Your job contains 1 sequence.
>psy13788
DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTA
YHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFG
RAGRPQYNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIFG
RAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAEVALGTIGNID
EAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYD
EVATDPDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELF
TEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVN
ILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFET
KQWPHETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHV
GDKVKQCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPD
SDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFK
HLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLG
APTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELT
GDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEV
IVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISG
FPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMW
VHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQMPKLAALSSKENQNVI
NRSTSANGNFDFNR
The BLAST search returned 9 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13788
(1034 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NTD6 - symbol:ascc3 "Activating signal cointe... 2337 1.8e-300 3
MGI|MGI:1925237 - symbol:Ascc3 "activating signal cointeg... 2298 7.1e-297 3
UNIPROTKB|E1BNG3 - symbol:ascc3 "Activating signal cointe... 2310 1.2e-296 3
UNIPROTKB|F6Y2F0 - symbol:ASCC3 "Uncharacterized protein"... 2302 2.1e-295 3
UNIPROTKB|Q8N3C0 - symbol:ASCC3 "Activating signal cointe... 2302 2.1e-295 3
UNIPROTKB|E2QVY0 - symbol:ASCC3 "Uncharacterized protein"... 2302 2.1e-295 3
FB|FBgn0038344 - symbol:CG5205 species:7227 "Drosophila m... 2280 2.0e-292 3
RGD|1307995 - symbol:Ascc3 "activating signal cointegrato... 2211 6.1e-287 3
DICTYBASE|DDB_G0290389 - symbol:ascc3 "activating signal ... 1839 5.5e-239 3
ASPGD|ASPL0000044033 - symbol:AN2482 species:162425 "Emer... 1817 1.2e-234 3
UNIPROTKB|G4N5J1 - symbol:MGG_06124 "Activating signal co... 1736 6.8e-226 3
POMBASE|SPBC13G1.10c - symbol:mug81 "ATP-dependent RNA he... 1714 4.3e-224 3
WB|WBGene00013189 - symbol:Y54E2A.4 species:6239 "Caenorh... 1667 2.4e-219 3
CGD|CAL0003134 - symbol:orf19.3980 species:5476 "Candida ... 1660 1.2e-217 3
ZFIN|ZDB-GENE-081105-64 - symbol:si:ch211-251j10.5 "si:ch... 1603 1.6e-210 4
UNIPROTKB|E1BH78 - symbol:LOC100850262 "Uncharacterized p... 1593 1.4e-209 4
UNIPROTKB|O75643 - symbol:SNRNP200 "U5 small nuclear ribo... 1589 3.8e-209 4
UNIPROTKB|F1LNJ2 - symbol:Ascc3l1 "Protein Ascc3l1" speci... 1588 4.8e-209 4
TAIR|locus:2037375 - symbol:emb1507 "embryo defective 150... 1591 1.8e-208 3
SGD|S000003503 - symbol:SLH1 "Putative RNA helicase relat... 1609 1.6e-207 3
TAIR|locus:2059969 - symbol:AT2G42270 species:3702 "Arabi... 1547 2.6e-201 3
FB|FBgn0263599 - symbol:l(3)72Ab "lethal (3) 72Ab" specie... 1511 8.3e-199 3
WB|WBGene00012896 - symbol:snrp-200 species:6239 "Caenorh... 1363 9.9e-179 3
UNIPROTKB|Q9U2G0 - symbol:Y46G5A.4 "Putative U5 small nuc... 1363 9.9e-179 3
DICTYBASE|DDB_G0270042 - symbol:ascc3l "U5 small nuclear ... 1404 1.4e-178 3
ASPGD|ASPL0000051297 - symbol:AN10194 species:162425 "Eme... 1345 4.5e-172 3
POMBASE|SPAC9.03c - symbol:brr2 "U5 snRNP complex subunit... 1243 4.2e-165 3
GENEDB_PFALCIPARUM|PF14_0370 - symbol:PF14_0370 "RNA heli... 860 1.4e-127 3
UNIPROTKB|Q8IL78 - symbol:PF14_0370 "DEAD/DEAH box helica... 860 1.4e-127 3
UNIPROTKB|F1RYR3 - symbol:LOC100517018 "Uncharacterized p... 1219 4.9e-124 1
SGD|S000000974 - symbol:BRR2 "RNA-dependent ATPase RNA he... 878 1.5e-105 3
GENEDB_PFALCIPARUM|PFD1060w - symbol:PFD1060w "u5 small n... 489 5.4e-91 5
UNIPROTKB|Q8IFP1 - symbol:PFD1060w "U5 small nuclear ribo... 489 5.4e-91 5
UNIPROTKB|I3LAA7 - symbol:I3LAA7 "Uncharacterized protein... 871 3.7e-87 1
UNIPROTKB|I3LT20 - symbol:LOC100525691 "Uncharacterized p... 853 3.0e-85 1
CGD|CAL0001532 - symbol:orf19.3098 species:5476 "Candida ... 487 7.7e-74 3
UNIPROTKB|F1SU44 - symbol:F1SU44 "Uncharacterized protein... 476 1.1e-41 1
ASPGD|ASPL0000030426 - symbol:AN5514 species:162425 "Emer... 472 5.9e-41 1
UNIPROTKB|H9L1I7 - symbol:SNRNP200 "Uncharacterized prote... 462 1.4e-40 1
RGD|1584010 - symbol:Hfm1 "HFM1, ATP-dependent DNA helica... 464 1.9e-40 1
UNIPROTKB|F1S4E9 - symbol:HFM1 "Uncharacterized protein" ... 444 6.8e-38 1
UNIPROTKB|A2PYH4 - symbol:HFM1 "Probable ATP-dependent DN... 442 1.1e-37 1
UNIPROTKB|F1MFR1 - symbol:HFM1 "Uncharacterized protein" ... 437 3.9e-37 1
UNIPROTKB|E2RA34 - symbol:HFM1 "Uncharacterized protein" ... 433 1.1e-36 1
UNIPROTKB|E2R5U9 - symbol:HFM1 "Uncharacterized protein" ... 433 1.1e-36 1
UNIPROTKB|G4N3Z7 - symbol:MGG_05900 "Uncharacterized prot... 425 1.7e-34 2
ZFIN|ZDB-GENE-061207-43 - symbol:hfm1 "HFM1, ATP-dependen... 361 3.5e-34 3
SGD|S000003220 - symbol:HFM1 "Meiosis specific DNA helica... 381 3.1e-31 1
UNIPROTKB|H9L351 - symbol:H9L351 "Uncharacterized protein... 261 1.0e-29 2
UNIPROTKB|F1SU36 - symbol:SNRNP200 "Uncharacterized prote... 255 4.5e-29 3
UNIPROTKB|A6NGI5 - symbol:HFM1 "Probable ATP-dependent DN... 340 2.3e-28 3
TAIR|locus:2089144 - symbol:RCK "ROCK-N-ROLLERS" species:... 319 4.2e-28 2
UNIPROTKB|B4E0P5 - symbol:SNRNP200 "U5 small nuclear ribo... 335 6.3e-28 2
UNIPROTKB|D4A4G4 - symbol:Hfm1 "Protein Hfm1" species:101... 298 2.1e-24 1
UNIPROTKB|H9L353 - symbol:H9L353 "Uncharacterized protein... 248 7.9e-20 1
UNIPROTKB|I3L8F4 - symbol:I3L8F4 "Uncharacterized protein... 211 7.0e-16 1
UNIPROTKB|I3LVA7 - symbol:I3LVA7 "Uncharacterized protein... 209 1.2e-15 1
UNIPROTKB|E1C287 - symbol:E1C287 "Uncharacterized protein... 206 2.4e-15 1
UNIPROTKB|F1NYH9 - symbol:HELQ "Uncharacterized protein" ... 199 2.5e-12 2
UNIPROTKB|J9P160 - symbol:HELQ "Uncharacterized protein" ... 202 5.1e-12 1
UNIPROTKB|E2RST3 - symbol:HELQ "Uncharacterized protein" ... 202 5.4e-12 1
ZFIN|ZDB-GENE-060503-421 - symbol:helq "helicase, POLQ-li... 210 7.9e-12 2
DICTYBASE|DDB_G0279107 - symbol:DDB_G0279107 "Helicase PO... 191 9.4e-11 1
UNIPROTKB|F1NMU1 - symbol:POLQ "Uncharacterized protein" ... 189 1.0e-10 1
MGI|MGI:2176740 - symbol:Helq "helicase, POLQ-like" speci... 189 1.3e-10 1
CGD|CAL0002171 - symbol:orf19.6425 species:5476 "Candida ... 188 2.0e-10 1
FB|FBgn0002899 - symbol:mus301 "mutagen-sensitive 301" sp... 186 2.6e-10 1
UNIPROTKB|E9PSY5 - symbol:Helq "Protein Helq" species:101... 184 3.0e-10 1
UNIPROTKB|E9PT19 - symbol:Helq "Protein Helq" species:101... 184 3.4e-10 1
UNIPROTKB|O75417 - symbol:POLQ "DNA polymerase theta" spe... 186 7.7e-10 1
UNIPROTKB|F1PXD9 - symbol:POLQ "Uncharacterized protein" ... 179 2.9e-09 1
UNIPROTKB|C9JAQ9 - symbol:SNRNP200 "U5 small nuclear ribo... 173 3.1e-09 1
RGD|1309795 - symbol:Polq "polymerase (DNA directed), the... 179 4.2e-09 1
UNIPROTKB|D4A628 - symbol:Polq "Polymerase (DNA directed)... 179 4.2e-09 1
FB|FBgn0002905 - symbol:mus308 "mutagen-sensitive 308" sp... 178 4.3e-09 1
SGD|S000004390 - symbol:SKI2 "Ski complex component and p... 198 5.3e-09 3
WB|WBGene00021905 - symbol:helq-1 species:6239 "Caenorhab... 173 5.5e-09 1
UNIPROTKB|H9L1I6 - symbol:SNRNP200 "Uncharacterized prote... 170 5.7e-09 1
UNIPROTKB|H9KZ72 - symbol:SNRNP200 "Uncharacterized prote... 170 6.4e-09 1
UNIPROTKB|Q8TDG4 - symbol:HELQ "Helicase POLQ-like" speci... 188 7.1e-09 2
UNIPROTKB|F1RVE2 - symbol:HELQ "Uncharacterized protein" ... 186 7.2e-09 2
UNIPROTKB|E1BMC0 - symbol:POLQ "Uncharacterized protein" ... 183 9.3e-08 2
WB|WBGene00020964 - symbol:polq-1 species:6239 "Caenorhab... 160 2.8e-07 1
WB|WBGene00016194 - symbol:C28H8.3 species:6239 "Caenorha... 159 3.8e-07 1
UNIPROTKB|J9P0M0 - symbol:DDX60 "Uncharacterized protein"... 157 6.1e-07 1
UNIPROTKB|E2QSY2 - symbol:DDX60 "Uncharacterized protein"... 157 6.1e-07 1
UNIPROTKB|F1P0I1 - symbol:F1P0I1 "Uncharacterized protein... 175 1.4e-06 3
TAIR|locus:2020573 - symbol:EMB25 "EMBRYO DEFECTIVE 25" s... 154 1.5e-06 2
UNIPROTKB|Q10701 - symbol:helY "Probable helicase HelY" s... 136 2.3e-06 2
POMBASE|SPCC550.03c - symbol:SPCC550.03c "Ski complex RNA... 163 2.4e-06 2
SGD|S000002699 - symbol:HRQ1 "3'-5'DNA helicase that has ... 149 2.6e-06 1
TAIR|locus:2026001 - symbol:MTR4 "homolog of yeast MTR4" ... 148 2.9e-06 1
ZFIN|ZDB-GENE-040724-232 - symbol:si:rp71-1p14.5 "si:rp71... 169 3.0e-06 2
RGD|1560014 - symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box po... 164 3.6e-06 2
UNIPROTKB|Q5H9U9 - symbol:DDX60L "Probable ATP-dependent ... 148 5.6e-06 1
UNIPROTKB|Q8IY21 - symbol:DDX60 "Probable ATP-dependent R... 158 5.7e-06 4
UNIPROTKB|E3W982 - symbol:HELQ "Helicase POLQ-like" speci... 150 7.8e-06 2
POMBASE|SPAC17H9.02 - symbol:SPAC17H9.02 "TRAMP complex A... 144 8.3e-06 1
ASPGD|ASPL0000001605 - symbol:AN10757 species:162425 "Eme... 144 1.0e-05 1
UNIPROTKB|P96901 - symbol:lhr "PROBABLE ATP-DEPENDENT HEL... 117 2.1e-05 2
WARNING: Descriptions of 27 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1NTD6 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006307 "DNA dealkylation involved in
DNA repair" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 KO:K01529 GO:GO:0043140
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
EMBL:AADN02002229 EMBL:AADN02002230 EMBL:AADN02002231
EMBL:AADN02002232 EMBL:AADN02002233 EMBL:AADN02002234
IPI:IPI00590520 RefSeq:XP_419816.1 UniGene:Gga.31679
ProteinModelPortal:F1NTD6 PRIDE:F1NTD6 GeneID:421790
KEGG:gga:421790 Uniprot:F1NTD6
Length = 2211
Score = 2337 (827.7 bits), Expect = 1.8e-300, Sum P(3) = 1.8e-300
Identities = 440/732 (60%), Positives = 563/732 (76%)
Query: 252 FVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQH 311
F+ +LADNLNAE+ALGT+ N++EAV+W+SY+YL+VRMR NP YGIS+ DP L +H
Sbjct: 899 FLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQMDPGLEKH 958
Query: 312 RTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDV 371
R L+ + LDKA MIRF RT + TDLGRTAS+YYIK+N IE F E +
Sbjct: 959 REQLVIEVGRKLDKARMIRFEERTGFFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1018
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
IL+++S+A EFEQ+KVR+EE+ ELD L + CE+P GG EN +GK+NILLQT +SRG
Sbjct: 1019 DILAIVSKAEEFEQIKVREEEIEELDTLLNDFCELPAPGGVENNYGKINILLQTYISRGE 1078
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
++SFSL+SD YV QN RI+RALFEI L + M R L + + + + W +PLRQ
Sbjct: 1079 LDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQ 1138
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI 551
+L P +L+K+E++ LTV+ +++M EI +ML +G KVKQC +I
Sbjct: 1139 FS----------VLPPSVLSKLEEKNLTVDKMKDMRKDEIGHMLHHVKIGLKVKQCVHQI 1188
Query: 552 PLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFL 611
P + +E+ + PITRTVL++ L I +F+WND+ T EP+WIWVEDP +D IYHSEYF+
Sbjct: 1189 PSIAMEATIQPITRTVLRVRLNITPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFI 1248
Query: 612 LSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPH 671
+ KKQVITK + L+ TIP+ +PLP+QY IRA+SDR+LG+ ++F+HLI+PE HPPH
Sbjct: 1249 IQKKQVITKEPQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPH 1308
Query: 672 TNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAA 731
T LL+LQPLPV+AL P+YE LYKF+HFNPIQTQIFH LYHTD NVLLGAPTGSGKT+AA
Sbjct: 1309 TELLDLQPLPVTALGHPEYEVLYKFTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTVAA 1368
Query: 732 EITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791
E+ FRVF + P +K VYIAPLKALV+ER+ DWKV+ E +L KKVVELTGDVTPD++AI+
Sbjct: 1369 ELAIFRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGKKVVELTGDVTPDMRAIA 1428
Query: 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSY 851
A +IVTTPEKWDGVSRSWQNR+YVQ V+++IIDEIHLLG++RGPVLEVIVSR NFISS+
Sbjct: 1429 QADLIVTTPEKWDGVSRSWQNRSYVQKVSILIIDEIHLLGDERGPVLEVIVSRTNFISSH 1488
Query: 852 TKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMA 911
T++ VR+VGLSTALANA+DLA WLNI + G++NFRPSVRPVPLEVHI GFPG+ YCPRMA
Sbjct: 1489 TEKPVRVVGLSTALANARDLADWLNINQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMA 1548
Query: 912 KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNI 971
+MNKP + AI+ HSP KPV+IFVSSRRQTRLT++DLI LA E +PK W+ + EM++I
Sbjct: 1549 RMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTSLDLIAFLATEDDPKQWLKMDEREMNDI 1608
Query: 972 VDNIKDSNLKLT 983
+ ++DSNLKLT
Sbjct: 1609 IGTVRDSNLKLT 1620
Score = 371 (135.7 bits), Expect = 9.4e-30, P = 9.4e-30
Identities = 100/259 (38%), Positives = 141/259 (54%)
Query: 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--------PEAKVVYIA 751
N IQ+ +F Y+T+ N+L+ APTG+GKT A +T +Q E K+VY+A
Sbjct: 487 NRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVA 546
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR-SW 810
P+KAL E + + E L V ELTGD+ I ++VTTPEKWD V+R S
Sbjct: 547 PMKALAAEMTNYFSKRLEP-LGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSV 605
Query: 811 QNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKD 870
+ Q V L+I+DE+HLL EDRGPVLE IV+R T+ +R++GLS L N D
Sbjct: 606 GDVALSQLVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLD 665
Query: 871 LATWLNITKQ-GMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIY-TAIKQHSPEK 928
+AT+L++ G++ F RPVPL G ++ M++ Y +KQ
Sbjct: 666 VATFLHVNPYIGLFYFDSRFRPVPLGQTFIGIKTTNKVQQLNHMDEVCYENVLKQIMAGH 725
Query: 929 PVMIFVSSRRQTRLTAIDL 947
VM+FV +R T TA+ L
Sbjct: 726 QVMVFVHARNATVRTAMAL 744
Score = 331 (121.6 bits), Expect = 1.8e-300, Sum P(3) = 1.8e-300
Identities = 62/104 (59%), Positives = 82/104 (78%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y AK G +V +GILDV+QIFGRAGRPQ++ G IIT H+KL+HYL+LLT Q P
Sbjct: 835 KGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNP 894
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
IES F+ +LADNLNAE+ALGT+ N++EAV+W+ +Y+ AN
Sbjct: 895 IESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRAN 938
Score = 258 (95.9 bits), Expect = 1.8e-300, Sum P(3) = 1.8e-300
Identities = 49/86 (56%), Positives = 67/86 (77%)
Query: 14 DEVHLLHGDRGPV-IEALVA--RTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLIC 70
+EV + H + P+ IE + + L +IGQ FKG+K LNRIQS+V++TAY+TNEN+LIC
Sbjct: 448 EEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLAFKGMKRLNRIQSIVFETAYNTNENMLIC 507
Query: 71 APTGAGKTNVAMLTIAHQIKQHISQG 96
APTGAGKTN+AMLT+ H+I+QH+ G
Sbjct: 508 APTGAGKTNIAMLTVLHEIRQHVQHG 533
Score = 239 (89.2 bits), Expect = 5.4e-66, Sum P(4) = 5.4e-66
Identities = 65/238 (27%), Positives = 117/238 (49%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
LAD+LNAE+A GTI + +A+ +++++Y R+ +NP Y + D V+ D + ++ ++L
Sbjct: 1740 LADHLNAEIAAGTITSKQDAMDYITWTYFFRRLIMNPTYYNL--DNVSHDT-MNKYLSSL 1796
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
+E + L+ ++ I R + GR AS YY+KH I +F + + +L
Sbjct: 1797 VEKSLFDLECSYCIEIGEDNRTIEPLTYGRIASYYYLKHPTIGMFKDQLKPESSVEELLL 1856
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCE-IPIRGGS---ENVHGKVNILLQTLLSRGR 431
+++ A E+ L VR H D + E + +PI ++ H K ++LLQ S
Sbjct: 1857 ILTNADEYTDLPVR----HNEDQMNSELAKHLPIEVNPHSFDSSHTKTHLLLQAHFSHAI 1912
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPL 489
+ +D + V IRI +A+ ++T H + A M +W H++ L
Sbjct: 1913 LPCPDYATDTKTVLDQAIRICQAMLDVTAHHGWLVAALNITNLVQMVVQGRWIHDSSL 1970
Score = 197 (74.4 bits), Expect = 2.0e-30, Sum P(5) = 2.0e-30
Identities = 45/112 (40%), Positives = 62/112 (55%)
Query: 149 FTEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
F H+ KGTE Y+ K YV I DVLQ+ GRAGRPQ++ G A I+ K + Y
Sbjct: 1664 FPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYK 1723
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEA---VRWLIIYINFVAN 255
L P+ES+ + LAD+LNAE+A GTI + +A + W + + N
Sbjct: 1724 KFLYEPFPVESSLLDVLADHLNAEIAAGTITSKQDAMDYITWTYFFRRLIMN 1775
Score = 158 (60.7 bits), Expect = 9.2e-293, Sum P(4) = 9.2e-293
Identities = 30/38 (78%), Positives = 37/38 (97%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
DVAL++LVKLLI+DEVHLLH DRGPV+E++VARTLRQ+
Sbjct: 607 DVALSQLVKLLILDEVHLLHEDRGPVLESIVARTLRQV 644
Score = 141 (54.7 bits), Expect = 1.0e-272, Sum P(4) = 1.0e-272
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 49 LNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
L + +SLV + + + +L+C T A N+ AH + + +GT++Y AK G +V
Sbjct: 796 LRQDRSLVENLFSNGHIKVLVCTATLAWGVNLP----AHAV---VIKGTQIYAAKRGSFV 848
Query: 109 HIGILDVLQIFGRAGRPQYN 128
+GILDV+QIFGRAGRPQ++
Sbjct: 849 DLGILDVMQIFGRAGRPQFD 868
Score = 101 (40.6 bits), Expect = 4.0e-25, Sum P(4) = 4.0e-25
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 11 LIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLIC 70
LI+ E H H + ++ L L EV N IQ+ ++ T YHT+ N+L+
Sbjct: 1299 LILPERHPPHTELLD-LQPLPVTALGHPEYEVLYKFTHFNPIQTQIFHTLYHTDCNVLLG 1357
Query: 71 APTGAGKTNVAMLTI 85
APTG+GKT A L I
Sbjct: 1358 APTGSGKTVAAELAI 1372
Score = 97 (39.2 bits), Expect = 2.4e-41, Sum P(4) = 2.4e-41
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGR 134
I +GTE Y+ K YV I DVLQ+ GRAGRPQ++ D G+
Sbjct: 1670 IVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFD--DQGK 1709
Score = 96 (38.9 bits), Expect = 2.4e-30, Sum P(5) = 2.4e-30
Identities = 29/86 (33%), Positives = 47/86 (54%)
Query: 77 KTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGI-LDVLQIFGRAGRPQY-NTSDLGR 134
+ N + I+H+ Q + G E + + + +G LD ++ R + +++DLGR
Sbjct: 936 RANPLVYGISHKAYQ-MDPGLEKHREQ--LVIEVGRKLDKARMIRFEERTGFFSSTDLGR 992
Query: 135 TASNYYIKHNDIELFTE----HMTKG 156
TAS+YYIK+N IE F E H T+G
Sbjct: 993 TASHYYIKYNTIETFNELFDAHKTEG 1018
Score = 93 (37.8 bits), Expect = 2.6e-24, Sum P(4) = 2.6e-24
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V +LIIDE+HLL +RGPV+E +V+RT
Sbjct: 1456 VSILIIDEIHLLGDERGPVLEVIVSRT 1482
Score = 55 (24.4 bits), Expect = 9.1e-22, Sum P(5) = 9.1e-22
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 133 GRTASNYYIKHNDIELFTEHM 153
GR AS YY+KH I +F + +
Sbjct: 1825 GRIASYYYLKHPTIGMFKDQL 1845
Score = 51 (23.0 bits), Expect = 5.4e-66, Sum P(4) = 5.4e-66
Identities = 27/107 (25%), Positives = 46/107 (42%)
Query: 567 VLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLI 626
VL+IHL + + K S P + V+D + F+ E + KK++I +
Sbjct: 2091 VLQIHLQ-RTQMGYQGKQDSKAVAPRFPKVKD-EGWFLILGE---VDKKELIALKRTGYV 2145
Query: 627 -----MTIPLSDP-LPNQ--YLIRAMSDRYLGSVVQHSMSFKHLIVP 665
+++ P P + Y + MSD YLG Q+ + I+P
Sbjct: 2146 RNRNTVSVAFYTPETPGKCIYTLYLMSDSYLGMDQQYDIYLN--IIP 2190
Score = 46 (21.3 bits), Expect = 8.9e-46, Sum P(3) = 8.9e-46
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 847 FISSYTKRNVRLVGLSTA--LANAKDLATWLNITKQGMYNFRPSVRPVPLEVHIS 899
F+SS +R RL L LA D WL + ++ M + +VR L++ ++
Sbjct: 1570 FVSS--RRQTRLTSLDLIAFLATEDDPKQWLKMDEREMNDIIGTVRDSNLKLTLA 1622
Score = 41 (19.5 bits), Expect = 9.2e-293, Sum P(4) = 9.2e-293
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 38 IGQEVFKGVKSLNRIQSL 55
+GQ F G+K+ N++Q L
Sbjct: 690 LGQ-TFIGIKTTNKVQQL 706
Score = 38 (18.4 bits), Expect = 9.1e-22, Sum P(5) = 9.1e-22
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 196 ITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAEVA 232
+ P + L +LTN V + D +N+E+A
Sbjct: 1845 LKPESSVEELLLILTNADEYTDLPVRHNEDQMNSELA 1881
Score = 38 (18.4 bits), Expect = 3.5e-15, Sum P(3) = 3.5e-15
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 620 KSEESLIMTIPLSDPLPNQYL 640
+S +S+I + LS LPN YL
Sbjct: 645 ESTQSMIRILGLSATLPN-YL 664
>MGI|MGI:1925237 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex
subunit 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 MGI:MGI:1925237 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529
OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC137877 EMBL:AC153529
EMBL:AC159114 EMBL:BC032189 EMBL:BC059917 EMBL:AK021027
EMBL:AK052745 IPI:IPI00553687 RefSeq:NP_932124.2 UniGene:Mm.222497
PRIDE:E9PZJ8 Ensembl:ENSMUST00000035606 GeneID:77987 KEGG:mmu:77987
HOGENOM:HOG000157749 NextBio:347945 Bgee:E9PZJ8 Uniprot:E9PZJ8
Length = 2198
Score = 2298 (814.0 bits), Expect = 7.1e-297, Sum P(3) = 7.1e-297
Identities = 436/732 (59%), Positives = 555/732 (75%)
Query: 252 FVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQH 311
F+ +LADNLNAE+ALGT+ N++EAVRW+SY+YL+VRMR NP YGIS+ DP L +H
Sbjct: 891 FLESLADNLNAEIALGTVTNVEEAVRWMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKH 950
Query: 312 RTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDV 371
R L+ Q LDKA MIRF RT + TDLGRTAS++YIK+N IE F E +
Sbjct: 951 REQLLIEVGQKLDKAKMIRFEERTGYFSSTDLGRTASHFYIKYNTIETFNELFDAHKTEG 1010
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
I +++S+A EF+Q+KVR+EE+ ELD L CE+ GG EN +GK+NILLQT +SRG
Sbjct: 1011 DIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGE 1070
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
++SFSL+SD YV QN RI+RALFEI L + M R L + + + + W +PLRQ
Sbjct: 1071 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQ 1130
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI 551
+L P IL ++E++ LTV+ L++M EI ++L ++G KVKQC +I
Sbjct: 1131 FS----------VLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQI 1180
Query: 552 PLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFL 611
P + +E+ + PITRTVL++ L I +FSWND+ T EP+WIWVEDP +D IYHSEYFL
Sbjct: 1181 PSVTMEASIQPITRTVLRVSLNIHPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFL 1240
Query: 612 LSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPH 671
KKQVI K + L+ TIP+ +PLP+QY IRA+SDR+LG+ ++F+HLI+PE HPPH
Sbjct: 1241 ALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPH 1300
Query: 672 TNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAA 731
T LL+LQPLP++AL YE+LY FSHFNP+QTQIFH LYHTD NVLLGAPTGSGKT+AA
Sbjct: 1301 TELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAA 1360
Query: 732 EITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791
E+ FRVF + P +K VYIAPLKALV+ER+ DWK++ E +L KKV+ELTGDVTPD+++I+
Sbjct: 1361 ELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIA 1420
Query: 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSY 851
A +IVTTPEKWDGVSRSWQNR+YVQ V ++IIDEIHLLGE+RGPVLEVIVSR NFISS+
Sbjct: 1421 KADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRTNFISSH 1480
Query: 852 TKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMA 911
T++ VR+VGLSTALANA+DLA WLNI + G++NFRPSVRPVPLEVHI GFPG+ YCPRMA
Sbjct: 1481 TEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMA 1540
Query: 912 KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNI 971
MNKP + AI+ HSP KPV+IFVSSRRQTRLTA++LI LA E +PK W++ + EMDNI
Sbjct: 1541 SMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEQEMDNI 1600
Query: 972 VDNIKDSNLKLT 983
+ ++DSNLKLT
Sbjct: 1601 IGTVRDSNLKLT 1612
Score = 386 (140.9 bits), Expect = 2.3e-31, P = 2.3e-31
Identities = 106/306 (34%), Positives = 160/306 (52%)
Query: 654 QHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHT 713
+++ ++ + +P P E +P+ + L + + N IQ+ +F Y+T
Sbjct: 434 ENTKLYEEVRIPYGEPMPVGFEE-KPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNT 492
Query: 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQC--------PEAKVVYIAPLKALVKERVADWK 765
+ N+L+ APTG+GKT A +T +Q E K+VY+AP+KAL E +
Sbjct: 493 NENMLICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYVAPMKALAAEMTNYFS 552
Query: 766 VKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR-SWQNRNYVQSVALIII 824
+ E L V ELTGD+ I ++VTTPEKWD V+R S + Q V L+I+
Sbjct: 553 KRLEP-LGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLIL 611
Query: 825 DEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ-GMY 883
DE+HLL EDRGPVLE IV+R T+ +R++GLS L N D+AT+L++ G++
Sbjct: 612 DEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLF 671
Query: 884 NFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAI-KQHSPEKPVMIFVSSRRQTRL 942
F RPVPL G ++ M++ Y ++ KQ VM+FV +R T
Sbjct: 672 YFDGRFRPVPLGQTFLGIKSTNKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVR 731
Query: 943 TAIDLI 948
TA+ LI
Sbjct: 732 TAMSLI 737
Score = 337 (123.7 bits), Expect = 7.1e-297, Sum P(3) = 7.1e-297
Identities = 64/104 (61%), Positives = 82/104 (78%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y AK G +V +GILDV+QIFGRAGRPQ++ G IIT H+KL+HYLSLLT Q P
Sbjct: 827 KGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNP 886
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
IES F+ +LADNLNAE+ALGT+ N++EAVRW+ +Y+ AN
Sbjct: 887 IESQFLESLADNLNAEIALGTVTNVEEAVRWMSYTYLYVRMRAN 930
Score = 257 (95.5 bits), Expect = 7.1e-297, Sum P(3) = 7.1e-297
Identities = 53/100 (53%), Positives = 71/100 (71%)
Query: 12 IIDEVHLLHGDRGPV-IEA--LVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLL 68
+ +EV + +G+ PV E + + L ++GQ FKG+K LNRIQS+V++TAY+TNEN+L
Sbjct: 438 LYEEVRIPYGEPMPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNTNENML 497
Query: 69 ICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
ICAPTGAGKTN+AMLTI H+I+QH QG N YV
Sbjct: 498 ICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYV 537
Score = 234 (87.4 bits), Expect = 1.1e-64, Sum P(4) = 1.1e-64
Identities = 63/238 (26%), Positives = 117/238 (49%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L+D+LNAE+A GTI + +A+ +++++Y R+ +NP Y + +V+ D + + + L
Sbjct: 1732 LSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYSLG--DVSQD-SINKFLSHL 1788
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
I + L+ +H I R + GR AS YY+KH +++F + + +LS
Sbjct: 1789 IGQSLVELELSHCIEVGEDNRTIEPLTCGRIASYYYLKHKTVKMFKDRLKPECSTEELLS 1848
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGS-ENVHGKVNILLQTLLSRGRVNS 434
++S A E+ L VR E H + L + C I + S ++ H K ++LLQ LSR +
Sbjct: 1849 ILSDAEEYTDLPVRHNEDHTNNELAK-CLPIELNPHSFDSPHTKAHLLLQAHLSRAMLPC 1907
Query: 435 FSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQI 492
+D + V +R+ +A+ ++ + + M +W ++ L I
Sbjct: 1908 PDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTVLNITHLIQMVIQGRWLKDSSLLTI 1965
Score = 198 (74.8 bits), Expect = 1.6e-33, Sum P(6) = 1.6e-33
Identities = 51/135 (37%), Positives = 75/135 (55%)
Query: 149 FTEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
F H+ KGTE Y+ K YV I DVLQ+ GRAGRPQ++ G A I+ K + Y
Sbjct: 1656 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYK 1715
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVAL 266
L P+ES+ + L+D+LNAE+A GTI + +A+ + I + F L N + +L
Sbjct: 1716 KFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDY-ITWTYFFRRLIMN-PSYYSL 1773
Query: 267 GTIGNIDEAVRWLSY 281
G + D ++LS+
Sbjct: 1774 GDVSQ-DSINKFLSH 1787
Score = 156 (60.0 bits), Expect = 2.8e-289, Sum P(4) = 2.8e-289
Identities = 29/38 (76%), Positives = 37/38 (97%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
DVAL+++VKLLI+DEVHLLH DRGPV+E++VARTLRQ+
Sbjct: 599 DVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQV 636
Score = 138 (53.6 bits), Expect = 2.7e-268, Sum P(4) = 2.7e-268
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 49 LNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
L + ++LV + + + +L+C T A N+ AH + + +GT++Y AK G +V
Sbjct: 788 LRQDRNLVENLFSNGHIKVLVCTATLAWGVNLP----AHAV---VIKGTQIYAAKRGSFV 840
Query: 109 HIGILDVLQIFGRAGRPQYN 128
+GILDV+QIFGRAGRPQ++
Sbjct: 841 DLGILDVMQIFGRAGRPQFD 860
Score = 98 (39.6 bits), Expect = 1.0e-28, Sum P(5) = 1.0e-28
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGR 134
I +GTE Y+ K YV I DVLQ+ GRAGRPQ++ D G+
Sbjct: 1662 IIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFD--DQGK 1701
Score = 98 (39.6 bits), Expect = 4.4e-23, Sum P(4) = 4.4e-23
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 12 IIDEVHLLHGDRGPV-IEALVARTL--RQIGQEVFKGVKSL---NRIQSLVYDTAYHTNE 65
II+ HL+ +R P E L + L +G + ++ + + N +Q+ ++ T YHT+
Sbjct: 1285 IINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDC 1344
Query: 66 NLLICAPTGAGKTNVAMLTI 85
N+L+ APTG+GKT A L I
Sbjct: 1345 NVLLGAPTGSGKTVAAELAI 1364
Score = 92 (37.4 bits), Expect = 1.8e-22, Sum P(4) = 1.8e-22
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V +LIIDE+HLL +RGPV+E +V+RT
Sbjct: 1448 VNILIIDEIHLLGEERGPVLEVIVSRT 1474
Score = 90 (36.7 bits), Expect = 2.1e-37, Sum P(6) = 2.1e-37
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE----HMTKG 156
++++DLGRTAS++YIK+N IE F E H T+G
Sbjct: 977 FSSTDLGRTASHFYIKYNTIETFNELFDAHKTEG 1010
Score = 62 (26.9 bits), Expect = 5.3e-48, Sum P(3) = 5.3e-48
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 847 FISSYTKRNVRLVGLSTA--LANAKDLATWLNITKQGMYNFRPSVRPVPLEVHIS 899
F+SS +R RL L LA +D WLN+ +Q M N +VR L++ ++
Sbjct: 1562 FVSS--RRQTRLTALELIAFLATEEDPKQWLNMDEQEMDNIIGTVRDSNLKLTLA 1614
Score = 59 (25.8 bits), Expect = 8.6e-15, Sum P(5) = 8.6e-15
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 133 GRTASNYYIKHNDIELFTEHM 153
GR AS YY+KH +++F + +
Sbjct: 1817 GRIASYYYLKHKTVKMFKDRL 1837
Score = 43 (20.2 bits), Expect = 2.8e-289, Sum P(4) = 2.8e-289
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 38 IGQEVFKGVKSLNRIQSL 55
+GQ F G+KS N++Q L
Sbjct: 682 LGQ-TFLGIKSTNKMQQL 698
Score = 43 (20.2 bits), Expect = 5.1e-46, Sum P(3) = 5.1e-46
Identities = 18/71 (25%), Positives = 32/71 (45%)
Query: 406 IPIRGGSENV---HGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHR 462
I ++G +++ H +++I T R L +D EYV Q ++ + H
Sbjct: 2041 ISVKGSWDDLVEGHNELSISTLTADKRDENKWIKLHADQEYVLQVSLQRVHFGLPKGKHE 2100
Query: 463 NNAIMAARFLK 473
N+A+ RF K
Sbjct: 2101 NHAV-TPRFPK 2110
Score = 38 (18.4 bits), Expect = 1.1e-64, Sum P(4) = 1.1e-64
Identities = 17/80 (21%), Positives = 31/80 (38%)
Query: 834 RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVP 893
R PV+ V +S + + L +ST A+ +D W+ + Y + S++ V
Sbjct: 2033 RLPVINVGISVKGSWDDLVEGHNEL-SISTLTADKRDENKWIKLHADQEYVLQVSLQRVH 2091
Query: 894 LEVHISGFPGKQYCPRMAKM 913
+ PR K+
Sbjct: 2092 FGLPKGKHENHAVTPRFPKL 2111
Score = 38 (18.4 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 620 KSEESLIMTIPLSDPLPNQYL 640
+S +S+I + LS LPN YL
Sbjct: 637 ESTQSMIRILGLSATLPN-YL 656
>UNIPROTKB|E1BNG3 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9913 "Bos taurus" [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:DAAA02026160 EMBL:DAAA02026161
EMBL:DAAA02026162 EMBL:DAAA02026163 EMBL:DAAA02026164
EMBL:DAAA02026165 EMBL:DAAA02026166 EMBL:DAAA02026167
EMBL:DAAA02026168 EMBL:DAAA02026169 EMBL:DAAA02026170
EMBL:DAAA02026171 EMBL:DAAA02026172 EMBL:DAAA02026173
EMBL:DAAA02026174 EMBL:DAAA02026175 EMBL:DAAA02026176
EMBL:DAAA02026177 EMBL:DAAA02026178 EMBL:DAAA02026179
EMBL:DAAA02026180 EMBL:DAAA02026181 EMBL:DAAA02026182
EMBL:DAAA02026183 EMBL:DAAA02026184 EMBL:DAAA02026185
EMBL:DAAA02026186 EMBL:DAAA02026187 EMBL:DAAA02026188
EMBL:DAAA02026189 EMBL:DAAA02026190 EMBL:DAAA02026191
EMBL:DAAA02026192 EMBL:DAAA02026193 EMBL:DAAA02026194
EMBL:DAAA02026195 EMBL:DAAA02026196 EMBL:DAAA02026197
EMBL:DAAA02026198 EMBL:DAAA02026199 IPI:IPI00689177
RefSeq:NP_001193047.1 UniGene:Bt.26262 PRIDE:E1BNG3
Ensembl:ENSBTAT00000027294 GeneID:538416 KEGG:bta:538416 CTD:10973
GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC NextBio:20877349
GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 Uniprot:E1BNG3
Length = 2201
Score = 2310 (818.2 bits), Expect = 1.2e-296, Sum P(3) = 1.2e-296
Identities = 438/732 (59%), Positives = 558/732 (76%)
Query: 252 FVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQH 311
F+ +LADNLNAE+ALGT+ N++EAV+W+SY+YL+VRMR NP YGIS+ DP L +H
Sbjct: 890 FLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQIDPTLAKH 949
Query: 312 RTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDV 371
R L+ + LDKA MIRF RT + TDLGRTAS+YYIK+N IE F E +
Sbjct: 950 REQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTES 1009
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
I +++S+A EF+Q+KVR+EE+ ELD L CE+ GG EN +GK+NILLQT +SRG
Sbjct: 1010 DIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSAPGGVENSYGKINILLQTYISRGE 1069
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
V+SFSL+SD YV QN RI+RALFEI L + M R L + + + + W +PLRQ
Sbjct: 1070 VDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQ 1129
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI 551
+L P IL ++E++ LTV+ L++M EI ++L ++G KVKQC +I
Sbjct: 1130 FS----------VLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQI 1179
Query: 552 PLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFL 611
P + +E+ + PITRTVL++ L+I +FSWND+ T EP+WIWVEDP +D IYHSEYFL
