCCceeEEeecCCCCCCCeEee
Confidence 344 5555 6778999999998653
No 377
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=51.93 E-value=8.5 Score=38.82 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=16.6
Q ss_pred cCCCcEEEEcCCCChhhHHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~ 731 (1034)
..|+-+.+.+|+|+|||+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 36788999999999999843
No 378
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=51.92 E-value=9.5 Score=41.54 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=21.6
Q ss_pred CChhHHHHHHH--------HhcCCCc--EEEEcCCCChhhHHH
Q psy13788 699 FNPIQTQIFHC--------LYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 699 ~~~~Q~~ai~~--------l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
+..-|.+++.. ++ .|.| ++..++||||||...
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFF-EGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHH-hhcCeeEEEecccCCCceEee
Confidence 44456666543 34 4555 677899999999864
No 379
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=51.81 E-value=8.7 Score=41.86 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=21.3
Q ss_pred CChhHHHHHHH--------HhcCCCc--EEEEcCCCChhhHHH
Q psy13788 699 FNPIQTQIFHC--------LYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 699 ~~~~Q~~ai~~--------l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
+..-|.+++.. ++ .|-| ++..++||||||...
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVL-EGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHh-CCCceeEEeecCCCCCCCEEe
Confidence 34456665533 34 4555 777899999999864
No 380
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=51.67 E-value=14 Score=35.79 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=22.7
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEE
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYI 750 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi 750 (1034)
.+..+++.++.|||||+.+-...- .+.. .+..+.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~-~l~~-~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD-LLQK-EGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH-HHHH-TTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH-HHHh-cCCeEEEe
Confidence 455688999999999986654332 2222 24455554
No 381
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=51.59 E-value=11 Score=30.55 Aligned_cols=45 Identities=9% Similarity=0.262 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHh
Q psy13788 503 PILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCA 548 (1034)
Q Consensus 503 p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~ 548 (1034)
|++++..+++|.+. + +++++.++++++|..+-. .+..+..|...+
T Consensus 20 ~giG~~~a~~Ll~~-fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 20 PHVSATLARRLLKH-FGSVERVFTASVAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp TTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999874 6 899999999999876622 344555555544
No 382
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=51.59 E-value=9.1 Score=41.88 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=15.4
Q ss_pred CCCc--EEEEcCCCChhhHHH
Q psy13788 713 TDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~--vll~apTGsGKT~~~ 731 (1034)
.|.+ ++..++||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4665 688999999999865
No 383
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=51.55 E-value=7.6 Score=38.48 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=17.7
Q ss_pred cCCCcEEEEcCCCChhhHHHHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~~l 733 (1034)
+.+..+.+.+|.|||||+.+-.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3567788999999999986544
No 384
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=51.48 E-value=6.1 Score=38.08 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=16.7
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
.+..+++.+|.|||||+.+-.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 355788999999999986543
No 385
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=51.45 E-value=9.7 Score=41.59 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=21.5
Q ss_pred CChhHHHHHH--------HHhcCCCc--EEEEcCCCChhhHHH
Q psy13788 699 FNPIQTQIFH--------CLYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 699 ~~~~Q~~ai~--------~l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
+..-|.+++. .++ .|-| ++..++||||||...
T Consensus 57 ~~~~Q~~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 57 MSCKQSDIFDFSIKPTVDDIL-NGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TTCCHHHHHHHHTHHHHHHHT-TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHh-CCCcceEEEECCCCCCcceEe
Confidence 3445666664 234 4555 777899999999864
No 386
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=51.41 E-value=16 Score=41.84 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=47.9
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCchhHHHHHHHhhcCCcc
Q psy13788 487 TPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLL 554 (1034)
Q Consensus 487 ~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~~~g~~i~~~~~~~P~l 554 (1034)
.|+..| +||++...++|.+.|+ |+.||+.+++..|...+. +..|..+...++-+..-
T Consensus 315 LPV~~l----------~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~fG-~~~g~~L~~~a~GiD~~ 372 (504)
T 3gqc_A 315 QLVTNL----------PGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFG-PKTGQMLYRFCRGLDDR 372 (504)
T ss_dssp SBGGGS----------TTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHHC-HHHHHHHHHHTTTCCCC
T ss_pred CChhHh----------hCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHhhC-hhHHHHHHHHhcCCCcc
Confidence 588888 9999999999999999 999999999999987764 23577888877766543
No 387
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=51.24 E-value=8.7 Score=41.88 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=15.0
Q ss_pred CCCc--EEEEcCCCChhhHHH
Q psy13788 713 TDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~--vll~apTGsGKT~~~ 731 (1034)
.|-| ++..++||||||...