Sbjct: 1180 PSVTMEASIQPITRTVLRVTLSISPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFL 1239
Query: 612 LSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPH 671
+ KKQVI+K + L+ TIP+ +PLP+QY IRA+SDR+LG+ ++F+HLI+PE HPPH
Sbjct: 1240 VLKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPH 1299
Query: 672 TNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAA 731
T LL+LQPLPV+AL YE+LY FSHFNP+QTQIFH LYHTD NVLLGAPTGSGKT+AA
Sbjct: 1300 TELLDLQPLPVTALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAA 1359
Query: 732 EITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791
E+ FRVF + P +K VYIAPLKALV+ER+ DWKV+ E +L KKV+ELTGDVTPD+++I+
Sbjct: 1360 ELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIA 1419
Query: 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSY 851
A +IVTTPEKWDGVSRSWQNRNYV+ V ++IIDEIHLLGE+RGPVLEVIVSR NFISS+
Sbjct: 1420 KADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSH 1479
Query: 852 TKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMA 911
T++ VR+VGLSTALANA+DLA WLNI + G++NFRPSVRPVPLEVHI GFPG+ YCPRMA
Sbjct: 1480 TEKPVRIVGLSTALANARDLADWLNIRQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMA 1539
Query: 912 KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNI 971
MNKP + AI+ HSP KPV+IFVSSRRQTRLTA++LI LA E +PK W++ + EM+NI
Sbjct: 1540 SMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENI 1599
Query: 972 VDNIKDSNLKLT 983
+ I+DSNLKLT
Sbjct: 1600 IGTIRDSNLKLT 1611
Score = 383 (139.9 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 106/306 (34%), Positives = 160/306 (52%)
Query: 654 QHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHT 713
+++ ++ + +P P E +P+ + L + + N IQ+ +F Y+T
Sbjct: 433 ENNKIYEEVKIPYTEPMPIGFEE-KPVYIQDLDEIGQLAFKGMRRLNRIQSIVFETAYNT 491
Query: 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQC--------PEAKVVYIAPLKALVKERVADWK 765
+ N+L+ APTG+GKT A +T +Q E K+VY+AP+KAL E +
Sbjct: 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFS 551
Query: 766 VKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR-SWQNRNYVQSVALIII 824
+ E L V ELTGD+ I ++VTTPEKWD V+R S + Q V L+I+
Sbjct: 552 KRLEP-LGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLIL 610
Query: 825 DEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ-GMY 883
DE+HLL EDRGPVLE IV+R T+ +R++GLS L N D+AT+L++ G++
Sbjct: 611 DEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLF 670
Query: 884 NFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAI-KQHSPEKPVMIFVSSRRQTRL 942
F RPVPL G ++ M++ Y ++ KQ VM+FV +R T
Sbjct: 671 FFDGRFRPVPLGQTFLGIKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVR 730
Query: 943 TAIDLI 948
TA+ LI
Sbjct: 731 TAMSLI 736
Score = 334 (122.6 bits), Expect = 1.2e-296, Sum P(3) = 1.2e-296
Identities = 63/104 (60%), Positives = 82/104 (78%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y AK G +V +GILDV+QIFGRAGRPQ++ G IIT H+KL+HYLSLLT Q P
Sbjct: 826 KGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNP 885
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
IES F+ +LADNLNAE+ALGT+ N++EAV+W+ +Y+ AN
Sbjct: 886 IESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRAN 929
Score = 248 (92.4 bits), Expect = 5.7e-66, Sum P(3) = 5.7e-66
Identities = 65/243 (26%), Positives = 120/243 (49%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L+D+LNAE+A GTI + +A+ +++++Y R+ +NP Y +S +V+ D + + + L
Sbjct: 1731 LSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLS--DVSHD-SVNKFLSNL 1787
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
+E + L+ ++ I R + GR AS YY+KH +++F E + +LS
Sbjct: 1788 VEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKERLKPECGTEELLS 1847
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGS-ENVHGKVNILLQTLLSRGRVNS 434
++S A E+ L VR E H L + C + S ++ H K ++LLQ LSR +
Sbjct: 1848 ILSDAEEYTDLPVRHNEDHMNSELAK-CLPLESNPHSFDSPHTKAHLLLQAHLSRTMLPC 1906
Query: 435 FSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKL 494
+D + V +R+ +A+ ++ H+ + M +W ++ L I
Sbjct: 1907 PDYDTDTKTVLDQALRVCQAMLDVAAHQGWLVTVLNITSLVQMVIQGRWLKDSSLLTIPH 1966
Query: 495 VTN 497
+ N
Sbjct: 1967 IEN 1969
Score = 246 (91.7 bits), Expect = 1.2e-296, Sum P(3) = 1.2e-296
Identities = 51/100 (51%), Positives = 70/100 (70%)
Query: 12 IIDEVHLLHGDRGPV-IEA--LVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLL 68
I +EV + + + P+ E + + L +IGQ FKG++ LNRIQS+V++TAY+TNEN+L
Sbjct: 437 IYEEVKIPYTEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIVFETAYNTNENML 496
Query: 69 ICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
ICAPTGAGKTN+AMLT+ H+I+QH QG N YV
Sbjct: 497 ICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYV 536
Score = 194 (73.4 bits), Expect = 5.7e-34, Sum P(5) = 5.7e-34
Identities = 44/112 (39%), Positives = 62/112 (55%)
Query: 149 FTEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
F H+ KGTE Y+ K YV I DVLQ+ GRAGRPQ++ G A I+ K + Y
Sbjct: 1655 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYK 1714
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEA---VRWLIIYINFVAN 255
L P+ES+ + L+D+LNAE+A GTI + +A + W + + N
Sbjct: 1715 KFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMN 1766
Score = 156 (60.0 bits), Expect = 1.9e-290, Sum P(4) = 1.9e-290
Identities = 29/38 (76%), Positives = 37/38 (97%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
DVAL+++VKLLI+DEVHLLH DRGPV+E++VARTLRQ+
Sbjct: 598 DVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQV 635
Score = 138 (53.6 bits), Expect = 9.1e-270, Sum P(4) = 9.1e-270
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 49 LNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
L + ++LV + + +L+C T A N+ AH + I +GT++Y AK G +V
Sbjct: 787 LRQDRNLVESLFSNGHIKVLVCTATLAWGVNLP----AHAV---IIKGTQIYAAKRGSFV 839
Query: 109 HIGILDVLQIFGRAGRPQYN 128
+GILDV+QIFGRAGRPQ++
Sbjct: 840 DLGILDVMQIFGRAGRPQFD 859
Score = 102 (41.0 bits), Expect = 4.7e-26, Sum P(3) = 4.7e-26
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 12 IIDEVHLLHGDRGPV-IEALVARTL--RQIGQEVFKGVKSL---NRIQSLVYDTAYHTNE 65
II+ HL+ +R P E L + L +G E ++ + + N +Q+ ++ T YHT+
Sbjct: 1284 IINFQHLILPERHPPHTELLDLQPLPVTALGCEAYEALYNFSHFNPVQTQIFHTLYHTDC 1343
Query: 66 NLLICAPTGAGKTNVAMLTI 85
N+L+ APTG+GKT A L I
Sbjct: 1344 NVLLGAPTGSGKTVAAELAI 1363
Score = 98 (39.6 bits), Expect = 3.2e-31, Sum P(4) = 3.2e-31
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGR 134
I +GTE Y+ K YV I DVLQ+ GRAGRPQ++ D G+
Sbjct: 1661 IIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFD--DQGK 1700
Score = 91 (37.1 bits), Expect = 6.5e-25, Sum P(3) = 6.5e-25
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V +LIIDE+HLL +RGPV+E +V+RT
Sbjct: 1447 VTILIIDEIHLLGEERGPVLEVIVSRT 1473
Score = 90 (36.7 bits), Expect = 8.8e-40, Sum P(5) = 8.8e-40
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE 151
++++DLGRTAS+YYIK+N IE F E
Sbjct: 976 FSSTDLGRTASHYYIKYNTIETFNE 1000
Score = 65 (27.9 bits), Expect = 2.8e-16, Sum P(4) = 2.8e-16
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 133 GRTASNYYIKHNDIELFTEHMTK--GTE 158
GR AS YY+KH +++F E + GTE
Sbjct: 1816 GRIASYYYLKHQTVKMFKERLKPECGTE 1843
Score = 58 (25.5 bits), Expect = 4.1e-46, Sum P(3) = 4.1e-46
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 847 FISSYTKRNVRLVGLSTA--LANAKDLATWLNITKQGMYNFRPSVRPVPLEVHIS 899
F+SS +R RL L LA +D WLN+ ++ M N ++R L++ ++
Sbjct: 1561 FVSS--RRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIGTIRDSNLKLTLA 1613
Score = 45 (20.9 bits), Expect = 1.9e-290, Sum P(4) = 1.9e-290
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 38 IGQEVFKGVKSLNRIQSL 55
+GQ F G+KS N++Q L
Sbjct: 681 LGQ-TFLGIKSANKVQQL 697
Score = 39 (18.8 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 457 EITLHRNNAIMAAR 470
E+ +HR A+M AR
Sbjct: 371 ELRIHREQALMNAR 384
Score = 38 (18.4 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 620 KSEESLIMTIPLSDPLPNQYL 640
+S +S+I + LS LPN YL
Sbjct: 636 ESTQSMIRILGLSATLPN-YL 655
>UNIPROTKB|F6Y2F0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 GO:GO:0008026
Ensembl:ENSCAFT00000005717 EMBL:AAEX03008562 RefSeq:XP_854167.1
ProteinModelPortal:F6Y2F0 GeneID:475008 KEGG:cfa:475008 OMA:XAVYIAP
Uniprot:F6Y2F0
Length = 2202
Score = 2302 (815.4 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 435/732 (59%), Positives = 558/732 (76%)
Query: 252 FVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQH 311
F+ +LADNLNAE+ALGT+ N++EAV+W+SY+YL+VRMR NP YGIS+ DP L +H
Sbjct: 890 FLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQVDPTLAKH 949
Query: 312 RTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDV 371
R L+ + LDKA MIRF RT + TDLGRTAS+YYIK+N IE F E +
Sbjct: 950 REQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNEFFDAHKTES 1009
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
I +++S+A EF+Q+KVR+EE+ ELD L CE+ GG EN +GK+NILLQT +SRG
Sbjct: 1010 DIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELAAPGGVENSYGKINILLQTYISRGE 1069
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
++SFSL+SD YV QN RI+RALFEI L + M R L + + + + W +PLRQ
Sbjct: 1070 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWASPLRQ 1129
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI 551
+L P IL ++E++ LTV+ L++M EI +ML ++G KVKQC +I
Sbjct: 1130 FS----------VLPPHILTRLEEKNLTVDKLKDMRKDEIGHMLHHVNIGLKVKQCVHQI 1179
Query: 552 PLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFL 611
P + +E+ + PITRTVL++ L+I +F+WND+ T EP+WIWVEDP +D IYHSEYFL
Sbjct: 1180 PSVTMEASIQPITRTVLRVTLSICPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFL 1239
Query: 612 LSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPH 671
+ KKQVI+K + L+ TIP+ +PLP+QY IRA+SDR+LG+ ++F+HLI+PE HPPH
Sbjct: 1240 VLKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPH 1299
Query: 672 TNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAA 731
T LL+LQPLP++AL YE+LY FSHFNP+QTQIFH LYHTD NVLLGAPTGSGKT+AA
Sbjct: 1300 TELLDLQPLPITALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAA 1359
Query: 732 EITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791
E+ FRVF + P +K VYIAPLKALV+ER+ DWKV+ E +L KKV+ELTGDVTPD+++I+
Sbjct: 1360 ELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIA 1419
Query: 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSY 851
A +IVTTPEKWDGVSRSWQNRNYV+ V ++IIDEIHLLGE+RGPVLEVIVSR NFISS+
Sbjct: 1420 KADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSH 1479
Query: 852 TKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMA 911
T++ VR+VGLSTALANA+DLA WLNI + G++NFRPSVRPVPLEVHI GFPG+ YCPRMA
Sbjct: 1480 TEKPVRIVGLSTALANARDLADWLNIHQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMA 1539
Query: 912 KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNI 971
MNKP + AI+ HSP KPV+IFVSSRRQTRLTA++LI LA E +PK W++ + EM+NI
Sbjct: 1540 SMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENI 1599
Query: 972 VDNIKDSNLKLT 983
+ ++DSNLKLT
Sbjct: 1600 IGTLRDSNLKLT 1611
Score = 383 (139.9 bits), Expect = 4.8e-31, P = 4.8e-31
Identities = 106/306 (34%), Positives = 160/306 (52%)
Query: 654 QHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHT 713
+++ ++ + +P P E +P+ + L + + N IQ+ +F Y+T
Sbjct: 433 ENNKMYEEVKIPYSEPMPIGFEE-KPVYIQDLDEIGQLAFKGMRRLNRIQSIVFETAYNT 491
Query: 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQC--------PEAKVVYIAPLKALVKERVADWK 765
+ N+L+ APTG+GKT A +T +Q E K+VY+AP+KAL E +
Sbjct: 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFS 551
Query: 766 VKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR-SWQNRNYVQSVALIII 824
+ E L V ELTGD+ I ++VTTPEKWD V+R S + Q V L+I+
Sbjct: 552 KRLEP-LGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLIL 610
Query: 825 DEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ-GMY 883
DE+HLL EDRGPVLE IV+R T+ +R++GLS L N D+AT+L++ G++
Sbjct: 611 DEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLF 670
Query: 884 NFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAI-KQHSPEKPVMIFVSSRRQTRL 942
F RPVPL G ++ M++ Y ++ KQ VM+FV +R T
Sbjct: 671 YFDGRFRPVPLGQTFLGVKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVR 730
Query: 943 TAIDLI 948
TA+ LI
Sbjct: 731 TAMSLI 736
Score = 331 (121.6 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 62/104 (59%), Positives = 82/104 (78%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y AK G +V +GILDV+QIFGRAGRPQ++ G IIT H+KL+HYL+LLT Q P
Sbjct: 826 KGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDRFGEGIIITTHDKLSHYLTLLTQQNP 885
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
IES F+ +LADNLNAE+ALGT+ N++EAV+W+ +Y+ AN
Sbjct: 886 IESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRAN 929
Score = 245 (91.3 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 14 DEVHLLHGDRGPV-IEA--LVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLIC 70
+EV + + + P+ E + + L +IGQ FKG++ LNRIQS+V++TAY+TNEN+LIC
Sbjct: 439 EEVKIPYSEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIVFETAYNTNENMLIC 498
Query: 71 APTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
APTGAGKTN+AMLT+ H+I+QH QG N YV
Sbjct: 499 APTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYV 536
Score = 243 (90.6 bits), Expect = 1.2e-64, Sum P(4) = 1.2e-64
Identities = 64/238 (26%), Positives = 120/238 (50%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L+D+LNAE+A GTI + +A+ +++++Y R+ +NP Y +S +V+ D + + ++L
Sbjct: 1731 LSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLS--DVSHD-SVNKFLSSL 1787
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
+E + L+ ++ I R + GR AS YY+KH +++F E + +LS
Sbjct: 1788 VEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKERLKPECGTEELLS 1847
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGS-ENVHGKVNILLQTLLSRGRVNS 434
++S A E+ L VR E H L + C + S ++ H K ++LLQ LSR +
Sbjct: 1848 ILSDAEEYTDLPVRHNEDHMNSELAK-CLPLESNPHSFDSPHTKAHLLLQAHLSRTMLPC 1906
Query: 435 FSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQI 492
+D + V +R+ +A+ ++ ++ + A M +W ++ L I
Sbjct: 1907 PDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTALNITNLVQMVIQGRWLKDSSLLSI 1964
Score = 194 (73.4 bits), Expect = 8.1e-34, Sum P(7) = 8.1e-34
Identities = 44/112 (39%), Positives = 62/112 (55%)
Query: 149 FTEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
F H+ KGTE Y+ K YV I DVLQ+ GRAGRPQ++ G A I+ K + Y
Sbjct: 1655 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYK 1714
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEA---VRWLIIYINFVAN 255
L P+ES+ + L+D+LNAE+A GTI + +A + W + + N
Sbjct: 1715 KFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMN 1766
Score = 156 (60.0 bits), Expect = 2.2e-289, Sum P(4) = 2.2e-289
Identities = 29/38 (76%), Positives = 37/38 (97%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
DVAL+++VKLLI+DEVHLLH DRGPV+E++VARTLRQ+
Sbjct: 598 DVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQV 635
Score = 139 (54.0 bits), Expect = 3.9e-269, Sum P(4) = 3.9e-269
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 49 LNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
L + ++LV + + + +L+C T A N+ AH + I +GT++Y AK G +V
Sbjct: 787 LRQDRNLVENLFSNGHIKVLVCTATLAWGVNLP----AHAV---IIKGTQIYAAKRGSFV 839
Query: 109 HIGILDVLQIFGRAGRPQYN 128
+GILDV+QIFGRAGRPQ++
Sbjct: 840 DLGILDVMQIFGRAGRPQFD 859
Score = 102 (41.0 bits), Expect = 2.3e-25, Sum P(4) = 2.3e-25
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 12 IIDEVHLLHGDRGPV-IEALVARTL--RQIGQEVFKGVKSL---NRIQSLVYDTAYHTNE 65
II+ HL+ +R P E L + L +G E ++ + + N +Q+ ++ T YHT+
Sbjct: 1284 IINFQHLILPERHPPHTELLDLQPLPITALGCEAYEALYNFSHFNPVQTQIFHTLYHTDC 1343
Query: 66 NLLICAPTGAGKTNVAMLTI 85
N+L+ APTG+GKT A L I
Sbjct: 1344 NVLLGAPTGSGKTVAAELAI 1363
Score = 98 (39.6 bits), Expect = 7.0e-31, Sum P(5) = 7.0e-31
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGR 134
I +GTE Y+ K YV I DVLQ+ GRAGRPQ++ D G+
Sbjct: 1661 IIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFD--DQGK 1700
Score = 91 (37.1 bits), Expect = 3.1e-24, Sum P(4) = 3.1e-24
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V +LIIDE+HLL +RGPV+E +V+RT
Sbjct: 1447 VTILIIDEIHLLGEERGPVLEVIVSRT 1473
Score = 90 (36.7 bits), Expect = 1.1e-39, Sum P(6) = 1.1e-39
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE 151
++++DLGRTAS+YYIK+N IE F E
Sbjct: 976 FSSTDLGRTASHYYIKYNTIETFNE 1000
Score = 65 (27.9 bits), Expect = 4.6e-16, Sum P(6) = 4.6e-16
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 133 GRTASNYYIKHNDIELFTEHMTK--GTE 158
GR AS YY+KH +++F E + GTE
Sbjct: 1816 GRIASYYYLKHQTVKMFKERLKPECGTE 1843
Score = 56 (24.8 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 847 FISSYTKRNVRLVGLSTA--LANAKDLATWLNITKQGMYNFRPSVRPVPLEVHIS 899
F+SS +R RL L LA +D WLN+ ++ M N ++R L++ ++
Sbjct: 1561 FVSS--RRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIGTLRDSNLKLTLA 1613
Score = 47 (21.6 bits), Expect = 1.2e-64, Sum P(4) = 1.2e-64
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 626 IMTIPLSDP-LPNQYL--IRAMSDRYLGSVVQHSMSFKHLIVPE 666
+++I P LP +Y+ + MSD YLG Q+ + HL V E
Sbjct: 2141 VVSISFYTPELPGRYIYTLYLMSDCYLGLDQQYDL---HLHVTE 2181
Score = 46 (21.3 bits), Expect = 2.2e-289, Sum P(4) = 2.2e-289
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 38 IGQEVFKGVKSLNRIQSL 55
+GQ F GVKS N++Q L
Sbjct: 681 LGQ-TFLGVKSANKVQQL 697
Score = 38 (18.4 bits), Expect = 7.6e-15, Sum P(3) = 7.6e-15
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 620 KSEESLIMTIPLSDPLPNQYL 640
+S +S+I + LS LPN YL
Sbjct: 636 ESTQSMIRILGLSATLPN-YL 655
Score = 37 (18.1 bits), Expect = 2.9e-43, Sum P(4) = 2.9e-43
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 416 HGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLK 473
HG+++I T R L +D EYV Q ++ + F ++A+ RF K
Sbjct: 2053 HGELSITTLTSDKRNDNRWIRLHADQEYVLQVSLQRVHFGFHKGKQDSHAV-TPRFPK 2109
>UNIPROTKB|Q8N3C0 [details] [associations]
symbol:ASCC3 "Activating signal cointegrator 1 complex
subunit 3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0006307
GO:GO:0008283 EMBL:CH471051 GO:GO:0006351 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:10973
KO:K01529 OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AL834463 EMBL:AK315197
EMBL:AL591585 EMBL:AL121965 EMBL:AL133338 EMBL:AL356122 EMBL:Z86062
EMBL:BC050681 EMBL:BC125211 EMBL:BC125212 EMBL:BC026066
EMBL:AY013288 EMBL:AJ223948 IPI:IPI00430472 RefSeq:NP_006819.2
RefSeq:NP_071374.1 UniGene:Hs.486031 ProteinModelPortal:Q8N3C0
SMR:Q8N3C0 IntAct:Q8N3C0 MINT:MINT-1183138 STRING:Q8N3C0
PhosphoSite:Q8N3C0 DMDM:158518649 PaxDb:Q8N3C0 PRIDE:Q8N3C0
DNASU:10973 Ensembl:ENST00000369143 Ensembl:ENST00000369162
Ensembl:ENST00000522650 GeneID:10973 KEGG:hsa:10973 UCSC:uc003pqk.3
GeneCards:GC06M100956 H-InvDB:HIX0021958 HGNC:HGNC:18697
HPA:HPA031608 HPA:HPA031609 HPA:HPA031610 MIM:614217
neXtProt:NX_Q8N3C0 PharmGKB:PA134890913 eggNOG:COG1204
HOGENOM:HOG000152625 HOVERGEN:HBG051896 InParanoid:Q8N3C0
PhylomeDB:Q8N3C0 ChiTaRS:ASCC3 GenomeRNAi:10973 NextBio:41694
ArrayExpress:Q8N3C0 Bgee:Q8N3C0 CleanEx:HS_ASCC3
Genevestigator:Q8N3C0 GermOnline:ENSG00000112249 Uniprot:Q8N3C0
Length = 2202
Score = 2302 (815.4 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 437/732 (59%), Positives = 558/732 (76%)
Query: 252 FVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQH 311
F+ +LADNLNAE+ALGT+ N++EAV+W+SY+YL+VRMR NP YGIS+ DP L +H
Sbjct: 890 FLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQIDPTLRKH 949
Query: 312 RTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDV 371
R L+ + LDKA MIRF RT + TDLGRTAS+YYIK+N IE F E +
Sbjct: 950 REQLVIEVGRKLDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1009
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
I +++S+A EF+Q+KVR+EE+ ELD L CE+ GG EN +GK+NILLQT +SRG
Sbjct: 1010 DIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGE 1069
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
++SFSL+SD YV QN RI+RALFEI L + M R L + + + + W +PLRQ
Sbjct: 1070 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQ 1129
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI 551
IL P IL ++E++ LTV+ L++M EI ++L ++G KVKQC +I
Sbjct: 1130 FS----------ILPPHILTRLEEKKLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQI 1179
Query: 552 PLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFL 611
P + +E+ + PITRTVL++ L+I A+F+WND+ T EP+WIWVEDP +D IYHSEYFL
Sbjct: 1180 PSVMMEASIQPITRTVLRVTLSIYADFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFL 1239
Query: 612 LSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPH 671
KKQVI+K + L+ TIP+ +PLP+QY IRA+SDR+LG+ ++F+HLI+PE HPPH
Sbjct: 1240 ALKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPH 1299
Query: 672 TNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAA 731
T LL+LQPLP++AL YE+LY FSHFNP+QTQIFH LYHTD NVLLGAPTGSGKT+AA
Sbjct: 1300 TELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAA 1359
Query: 732 EITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791
E+ FRVF + P +K VYIAPLKALV+ER+ DWKV+ E +L KKV+ELTGDVTPD+++I+
Sbjct: 1360 ELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIA 1419
Query: 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSY 851
A +IVTTPEKWDGVSRSWQNRNYVQ V ++IIDEIHLLGE+RGPVLEVIVSR NFISS+
Sbjct: 1420 KADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSH 1479
Query: 852 TKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMA 911
T++ VR+VGLSTALANA+DLA WLNI + G++NFRPSVRPVPLEVHI GFPG+ YCPRMA
Sbjct: 1480 TEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMA 1539
Query: 912 KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNI 971
MNKP + AI+ HSP KPV+IFVSSRRQTRLTA++LI LA E +PK W++ + EM+NI
Sbjct: 1540 SMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENI 1599
Query: 972 VDNIKDSNLKLT 983
+ ++DSNLKLT
Sbjct: 1600 IATVRDSNLKLT 1611
Score = 381 (139.2 bits), Expect = 7.9e-31, P = 7.9e-31
Identities = 108/309 (34%), Positives = 163/309 (52%)
Query: 654 QHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHT 713
+++ ++ + +P P + E +P+ + L + + N IQ+ +F Y+T
Sbjct: 433 ENNKLYEEVRIPYSEPMPLSFEE-KPVYIQDLDEIGQLAFKGMKRLNRIQSIVFETAYNT 491
Query: 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQC--------PEAKVVYIAPLKALVKERVADWK 765
+ N+L+ APTG+GKT A +T +Q E K+VY+AP+KAL E + D+
Sbjct: 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAE-MTDY- 549
Query: 766 VKFEARLKKK---VVELTGDVTPDIQAISSASVIVTTPEKWDGVSR-SWQNRNYVQSVAL 821
F RL+ V ELTGD+ I ++VTTPEKWD V+R S + Q V L
Sbjct: 550 --FSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRL 607
Query: 822 IIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ- 880
+I+DE+HLL EDRGPVLE IV+R T+ +R++GLS L N D+AT+L++
Sbjct: 608 LILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYI 667
Query: 881 GMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIY-TAIKQHSPEKPVMIFVSSRRQ 939
G++ F RPVPL G ++ M++ Y +KQ VM+FV +R
Sbjct: 668 GLFFFDGRFRPVPLGQTFLGIKCANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVHARNA 727
Query: 940 TRLTAIDLI 948
T TA+ LI
Sbjct: 728 TVRTAMSLI 736
Score = 327 (120.2 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 61/104 (58%), Positives = 82/104 (78%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y AK G +V +GILDV+QIFGRAGRPQ++ G IIT H+KL+HYL+LLT + P
Sbjct: 826 KGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNP 885
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
IES F+ +LADNLNAE+ALGT+ N++EAV+W+ +Y+ AN
Sbjct: 886 IESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRAN 929
Score = 249 (92.7 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 50/100 (50%), Positives = 70/100 (70%)
Query: 12 IIDEVHLLHGDRGPVI---EALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLL 68
+ +EV + + + P+ + + + L +IGQ FKG+K LNRIQS+V++TAY+TNEN+L
Sbjct: 437 LYEEVRIPYSEPMPLSFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIVFETAYNTNENML 496
Query: 69 ICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
ICAPTGAGKTN+AMLT+ H+I+QH QG N YV
Sbjct: 497 ICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYV 536
Score = 239 (89.2 bits), Expect = 2.2e-63, Sum P(4) = 2.2e-63
Identities = 72/274 (26%), Positives = 132/274 (48%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L+D+LNAE+A GTI + +A+ +++++Y R+ +NP Y + +V+ D + + + L
Sbjct: 1731 LSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLG--DVSHD-SVNKFLSHL 1787
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
IE + L+ ++ I R + GR AS YY+KH +++F + + +LS
Sbjct: 1788 IEKSLIELELSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKDRLKPECSTEELLS 1847
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGS-ENVHGKVNILLQTLLSRGRVNS 434
++S A E+ L VR E H L + C I S ++ H K ++LLQ LSR +
Sbjct: 1848 ILSDAEEYTDLPVRHNEDHMNSELAK-CLPIESNPHSFDSPHTKAHLLLQAHLSRAMLPC 1906
Query: 435 FSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKL 494
+D + V +R+ +A+ ++ ++ + M +W ++ L +
Sbjct: 1907 PDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWLKDSSLLTLPN 1966
Query: 495 VTNRG-YQSPILKPDILNKIEQRGLT-VEDLREM 526
+ N + KP I+ RG T +E L E+
Sbjct: 1967 IENHHLHLFKKWKP-IMKGPHARGRTSIESLPEL 1999
Score = 197 (74.4 bits), Expect = 1.0e-34, Sum P(4) = 1.0e-34
Identities = 51/135 (37%), Positives = 75/135 (55%)
Query: 149 FTEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
F H+ KGTE Y+ K YV I DVLQ+ GRAGRPQ++ G A I+ K + Y
Sbjct: 1655 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYK 1714
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVAL 266
L P+ES+ + L+D+LNAE+A GTI + +A+ + I + F L N + L
Sbjct: 1715 KFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDY-ITWTYFFRRLIMN-PSYYNL 1772
Query: 267 GTIGNIDEAVRWLSY 281
G + + D ++LS+
Sbjct: 1773 GDVSH-DSVNKFLSH 1786
Score = 153 (58.9 bits), Expect = 8.4e-288, Sum P(4) = 8.4e-288
Identities = 28/38 (73%), Positives = 37/38 (97%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
DVAL+++V+LLI+DEVHLLH DRGPV+E++VARTLRQ+
Sbjct: 598 DVALSQIVRLLILDEVHLLHEDRGPVLESIVARTLRQV 635
Score = 139 (54.0 bits), Expect = 5.7e-268, Sum P(4) = 5.7e-268
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 49 LNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
L + ++LV + + + +L+C T A N+ AH + I +GT++Y AK G +V
Sbjct: 787 LRQDRNLVENLFSNGHIKVLVCTATLAWGVNLP----AHAV---IIKGTQIYAAKRGSFV 839
Query: 109 HIGILDVLQIFGRAGRPQYN 128
+GILDV+QIFGRAGRPQ++
Sbjct: 840 DLGILDVMQIFGRAGRPQFD 859
Score = 98 (39.6 bits), Expect = 1.6e-28, Sum P(5) = 1.6e-28
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGR 134
I +GTE Y+ K YV I DVLQ+ GRAGRPQ++ D G+
Sbjct: 1661 IIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFD--DQGK 1700
Score = 98 (39.6 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 12 IIDEVHLLHGDRGPV-IEALVARTL--RQIGQEVFKGVKSL---NRIQSLVYDTAYHTNE 65
II+ HL+ +R P E L + L +G + ++ + + N +Q+ ++ T YHT+
Sbjct: 1284 IINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDC 1343
Query: 66 NLLICAPTGAGKTNVAMLTI 85
N+L+ APTG+GKT A L I
Sbjct: 1344 NVLLGAPTGSGKTVAAELAI 1363
Score = 96 (38.9 bits), Expect = 4.9e-39, Sum P(4) = 4.9e-39
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 113 LDVLQIFGRAGRPQY-NTSDLGRTASNYYIKHNDIELFTE----HMTKG 156
LD Q+ R Y +++DLGRTAS+YYIK+N IE F E H T+G
Sbjct: 961 LDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1009
Score = 91 (37.1 bits), Expect = 5.4e-23, Sum P(4) = 5.4e-23
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V +LIIDE+HLL +RGPV+E +V+RT
Sbjct: 1447 VTILIIDEIHLLGEERGPVLEVIVSRT 1473
Score = 60 (26.2 bits), Expect = 7.1e-46, Sum P(3) = 7.1e-46
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 847 FISSYTKRNVRLVGLSTA--LANAKDLATWLNITKQGMYNFRPSVRPVPLEVHIS 899
F+SS +R RL L LA +D WLN+ ++ M N +VR L++ ++
Sbjct: 1561 FVSS--RRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIATVRDSNLKLTLA 1613
Score = 59 (25.8 bits), Expect = 3.5e-14, Sum P(5) = 3.5e-14
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 133 GRTASNYYIKHNDIELFTEHM 153
GR AS YY+KH +++F + +
Sbjct: 1816 GRIASYYYLKHQTVKMFKDRL 1836
Score = 39 (18.8 bits), Expect = 2.2e-63, Sum P(4) = 2.2e-63
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 859 VGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGK-QYCPRMAK 912
+ +ST A+ +D W+ + Y + S++ V H G P PR K
Sbjct: 2056 LSVSTLTADKRDDNKWIKLHADQEYVLQVSLQRVHFGFH-KGKPESCAVTPRFPK 2109
Score = 38 (18.4 bits), Expect = 8.4e-288, Sum P(4) = 8.4e-288
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 38 IGQEVFKGVKSLNRIQSL 55
+GQ F G+K N++Q L
Sbjct: 681 LGQ-TFLGIKCANKMQQL 697
Score = 38 (18.4 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 620 KSEESLIMTIPLSDPLPNQYL 640
+S +S+I + LS LPN YL
Sbjct: 636 ESTQSMIRILGLSATLPN-YL 655
>UNIPROTKB|E2QVY0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005794
GO:GO:0006307 GO:GO:0008283 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 Ensembl:ENSCAFT00000005717
Uniprot:E2QVY0
Length = 1925
Score = 2302 (815.4 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 435/732 (59%), Positives = 558/732 (76%)
Query: 252 FVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQH 311
F+ +LADNLNAE+ALGT+ N++EAV+W+SY+YL+VRMR NP YGIS+ DP L +H
Sbjct: 890 FLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQVDPTLAKH 949
Query: 312 RTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDV 371
R L+ + LDKA MIRF RT + TDLGRTAS+YYIK+N IE F E +
Sbjct: 950 REQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNEFFDAHKTES 1009
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
I +++S+A EF+Q+KVR+EE+ ELD L CE+ GG EN +GK+NILLQT +SRG
Sbjct: 1010 DIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELAAPGGVENSYGKINILLQTYISRGE 1069
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
++SFSL+SD YV QN RI+RALFEI L + M R L + + + + W +PLRQ
Sbjct: 1070 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWASPLRQ 1129
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI 551
+L P IL ++E++ LTV+ L++M EI +ML ++G KVKQC +I
Sbjct: 1130 FS----------VLPPHILTRLEEKNLTVDKLKDMRKDEIGHMLHHVNIGLKVKQCVHQI 1179
Query: 552 PLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFL 611
P + +E+ + PITRTVL++ L+I +F+WND+ T EP+WIWVEDP +D IYHSEYFL
Sbjct: 1180 PSVTMEASIQPITRTVLRVTLSICPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFL 1239
Query: 612 LSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPH 671
+ KKQVI+K + L+ TIP+ +PLP+QY IRA+SDR+LG+ ++F+HLI+PE HPPH
Sbjct: 1240 VLKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPH 1299
Query: 672 TNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAA 731
T LL+LQPLP++AL YE+LY FSHFNP+QTQIFH LYHTD NVLLGAPTGSGKT+AA
Sbjct: 1300 TELLDLQPLPITALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAA 1359
Query: 732 EITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791
E+ FRVF + P +K VYIAPLKALV+ER+ DWKV+ E +L KKV+ELTGDVTPD+++I+
Sbjct: 1360 ELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIA 1419
Query: 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSY 851
A +IVTTPEKWDGVSRSWQNRNYV+ V ++IIDEIHLLGE+RGPVLEVIVSR NFISS+
Sbjct: 1420 KADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSH 1479
Query: 852 TKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMA 911
T++ VR+VGLSTALANA+DLA WLNI + G++NFRPSVRPVPLEVHI GFPG+ YCPRMA
Sbjct: 1480 TEKPVRIVGLSTALANARDLADWLNIHQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMA 1539
Query: 912 KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNI 971
MNKP + AI+ HSP KPV+IFVSSRRQTRLTA++LI LA E +PK W++ + EM+NI
Sbjct: 1540 SMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENI 1599
Query: 972 VDNIKDSNLKLT 983
+ ++DSNLKLT
Sbjct: 1600 IGTLRDSNLKLT 1611
Score = 383 (139.9 bits), Expect = 4.0e-31, P = 4.0e-31
Identities = 106/306 (34%), Positives = 160/306 (52%)
Query: 654 QHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHT 713
+++ ++ + +P P E +P+ + L + + N IQ+ +F Y+T
Sbjct: 433 ENNKMYEEVKIPYSEPMPIGFEE-KPVYIQDLDEIGQLAFKGMRRLNRIQSIVFETAYNT 491
Query: 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQC--------PEAKVVYIAPLKALVKERVADWK 765
+ N+L+ APTG+GKT A +T +Q E K+VY+AP+KAL E +
Sbjct: 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFS 551
Query: 766 VKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR-SWQNRNYVQSVALIII 824
+ E L V ELTGD+ I ++VTTPEKWD V+R S + Q V L+I+
Sbjct: 552 KRLEP-LGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLIL 610