T Consensus 75 ~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 75 QGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred cCCccceeeecCCCCCCCeEE
Confidence 4555 777899999999864
No 388
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=51.21 E-value=11 Score=48.75 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=30.6
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHhCC-CCeEEEEcCcHH
Q psy13788 717 VLLGAPTGSGKTIAAEITCFRVFKQCP-EAKVVYIAPLKA 755 (1034)
Q Consensus 717 vll~apTGsGKT~~~~l~il~~l~~~~-~~~~lvi~Pt~~ 755 (1034)
-+|.|+.|||||.+..--+...+.+++ +.+++++||...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc
Confidence 368889999999988777766666554 479999999874
No 389
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=51.19 E-value=6.2 Score=42.96 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.7
Q ss_pred CCCcEEEEcCCCChhhHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~ 732 (1034)
...++++.+|+|+|||..+.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHH
T ss_pred CCceEEEECCCCccHHHHHH
Confidence 45679999999999998654
No 390
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=51.15 E-value=15 Score=41.31 Aligned_cols=58 Identities=17% Similarity=0.285 Sum_probs=47.8
Q ss_pred cccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCchhHHHHHHHhhcCCcceE
Q psy13788 488 PLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEI 556 (1034)
Q Consensus 488 ~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~~~g~~i~~~~~~~P~l~~ 556 (1034)
|+..+ +|||+...++|.+.|+ |+.||+.+++..|.+.+. ...|..+.+.++-...-.+
T Consensus 235 pv~~l----------~GIG~~t~~~L~~lGI~TigdLa~~~~~~L~~~fG-~~~g~~L~~~a~G~d~~~V 293 (420)
T 3osn_A 235 HIKEI----------PGIGYKTAKCLEALGINSVRDLQTFSPKILEKELG-ISVAQRIQKLSFGEDNSPV 293 (420)
T ss_dssp SGGGS----------TTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHH-HHHHHHHHHHHTTCCCCCC
T ss_pred cHHHc----------cCCCHHHHHHHHHhCCCcHHHHhhCCHHHHHHHhC-chHHHHHHHHhcCCCcccc
Confidence 47788 9999999999999999 999999999999987664 2357788888877655444
No 391
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=50.81 E-value=10 Score=40.44 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=17.4
Q ss_pred cCCCcEEEEcCCCChhhHHHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~~ 732 (1034)
..|.-+.+.+|+|||||+..-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 477889999999999998543
No 392
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=50.61 E-value=15 Score=38.44 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=27.0
Q ss_pred cCCCcEEEEcCCCChhhHHHHHHHHHHHHhC---------CCCeEEEEcC
Q psy13788 712 HTDNNVLLGAPTGSGKTIAAEITCFRVFKQC---------PEAKVVYIAP 752 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~~l~il~~l~~~---------~~~~~lvi~P 752 (1034)
..|.-+++.+|+|+|||+.+...+.. +... .+.+++|+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~-~~~g~~~~g~~~~~~~~v~~~~~ 76 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQ-IAGGPDLLEVGELPTGPVIYLPA 76 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH-HHTCCCTTCCCCCCCCCEEEEES
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH-HhcCCCcCCCccCCCccEEEEEC
Confidence 36788999999999999876554432 2321 1356777763
No 393
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=50.22 E-value=14 Score=39.68 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=22.8
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
.++-+.+.+|+|+|||+....-+.. +.. .+.+++++-
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~-l~~-~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY-YAE-LGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH-HHH-TTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHH-CCCeEEEEe
Confidence 3456788899999999765443322 222 256666653
No 394
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=50.09 E-value=11 Score=41.31 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=22.6
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
.+.-+.+.+|+|+|||+..-..+ ..+.. .++++++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~La-g~l~~-~~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLA-HRLKN-EGTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHH-HHHHH-TTCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHH-hhccc-cCCEEEEec
Confidence 45568899999999998543322 22222 245665554
No 395
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=50.01 E-value=9.8 Score=41.50 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred hcCCCcEEEEcCCCChhhHHHHHHHHHHHHhC----CCCeEEEE
Q psy13788 711 YHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC----PEAKVVYI 750 (1034)
Q Consensus 711 ~~~~~~vll~apTGsGKT~~~~l~il~~l~~~----~~~~~lvi 750 (1034)
+..|.-+++.+|+|+|||..+.-.+....... .+.+++|+
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi 162 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 162 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEE
No 396
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=49.89 E-value=9.1 Score=41.86 Aligned_cols=19 Identities=42% Similarity=0.461 Sum_probs=15.1
Q ss_pred CCCc--EEEEcCCCChhhHHH
Q psy13788 713 TDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~--vll~apTGsGKT~~~ 731 (1034)
.|.| ++..++||||||...
T Consensus 103 ~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 103 NGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCEEEEEECCTTSSHHHHH
T ss_pred CCCceEEEEeCCCCCCceeee
Confidence 4555 677899999999864
No 397
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=49.80 E-value=11 Score=40.66 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
.+.-+.+.+|+|+|||+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556889999999999754
No 398
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=49.78 E-value=9.7 Score=41.93 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=21.6
Q ss_pred CChhHHHHHHH--------HhcCCCc--EEEEcCCCChhhHHH
Q psy13788 699 FNPIQTQIFHC--------LYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 699 ~~~~Q~~ai~~--------l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
+..-|.+++.. ++ .|-| ++..++||||||...
T Consensus 77 ~~~~Q~~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 77 PESKQCDVYSVVVSPLIEEVL-NGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH-HTCCEEEEEECSTTSSHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHh-CCceEEEEeecCCCCCcceec
Confidence 44457666643 34 4554 777899999999854
No 399
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=49.72 E-value=14 Score=40.50 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=50.3
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCchhHHHHHHHhhcCCcceEE
Q psy13788 487 TPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIE 557 (1034)
Q Consensus 487 ~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~~~g~~i~~~~~~~P~l~~~ 557 (1034)
.|+..+ +|+|+...++|.+.|+ |+.||+.++...|.+.+.. ..|..+.+.++-...-.++
T Consensus 179 lpv~~l----------~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG~-~~g~~l~~~a~G~d~~~v~ 239 (354)
T 3bq0_A 179 LDIDEI----------PGIGSVLARRLNELGIQKLRDILSKNYNELEKITGK-AKALYLLKLAQNKYSEPVE 239 (354)
T ss_dssp CBSTTS----------TTCCHHHHHHHTTTTCCBGGGGGGSCHHHHHHHHCH-HHHHHHHHHHTTCCCCCCC
T ss_pred CCcccc----------cCcCHHHHHHHHHcCCccHHHHhcCCHHHHHHHHCH-HHHHHHHHHhCCCCCCCCc
Confidence 477888 9999999999999999 9999999999999887652 2378899999888765554
No 400
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=49.62 E-value=8.8 Score=42.58 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.1
Q ss_pred cEEEEcCCCChhhHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~ 734 (1034)
-++|.+|||+|||..+...
T Consensus 4 ~i~i~GptgsGKttla~~L 22 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQL 22 (409)
T ss_dssp EEEEEECSSSSHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHH
Confidence 4788999999999865443
No 401
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=49.34 E-value=9.9 Score=41.95 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=17.0
Q ss_pred HHhcCCCc--EEEEcCCCChhhHHHH
Q psy13788 709 CLYHTDNN--VLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 709 ~l~~~~~~--vll~apTGsGKT~~~~ 732 (1034)
.++ .|.| ++..++||||||.+..
T Consensus 129 ~~l-~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 129 TIF-EGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHH-TTCEEEEEEESCTTSSHHHHHC
T ss_pred HHh-cCCceEEEEecCCCCCCCeEec
Confidence 344 5555 7778999999998753
No 402
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=49.18 E-value=19 Score=30.41 Aligned_cols=46 Identities=7% Similarity=0.117 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHhh
Q psy13788 503 PILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAW 549 (1034)
Q Consensus 503 p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~~ 549 (1034)
|++|+..+++|.+. + +++++.+++.++|..+-. .+..+..+..+++
T Consensus 25 pgIG~~~A~~Ll~~-fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 25 KSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp SSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999875 5 899999999999987622 3455666666554
No 403
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=49.09 E-value=8.4 Score=42.26 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=16.7
Q ss_pred CcEEEEcCCCChhhHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~ 734 (1034)
+.+++.+|+|+|||..+...
T Consensus 71 ~~vLl~GppGtGKT~la~~l 90 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGM 90 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47999999999999866543
No 404
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=48.85 E-value=9.3 Score=42.19 Aligned_cols=20 Identities=55% Similarity=0.818 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
..++++.+|+|+|||.++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 56899999999999986543
No 405
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=48.74 E-value=11 Score=41.22 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=17.0
Q ss_pred HHHhcCCCc--EEEEcCCCChhhHHH
Q psy13788 708 HCLYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 708 ~~l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
..++ .|.| ++..++||||||.+.
T Consensus 73 ~~~l-~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 73 QSAV-DGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHH-TTCEEEEEEEECTTSSHHHHH
T ss_pred Hhhh-cCCceEEEEECCCCCCCeEee
Confidence 4445 5665 667899999999864
No 406
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=48.54 E-value=11 Score=41.34 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=21.1
Q ss_pred CChhHHHHHH-------HHhcCCCc--EEEEcCCCChhhHHH
Q psy13788 699 FNPIQTQIFH-------CLYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 699 ~~~~Q~~ai~-------~l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
+..-|.+++. .++ .|-| ++..++||||||...
T Consensus 93 ~~~~Q~~Vy~~v~~lv~~~l-~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 93 PGSGQDEVFEEIAMLVQSAL-DGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp TTCCHHHHHHHHHHHHHGGG-GTCCEEEEEECSTTSSHHHHH
T ss_pred CcccchhhhhhHHHHHHHhc-CCCceEEEEeCCCCCCCceEe
Confidence 3445655553 334 4555 677899999999864
No 407
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.34 E-value=12 Score=41.64 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=18.5
Q ss_pred HHHHHhcCCCc--EEEEcCCCChhhHHH
Q psy13788 706 IFHCLYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 706 ai~~l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
.+..++ .|-| ++..++||||||.+.
T Consensus 130 lv~~~l-~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSAL-DGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHH-CCCceEEEEecCCCCCCeeEe
Confidence 455566 5555 677899999999864
No 408
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=47.84 E-value=6.9 Score=38.26 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=16.7
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
.+..+++.++.|||||+.+-.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345688999999999996544
No 409
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=47.69 E-value=11 Score=37.57 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
.|+-+.+.+|+|||||+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 7888999999999999843
No 410
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=47.62 E-value=9.1 Score=38.19 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
.+.-+.|.+|+|||||+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556789999999999843
No 411
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=47.10 E-value=15 Score=35.83 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=23.4
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHH
Q psy13788 717 VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKA 755 (1034)
Q Consensus 717 vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~ 755 (1034)
++|.+++|||||.-+.-. ... +.+++|++....
T Consensus 2 ilV~Gg~~SGKS~~A~~l-----a~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEAL-----IGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHH-----HCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHH-----Hhc-CCCeEEEecCCC
Confidence 688999999999854432 222 567899987544
No 412
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=47.09 E-value=8.1 Score=39.28 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=12.6
Q ss_pred cCCCcEEEEcCCCChhhHHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~ 731 (1034)
..|.-+.+.+|+|||||+..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 36777889999999999853
No 413
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=47.03 E-value=11 Score=37.21 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCChhhHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~ 732 (1034)
.+..+++.++.|||||+.+-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46679999999999999654
No 414
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=46.81 E-value=23 Score=34.24 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=23.4
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEcCcHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALV 757 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~Pt~~L~ 757 (1034)
.+++.++.|||||+.+....- .+.. .+..+.++ |+-++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~-~l~~-~g~~~~~~-~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE-ILDN-QGINNKII-NYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH-HHHT-TTCCEEEE-EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHh-cCceEEEE-ECChHH
Confidence 478999999999986654322 2222 23445555 654444
No 415
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=46.77 E-value=11 Score=40.59 Aligned_cols=41 Identities=27% Similarity=0.156 Sum_probs=27.7
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHh----CCCCeEEEEcCc
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQ----CPEAKVVYIAPL 753 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~----~~~~~~lvi~Pt 753 (1034)
.|.-+++.+|+|+|||..+.-.+...... ..+.+++|+.--
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 56779999999999998665544432211 015688888754
No 416
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=46.55 E-value=8.2 Score=38.22 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
...++++++.|||||+.+-.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34699999999999996544
No 417
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=46.52 E-value=9.2 Score=37.55 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=17.5
Q ss_pred CCCcEEEEcCCCChhhHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~ 734 (1034)
.+..+++.++.|||||+.+-..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4567999999999999965443
No 418
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=46.35 E-value=8.2 Score=39.14 Aligned_cols=36 Identities=14% Similarity=0.338 Sum_probs=24.3
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHH
Q psy13788 487 TPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEIS 532 (1034)
Q Consensus 487 ~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~ 532 (1034)
.|+..+ +++++...++|.+.|+ |+.||+.++...|.