Query: 825 DEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ-GMY 883
DE+HLL EDRGPVLE IV+R T+ +R++GLS L N D+AT+L++ G++
Sbjct: 611 DEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLF 670
Query: 884 NFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAI-KQHSPEKPVMIFVSSRRQTRL 942
F RPVPL G ++ M++ Y ++ KQ VM+FV +R T
Sbjct: 671 YFDGRFRPVPLGQTFLGVKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVR 730
Query: 943 TAIDLI 948
TA+ LI
Sbjct: 731 TAMSLI 736
Score = 331 (121.6 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 62/104 (59%), Positives = 82/104 (78%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y AK G +V +GILDV+QIFGRAGRPQ++ G IIT H+KL+HYL+LLT Q P
Sbjct: 826 KGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDRFGEGIIITTHDKLSHYLTLLTQQNP 885
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
IES F+ +LADNLNAE+ALGT+ N++EAV+W+ +Y+ AN
Sbjct: 886 IESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRAN 929
Score = 245 (91.3 bits), Expect = 2.1e-295, Sum P(3) = 2.1e-295
Identities = 50/98 (51%), Positives = 69/98 (70%)
Query: 14 DEVHLLHGDRGPV-IEA--LVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLIC 70
+EV + + + P+ E + + L +IGQ FKG++ LNRIQS+V++TAY+TNEN+LIC
Sbjct: 439 EEVKIPYSEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIVFETAYNTNENMLIC 498
Query: 71 APTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
APTGAGKTN+AMLT+ H+I+QH QG N YV
Sbjct: 499 APTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYV 536
Score = 220 (82.5 bits), Expect = 7.9e-63, Sum P(3) = 7.9e-63
Identities = 58/197 (29%), Positives = 104/197 (52%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L+D+LNAE+A GTI + +A+ +++++Y R+ +NP Y +S +V+ D + + ++L
Sbjct: 1731 LSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLS--DVSHD-SVNKFLSSL 1787
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
+E + L+ ++ I R + GR AS YY+KH +++F E + +LS
Sbjct: 1788 VEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKERLKPECGTEELLS 1847
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGS-ENVHGKVNILLQTLLSRGRVNS 434
++S A E+ L VR E H L + C + S ++ H K ++LLQ LSR +
Sbjct: 1848 ILSDAEEYTDLPVRHNEDHMNSELAK-CLPLESNPHSFDSPHTKAHLLLQAHLSRTMLPC 1906
Query: 435 FSLVSDLEYVNQNVIRI 451
+D + V +R+
Sbjct: 1907 PDYDTDTKTVLDQALRV 1923
Score = 194 (73.4 bits), Expect = 1.7e-34, Sum P(5) = 1.7e-34
Identities = 44/112 (39%), Positives = 62/112 (55%)
Query: 149 FTEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
F H+ KGTE Y+ K YV I DVLQ+ GRAGRPQ++ G A I+ K + Y
Sbjct: 1655 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYK 1714
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEA---VRWLIIYINFVAN 255
L P+ES+ + L+D+LNAE+A GTI + +A + W + + N
Sbjct: 1715 KFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMN 1766
Score = 156 (60.0 bits), Expect = 2.2e-289, Sum P(4) = 2.2e-289
Identities = 29/38 (76%), Positives = 37/38 (97%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
DVAL+++VKLLI+DEVHLLH DRGPV+E++VARTLRQ+
Sbjct: 598 DVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQV 635
Score = 139 (54.0 bits), Expect = 3.9e-269, Sum P(4) = 3.9e-269
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 49 LNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
L + ++LV + + + +L+C T A N+ AH + I +GT++Y AK G +V
Sbjct: 787 LRQDRNLVENLFSNGHIKVLVCTATLAWGVNLP----AHAV---IIKGTQIYAAKRGSFV 839
Query: 109 HIGILDVLQIFGRAGRPQYN 128
+GILDV+QIFGRAGRPQ++
Sbjct: 840 DLGILDVMQIFGRAGRPQFD 859
Score = 102 (41.0 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 12 IIDEVHLLHGDRGPV-IEALVARTL--RQIGQEVFKGVKSL---NRIQSLVYDTAYHTNE 65
II+ HL+ +R P E L + L +G E ++ + + N +Q+ ++ T YHT+
Sbjct: 1284 IINFQHLILPERHPPHTELLDLQPLPITALGCEAYEALYNFSHFNPVQTQIFHTLYHTDC 1343
Query: 66 NLLICAPTGAGKTNVAMLTI 85
N+L+ APTG+GKT A L I
Sbjct: 1344 NVLLGAPTGSGKTVAAELAI 1363
Score = 98 (39.6 bits), Expect = 1.4e-28, Sum P(4) = 1.4e-28
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGR 134
I +GTE Y+ K YV I DVLQ+ GRAGRPQ++ D G+
Sbjct: 1661 IIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFD--DQGK 1700
Score = 91 (37.1 bits), Expect = 3.9e-22, Sum P(3) = 3.9e-22
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V +LIIDE+HLL +RGPV+E +V+RT
Sbjct: 1447 VTILIIDEIHLLGEERGPVLEVIVSRT 1473
Score = 90 (36.7 bits), Expect = 2.7e-37, Sum P(5) = 2.7e-37
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE 151
++++DLGRTAS+YYIK+N IE F E
Sbjct: 976 FSSTDLGRTASHYYIKYNTIETFNE 1000
Score = 65 (27.9 bits), Expect = 1.0e-16, Sum P(4) = 1.0e-16
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 133 GRTASNYYIKHNDIELFTEHMTK--GTE 158
GR AS YY+KH +++F E + GTE
Sbjct: 1816 GRIASYYYLKHQTVKMFKERLKPECGTE 1843
Score = 56 (24.8 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 847 FISSYTKRNVRLVGLSTA--LANAKDLATWLNITKQGMYNFRPSVRPVPLEVHIS 899
F+SS +R RL L LA +D WLN+ ++ M N ++R L++ ++
Sbjct: 1561 FVSS--RRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIGTLRDSNLKLTLA 1613
Score = 46 (21.3 bits), Expect = 2.2e-289, Sum P(4) = 2.2e-289
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 38 IGQEVFKGVKSLNRIQSL 55
+GQ F GVKS N++Q L
Sbjct: 681 LGQ-TFLGVKSANKVQQL 697
Score = 38 (18.4 bits), Expect = 4.8e-15, Sum P(3) = 4.8e-15
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 620 KSEESLIMTIPLSDPLPNQYL 640
+S +S+I + LS LPN YL
Sbjct: 636 ESTQSMIRILGLSATLPN-YL 655
>FB|FBgn0038344 [details] [associations]
symbol:CG5205 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0006200 GO:GO:0005682 GO:GO:0003676
GO:GO:0004386 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0008026 GO:GO:0016779 FlyBase:FBgn0038344 RefSeq:NP_650472.2
UniGene:Dm.1213 ProteinModelPortal:Q9VF56 SMR:Q9VF56
EnsemblMetazoa:FBtr0083147 GeneID:41891 KEGG:dme:Dmel_CG5205
UCSC:CG5205-RA InParanoid:Q9VF56 PhylomeDB:Q9VF56 GenomeRNAi:41891
NextBio:826131 ArrayExpress:Q9VF56 Bgee:Q9VF56 Uniprot:Q9VF56
Length = 2183
Score = 2280 (807.7 bits), Expect = 2.0e-292, Sum P(3) = 2.0e-292
Identities = 440/732 (60%), Positives = 549/732 (75%)
Query: 251 NFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQ 310
NFV LADNLNAE+ LGTI N+DEA+ WLSY+YL VRMRINP YGI Y E+ DP L
Sbjct: 899 NFVNCLADNLNAEIGLGTITNVDEAIEWLSYTYLFVRMRINPHVYGIEYSELEKDPTLEA 958
Query: 311 HRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDD 370
R LI +AA LDKA M+RFN RT D+ ITDLGRTAS +YIK++ +E F E M +
Sbjct: 959 RRRALIMSAAMSLDKARMMRFNQRTMDMNITDLGRTASYFYIKYDTVETFNELMKPFMTQ 1018
Query: 371 VGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRG 430
IL+MISQA EF+QLKVRD+E+ ELD L C+I GGSENVHGKVNIL+QT LS G
Sbjct: 1019 AEILAMISQAQEFQQLKVRDDEMEELDELKNAYCKIKPYGGSENVHGKVNILIQTYLSNG 1078
Query: 431 RVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLR 490
V SFSL SD+ Y+ N+ RI RALF I L +NNA+++ L+ MFE +QW + L+
Sbjct: 1079 YVKSFSLSSDMSYITTNIGRISRALFSIVLRQNNAVLSGNMLQLCKMFERRQWDFDCHLK 1138
Query: 491 QIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWE 550
Q P + + ++K+E+RGL+V LR+M +E+ LR D V + A E
Sbjct: 1139 QF----------PTINAETIDKLERRGLSVYRLRDMEHRELKEWLRSNTYADLVIRSAHE 1188
Query: 551 IPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYF 610
+PLLE+E+ L PITRTVL+I + I +F+WND+ + FW+W+EDP+S++IYHSE F
Sbjct: 1189 LPLLEVEASLQPITRTVLRIKVDIWPSFTWNDRVHGKTCQSFWLWIEDPESNYIYHSELF 1248
Query: 611 LLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPP 670
+++K V++ + L+MTIPL +PLP QY IR SD +LGS +SF+HL++PE HPP
Sbjct: 1249 QVTRKLVMSGQSQQLVMTIPLKEPLPPQYYIRVSSDNWLGSTTCIPLSFQHLVLPEHHPP 1308
Query: 671 HTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIA 730
T LL L+PLPVS L+ YESLYKF+HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTI
Sbjct: 1309 LTELLPLRPLPVSCLKNVVYESLYKFTHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIV 1368
Query: 731 AEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFE-ARLKKKVVELTGDVTPDIQA 789
AEI FR Q P+ KVVYIAPLKALVKER+ADW+ +F+ + L KVVELTGDVTPDIQA
Sbjct: 1369 AEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQA 1428
Query: 790 ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFIS 849
I + +IVTTPEKWDG+SRSWQ R YVQ V+LI+IDEIHLLGEDRGPV+EVIVSR NFIS
Sbjct: 1429 IRESQLIVTTPEKWDGISRSWQTREYVQHVSLIVIDEIHLLGEDRGPVIEVIVSRTNFIS 1488
Query: 850 SYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPR 909
S+T R +R+VGLSTALANA+DLA WL I K G+YNF+PSVRPVPL+VHI+GFPGK YCPR
Sbjct: 1489 SHTGRAIRIVGLSTALANAQDLANWLGINKMGLYNFKPSVRPVPLQVHINGFPGKHYCPR 1548
Query: 910 MAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMD 969
MA MN+P + AI+ +SP +P ++FVSSRRQTRLTA+DLIT +A E+NPK ++H + E++
Sbjct: 1549 MATMNRPTFQAIRTYSPCEPTIVFVSSRRQTRLTALDLITFVAGESNPKQFLHIPEDEIE 1608
Query: 970 NIVDNIKDSNLK 981
I+ NI++ NLK
Sbjct: 1609 LILQNIREQNLK 1620
Score = 375 (137.1 bits), Expect = 3.3e-28, Sum P(2) = 3.3e-28
Identities = 95/269 (35%), Positives = 152/269 (56%)
Query: 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC---------PEAKVVYI 750
N IQ+ +F YH++ N+L+ APTG+GKT A ++ + C E K+VYI
Sbjct: 488 NRIQSVVFPVAYHSNENMLVCAPTGAGKTNVAMLSIVHTIR-CHLEQGVINRDEFKIVYI 546
Query: 751 APLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSW 810
AP+KAL E V ++ + ++ L+ V ELTGD+ +++ ++VTTPEKWD V+R
Sbjct: 547 APMKALAAEMVDNFSKRLKS-LQIAVRELTGDIQLTKAEMAATQILVTTPEKWDVVTRKG 605
Query: 811 QNR-NYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAK 869
+ V L+IIDE+HLL +RGPV+E +V+R + ++ +R+VGLS L N
Sbjct: 606 SGDVALISLVELLIIDEVHLLHGERGPVVEALVARTLRLVESSQSMIRIVGLSATLPNYI 665
Query: 870 DLATWLNITK-QGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPE- 927
D+A +L + +G++ F RPVPL+ + G + ++A M++ Y + E
Sbjct: 666 DVAHFLRVNPMKGLFYFDSRFRPVPLDTNFVGIKSVKQLQQIADMDQCCYQKCVEMVQEG 725
Query: 928 KPVMIFVSSRRQTRLTAIDLITILACETN 956
+M+FV +R T TA ++I LA + N
Sbjct: 726 HQIMVFVHARNATVRTA-NVIRELAQQNN 753
Score = 361 (132.1 bits), Expect = 2.0e-292, Sum P(3) = 2.0e-292
Identities = 69/99 (69%), Positives = 82/99 (82%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
+GT++Y+AKHG +V +GILDVLQIFGRAGRPQ++ SG TIIT ++KLNHYLSLLTNQ P
Sbjct: 836 RGTDIYDAKHGSFVDLGILDVLQIFGRAGRPQFDKSGVGTIITSYDKLNHYLSLLTNQFP 895
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFV 253
IESNFV LADNLNAE+ LGTI N+DEA+ WL FV
Sbjct: 896 IESNFVNCLADNLNAEIGLGTITNVDEAIEWLSYTYLFV 934
Score = 209 (78.6 bits), Expect = 2.0e-292, Sum P(3) = 2.0e-292
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 35 LRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHIS 94
L +G+ F K LNRIQS+V+ AYH+NEN+L+CAPTGAGKTNVAML+I H I+ H+
Sbjct: 473 LDDVGRLAFANCKELNRIQSVVFPVAYHSNENMLVCAPTGAGKTNVAMLSIVHTIRCHLE 532
Query: 95 QG 96
QG
Sbjct: 533 QG 534
Score = 185 (70.2 bits), Expect = 1.2e-44, Sum P(4) = 1.2e-44
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGTE ++ K YV + I DVLQ+ GRAGRPQ++ G A ++ EK N Y L + P
Sbjct: 1674 KGTEYFDGKVKKYVDMPITDVLQMMGRAGRPQFDNEGVAVVLVHDEKKNFYKKFLYDPFP 1733
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
+ES+ + L +++NAE+ GT+ + A+ +L
Sbjct: 1734 VESSLLGVLPEHINAEIVAGTVQSKQAALDYL 1765
Score = 173 (66.0 bits), Expect = 3.3e-57, Sum P(3) = 3.3e-57
Identities = 53/212 (25%), Positives = 105/212 (49%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQH-RTT 314
L +++NAE+ GT+ + A+ +L+++Y R+ NP Y + ++ +P+ + + +
Sbjct: 1742 LPEHINAEIVAGTVQSKQAALDYLTWTYFFRRLLRNPSYYQLQ--DI--EPENVNNFMSN 1797
Query: 315 LIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGIL 374
L+E L A + R L T LGR +S YY+ + ++ F E + ++ +L
Sbjct: 1798 LVERVVYELSAAACLV--ERDGCLIPTFLGRISSYYYLSYRTMKHFLEDLQPGMNTKKVL 1855
Query: 375 SMISQAHEFEQLKVRDEELHELDNLTQECCEI----PIRGGSENVHGKVNILLQTLLSRG 430
I+ ++EF+QL VR H D +E E+ P ++ + K +LLQ +R
Sbjct: 1856 LAIADSYEFDQLPVR----HNEDKHNEEMAEVSRFRPPSSSWDSSYTKTFLLLQAHFARQ 1911
Query: 431 RVNSFSLVSDLEYVNQNVIRIIRALFEITLHR 462
+ + ++D + N R+++A+ + T R
Sbjct: 1912 SLPNSDYLTDTKSALDNATRVMQAMVDYTAER 1943
Score = 167 (63.8 bits), Expect = 3.1e-266, Sum P(3) = 3.1e-266
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 66 NLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRP 125
++L+C T A N+ AH + I +GT++Y+AKHG +V +GILDVLQIFGRAGRP
Sbjct: 814 SVLVCTATLAWGVNLP----AHAV---IIRGTDIYDAKHGSFVDLGILDVLQIFGRAGRP 866
Query: 126 QYNTSDLGRTASNYYIKHNDIELFT 150
Q++ S +G ++Y ++ + L T
Sbjct: 867 QFDKSGVGTIITSYDKLNHYLSLLT 891
Score = 155 (59.6 bits), Expect = 9.9e-287, Sum P(3) = 9.9e-287
Identities = 31/38 (81%), Positives = 35/38 (92%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
DVAL LV+LLIIDEVHLLHG+RGPV+EALVARTLR +
Sbjct: 608 DVALISLVELLIIDEVHLLHGERGPVVEALVARTLRLV 645
Score = 102 (41.0 bits), Expect = 4.3e-27, Sum P(3) = 4.3e-27
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 11 LIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLIC 70
L++ E H + P + L L+ + E N IQ+ ++ YHT+ N+L+
Sbjct: 1300 LVLPEHHPPLTELLP-LRPLPVSCLKNVVYESLYKFTHFNPIQTQIFHCLYHTDNNVLLG 1358
Query: 71 APTGAGKTNVAMLTIAHQIKQH 92
APTG+GKT VA + I + Q+
Sbjct: 1359 APTGSGKTIVAEIAIFRALNQN 1380
Score = 97 (39.2 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V L++IDE+HLL DRGPVIE +V+RT
Sbjct: 1458 VSLIVIDEIHLLGEDRGPVIEVIVSRT 1484
Score = 93 (37.8 bits), Expect = 5.0e-23, Sum P(3) = 5.0e-23
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 80 VAMLTIAHQIK--QH--ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYN 128
VA T+A + H + +GTE ++ K YV + I DVLQ+ GRAGRPQ++
Sbjct: 1655 VATATLAWGVNLPAHLVVIKGTEYFDGKVKKYVDMPITDVLQMMGRAGRPQFD 1707
Score = 79 (32.9 bits), Expect = 3.0e-41, Sum P(4) = 3.0e-41
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 128 NTSDLGRTASNYYIKHNDIELFTEHM 153
N +DLGRTAS +YIK++ +E F E M
Sbjct: 987 NITDLGRTASYFYIKYDTVETFNELM 1012
Score = 48 (22.0 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 132 LGRTASNYYIKHNDIELFTEHMTKG 156
LGR +S YY+ + ++ F E + G
Sbjct: 1824 LGRISSYYYLSYRTMKHFLEDLQPG 1848
Score = 42 (19.8 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 611 LLSKKQVITKSEESLIMTIPLSDPLPN 637
L+++ + +S +S+I + LS LPN
Sbjct: 637 LVARTLRLVESSQSMIRIVGLSATLPN 663
Score = 38 (18.4 bits), Expect = 3.3e-28, Sum P(2) = 3.3e-28
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 392 ELHELDNLTQEC 403
+L +L NL QEC
Sbjct: 68 QLQKLRNLVQEC 79
>RGD|1307995 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex subunit
3" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 RGD:1307995 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 IPI:IPI01016410 UniGene:Rn.24209
Ensembl:ENSRNOT00000057016 UCSC:RGD:1307995
GeneTree:ENSGT00640000091272 ArrayExpress:F1LPQ2 Uniprot:F1LPQ2
Length = 2197
Score = 2211 (783.4 bits), Expect = 6.1e-287, Sum P(3) = 6.1e-287
Identities = 420/732 (57%), Positives = 544/732 (74%)
Query: 252 FVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQH 311
F+ +LADNLNAE+ALGT+ N++EAV+W+SY+YL+VRMR NP YGIS+ DP L +H
Sbjct: 891 FLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYGISHKAYQMDPTLRKH 950
Query: 312 RTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDV 371
R L+ Q LDKA MIRF RT + TDLGRTAS+YYIK+N IE F E +
Sbjct: 951 REQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1010
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
I +++S+A EF+Q+KVR+EE+ ELD L CE+ GG EN +GK+NILLQT +SRG
Sbjct: 1011 DIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGE 1070
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
++SFSL+SD YV QN RI+RALFEI L + M R L + + + + W +PLRQ
Sbjct: 1071 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQ 1130
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI 551
+L P IL ++E++ LTV+ L++M EI ++L ++G KVKQC +I
Sbjct: 1131 FS----------VLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQI 1180
Query: 552 PLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFL 611
P + +E+ + PITRTVL++ L I +FSWND+ T EP+WIWVEDP +D IYHSEYFL
Sbjct: 1181 PSVTMEASIQPITRTVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFL 1240
Query: 612 LSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPH 671
KKQVI K + L+ TIP+ +PLP+QY IRA+SDR+LG+ ++F+HLI+PE HPPH
Sbjct: 1241 ALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPH 1300
Query: 672 TNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAA 731
T LL+LQPLPV+AL YE+LY FSHFNP+QTQIFH LYHTD NVLLGAPTGSGKT+AA
Sbjct: 1301 TELLDLQPLPVTALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAA 1360
Query: 732 EITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791
E+ FRVF + P +K VYIAPLKALV+ER+ DWK++ E +L KKV+ELTGDVTPD+++I+
Sbjct: 1361 ELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIA 1420
Query: 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSY 851
A +IVTTPEKWDGVSRSWQNR+YVQ V ++IIDEIHLLGE+RGPVLEVIVSR NFISS+
Sbjct: 1421 KADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRTNFISSH 1480
Query: 852 TKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMA 911
T++ VR+VGLSTALANA+DLA WLNI + G++NFRPSVRPVPLEVHI GFPG+ YCPRMA
Sbjct: 1481 TEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMA 1540
Query: 912 KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNI 971
MNKP + H P++P ++ + R + +T ++LI LA E +PK W++ + EM+NI
Sbjct: 1541 SMNKPAFQESHTHCPDRPCLL-LPERMLSSMTKLELIAFLATEEDPKQWLNMDEQEMENI 1599
Query: 972 VDNIKDSNLKLT 983
+ ++DSNLKLT
Sbjct: 1600 IATVRDSNLKLT 1611
Score = 387 (141.3 bits), Expect = 1.8e-31, P = 1.8e-31
Identities = 106/306 (34%), Positives = 160/306 (52%)
Query: 654 QHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHT 713
+++ ++ + +P P E +P+ + L + + N IQ+ +F Y+T
Sbjct: 434 ENTKLYEEVRIPYSEPMPVGFEE-KPVYIQDLDEVGQLAFKGMKRLNRIQSIVFDTAYNT 492
Query: 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQC--------PEAKVVYIAPLKALVKERVADWK 765
+ N+L+ APTG+GKT A +T +Q E K+VY+AP+KAL E +
Sbjct: 493 NENMLICAPTGAGKTNIAMLTVLHEIRQHFHQGVLKKNEFKIVYVAPMKALAAEMTNYFS 552
Query: 766 VKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR-SWQNRNYVQSVALIII 824
+ E L V ELTGD+ I ++VTTPEKWD V+R S + Q V L+I+
Sbjct: 553 KRLEP-LGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLIL 611
Query: 825 DEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ-GMY 883
DE+HLL EDRGPVLE IV+R T+ +R++GLS L N D+AT+L++ G++
Sbjct: 612 DEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLF 671
Query: 884 NFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAI-KQHSPEKPVMIFVSSRRQTRL 942
F RPVPL G ++ M++ Y ++ KQ VM+FV +R T
Sbjct: 672 YFDGRFRPVPLGQTFLGIKSANKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVR 731
Query: 943 TAIDLI 948
TA+ LI
Sbjct: 732 TAMSLI 737
Score = 334 (122.6 bits), Expect = 6.1e-287, Sum P(3) = 6.1e-287
Identities = 63/104 (60%), Positives = 82/104 (78%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y AK G +V +GILDV+QIFGRAGRPQ++ G IIT H+KL+HYLSLLT Q P
Sbjct: 827 KGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNP 886
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
IES F+ +LADNLNAE+ALGT+ N++EAV+W+ +Y+ AN
Sbjct: 887 IESQFLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRAN 930
Score = 253 (94.1 bits), Expect = 6.1e-287, Sum P(3) = 6.1e-287
Identities = 52/100 (52%), Positives = 70/100 (70%)
Query: 12 IIDEVHLLHGDRGPV-IEA--LVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLL 68
+ +EV + + + PV E + + L ++GQ FKG+K LNRIQS+V+DTAY+TNEN+L
Sbjct: 438 LYEEVRIPYSEPMPVGFEEKPVYIQDLDEVGQLAFKGMKRLNRIQSIVFDTAYNTNENML 497
Query: 69 ICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
ICAPTGAGKTN+AMLT+ H+I+QH QG N YV
Sbjct: 498 ICAPTGAGKTNIAMLTVLHEIRQHFHQGVLKKNEFKIVYV 537
Score = 234 (87.4 bits), Expect = 3.1e-66, Sum P(4) = 3.1e-66
Identities = 63/238 (26%), Positives = 117/238 (49%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L+D+LNAE+A GTI + +A+ +++++Y R+ +NP Y + +V+ D + + + L
Sbjct: 1731 LSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLG--DVSQDA-INKFLSHL 1787
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
I + L+ +H I R + GR AS YY+KH +++F + + +LS
Sbjct: 1788 IGQSLVELELSHCIEVGEDNRSIEPLTCGRIASYYYLKHKTVKMFKDRLKPECSTEELLS 1847
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGS-ENVHGKVNILLQTLLSRGRVNS 434
++S A E+ L VR E H + L + C I + S ++ H K ++LLQ LSR +
Sbjct: 1848 ILSDAEEYTDLPVRHNEDHTNNELAK-CLPIELNPHSFDSPHTKAHLLLQAHLSRAMLPC 1906
Query: 435 FSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQI 492
+D + V +R+ +A+ ++ + + M +W ++ L I
Sbjct: 1907 PDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTTLNITHLIQMVIQGRWLKDSSLLTI 1964
Score = 194 (73.4 bits), Expect = 8.0e-36, Sum P(6) = 8.0e-36
Identities = 44/112 (39%), Positives = 62/112 (55%)
Query: 149 FTEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
F H+ KGTE Y+ K YV I DVLQ+ GRAGRPQ++ G A I+ K + Y
Sbjct: 1655 FPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYK 1714
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEA---VRWLIIYINFVAN 255
L P+ES+ + L+D+LNAE+A GTI + +A + W + + N
Sbjct: 1715 KFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMN 1766
Score = 156 (60.0 bits), Expect = 8.7e-280, Sum P(4) = 8.7e-280
Identities = 29/38 (76%), Positives = 37/38 (97%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
DVAL+++VKLLI+DEVHLLH DRGPV+E++VARTLRQ+
Sbjct: 599 DVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQV 636
Score = 139 (54.0 bits), Expect = 3.2e-259, Sum P(4) = 3.2e-259
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 49 LNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYV 108
L + ++LV + + + +L+C T A N+ AH + I +GT++Y AK G +V
Sbjct: 788 LRQDRNLVENLFSNGHIKVLVCTATLAWGVNLP----AHAV---IIKGTQIYAAKRGSFV 840
Query: 109 HIGILDVLQIFGRAGRPQYN 128
+GILDV+QIFGRAGRPQ++
Sbjct: 841 DLGILDVMQIFGRAGRPQFD 860
Score = 98 (39.6 bits), Expect = 6.1e-31, Sum P(5) = 6.1e-31
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGR 134
I +GTE Y+ K YV I DVLQ+ GRAGRPQ++ D G+
Sbjct: 1661 IIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFD--DQGK 1700
Score = 98 (39.6 bits), Expect = 2.5e-25, Sum P(4) = 2.5e-25
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 12 IIDEVHLLHGDRGPV-IEALVARTL--RQIGQEVFKGVKSL---NRIQSLVYDTAYHTNE 65
II+ HL+ +R P E L + L +G + ++ + + N +Q+ ++ T YHT+
Sbjct: 1285 IINFQHLILPERHPPHTELLDLQPLPVTALGCKAYEALYNFSHFNPVQTQIFHTLYHTDC 1344
Query: 66 NLLICAPTGAGKTNVAMLTI 85
N+L+ APTG+GKT A L I
Sbjct: 1345 NVLLGAPTGSGKTVAAELAI 1364
Score = 94 (38.1 bits), Expect = 3.8e-40, Sum P(6) = 3.8e-40
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE----HMTKG 156
++++DLGRTAS+YYIK+N IE F E H T+G
Sbjct: 977 FSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1010
Score = 92 (37.4 bits), Expect = 1.0e-24, Sum P(4) = 1.0e-24
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVART 34
V +LIIDE+HLL +RGPV+E +V+RT
Sbjct: 1448 VNILIIDEIHLLGEERGPVLEVIVSRT 1474
Score = 60 (26.2 bits), Expect = 3.1e-66, Sum P(4) = 3.1e-66
Identities = 20/79 (25%), Positives = 35/79 (44%)
Query: 836 PVLEVIVS-RVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPL 894
PV+ V +S + ++ S N + +ST A+ +D TW+ + Y + S++ V
Sbjct: 2034 PVINVGISVKGSWDDSVEGHNE--LSISTLTADKRDENTWIKLHADQQYVLQVSLQRVHF 2091
Query: 895 EVHISGFPGKQYCPRMAKM 913
E H PR K+
Sbjct: 2092 EFHKVKHESHAVTPRFPKL 2110
Score = 59 (25.8 bits), Expect = 4.6e-17, Sum P(5) = 4.6e-17
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 133 GRTASNYYIKHNDIELFTEHM 153
GR AS YY+KH +++F + +
Sbjct: 1816 GRIASYYYLKHKTVKMFKDRL 1836
Score = 56 (24.8 bits), Expect = 1.2e-46, Sum P(3) = 1.2e-46
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 826 EIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNF 885
E H DR P L ++ R+ +SS TK + L+ LA +D WLN+ +Q M N
Sbjct: 1549 ESHTHCPDR-PCL-LLPERM--LSSMTK--LELIAF---LATEEDPKQWLNMDEQEMENI 1599
Query: 886 RPSVRPVPLEVHIS 899
+VR L++ ++
Sbjct: 1600 IATVRDSNLKLTLA 1613
Score = 49 (22.3 bits), Expect = 6.7e-46, Sum P(3) = 6.7e-46
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 406 IPIRGG-SENVHGKVNILLQTLLSRGR-VNSF-SLVSDLEYVNQNVIRIIRALFEITLHR 462
I ++G ++V G + + TL + R N++ L +D +YV Q ++ + F H
Sbjct: 2040 ISVKGSWDDSVEGHNELSISTLTADKRDENTWIKLHADQQYVLQVSLQRVHFEFHKVKHE 2099
Query: 463 NNAIMAARFLK 473
++A+ RF K
Sbjct: 2100 SHAV-TPRFPK 2109
Score = 43 (20.2 bits), Expect = 8.7e-280, Sum P(4) = 8.7e-280
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 38 IGQEVFKGVKSLNRIQSL 55
+GQ F G+KS N++Q L
Sbjct: 682 LGQ-TFLGIKSANKMQQL 698
Score = 38 (18.4 bits), Expect = 4.3e-16, Sum P(3) = 4.3e-16
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 620 KSEESLIMTIPLSDPLPNQYL 640
+S +S+I + LS LPN YL
Sbjct: 637 ESTQSMIRILGLSATLPN-YL 656
Score = 38 (18.4 bits), Expect = 5.5e-15, Sum P(5) = 5.5e-15
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 127 YNTSDLGRTASNYYIKH 143
YN D+ + A N ++ H
Sbjct: 1770 YNLGDVSQDAINKFLSH 1786
Score = 37 (18.1 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 62 HTNENLLICAPTGAGKTNV-AMLTIAHQIKQ-HISQ 95
HTN L C P + + T AH + Q H+S+
Sbjct: 1866 HTNNELAKCLPIELNPHSFDSPHTKAHLLLQAHLSR 1901
>DICTYBASE|DDB_G0290389 [details] [associations]
symbol:ascc3 "activating signal cointegrator 1
complex subunit" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 dictyBase:DDB_G0290389 GO:GO:0005524
GO:GO:0006355 GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AAFI02000163 RefSeq:XP_635715.1
ProteinModelPortal:Q54G57 EnsemblProtists:DDB0233132 GeneID:8627633
KEGG:ddi:DDB_G0290389 InParanoid:Q54G57 KO:K15271
ProtClustDB:CLSZ2429672 Uniprot:Q54G57
Length = 2195
Score = 1839 (652.4 bits), Expect = 5.5e-239, Sum P(3) = 5.5e-239
Identities = 359/734 (48%), Positives = 507/734 (69%)
Query: 252 FVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQH 311
F+ NL D+LNAE+ LGT+ N++EAV WLSY+YL +RM NP YGI + + DP L +
Sbjct: 892 FITNLEDHLNAEIVLGTVSNVNEAVNWLSYTYLFIRMLQNPLVYGIPSSQRSKDPQLEEF 951
Query: 312 RTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDV 371
+ +I AA+ L++ M RF+ ++ +L +T+LGR AS+YYIKH IE F E + L
Sbjct: 952 KREIIIRAAKKLEQCKMTRFDEQSENLGMTELGRIASHYYIKHPSIETFNEMLNDQLGQD 1011
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
+L+++S + EFE + +R+EE ELD L + C + + H KV LLQ SR
Sbjct: 1012 QVLNILSNSSEFENITLREEESTELDKLAENQCYYELT--VLDSHSKVKCLLQAFFSRAN 1069
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
++ FSLVSD Y QN RI+R LFEI+L + ++ L M + + W E+PLRQ
Sbjct: 1070 IDGFSLVSDSNYTVQNSSRILRGLFEISLKKGWCTVSKTILDLCKMVDHQLWHFESPLRQ 1129
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI 551
K +L D + KIE+R T E + +M E+S++L + + ++ A +
Sbjct: 1130 AK----------VLSLDTIRKIEERDWTPERICDMEIGELSFVLGNQLIAKTTRKIAQQF 1179
Query: 552 PLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFL 611
P L+ E ++ PIT +++I++T+ FSWNDK ++PFWIWV+D +S +I+HSEYF+
Sbjct: 1180 PQLDFEIQVQPITANIIRINMTLIPMFSWNDKMHGD-SQPFWIWVQDNESQYIFHSEYFM 1238
Query: 612 LSKKQVITKSEE-SLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPEL-HP 669
L+KK + ++E +L IPL +P+P+Q+ + +SDR+LGS +SF+HL++P+
Sbjct: 1239 LTKK-IYNQTEPITLTCIIPLPNPMPSQFFLHYISDRWLGSEGIREISFRHLVLPQQDRV 1297
Query: 670 PHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTI 729
+T LL+LQPLP AL+ +ESL+KFSHFNPIQTQ+FH LY+T+NNVLLG+PTGSGKTI
Sbjct: 1298 VNTELLDLQPLPKEALKNKDFESLFKFSHFNPIQTQVFHTLYYTNNNVLLGSPTGSGKTI 1357
Query: 730 AAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA 789
AE+ F+VF+ P KVVYIAPLKALV+ER+ DWKVKF+ +L KK+VELTGD TP++ A
Sbjct: 1358 CAELAMFKVFRDEPHMKVVYIAPLKALVRERMNDWKVKFQEKLGKKLVELTGDYTPNMIA 1417
Query: 790 ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFIS 849
+ +A ++ TTPEKWDG+SR+W+NR+YV SV+L+IIDEIHL+GE RGP+LEVIVSR+ IS
Sbjct: 1418 LQNADIVTTTPEKWDGISRNWKNRSYVTSVSLLIIDEIHLIGELRGPILEVIVSRMKLIS 1477
Query: 850 SYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPR 909
T N+R+VGLSTA+ANA DL+ W+ I + G++NFRPS RPVP+EVHI GF GK YCPR
Sbjct: 1478 KQTGVNIRVVGLSTAMANAIDLSEWMGIDRVGLFNFRPSCRPVPIEVHIQGFQGKNYCPR 1537
Query: 910 MAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMD 969
M MNKP + AI +SP+KPV+IFVSSRRQTRLTA+DLI+ L + +P W+ +++
Sbjct: 1538 MQTMNKPSFAAIATYSPKKPVLIFVSSRRQTRLTALDLISYLVVDNDPLQWIQKG-FDIE 1596
Query: 970 NIVDNIKDSNLKLT 983
+ +KD +L+ T
Sbjct: 1597 PTLARVKDQHLRHT 1610
Score = 391 (142.7 bits), Expect = 6.6e-32, P = 6.6e-32
Identities = 113/322 (35%), Positives = 171/322 (53%)
Query: 650 GSVVQHSMSFKHLIVP-ELHPPHTN---LLELQPLPVSALQQPQYESLYKFSHFNPIQTQ 705
G+V + ++VP L P + L+E+ ++ + + + S+ K N IQ++
Sbjct: 434 GTVRTEKTTHTEVMVPYSLAKPFADNEKLIEIGE-SIAEISRAAFGSIKKL---NRIQSR 489
Query: 706 IFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--PEA-------KVVYIAPLKAL 756
+F Y ++ N+L+ APTG+GKT A +T + P K++YIAPLKAL
Sbjct: 490 VFESAYKSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKAL 549
Query: 757 VKERVADWK--VKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRN 814
E V + +K+ + K ELTGD+ + + +IVTTPEKWD ++R +
Sbjct: 550 ASEMVEKFSNSLKYLGIVSK---ELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVA 606
Query: 815 YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATW 874
+ V LIIIDEIHLL E+RGPVLE IV+R T+ +R+VGLS L N KD+A +
Sbjct: 607 LTKLVRLIIIDEIHLLHEERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARF 666
Query: 875 LNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAK-MNKPIYTAIKQHSPE-KPVMI 932
+ G + F S RPVPL + G Q M MN+ Y +++ E VMI
Sbjct: 667 IRAPASGTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMNQLCYERLEKSLKEGHQVMI 726
Query: 933 FVSSRRQTRLTAIDLITILACE 954
FV SR+ T +A ++++ +A E
Sbjct: 727 FVHSRKDTVKSA-EILSDMAKE 747
Score = 317 (116.6 bits), Expect = 5.5e-239, Sum P(3) = 5.5e-239
Identities = 57/106 (53%), Positives = 82/106 (77%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++YNAK+G ++ +GI DV+QIFGRAGRPQ++TSG ++T +KL+HYLSL+++ +P
Sbjct: 828 KGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMP 887
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNL 260
IES F+ NL D+LNAE+ LGT+ N++EAV WL F+ L + L
Sbjct: 888 IESKFITNLEDHLNAEIVLGTVSNVNEAVNWLSYTYLFIRMLQNPL 933
Score = 232 (86.7 bits), Expect = 2.2e-56, Sum P(3) = 2.2e-56
Identities = 71/294 (24%), Positives = 149/294 (50%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L D+LNAE+ GTI + A+ +L ++ R+ ++P YG+ + V + Q+ + L
Sbjct: 1730 LHDHLNAEIVSGTIQSKQGAINYLVNTFFFRRLVVSPSYYGLEDNSVEA---VNQYLSDL 1786
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
+++ L+++ I N + ++ +G+ AS YY+ + ++ F++++ + D +L
Sbjct: 1787 LDSTLADLEQSSCIEINEYDEIIPMS-MGKIASFYYLNYKTVQNFSDNIKRDSDIKTLLR 1845
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCE-IPIR-GGSENVHGKVNILLQTLLSRGRVN 433
++S A E+ + VR E E+ L QE E +PI+ G E+ H KV++LLQ R +
Sbjct: 1846 VLSDAAEYSEFPVRHNE--EI--LNQELNENLPIKIGNYEDSHTKVHLLLQAHFQRCPLP 1901
Query: 434 SFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIK 493
+D + IRI++A+ +++ A + ++ M +W +++ L +
Sbjct: 1902 ITDFTTDTKSALDQGIRILQAMIDVSFEYGYFATAIQVIRLLQMLVQGRWDYDSSLMTLP 1961
Query: 494 LVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGD-KVKQ 546
+ N+ + + IL+ EQ + D+ ++P +I L + + D ++K+
Sbjct: 1962 HI-NKDFADFLSSNLILSNGEQIS-NLSDMLKIPRDKIHLSLTNIGLSDSQIKE 2013
Score = 188 (71.2 bits), Expect = 5.5e-239, Sum P(3) = 5.5e-239
Identities = 36/73 (49%), Positives = 54/73 (73%)
Query: 22 DRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVA 81
D +IE + ++ +I + F +K LNRIQS V+++AY +NEN+LI APTGAGKTN+A
Sbjct: 458 DNEKLIE--IGESIAEISRAAFGSIKKLNRIQSRVFESAYKSNENILISAPTGAGKTNIA 515
Query: 82 MLTIAHQIKQHIS 94
+LTI H+I+ +I+
Sbjct: 516 LLTILHEIESNIN 528
Score = 177 (67.4 bits), Expect = 3.1e-50, Sum P(5) = 3.1e-50
Identities = 37/93 (39%), Positives = 54/93 (58%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGTE ++ K YV + DVLQ+ GRAGRPQ++ G A ++ K Y L + P
Sbjct: 1662 KGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFYKKFLYDPFP 1721
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLI 247
+ES+ L D+LNAE+ GTI + A+ +L+
Sbjct: 1722 VESHLKDFLHDHLNAEIVSGTIQSKQGAINYLV 1754
Score = 152 (58.6 bits), Expect = 3.5e-235, Sum P(3) = 3.5e-235
Identities = 28/38 (73%), Positives = 36/38 (94%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
DVALT+LV+L+IIDE+HLLH +RGPV+E +VARTLRQ+
Sbjct: 604 DVALTKLVRLIIIDEIHLLHEERGPVLECIVARTLRQV 641
Score = 145 (56.1 bits), Expect = 5.0e-217, Sum P(3) = 5.0e-217
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+L+C T A N+ AH + I +GT++YNAK+G ++ +GI DV+QIFGRAGRPQ
Sbjct: 807 VLVCTATLAWGVNLP----AHTV---IIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQ 859