T Consensus 184 lpv~~l----------~giG~~~~~~L~~~Gi~TigdL~~~~~~~L~ 220 (221)
T 1im4_A 184 LDIDEI----------PGIGSVLARRLNELGIQKLRDILSKNYNELE 220 (221)
T ss_dssp CBGGGS----------TTCCHHHHHHHHHTTCCBTTC----------
T ss_pred CCcccc----------cCCCHHHHHHHHHcCCCcHHHHHCCCHHHhh
Confidence 578888 9999999999999999 99999999987764
No 419
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=46.32 E-value=7.7 Score=41.11 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChhhHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~ 732 (1034)
.-+++++|.|||||+.+-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999998654
No 420
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=46.18 E-value=15 Score=40.28 Aligned_cols=59 Identities=12% Similarity=0.114 Sum_probs=49.5
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhcCchhHHHHHHHhhcCCcceE
Q psy13788 487 TPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEI 556 (1034)
Q Consensus 487 ~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~~~~~g~~i~~~~~~~P~l~~ 556 (1034)
.|+..+ +|+++...++|.+.|+ |+.||+.+++..|.+.+. +..|..+...++-...-.+
T Consensus 179 lpv~~l----------~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG-~~~g~~l~~~a~G~d~~~v 238 (362)
T 4f4y_A 179 LDIDEI----------PGIGSVLARRLNELGIQKLRDILSKNYNELEKITG-KAKALYLLKLAQDEYNEPI 238 (362)
T ss_dssp CBSTTS----------TTCCSTTHHHHHHTTCCBGGGGTTSCHHHHHHHHC-HHHHHHHHHHHTTCCCCCC
T ss_pred CChhhc----------cCCCHHHHHHHHHcCCChHHHHhcCCHHHHHHHhC-hHHHHHHHHHhcCCCCCcC
Confidence 577888 9999999999999999 999999999999987664 3467888888887765544
No 421
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=46.03 E-value=11 Score=36.17 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.3
Q ss_pred cEEEEcCCCChhhHHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITC 735 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~i 735 (1034)
.+++.+|.|||||+++....
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999665443
No 422
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=45.83 E-value=40 Score=37.09 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=24.1
Q ss_pred hHHHHHHHHh--cCCCcEEEEcCCCChhhHHHHH
Q psy13788 702 IQTQIFHCLY--HTDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 702 ~Q~~ai~~l~--~~~~~vll~apTGsGKT~~~~l 733 (1034)
.=..++..++ ..|..+.+.+|+|+|||.....
T Consensus 160 tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 160 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp HHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred ccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 3445666654 3688999999999999987654
No 423
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=45.52 E-value=10 Score=36.07 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=17.3
Q ss_pred CcEEEEcCCCChhhHHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEITC 735 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~i 735 (1034)
.++++.++.|||||+++-.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 579999999999999765543
No 424
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=45.24 E-value=10 Score=37.79 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
.+.-+.+.+|+|||||+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3456789999999999854
No 425
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=45.20 E-value=11 Score=39.04 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=17.5
Q ss_pred cCCCcEEEEcCCCChhhHHHHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~~~l 733 (1034)
..+..+.+.+|+|||||+++-+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3566789999999999995443
No 426
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=44.94 E-value=12 Score=37.54 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChhhHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~ 734 (1034)
+..+.+.+|+|||||+++-+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 346889999999999865443
No 427
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=44.46 E-value=9.3 Score=37.28 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChhhHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l 733 (1034)
.-+++.+|+|||||+.+-.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3578899999999985443
No 428
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=44.45 E-value=10 Score=37.87 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=15.5
Q ss_pred cEEEEcCCCChhhHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~ 734 (1034)
.+++.+|.|||||+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999966543
No 429
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=44.44 E-value=8.7 Score=37.47 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
+..+++.+++|||||+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34688999999999997644
No 430
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=44.43 E-value=12 Score=36.35 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=16.2
Q ss_pred CcEEEEcCCCChhhHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~ 734 (1034)
..+++.++.|||||+++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45899999999999976443
No 431
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=44.30 E-value=15 Score=41.91 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEE
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYI 750 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi 750 (1034)
|.-+.+.+|+|+|||+..-..+ ..+.. .++++++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LA-gll~~-~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLA-RQFEQ-QGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHH-HHHHH-TTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHH-HHhhh-cCCeEEEe
Confidence 4457899999999998543322 22222 35666665
No 432
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=44.15 E-value=14 Score=36.78 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=14.2
Q ss_pred cEEEEcCCCChhhHHH
Q psy13788 716 NVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~ 731 (1034)
.+++.+|.|+|||..+
T Consensus 60 ~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 60 CLVFCGPANTGKSYFG 75 (212)
T ss_dssp EEEEESCGGGCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999865
No 433
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=44.00 E-value=24 Score=33.89 Aligned_cols=34 Identities=18% Similarity=-0.032 Sum_probs=20.0
Q ss_pred cEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
-+.+.+++|||||+.... ++..+.. .+.++-++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~-L~~~l~~-~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEK-WVAAAVR-EGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHHH-TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHH-HHHhhHh-cCCeeeEEE
Confidence 477889999999985433 3333333 244444443
No 434
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=43.87 E-value=9.1 Score=40.79 Aligned_cols=19 Identities=42% Similarity=0.538 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChhhHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l 733 (1034)
.++++.+|+|+|||.++-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 4799999999999986653
No 435
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=43.80 E-value=12 Score=38.44 Aligned_cols=18 Identities=50% Similarity=0.645 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChhhHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~ 732 (1034)
+.+++.+|+|+|||+.+-
T Consensus 50 ~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999998543
No 436
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=43.64 E-value=16 Score=39.26 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=13.0