Query: 127 YNTSDLG 133
++TS G
Sbjct: 860 FDTSGEG 866
Score = 94 (38.1 bits), Expect = 2.8e-42, Sum P(4) = 2.8e-42
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
+ +FK N IQ+ V+ T Y+TN N+L+ +PTG+GKT A L +
Sbjct: 1319 ESLFK-FSHFNPIQTQVFHTLYYTNNNVLLGSPTGSGKTICAELAM 1363
Score = 80 (33.2 bits), Expect = 3.1e-30, Sum P(3) = 3.1e-30
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVAR 33
V LLIIDE+HL+ RGP++E +V+R
Sbjct: 1447 VSLLIIDEIHLIGELRGPILEVIVSR 1472
Score = 74 (31.1 bits), Expect = 3.1e-50, Sum P(5) = 3.1e-50
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 130 SDLGRTASNYYIKHNDIELFTE 151
++LGR AS+YYIKH IE F E
Sbjct: 981 TELGRIASHYYIKHPSIETFNE 1002
Score = 48 (22.0 bits), Expect = 3.6e-15, Sum P(3) = 3.6e-15
Identities = 6/28 (21%), Positives = 20/28 (71%)
Query: 132 LGRTASNYYIKHNDIELFTEHMTKGTEM 159
+G+ AS YY+ + ++ F++++ + +++
Sbjct: 1813 MGKIASFYYLNYKTVQNFSDNIKRDSDI 1840
>ASPGD|ASPL0000044033 [details] [associations]
symbol:AN2482 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:BN001307 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 OMA:FPGKHYC InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GO:GO:0008026 OrthoDB:EOG4H75KM
EMBL:AACD01000041 RefSeq:XP_660086.1 ProteinModelPortal:Q5BAE8
EnsemblFungi:CADANIAT00009203 GeneID:2875191 KEGG:ani:AN2482.2
Uniprot:Q5BAE8
Length = 2015
Score = 1817 (644.7 bits), Expect = 1.2e-234, Sum P(3) = 1.2e-234
Identities = 357/733 (48%), Positives = 494/733 (67%)
Query: 252 FVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQH 311
F + L DNLNAE+ALGT+ +I E V+WL YSYL VRM+ PR YGI Y E+ DP L+
Sbjct: 696 FSSRLVDNLNAEIALGTVTSISEGVQWLGYSYLFVRMKREPRNYGIDYTELIDDPGLVLR 755
Query: 312 RTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDV 371
R LI AA +L K+ MI +N +T +L D+GR AS YY+ IE+F E M +
Sbjct: 756 RRQLIIQAALVLQKSQMIIYNEKTEELRAKDVGRIASQYYVLQTSIEIFNELMRPRSGEA 815
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
+L MIS + EF+ ++ R+ E EL L +E + + GG+++ K NILLQ+ +SR +
Sbjct: 816 DVLRMISMSGEFDNIQSRENESKELTRLREEAVQTEVEGGNDSAQAKTNILLQSYISRAK 875
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
+ F+LVSD YV QN RI RALF I L+R L E + WP + P RQ
Sbjct: 876 IEDFALVSDTGYVAQNAARICRALFMIALNRRWGYQCQVLLSMCKSIEKQMWPFDHPFRQ 935
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI 551
L PIL+ ++ K+ +VE +R+M E+ ++ + +G + +
Sbjct: 936 FDL------PQPILR-NLEEKLPTS--SVESMRDMETAELGQLVHNHKMGKTLAKLLDNF 986
Query: 552 PLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFL 611
P L +E+++ P+ R VL++ L + F+WND++ +E +WIWVE+ ++ IYH EYF+
Sbjct: 987 PTLSVEAEIAPLNRDVLRVRLMLYPEFTWNDRHHGA-SESYWIWVENSETSEIYHHEYFI 1045
Query: 612 LSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPH 671
LS+K++ E L TIPLSDPLPNQ +RA+SDR+LG+ +SF+HLI P+ +
Sbjct: 1046 LSRKKLYDDHE--LNFTIPLSDPLPNQIYVRAISDRWLGAETVTPISFQHLIRPDTESVY 1103
Query: 672 TNLLELQPLPVSALQQPQYESLY--KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTI 729
T+LLELQPLP+SAL+ P E LY +F +FNP+QTQ+FH LYHT NVLLG+PTGSGKT+
Sbjct: 1104 TDLLELQPLPISALKNPILEELYGQRFQYFNPMQTQLFHVLYHTAANVLLGSPTGSGKTV 1163
Query: 730 AAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA 789
AAE+ + F++ P +KVVYIAP+KALV+ERV DW + A + K+VELTGD TPD +
Sbjct: 1164 AAELAMWWAFRERPGSKVVYIAPMKALVRERVMDWGRRLTAPMGLKLVELTGDNTPDTRT 1223
Query: 790 ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFIS 849
I A +I+TTPEKWDG+SRSWQ R+YV+ V+L+IIDEIHLLG DRGP+LE+IVSR+N+I+
Sbjct: 1224 IRDADIIITTPEKWDGISRSWQTRDYVRKVSLVIIDEIHLLGGDRGPILEIIVSRMNYIA 1283
Query: 850 SYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQ-YCP 908
S +K +VRL+G+STA ANA DLA WL + K+G+YNFR SVRPVPLE++I GFP ++ +CP
Sbjct: 1284 SQSKGSVRLMGMSTACANASDLANWLGV-KEGLYNFRHSVRPVPLEIYIDGFPEQRGFCP 1342
Query: 909 RMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEM 968
M MN+P + AIK HSPEKPV++FV+SRRQTRLTA DLI E NP+ +V S+ ++
Sbjct: 1343 LMQSMNRPTFLAIKNHSPEKPVIVFVASRRQTRLTAKDLINFCGMEDNPRRFVRMSEDDL 1402
Query: 969 DNIVDNIKDSNLK 981
++ +KD L+
Sbjct: 1403 QLNLERVKDDALR 1415
Score = 332 (121.9 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 88/204 (43%), Positives = 119/204 (58%)
Query: 746 KVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDG 805
K+VY+AP+KAL E V + K A L KV ELTGD+ + I +IVTTPEKWD
Sbjct: 351 KIVYVAPMKALAAE-VTEKLGKRLAWLGIKVRELTGDMQLTKREIVETQIIVTTPEKWDV 409
Query: 806 VSR-SWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTA 864
V+R S + VQ V L+IIDE+H+L ++RG V+E +V+R T+ +R+VGLS
Sbjct: 410 VTRKSTGDTELVQKVRLLIIDEVHMLHDERGAVIESLVARTQRQVESTQSLIRIVGLSAT 469
Query: 865 LANAKDLATWLNITKQ-GMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQ 923
L N D+A +L + K G++ F S RPVPLE H G GK + ++ N T K
Sbjct: 470 LPNYVDVADFLKVNKMAGLFFFDSSFRPVPLEQHFIGVKGKPGS-KQSRDNIDTVTFEKV 528
Query: 924 HSP-EK--PVMIFVSSRRQTRLTA 944
E+ VM+FV SR+ T LTA
Sbjct: 529 RDMLERGHQVMVFVHSRKDTVLTA 552
Score = 305 (112.4 bits), Expect = 1.2e-234, Sum P(3) = 1.2e-234
Identities = 57/92 (61%), Positives = 72/92 (78%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++YN + G +V +GILDVLQIFGRAGRPQ+ +G I T H+KLNHYLS +T+Q P
Sbjct: 632 KGTQLYNPQEGKFVDLGILDVLQIFGRAGRPQFQDTGIGFICTTHDKLNHYLSAVTSQQP 691
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
IES F + L DNLNAE+ALGT+ +I E V+WL
Sbjct: 692 IESRFSSRLVDNLNAEIALGTVTSISEGVQWL 723
Score = 182 (69.1 bits), Expect = 1.7e-48, Sum P(4) = 1.7e-48
Identities = 62/245 (25%), Positives = 109/245 (44%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDP-DLIQHRTT 314
L ++L AEV+ GTI +A+ +L++++ R+ NP YG+ E++ D + ++ +T
Sbjct: 1537 LDNHLGAEVSAGTIATKQDALDYLTWTFFFRRLHKNPSYYGL---EISADQHNSLEAQTL 1593
Query: 315 -------LIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKV 367
L++ + L ++ I F+ T ++ T G+ S YY+ H I H
Sbjct: 1594 AQDFMIDLVDKSLSELSESSCIIFDSATGEVDPTPFGKIMSYYYLAHKTIRYLLSHAKPA 1653
Query: 368 LDDVGILSMISQAHEFEQLKVR-DEELHELDNLTQECCEIPIRGGSE--NVHGKVNILLQ 424
+LS + A EF++L VR +E+L + + G + H K +LLQ
Sbjct: 1654 PSFHDVLSWMCSATEFDELPVRHNEDLINAELSRNLPLAVDPMGDLPMWDPHVKAFLLLQ 1713
Query: 425 TLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWP 484
+SR + V D V IRII+A + F+ ++ +WP
Sbjct: 1714 AYMSRIDLPISDYVGDQTSVLDQSIRIIQASIDAMAELGYTAACRTFITLLQCIKSARWP 1773
Query: 485 HETPL 489
+ PL
Sbjct: 1774 TDHPL 1778
Score = 181 (68.8 bits), Expect = 1.2e-234, Sum P(3) = 1.2e-234
Identities = 34/50 (68%), Positives = 42/50 (84%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQI 89
Q FKG K+LNR+QSL+YD AY T+EN+LICAPTGAGKT+ AMLTI + +
Sbjct: 277 QGTFKGYKTLNRMQSLLYDVAYKTSENMLICAPTGAGKTDAAMLTILNAV 326
Score = 170 (64.9 bits), Expect = 1.1e-42, Sum P(5) = 1.1e-42
Identities = 38/94 (40%), Positives = 55/94 (58%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGT+ ++AK Y + + DVLQ+ GRAGRPQ+++SG A I T K Y L
Sbjct: 1467 VVKGTQFFDAKTEGYKDMDLTDVLQMLGRAGRPQFDSSGIARIFTQDSKKAFYKHFLHTG 1526
Query: 213 IPIESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
P+ES L ++L AEV+ GTI +A+ +L
Sbjct: 1527 FPVESTLHKVLDNHLGAEVSAGTIATKQDALDYL 1560
Score = 132 (51.5 bits), Expect = 2.2e-216, Sum P(3) = 2.2e-216
Identities = 23/41 (56%), Positives = 33/41 (80%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLG 133
+ +GT++YN + G +V +GILDVLQIFGRAGRPQ+ + +G
Sbjct: 630 VIKGTQLYNPQEGKFVDLGILDVLQIFGRAGRPQFQDTGIG 670
Score = 127 (49.8 bits), Expect = 5.9e-229, Sum P(3) = 5.9e-229
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
D L + V+LLIIDEVH+LH +RG VIE+LVART RQ+ + +SL RI L
Sbjct: 417 DTELVQKVRLLIIDEVHMLHDERGAVIESLVARTQRQV-----ESTQSLIRIVGL 466
Score = 99 (39.9 bits), Expect = 1.1e-26, Sum P(4) = 1.1e-26
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGR 134
+ +GT+ ++AK Y + + DVLQ+ GRAGRPQ+++S + R
Sbjct: 1467 VVKGTQFFDAKTEGYKDMDLTDVLQMLGRAGRPQFDSSGIAR 1508
Score = 96 (38.9 bits), Expect = 2.9e-25, Sum P(4) = 2.9e-25
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVAR 33
V L+IIDE+HLL GDRGP++E +V+R
Sbjct: 1253 VSLVIIDEIHLLGGDRGPILEIIVSR 1278
Score = 78 (32.5 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 50 NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
N +Q+ ++ YHT N+L+ +PTG+GKT A L +
Sbjct: 1134 NPMQTQLFHVLYHTAANVLLGSPTGSGKTVAAELAM 1169
Score = 65 (27.9 bits), Expect = 7.4e-36, Sum P(5) = 7.4e-36
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 126 QYNTSDLGRTASNYYIKHNDIELFTEHM 153
+ D+GR AS YY+ IE+F E M
Sbjct: 781 ELRAKDVGRIASQYYVLQTSIEIFNELM 808
Score = 45 (20.9 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 611 LLSKKQVITKSEESLIMTIPLSDPLPN 637
L+++ Q +S +SLI + LS LPN
Sbjct: 446 LVARTQRQVESTQSLIRIVGLSATLPN 472
Score = 42 (19.8 bits), Expect = 1.7e-48, Sum P(4) = 1.7e-48
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 630 PLSDPLPNQYLIRAMSDRYLG 650
P P+P + +R +SD Y G
Sbjct: 1950 PRDIPVPQRVNVRVISDSYPG 1970
Score = 41 (19.5 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 126 QYNTSDLGRTASNYYIKHNDIELFTEH 152
+ + + G+ S YY+ H I H
Sbjct: 1623 EVDPTPFGKIMSYYYLAHKTIRYLLSH 1649
>UNIPROTKB|G4N5J1 [details] [associations]
symbol:MGG_06124 "Activating signal cointegrator 1 complex
subunit 3" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 EMBL:CM001233 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GO:GO:0008026 RefSeq:XP_003711991.1
ProteinModelPortal:G4N5J1 EnsemblFungi:MGG_06124T0 GeneID:2684274
KEGG:mgr:MGG_06124 Uniprot:G4N5J1
Length = 1998
Score = 1736 (616.2 bits), Expect = 6.8e-226, Sum P(3) = 6.8e-226
Identities = 351/742 (47%), Positives = 488/742 (65%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATD 305
L I F + L DNLNAE+ALGT+ +I EAV+W+ YSYL+VRMR NP YGIS+ E D
Sbjct: 710 LPIESRFSSKLVDNLNAEIALGTVTSIPEAVQWIGYSYLYVRMRKNPMAYGISWAEFEED 769
Query: 306 PDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMT 365
P+L+Q R TL AA+ L + M+ FN T +L D+GR AS YYI H I++F M+
Sbjct: 770 PELVQRRRTLAIQAARTLQECQMVIFNETTEELRSKDIGRIASQYYILHTSIQVFNTMMS 829
Query: 366 KVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIP--IRGGSENVHGKVNILL 423
+ +L MI+ + EF+ ++ RD E EL + +P + GG + K NILL
Sbjct: 830 PYATEADVLKMIAMSGEFDNIQSRDSEAKELTRMKDSRAAVPCDVAGGIDTPQAKTNILL 889
Query: 424 QTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQW 483
Q +S+ + F+L +DL YV Q RI RA+F I L+R L A E + W
Sbjct: 890 QAYISKVQPEDFALGNDLNYVAQQAGRICRAIFMIALNRRWGHQCLVLLTLAKSIEKRVW 949
Query: 484 PHETPLRQIKLVTNRGYQSPILKPDILNKIEQR-GLTVEDLREMPAKEISYMLRDPHVGD 542
P + PL Q +L P KP ILN+++ + L+VE +R+M A EI ++ + G
Sbjct: 950 PFQHPLHQFEL--------P--KP-ILNQLDAKDSLSVEAMRDMEAAEIGALVHNHGAGT 998
Query: 543 KVKQCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSD 602
K+ P + +E+++ P+ R VL+I L I +F WND+ T +E ++IWV++ ++
Sbjct: 999 KLANMISNFPTVSVEAEIAPLNRDVLRIRLFITPDFRWNDRLHGT-SESYYIWVDNSETS 1057
Query: 603 FIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHL 662
IYH E+F+LS++++ E L TIPLSDPLP Q +RA+SDR+LG+ +SF+HL
Sbjct: 1058 EIYHHEFFILSRRKLYDDHE--LNFTIPLSDPLPTQIYVRAVSDRWLGAETVTPVSFQHL 1115
Query: 663 IVPELHPPHTNLLELQPLPVSALQQPQYESLY--KFSHFNPIQTQIFHCLYHTDNNVLLG 720
I P+ +T+LL LQPLP+ AL+ P E +Y +F +FNP+QTQIFH LYHT NVLLG
Sbjct: 1116 IRPDTESVYTDLLNLQPLPIGALKNPILEHVYAQRFQYFNPMQTQIFHTLYHTPANVLLG 1175
Query: 721 APTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELT 780
+PTGSGKT+AAE+ + F++ P +KVVYIAP+KALV+ERV DW + + K+VELT
Sbjct: 1176 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAPMKALVRERVKDWGARLAQPMGLKLVELT 1235
Query: 781 GDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEV 840
GD TPD + I A VI+TTPEKWDG+SRSWQ R YV+ V+L+IIDEIHLL DRGP+LE+
Sbjct: 1236 GDNTPDTRTIKDADVIITTPEKWDGISRSWQTRGYVRQVSLVIIDEIHLLAGDRGPILEI 1295
Query: 841 IVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISG 900
IVSR+N+I++ TK +VRL+G+STA ANA DL WL + K+G++NFR SVRPVPLE++I G
Sbjct: 1296 IVSRMNYIAASTKNSVRLLGMSTACANATDLGNWLGV-KEGLFNFRHSVRPVPLELYIDG 1354
Query: 901 FPG-KQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKM 959
FP + +CP M MN+P + A+K HSP KPV++FV SRRQTRLTA DLI + E NP+
Sbjct: 1355 FPEVRGFCPLMQSMNRPTFLAVKNHSPTKPVIVFVPSRRQTRLTAKDLINMCGMEDNPRR 1414
Query: 960 WVHTSDAEMDNIVDNIKDSNLK 981
+++ + ++ + +KD LK
Sbjct: 1415 FLNMDEDDLQLNLTRVKDDALK 1436
Score = 321 (118.1 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 80/203 (39%), Positives = 117/203 (57%)
Query: 746 KVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDG 805
K+VY+AP+KAL E + + K A L + E TGD+ I +IVTTPEKWD
Sbjct: 357 KIVYVAPMKALAAE-ITEKLGKRLAWLGIRCREYTGDMHLTKTEIVQTQIIVTTPEKWDV 415
Query: 806 VSRSWQ-NRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTA 864
V+R + VQ V L+IIDE+H+L ++RG VLE +V+R T+ +R+VGLS
Sbjct: 416 VTRKGTGDTELVQKVRLLIIDEVHMLHDERGAVLESLVARTERQVESTQSLIRIVGLSAT 475
Query: 865 LANAKDLATWLNITK-QGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAK-MNKPIYTAIK 922
L N D+A +L + + QG++ F S RPVPLE H G GK + + +++ + ++
Sbjct: 476 LPNFIDVADFLKVNRMQGLFYFDASFRPVPLEQHFIGVKGKAGTKQSRENLDEVAFDKVR 535
Query: 923 QH-SPEKPVMIFVSSRRQTRLTA 944
+ + VM+FV SRR T TA
Sbjct: 536 EMLEKDHQVMVFVHSRRDTLQTA 558
Score = 293 (108.2 bits), Expect = 6.8e-226, Sum P(3) = 6.8e-226
Identities = 54/92 (58%), Positives = 74/92 (80%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y+A+ G +V +GILDVLQIFGRAGRPQ+ +G I T +KL+HYL+ +T+Q+P
Sbjct: 652 KGTQVYSAQEGKFVDLGILDVLQIFGRAGRPQFEDTGIGMICTTADKLSHYLTAVTDQLP 711
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
IES F + L DNLNAE+ALGT+ +I EAV+W+
Sbjct: 712 IESRFSSKLVDNLNAEIALGTVTSIPEAVQWI 743
Score = 191 (72.3 bits), Expect = 6.8e-226, Sum P(3) = 6.8e-226
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHIS 94
+ FKG ++LNR+QSLVY AY TNEN+L+CAPTGAGKT+ AMLTI H I Q+++
Sbjct: 283 RRTFKGYQTLNRMQSLVYPIAYKTNENMLVCAPTGAGKTDAAMLTILHAIGQYVT 337
Score = 173 (66.0 bits), Expect = 4.4e-48, Sum P(3) = 4.4e-48
Identities = 84/353 (23%), Positives = 156/353 (44%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYG--ISYDE---VATDPDLIQ 310
L ++L AE++ TI +A+ +L++++ R+ NP YG I +E +A
Sbjct: 1558 LDNHLCAEISAETIITKQDALDYLTWTFFFRRLHKNPSYYGLEIPVEEQTSIAAQQAAND 1617
Query: 311 HRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDD 370
+ ++I+++ L + + D+ T LG+ S YY+ H I ++
Sbjct: 1618 YIISMIDSSLDELATSKCVEV-YPNGDVDPTPLGKIMSYYYLSHKTIRSLVKNAKAGATF 1676
Query: 371 VGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRG---GSENV---HGKVNILLQ 424
+LS + +A E+++L VR E +L N+ +PI GS + H K +LLQ
Sbjct: 1677 ADVLSWMCRAIEYDELPVRHNE--DLINIELSKA-LPIATDLFGSLPMWDPHVKAFLLLQ 1733
Query: 425 TLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWP 484
+SR + V D V IRII+A ++ + +K ++ +WP
Sbjct: 1734 AHMSRIPLPITDYVGDQTSVLDQAIRIIQASIDVLTELGHLSSCLEMIKLLQCIKSARWP 1793
Query: 485 HETPLRQIKLVTNRGYQSPILKPDILNKIEQRG-LTVEDLREMPAKEISYMLRDPHVG-- 541
++PL + P L+P+ L +G +T+ L +P K++ +++ V
Sbjct: 1794 TDSPLAIL----------PGLEPESLATKGNKGSVTLGKLASLPNKQLGSAIKELGVPAS 1843
Query: 542 --DKVKQCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPF 592
+K ++ +P L + K+ IT L + L +AN D+ YA +
Sbjct: 1844 QQNKFQKAVSMLPDLSV--KVEDITAASLSVVLR-RAN-PLVDREARVYAPKY 1892
Score = 161 (61.7 bits), Expect = 2.2e-42, Sum P(4) = 2.2e-42
Identities = 37/94 (39%), Positives = 55/94 (58%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGT+ Y+AK Y + + DVLQ+ GRAGRPQ++ SG A I T K + Y L
Sbjct: 1488 VVKGTQFYDAKIEGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFTQDSKKDFYKHFLHTG 1547
Query: 213 IPIESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
P+ES+ L ++L AE++ TI +A+ +L
Sbjct: 1548 FPVESSLHTVLDNHLCAEISAETIITKQDALDYL 1581
Score = 131 (51.2 bits), Expect = 8.6e-209, Sum P(3) = 8.6e-209
Identities = 23/41 (56%), Positives = 34/41 (82%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLG 133
+ +GT++Y+A+ G +V +GILDVLQIFGRAGRPQ+ + +G
Sbjct: 650 VIKGTQVYSAQEGKFVDLGILDVLQIFGRAGRPQFEDTGIG 690
Score = 124 (48.7 bits), Expect = 8.1e-219, Sum P(3) = 8.1e-219
Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
D L + V+LLIIDEVH+LH +RG V+E+LVART RQ+ + +SL RI L
Sbjct: 423 DTELVQKVRLLIIDEVHMLHDERGAVLESLVARTERQV-----ESTQSLIRIVGL 472
Score = 100 (40.3 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGR 134
+ +GT+ Y+AK Y + + DVLQ+ GRAGRPQ++ S + R
Sbjct: 1488 VVKGTQFYDAKIEGYKDMDLTDVLQMLGRAGRPQFDNSGVAR 1529
Score = 96 (38.9 bits), Expect = 4.4e-24, Sum P(3) = 4.4e-24
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVAR 33
V L+IIDE+HLL GDRGP++E +V+R
Sbjct: 1274 VSLVIIDEIHLLAGDRGPILEIIVSR 1299
Score = 85 (35.0 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 50 NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
N +Q+ ++ T YHT N+L+ +PTG+GKT A L +
Sbjct: 1155 NPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAM 1190
Score = 68 (29.0 bits), Expect = 7.0e-36, Sum P(4) = 7.0e-36
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 126 QYNTSDLGRTASNYYIKHNDIELFTEHMT 154
+ + D+GR AS YYI H I++F M+
Sbjct: 801 ELRSKDIGRIASQYYILHTSIQVFNTMMS 829
Score = 42 (19.8 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 132 LGRTASNYYIKHNDIELFTEHMTKG 156
LG+ S YY+ H I ++ G
Sbjct: 1649 LGKIMSYYYLSHKTIRSLVKNAKAG 1673
Score = 42 (19.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 611 LLSKKQVITKSEESLIMTIPLSDPLPN 637
L+++ + +S +SLI + LS LPN
Sbjct: 452 LVARTERQVESTQSLIRIVGLSATLPN 478
Score = 41 (19.5 bits), Expect = 8.1e-23, Sum P(2) = 8.1e-23
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 714 DNNVLLGAPTGSG 726
DN+ L GAP G G
Sbjct: 80 DNDYLDGAPNGDG 92
>POMBASE|SPBC13G1.10c [details] [associations]
symbol:mug81 "ATP-dependent RNA helicase Slh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:2000765 "regulation of
cytoplasmic translation" evidence=ISS] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 PomBase:SPBC13G1.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0007126 GO:GO:2000765
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GO:GO:0004004 PIR:T39411
RefSeq:NP_596560.1 ProteinModelPortal:O60072 PRIDE:O60072
EnsemblFungi:SPBC13G1.10c.1 GeneID:2539673 KEGG:spo:SPBC13G1.10c
OMA:RKPTGEG OrthoDB:EOG4H75KM NextBio:20800827 Uniprot:O60072
Length = 1935
Score = 1714 (608.4 bits), Expect = 4.3e-224, Sum P(3) = 4.3e-224
Identities = 349/735 (47%), Positives = 481/735 (65%)
Query: 252 FVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQH 311
F L DNLNAEV+LGT+ NIDEAV WL Y+YL++RMR NP YGI+YDE+ DP L
Sbjct: 699 FTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSK 758
Query: 312 RTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDV 371
R L+ AA L MI +N + L DLGR ASNYYI + + + + +
Sbjct: 759 RRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTVSTLNNLLKSKMSEA 818
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
I++++SQ EF Q+K R+ E EL++L + +R N GKVN++LQ+ +SR
Sbjct: 819 DIIALLSQCSEFSQIKSRENEHRELESLMENSSPCQLRDSISNTSGKVNVILQSYISRAH 878
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
V F+L SD YV QN RI RALFEI + R A A L + +QW E PL Q
Sbjct: 879 VEDFTLTSDTNYVAQNAGRITRALFEIAMSRTWA-SAFTILSLNKSIDRRQWSFEHPLLQ 937
Query: 492 IKLVTNRGYQSPILKPDILNKIEQR--GLTVEDLREMPAKEISYMLRDPHVGDKVKQCAW 549
L P D+ K+E + L++E+L +M E+ ++ + +G VK+
Sbjct: 938 FDL--------P---HDLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGPTVKKFIS 986
Query: 550 EIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEY 609
++PLL I LLP+T+ VL++ L I NF+W D ++ FWI+VED + I H E
Sbjct: 987 KLPLLNINVDLLPLTKNVLRLVLNITPNFNW-DMRYHGNSQMFWIFVEDSNGLEILHHEQ 1045
Query: 610 FLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHP 669
LL+K+ V T L TIP+S+PLP+Q I A+SD++LG+ +S +++ +
Sbjct: 1046 LLLNKRNVSTS--HLLSFTIPVSNPLPSQLYIIAVSDKWLGAETVTPVSLSNVVFHDDSN 1103
Query: 670 PHTNLLELQPLPVSALQQPQYESLY--KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGK 727
P T LL+LQPLP++AL P E + +FS FN +QTQ FH +YHTD N+ +GAPTGSGK
Sbjct: 1104 PITELLDLQPLPITALHDPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAPTGSGK 1163
Query: 728 TIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDI 787
T+AAE+ +R P++KVVYIAP+KALVKERV DW + + ++ELTGD PD+
Sbjct: 1164 TMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGISMIELTGDTNPDV 1223
Query: 788 QAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNF 847
+A+++A++I+TTPEKWDG++RSW++R YVQ V+LII+DEIHLLG DRGPVLE+IVSR+N+
Sbjct: 1224 KAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGSDRGPVLEMIVSRMNY 1283
Query: 848 ISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYC 907
++S T + VR++GLSTA+ANA DLA WLNI + G++NFR SVRPVPLE++I GFPG+ YC
Sbjct: 1284 VASQTNKKVRVLGLSTAVANANDLANWLNI-RDGLFNFRHSVRPVPLEIYIDGFPGRAYC 1342
Query: 908 PRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAE 967
PRM MNKP + AIK HSP +PV+IFVSSRRQTRLTA DLI E NP+ +++ + E
Sbjct: 1343 PRMMSMNKPAFQAIKTHSPTQPVLIFVSSRRQTRLTAKDLIAFCGLEDNPRRFLYMDEEE 1402
Query: 968 MDNIVDNIKDSNLKL 982
++ IV ++D +LKL
Sbjct: 1403 LEMIVSEVEDKSLKL 1417
Score = 315 (115.9 bits), Expect = 4.3e-224, Sum P(3) = 4.3e-224
Identities = 61/106 (57%), Positives = 79/106 (74%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGT++Y+ + G +V +G+LDVLQIFGRAGRPQ+ +S A IIT H+KL+HY+S++T Q
Sbjct: 633 LIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQQ 692
Query: 213 IPIESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
PIES F L DNLNAEV+LGT+ NIDEAV WL +YI N
Sbjct: 693 SPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRN 738
Score = 310 (114.2 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 76/200 (38%), Positives = 117/200 (58%)
Query: 746 KVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDG 805
K+VYIAP+KAL E V + K A L K ELTGD+ I+ ++VTTPEKWD
Sbjct: 342 KIVYIAPMKALAAE-VVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDV 400
Query: 806 VSR-SWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTA 864
V+R S + + V L+IIDE+H+L ++RG V+E +V+R + +++ +R+VGLS
Sbjct: 401 VTRKSVGDTQLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLVETSQQMIRIVGLSAT 460
Query: 865 LANAKDLATWLNITK-QGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMN--KPIYTAI 921
L N D+A +L + + +G++ F + RP P+E H G G P++ N + + +
Sbjct: 461 LPNYLDVADFLGVNRYKGLFYFSSAFRPCPIEQHFIGAKGS---PKIVNSNIDEACFDKV 517
Query: 922 KQHSPE-KPVMIFVSSRRQT 940
+ E VMIFV SR++T
Sbjct: 518 LKLIQEGHQVMIFVHSRKET 537
Score = 203 (76.5 bits), Expect = 2.0e-51, Sum P(4) = 2.0e-51
Identities = 63/243 (25%), Positives = 119/243 (48%)
Query: 251 NFVANLADN-LNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLI 309
+++ + DN LNAE+A GTI I A+ +L+ +Y + R+ NP YG D+ +
Sbjct: 1532 SYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVYYGADGDD---QKSID 1588
Query: 310 QHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLD 369
+ + L+ A L+K+ I + + A T LGR S YY+ H I F + +T+ +
Sbjct: 1589 TYLSKLVVTAFNELEKSACI-YRVNEETYAPTTLGRIVSYYYLFHTTIRNFVQKITENAE 1647
Query: 370 DVGILSMISQAHEFEQLKVR-DEELHELD-----NLTQECCEIPIRGGSENVHGKVNILL 423
L ++++A EF+ L +R +E+L ++ + C +P+ + H K IL
Sbjct: 1648 FDLALQLLAEASEFDDLAIRHNEDLINIEINKSLKYSAACLNLPM----VDAHVKAFILT 1703
Query: 424 QTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQW 483
Q ++R ++ V+D V VIRII++ +++ + + +++ + +
Sbjct: 1704 QAHMARLKLPVDDYVTDTSTVLDQVIRIIQSYIDVSAELGYSHVCLQYISLMQCLKQACY 1763
Query: 484 PHE 486
P E
Sbjct: 1764 PSE 1766
Score = 183 (69.5 bits), Expect = 2.6e-46, Sum P(6) = 2.6e-46
Identities = 43/95 (45%), Positives = 59/95 (62%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGTE Y+AK G Y + + DVLQ+ GRAGRPQ++ SG A I K + Y L +
Sbjct: 1468 IVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKKSFYKHFLHSG 1527
Query: 213 IPIESNFVANLADN-LNAEVALGTIGNIDEAVRWL 246
P+ES ++ + DN LNAE+A GTI I A+ +L
Sbjct: 1528 FPVES-YLHKVLDNHLNAEIATGTIDCIQGAMDFL 1561
Score = 174 (66.3 bits), Expect = 4.3e-224, Sum P(3) = 4.3e-224
Identities = 36/83 (43%), Positives = 54/83 (65%)
Query: 14 DEVHLLHGDRGPVIEA---LVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLIC 70
+E+ + H R P ++ L ++ + ++ F ++LNRIQSLVY AY TNEN+LIC
Sbjct: 240 EEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQSLVYPIAYKTNENMLIC 299
Query: 71 APTGAGKTNVAMLTIAHQIKQHI 93
APTGAGKT+VA+L + I ++
Sbjct: 300 APTGAGKTDVALLAMLQTISNYV 322
Score = 124 (48.7 bits), Expect = 6.2e-204, Sum P(3) = 6.2e-204
Identities = 21/36 (58%), Positives = 31/36 (86%)
Query: 95 QGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTS 130
+GT++Y+ + G +V +G+LDVLQIFGRAGRPQ+ +S
Sbjct: 635 KGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESS 670
Score = 119 (46.9 bits), Expect = 2.7e-218, Sum P(3) = 2.7e-218
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
D L E V+L+IIDEVH+LH +RG VIE+LVART R +
Sbjct: 408 DTQLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLV 445
Score = 99 (39.9 bits), Expect = 1.6e-29, Sum P(4) = 1.6e-29
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 18 LLHGDRGPVIEALVARTL--RQIGQEVFKGVKS-----LNRIQSLVYDTAYHTNENLLIC 70
+ H D P+ E L + L + V +G+ + N +Q+ + T YHT+ N+ +
Sbjct: 1097 VFHDDSNPITELLDLQPLPITALHDPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVG 1156
Query: 71 APTGAGKTNVAML 83
APTG+GKT A L
Sbjct: 1157 APTGSGKTMAAEL 1169
Score = 95 (38.5 bits), Expect = 4.1e-29, Sum P(4) = 4.1e-29
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSL 49
V L+I+DE+HLL DRGPV+E +V+R + + + K V+ L
Sbjct: 1255 VSLIILDEIHLLGSDRGPVLEMIVSR-MNYVASQTNKKVRVL 1295
Score = 63 (27.2 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 121 RAGRPQYNTSDLGRTASNYYIKHNDIELFTEHMTKGTE 158
R Y + LGR S YY+ H I F + +T+ E
Sbjct: 1610 RVNEETYAPTTLGRIVSYYYLFHTTIRNFVQKITENAE 1647
Score = 56 (24.8 bits), Expect = 2.6e-46, Sum P(6) = 2.6e-46
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 131 DLGRTASNYYIKHNDI 146
DLGR ASNYYI + +
Sbjct: 789 DLGRIASNYYINYQTV 804
Score = 45 (20.9 bits), Expect = 2.0e-51, Sum P(4) = 2.0e-51
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 813 RNYVQSVALIIIDEIH-LLGEDRGPVLEVIVSRVNFISSYTKRNVRL 858
R+Y+ A DE++ +L D P + I S VN + SY K N+ +
Sbjct: 1784 RDYLNKFAGNKTDELYQMLCND--PNVFDIESLVNSLISYPKMNIEV 1828
Score = 44 (20.5 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 611 LLSKKQVITKSEESLIMTIPLSDPLPNQYL 640
L+++ Q + ++ + +I + LS LPN YL
Sbjct: 437 LVARTQRLVETSQQMIRIVGLSATLPN-YL 465
Score = 43 (20.2 bits), Expect = 5.1e-07, Sum P(3) = 5.1e-07
Identities = 17/66 (25%), Positives = 36/66 (54%)
Query: 317 ENAAQILDKAHMIRFNMRTRDLAIT---DLGRTASNYYIK-HNDIELFTE-HMTKVLDDV 371
E A +LD + ++++ RD++ + +L + Y + HN L ++ H+T+ L +
Sbjct: 551 EGEADLLDNSQHEKYSLAQRDVSKSKNKEL-KELFKYSMGIHNAGMLRSDRHLTERLFSM 609
Query: 372 GILSMI 377
GIL ++
Sbjct: 610 GILKIL 615
Score = 41 (19.5 bits), Expect = 9.3e-16, Sum P(5) = 9.3e-16
Identities = 19/83 (22%), Positives = 35/83 (42%)
Query: 218 NFVANLADNLNAEVALGTIGNIDE----AVRWLIIYINFVANLADNLNAEVALGTIGNID 273
NFV + +N ++AL + E A+R IN N +L A + +D
Sbjct: 1637 NFVQKITENAEFDLALQLLAEASEFDDLAIRHNEDLINIEIN--KSLKYSAACLNLPMVD 1694
Query: 274 EAVRWLSYSYLHV-RMRINPREY 295
V+ + H+ R+++ +Y
Sbjct: 1695 AHVKAFILTQAHMARLKLPVDDY 1717
>WB|WBGene00013189 [details] [associations]
symbol:Y54E2A.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AL032646 RefSeq:NP_497060.2
ProteinModelPortal:Q9XWI1 SMR:Q9XWI1 PaxDb:Q9XWI1
EnsemblMetazoa:Y54E2A.4 GeneID:190256 KEGG:cel:CELE_Y54E2A.4
UCSC:Y54E2A.4 CTD:190256 WormBase:Y54E2A.4 Uniprot:Q9XWI1
Length = 2017
Score = 1667 (591.9 bits), Expect = 2.4e-219, Sum P(3) = 2.4e-219
Identities = 344/778 (44%), Positives = 495/778 (63%)
Query: 225 DNLNAEVALGTIGNIDEAVRWLI----IYINFVANLADNLNAEVALGTIGNIDEAVRWLS 280
+N + + T ID+ + L+ I F A L DNLNAEVALGT+ +DE V WL+
Sbjct: 699 ENEGHGIIITTRDKIDKYLTMLVHQNPIESQFYARLHDNLNAEVALGTVSTVDEGVEWLT 758
Query: 281 YSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAI 340
Y+Y++ R NP YGI+Y+ + DP+L H +I AA LD+ MIRF+M T L
Sbjct: 759 YTYMYTRALKNPMAYGIAYNAIERDPNLRDHFGNVIREAAMQLDQNKMIRFDMATEYLNS 818
Query: 341 TDLGRTASNYYIKHNDIELFTEH---------MTKVLDDVGILSMISQAHEFEQLKVRDE 391
TDLGR ASN+Y+K+ I+L E T + D ++ +IS + EF LK R+E
Sbjct: 819 TDLGRIASNFYVKYETIQLLNEAEKGVGLPVTFTSFMPDDMVIGLISMSTEFANLKCREE 878
Query: 392 ELHELDNLTQECCEIPIRGGS-ENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIR 450
E+ +L+ L C + +RGG +V GKVN+LLQ+L+SR + +L+S+ YV QN R
Sbjct: 879 EIGDLEELMSYGCMMNVRGGGLASVAGKVNVLLQSLISRTSTRNSALMSEQLYVQQNAGR 938
Query: 451 IIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDIL 510
+ RA+FE+ L + A FL A E + W ++ LRQ + N PI +
Sbjct: 939 LCRAMFEMVLKNGWSQAANAFLGIAKCVEKQMWMNQCALRQFIQIIN----IPITW---I 991
Query: 511 NKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLKI 570
KIE++ DL E+ AK++ YM GD++ +P +++++K PIT T++++
Sbjct: 992 EKIERKKARESDLLELSAKDLGYMFSCD--GDRLYTYLRYLPRMDVQAKFKPITYTIVQV 1049
Query: 571 HLTIKANFSWNDK-NKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTI 629
+T+ F WND+ + + + F++ +E+ + + I H E + K +V + ++L+ TI
Sbjct: 1050 EVTLTPTFIWNDQIHGKSGQQSFYLVLENLNENLIIHQERIGIGKMKVNRQETQNLVFTI 1109
Query: 630 PLSD-PLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQP 688
P+ D L N + +R S+ ++ V MS + I+P+ HT+LL+L+PLP+ L+
Sbjct: 1110 PIVDCQLTNNFQLRLASEYFVTDDVVVPMSLHNCILPKSFKSHTDLLDLEPLPIKTLKNS 1169
Query: 689 QYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVV 748
++E++Y F +FNPIQ Q+F CLY TD + L+GAPTGSGKT+ AE+ FR+ + P KVV
Sbjct: 1170 KFEAIYNFDYFNPIQAQVFFCLYKTDKSALIGAPTGSGKTLCAELAMFRLLQDHPGMKVV 1229
Query: 749 YIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR 808
YIAPLK+LV+ERV DWK KFE + +VVE++GDVTPD + ++++S+++TTPEKWDG+SR
Sbjct: 1230 YIAPLKSLVRERVDDWKKKFEDGMGYRVVEVSGDVTPDPEELAASSILITTPEKWDGISR 1289
Query: 809 SWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFI---SSYTKRNVRLVGLSTAL 865
SW R YV+ V LI++DE+HLLG DRG VLE IVSR+ I S T+ VRL+GLSTAL
Sbjct: 1290 SWATREYVRRVGLIVLDEVHLLGVDRGAVLEAIVSRLKMITRRSHVTEEPVRLLGLSTAL 1349
Query: 866 ANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHS 925
ANA D+A WL I + YNFRPSVRPVP+ VHI GFPG+ YCPRM MNKP Y AI +S
Sbjct: 1350 ANAGDVAEWLGIPDEACYNFRPSVRPVPISVHIQGFPGQHYCPRMGLMNKPAYKAILTYS 1409
Query: 926 PEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLT 983
P KPV+IFVSSRRQTRLTA+ + +L + NPK W++ E+++++ IKD NLKLT
Sbjct: 1410 PRKPVLIFVSSRRQTRLTALAFVNLLIADHNPKQWLNMDMLELEDLMAAIKDENLKLT 1467
Score = 338 (124.0 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 90/287 (31%), Positives = 144/287 (50%)
Query: 669 PPHT--NLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSG 726
PP ++ ++Q + V + + + F N IQ+ +F Y T N+L+ APTG+G
Sbjct: 280 PPSNKGDIEKIQHVYVKDMDELGQKGFKGFEKLNVIQSIVFEQAYKTKENLLICAPTGAG 339
Query: 727 KTIAAEITCFRVFKQCPEA---------KVVYIAPLKALVKERVADWKVKFEARLKKKVV 777
KT A +T + + K++YIAP+KAL E + + A L KV
Sbjct: 340 KTNIAMLTILNTIHEHQNSRGDIMKDDFKIIYIAPMKALATEMTESFGKRL-APLGLKVK 398
Query: 778 ELTGDVTPDIQAISSASVIVTTPEKWDGVSR-SWQNRNYVQSVALIIIDEIHLLGEDRGP 836
ELTGD ++ ++V TPEKWD ++R S + + + V L+IIDE+HLL ++RGP
Sbjct: 399 ELTGDTQLSRNEVADTQMLVLTPEKWDVITRKSTSDNSLINVVRLLIIDEVHLLHDERGP 458
Query: 837 VLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK-QGMYNFRPSVRPVPLE 895
V+E +V+R ++ +R+VGLS L N D+A +L + +G++ F RPVPL
Sbjct: 459 VIETLVARTLRQVEMSQSGIRIVGLSATLPNFIDVARFLRVNPYKGLFFFDGRFRPVPLT 518
Query: 896 VHISGF-PGKQYCPRMAKMNKPIYTAIKQHSPE-KPVMIFVSSRRQT 940
G + + M+ Y + V++FV +R T
Sbjct: 519 QKFIGTRKAGNFRDNLTLMDNVCYDEVVDFVKRGHQVLVFVHTRNGT 565
Score = 290 (107.1 bits), Expect = 2.4e-219, Sum P(3) = 2.4e-219
Identities = 55/115 (47%), Positives = 76/115 (66%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++++A+ G + +G+LDV QIFGRAGRPQ+ GH IIT +K++ YL++L +Q P
Sbjct: 666 KGTDVFDAEKGVFTDLGVLDVQQIFGRAGRPQFENEGHGIIITTRDKIDKYLTMLVHQNP 725
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTI 269
IES F A L DNLNAEVALGT+ +DE V WL + L + + +A I
Sbjct: 726 IESQFYARLHDNLNAEVALGTVSTVDEGVEWLTYTYMYTRALKNPMAYGIAYNAI 780
Score = 201 (75.8 bits), Expect = 2.4e-219, Sum P(3) = 2.4e-219
Identities = 39/81 (48%), Positives = 59/81 (72%)
Query: 14 DEVHLLHGDRGPV--IEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICA 71
+ V++ ++G + I+ + + + ++GQ+ FKG + LN IQS+V++ AY T ENLLICA
Sbjct: 275 ESVYVPPSNKGDIEKIQHVYVKDMDELGQKGFKGFEKLNVIQSIVFEQAYKTKENLLICA 334
Query: 72 PTGAGKTNVAMLTIAHQIKQH 92
PTGAGKTN+AMLTI + I +H
Sbjct: 335 PTGAGKTNIAMLTILNTIHEH 355
Score = 184 (69.8 bits), Expect = 6.2e-50, Sum P(3) = 6.2e-50
Identities = 65/277 (23%), Positives = 133/277 (48%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L +++NAE++ GTI + V +LS +YL+ R+ NP YG+ D ++ +++ T +
Sbjct: 1587 LPNHVNAEISAGTIDSKQAIVEYLSKTYLYRRLFANPNYYGLEED---SEEAMLKFITKI 1643