Q ss_pred cEEEEcCCCChhhHH
Q psy13788 716 NVLLGAPTGSGKTIA 730 (1034)
Q Consensus 716 ~vll~apTGsGKT~~ 730 (1034)
-+++.++.|||||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 478899999999983
No 437
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=43.55 E-value=14 Score=37.19 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=17.5
Q ss_pred CCCcEEEEcCCCChhhHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~ 734 (1034)
.+..+++.++.|||||+.+-.-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999966543
No 438
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=43.48 E-value=11 Score=37.72 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.0
Q ss_pred cEEEEcCCCChhhHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l 733 (1034)
.+++.+|.|||||+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999996544
No 439
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=43.10 E-value=5.1 Score=40.52 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCcccccccccccCCCCCCCCHHHHHHHHhcCC-CHHHHhcCCHHHHHhhhc-CchhHHHHHHHh
Q psy13788 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCA 548 (1034)
Q Consensus 486 ~~~L~ql~~~~~~~~~~p~i~~~~~~~L~~~g~-t~~~l~~~~~~el~~~l~-~~~~g~~i~~~~ 548 (1034)
.++|..+ ||||+.++++|.+. + |++.+.+++.+||..+ . ++..++.|++++
T Consensus 172 ~s~L~~I----------pGIG~k~ak~Ll~~-FGSl~~i~~As~eeL~~V-GIG~~~A~~I~~~f 224 (226)
T 3c65_A 172 HSVLDDI----------PGVGEKRKKALLNY-FGSVKKMKEATVEELQRA-NIPRAVAEKIYEKL 224 (226)
T ss_dssp -----------------------------------------------------------------
T ss_pred ccccccc----------CCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHHc-CCCHHHHHHHHHHh
Confidence 4678888 99999999999875 6 9999999999999887 5 455666665544
No 440
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=43.02 E-value=9.9 Score=36.73 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=16.7
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
.|..+++.++.|||||+++-.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456788999999999986543
No 441
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=42.97 E-value=17 Score=40.83 Aligned_cols=35 Identities=37% Similarity=0.325 Sum_probs=23.0
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
..+++++++|+|||+.+.--+.....+ +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 368899999999997654443333222 56666665
No 442
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=42.85 E-value=12 Score=42.50 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCChhhHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~ 734 (1034)
++++++.+|+|+|||..+...
T Consensus 63 ~~~iLl~GppGtGKT~la~al 83 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAI 83 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHH
Confidence 357999999999999876543
No 443
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=42.66 E-value=7.6 Score=40.44 Aligned_cols=20 Identities=45% Similarity=0.694 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
.+.+++.+|+|+|||..+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~ 63 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKA 63 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 45699999999999986543
No 444
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=42.55 E-value=12 Score=37.14 Aligned_cols=19 Identities=32% Similarity=0.226 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCChhhHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~ 731 (1034)
.+.-+.+.+++|||||+.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556889999999999844
No 445
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=42.45 E-value=12 Score=36.90 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCChhhHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~ 734 (1034)
+..+++.++.|||||+.+-..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 346899999999999965443
No 446
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=42.43 E-value=14 Score=41.22 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=26.1
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHh----CCCCeEEEEcC
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQ----CPEAKVVYIAP 752 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~----~~~~~~lvi~P 752 (1034)
.|.-+.+.+|+|+|||..+...++..... ..+.+++|+.-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 45679999999999998665333332221 12467888864
No 447
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=42.35 E-value=23 Score=41.18 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=22.6
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHHHHh
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFRVFKQ 741 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~~l~~ 741 (1034)
...+++|.+.||||||.+.-..++..+..
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35789999999999999766666665544
No 448
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=42.22 E-value=13 Score=35.53 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChhhHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~ 734 (1034)
..+++.++.|||||+++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35889999999999966443
No 449
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=42.18 E-value=32 Score=38.45 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=27.3
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc--CcHHHHHHHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA--PLKALVKERVADW 764 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~--Pt~~L~~q~~~~~ 764 (1034)
..+.+.+++|+|||+.....+.. +.. .+.+++++. +.+..+.++...+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~-l~~-~g~~Vllvd~D~~r~aa~~qL~~~ 148 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALY-YKG-KGRRPLLVAADTQRPAAREQLRLL 148 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-HHT-TTCCEEEEECCSSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHH-cCCeEEEeeccccCchhHHHHHHh
Confidence 34777899999999865443322 222 356666654 4444444334433
No 450
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=42.01 E-value=15 Score=38.03 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCChhhHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~ 734 (1034)
+..+++.++.|||||+++-+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 889999999999999965443
No 451
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=42.00 E-value=12 Score=38.23 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=16.2
Q ss_pred cCCCcEEEEcCCCChhhH
Q psy13788 712 HTDNNVLLGAPTGSGKTI 729 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~ 729 (1034)
..|.-+.+.+|+|||||+
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 377889999999999998
No 452
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=41.88 E-value=14 Score=37.42 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCChhhHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~ 732 (1034)
.+..+++.+++|||||+.+-
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 34679999999999999653
No 453
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=41.55 E-value=31 Score=36.72 Aligned_cols=20 Identities=15% Similarity=0.224 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCChhhHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~ 732 (1034)
.+.-+.+.+|+|||||+.+-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 34457789999999998543
No 454
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=41.40 E-value=15 Score=34.41 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.0
Q ss_pred CcEEEEcCCCChhhHHH
Q psy13788 715 NNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~ 731 (1034)
.-.++.+|+|+|||.+.
T Consensus 24 g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35788999999999863
No 455
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=41.30 E-value=12 Score=37.17 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=18.0
Q ss_pred CCCcEEEEcCCCChhhHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~ 734 (1034)
.+..+++.++.|||||+.+-..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5667999999999999976543
No 456
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=41.22 E-value=15 Score=35.69 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.6
Q ss_pred cEEEEcCCCChhhHHH
Q psy13788 716 NVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~ 731 (1034)
.+.+.+|.|+|||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 457
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=40.84 E-value=17 Score=36.41 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCChhhHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~ 734 (1034)
...+++.+|.|||||+.+-..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457999999999999966543
No 458
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=40.42 E-value=15 Score=35.54 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.2
Q ss_pred cEEEEcCCCChhhHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~ 732 (1034)
-.++.+|+|+|||....
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 67899999999998543
No 459
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=40.40 E-value=16 Score=39.34 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=19.1
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITCFR 737 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~il~ 737 (1034)
.|.-+++.+|+|+|||..+.-.+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999866555443
No 460
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=40.31 E-value=18 Score=39.58 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=16.8
Q ss_pred HHHhcCCCc--EEEEcCCCChhhHHH
Q psy13788 708 HCLYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 708 ~~l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
..++ .|-| ++..++||||||...
T Consensus 98 ~~~l-~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 98 SQAL-DGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHh-CCCCEEEEEeCCCCCCccEEe
Confidence 3345 5555 777899999999864
No 461
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=40.25 E-value=28 Score=39.17 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=47.9
Q ss_pred CcccccccccccCCCCCCCCHHHHHHHHh--cCC-CHHHHhcC-CHHHHHhhhcCchhHHHHHHHhhcCCcc
Q psy13788 487 TPLRQIKLVTNRGYQSPILKPDILNKIEQ--RGL-TVEDLREM-PAKEISYMLRDPHVGDKVKQCAWEIPLL 554 (1034)
Q Consensus 487 ~~L~ql~~~~~~~~~~p~i~~~~~~~L~~--~g~-t~~~l~~~-~~~el~~~l~~~~~g~~i~~~~~~~P~l 554 (1034)
.|+..+ +|||+...++|.+ .|+ |+.||+.+ +...|.+.+.. ..|..+...++-...-
T Consensus 241 lpv~~l----------~GiG~~~~~~L~~~~~GI~ti~dL~~~~~~~~L~~~fG~-~~g~~l~~~a~G~d~~ 301 (434)
T 2aq4_A 241 FKLDDL----------PGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGS-KLGMKIHLALQGQDDE 301 (434)
T ss_dssp CCGGGS----------TTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHHHHCS-SHHHHHHHHTTTCCCH
T ss_pred CCcccc----------cCcCHHHHHHHHHhcCCceEHHHHHhcCCHHHHHHHhCH-HHHHHHHHHhcCCCcc
Confidence 688888 9999999999999 899 99999999 99999877652 3677888888776543
No 462
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=40.17 E-value=13 Score=37.32 Aligned_cols=21 Identities=33% Similarity=0.194 Sum_probs=17.0
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
.|.-+.+.+|+|+|||+....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 566789999999999985443
No 463
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=39.89 E-value=17 Score=39.98 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=15.9
Q ss_pred cEEEEcCCCChhhHHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEITC 735 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~i 735 (1034)
-.++.+|||+|||..+....
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57799999999998764433
No 464
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=39.81 E-value=14 Score=35.79 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=15.4
Q ss_pred cEEEEcCCCChhhHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~ 734 (1034)
.+++.++.|||||+++...
T Consensus 8 ~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999965443
No 465
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=39.41 E-value=17 Score=37.26 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCChhhHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l 733 (1034)
.+..+++.+|.|||||+.+-.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356799999999999985433
No 466
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=39.27 E-value=19 Score=37.68 Aligned_cols=17 Identities=53% Similarity=0.847 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChhhHHH
Q psy13788 715 NNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~ 731 (1034)
+.+++.+|+|+|||+.+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 44999999999999843
No 467
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=39.22 E-value=80 Score=29.31 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhcCceEEecCCCCcccChHHHHHHhh
Q psy13788 314 TLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNY 350 (1034)
Q Consensus 314 ~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~s~~ 350 (1034)
..+..+++.|++.|+|.... +..+.+|+.|+.....
T Consensus 69 ~tvs~~l~~Le~~Glv~r~~-~~~~~lT~~g~~~~~~ 104 (155)
T 2h09_A 69 PTVAKMLKRLATMGLIEMIP-WRGVFLTAEGEKLAQE 104 (155)
T ss_dssp HHHHHHHHHHHHTTCEEEET-TTEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEec-CCceEEChhHHHHHHH
Confidence 45678899999999998764 5679999999876443
No 468
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=39.20 E-value=17 Score=35.63 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
|..+.+.+|+|+|||+..-.