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
++++ L + I + + T GR AS YY++H + + + +L
Sbjct: 1644 VDDSVAELLASECIHVDSEQDVIKPTPCGRIASVYYLQHETVRFLVKSLHSGCSVENMLK 1703
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHG----KVNILLQTLLSRGR 431
+++ E+ ++ VR E +L N T+ ++ IR S +V G K ++L Q R
Sbjct: 1704 ILTDVPEYAEIPVRHNE--DLIN-TELQKKLRIRF-STSVMGTSACKAHLLFQAHFMR-T 1758
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
V +DL+ V IRI++A+ E+ +N + M + +W + PL
Sbjct: 1759 VLPTDYRTDLKSVLDQCIRILQAMREMARLKNWLSATMNIILLQQMCHSARWHDDHPLLC 1818
Query: 492 IKLVTNRGYQS---PILKPDILNKIE-QRGLTVEDLR 524
+ +++ +S + P + N +E ++ +++D +
Sbjct: 1819 LPHLSHEDARSIGDGMTIPQLQNHLEIEKSTSLDDAK 1855
Score = 178 (67.7 bits), Expect = 2.7e-27, Sum P(5) = 2.7e-27
Identities = 40/106 (37%), Positives = 58/106 (54%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGTE ++ K G YV + DVLQ+ GRAGRPQ++ S A I K Y L
Sbjct: 1517 IVKGTEYFDGKKGKYVDFPVTDVLQMMGRAGRPQFDDSAVAVIYVQDAKKTFYKKFLYEP 1576
Query: 213 IPIESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
P+ES+ + L +++NAE++ GTI + V +L +Y AN
Sbjct: 1577 FPVESSLLPVLPNHVNAEISAGTIDSKQAIVEYLSKTYLYRRLFAN 1622
Score = 140 (54.3 bits), Expect = 6.6e-213, Sum P(3) = 6.6e-213
Identities = 28/38 (73%), Positives = 33/38 (86%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
D +L +V+LLIIDEVHLLH +RGPVIE LVARTLRQ+
Sbjct: 434 DNSLINVVRLLIIDEVHLLHDERGPVIETLVARTLRQV 471
Score = 119 (46.9 bits), Expect = 7.3e-195, Sum P(3) = 7.3e-195
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 66 NLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRP 125
++L C T A N+ AH + + +GT++++A+ G + +G+LDV QIFGRAGRP
Sbjct: 644 SVLFCTATLAWGVNLP----AHAV---VIKGTDVFDAEKGVFTDLGVLDVQQIFGRAGRP 696
Query: 126 QYNTSDLG 133
Q+ G
Sbjct: 697 QFENEGHG 704
Score = 105 (42.0 bits), Expect = 5.3e-24, Sum P(3) = 5.3e-24
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 80 VAMLTIAHQIK--QH--ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTS 130
+A T+A I H I +GTE ++ K G YV + DVLQ+ GRAGRPQ++ S
Sbjct: 1500 IATATLAWGINCPAHLVIVKGTEYFDGKKGKYVDFPVTDVLQMMGRAGRPQFDDS 1554
Score = 93 (37.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 27 IEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIA 86
+E L +TL+ E N IQ+ V+ Y T+++ LI APTG+GKT A L +
Sbjct: 1158 LEPLPIKTLKNSKFEAIYNFDYFNPIQAQVFFCLYKTDKSALIGAPTGSGKTLCAELAMF 1217
Query: 87 HQIKQH 92
++ H
Sbjct: 1218 RLLQDH 1223
Score = 83 (34.3 bits), Expect = 3.8e-18, Sum P(3) = 3.8e-18
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
V L+++DEVHLL DRG V+EA+V+R L+ I
Sbjct: 1300 VGLIVLDEVHLLGVDRGAVLEAIVSR-LKMI 1329
Score = 76 (31.8 bits), Expect = 3.1e-28, Sum P(4) = 3.1e-28
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 128 NTSDLGRTASNYYIKHNDIELFTE 151
N++DLGR ASN+Y+K+ I+L E
Sbjct: 817 NSTDLGRIASNFYVKYETIQLLNE 840
Score = 52 (23.4 bits), Expect = 2.2e-11, Sum P(4) = 2.2e-11
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 133 GRTASNYYIKHNDIELFTEHMTKGTEMYN 161
GR AS YY++H + + + G + N
Sbjct: 1672 GRIASVYYLQHETVRFLVKSLHSGCSVEN 1700
Score = 50 (22.7 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 315 LIENAAQILDKAHMIRFNMRTRDLAITDLGRTA 347
L E A IL+K + I F +++++LA + R A
Sbjct: 117 LFELAGDILEKRNKIVFEVKSQELAKVEHARQA 149
Score = 43 (20.2 bits), Expect = 3.0e-35, Sum P(3) = 3.0e-35
Identities = 27/94 (28%), Positives = 39/94 (41%)
Query: 483 WPHETPLRQIKLVTNRGYQSPI---LKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPH 539
WP ++ ++LV +RG I KP + E L + R P K S M P
Sbjct: 1885 WPIIN-MKIMQLVDSRGNCVDIDETKKPVKVTAGEVYKLRIVMERVGPGKNNSSM-HLPQ 1942
Query: 540 VGDKVKQCAWEIPLLEIESKLLPITRTVLKIHLT 573
K KQ W I + + + ++ T TV H T
Sbjct: 1943 -WPKPKQAGWIIVVGNVSADMILNTTTVTGSHST 1975
>CGD|CAL0003134 [details] [associations]
symbol:orf19.3980 species:5476 "Candida albicans" [GO:0042788
"polysomal ribosome" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 CGD:CAL0003134 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AACQ01000012 EMBL:AACQ01000011
RefSeq:XP_721889.1 RefSeq:XP_722050.1 ProteinModelPortal:Q5AK41
STRING:Q5AK41 GeneID:3636313 GeneID:3636419 KEGG:cal:CaO19.11463
KEGG:cal:CaO19.3980 Uniprot:Q5AK41
Length = 1929
Score = 1660 (589.4 bits), Expect = 1.2e-217, Sum P(3) = 1.2e-217
Identities = 327/735 (44%), Positives = 482/735 (65%)
Query: 252 FVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQH 311
F L DNLNAE++LGT+ N++EAV+WL Y+Y+ VRM+ NP YGI + E+ DP L
Sbjct: 679 FGDKLIDNLNAEISLGTVTNVEEAVQWLGYTYMMVRMKQNPFAYGIDWKELQEDPSLTNR 738
Query: 312 RTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDV 371
R ++ A+ L MI F+ + DLGR AS++Y+ N +E+F + M + +
Sbjct: 739 RREMVFTCAKRLHHLQMIIFDENSEAFTPKDLGRIASDFYLLSNSVEIFNQMMNPLATEA 798
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
ILSMIS + EF+ +K R+EE EL L +E + G ++ GK NILLQ +S+
Sbjct: 799 DILSMISMSSEFDSIKFREEESKELKQLVEEDAPCQVAGDVDSPQGKTNILLQAFVSQAH 858
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
+ +L+SD YV QN RI R+LF I ++R + L + + W E P+ Q
Sbjct: 859 IKDSALISDSNYVAQNSARICRSLFLIAMNRRWGKLMNIMLSLCKSIDKRIWAFEHPMTQ 918
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI 551
+L P+L+ I+ + ++ LR+M A E+ ++ + +G + + +
Sbjct: 919 FEL------PQPVLR-----NIKAKNPSMLALRDMEAGELGDLVHNFKMGSILYKLIGKF 967
Query: 552 PLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFL 611
P ++IES++ PIT V+++H+ ++ +F W+DK + A+ FW+ VE+ D I H E F+
Sbjct: 968 PFIDIESEIFPITTNVMRVHVDLQPDFVWDDKYHGS-AQFFWLTVEESDRSEILHVEKFI 1026
Query: 612 LSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPH 671
L KKQ+ + E + IPLSDPLP Q ++R +SD ++GS H++SF+HLI P
Sbjct: 1027 LHKKQLHSPHEMDFM--IPLSDPLPAQVVVRVVSDSWIGSETVHAVSFQHLIRPSNETIK 1084
Query: 672 TNLLELQPLPVSALQQPQYESLY--KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTI 729
T+LL LQPLPV+AL P E +Y KF +FNP+QT +FH LY+T+++V +G+PTGSGKT+
Sbjct: 1085 TDLLHLQPLPVTALHNPDVEQIYSSKFKYFNPMQTMVFHSLYNTNSSVFVGSPTGSGKTV 1144
Query: 730 AAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA 789
AE+ + F + P +KVVYIAP+KALV+ERV DW+ + ++VELTGD P IQ
Sbjct: 1145 VAELAIWHAFNEFPSSKVVYIAPMKALVRERVDDWRERICKNTSHRLVELTGDSLPTIQE 1204
Query: 790 ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFIS 849
+ A +I+TTPEK+DG+SR+WQ R +VQ V+L+I+DEIHLL DRGP+LE+IVSR+N+IS
Sbjct: 1205 VKEADIIITTPEKFDGISRNWQTRKFVQQVSLVIMDEIHLLASDRGPILEMIVSRMNYIS 1264
Query: 850 SYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGK-QYCP 908
S TK+ +RL+G+STA++NA D+A WL + K G++NF SVRPVPL+++I GFP +CP
Sbjct: 1265 SQTKKPIRLLGMSTAVSNAFDMAGWLGV-KNGLFNFPQSVRPVPLQMYIDGFPENLAFCP 1323
Query: 909 RMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEM 968
M MNKP + AIKQHSP KPV+IFV+SRRQTRLTA+DLI + E+NP+ ++ SD E+
Sbjct: 1324 LMKTMNKPAFMAIKQHSPNKPVLIFVASRRQTRLTALDLIHLCGMESNPRRFLKISDDEL 1383
Query: 969 DNIVDNIKDSNLKLT 983
+I++N+KD L+L+
Sbjct: 1384 QDILENVKDDTLRLS 1398
Score = 342 (125.4 bits), Expect = 4.9e-41, Sum P(2) = 4.9e-41
Identities = 94/229 (41%), Positives = 129/229 (56%)
Query: 744 EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKW 803
E K+VY+APLKAL E V + K + L V ELTGD+ Q I + +IVTTPEKW
Sbjct: 317 EFKIVYVAPLKALAAEIVEKYSKKLKW-LGINVRELTGDMQLTRQEIINTQIIVTTPEKW 375
Query: 804 DGVSR-SWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862
D V+R S + V V L+IIDE+HLL EDRG V+E +V+R T+ +R+VGLS
Sbjct: 376 DVVTRKSTGDSELVAKVKLLIIDEVHLLHEDRGSVIETLVARTLRQVESTQSMIRVVGLS 435
Query: 863 TALANAKDLATWLNITKQ-GMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMN--KPIYT 919
L N D+A +L + + GM+ F S RPVPL+ I G GK ++A+ N K Y
Sbjct: 436 ATLPNYMDVADFLGVNRSVGMFYFDQSFRPVPLQQQILGVRGKAGS-KLARENIDKVSYE 494
Query: 920 AIKQHSPEK-PVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAE 967
+ + + VM+FV SR+ T TA I +A E + S+A+
Sbjct: 495 KLADYINQGLQVMVFVHSRKDTVNTARTFIR-MAVEYGESEIFNCSEAD 542
Score = 289 (106.8 bits), Expect = 1.2e-217, Sum P(3) = 1.2e-217
Identities = 54/94 (57%), Positives = 72/94 (76%)
Query: 153 MTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQ 212
+ KGT++Y++K G +V +GI DV+QIFGRAGRPQY G + T +KL+HY+SLLT Q
Sbjct: 613 IVKGTQVYDSKAGGFVDLGISDVIQIFGRAGRPQYEKFGTGILCTTSDKLDHYVSLLTQQ 672
Query: 213 IPIESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
PIES F L DNLNAE++LGT+ N++EAV+WL
Sbjct: 673 HPIESKFGDKLIDNLNAEISLGTVTNVEEAVQWL 706
Score = 193 (73.0 bits), Expect = 1.2e-217, Sum P(3) = 1.2e-217
Identities = 35/56 (62%), Positives = 46/56 (82%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQ 95
Q FK K+LN++QSLVY AY+TNEN+L+CAPTGAGKT+VA+LTI H I Q +++
Sbjct: 246 QGTFKNYKNLNKMQSLVYPVAYNTNENMLVCAPTGAGKTDVALLTILHTINQFVTE 301
Score = 168 (64.2 bits), Expect = 2.6e-41, Sum P(4) = 2.6e-41
Identities = 37/98 (37%), Positives = 55/98 (56%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT+ ++AK Y + + D+LQ+ GRAGRP Y+TSG A + T K Y L P
Sbjct: 1450 KGTQFFDAKIEAYRDMDLTDILQMMGRAGRPAYDTSGIAIVYTKESKKVFYKHFLNLGFP 1509
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAV---RWLIIY 249
+ES+ L +++ AE++ GTI EA+ W +Y
Sbjct: 1510 VESSLHKVLDNHIGAEISAGTITTRQEAMDFLTWTFLY 1547
Score = 163 (62.4 bits), Expect = 7.2e-47, Sum P(3) = 7.2e-47
Identities = 71/305 (23%), Positives = 135/305 (44%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L +++ AE++ GTI EA+ +L++++L+ R NP YGI E + + Q+ L
Sbjct: 1518 LDNHIGAEISAGTITTRQEAMDFLTWTFLYRRAHNNPTYYGI---EDISQYGISQYLAKL 1574
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
I++ + L ++ + + + +L T +S YY+ H + F ++T + L
Sbjct: 1575 IDSTIENLVESKCV-YTGGSDELHATPFLEISSYYYLSHLTMRNFVNNVTPDFEFRDCLR 1633
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQ-ECCEIPIRG-GSENV---HGKVNILLQTLLSRG 430
++ QA E+ +L R E EL N+ + P E + H K +L+Q +SR
Sbjct: 1634 VLCQATEYNELATRHGE--ELINMEMSQAMRYPAEDLNCEFIWDPHVKAYLLIQAYMSRV 1691
Query: 431 RVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETP-- 488
+ D V +RI++A + + F++ + + W + P
Sbjct: 1692 ELPIADYAQDTISVLDQALRILQAYIDAAAELGYFKVVMSFIQLMQCIKQRYWYDDDPVS 1751
Query: 489 -LRQIKLV----TNRGY-QSPILKPDILNKIEQR-GLTVEDLREMPAKEISYMLRDPHVG 541
L +KL+ TN+ Q +KP L + ++ G+ E++ KE +Y D
Sbjct: 1752 ALPGLKLISEGKTNQTLKQLGSMKPGQLFGLAKKLGVKGENIEN---KETNYDYGDGDSD 1808
Query: 542 DKVKQ 546
+ K+
Sbjct: 1809 EMAKK 1813
Score = 144 (55.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 48/166 (28%), Positives = 78/166 (46%)
Query: 660 KHLIVP-ELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVL 718
+ L++P + P+ + E + +S L + + + N +Q+ ++ Y+T+ N+L
Sbjct: 215 EELVIPYPENKPNKWISEKNLVKISDLDFLCQGTFKNYKNLNKMQSLVYPVAYNTNENML 274
Query: 719 LGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLK-------------ALVKERVADWK 765
+ APTG+GKT A +T Q V + A +K A+
Sbjct: 275 VCAPTGAGKTDVALLTILHTINQFVTETVTEDGDVSVDIDYDEFKIVYVAPLKALAAEIV 334
Query: 766 VKFEARLKK---KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSR 808
K+ +LK V ELTGD+ Q I + +IVTTPEKWD V+R
Sbjct: 335 EKYSKKLKWLGINVRELTGDMQLTRQEIINTQIIVTTPEKWDVVTR 380
Score = 134 (52.2 bits), Expect = 2.0e-211, Sum P(3) = 2.0e-211
Identities = 29/38 (76%), Positives = 30/38 (78%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
D L VKLLIIDEVHLLH DRG VIE LVARTLRQ+
Sbjct: 385 DSELVAKVKLLIIDEVHLLHEDRGSVIETLVARTLRQV 422
Score = 121 (47.7 bits), Expect = 6.3e-200, Sum P(3) = 6.3e-200
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLG 133
I +GT++Y++K G +V +GI DV+QIFGRAGRPQY G
Sbjct: 613 IVKGTQVYDSKAGGFVDLGISDVIQIFGRAGRPQYEKFGTG 653
Score = 101 (40.6 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 18 LLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGK 77
LLH PV AL + QI FK N +Q++V+ + Y+TN ++ + +PTG+GK
Sbjct: 1087 LLHLQPLPVT-ALHNPDVEQIYSSKFK---YFNPMQTMVFHSLYNTNSSVFVGSPTGSGK 1142
Query: 78 TNVAMLTIAHQIKQ 91
T VA L I H +
Sbjct: 1143 TVVAELAIWHAFNE 1156
Score = 100 (40.3 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+LI T A N+ AH + I +GT+ ++AK Y + + D+LQ+ GRAGRP
Sbjct: 1429 ILIATSTLAWGVNLP----AHLV---IIKGTQFFDAKIEAYRDMDLTDILQMMGRAGRPA 1481
Query: 127 YNTSDLGRTASNYYIKHNDIELFTEH-MTKGTEMYNAKHGCYV-HIG 171
Y+TS + Y K + ++F +H + G + ++ H HIG
Sbjct: 1482 YDTSGIAIV----YTKESK-KVFYKHFLNLGFPVESSLHKVLDNHIG 1523
Score = 92 (37.4 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSL 49
V L+I+DE+HLL DRGP++E +V+R + I + K ++ L
Sbjct: 1234 VSLVIMDEIHLLASDRGPILEMIVSR-MNYISSQTKKPIRLL 1274
Score = 67 (28.6 bits), Expect = 9.4e-36, Sum P(4) = 9.4e-36
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTEHM 153
+ DLGR AS++Y+ N +E+F + M
Sbjct: 765 FTPKDLGRIASDFYLLSNSVEIFNQMM 791
Score = 48 (22.0 bits), Expect = 3.3e-17, Sum P(3) = 3.3e-17
Identities = 29/137 (21%), Positives = 58/137 (42%)
Query: 123 GRPQYNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIFGRA 182
G + + + +S YY+ H + F ++T E + V + ++ R
Sbjct: 1592 GSDELHATPFLEISSYYYLSHLTMRNFVNNVTPDFEFRDCLR---VLCQATEYNELATRH 1648
Query: 183 GRPQYNTSGHATIITPHEKLN-HYL--SLLTNQIPIESNFVANLADNLNAEVALGTIGNI 239
G N + P E LN ++ + + I++ +++ + + A+ A TI +
Sbjct: 1649 GEELINMEMSQAMRYPAEDLNCEFIWDPHVKAYLLIQA-YMSRVELPI-ADYAQDTISVL 1706
Query: 240 DEAVRWLIIYINFVANL 256
D+A+R L YI+ A L
Sbjct: 1707 DQALRILQAYIDAAAEL 1723
Score = 38 (18.4 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 620 KSEESLIMTIPLSDPLPN 637
+S +S+I + LS LPN
Sbjct: 423 ESTQSMIRVVGLSATLPN 440
Score = 37 (18.1 bits), Expect = 7.6e-28, Sum P(4) = 7.6e-28
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 214 PIESNFVANLADNLNAEVALGTIGN 238
P E +F+ L+D L A+V + + +
Sbjct: 1035 PHEMDFMIPLSDPLPAQVVVRVVSD 1059
>ZFIN|ZDB-GENE-081105-64 [details] [associations]
symbol:si:ch211-251j10.5 "si:ch211-251j10.5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 ZFIN:ZDB-GENE-081105-64 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
HOVERGEN:HBG051896 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 GO:GO:0008026 EMBL:BX640472
EMBL:CR376723 IPI:IPI00608684 RefSeq:NP_001116729.1
UniGene:Dr.32574 SMR:B0S754 Ensembl:ENSDART00000109885
GeneID:799690 KEGG:dre:799690 NextBio:20933935 Uniprot:B0S754
Length = 2134
Score = 1603 (569.3 bits), Expect = 1.6e-210, Sum P(4) = 1.6e-210
Identities = 317/739 (42%), Positives = 470/739 (63%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATD 305
L I V LAD LNAE+ LG + N +AV WL Y+YL+VRM NP YG+S+D+ + D
Sbjct: 884 LPIESQMVGKLADMLNAEIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSID 943
Query: 306 PDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMT 365
P L + R L+ AA +L+K ++++++ R+ +TDLGR AS++YI H I + + +
Sbjct: 944 PLLERRRMDLVHTAATVLEKNNLVKYDKRSGSFQVTDLGRIASHFYITHESIMTYNQLLK 1003
Query: 366 KVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQT 425
L ++ + + S + EF + VR+EE EL L + IP++ E K+N+LLQ
Sbjct: 1004 PTLSEIELFRVFSLSSEFRNITVREEEKLELQKLLERV-PIPVKESIEEPSAKINVLLQA 1062
Query: 426 LLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPH 485
+S+ ++ F+L++D+ YV Q+ R++RA+FEI L R A + + L M + + W
Sbjct: 1063 YISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQS 1122
Query: 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVK 545
+PLRQ + L +++ KIE++ E L ++ EI ++R P +G +
Sbjct: 1123 MSPLRQFRK----------LPEEVIKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIH 1172
Query: 546 QCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIY 605
+ + P L++ L PITR+ LK+ LTI +F W+DK + +E FWI VED DS+ +
Sbjct: 1173 KYVHQFPKLDLAVHLQPITRSTLKVELTITPDFQWDDKIHGS-SEAFWILVEDVDSEVVL 1231
Query: 606 HSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVP 665
H EYFLL K + E + +P+ +PLP QY IR SDR+L Q +SF+HLI+P
Sbjct: 1232 HHEYFLLKAKYA--QDEHLVTFFVPVFEPLPPQYFIRIASDRWLSCETQLPVSFRHLILP 1289
Query: 666 ELHPPHTNLLELQPLPVSALQQPQYESLYK-FSHFNPIQTQIFHCLYHTDNNVLLGAPTG 724
E +PP T LL+LQPLPVSAL+ +ESLY+ F FNPIQTQ+F+ +Y++D+NV +GAPTG
Sbjct: 1290 EKYPPPTELLDLQPLPVSALRNGAFESLYQNFPFFNPIQTQVFNAVYNSDDNVFVGAPTG 1349
Query: 725 SGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVT 784
SGKTI AE R+ E + VYI P++AL ++ DW KF+ L KKVV LTG+ +
Sbjct: 1350 SGKTICAEFAILRMLLHNAEGRCVYITPMEALAEQVFLDWHQKFQENLNKKVVLLTGETS 1409
Query: 785 PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSR 844
D++ + +IV+TP+KWD +SR W+ R VQ+V+L IIDE+HL+G D GPVLEVI SR
Sbjct: 1410 TDLKLLGKGDIIVSTPDKWDILSRRWKQRKNVQNVSLFIIDEVHLIGGDNGPVLEVICSR 1469
Query: 845 VNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGK 904
+ +ISS +R +R+V LS++L+NAKD+A WL + +NF P+VRPVPLE+HI GF
Sbjct: 1470 MRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSTTATFNFHPNVRPVPLELHIQGFNVS 1529
Query: 905 QYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTS 964
R+ M KP+Y AI +HSP KPV++FV SRRQTRLTAID++T A + P+ ++H++
Sbjct: 1530 HTQTRLLSMAKPVYHAIMKHSPSKPVLVFVPSRRQTRLTAIDILTFCAADVVPQRFLHST 1589
Query: 965 DAEMDNIVDNIKDSNLKLT 983
+ ++ ++N+ D LK T
Sbjct: 1590 EKDLVPFMENLSDVTLKET 1608
Score = 453 (164.5 bits), Expect = 9.1e-37, Sum P(2) = 9.1e-37
Identities = 118/309 (38%), Positives = 172/309 (55%)
Query: 650 GSVVQHSMSFKHLIVPELHP-P---HTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQ 705
GS + ++ + VP L P P L+ ++ LP A Q +E F N IQ++
Sbjct: 430 GSFRKQRKGYEEVHVPALKPKPFGDEETLVGIEKLPKYA--QAGFEG---FKSLNRIQSK 484
Query: 706 IFHCLYHTDNNVLLGAPTGSGKTIAAEITCFR-VFKQC--------PEAKVVYIAPLKAL 756
+F TD N+L+ APTG+GKT A + R + K + K++YIAP+++L
Sbjct: 485 LFKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVADFKIIYIAPMRSL 544
Query: 757 VKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYV 816
V+E V + + A V ELTGD + I++ +IV TPEKWD ++R R Y
Sbjct: 545 VQEMVGSFGKRL-ASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGERTYT 603
Query: 817 QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLN 876
Q V LIIIDEIHLL +DRGPVLE +++R T+ +VRL+GLS L N +D+AT L
Sbjct: 604 QLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVATCLR 663
Query: 877 IT-KQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVS 935
+ +G++ F S RPVPLE G K+ R MN+ +Y I +H+ + V++FV
Sbjct: 664 VDPSKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVH 723
Query: 936 SRRQTRLTA 944
SR++T TA
Sbjct: 724 SRKETGKTA 732
Score = 268 (99.4 bits), Expect = 1.6e-210, Sum P(4) = 1.6e-210
Identities = 50/104 (48%), Positives = 70/104 (67%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y+ + G + +G LD+LQ+ GRAGRPQY++ G +IT H +L +YLSLL Q+P
Sbjct: 826 KGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLP 885
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
IES V LAD LNAE+ LG + N +AV WL +Y+ + N
Sbjct: 886 IESQMVGKLADMLNAEIVLGNVQNAKDAVNWLGYTYLYVRMLRN 929
Score = 266 (98.7 bits), Expect = 1.6e-53, Sum P(3) = 1.6e-53
Identities = 99/416 (23%), Positives = 188/416 (45%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L D+ NAE+ T+ N +AV +L++++L+ RM NP Y + + + L H + L
Sbjct: 1728 LHDHFNAEIVTKTVENKQDAVDYLTWTFLYRRMTQNPNYYNL---QGMSHRHLSDHLSEL 1784
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
+EN Q L+++ I D+A +LG A+ YYI + IELF+ + G++
Sbjct: 1785 VENTLQDLEQSKCISIEDEM-DVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIE 1843
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSF 435
+IS A E++ + +R E L L Q+ + H K N+LLQ LSR ++++
Sbjct: 1844 IISNAAEYKNIPIRHHEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA- 1902
Query: 436 SLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAA-RFLKFALMFETKQWPHETPLRQIKL 494
L SD E + +R+I+A ++ L N + A ++ A M W ++ LRQ+
Sbjct: 1903 ELQSDTEEILSKAVRLIQACVDV-LSSNGWLSPALAAMELAQMVTQAMWSKDSYLRQL-- 1959
Query: 495 VTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR--DPHVGDKVKQCAWEI 551
P +++ + +G+ ++ D+ EM ++ + +L+ D V D + C
Sbjct: 1960 --------PHFTSELIKRCTDKGVESIFDIMEMEDEDRTGLLQLSDVQVADVARFCN-RY 2010
Query: 552 PLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEP---------FWIWVEDPDSD 602
P +E+ +++ + ++ ++ P +W+ + DP S+
Sbjct: 2011 PNIELSYEVVDKDDIKSGSPVVVQVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDPKSN 2070
Query: 603 FIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMS 658
+ + L +K + L P+ + Y + MSD Y+G ++ S
Sbjct: 2071 SLISIKRLTLQQKAKV-----KLDFVAPVVGV--HNYTLYFMSDAYMGCDQEYKFS 2119
Score = 177 (67.4 bits), Expect = 1.6e-210, Sum P(4) = 1.6e-210
Identities = 38/72 (52%), Positives = 50/72 (69%)
Query: 28 EALVA-RTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIA 86
E LV L + Q F+G KSLNRIQS ++ T T+ENLL+CAPTGAGKTNVA++ +
Sbjct: 456 ETLVGIEKLPKYAQAGFEGFKSLNRIQSKLFKTTMETDENLLVCAPTGAGKTNVALMAML 515
Query: 87 HQIKQHISQ-GT 97
+I +HI+ GT
Sbjct: 516 REIGKHINMDGT 527
Score = 145 (56.1 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 34/102 (33%), Positives = 49/102 (48%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T+ YN K YV I DVLQ+ G+A RP + G I+ K + + L +P+E
Sbjct: 1662 TQYYNGKIHAYVDYPIYDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVE 1721
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAV---RWLIIYINFVAN 255
S+ L D+ NAE+ T+ N +AV W +Y N
Sbjct: 1722 SHLDHCLHDHFNAEIVTKTVENKQDAVDYLTWTFLYRRMTQN 1763
Score = 135 (52.6 bits), Expect = 4.3e-206, Sum P(4) = 4.3e-206
Identities = 23/34 (67%), Positives = 32/34 (94%)
Query: 5 TELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
T+LV+L+IIDE+HLLH DRGPV+E+L+ART+R +
Sbjct: 603 TQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNV 636
Score = 117 (46.2 bits), Expect = 3.4e-190, Sum P(4) = 3.4e-190
Identities = 35/123 (28%), Positives = 66/123 (53%)
Query: 49 LNRI-QSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCY 107
+ R+ ++LV D + +L+ T A N+ AH + I +GT++Y+ + G +
Sbjct: 786 MTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP----AHTV---IIKGTQVYSPEKGRW 838
Query: 108 VHIGILDVLQIFGRAGRPQYNTSDLGRTASN-----YYIK--HNDIELFTEHMTKGTEMY 160
+G LD+LQ+ GRAGRPQY++ G ++ YY+ + + + ++ + K +M
Sbjct: 839 TELGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLADML 898
Query: 161 NAK 163
NA+
Sbjct: 899 NAE 901
Score = 95 (38.5 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
V L IIDEVHL+ GD GPV+E + +R +R I ++ + ++ + SL
Sbjct: 1444 VSLFIIDEVHLIGGDNGPVLEVICSR-MRYISSQIERPIRIVALSSSL 1490
Score = 90 (36.7 bits), Expect = 8.5e-17, Sum P(4) = 8.5e-17
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEM 99
+ +++ N IQ+ V++ Y++++N+ + APTG+GKT A I + H ++G +
Sbjct: 1315 ESLYQNFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLL-HNAEGRCV 1373
Query: 100 Y 100
Y
Sbjct: 1374 Y 1374
Score = 74 (31.1 bits), Expect = 1.2e-10, Sum P(5) = 1.2e-10
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGR 134
I T+ YN K YV I DVLQ+ G+A RP + D GR
Sbjct: 1658 IVMDTQYYNGKIHAYVDYPIYDVLQMVGKANRPLQD--DEGR 1697
Score = 61 (26.5 bits), Expect = 3.1e-18, Sum P(4) = 3.1e-18
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 121 RAGRPQYNTSDLGRTASNYYIKHNDIELFTE 151
R+G + +DLGR AS++YI H I + +
Sbjct: 972 RSG--SFQVTDLGRIASHFYITHESIMTYNQ 1000
Score = 54 (24.1 bits), Expect = 1.2e-10, Sum P(5) = 1.2e-10
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 131 DLGRTASNYYIKHNDIELFTEHMTKGTEM 159
+LG A+ YYI + IELF+ + T++
Sbjct: 1810 NLGMIAAYYYINYTTIELFSMSLNAKTKV 1838
Score = 41 (19.5 bits), Expect = 6.8e-12, Sum P(4) = 6.8e-12
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 33 RTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKT 78
R R++ +EV K ++ N +YD H LI P GKT
Sbjct: 1127 RQFRKLPEEVIKKIEKKNFPFERLYDLN-HNEIGELIRMPK-MGKT 1170
Score = 39 (18.8 bits), Expect = 1.6e-210, Sum P(4) = 1.6e-210
Identities = 11/53 (20%), Positives = 25/53 (47%)
Query: 929 PVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLK 981
PV++ V R+ +T + + + WV D + ++++ +IK L+
Sbjct: 2030 PVVVQVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLI-SIKRLTLQ 2081
Score = 37 (18.1 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAE 732
P+++ + HCL H N + T K A +
Sbjct: 1719 PVESHLDHCL-HDHFNAEIVTKTVENKQDAVD 1749
>UNIPROTKB|E1BH78 [details] [associations]
symbol:LOC100850262 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
NextBio:20869492 Uniprot:E1BH78
Length = 2136
Score = 1593 (565.8 bits), Expect = 1.4e-209, Sum P(4) = 1.4e-209
Identities = 317/740 (42%), Positives = 475/740 (64%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATD 305
L I V+ L D LNAEV LG + N +AV WL Y+YL++RM +P YGIS+D++ D
Sbjct: 887 LPIESQMVSKLPDMLNAEVVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGD 946
Query: 306 PDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMT 365
P L Q R L+ AA +LDK ++++++ +T + +T+LGR AS+YYI ++ ++ + + +
Sbjct: 947 PLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLK 1006
Query: 366 KVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQT 425
L ++ + + S + EF+ + VR+EE EL L + IP++ E K+N+LLQ
Sbjct: 1007 PTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERV-PIPVKESIEEPSAKINVLLQA 1065
Query: 426 LLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPH 485
+S+ ++ F+L++D+ YV Q+ R++RA+FEI L+R A + + L M + + W
Sbjct: 1066 FISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQS 1125
Query: 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVK 545
PLRQ + L +++ KIE++ E L ++ EI ++R P +G +
Sbjct: 1126 MCPLRQFRK----------LPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIH 1175
Query: 546 QCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIY 605
+ P LE+ L PITR+ LK+ LTI +F W++K + +E FWI VED DS+ I
Sbjct: 1176 KYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGS-SEAFWILVEDVDSEVIL 1234
Query: 606 HSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVP 665
H EYFLL K + E + +P+ +PLP QY IR +SDR+L Q +SF+HLI+P
Sbjct: 1235 HHEYFLLKAKYA--QDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILP 1292
Query: 666 ELHPPHTNLLELQPLPVSALQQPQYESLY--KFSHFNPIQTQIFHCLYHTDNNVLLGAPT 723
E +PP T LL+LQPLPVSAL+ +ESLY KF FNPIQTQ+F+ +Y++D+NV +GAPT
Sbjct: 1293 EKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPT 1352
Query: 724 GSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDV 783
GSGKTI AE R+ Q E + VYI P++AL ++ DW KF+ RL KKVV LTG+
Sbjct: 1353 GSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLSKKVVLLTGET 1412
Query: 784 TPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVS 843
+ D++ + SVIV+TPEKWD +SR W+ R VQ++ L ++DE+HL+G + GPVLEVI S
Sbjct: 1413 STDLKLLGKGSVIVSTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICS 1472
Query: 844 RVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPG 903
R+ +ISS +R +R+V LS++L+NAKD+A WL + +NF P+VRPVPLE+HI GF
Sbjct: 1473 RMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNI 1532
Query: 904 KQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHT 963
R+ M KP+Y AI +HSP+KPV++FV SR+QTRLTAID++T A + + ++H
Sbjct: 1533 SHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHC 1592
Query: 964 SDAEMDNIVDNIKDSNLKLT 983
++ ++ ++ + DS LK T
Sbjct: 1593 TEKDLIPYLEKLSDSTLKET 1612
Score = 472 (171.2 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 118/306 (38%), Positives = 171/306 (55%)
Query: 650 GSVVQHSMSFKHLIVPELHP-PHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFH 708
GS + ++ + VP L P P + E Q LPV L + F N IQ++++
Sbjct: 433 GSFRRQRKGYEEVHVPALKPKPFGS--EEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYR 490
Query: 709 CLYHTDNNVLLGAPTGSGKTIAAEITCFR-VFKQC--------PEAKVVYIAPLKALVKE 759
TD N+LL APTG+GKT A + R + K + K++YIAP+++LV+E
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 760 RVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSV 819
V + + A V ELTGD + IS+ +IV TPEKWD ++R R Y Q V
Sbjct: 551 MVGSFGKRL-ATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLV 609
Query: 820 ALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK 879
L+I+DEIHLL +DRGPVLE +V+R T+ +VRL+GLS L N +D+AT+L +
Sbjct: 610 RLVILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDP 669
Query: 880 -QGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRR 938
+G++ F S RPVPLE G K+ R MN+ +Y I +H+ + V++FV SR+
Sbjct: 670 AKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRK 729
Query: 939 QTRLTA 944
+T TA
Sbjct: 730 ETGKTA 735
Score = 265 (98.3 bits), Expect = 1.4e-209, Sum P(4) = 1.4e-209
Identities = 49/92 (53%), Positives = 65/92 (70%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y+ + G + +G LD+LQ+ GRAGRPQY+T G +IT H +L +YLSLL Q+P
Sbjct: 829 KGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLP 888
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
IES V+ L D LNAEV LG + N +AV WL
Sbjct: 889 IESQMVSKLPDMLNAEVVLGNVQNAKDAVNWL 920
Score = 249 (92.7 bits), Expect = 1.2e-50, Sum P(4) = 1.2e-50
Identities = 83/308 (26%), Positives = 149/308 (48%)
Query: 258 DNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIE 317
D+ NAE+ TI N +AV +L++++L+ RM NP Y + + + L H + L+E
Sbjct: 1734 DHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL---QGISHRHLSDHLSELVE 1790
Query: 318 NAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMI 377
L+++ I D+A +LG A+ YYI + IELF+ + G++ +I
Sbjct: 1791 QTLSDLEQSKCISVEDEM-DVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEII 1849
Query: 378 SQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSL 437
S A E+E + +R E L L Q+ + H K N+LLQ LSR ++++ L
Sbjct: 1850 SNAAEYENIPIRHHEDSLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA-EL 1908
Query: 438 VSDLEYVNQNVIRIIRALFEITLHRNNAIMAA-RFLKFALMFETKQWPHETPLRQIKLVT 496
SD E + IR+I+A ++ L N + A ++ A M W ++ L+Q+
Sbjct: 1909 QSDTEEILSKAIRLIQACVDV-LSSNGWLSPALAAMELAQMATQAMWSKDSYLKQL---- 1963
Query: 497 NRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR--DPHVGDKVKQCAWEIPL 553
P + + + +G+ +V D+ EM +E + +L+ D + D + C P
Sbjct: 1964 ------PHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLSDSQIADVARFCN-RYPN 2016
Query: 554 LEIESKLL 561
+E+ +++
Sbjct: 2017 IELSYEVV 2024
Score = 173 (66.0 bits), Expect = 1.4e-209, Sum P(4) = 1.4e-209
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 28 EALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAH 87
+ L L + Q F+G K+LNRIQS +Y A T+ENLL+CAPTGAGKTNVA++ +
Sbjct: 460 QLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLR 519
Query: 88 QIKQHISQ-GT 97
+I +HI+ GT
Sbjct: 520 EIGKHINMDGT 530
Score = 143 (55.4 bits), Expect = 1.4e-41, Sum P(5) = 1.4e-41
Identities = 34/102 (33%), Positives = 48/102 (47%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T+ YN K YV I DVLQ+ G A RP + G I+ K + + L +P+E
Sbjct: 1666 TQYYNGKTHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVE 1725
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAV---RWLIIYINFVAN 255
S+ + D+ NAE+ TI N +AV W +Y N
Sbjct: 1726 SHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQN 1767
Score = 132 (51.5 bits), Expect = 3.0e-205, Sum P(4) = 3.0e-205
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 5 TELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
T+LV+L+I+DE+HLLH DRGPV+EALVAR +R I
Sbjct: 606 TQLVRLVILDEIHLLHDDRGPVLEALVARAIRNI 639
Score = 123 (48.4 bits), Expect = 2.7e-190, Sum P(4) = 2.7e-190
Identities = 36/123 (29%), Positives = 67/123 (54%)
Query: 49 LNRI-QSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCY 107
+ R+ ++LV D + +L+ T A N+ AH + I +GT++Y+ + G +
Sbjct: 789 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLP----AHTV---IIKGTQVYSPEKGRW 841
Query: 108 VHIGILDVLQIFGRAGRPQYNTSDLGRTASN-----YYIK--HNDIELFTEHMTKGTEMY 160
+G LD+LQ+ GRAGRPQY+T G ++ YY+ + + + ++ ++K +M
Sbjct: 842 TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML 901
Query: 161 NAK 163
NA+
Sbjct: 902 NAE 904
Score = 96 (38.9 bits), Expect = 7.6e-39, Sum P(5) = 7.6e-39
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 50 NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMY 100
N IQ+ V++T Y++++N+ + APTG+GKT A I + Q+ S+G +Y
Sbjct: 1329 NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQN-SEGRCVY 1378
Score = 88 (36.0 bits), Expect = 3.1e-29, Sum P(4) = 3.1e-29
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
+ L ++DEVHL+ G+ GPV+E + +R +R I ++ + ++ + SL
Sbjct: 1448 INLFVVDEVHLIGGENGPVLEVICSR-MRYISSQIERPIRIVALSSSL 1494
Score = 77 (32.2 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 34/124 (27%), Positives = 56/124 (45%)
Query: 16 VHLLHGDRGPVIEALVARTLRQIGQEVFKGV----KSLNRIQSLVYDTAYHTNE-NLLIC 70
+H D P +E L TL++ + GV + L+ ++ + + + + +++
Sbjct: 1590 LHCTEKDLIPYLEKLSDSTLKET---LLNGVGYLHEGLSPLERRLVEQLFSSGAIQVVVA 1646
Query: 71 APTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTS 130
+ + NVA AH + I T+ YN K YV I DVLQ+ G A RP +
Sbjct: 1647 SRSLCWGLNVA----AHLV---IIMDTQYYNGKTHAYVDYPIYDVLQMVGHANRPLQD-- 1697
Query: 131 DLGR 134
D GR
Sbjct: 1698 DEGR 1701