T Consensus 1 G~~i~i~G~nG~GKTTll~~ 20 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHK 20 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHH
Confidence 35688999999999985443
No 469
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=39.15 E-value=16 Score=38.19 Aligned_cols=18 Identities=50% Similarity=0.645 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChhhHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~ 732 (1034)
+.+++.+|+|+|||+.+-
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 359999999999998543
No 470
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=39.12 E-value=28 Score=29.75 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhcCceEEecCCCCcccChHHHHH
Q psy13788 314 TLIENAAQILDKAHMIRFNMRTRDLAITDLGRTA 347 (1034)
Q Consensus 314 ~~~~~~l~~L~~~~~i~~~~~~~~~~~T~lG~~~ 347 (1034)
..+...++.|.+.|+|... .+.+..|+.|+-.
T Consensus 35 ~~~~~~l~~L~~~GLI~~~--~~~~~LT~kG~~~ 66 (95)
T 1r7j_A 35 ALTGRYIKMLMDLEIIRQE--GKQYMLTKKGEEL 66 (95)
T ss_dssp HHHHHHHHHHHHTTSEEEE--TTEEEECHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEE--CCeeEEChhHHHH
Confidence 3466778999999999988 5679999999954
No 471
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=39.02 E-value=27 Score=36.98 Aligned_cols=36 Identities=28% Similarity=0.251 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHhCCCCeEEEEc
Q psy13788 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~il~~l~~~~~~~~lvi~ 751 (1034)
++-+.+.+++|+|||+.+..-+... .. .+.+++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~-~~-~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY-KG-KGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH-HH-TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HH-cCCeEEEec
Confidence 4457778999999997654433222 22 255666554
No 472
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=39.00 E-value=28 Score=34.33 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChhhHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~ 732 (1034)
.-+.+.+|+|||||+.+-
T Consensus 23 ~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457789999999998654
No 473
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=38.88 E-value=13 Score=36.72 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChhhHHH
Q psy13788 715 NNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~ 731 (1034)
..+++.++.|||||+.+
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999865
No 474
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=38.79 E-value=18 Score=35.89 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=24.7
Q ss_pred ccEEEEecccccCCCChhHHHHHHHHHHHhhhccCCCeEEEEEccC
Q psy13788 819 VALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTA 864 (1034)
Q Consensus 819 l~~lViDEaH~l~~~~~~~~~~il~rl~~l~~~~~~~~~iv~lSAT 864 (1034)
-.+|||||||.+........+ ....+..+........++|+++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e-~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSK-IPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCC-CCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccch-hHHHHHHHHhcCcCCeEEEEECCC
Confidence 568999999998431100011 011222333444556788888776
No 475
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=38.75 E-value=13 Score=35.83 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=12.4
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
+..+++.++.|||||+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999996544
No 476
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=38.70 E-value=15 Score=34.90 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.0
Q ss_pred cEEEEcCCCChhhHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l 733 (1034)
.+++.++.|||||+.+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999996544
No 477
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=38.62 E-value=11 Score=36.48 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=14.2
Q ss_pred cEEEEcCCCChhhHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l 733 (1034)
-+.+++|+|||||+...+
T Consensus 4 ~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp EEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467889999999986544
No 478
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=38.47 E-value=14 Score=41.63 Aligned_cols=20 Identities=45% Similarity=0.579 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
.+++++.+|+|+|||..+-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 46899999999999986543
No 479
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=38.39 E-value=27 Score=39.82 Aligned_cols=23 Identities=43% Similarity=0.395 Sum_probs=18.5
Q ss_pred CCCcEEEEcCCCChhhHHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITC 735 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~i 735 (1034)
...++++.+|+|+|||.++....
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHH
Confidence 45689999999999999765433
No 480
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=38.35 E-value=16 Score=36.18 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=17.7
Q ss_pred CCCcEEEEcCCCChhhHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~ 734 (1034)
.+..+++.++.|||||+.+-.-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 4567999999999999966543
No 481
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=38.34 E-value=13 Score=38.73 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChhhHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l 733 (1034)
...++++++.|||||+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHH
Confidence 34688999999999986544
No 482
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=38.17 E-value=15 Score=37.55 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=16.2
Q ss_pred cCCCcEEEEcCCCChhhH
Q psy13788 712 HTDNNVLLGAPTGSGKTI 729 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~ 729 (1034)
..|.-+.+.+|+|||||+
T Consensus 29 ~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 378889999999999998
No 483
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=38.16 E-value=22 Score=36.07 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=18.1
Q ss_pred CCCcEEEEcCCCChhhHHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEITC 735 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~i 735 (1034)
.+..+++.++.|||||+.+..-.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999665443
No 484
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=38.08 E-value=10 Score=39.25 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChhhHHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~l 733 (1034)
..+++.+|+|||||+.+-.
T Consensus 33 ~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp EEEEEESCGGGTTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986543
No 485
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=38.03 E-value=87 Score=34.45 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=24.1
Q ss_pred hhHHHHHHHHh--cCCCcEEEEcCCCChhhHHH
Q psy13788 701 PIQTQIFHCLY--HTDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 701 ~~Q~~ai~~l~--~~~~~vll~apTGsGKT~~~ 731 (1034)
..=..+++.+. ..|....|.+|.|+|||...
T Consensus 160 ~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 160 IYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp CHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred hccchhhhhcccccCCceEEEecCCCCChhHHH
Confidence 34456777664 36789999999999999866
No 486
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=37.97 E-value=21 Score=38.42 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=18.4
Q ss_pred HHHHHhcCCCc--EEEEcCCCChhhHHH
Q psy13788 706 IFHCLYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 706 ai~~l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
.+..++ .|-| ++..++||||||...
T Consensus 72 lv~~~l-~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCI-DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHh-CCCEEEEEeECCCCCCCcEEE
Confidence 455556 5555 677899999999864
No 487
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=37.87 E-value=16 Score=36.09 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCChhhHHHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~l~ 734 (1034)
+..+++.++.|||||+.+-..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 456889999999999966443
No 488
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=37.73 E-value=16 Score=50.72 Aligned_cols=26 Identities=38% Similarity=0.663 Sum_probs=21.2
Q ss_pred HHHHHhcCCCcEEEEcCCCChhhHHH
Q psy13788 706 IFHCLYHTDNNVLLGAPTGSGKTIAA 731 (1034)
Q Consensus 706 ai~~l~~~~~~vll~apTGsGKT~~~ 731 (1034)
.+..++..++++++++|||+|||..+
T Consensus 1259 ll~~~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1259 IFYDLLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHHTCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCCHHHHH
Confidence 34555567899999999999999864
No 489
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=37.64 E-value=14 Score=36.91 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHhcCCCcEEEEcCCCChhhHHHHH
Q psy13788 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 699 ~~~~Q~~ai~~l~~~~~~vll~apTGsGKT~~~~l 733 (1034)
.++.+..... + ..+..+++.++.|||||+.+-.
T Consensus 12 ~~~~~r~~~~-~-~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 12 LTRSERTELR-N-QRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp CCHHHHHHHH-T-SSCEEEEEECSTTSSHHHHHHH
T ss_pred cCHHHhhccc-C-CCCCEEEEECCCCCCHHHHHHH
Confidence 4455555533 2 3667789999999999986544
No 490
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=37.43 E-value=17 Score=35.66 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=14.8
Q ss_pred cEEEEcCCCChhhHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEI 733 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l 733 (1034)
.+++.++.|||||+.+-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~ 19 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAE 19 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 478999999999986543
No 491
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=37.20 E-value=16 Score=36.22 Aligned_cols=17 Identities=47% Similarity=0.401 Sum_probs=13.9
Q ss_pred cEEEEcCCCChhhHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~ 732 (1034)
.+.+.+|.|||||+++-
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998543
No 492
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=36.91 E-value=17 Score=36.31 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=15.4
Q ss_pred cEEEEcCCCChhhHHHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~l~ 734 (1034)
.+++.++.|||||+.+-.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999965443
No 493
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=36.86 E-value=17 Score=41.05 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChhhHHHH
Q psy13788 714 DNNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 714 ~~~vll~apTGsGKT~~~~ 732 (1034)
.+.+++.+|+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998654
No 494
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=36.85 E-value=21 Score=36.58 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=17.4
Q ss_pred CCCcEEEEcCCCChhhHHHHHH
Q psy13788 713 TDNNVLLGAPTGSGKTIAAEIT 734 (1034)
Q Consensus 713 ~~~~vll~apTGsGKT~~~~l~ 734 (1034)
.+..+++.+|.|||||+.+..-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4457999999999999866443
No 495
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=36.79 E-value=16 Score=36.64 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=16.2
Q ss_pred cCCCcEEEEcCCCChhhH
Q psy13788 712 HTDNNVLLGAPTGSGKTI 729 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~ 729 (1034)
..|.-+.+.+|.|||||+
T Consensus 33 ~~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp ETTCCEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 378889999999999998
No 496
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=36.62 E-value=22 Score=38.81 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=16.9
Q ss_pred HHHhcCCCc--EEEEcCCCChhhHHH
Q psy13788 708 HCLYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 708 ~~l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
..++ .|-| ++..++||||||...
T Consensus 86 ~~~l-~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 86 QNAF-DGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHH-TTCCEEEEEEECTTSSHHHHH
T ss_pred HHHh-CCceeEEEeeCCCCCCCceEE
Confidence 3445 5555 677899999999864
No 497
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=36.59 E-value=22 Score=38.81 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=16.2
Q ss_pred HHhcCCCc--EEEEcCCCChhhHHH
Q psy13788 709 CLYHTDNN--VLLGAPTGSGKTIAA 731 (1034)
Q Consensus 709 ~l~~~~~~--vll~apTGsGKT~~~ 731 (1034)
.++ .|.| ++..++||||||.+.
T Consensus 98 ~~l-~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 98 QAL-DGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHh-CCCceEEEEECCCCCCCceEe
Confidence 344 5555 667899999999864
No 498
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=36.49 E-value=16 Score=39.11 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.7
Q ss_pred cCCCcEEEEcCCCChhhHH
Q psy13788 712 HTDNNVLLGAPTGSGKTIA 730 (1034)
Q Consensus 712 ~~~~~vll~apTGsGKT~~ 730 (1034)
..|.-+.+.+|+|||||+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 3788899999999999983
No 499
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=36.36 E-value=17 Score=35.78 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.2
Q ss_pred cEEEEcCCCChhhHHHH
Q psy13788 716 NVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 716 ~vll~apTGsGKT~~~~ 732 (1034)
.+.+.++.|||||+.+-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47899999999998543
No 500
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=36.31 E-value=17 Score=35.63 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChhhHHHH
Q psy13788 715 NNVLLGAPTGSGKTIAAE 732 (1034)
Q Consensus 715 ~~vll~apTGsGKT~~~~ 732 (1034)
..+.+.+++|||||+++-
T Consensus 9 ~~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999999543
Done!