Score = 56 (24.8 bits), Expect = 6.0e-39, Sum P(5) = 6.0e-39
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE 151
+ ++LGR AS+YYI ++ ++ + +
Sbjct: 979 FQVTELGRIASHYYITNDTVQTYNQ 1003
Score = 54 (24.1 bits), Expect = 8.8e-09, Sum P(4) = 8.8e-09
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 131 DLGRTASNYYIKHNDIELFTEHMTKGTEM 159
+LG A+ YYI + IELF+ + T++
Sbjct: 1814 NLGMIAAYYYINYTTIELFSMSLNAKTKV 1842
Score = 47 (21.6 bits), Expect = 1.4e-209, Sum P(4) = 1.4e-209
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 929 PVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLK 981
PV++ V R+ +T + + + WV DA+ ++++ +IK L+
Sbjct: 2034 PVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLI-SIKRLTLQ 2085
Score = 40 (19.1 bits), Expect = 4.0e-33, Sum P(5) = 4.0e-33
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 33 RTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKT 78
R R++ +EV K ++ N +YD H LI P GKT
Sbjct: 1130 RQFRKLPEEVVKKIEKKNFPFERLYDLN-HNEIGELIRMPK-MGKT 1173
>UNIPROTKB|O75643 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
CleanEx:HS_SNRNP200 Genevestigator:O75643
GermOnline:ENSG00000144028 Uniprot:O75643
Length = 2136
Score = 1589 (564.4 bits), Expect = 3.8e-209, Sum P(4) = 3.8e-209
Identities = 313/740 (42%), Positives = 475/740 (64%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATD 305
L I V+ L D LNAE+ LG + N +AV WL Y+YL++RM +P YGIS+D++ D
Sbjct: 887 LPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGD 946
Query: 306 PDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMT 365
P L Q R L+ AA +LDK ++++++ +T + +T+LGR AS+YYI ++ ++ + + +
Sbjct: 947 PLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLK 1006
Query: 366 KVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQT 425
L ++ + + S + EF+ + VR+EE EL L + IP++ E K+N+LLQ
Sbjct: 1007 PTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERV-PIPVKESIEEPSAKINVLLQA 1065
Query: 426 LLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPH 485
+S+ ++ F+L++D+ YV Q+ R++RA+FEI L+R A + + L M + + W
Sbjct: 1066 FISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQS 1125
Query: 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVK 545
PLRQ + L +++ KIE++ E L ++ EI ++R P +G +
Sbjct: 1126 MCPLRQFRK----------LPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIH 1175
Query: 546 QCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIY 605
+ P LE+ L PITR+ LK+ LTI +F W++K + +E FWI VED DS+ I
Sbjct: 1176 KYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGS-SEAFWILVEDVDSEVIL 1234
Query: 606 HSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVP 665
H EYFLL K + E + +P+ +PLP QY IR +SDR+L Q +SF+HLI+P
Sbjct: 1235 HHEYFLLKAKYA--QDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILP 1292
Query: 666 ELHPPHTNLLELQPLPVSALQQPQYESLY--KFSHFNPIQTQIFHCLYHTDNNVLLGAPT 723
E +PP T LL+LQPLPVSAL+ +ESLY KF FNPIQTQ+F+ +Y++D+NV +GAPT
Sbjct: 1293 EKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPT 1352
Query: 724 GSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDV 783
GSGKTI AE R+ Q E + VYI P++AL ++ DW KF+ RL KKVV LTG+
Sbjct: 1353 GSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGET 1412
Query: 784 TPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVS 843
+ D++ + ++I++TPEKWD +SR W+ R VQ++ L ++DE+HL+G + GPVLEVI S
Sbjct: 1413 STDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICS 1472
Query: 844 RVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPG 903
R+ +ISS +R +R+V LS++L+NAKD+A WL + +NF P+VRPVPLE+HI GF
Sbjct: 1473 RMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNI 1532
Query: 904 KQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHT 963
R+ M KP+Y AI +HSP+KPV++FV SR+QTRLTAID++T A + + ++H
Sbjct: 1533 SHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHC 1592
Query: 964 SDAEMDNIVDNIKDSNLKLT 983
++ ++ ++ + DS LK T
Sbjct: 1593 TEKDLIPYLEKLSDSTLKET 1612
Score = 473 (171.6 bits), Expect = 9.3e-41, P = 9.3e-41
Identities = 119/306 (38%), Positives = 171/306 (55%)
Query: 650 GSVVQHSMSFKHLIVPELHP-PHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFH 708
GS + ++ + VP L P P + E Q LPV L + F N IQ++++
Sbjct: 433 GSFRRQRKGYEEVHVPALKPKPFGS--EEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYR 490
Query: 709 CLYHTDNNVLLGAPTGSGKTIAAEITCFR-VFKQC--------PEAKVVYIAPLKALVKE 759
TD N+LL APTG+GKT A + R + K + K++YIAP+++LV+E
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 760 RVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSV 819
V + + A V ELTGD + IS+ +IV TPEKWD ++R R Y Q V
Sbjct: 551 MVGSFGKRL-ATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLV 609
Query: 820 ALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK 879
LII+DEIHLL +DRGPVLE +V+R T+ +VRL+GLS L N +D+AT+L +
Sbjct: 610 RLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDP 669
Query: 880 -QGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRR 938
+G++ F S RPVPLE G K+ R MN+ +Y I +H+ + V++FV SR+
Sbjct: 670 AKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRK 729
Query: 939 QTRLTA 944
+T TA
Sbjct: 730 ETGKTA 735
Score = 264 (98.0 bits), Expect = 3.8e-209, Sum P(4) = 3.8e-209
Identities = 48/92 (52%), Positives = 65/92 (70%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y+ + G + +G LD+LQ+ GRAGRPQY+T G +IT H +L +YLSLL Q+P
Sbjct: 829 KGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLP 888
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
IES V+ L D LNAE+ LG + N +AV WL
Sbjct: 889 IESQMVSKLPDMLNAEIVLGNVQNAKDAVNWL 920
Score = 255 (94.8 bits), Expect = 2.8e-51, Sum P(4) = 2.8e-51
Identities = 85/312 (27%), Positives = 156/312 (50%)
Query: 258 DNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIE 317
D+ NAE+ TI N +AV +L++++L+ RM NP Y + + + L H + L+E
Sbjct: 1734 DHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL---QGISHRHLSDHLSELVE 1790
Query: 318 NAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMI 377
L+++ I D+A +LG A+ YYI + IELF+ + G++ +I
Sbjct: 1791 QTLSDLEQSKCISIEDEM-DVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEII 1849
Query: 378 SQAHEFEQLKVRDEELHELDNLTQECCE-IPIRGGS---ENVHGKVNILLQTLLSRGRVN 433
S A E+E + +R HE DNL ++ + +P + + + H K N+LLQ LSR +++
Sbjct: 1850 SNAAEYENIPIRH---HE-DNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS 1905
Query: 434 SFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAA-RFLKFALMFETKQWPHETPLRQI 492
+ L SD E + IR+I+A ++ L N + A ++ A M W ++ L+Q+
Sbjct: 1906 A-ELQSDTEEILSKAIRLIQACVDV-LSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQL 1963
Query: 493 KLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR--DPHVGDKVKQCAW 549
P + + + +G+ +V D+ EM +E + +L+ D + D + C
Sbjct: 1964 ----------PHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCN- 2012
Query: 550 EIPLLEIESKLL 561
P +E+ +++
Sbjct: 2013 RYPNIELSYEVV 2024
Score = 173 (66.0 bits), Expect = 3.8e-209, Sum P(4) = 3.8e-209
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 28 EALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAH 87
+ L L + Q F+G K+LNRIQS +Y A T+ENLL+CAPTGAGKTNVA++ +
Sbjct: 460 QLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLR 519
Query: 88 QIKQHISQ-GT 97
+I +HI+ GT
Sbjct: 520 EIGKHINMDGT 530
Score = 142 (55.0 bits), Expect = 2.5e-42, Sum P(5) = 2.5e-42
Identities = 34/102 (33%), Positives = 48/102 (47%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T+ YN K YV I DVLQ+ G A RP + G I+ K + + L +P+E
Sbjct: 1666 TQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVE 1725
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAV---RWLIIYINFVAN 255
S+ + D+ NAE+ TI N +AV W +Y N
Sbjct: 1726 SHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQN 1767
Score = 133 (51.9 bits), Expect = 6.2e-205, Sum P(4) = 6.2e-205
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 5 TELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
T+LV+L+I+DE+HLLH DRGPV+EALVAR +R I
Sbjct: 606 TQLVRLIILDEIHLLHDDRGPVLEALVARAIRNI 639
Score = 123 (48.4 bits), Expect = 4.3e-190, Sum P(4) = 4.3e-190
Identities = 36/123 (29%), Positives = 67/123 (54%)
Query: 49 LNRI-QSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCY 107
+ R+ ++LV D + +L+ T A N+ AH + I +GT++Y+ + G +
Sbjct: 789 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLP----AHTV---IIKGTQVYSPEKGRW 841
Query: 108 VHIGILDVLQIFGRAGRPQYNTSDLGRTASN-----YYIK--HNDIELFTEHMTKGTEMY 160
+G LD+LQ+ GRAGRPQY+T G ++ YY+ + + + ++ ++K +M
Sbjct: 842 TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML 901
Query: 161 NAK 163
NA+
Sbjct: 902 NAE 904
Score = 94 (38.1 bits), Expect = 2.2e-39, Sum P(5) = 2.2e-39
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 50 NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMY 100
N IQ+ V++T Y++++N+ + APTG+GKT A I + Q S+G +Y
Sbjct: 1329 NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-SEGRCVY 1378
Score = 88 (36.0 bits), Expect = 7.1e-30, Sum P(4) = 7.1e-30
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
+ L ++DEVHL+ G+ GPV+E + +R +R I ++ + ++ + SL
Sbjct: 1448 INLFVVDEVHLIGGENGPVLEVICSR-MRYISSQIERPIRIVALSSSL 1494
Score = 75 (31.5 bits), Expect = 6.5e-19, Sum P(3) = 6.5e-19
Identities = 34/124 (27%), Positives = 56/124 (45%)
Query: 16 VHLLHGDRGPVIEALVARTLRQIGQEVFKGV----KSLNRIQSLVYDTAYHTNE-NLLIC 70
+H D P +E L TL++ + GV + L+ ++ + + + + +++
Sbjct: 1590 LHCTEKDLIPYLEKLSDSTLKET---LLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVA 1646
Query: 71 APTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTS 130
+ + NVA AH + I T+ YN K YV I DVLQ+ G A RP +
Sbjct: 1647 SRSLCWGMNVA----AHLV---IIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD-- 1697
Query: 131 DLGR 134
D GR
Sbjct: 1698 DEGR 1701
Score = 56 (24.8 bits), Expect = 1.4e-39, Sum P(5) = 1.4e-39
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE 151
+ ++LGR AS+YYI ++ ++ + +
Sbjct: 979 FQVTELGRIASHYYITNDTVQTYNQ 1003
Score = 54 (24.1 bits), Expect = 8.7e-09, Sum P(4) = 8.7e-09
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 131 DLGRTASNYYIKHNDIELFTEHMTKGTEM 159
+LG A+ YYI + IELF+ + T++
Sbjct: 1814 NLGMIAAYYYINYTTIELFSMSLNAKTKV 1842
Score = 48 (22.0 bits), Expect = 3.8e-209, Sum P(4) = 3.8e-209
Identities = 16/79 (20%), Positives = 35/79 (44%)
Query: 905 QYCPRMAKMNKPIYTAIKQHSPEK--PVMIFVSSRRQTRLTAIDLITILACETNPKMWVH 962
++C R + Y + + S PV++ V R+ +T + + + WV
Sbjct: 2009 RFCNRYPNIELS-YEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVV 2067
Query: 963 TSDAEMDNIVDNIKDSNLK 981
DA+ ++++ +IK L+
Sbjct: 2068 IGDAKSNSLI-SIKRLTLQ 2085
Score = 40 (19.1 bits), Expect = 7.1e-34, Sum P(5) = 7.1e-34
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 33 RTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKT 78
R R++ +EV K ++ N +YD H LI P GKT
Sbjct: 1130 RQFRKLPEEVVKKIEKKNFPFERLYDLN-HNEIGELIRMPK-MGKT 1173
>UNIPROTKB|F1LNJ2 [details] [associations]
symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
Length = 2139
Score = 1588 (564.1 bits), Expect = 4.8e-209, Sum P(4) = 4.8e-209
Identities = 313/742 (42%), Positives = 476/742 (64%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATD 305
L I V+ L D LNAE+ LG + N +AV WL Y+YL++RM +P YGIS+D++ D
Sbjct: 887 LPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGD 946
Query: 306 PDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMT 365
P L Q R L+ AA +LDK ++++++ +T + +T+LGR AS+YYI ++ ++ + + +
Sbjct: 947 PLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLK 1006
Query: 366 KVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQT 425
L ++ + + S + EF+ + VR+EE EL L + IP++ E K+N+LLQ
Sbjct: 1007 PTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERV-PIPVKESIEEPSAKINVLLQA 1065
Query: 426 LLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPH 485
+S+ ++ F+L++D+ YV Q+ R++RA+FEI L+R A + + L M + + W
Sbjct: 1066 FISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQS 1125
Query: 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVK 545
PLRQ + L +++ KIE++ E L ++ EI ++R P +G +
Sbjct: 1126 MCPLRQFRK----------LPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIH 1175
Query: 546 QCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTY--AEPFWIWVEDPDSDF 603
+ P LE+ L PITR+ LK+ LTI +F W++K + + +E FWI VED DS+
Sbjct: 1176 KYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKARLVHGSSEAFWILVEDVDSEV 1235
Query: 604 IYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLI 663
I H EYFLL K + E + +P+ +PLP QY IR +SDR+L Q +SF+HLI
Sbjct: 1236 ILHHEYFLLKAKYA--QDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLI 1293
Query: 664 VPELHPPHTNLLELQPLPVSALQQPQYESLY--KFSHFNPIQTQIFHCLYHTDNNVLLGA 721
+PE +PP T LL+LQPLPVSAL+ +ESLY KF FNPIQTQ+F+ +Y++D+NV +GA
Sbjct: 1294 LPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGA 1353
Query: 722 PTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTG 781
PTGSGKTI AE R+ Q E + VYI P++AL ++ DW KF+ RL KKVV LTG
Sbjct: 1354 PTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTG 1413
Query: 782 DVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVI 841
+ + D++ + ++I++TPEKWD +SR W+ R VQ++ L ++DE+HL+G + GPVLEVI
Sbjct: 1414 ETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVI 1473
Query: 842 VSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGF 901
SR+ +ISS +R +R+V LS++L+NAKD+A WL + +NF P+VRPVPLE+HI GF
Sbjct: 1474 CSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGF 1533
Query: 902 PGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWV 961
R+ M KP+Y AI +HSP+KPV++FV SR+QTRLTAID++T A + + ++
Sbjct: 1534 NISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFL 1593
Query: 962 HTSDAEMDNIVDNIKDSNLKLT 983
H ++ ++ ++ + DS LK T
Sbjct: 1594 HCTEKDLIPYLEKLSDSTLKET 1615
Score = 472 (171.2 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 118/306 (38%), Positives = 171/306 (55%)
Query: 650 GSVVQHSMSFKHLIVPELHP-PHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFH 708
GS + ++ + VP L P P + E Q LPV L + F N IQ++++
Sbjct: 433 GSFRRQRKGYEEVHVPALKPKPFGS--EEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYR 490
Query: 709 CLYHTDNNVLLGAPTGSGKTIAAEITCFR-VFKQC--------PEAKVVYIAPLKALVKE 759
TD N+LL APTG+GKT A + R + K + K++YIAP+++LV+E
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 760 RVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSV 819
V + + A V ELTGD + IS+ +IV TPEKWD ++R R Y Q V
Sbjct: 551 MVGSFGKRL-ATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLV 609
Query: 820 ALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK 879
LI++DEIHLL +DRGPVLE +V+R T+ +VRL+GLS L N +D+AT+L +
Sbjct: 610 RLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDP 669
Query: 880 -QGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRR 938
+G++ F S RPVPLE G K+ R MN+ +Y I +H+ + V++FV SR+
Sbjct: 670 AKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRK 729
Query: 939 QTRLTA 944
+T TA
Sbjct: 730 ETGKTA 735
Score = 264 (98.0 bits), Expect = 4.8e-209, Sum P(4) = 4.8e-209
Identities = 48/92 (52%), Positives = 65/92 (70%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y+ + G + +G LD+LQ+ GRAGRPQY+T G +IT H +L +YLSLL Q+P
Sbjct: 829 KGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLP 888
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
IES V+ L D LNAE+ LG + N +AV WL
Sbjct: 889 IESQMVSKLPDMLNAEIVLGNVQNAKDAVNWL 920
Score = 255 (94.8 bits), Expect = 2.8e-51, Sum P(4) = 2.8e-51
Identities = 85/312 (27%), Positives = 156/312 (50%)
Query: 258 DNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIE 317
D+ NAE+ TI N +AV +L++++L+ RM NP Y + + + L H + L+E
Sbjct: 1737 DHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL---QGISHRHLSDHLSELVE 1793
Query: 318 NAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMI 377
L+++ I D+A +LG A+ YYI + IELF+ + G++ +I
Sbjct: 1794 QTLSDLEQSKCISIEDEM-DVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEII 1852
Query: 378 SQAHEFEQLKVRDEELHELDNLTQECCE-IPIRGGS---ENVHGKVNILLQTLLSRGRVN 433
S A E+E + +R HE DNL ++ + +P + + + H K N+LLQ LSR +++
Sbjct: 1853 SNAAEYENIPIRH---HE-DNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS 1908
Query: 434 SFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAA-RFLKFALMFETKQWPHETPLRQI 492
+ L SD E + IR+I+A ++ L N + A ++ A M W ++ L+Q+
Sbjct: 1909 A-ELQSDTEEILSKAIRLIQACVDV-LSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQL 1966
Query: 493 KLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR--DPHVGDKVKQCAW 549
P + + + +G+ +V D+ EM +E + +L+ D + D + C
Sbjct: 1967 ----------PHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCN- 2015
Query: 550 EIPLLEIESKLL 561
P +E+ +++
Sbjct: 2016 RYPNIELSYEVV 2027
Score = 173 (66.0 bits), Expect = 4.8e-209, Sum P(4) = 4.8e-209
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 28 EALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAH 87
+ L L + Q F+G K+LNRIQS +Y A T+ENLL+CAPTGAGKTNVA++ +
Sbjct: 460 QLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLR 519
Query: 88 QIKQHISQ-GT 97
+I +HI+ GT
Sbjct: 520 EIGKHINMDGT 530
Score = 142 (55.0 bits), Expect = 3.2e-42, Sum P(5) = 3.2e-42
Identities = 34/102 (33%), Positives = 48/102 (47%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T+ YN K YV I DVLQ+ G A RP + G I+ K + + L +P+E
Sbjct: 1669 TQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVE 1728
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAV---RWLIIYINFVAN 255
S+ + D+ NAE+ TI N +AV W +Y N
Sbjct: 1729 SHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQN 1770
Score = 132 (51.5 bits), Expect = 1.0e-204, Sum P(4) = 1.0e-204
Identities = 23/34 (67%), Positives = 31/34 (91%)
Query: 5 TELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
T+LV+L+++DE+HLLH DRGPV+EALVAR +R I
Sbjct: 606 TQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNI 639
Score = 123 (48.4 bits), Expect = 7.1e-190, Sum P(4) = 7.1e-190
Identities = 36/123 (29%), Positives = 67/123 (54%)
Query: 49 LNRI-QSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCY 107
+ R+ ++LV D + +L+ T A N+ AH + I +GT++Y+ + G +
Sbjct: 789 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLP----AHTV---IIKGTQVYSPEKGRW 841
Query: 108 VHIGILDVLQIFGRAGRPQYNTSDLGRTASN-----YYIK--HNDIELFTEHMTKGTEMY 160
+G LD+LQ+ GRAGRPQY+T G ++ YY+ + + + ++ ++K +M
Sbjct: 842 TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML 901
Query: 161 NAK 163
NA+
Sbjct: 902 NAE 904
Score = 96 (38.9 bits), Expect = 1.7e-39, Sum P(5) = 1.7e-39
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 50 NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMY 100
N IQ+ V++T Y++++N+ + APTG+GKT A I + Q+ S+G +Y
Sbjct: 1332 NPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQN-SEGRCVY 1381
Score = 88 (36.0 bits), Expect = 7.2e-30, Sum P(4) = 7.2e-30
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
+ L ++DEVHL+ G+ GPV+E + +R +R I ++ + ++ + SL
Sbjct: 1451 INLFVVDEVHLIGGENGPVLEVICSR-MRYISSQIERPIRIVALSSSL 1497
Score = 75 (31.5 bits), Expect = 6.6e-19, Sum P(3) = 6.6e-19
Identities = 34/124 (27%), Positives = 56/124 (45%)
Query: 16 VHLLHGDRGPVIEALVARTLRQIGQEVFKGV----KSLNRIQSLVYDTAYHTNE-NLLIC 70
+H D P +E L TL++ + GV + L+ ++ + + + + +++
Sbjct: 1593 LHCTEKDLIPYLEKLSDSTLKET---LLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVA 1649
Query: 71 APTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTS 130
+ + NVA AH + I T+ YN K YV I DVLQ+ G A RP +
Sbjct: 1650 SRSLCWGMNVA----AHLV---IIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD-- 1700
Query: 131 DLGR 134
D GR
Sbjct: 1701 DEGR 1704
Score = 56 (24.8 bits), Expect = 1.4e-39, Sum P(5) = 1.4e-39
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE 151
+ ++LGR AS+YYI ++ ++ + +
Sbjct: 979 FQVTELGRIASHYYITNDTVQTYNQ 1003
Score = 54 (24.1 bits), Expect = 7.1e-09, Sum P(4) = 7.1e-09
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 131 DLGRTASNYYIKHNDIELFTEHMTKGTEM 159
+LG A+ YYI + IELF+ + T++
Sbjct: 1817 NLGMIAAYYYINYTTIELFSMSLNAKTKV 1845
Score = 48 (22.0 bits), Expect = 4.8e-209, Sum P(4) = 4.8e-209
Identities = 16/79 (20%), Positives = 35/79 (44%)
Query: 905 QYCPRMAKMNKPIYTAIKQHSPEK--PVMIFVSSRRQTRLTAIDLITILACETNPKMWVH 962
++C R + Y + + S PV++ V R+ +T + + + WV
Sbjct: 2012 RFCNRYPNIELS-YEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVV 2070
Query: 963 TSDAEMDNIVDNIKDSNLK 981
DA+ ++++ +IK L+
Sbjct: 2071 IGDAKSNSLI-SIKRLTLQ 2088
Score = 40 (19.1 bits), Expect = 9.1e-34, Sum P(5) = 9.1e-34
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 33 RTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKT 78
R R++ +EV K ++ N +YD H LI P GKT
Sbjct: 1130 RQFRKLPEEVVKKIEKKNFPFERLYDLN-HNEIGELIRMPK-MGKT 1173
>TAIR|locus:2037375 [details] [associations]
symbol:emb1507 "embryo defective 1507" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 EMBL:CP002684 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 GO:GO:0016020 GO:GO:0003676
GO:GO:0030529 EMBL:AC007369 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 KO:K12854 OMA:KWDVLSR
GO:GO:0008026 ProtClustDB:CLSN2679454 IPI:IPI00536616 PIR:E86342
RefSeq:NP_001185050.1 RefSeq:NP_173520.1 UniGene:At.11196
UniGene:At.21273 ProteinModelPortal:Q9SYP1 SMR:Q9SYP1 IntAct:Q9SYP1
STRING:Q9SYP1 PRIDE:Q9SYP1 ProMEX:Q9SYP1 EnsemblPlants:AT1G20960.1
EnsemblPlants:AT1G20960.2 GeneID:838690 KEGG:ath:AT1G20960
TAIR:At1g20960 InParanoid:Q9SYP1 PhylomeDB:Q9SYP1
Genevestigator:Q9SYP1 Uniprot:Q9SYP1
Length = 2171
Score = 1591 (565.1 bits), Expect = 1.8e-208, Sum P(3) = 1.8e-208
Identities = 326/744 (43%), Positives = 473/744 (63%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATD 305
L I F++ LAD LNAE+ LGT+ N EA WL Y+YL++RM NP YG++ D +A D
Sbjct: 911 LPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLYGLAPDALAKD 970
Query: 306 PDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMT 365
L + R LI +AA ILDK ++++++ ++ +TDLGR AS YYI H I + EH+
Sbjct: 971 VVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLK 1030
Query: 366 KVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQT 425
+ D+ + + S + EF+ + VR +E EL L IPI+ E K+N+LLQ
Sbjct: 1031 PTMGDIDLYRLFSLSDEFKYVTVRQDEKMELAKLLDRV-PIPIKETLEEPSAKINVLLQA 1089
Query: 426 LLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPH 485
+S+ ++ SL SD+ Y+ Q+ R++RAL+EI L R A +A + L + M + W
Sbjct: 1090 YISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKALNLSKMVGKRMWSV 1149
Query: 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVK 545
+TPLRQ ++N DIL ++E++ L E ++ A+E+ ++R P +G +
Sbjct: 1150 QTPLRQFHGLSN----------DILMQLEKKDLVWERYYDLSAQELGELIRSPKMGKPLH 1199
Query: 546 QCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIY 605
+ + P + + + + PITRTVL + LT+ +F W++K Y EPFWI VED D + I
Sbjct: 1200 KFIHQFPKVTLSAHVQPITRTVLNVELTVTPDFLWDEKIHK-YVEPFWIIVEDNDGEKIL 1258
Query: 606 HSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVP 665
H EYFLL KKQ I + + +L T+P+ +PLP QY +R +SD++LGS +SF+HLI+P
Sbjct: 1259 HHEYFLL-KKQYIDE-DHTLHFTVPIFEPLPPQYFVRVVSDKWLGSETVLPVSFRHLILP 1316
Query: 666 ELHPPHTNLLELQPLPVSALQQPQYESLYK-FSHFNPIQTQIFHCLYHTDNNVLLGAPTG 724
E +PP T LL+LQPLPV+AL+ P YE LY+ F HFNP+QTQ+F LY+T++NVL+ APTG
Sbjct: 1317 EKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTG 1376
Query: 725 SGKTIAAEITCFRVFKQCPEA--KVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGD 782
SGKTI AE R + P+A +VVYIAPL+A+ KE+ W+ KF L +VVELTG+
Sbjct: 1377 SGKTICAEFAILRNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGE 1436
Query: 783 VTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIV 842
D++ + +I++TPEKWD +SR W+ R YVQ V+L I+DE+HL+G GPVLEVIV
Sbjct: 1437 TALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVIV 1496
Query: 843 SRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFP 902
SR+ +ISS +R+V LST+LANAKDL W+ + G++NF P VRPVPLE+HI G
Sbjct: 1497 SRMRYISSQVINKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVD 1556
Query: 903 GKQYCPRMAKMNKPIYTAIKQHSP-EKPVMIFVSSRRQTRLTAIDLITILACETNPKM-- 959
+ RM M KP YTAI QH+ +KP ++FV +R+ RLTA+DL+ + NP+
Sbjct: 1557 ISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMD-NPQSPD 1615
Query: 960 WVHTSDAEMDNIVDNIKDSNLKLT 983
++ E+D V+ I++ LK T
Sbjct: 1616 FLLGKLEELDPFVEQIREETLKET 1639
Score = 425 (154.7 bits), Expect = 3.9e-34, Sum P(2) = 3.9e-34
Identities = 123/351 (35%), Positives = 184/351 (52%)
Query: 650 GSVVQHSMSFKHLIVPELHPP---HTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQI 706
GS H + + VP + + L+++ +P A QP ++ + + N +Q+++
Sbjct: 458 GSYRSHGKGYDEVHVPWVSKKVDRNEKLVKITEMPDWA--QPAFKGMQQL---NRVQSKV 512
Query: 707 FHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEA---------KVVYIAPLKALV 757
+ N+LL APTG+GKT A +T + + K+VY+AP+KALV
Sbjct: 513 YDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALV 572
Query: 758 KERVADWKVKFEARLKKKVV---ELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRN 814
E V + RLK V EL+GD + + I +IVTTPEKWD ++R +R
Sbjct: 573 AEVVGN----LSNRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDIITRKSGDRT 628
Query: 815 YVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATW 874
Y Q V L+IIDEIHLL ++RGPVLE IV+R TK N+RLVGLS L N +D+A +
Sbjct: 629 YTQLVRLLIIDEIHLLHDNRGPVLESIVARTLRQIETTKENIRLVGLSATLPNYEDVALF 688
Query: 875 LNIT-KQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIF 933
L + K+G++ F S RPVPL G K+ R MN Y + + + V+IF
Sbjct: 689 LRVDLKKGLFKFDRSYRPVPLHQQYIGISVKKPLQRFQLMNDLCYQKVLAGAGKHQVLIF 748
Query: 934 VSSRRQTRLTAIDLI-TILACETNPKMWVHTSDAE--MDNIVDNIKDSNLK 981
V SR++T TA + T +A +T + S + + D +K+S+LK
Sbjct: 749 VHSRKETSKTARAIRDTAMANDTLSRFLKEDSVTRDVLHSHEDIVKNSDLK 799
Score = 274 (101.5 bits), Expect = 1.8e-208, Sum P(3) = 1.8e-208
Identities = 52/104 (50%), Positives = 71/104 (68%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++YN + G ++ + LDV+Q+ GRAGRPQY+ G IIT + +L +YLSL+ Q+P
Sbjct: 853 KGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSELQYYLSLMNEQLP 912
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
IES F++ LAD LNAE+ LGT+ N EA WL +YI V N
Sbjct: 913 IESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRN 956
Score = 226 (84.6 bits), Expect = 2.5e-51, Sum P(3) = 2.5e-51
Identities = 101/420 (24%), Positives = 182/420 (43%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L DN NAEV G I N +AV +L++++++ R+ NP Y + + + L H + L
Sbjct: 1759 LHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNL---QGVSHRHLSDHLSEL 1815
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
+EN L+ + I +L+ +LG AS YYI + IE F+ ++ G+L
Sbjct: 1816 VENTLSDLEASKCIEVEDEM-ELSPLNLGMIASYYYISYTTIERFSSLLSSKTKMKGLLE 1874
Query: 376 MISQAHEFEQLKVR---DEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRV 432
+++ A E++ + +R ++ + L N + E P + H K N LLQ SR +
Sbjct: 1875 ILTSASEYDMIPIRPGEEDTVRRLINHQRFSFENP---KCTDPHVKANALLQAHFSRQNI 1931
Query: 433 NSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQI 492
+L D V + R+++A+ ++ +A ++ + M W ++ L Q+
Sbjct: 1932 GG-NLAMDQRDVLLSATRLLQAMVDVISSNGWLNLALLAMEVSQMVTQGMWERDSMLLQL 1990
Query: 493 KLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLR--DPHVGDKVKQCAWE 550
T + P IE TV DL EM +E +L+ D + D + C
Sbjct: 1991 PHFTKDLAKRCQENPG--KNIE----TVFDLVEMEDEERQELLKMSDAQLLDIARFCN-R 2043
Query: 551 IPLLEIESKLL------PITRTVLKIHLTI----KANFSWNDKNK--STYAEPFWIWVED 598
P +++ +++ P L++ L + D + T E +W+ V D
Sbjct: 2044 FPNIDLTYEIVGSEEVNPGKEVTLQVMLERDMEGRTEVGPVDSLRYPKTKEEGWWLVVGD 2103
Query: 599 PDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMS 658
++ + + + + K + L T P S+P Y + M D YLG ++S S
Sbjct: 2104 TKTN-----QLLAIKRVSLQRKVKVKLDFTAP-SEPGEKSYTLYFMCDSYLGCDQEYSFS 2157
Score = 190 (71.9 bits), Expect = 1.8e-208, Sum P(3) = 1.8e-208
Identities = 49/97 (50%), Positives = 61/97 (62%)
Query: 14 DEVHLLH-GDRGPVIEALVART-LRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICA 71
DEVH+ + E LV T + Q FKG++ LNR+QS VYDTA EN+L+CA
Sbjct: 468 DEVHVPWVSKKVDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCA 527
Query: 72 PTGAGKTNVAMLTIAHQIKQHIS-QGTEMYNAKHGCY 107
PTGAGKTNVAMLTI Q++ + + GT YN HG Y
Sbjct: 528 PTGAGKTNVAMLTILQQLEMNRNTDGT--YN--HGDY 560
Score = 142 (55.0 bits), Expect = 6.8e-40, Sum P(4) = 6.8e-40
Identities = 33/99 (33%), Positives = 48/99 (48%)
Query: 150 TEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207
T H+ GT+ Y+ + + + D+LQ+ GRA RP + +G I + +Y
Sbjct: 1684 TAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRKEYYKK 1743
Query: 208 LLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
L P+ES L DN NAEV G I N +AV +L
Sbjct: 1744 FLYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYL 1782
Score = 141 (54.7 bits), Expect = 2.7e-203, Sum P(3) = 2.7e-203
Identities = 27/38 (71%), Positives = 34/38 (89%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
D T+LV+LLIIDE+HLLH +RGPV+E++VARTLRQI
Sbjct: 626 DRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTLRQI 663
Score = 110 (43.8 bits), Expect = 5.4e-186, Sum P(3) = 5.4e-186
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 86 AHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGRTASNYYIKHND 145
AH + I +GT++YN + G ++ + LDV+Q+ GRAGRPQY+ G + Y
Sbjct: 847 AHTV---IIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSELQYY 903
Query: 146 IELFTEHM 153
+ L E +
Sbjct: 904 LSLMNEQL 911
Score = 106 (42.4 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 27 IEALVARTLRQIGQEV-FKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
++ L LR E+ ++ K N +Q+ V+ Y+TN+N+L+ APTG+GKT A I
Sbjct: 1328 LQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAI 1387
Score = 91 (37.1 bits), Expect = 3.9e-27, Sum P(3) = 3.9e-27
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVK 47
V L I+DE+HL+ G GPV+E +V+R +R I +V ++
Sbjct: 1473 VSLFIVDELHLIGGQHGPVLEVIVSR-MRYISSQVINKIR 1511
Score = 74 (31.1 bits), Expect = 6.8e-40, Sum P(4) = 6.8e-40
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTEHM 153
+ +DLGR AS YYI H I + EH+
Sbjct: 1003 FQVTDLGRIASYYYITHGTIATYNEHL 1029
Score = 65 (27.9 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 28/106 (26%), Positives = 50/106 (47%)
Query: 25 PVIEALVARTLRQ-----IGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTN 79
P +E + TL++ IG + +G+ SL+ Q +V T + +C + +
Sbjct: 1626 PFVEQIREETLKETLCHGIGY-LHEGLSSLD--QEIV--TQLFEAGRIQVCVMSSSLCWG 1680
Query: 80 VAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRP 125
LT AH + + GT+ Y+ + + + D+LQ+ GRA RP
Sbjct: 1681 TP-LT-AHLV---VVMGTQYYDGRENSHSDYPVPDLLQMMGRASRP 1721
Score = 57 (25.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 131 DLGRTASNYYIKHNDIELFTEHMTKGTEM 159
+LG AS YYI + IE F+ ++ T+M
Sbjct: 1841 NLGMIASYYYISYTTIERFSSLLSSKTKM 1869
Score = 43 (20.2 bits), Expect = 3.9e-34, Sum P(2) = 3.9e-34
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 369 DDVGILSMISQAHEFEQLKVRDEELHE--LDNLTQECCEIPIRGGSENVHGKVN 420
DD G+ + A EFE+ + DEE ++ E + P R G V +N
Sbjct: 203 DDEGLDDDLGVAVEFEENEEDDEESDPDMVEEDDDEEDDEPTRTGGMQVDAGIN 256
Score = 39 (18.8 bits), Expect = 9.1e-22, Sum P(3) = 9.1e-22
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 7 LVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRI--QSLVYDTAYHTN 64
L+K IDE H LH P+ E L + ++ + + G +++ + + L+ Y
Sbjct: 1264 LLKKQYIDEDHTLHFTV-PIFEPLPPQYFVRVVSDKWLGSETVLPVSFRHLILPEKYPPP 1322
Query: 65 ENLLICAP 72
LL P
Sbjct: 1323 TELLDLQP 1330
>SGD|S000003503 [details] [associations]
symbol:SLH1 "Putative RNA helicase related to Ski2p"
species:4932 "Saccharomyces cerevisiae" [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA;IGI;IMP] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042788 "polysomal ribosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0002181
"cytoplasmic translation" evidence=IGI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 SGD:S000003503 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 EMBL:BK006941 GO:GO:0003676 GO:GO:0051607
GO:GO:0002181 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003724 KO:K02201
RefSeq:NP_011793.3 GeneID:853194 KEGG:sce:YGR277C OMA:RKPTGEG
OrthoDB:EOG4H75KM RefSeq:NP_011787.4 GeneID:853187 KEGG:sce:YGR271W
EMBL:U35242 EMBL:Z73056 PIR:S64604 DIP:DIP-5563N IntAct:P53327
MINT:MINT-516762 STRING:P53327 PaxDb:P53327 PeptideAtlas:P53327
EnsemblFungi:YGR271W CYGD:YGR271w NextBio:973332
Genevestigator:P53327 GermOnline:YGR271W Uniprot:P53327
Length = 1967
Score = 1609 (571.5 bits), Expect = 1.6e-207, Sum P(3) = 1.6e-207
Identities = 322/734 (43%), Positives = 468/734 (63%)
Query: 252 FVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQH 311
F + L DNLNAE++LG++ N+DEA+ WL Y+Y+ VRMR NP YGI ++E+A DP L +
Sbjct: 707 FGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVRMRKNPFTYGIDWEEIANDPQLYER 766
Query: 312 RTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDV 371
R +I AA+ L MI F+ + DLGR +S++Y+ + +E+F + +
Sbjct: 767 RRKMIVVAARRLHALQMIVFDEVSMHFIAKDLGRVSSDFYLLNESVEIFNQMCDPRATEA 826
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
+LSMIS + EF+ +K R+EE EL L+ E E I + GK N+LLQ +S+ R
Sbjct: 827 DVLSMISMSSEFDGIKFREEESKELKRLSDESVECQIGSQLDTPQGKANVLLQAYISQTR 886
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
+ +L SD YV QN +RI RALF I ++R + L E + W + PL Q
Sbjct: 887 IFDSALSSDSNYVAQNSVRICRALFLIGVNRRWGKFSNVMLNICKSIEKRLWAFDHPLCQ 946
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI 551
L N I+ +I ++E L E+ A E+ ++ + G ++ +
Sbjct: 947 FDLPEN-----------IIRRIRDTKPSMEHLLELEADELGELVHNKKAGSRLYKILSRF 995
Query: 552 PLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFL 611
P + IE+++ PIT V++IH+ + +F W+ + A+ FW++VE+ D I H E F+
Sbjct: 996 PKINIEAEIFPITTNVMRIHIALGPDFVWDSRIHGD-AQFFWVFVEESDKSQILHFEKFI 1054
Query: 612 LSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPH 671
L+++Q+ + E + IPLSDPLP Q +++ +SD ++G H++SF+HLI P
Sbjct: 1055 LNRRQLNNQHEMDFM--IPLSDPLPPQVVVKVVSDTWIGCESTHAISFQHLIRPFNETLQ 1112
Query: 672 TNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAA 731
T LL+L+PLP SALQ P ES+Y F +FNP+QT F+ LY+T+ N +G+PTGSGKTI A
Sbjct: 1113 TKLLKLRPLPTSALQNPLIESIYPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVA 1172
Query: 732 EITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791
E+ + FK P K+VYIAP+KALV+ERV DW+ K KVVELTGD PD + +
Sbjct: 1173 ELAIWHAFKTFPGKKIVYIAPMKALVRERVDDWRKKITPVTGDKVVELTGDSLPDPKDVH 1232
Query: 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSY 851
A++++TTPEK+DG+SR+WQ R +VQ V+LII+DEIHLL DRGP+LE+IVSR+N+ISS
Sbjct: 1233 DATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIHLLASDRGPILEMIVSRMNYISSQ 1292
Query: 852 TKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGK-QYCPRM 910
TK+ VRL+G+STA++NA D+A WL + G+YNF SVRPVPL+++I GFP +CP M
Sbjct: 1293 TKQPVRLLGMSTAVSNAYDMAGWLGVKDHGLYNFPSSVRPVPLKMYIDGFPDNLAFCPLM 1352
Query: 911 AKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAE-MD 969
MNKP++ AIKQHSP+KP +IFV+SRRQTRLTA+DLI + E NP+ +++ D E +
Sbjct: 1353 KTMNKPVFMAIKQHSPDKPALIFVASRRQTRLTALDLIHLCGMEDNPRRFLNIDDEEELQ 1412
Query: 970 NIVDNIKDSNLKLT 983
+ + D LKL+
Sbjct: 1413 YYLSQVTDDTLKLS 1426
Score = 402 (146.6 bits), Expect = 3.7e-33, P = 3.7e-33
Identities = 121/346 (34%), Positives = 182/346 (52%)
Query: 660 KHLIVPEL-HPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVL 718
+ +I+P + N L + L +S L ++++ + N IQ+ ++ Y T+ N+L
Sbjct: 249 EEIIIPAADQASNKNYLYTKLLKISDLDH-FCKTVFPYETLNQIQSLVYPVAYKTNENML 307
Query: 719 LGAPTGSGKTIAAEITCFRVFKQCP-------------EAKVVYIAPLKALVKERVADWK 765
+ APTG+GKT A +T KQ + KV+Y+APLKAL E V +
Sbjct: 308 ICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAAEIVDKFS 367
Query: 766 VKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRN-YVQSVALIII 824
K A +V ELTGD+ I + VIVTTPEKWD V+R N V V L+II
Sbjct: 368 KKL-APFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDLVSKVKLLII 426
Query: 825 DEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ-GMY 883
DE+HLL EDRG V+E +V+R ++ +R++GLS L N D+A +L + +Q GM+
Sbjct: 427 DEVHLLHEDRGSVIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADFLGVNRQIGMF 486
Query: 884 NFRPSVRPVPLEVHISGFPGKQYCPRMAKMN--KPIYTAIKQHSPEK-PVMIFVSSRRQT 940
F S RP PLE + G GK R +K N K Y + + VM+FV SR++T
Sbjct: 487 YFDQSFRPKPLEQQLLGCRGKAGS-RQSKENIDKVAYDKLSEMIQRGYQVMVFVHSRKET 545
Query: 941 RLTAIDLITILACETNPKMWVHTSDA-EMD----NIVDNIKDSNLK 981
+A + I + E+N ++ + D E D ++V N +D ++K
Sbjct: 546 VKSARNFIKL--AESNHEVDLFAPDPIEKDKYSRSLVKN-RDKDMK 588
Score = 268 (99.4 bits), Expect = 1.6e-207, Sum P(3) = 1.6e-207
Identities = 47/93 (50%), Positives = 72/93 (77%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTS-GHATIITPHEKLNHYLSLLTNQI 213
KGT++Y++K G ++ +GI DV+QIFGR GRP + ++ G + T +++L+HY+SL+T Q
Sbjct: 642 KGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQH 701
Query: 214 PIESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
PIES F + L DNLNAE++LG++ N+DEA+ WL
Sbjct: 702 PIESRFGSKLVDNLNAEISLGSVTNVDEAIEWL 734
Score = 169 (64.5 bits), Expect = 1.6e-207, Sum P(3) = 1.6e-207
Identities = 32/45 (71%), Positives = 40/45 (88%)
Query: 47 KSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQ 91
++LN+IQSLVY AY TNEN+LICAPTGAGKT++A+LTI + IKQ
Sbjct: 286 ETLNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQ 330
Score = 169 (64.5 bits), Expect = 5.6e-38, Sum P(4) = 5.6e-38
Identities = 37/92 (40%), Positives = 54/92 (58%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT+ ++AK Y + + D+LQ+ GRAGRP Y+T+G A + T K Y L P
Sbjct: 1478 KGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFP 1537
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
+ES+ L D+L AE+ G+I N EA+ +L
Sbjct: 1538 VESSLHKVLDDHLGAEITSGSITNKQEALDFL 1569
Score = 167 (63.8 bits), Expect = 1.7e-42, Sum P(3) = 1.7e-42
Identities = 60/241 (24%), Positives = 106/241 (43%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L D+L AE+ G+I N EA+ +LS+++L R NP YGI D+ +T + +H ++L
Sbjct: 1546 LDDHLGAEITSGSITNKQEALDFLSWTFLFRRAHHNPTYYGIE-DDTST-AGVSEHLSSL 1603
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
I++ + L ++ + + D+ T +S YYI H I + + +L
Sbjct: 1604 IDSTLENLRESQCVL--LHGDDIVATPFLSISSYYYISHLTIRQLLKQIHDHATFQEVLR 1661
Query: 376 MISQAHEFEQLKVRDEEL---HELDNLTQECCEIPIRGGSE----NVHGKVNILLQTLLS 428
+S A E+ +L VR E+ E+ ++ E E + H K +LLQ LS
Sbjct: 1662 WLSLAVEYNELPVRGGEIIMNEEMSQQSRYSVESTFTDEFELPMWDPHVKTFLLLQAHLS 1721
Query: 429 RGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETP 488
R + + D V +RI++A ++ +K + W + P
Sbjct: 1722 RVDLPIADYIQDTVSVLDQSLRILQAYIDVASELGYFHTVLTMIKMMQCIKQGYWYEDDP 1781
Query: 489 L 489
+
Sbjct: 1782 V 1782
Score = 133 (51.9 bits), Expect = 1.0e-203, Sum P(3) = 1.0e-203
Identities = 29/38 (76%), Positives = 30/38 (78%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
D L VKLLIIDEVHLLH DRG VIE LVARTLRQ+
Sbjct: 414 DNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQV 451
Score = 109 (43.4 bits), Expect = 9.6e-191, Sum P(3) = 9.6e-191
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSD-LG-RTASNYYIKHNDIELFT 150
I +GT++Y++K G ++ +GI DV+QIFGR GRP + +++ G SN + H + L T
Sbjct: 640 IIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHY-VSLIT 698
Query: 151 E 151
+
Sbjct: 699 Q 699
Score = 105 (42.0 bits), Expect = 7.3e-34, Sum P(4) = 7.3e-34
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 47 KSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIK 90
K N +Q++ + T Y+TNEN + +PTG+GKT VA L I H K
Sbjct: 1138 KYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFK 1181
Score = 93 (37.8 bits), Expect = 5.4e-24, Sum P(3) = 5.4e-24
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL--VYDTA 60
V L+I+DE+HLL DRGP++E +V+R + I + + V+ L ++ YD A
Sbjct: 1260 VSLIIMDEIHLLASDRGPILEMIVSR-MNYISSQTKQPVRLLGMSTAVSNAYDMA 1313
Score = 93 (37.8 bits), Expect = 2.8e-20, Sum P(3) = 2.8e-20
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+LI T A N+ AH + I +GT+ ++AK Y + + D+LQ+ GRAGRP
Sbjct: 1457 ILIATSTLAWGVNLP----AHLV---IIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPA 1509
Query: 127 YNTSDLGRTASNYYIKHNDIELFTEH-MTKGTEMYNAKH 164
Y+T+ TA Y K + ++F +H + G + ++ H
Sbjct: 1510 YDTTG---TAI-VYTKESK-KMFYKHFLNVGFPVESSLH 1543
Score = 56 (24.8 bits), Expect = 1.6e-32, Sum P(4) = 1.6e-32
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 131 DLGRTASNYYIKHNDIELFTE 151
DLGR +S++Y+ + +E+F +
Sbjct: 797 DLGRVSSDFYLLNESVEIFNQ 817
Score = 39 (18.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 620 KSEESLIMTIPLSDPLPN 637
+S +S+I I LS LPN
Sbjct: 452 ESSQSMIRIIGLSATLPN 469
>TAIR|locus:2059969 [details] [associations]
symbol:AT2G42270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 EMBL:AC002561 GO:GO:0030529
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 UniGene:At.12448 UniGene:At.43726 KO:K12854
OMA:RDTHESS GO:GO:0008026 IPI:IPI00539463 PIR:T00936
RefSeq:NP_181756.1 ProteinModelPortal:O48534 SMR:O48534
STRING:O48534 PaxDb:O48534 PRIDE:O48534 EnsemblPlants:AT2G42270.1
GeneID:818828 KEGG:ath:AT2G42270 TAIR:At2g42270 InParanoid:O48534
PhylomeDB:O48534 ProtClustDB:CLSN2679454 ArrayExpress:O48534
Genevestigator:O48534 Uniprot:O48534
Length = 2172
Score = 1547 (549.6 bits), Expect = 2.6e-201, Sum P(3) = 2.6e-201
Identities = 314/708 (44%), Positives = 460/708 (64%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATD 305
L I F++ LAD LNAE+ LGTI N EA WL Y+YL+VRM NP YG+S D +A D
Sbjct: 912 LPIESQFISKLADQLNAEIVLGTIQNAREACHWLGYTYLYVRMVRNPTLYGVSPDALAKD 971
Query: 306 PDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMT 365
L + R LI +AA ILDK ++I+++ ++ +TDLGR AS YYI H I + E++
Sbjct: 972 LLLEERRADLIHSAATILDKNNLIKYDRKSGHFQVTDLGRIASYYYISHGTIAAYNENLK 1031
Query: 366 KVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQT 425
++D+ + + S + EF+ + VR +E EL L IP++ E+ K+N+LLQ
Sbjct: 1032 PTMNDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRV-PIPVKETLEDPSAKINVLLQV 1090
Query: 426 LLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPH 485
+S+ ++ SL SD+ Y+ Q+ R++RA+FEI L R A ++ + L + M + W
Sbjct: 1091 YISKLKLEGLSLTSDMVYITQSAGRLLRAIFEIVLKRGWAQLSQKALNLSKMVGKRMWSV 1150
Query: 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVK 545
+TPL +Q P + +IL K+E+ L E ++ ++E+ ++ +P +G +
Sbjct: 1151 QTPL----------WQFPGIPKEILMKLEKNDLVWERYYDLSSQELGELICNPKMGRPLH 1200
Query: 546 QCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDK-NKSTYAEPFWIWVEDPDSDFI 604
+ + P L++ + + PI+R+VL++ LT+ +F W+DK NK Y EPFWI VED D + I
Sbjct: 1201 KYIHQFPKLKLAAHVQPISRSVLQVELTVTPDFHWDDKANK--YVEPFWIIVEDNDGEKI 1258
Query: 605 YHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIV 664
H EYFL KK+VI + + +L T+P+S+P+P QY IR +SD++L S +SF+HLI+
Sbjct: 1259 LHHEYFLF-KKRVIDE-DHTLNFTVPISEPIPPQYFIRVVSDKWLDSPTVLPVSFRHLIL 1316
Query: 665 PELHPPHTNLLELQPLPVSALQQPQYESLYK-FSHFNPIQTQIFHCLYHTDNNVLLGAPT 723
PE +PP T LL+LQPLPV AL+ P YE+LY+ F HFNP+QTQ+F LY+T +NV++ APT
Sbjct: 1317 PEKYPPPTELLDLQPLPVMALRNPSYETLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAPT 1376
Query: 724 GSGKTIAAEITCFRVFKQCPEA--KVVYIAPLKALVKERVADWKVKFEARLKKKVVELTG 781
GSGKTI AE R + P++ +VVYIAPL+A+ KE+ DW+ KF L +VVELTG
Sbjct: 1377 GSGKTICAEFAILRNHLEGPDSAMRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVELTG 1436
Query: 782 DVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVI 841
+ D++ + +I++TPEKWD +SR W+ R Y+Q V+L I+DE+HL+G G VLEVI
Sbjct: 1437 ETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGQVLEVI 1496
Query: 842 VSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGF 901
VSR+ +ISS +R+V LST+LANAKDL W+ + G++NF P+VRPVPLE+HI G
Sbjct: 1497 VSRMRYISSQVGNKIRIVALSTSLANAKDLGEWIGASSCGVFNFPPNVRPVPLEIHIHGV 1556
Query: 902 PGKQYCPRMAKMNKPIYTAIKQHSP-EKPVMIFVSSRRQTRLTAIDLI 948
+ RM M KP YTAI QH+ +KP ++FV +R+ RLTA+DLI
Sbjct: 1557 DILSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLI 1604
Score = 414 (150.8 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 121/325 (37%), Positives = 176/325 (54%)
Query: 674 LLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEI 733
L+++ LP A QP + + + N +Q++++ +N+LL APTG+GKT A +
Sbjct: 486 LVKISDLPEWA--QPAFRGMQQL---NRVQSKVYGTALFKADNILLCAPTGAGKTNVAVL 540
Query: 734 TCFRVF--KQCPEA-------KVVYIAPLKALVKERVADWKVKFEARLKK---KVVELTG 781
T P K+VY+AP+KALV E V D RLK V EL+G
Sbjct: 541 TILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAE-VVD---SLSQRLKDFGVTVKELSG 596
Query: 782 DVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVI 841
D + Q I +IVTTPEKWD ++R +R Y Q V L+IIDEIHLL ++RGPVLE I
Sbjct: 597 DQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLDDNRGPVLESI 656
Query: 842 VSR-VNFISSYTKRNVRLVGLSTALANAKDLATWLNIT-KQGMYNFRPSVRPVPLEVHIS 899
V+R + I S TK ++RLVGLS L N D+A++L + K G++ F S RPVPL
Sbjct: 657 VARTLRQIES-TKEHIRLVGLSATLPNCDDVASFLRVDLKNGLFIFDRSYRPVPLGQQYI 715
Query: 900 GFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLI-TILACETNPK 958
G K+ R MN Y + + + V+IFV SR++T TA + T +A +T +
Sbjct: 716 GINVKKPLRRFQLMNDICYQKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAMANDTLSR 775
Query: 959 MWVHTSDAE--MDNIVDNIKDSNLK 981
S + + + +K+++LK
Sbjct: 776 FLKEDSQSREILKCLAGLLKNNDLK 800
Score = 271 (100.5 bits), Expect = 2.6e-201, Sum P(3) = 2.6e-201
Identities = 52/104 (50%), Positives = 70/104 (67%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++YN + G ++ + LDV+Q+ GRAGRPQY+ G IIT + KL +YL L+ Q+P
Sbjct: 854 KGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIITGYSKLQYYLRLMNEQLP 913
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
IES F++ LAD LNAE+ LGTI N EA WL +Y+ V N
Sbjct: 914 IESQFISKLADQLNAEIVLGTIQNAREACHWLGYTYLYVRMVRN 957
Score = 197 (74.4 bits), Expect = 7.9e-47, Sum P(3) = 7.9e-47
Identities = 98/421 (23%), Positives = 189/421 (44%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L DN NAEV I N +AV +L++S+++ R+ NP Y + + L H + L
Sbjct: 1760 LHDNFNAEVVARVIENKQDAVDYLTWSFMYRRLPQNPNYYNLLG---VSHRHLSDHLSEL 1816
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
+EN L+ + I + DL+ +LG AS YYI + IE F+ + G+L
Sbjct: 1817 VENTLSDLEVSKCIEIDNEL-DLSPLNLGMIASYYYINYTTIERFSSLLASKTKMKGLLE 1875
Query: 376 MISQAHEFEQLKVR---DEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRV 432
+++ A E++ + +R ++ + L N + + P R V K + LLQ SR ++
Sbjct: 1876 ILTSASEYDLIPIRPGEEDAVRRLINHQRFSFQNP-RCTDPRV--KTSALLQAHFSRQKI 1932
Query: 433 NSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAI-MAARFLKFALMFETKQWPHETPLRQ 491
+ +LV D V + R+++A+ ++ + N + +A ++ + M W ++ L Q
Sbjct: 1933 SG-NLVMDQCEVLLSATRLLQAMVDV-ISSNGCLNLALLAMEVSQMVTQGMWDRDSMLLQ 1990
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLR--DPHVGDKVKQCAW 549
+ T + P N IE T+ DL EM + +L+ D + D + C
Sbjct: 1991 LPHFTKDLAKRCHENPG--NNIE----TIFDLVEMEDDKRQELLQMSDAQLLDIARFCN- 2043
Query: 550 EIPLLEIESKLL------P---IT-RTVLKIHLTIKANFSWNDKNK--STYAEPFWIWVE 597
P +++ +++ P IT + +L+ + + D + T E +W+ V
Sbjct: 2044 RFPNIDLTYEIVGSNEVSPGKDITLQVLLERDMEGRTEVGPVDAPRYPKTKEEGWWLVVG 2103
Query: 598 DPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSM 657
+ ++ + + + + K++ L +P ++ Y + M D YLG ++S
Sbjct: 2104 EAKTN-----QLMAIKRISLQRKAQVKLEFAVP-TETGEKSYTLYFMCDSYLGCDQEYSF 2157
Query: 658 S 658
+
Sbjct: 2158 T 2158
Score = 179 (68.1 bits), Expect = 2.6e-201, Sum P(3) = 2.6e-201
Identities = 44/96 (45%), Positives = 61/96 (63%)
Query: 14 DEVHLLH-GDRGPVIEALVART-LRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICA 71
DEVH+ + E LV + L + Q F+G++ LNR+QS VY TA +N+L+CA
Sbjct: 469 DEVHVPWVSKKFDSNEKLVKISDLPEWAQPAFRGMQQLNRVQSKVYGTALFKADNILLCA 528
Query: 72 PTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCY 107
PTGAGKTNVA+LTI HQ+ +++ G +N HG Y
Sbjct: 529 PTGAGKTNVAVLTILHQLGLNMNPGGT-FN--HGNY 561
Score = 132 (51.5 bits), Expect = 2.3e-196, Sum P(3) = 2.3e-196
Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
D T+LV+LLIIDE+HLL +RGPV+E++VARTLRQI
Sbjct: 627 DRTYTQLVRLLIIDEIHLLDDNRGPVLESIVARTLRQI 664
Score = 127 (49.8 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 46/160 (28%), Positives = 68/160 (42%)
Query: 93 ISQGTEMYNAKHGC-YVHIGI--LD---VLQIFGRAGRPQYNTSDLGRTASNYYIKHNDI 146
I + T +HG Y+H G+ LD V Q+F AGR Q H +
Sbjct: 1632 ICEETLKETLRHGIGYLHEGLSNLDQEIVTQLF-EAGRIQVCVMSSSLCWGTPLKAHLVV 1690
Query: 147 ELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYL 206
+ GT Y+ + + I ++LQ+ GR RP + +G I + +Y
Sbjct: 1691 VM-------GTHFYDGRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVIFCHAPRKEYYK 1743
Query: 207 SLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
L +P+ES+ L DN NAEV I N +AV +L
Sbjct: 1744 KFLYEALPVESHLQHFLHDNFNAEVVARVIENKQDAVDYL 1783
Score = 112 (44.5 bits), Expect = 1.4e-179, Sum P(3) = 1.4e-179
Identities = 32/107 (29%), Positives = 57/107 (53%)
Query: 64 NENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAG 123
N +LI T A N+ AH + I +GT++YN + G ++ + LDV+Q+ GRAG
Sbjct: 830 NLQVLISTATLAWGVNLP----AHTV---IIKGTQVYNPERGEWMELSPLDVMQMIGRAG 882
Query: 124 RPQYNTSD-----LGRTASNYYIK--HNDIELFTEHMTKGTEMYNAK 163
RPQY+ G + YY++ + + + ++ ++K + NA+
Sbjct: 883 RPQYDQQGEGIIITGYSKLQYYLRLMNEQLPIESQFISKLADQLNAE 929
Score = 97 (39.2 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 27 IEALVARTLRQIGQE-VFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
++ L LR E +++ K N +Q+ V+ Y+T++N+++ APTG+GKT A I
Sbjct: 1329 LQPLPVMALRNPSYETLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAPTGSGKTICAEFAI 1388
Query: 86 AHQIKQHI 93
++ H+
Sbjct: 1389 ---LRNHL 1393
Score = 78 (32.5 bits), Expect = 3.7e-21, Sum P(3) = 3.7e-21
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEV 42
V L I+DE+HL+ G G V+E +V+R +R I +V
Sbjct: 1474 VSLFIVDELHLIGGQGGQVLEVIVSR-MRYISSQV 1507
Score = 68 (29.0 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTEHM 153
+ +DLGR AS YYI H I + E++
Sbjct: 1004 FQVTDLGRIASYYYISHGTIAAYNENL 1030
Score = 56 (24.8 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 131 DLGRTASNYYIKHNDIELFTEHMTKGTEM 159
+LG AS YYI + IE F+ + T+M
Sbjct: 1842 NLGMIASYYYINYTTIERFSSLLASKTKM 1870
Score = 45 (20.9 bits), Expect = 5.1e-31, Sum P(3) = 5.1e-31
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 931 MIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKL 982
M ++SS+ ++ + L T LA + W+ S + N N++ L++
Sbjct: 1500 MRYISSQVGNKIRIVALSTSLANAKDLGEWIGASSCGVFNFPPNVRPVPLEI 1551
>FB|FBgn0263599 [details] [associations]
symbol:l(3)72Ab "lethal (3) 72Ab" species:7227 "Drosophila
melanogaster" [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005682 "U5 snRNP" evidence=ISS] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0007067 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR
GO:GO:0004004 GO:GO:0000381 EMBL:BT016121 EMBL:AY069270
RefSeq:NP_648818.3 UniGene:Dm.973 ProteinModelPortal:Q9VUV9
SMR:Q9VUV9 IntAct:Q9VUV9 STRING:Q9VUV9 PaxDb:Q9VUV9 PRIDE:Q9VUV9
EnsemblMetazoa:FBtr0075527 GeneID:39737 KEGG:dme:Dmel_CG5931
FlyBase:FBgn0036548 InParanoid:Q9VUV9 OrthoDB:EOG4S4MWW
PhylomeDB:Q9VUV9 GenomeRNAi:39737 NextBio:815125 Bgee:Q9VUV9
GermOnline:CG5931 Uniprot:Q9VUV9
Length = 2142
Score = 1511 (537.0 bits), Expect = 8.3e-199, Sum P(3) = 8.3e-199
Identities = 298/740 (40%), Positives = 463/740 (62%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATD 305
L I F++ L D LNAE+ LGT+ ++ +AV WL Y+YL++RM NP YG+S+D + D
Sbjct: 887 LPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGVSHDAIKAD 946
Query: 306 PDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMT 365
P L QHR L+ AA L+++ +I+++ +T +TDLGR AS+YY+ H + + + +
Sbjct: 947 PLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETMLTYNQLLK 1006
Query: 366 KVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQT 425
+ L ++ + + S + EF + VR+EE EL L E IPI+ E KVN+LLQ
Sbjct: 1007 QTLSEIELFRVFSLSSEFRHISVREEEKLELQKL-MERVPIPIKESIEEHSAKVNVLLQA 1065
Query: 426 LLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPH 485
+S+ ++ F+L+SD+ ++ Q+ R++RA+FEI L R A +A + L M + + W
Sbjct: 1066 YISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMIDRRMWQS 1125
Query: 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVK 545
TPLRQ K + + +I K+E++ L ++ E+ ++R P +G +
Sbjct: 1126 MTPLRQFKKMPD----------EIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIH 1175
Query: 546 QCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIY 605
+ + P LE+ + + PITR L++ LTI +F W++K +E FW+ +ED DS+ I
Sbjct: 1176 KFVHQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQ-SEGFWVLIEDVDSELIL 1234
Query: 606 HSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVP 665
H E+FLL KQ ++ E L +P+ +PLP QY +R +SDR++G+ Q +SF+HLI+P
Sbjct: 1235 HHEFFLL--KQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILP 1292
Query: 666 ELHPPHTNLLELQPLPVSALQQPQYESLY--KFSHFNPIQTQIFHCLYHTDNNVLLGAPT 723
E + P T LL+LQPLP+SAL+QP++ES Y +F FNPIQTQ+F+ +Y++D NV +GAPT
Sbjct: 1293 EKNMPPTELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPT 1352
Query: 724 GSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDV 783
GSGK AE R+F +A+ VY+ +AL ADW KF + L KVV+LTG+
Sbjct: 1353 GSGKMTIAEFAIMRLFTTQSDARCVYLVSEEALADLVFADWHSKFGS-LDIKVVKLTGET 1411
Query: 784 TPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVS 843
D++ I+ +++TT +KWD +SR W+ R VQ V L I+DE+ L+G + GPVLE++ S
Sbjct: 1412 GTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVLEIVCS 1471
Query: 844 RVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPG 903
R+ +ISS ++ +R+V LS +L +A+D+A WL +NF PSVRP+PLE+HI G+
Sbjct: 1472 RMRYISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQGYNV 1531
Query: 904 KQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHT 963
R+A M+KP+Y AI ++S KPV++FVSSR+Q RLTAID++T A + P + H
Sbjct: 1532 THNATRIATMSKPVYNAILKYSAHKPVIVFVSSRKQARLTAIDVLTYAASDLQPNRFFHA 1591
Query: 964 SDAEMDNIVDNIKDSNLKLT 983
+ ++ ++ + D LK T
Sbjct: 1592 EEEDIKPFLERMTDKTLKET 1611
Score = 460 (167.0 bits), Expect = 2.4e-39, P = 2.4e-39
Identities = 118/307 (38%), Positives = 171/307 (55%)
Query: 650 GSVVQHSMSFKHLIVPELHP-PHTNLLELQPLP-VSALQQPQYESLYKFSHFNPIQTQIF 707
GS + ++ + VP L P P ELQP+ + QP +E F N IQ++++
Sbjct: 433 GSYRKQRKGYEEVHVPALKPVPFDANEELQPVDKLPKYVQPVFEG---FKTLNRIQSRLY 489
Query: 708 HCLYHTDNNVLLGAPTGSGKTIAAEITCFR-VFKQCPEA--------KVVYIAPLKALVK 758
+D N+LL APTG+GKT A +T R + K E K++Y+AP+K+LV+
Sbjct: 490 KAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQ 549
Query: 759 ERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQS 818
E V ++ + A V ELTGD + I++ VIV TPEKWD ++R R +V
Sbjct: 550 EMVGNFGRRL-ACYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSL 608
Query: 819 VALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNIT 878
V L+IIDEIHLL ++RGPVLE +V+R T+ VRLVGLS L N +D+AT+L +
Sbjct: 609 VRLVIIDEIHLLHDERGPVLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVK 668
Query: 879 K-QGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSR 937
+G++ F S RPV LE G K+ R MN+ +Y +H+ V++FV SR
Sbjct: 669 PDKGLFYFDNSYRPVSLEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVHSR 728
Query: 938 RQTRLTA 944
++T TA
Sbjct: 729 KETGKTA 735
Score = 280 (103.6 bits), Expect = 8.3e-199, Sum P(3) = 8.3e-199
Identities = 53/104 (50%), Positives = 72/104 (69%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++YN + G +V + LDVLQ+ GRAGRPQY+T G +IT H +L YLSLL Q+P
Sbjct: 829 KGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLP 888
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
IES F++ L D LNAE+ LGT+ ++ +AV WL +YI + N
Sbjct: 889 IESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRN 932
Score = 279 (103.3 bits), Expect = 5.2e-57, Sum P(3) = 5.2e-57
Identities = 107/422 (25%), Positives = 189/422 (44%)
Query: 258 DNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIE 317
D+ NAEV TI N +AV +L++++L+ R+ NP Y + + T L H + L+E
Sbjct: 1733 DHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNL---QGVTHRHLSDHLSELVE 1789
Query: 318 NAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMI 377
N L+++ I L + +LG A+ YYI + IELF+ + G+L +I
Sbjct: 1790 NTLSDLEQSKCISVEDDMDTLPL-NLGMIAAYYYINYTTIELFSLSLNSKTKVRGLLEII 1848
Query: 378 SQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENV------HGKVNILLQTLLSRGR 431
S A E+E + VR E L L+Q + G +E H K N+LLQ LSR +
Sbjct: 1849 SSAAEYEDVVVRHHEEQVLRTLSQRLPN-KLTGPNETAPKFNDPHIKTNLLLQAHLSRLQ 1907
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIM-AARFLKFALMFETKQWPHETPLR 490
+ L D E + IR+I+A ++ L N + A ++ A M W ++ L+
Sbjct: 1908 LGP-ELQGDTEQILSKAIRLIQACVDV-LSSNGWLSPAVAAMELAQMVTQAMWSKDSYLK 1965
Query: 491 QIKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR--DPHVGDKVKQC 547
Q+ P P+I+ + ++ + TV D+ E+ ++ + +L+ D + D + C
Sbjct: 1966 QL----------PHFSPEIVKRCTEKKIETVFDIMELEDEDRTRLLQLSDLQMADVARFC 2015
Query: 548 AWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPF---------WIWVED 598
P +E+ +++ R + + D+ PF W+ + D
Sbjct: 2016 N-RYPNIELNYEVVDKDRINSGSTVNVVVQLEREDEVTGPVIAPFFPQKREEGWWVVIGD 2074
Query: 599 PDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMS 658
P ++ LLS K++ + + + + P + Y + MSD YLG ++ S
Sbjct: 2075 PKTNS-------LLSIKRLTLQQKAKVKLDFVAPSPGKHDYTLYYMSDSYLGCDQEYKFS 2127
Query: 659 FK 660
+
Sbjct: 2128 IE 2129
Score = 185 (70.2 bits), Expect = 8.3e-199, Sum P(3) = 8.3e-199
Identities = 41/88 (46%), Positives = 61/88 (69%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQ-GTE 98
Q VF+G K+LNRIQS +Y A ++EN+L+CAPTGAGKTNVA+LT+ +I +HI++ GT
Sbjct: 472 QPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGT- 530
Query: 99 MYNAKHGCYVHIGILDVL--QIFGRAGR 124
NA+ +++ + L ++ G GR
Sbjct: 531 -INAQDFKIIYVAPMKSLVQEMVGNFGR 557
Score = 145 (56.1 bits), Expect = 3.1e-45, Sum P(4) = 3.1e-45
Identities = 33/102 (32%), Positives = 48/102 (47%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T+ YN K+ Y I DVLQ+ GRA RP + ++ K + + + +PIE
Sbjct: 1665 TQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDFFKKFINEPLPIE 1724
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAV---RWLIIYINFVAN 255
S+ + D+ NAEV TI N +AV W +Y N
Sbjct: 1725 SHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQN 1766
Score = 129 (50.5 bits), Expect = 7.3e-177, Sum P(3) = 7.3e-177
Identities = 38/123 (30%), Positives = 67/123 (54%)
Query: 49 LNRI-QSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCY 107
+ R+ ++LV D + +L+ T A N+ AH + I +GT++YN + G +
Sbjct: 789 MTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP----AHTV---IIKGTQVYNPEKGRW 841
Query: 108 VHIGILDVLQIFGRAGRPQYNTSDLGRTASN-----YYIK--HNDIELFTEHMTKGTEMY 160
V + LDVLQ+ GRAGRPQY+T G +N +Y+ + + + ++ ++K +M
Sbjct: 842 VELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISKLPDML 901
Query: 161 NAK 163
NA+
Sbjct: 902 NAE 904
Score = 128 (50.1 bits), Expect = 8.6e-193, Sum P(3) = 8.6e-193
Identities = 24/32 (75%), Positives = 30/32 (93%)
Query: 7 LVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
LV+L+IIDE+HLLH +RGPV+EALVART+R I
Sbjct: 608 LVRLVIIDEIHLLHDERGPVLEALVARTIRNI 639
Score = 91 (37.1 bits), Expect = 3.9e-33, Sum P(3) = 3.9e-33
Identities = 44/181 (24%), Positives = 78/181 (43%)
Query: 6 ELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLV--YDTAYHT 63
+LV L I+DE+ L+ G+ GPV+E + +R +R I ++ K ++ + SL D A
Sbjct: 1445 QLVNLFIVDELQLVGGEEGPVLEIVCSR-MRYISSQIEKQIRIVALSASLTDARDVAQWL 1503
Query: 64 --NENLLI-CAPTGAG---KTNVAMLTIAHQIKQHISQGTEMYNA--KHGCYVHIGILDV 115
N N P+ + ++ + H + + +YNA K+ + + +
Sbjct: 1504 GCNPNATFNFHPSVRPIPLELHIQGYNVTHNATRIATMSKPVYNAILKYSAHKPVIVFVS 1563
Query: 116 LQIFGRAGRPQ---YNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKHG-CYVHIG 171
+ R Y SDL + ++ + DI+ F E MT T G Y+H G
Sbjct: 1564 SRKQARLTAIDVLTYAASDL-QPNRFFHAEEEDIKPFLERMTDKTLKETLAQGVAYLHEG 1622
Query: 172 I 172
+
Sbjct: 1623 L 1623
Score = 89 (36.4 bits), Expect = 6.2e-33, Sum P(3) = 6.2e-33
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 27 IEALVARTLRQIGQEVFKGVK--SLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLT 84
++ L LRQ E F + N IQ+ V++ Y+++EN+ + APTG+GK +A
Sbjct: 1304 LQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMTIAEFA 1363
Query: 85 I 85
I
Sbjct: 1364 I 1364
Score = 75 (31.5 bits), Expect = 1.0e-29, Sum P(3) = 1.0e-29
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRP 125
I T+ YN K+ Y I DVLQ+ GRA RP
Sbjct: 1661 IIMDTQFYNGKNHSYEDYPITDVLQMIGRANRP 1693
Score = 57 (25.1 bits), Expect = 1.1e-43, Sum P(4) = 1.1e-43
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTE 151
+ +DLGR AS+YY+ H + + +
Sbjct: 979 FQVTDLGRIASHYYLTHETMLTYNQ 1003
Score = 54 (24.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 131 DLGRTASNYYIKHNDIELFTEHMTKGTEM 159
+LG A+ YYI + IELF+ + T++
Sbjct: 1813 NLGMIAAYYYINYTTIELFSLSLNSKTKV 1841
>WB|WBGene00012896 [details] [associations]
symbol:snrp-200 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0018991 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272 KO:K12854
OMA:KWDVLSR GO:GO:0008026 EMBL:AL110485 RefSeq:NP_496710.1
ProteinModelPortal:Q9U2G0 SMR:Q9U2G0 IntAct:Q9U2G0
MINT:MINT-1062451 STRING:Q9U2G0 PaxDb:Q9U2G0
EnsemblMetazoa:Y46G5A.4 GeneID:174901 KEGG:cel:CELE_Y46G5A.4
UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4 InParanoid:Q9U2G0
NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 1363 (484.9 bits), Expect = 9.9e-179, Sum P(3) = 9.9e-179
Identities = 274/737 (37%), Positives = 441/737 (59%)
Query: 253 VANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHR 312
V+ L D LNAEV LGT+ ++ EA WL Y++L VRM NP YGI++++ DP L Q R
Sbjct: 887 VSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPTLYGITHEQARADPLLEQRR 946
Query: 313 TTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVG 372
LI A +LDKA +I+++ R+ + T+LGR AS++Y + ++ + + + + D+
Sbjct: 947 ADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCTYESMQTYNKLLVETCSDID 1006
Query: 373 ILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRV 432
+ + S + EF+ L VRDEE EL + + IPI+ + K N+LLQ +S+ ++
Sbjct: 1007 LFRIFSMSSEFKLLSVRDEEKLELQKMAEHA-PIPIKENLDEASAKTNVLLQAYISQLKL 1065
Query: 433 NSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQI 492
F+L +D+ +V Q+ R+ RALFEI L R A +A + L M +QW PL Q
Sbjct: 1066 EGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQF 1125
Query: 493 KLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIP 552
K + + +++ I+++ + + L ++ ++ +++ P +G + + + P
Sbjct: 1126 KKIPS----------EVVRSIDKKNYSFDRLYDLDQHQLGDLIKMPKMGKPLFKFIRQFP 1175
Query: 553 LLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLL 612
LE+ + + PITRT ++I LTI +F W++K + AE FWI++ED D + I H E+FLL
Sbjct: 1176 KLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGS-AEGFWIFIEDTDGEKILHHEFFLL 1234
Query: 613 SKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHT 672
KQ E + M +P+ DP+P Y +R +SDR++G+ +SF+HLI+PE +PP T
Sbjct: 1235 --KQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISFRHLILPEKYPPPT 1292
Query: 673 NLLELQPLPVSALQQPQYESLYK---FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTI 729
LL+LQPLP+SA+ ++++++ F FNPIQTQ+F ++ ++ NV++ AP GSGKT
Sbjct: 1293 ELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKTA 1352
Query: 730 AAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA 789
AE+ R F+ PEAK VYI P++ + + ADWK + E + +V LTG+ T D++
Sbjct: 1353 IAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKL 1412
Query: 790 ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFIS 849
+I++TPE+WD +SR W+ R VQ+V L I D++H++G G V EV+ SR +IS
Sbjct: 1413 AQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRTRYIS 1472
Query: 850 SYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPR 909
S + VR+V LS++L NA+DL WL + +NF PS RPVPL++ I F R
Sbjct: 1473 SQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSHNASR 1532
Query: 910 MAKMNKPIYTAIKQHSPE---KPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTS-- 964
A M +P+Y AI +H+ + KP ++FV RRQTR A+ L+T+ + PK ++ +
Sbjct: 1533 FAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEH 1592
Query: 965 DAEMDNIVDNIKDSNLK 981
D ++ +I+D +L+
Sbjct: 1593 DDTFQALLADIEDESLR 1609
Score = 433 (157.5 bits), Expect = 1.9e-36, P = 1.9e-36
Identities = 117/308 (37%), Positives = 165/308 (53%)
Query: 650 GSVVQHSMSFKHLIVPELHP-PHTN---LLELQPLPVSALQQPQYESLYKFSHFNPIQTQ 705
GS + S++ + VP L P P L+ + LP A QP ++ YK N IQ++
Sbjct: 427 GSYRRQKKSYEEIHVPALKPRPFAEGEKLVSVSELPKWA--QPAFDG-YK--SLNRIQSR 481
Query: 706 IFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFK---------QCPEAKVVYIAPLKAL 756
+ + ++LL APTG+GKT A +T + + E K+VYIAP+K+L
Sbjct: 482 LCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSL 541
Query: 757 VKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYV 816
V+E V + + A V E+TGD + + VIV TPEK+D V+R R Y
Sbjct: 542 VQEMVGSFSKRL-APFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYN 600
Query: 817 QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLN 876
Q V L+IIDEIHLL +DRGPVLE IV R RLVGLS L N +D+AT+L
Sbjct: 601 QMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLR 660
Query: 877 ITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSS 936
+ + ++ F S RPVPLE G K+ R MN+ +Y I +H+ + V++FV S
Sbjct: 661 VKPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHS 720
Query: 937 RRQTRLTA 944
R++T TA
Sbjct: 721 RKETAKTA 728
Score = 267 (99.0 bits), Expect = 9.9e-179, Sum P(3) = 9.9e-179
Identities = 47/104 (45%), Positives = 70/104 (67%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++YN + G + +G LD++Q+ GRAGRPQY+ G +IT H +L +YLSL+ Q+P
Sbjct: 822 KGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLP 881
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
+ES V+ L D LNAEV LGT+ ++ EA WL +++ + N
Sbjct: 882 VESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKN 925
Score = 195 (73.7 bits), Expect = 2.9e-45, Sum P(3) = 2.9e-45
Identities = 94/425 (22%), Positives = 194/425 (45%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L D+ NAE+ TI N +A+ +L+++ L+ RM NP Y + + T L + L
Sbjct: 1731 LHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYNL---QGTTHRHLSDALSEL 1787
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
+E + L+ + I D +LG AS YYI + IELF+ + + ++
Sbjct: 1788 VELTLKDLENSKCIAVKDEM-DTVSLNLGMIASYYYISYQTIELFSMSLKEKTKTRALIE 1846
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCE-IPIRGGSENV---HGKVNILLQTLLSRGR 431
+IS + EF + +R H+ D + ++ E +P + ++ H KVN+L+ LSR +
Sbjct: 1847 IISASSEFGNVPMR----HKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVK 1902
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAA-RFLKFALMFETKQWPHETPLR 490
+ + L D E + R+++A ++ L N + A ++ + M + +E L+
Sbjct: 1903 LTA-ELNKDTELIVLRACRLVQACVDV-LSSNGWLSPAIHAMELSQMLTQAMYSNEPYLK 1960
Query: 491 QIKLVTNRGYQSPILKPDILNKIEQRGLT-VEDLREMPAKEISYMLR--DPHVGDKVKQC 547
Q+ P +L + + + +T V +L E+ + S +L+ + D + C
Sbjct: 1961 QL----------PHCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELADVARFC 2010
Query: 548 AWEIPLLEIESKL---LPITRTVLKIHLTIKANFSWNDKNKSTYA---------EPFWIW 595
P +E+ ++L + + L + ++++ + + A E +W+
Sbjct: 2011 N-HYPSIEVATELENDVVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLV 2069
Query: 596 VEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQH 655
+ D +S+ LL+ K+++ + S+ + P +++ + +SD YLG+ +
Sbjct: 2070 IGDSESNA-------LLTIKRLVINEKSSVQLDFAAPRPGHHKFKLFFISDSYLGADQEF 2122
Query: 656 SMSFK 660
++FK
Sbjct: 2123 DVAFK 2127
Score = 170 (64.9 bits), Expect = 9.9e-179, Sum P(3) = 9.9e-179
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 28 EALVART-LRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIA 86
E LV+ + L + Q F G KSLNRIQS + D+A + E+LL+CAPTGAGKTNVA+LT+
Sbjct: 453 EKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTML 512
Query: 87 HQIKQHISQ 95
+I H+++
Sbjct: 513 QEIGNHLAE 521
Score = 134 (52.2 bits), Expect = 6.2e-175, Sum P(3) = 6.2e-175
Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 3 ALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQ 40
A ++V+LLIIDE+HLLH DRGPV+E++V RT+RQ+ Q
Sbjct: 598 AYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQMEQ 635
Score = 133 (51.9 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 30/102 (29%), Positives = 49/102 (48%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T+ YN K+ Y I D+L + G A RP ++ ++ K +Y L + +P+E
Sbjct: 1665 TQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVE 1724
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAV---RWLIIYINFVAN 255
S+ L D+ NAE+ TI N +A+ W ++Y N
Sbjct: 1725 SHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQN 1766
Score = 129 (50.5 bits), Expect = 2.2e-160, Sum P(3) = 2.2e-160
Identities = 37/123 (30%), Positives = 67/123 (54%)
Query: 49 LNRI-QSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCY 107
+NR+ ++LV D + +L T A N+ AH + I +GT++YN + G +
Sbjct: 782 MNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLP----AHTV---IIKGTQIYNPEKGRW 834
Query: 108 VHIGILDVLQIFGRAGRPQYNTSDLGRTASN-----YYIK--HNDIELFTEHMTKGTEMY 160
+G LD++Q+ GRAGRPQY+ G +N YY+ + + + ++ +++ T+M
Sbjct: 835 TELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDML 894
Query: 161 NAK 163
NA+
Sbjct: 895 NAE 897
Score = 113 (44.8 bits), Expect = 6.6e-34, Sum P(4) = 6.6e-34
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 40 QEVF--KGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
Q VF G K N IQ+ V+ T + +NEN+++CAP G+GKT +A L +
Sbjct: 1311 QTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAV 1358
Score = 66 (28.3 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
VKL I D++H++ G V E + +RT R I ++ V+ + SL
Sbjct: 1442 VKLFIADDLHMIGASNGAVFEVVCSRT-RYISSQLESAVRVVALSSSL 1488
Score = 59 (25.8 bits), Expect = 2.5e-26, Sum P(4) = 2.5e-26
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 97 TEMYNAKHGCYVHIGILDVLQIFGRAGRP 125
T+ YN K+ Y I D+L + G A RP
Sbjct: 1665 TQFYNGKYHVYEDYPIADMLHMVGLANRP 1693
Score = 57 (25.1 bits), Expect = 3.9e-12, Sum P(4) = 3.9e-12
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 131 DLGRTASNYYIKHNDIELFTEHMTKGTE 158
+LG AS YYI + IELF+ + + T+
Sbjct: 1813 NLGMIASYYYISYQTIELFSMSLKEKTK 1840
Score = 42 (19.8 bits), Expect = 2.6e-30, Sum P(4) = 2.6e-30
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 130 SDLGRTASNYYIKHNDIELFTE 151
++LGR AS++Y + ++ + +
Sbjct: 975 TELGRIASHFYCTYESMQTYNK 996
Score = 37 (18.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 386 LKVRDEELHELDN 398
L+V+ E LH DN
Sbjct: 659 LRVKPEHLHFFDN 671
>UNIPROTKB|Q9U2G0 [details] [associations]
symbol:Y46G5A.4 "Putative U5 small nuclear
ribonucleoprotein 200 kDa helicase" species:6239 "Caenorhabditis
elegans" [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
EMBL:AL110485 RefSeq:NP_496710.1 ProteinModelPortal:Q9U2G0
SMR:Q9U2G0 IntAct:Q9U2G0 MINT:MINT-1062451 STRING:Q9U2G0
PaxDb:Q9U2G0 EnsemblMetazoa:Y46G5A.4 GeneID:174901
KEGG:cel:CELE_Y46G5A.4 UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4
InParanoid:Q9U2G0 NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 1363 (484.9 bits), Expect = 9.9e-179, Sum P(3) = 9.9e-179
Identities = 274/737 (37%), Positives = 441/737 (59%)
Query: 253 VANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHR 312
V+ L D LNAEV LGT+ ++ EA WL Y++L VRM NP YGI++++ DP L Q R
Sbjct: 887 VSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPTLYGITHEQARADPLLEQRR 946
Query: 313 TTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVG 372
LI A +LDKA +I+++ R+ + T+LGR AS++Y + ++ + + + + D+
Sbjct: 947 ADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCTYESMQTYNKLLVETCSDID 1006
Query: 373 ILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRV 432
+ + S + EF+ L VRDEE EL + + IPI+ + K N+LLQ +S+ ++
Sbjct: 1007 LFRIFSMSSEFKLLSVRDEEKLELQKMAEHA-PIPIKENLDEASAKTNVLLQAYISQLKL 1065
Query: 433 NSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQI 492
F+L +D+ +V Q+ R+ RALFEI L R A +A + L M +QW PL Q
Sbjct: 1066 EGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQF 1125
Query: 493 KLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIP 552
K + + +++ I+++ + + L ++ ++ +++ P +G + + + P
Sbjct: 1126 KKIPS----------EVVRSIDKKNYSFDRLYDLDQHQLGDLIKMPKMGKPLFKFIRQFP 1175
Query: 553 LLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLL 612
LE+ + + PITRT ++I LTI +F W++K + AE FWI++ED D + I H E+FLL
Sbjct: 1176 KLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGS-AEGFWIFIEDTDGEKILHHEFFLL 1234
Query: 613 SKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHT 672
KQ E + M +P+ DP+P Y +R +SDR++G+ +SF+HLI+PE +PP T
Sbjct: 1235 --KQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISFRHLILPEKYPPPT 1292
Query: 673 NLLELQPLPVSALQQPQYESLYK---FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTI 729
LL+LQPLP+SA+ ++++++ F FNPIQTQ+F ++ ++ NV++ AP GSGKT
Sbjct: 1293 ELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKTA 1352
Query: 730 AAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA 789
AE+ R F+ PEAK VYI P++ + + ADWK + E + +V LTG+ T D++
Sbjct: 1353 IAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKL 1412
Query: 790 ISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFIS 849
+I++TPE+WD +SR W+ R VQ+V L I D++H++G G V EV+ SR +IS
Sbjct: 1413 AQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRTRYIS 1472
Query: 850 SYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPR 909
S + VR+V LS++L NA+DL WL + +NF PS RPVPL++ I F R
Sbjct: 1473 SQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSHNASR 1532
Query: 910 MAKMNKPIYTAIKQHSPE---KPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTS-- 964
A M +P+Y AI +H+ + KP ++FV RRQTR A+ L+T+ + PK ++ +
Sbjct: 1533 FAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLRLAEH 1592
Query: 965 DAEMDNIVDNIKDSNLK 981
D ++ +I+D +L+
Sbjct: 1593 DDTFQALLADIEDESLR 1609
Score = 433 (157.5 bits), Expect = 1.9e-36, P = 1.9e-36
Identities = 117/308 (37%), Positives = 165/308 (53%)
Query: 650 GSVVQHSMSFKHLIVPELHP-PHTN---LLELQPLPVSALQQPQYESLYKFSHFNPIQTQ 705
GS + S++ + VP L P P L+ + LP A QP ++ YK N IQ++
Sbjct: 427 GSYRRQKKSYEEIHVPALKPRPFAEGEKLVSVSELPKWA--QPAFDG-YK--SLNRIQSR 481
Query: 706 IFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFK---------QCPEAKVVYIAPLKAL 756
+ + ++LL APTG+GKT A +T + + E K+VYIAP+K+L
Sbjct: 482 LCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSL 541
Query: 757 VKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYV 816
V+E V + + A V E+TGD + + VIV TPEK+D V+R R Y
Sbjct: 542 VQEMVGSFSKRL-APFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYN 600
Query: 817 QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLN 876
Q V L+IIDEIHLL +DRGPVLE IV R RLVGLS L N +D+AT+L
Sbjct: 601 QMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLR 660
Query: 877 ITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSS 936
+ + ++ F S RPVPLE G K+ R MN+ +Y I +H+ + V++FV S
Sbjct: 661 VKPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHS 720
Query: 937 RRQTRLTA 944
R++T TA
Sbjct: 721 RKETAKTA 728
Score = 267 (99.0 bits), Expect = 9.9e-179, Sum P(3) = 9.9e-179
Identities = 47/104 (45%), Positives = 70/104 (67%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++YN + G + +G LD++Q+ GRAGRPQY+ G +IT H +L +YLSL+ Q+P
Sbjct: 822 KGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLP 881
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
+ES V+ L D LNAEV LGT+ ++ EA WL +++ + N
Sbjct: 882 VESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKN 925
Score = 195 (73.7 bits), Expect = 2.9e-45, Sum P(3) = 2.9e-45
Identities = 94/425 (22%), Positives = 194/425 (45%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L D+ NAE+ TI N +A+ +L+++ L+ RM NP Y + + T L + L
Sbjct: 1731 LHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPNYYNL---QGTTHRHLSDALSEL 1787
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
+E + L+ + I D +LG AS YYI + IELF+ + + ++
Sbjct: 1788 VELTLKDLENSKCIAVKDEM-DTVSLNLGMIASYYYISYQTIELFSMSLKEKTKTRALIE 1846
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCE-IPIRGGSENV---HGKVNILLQTLLSRGR 431
+IS + EF + +R H+ D + ++ E +P + ++ H KVN+L+ LSR +
Sbjct: 1847 IISASSEFGNVPMR----HKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVK 1902
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAA-RFLKFALMFETKQWPHETPLR 490
+ + L D E + R+++A ++ L N + A ++ + M + +E L+
Sbjct: 1903 LTA-ELNKDTELIVLRACRLVQACVDV-LSSNGWLSPAIHAMELSQMLTQAMYSNEPYLK 1960
Query: 491 QIKLVTNRGYQSPILKPDILNKIEQRGLT-VEDLREMPAKEISYMLR--DPHVGDKVKQC 547
Q+ P +L + + + +T V +L E+ + S +L+ + D + C
Sbjct: 1961 QL----------PHCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELADVARFC 2010
Query: 548 AWEIPLLEIESKL---LPITRTVLKIHLTIKANFSWNDKNKSTYA---------EPFWIW 595
P +E+ ++L + + L + ++++ + + A E +W+
Sbjct: 2011 N-HYPSIEVATELENDVVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLV 2069
Query: 596 VEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQH 655
+ D +S+ LL+ K+++ + S+ + P +++ + +SD YLG+ +
Sbjct: 2070 IGDSESNA-------LLTIKRLVINEKSSVQLDFAAPRPGHHKFKLFFISDSYLGADQEF 2122
Query: 656 SMSFK 660
++FK
Sbjct: 2123 DVAFK 2127
Score = 170 (64.9 bits), Expect = 9.9e-179, Sum P(3) = 9.9e-179
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 28 EALVART-LRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIA 86
E LV+ + L + Q F G KSLNRIQS + D+A + E+LL+CAPTGAGKTNVA+LT+
Sbjct: 453 EKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTML 512
Query: 87 HQIKQHISQ 95
+I H+++
Sbjct: 513 QEIGNHLAE 521
Score = 134 (52.2 bits), Expect = 6.2e-175, Sum P(3) = 6.2e-175
Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 3 ALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQ 40
A ++V+LLIIDE+HLLH DRGPV+E++V RT+RQ+ Q
Sbjct: 598 AYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQMEQ 635
Score = 133 (51.9 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 30/102 (29%), Positives = 49/102 (48%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T+ YN K+ Y I D+L + G A RP ++ ++ K +Y L + +P+E
Sbjct: 1665 TQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVE 1724
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAV---RWLIIYINFVAN 255
S+ L D+ NAE+ TI N +A+ W ++Y N
Sbjct: 1725 SHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQN 1766
Score = 129 (50.5 bits), Expect = 2.2e-160, Sum P(3) = 2.2e-160
Identities = 37/123 (30%), Positives = 67/123 (54%)
Query: 49 LNRI-QSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCY 107
+NR+ ++LV D + +L T A N+ AH + I +GT++YN + G +
Sbjct: 782 MNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLP----AHTV---IIKGTQIYNPEKGRW 834
Query: 108 VHIGILDVLQIFGRAGRPQYNTSDLGRTASN-----YYIK--HNDIELFTEHMTKGTEMY 160
+G LD++Q+ GRAGRPQY+ G +N YY+ + + + ++ +++ T+M
Sbjct: 835 TELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDML 894
Query: 161 NAK 163
NA+
Sbjct: 895 NAE 897
Score = 113 (44.8 bits), Expect = 6.6e-34, Sum P(4) = 6.6e-34
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 40 QEVF--KGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
Q VF G K N IQ+ V+ T + +NEN+++CAP G+GKT +A L +
Sbjct: 1311 QTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAV 1358
Score = 66 (28.3 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSL 55
VKL I D++H++ G V E + +RT R I ++ V+ + SL
Sbjct: 1442 VKLFIADDLHMIGASNGAVFEVVCSRT-RYISSQLESAVRVVALSSSL 1488
Score = 59 (25.8 bits), Expect = 2.5e-26, Sum P(4) = 2.5e-26
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 97 TEMYNAKHGCYVHIGILDVLQIFGRAGRP 125
T+ YN K+ Y I D+L + G A RP
Sbjct: 1665 TQFYNGKYHVYEDYPIADMLHMVGLANRP 1693
Score = 57 (25.1 bits), Expect = 3.9e-12, Sum P(4) = 3.9e-12
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 131 DLGRTASNYYIKHNDIELFTEHMTKGTE 158
+LG AS YYI + IELF+ + + T+
Sbjct: 1813 NLGMIASYYYISYQTIELFSMSLKEKTK 1840
Score = 42 (19.8 bits), Expect = 2.6e-30, Sum P(4) = 2.6e-30
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 130 SDLGRTASNYYIKHNDIELFTE 151
++LGR AS++Y + ++ + +
Sbjct: 975 TELGRIASHFYCTYESMQTYNK 996
Score = 37 (18.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 386 LKVRDEELHELDN 398
L+V+ E LH DN
Sbjct: 659 LRVKPEHLHFFDN 671
>DICTYBASE|DDB_G0270042 [details] [associations]
symbol:ascc3l "U5 small nuclear ribonucleoprotein 200
kDa helicase" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 dictyBase:DDB_G0270042 GO:GO:0005524
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 KO:K12854 OMA:KWDVLSR GO:GO:0008026
RefSeq:XP_646493.1 ProteinModelPortal:Q55CI8 STRING:Q55CI8
EnsemblProtists:DDB0233131 GeneID:8617455 KEGG:ddi:DDB_G0270042
InParanoid:Q55CI8 ProtClustDB:CLSZ2431432 Uniprot:Q55CI8
Length = 2237
Score = 1404 (499.3 bits), Expect = 1.4e-178, Sum P(3) = 1.4e-178
Identities = 281/709 (39%), Positives = 448/709 (63%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATD 305
L I F++ +ADNLNAE+ LG+I + +AV WL Y+YL++ M NP Y ISYD+ D
Sbjct: 956 LSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYTYLYICMIRNPPLYEISYDDFEKD 1015
Query: 306 PDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMT 365
P L Q R L+ +AA IL+K +I+++ ++ L T+LG+ AS+YYI ++ + ++ EH+
Sbjct: 1016 PLLEQRRLDLVHSAATILEKNSLIKYDRKSGKLQSTELGKVASHYYITNSSMSIYQEHLK 1075
Query: 366 KVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQT 425
+ D+ +L + S + EF+ + VR+ E EL+ L + IPI+ E K+N+LLQT
Sbjct: 1076 PSMSDIELLRVFSLSSEFKNVVVREGEKFELEKLLERV-PIPIKENIEEPSSKINVLLQT 1134
Query: 426 LLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPH 485
+S +++ F+LV D+ Y+ Q+ RI RALFEI L + A +A + L A M ++K W
Sbjct: 1135 YISNLKLDGFALVVDMFYIAQSASRITRALFEIVLKKGWAQLAKKILNLAKMIDSKMWSS 1194
Query: 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVK 545
++PLRQ ++ P +LN++E+RG+ +EDL E ++++ +++P G ++
Sbjct: 1195 QSPLRQFHKIS----------PKVLNQLERRGIPIEDLYEYNSQQLGNAIQNPSEGKQLF 1244
Query: 546 QCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIY 605
P L++ + + PI +L++ L+I +F ++++ + + +WI VED D + I
Sbjct: 1245 DLIHNFPKLDLTAHVQPILHGLLRVELSITPDFQYDERYHNN-SIGWWIIVEDVDGERIL 1303
Query: 606 HSEYFLLSKKQVITKSEESLI-MTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIV 664
+ EYF L KK V E+ L+ T+PLS PLP QY +R +SD ++G+ +SF+HLI+
Sbjct: 1304 YFEYFSLKKKMV--NGEDQLVSFTVPLSQPLPPQYYVRVISDHWIGAEYSLPISFQHLIL 1361
Query: 665 PELHPPHTNLLELQPLPVSALQQPQYESLYK--FSHFNPIQTQIFHCLYHTDNNVLLGAP 722
PE +PP LL+LQPLP+ L+ P+ ES++K FS FN IQTQ+F+C+Y +++N + AP
Sbjct: 1362 PEKYPPCRPLLDLQPLPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISAP 1421
Query: 723 TGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV--ELT 780
T SGKT+ AEI R FKQ P+AKVVY+AP++ L R+ DW KF + +V +LT
Sbjct: 1422 TNSGKTVCAEIALIRCFKQNPKAKVVYLAPMQDLASVRLKDWSNKFGVKSPFGLVVSDLT 1481
Query: 781 GDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEV 840
GD D + + +++IVT EKWD +SR W+ R +QS+ L+I+DE+HL+G + GP +E+
Sbjct: 1482 GDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEYGPTMEI 1541
Query: 841 IVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISG 900
+VSR+ +IS+ T +R++ LS+++ANA+DL W+ T Q YNF P+VRP+P+E I G
Sbjct: 1542 VVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFHPNVRPIPVEYQIQG 1601
Query: 901 FPGKQYCPRMAKMNKP-IYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLI 948
F + RM M KP +Y K + + ++FV +R+ +R A D+I
Sbjct: 1602 FEFPHFNARMLAMTKPTVYEVAKNKNQQS--IVFVPTRKLSRSLAADII 1648
Score = 480 (174.0 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 126/315 (40%), Positives = 180/315 (57%)
Query: 650 GSVVQHSMSFKHLIVP-ELHPP---HTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQ 705
GS + F+ + VP +PP + L+ ++ LP + + P ES K N +Q++
Sbjct: 502 GSKREQYKGFEEIHVPARANPPFNPNERLISIEELPEWS-RLPFEESGVK--SLNRVQSK 558
Query: 706 IFHCLYHTDNNVLLGAPTGSGKTIAAEITCFR-VFK---------QCPEAKVVYIAPLKA 755
+F C + TDNN+LL APT SGKT A +T + K + K+VYIAP+K+
Sbjct: 559 LFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKS 618
Query: 756 LVKERVADWKVKFEARLKKK--VV-ELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQN 812
LV+E V + F RLK VV ELTGD + + IS +IVTTPEKWD ++R +
Sbjct: 619 LVQEMVGN----FSKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITRKSGD 674
Query: 813 RNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLA 872
R Y Q V LIIIDEIHLL ++RGPVLE IV+R + T++ VRLVGLS L N +D+A
Sbjct: 675 RAYTQLVKLIIIDEIHLLHDERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDVA 734
Query: 873 TWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMI 932
T+L + G++ F S RP+PLE G + ++ + N +T + + + ++I
Sbjct: 735 TFLRVEPDGVFYFDSSYRPIPLEQQYIGISDRGI-KQLQRCNDITFTKVSERVGDHQILI 793
Query: 933 FVSSRRQTRLTAIDL 947
FV SRR+T T DL
Sbjct: 794 FVHSRRETAKTGKDL 808
Score = 244 (91.0 bits), Expect = 5.9e-46, Sum P(3) = 5.9e-46
Identities = 80/301 (26%), Positives = 149/301 (49%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L D N+E+ TI +A+ +L++++L+ R+ NP Y +S + L +H + L
Sbjct: 1811 LHDQFNSEIVTKTITKKQDALDYLTWTFLYRRLNQNPNYYNLSG---VSHLHLSEHLSEL 1867
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
+EN L++++ I ++ +LG AS YY+K+ IELF + GI+
Sbjct: 1868 VENTLVELEQSNCITIQDDQDKVSPLNLGIIASYYYLKYQTIELFGSSLKSTTRRRGIMD 1927
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSF 435
+IS A EF L +R E L L + + + + KVN+LLQ SR +++
Sbjct: 1928 IISNAPEFNSLPIRHREDQILMKLASHLPQKIDKPNYQEISTKVNVLLQCHFSRESISA- 1986
Query: 436 SLVSDLEYVNQNVIRIIRALFEITLHRNN----AIMAARFLKFAL--MFET----KQWPH 485
L D +++ +N R+++A+ ++ + N+ AI A + M+++ KQ PH
Sbjct: 1987 DLYQDQKFILENATRLLQAIVDV-ISSNSWLQPAIAAMELSQMITQAMWDSDSVFKQLPH 2045
Query: 486 ETPLRQIKLVTNRGYQS--PILKPDILNKIEQRGLT-------VEDLREMPAKEISYMLR 536
R+I +T++G +S ++ D ++I+ L+ V+ + P +ISY ++
Sbjct: 2046 MNK-RRIDAITSQGIESVFDLMSLDDNSRIQLLDLSQQESNDLVQSFMKYPDIDISYQVQ 2104
Query: 537 D 537
D
Sbjct: 2105 D 2105
Score = 238 (88.8 bits), Expect = 1.4e-178, Sum P(3) = 1.4e-178
Identities = 48/104 (46%), Positives = 67/104 (64%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++YN + G + + LDV Q+ GRAGRP ++ G IIT +L YLSLL Q+
Sbjct: 899 KGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHELQFYLSLLNTQLS 957
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
IES F++ +ADNLNAE+ LG+I + +AV WL +YI + N
Sbjct: 958 IESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYTYLYICMIRN 1001
Score = 158 (60.7 bits), Expect = 1.4e-178, Sum P(3) = 1.4e-178
Identities = 30/45 (66%), Positives = 38/45 (84%)
Query: 45 GVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQI 89
GVKSLNR+QS ++D A+ T+ NLL+ APT +GKTNVAMLTI H+I
Sbjct: 548 GVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEI 592
Score = 141 (54.7 bits), Expect = 8.7e-177, Sum P(3) = 8.7e-177
Identities = 27/38 (71%), Positives = 33/38 (86%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
D A T+LVKL+IIDE+HLLH +RGPV+E +VARTLR I
Sbjct: 674 DRAYTQLVKLIIIDEIHLLHDERGPVLECIVARTLRMI 711
Score = 111 (44.1 bits), Expect = 1.8e-35, Sum P(4) = 1.8e-35
Identities = 29/102 (28%), Positives = 47/102 (46%)
Query: 156 GTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ-----YNTSGHATIITPHEKLNHYLSLLT 210
GT++Y K Y+ I D+LQ+ GRAG+ + N ++ K +Y L
Sbjct: 1739 GTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVISNKVAKVLLLCHAPKKEYYKMFLN 1798
Query: 211 NQIPIESNFVANLADNLNAEVALGTIGNIDEAV---RWLIIY 249
+P+ES+ L D N+E+ TI +A+ W +Y
Sbjct: 1799 EPLPVESHLDHCLHDQFNSEIVTKTITKKQDALDYLTWTFLY 1840
Score = 93 (37.8 bits), Expect = 1.8e-35, Sum P(4) = 1.8e-35
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 40 QEVFKGVKSL-NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
+ +FK S+ N IQ+ V++ Y +N+N I APT +GKT A + + KQ+
Sbjct: 1388 ESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISAPTNSGKTVCAEIALIRCFKQN 1441
Score = 89 (36.4 bits), Expect = 4.5e-161, Sum P(3) = 4.5e-161
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 53 QSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGI 112
+SLV D +LI T A N+ AH + I +GT++YN + G + +
Sbjct: 864 RSLVEDLFGDNRIQVLISTATLAWGVNLP----AHTV---IIKGTQIYNPEKG-WCELSP 915
Query: 113 LDVLQIFGRAGRPQYNTSDLG 133
LDV Q+ GRAGRP ++ G
Sbjct: 916 LDVTQMLGRAGRPPFDKEGEG 936
Score = 79 (32.9 bits), Expect = 2.1e-23, Sum P(4) = 2.1e-23
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQE 41
+ LLI+DE+HL+ G+ GP +E +V+R +R I +
Sbjct: 1520 INLLIVDELHLIGGEYGPTMEIVVSR-MRYISTQ 1552
Score = 70 (29.7 bits), Expect = 2.9e-31, Sum P(4) = 2.9e-31
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+ GT++Y K Y+ I D+LQ+ GRAG+ +
Sbjct: 1736 VIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQE 1769
Score = 66 (28.3 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 11/33 (33%), Positives = 25/33 (75%)
Query: 121 RAGRPQYNTSDLGRTASNYYIKHNDIELFTEHM 153
++G+ Q +++LG+ AS+YYI ++ + ++ EH+
Sbjct: 1044 KSGKLQ--STELGKVASHYYITNSSMSIYQEHL 1074
Score = 55 (24.4 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 131 DLGRTASNYYIKHNDIELFTEHMTKGT 157
+LG AS YY+K+ IELF + T
Sbjct: 1894 NLGIIASYYYLKYQTIELFGSSLKSTT 1920
Score = 38 (18.4 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 701 PIQTQIFHCLYHTDNNVLL 719
P+++ + HCL+ N+ ++
Sbjct: 1802 PVESHLDHCLHDQFNSEIV 1820
Score = 37 (18.1 bits), Expect = 9.9e-30, Sum P(4) = 9.9e-30
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 56 VYDTAYHTNENLLICAPTGAGKTNVAMLTIAH 87
VY+ A + N+ ++ PT ++A IA+
Sbjct: 1619 VYEVAKNKNQQSIVFVPTRKLSRSLAADIIAN 1650
>ASPGD|ASPL0000051297 [details] [associations]
symbol:AN10194 species:162425 "Emericella nidulans"
[GO:0000393 "spliceosomal conformational changes to generate
catalytic conformation" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:BN001307
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0046540 GO:GO:0000388 GO:GO:0008026
EnsemblFungi:CADANIAT00008099 OMA:AMNEACY Uniprot:C8VMF3
Length = 2208
Score = 1345 (478.5 bits), Expect = 4.5e-172, Sum P(3) = 4.5e-172
Identities = 277/738 (37%), Positives = 439/738 (59%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATD 305
L I V+ LADN+NAE+ LG I DE V WL Y+YL VRM +P Y + D D
Sbjct: 942 LPIESQLVSKLADNMNAEIVLGNIRTRDEGVDWLGYTYLFVRMLRSPGLYSVGAD-YEND 1000
Query: 306 PDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMT 365
L Q R L+ +AA +L+KA +++++ +T L T+LGR AS+YYI HN + + +H+
Sbjct: 1001 DALEQKRVDLVHSAAVLLEKAGLVKYDKKTGRLQSTELGRIASHYYIGHNSMLTYNQHLQ 1060
Query: 366 KVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQT 425
+ ++ + + + + EF+ + VR +E EL + +P++ G + H K+N+LLQ
Sbjct: 1061 PSIGNIELFRIFALSDEFKYIPVRQDEKLELAKMLGRV-PVPVKEGIDEPHAKINVLLQA 1119
Query: 426 LLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPH 485
+SR ++ +L++DL YV Q+ RI+RALFEI L R A +A L M E + WP
Sbjct: 1120 YISRLKLEGLALMADLVYVTQSAGRILRALFEICLRRGWASVAKNALDLCKMAERRMWPT 1179
Query: 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVK 545
+PLRQ P DIL K E+ + ++ + +L P G V
Sbjct: 1180 MSPLRQF----------PRCPRDILQKSERIDVPWGSYFDLDPPRMGELLGMPRAGKTVC 1229
Query: 546 QCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIY 605
+ P LE+++++ PITR++L++ LTI NF W+++ T A+ FWI VED D + I
Sbjct: 1230 DLVSKFPRLEVQAQVQPITRSMLRVELTITPNFVWDEELHGT-AQDFWIMVEDCDGEEIL 1288
Query: 606 HSEYFLLSKKQVITKSEESLI-MTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIV 664
+ F+L K ++ E L+ T+P+++P+P Y I +SDR++ S + ++SF+ LI+
Sbjct: 1289 FHDQFVLRKDYAESEMNEHLVEFTVPITEPMPPNYFISLVSDRWMHSETRIAVSFQKLIL 1348
Query: 665 PELHPPHTNLLELQPLPVSALQQPQYESLYK-FSHFNPIQTQIFHCLYHTDNNVLLGAPT 723
PE PPHT LL++Q PV AL++ +Y+ LY + +FN IQTQ F L+ +D+NV +GAPT
Sbjct: 1349 PERFPPHTPLLDMQRAPVKALKRDEYQRLYPDWEYFNKIQTQTFKTLFESDDNVFIGAPT 1408
Query: 724 GSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK-KKVVELTGD 782
GSGKT+ AE+ R + + + VY+AP + L+ R+ DWK + K + +LTG+
Sbjct: 1409 GSGKTVCAELAILRHWAKEDSGRAVYVAPFQELIDSRLEDWKKRLSGLAGGKSIAKLTGE 1468
Query: 783 VTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIV 842
+T D++ ++ + +++ TP +WD +SR WQ R V++V L + DE+H+LG G V EV+V
Sbjct: 1469 MTADLKILAGSDLVLATPTQWDVLSRQWQKRKNVRAVELFVADELHMLGGYGGYVYEVVV 1528
Query: 843 SRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFP 902
SR++ I+ T+ +R+VGLS L+NA+D+ W+ +K +YNF P RPVPLE+HI F
Sbjct: 1529 SRMHSIALQTESGMRIVGLSVPLSNARDIGEWIGASKHTIYNFSPHARPVPLELHIQSFS 1588
Query: 903 GKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVH 962
+ M M +P Y +I Q S +KP +IFV +R+QTR TAIDL+T + + + ++H
Sbjct: 1589 IPHFPSLMLAMARPAYLSILQLSADKPALIFVPNRKQTRATAIDLLTACSIDDDEDRFLH 1648
Query: 963 TSDAEMDNIVDNIKDSNL 980
E+ ++ + + L
Sbjct: 1649 ADIEELQPLLGRVHERTL 1666
Score = 407 (148.3 bits), Expect = 1.3e-33, P = 1.3e-33
Identities = 107/258 (41%), Positives = 151/258 (58%)
Query: 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFR-VFK----QCPEA-----KVVY 749
N IQT+ + + D N+L+ APTGSGKT A ++ R V K Q E K+VY
Sbjct: 534 NRIQTKCYPSAFQDDGNMLVCAPTGSGKTNVAMLSILREVGKNRNSQTGEIMLDDFKIVY 593
Query: 750 IAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS 809
I+PLKALV+E+V ++ + A KV ELTGD Q I+ VIVTTPEK+D ++R
Sbjct: 594 ISPLKALVQEQVENFGRRL-APYGIKVAELTGDRQLTKQQIAETQVIVTTPEKFDVITRK 652
Query: 810 WQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAK 869
+Y + V LIIIDEIHLL ++RGPV+E IVSR T VR+VGLS L N +
Sbjct: 653 ASETSYTKLVRLIIIDEIHLLHDERGPVIESIVSRTIRQVEQTGDAVRIVGLSATLPNYR 712
Query: 870 DLATWLNITK-QGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEK 928
D+A++L + +G+++F S RP PL+ G K+ ++ MN Y + +H +
Sbjct: 713 DVASFLRVDPAKGLFHFDGSYRPCPLKQEFIGVTDKKPIKQLKIMNDICYNKVIEHVGQN 772
Query: 929 --PVMIFVSSRRQTRLTA 944
++IFV SR++T TA
Sbjct: 773 RNQMLIFVHSRKETAKTA 790
Score = 254 (94.5 bits), Expect = 4.5e-172, Sum P(3) = 4.5e-172
Identities = 48/92 (52%), Positives = 64/92 (69%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y+ + G +V + DVLQ+ GRAGRPQY+T G IIT ++ +YLSL+ Q+P
Sbjct: 884 KGTQVYSPEKGSWVELSPQDVLQMLGRAGRPQYDTYGEGIIITTQAEIQYYLSLMNQQLP 943
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
IES V+ LADN+NAE+ LG I DE V WL
Sbjct: 944 IESQLVSKLADNMNAEIVLGNIRTRDEGVDWL 975
Score = 194 (73.4 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 57/238 (23%), Positives = 114/238 (47%)
Query: 258 DNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIE 317
D E++ GTI + ++V WL+Y+Y + R+ NP YG++ +++ + L + L+E
Sbjct: 1791 DAFVTEISQGTIASTQDSVDWLTYTYFYRRLLANPSFYGLT--DISHE-GLSTFLSELVE 1847
Query: 318 NAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMI 377
N + L +A +I + ++ + + Y I + ++ F ++ GIL ++
Sbjct: 1848 NTLKELSEAKIIDLDEEDDSVSPLNAASIGAYYNISYITMQTFLLSLSARTKLKGILEIV 1907
Query: 378 SQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGS---ENVHGKVNILLQTLLSRGRVNS 434
+ A EFE +++R E H L + +P++ ++ H K +LLQ SR ++
Sbjct: 1908 TAATEFESVQMRRHEEHILRRVYDR---VPVKTSQVAFDSPHFKSFVLLQAHFSRMQL-P 1963
Query: 435 FSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQI 492
L D E + + ++ A +I L + A ++ + M W ++PL+QI
Sbjct: 1964 IDLAKDQEVIVSKALNLLSACVDI-LASEGHMNAMNAMEMSQMVVQAMWDRDSPLKQI 2020
Score = 152 (58.6 bits), Expect = 5.4e-21, Sum P(3) = 5.4e-21
Identities = 33/112 (29%), Positives = 55/112 (49%)
Query: 150 TEHMT--KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLS 207
T H+ GT+ + + Y+ I ++LQ+FG+A RP + G ++ P K +Y
Sbjct: 1714 TGHLVVVMGTQFFEGREHRYIDYPISEILQMFGKASRPGQDKVGRGVLMVPTVKREYYKK 1773
Query: 208 LLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADN 259
L +P+ES+ + D E++ GTI + ++V WL Y F L N
Sbjct: 1774 FLNEALPVESHLQLYMHDAFVTEISQGTIASTQDSVDWLT-YTYFYRRLLAN 1824
Score = 141 (54.7 bits), Expect = 4.5e-172, Sum P(3) = 4.5e-172
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 43 FKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQI-KQHISQGTEM 99
F K LNRIQ+ Y +A+ + N+L+CAPTG+GKTNVAML+I ++ K SQ E+
Sbjct: 527 FGDAKELNRIQTKCYPSAFQDDGNMLVCAPTGSGKTNVAMLSILREVGKNRNSQTGEI 584
Score = 138 (53.6 bits), Expect = 9.4e-172, Sum P(3) = 9.4e-172
Identities = 24/40 (60%), Positives = 36/40 (90%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQ 40
+ + T+LV+L+IIDE+HLLH +RGPVIE++V+RT+RQ+ Q
Sbjct: 655 ETSYTKLVRLIIIDEIHLLHDERGPVIESIVSRTIRQVEQ 694
Score = 112 (44.5 bits), Expect = 8.8e-157, Sum P(3) = 8.8e-157
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+L+C T A N+ AH + I +GT++Y+ + G +V + DVLQ+ GRAGRPQ
Sbjct: 863 VLVCTATLAWGVNLP----AHTV---IIKGTQVYSPEKGSWVELSPQDVLQMLGRAGRPQ 915
Query: 127 YNT 129
Y+T
Sbjct: 916 YDT 918
Score = 91 (37.1 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 18 LLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGK 77
LL R PV +AL R Q ++ + N+IQ+ + T + +++N+ I APTG+GK
Sbjct: 1358 LLDMQRAPV-KALK----RDEYQRLYPDWEYFNKIQTQTFKTLFESDDNVFIGAPTGSGK 1412
Query: 78 TNVAMLTIA-HQIKQHISQGTEMYNA 102
T A L I H K+ G +Y A
Sbjct: 1413 TVCAELAILRHWAKE--DSGRAVYVA 1436
Score = 82 (33.9 bits), Expect = 8.1e-29, Sum P(4) = 8.1e-29
Identities = 34/126 (26%), Positives = 61/126 (48%)
Query: 121 RAGRPQYNTSDLGRTASNYYIKHNDIELFTEHMTKGT---EMYN--AKHGCYVHIGI--- 172
+ GR Q +++LGR AS+YYI HN + + +H+ E++ A + +I +
Sbjct: 1029 KTGRLQ--STELGRIASHYYIGHNSMLTYNQHLQPSIGNIELFRIFALSDEFKYIPVRQD 1086
Query: 173 --LDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAE 230
L++ ++ GR P G I PH K+N L +++ +E +A +AD +
Sbjct: 1087 EKLELAKMLGRVPVPV--KEG---IDEPHAKINVLLQAYISRLKLEG--LALMADLVYVT 1139
Query: 231 VALGTI 236
+ G I
Sbjct: 1140 QSAGRI 1145
Score = 68 (29.0 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 27/118 (22%), Positives = 54/118 (45%)
Query: 14 DEVHLLHGDRGPVIEALVARTL-RQIGQEVFKGV----KSLNRIQSLVYDTAYHTNE-NL 67
DE LH D ++ L+ R R + + + G+ ++L++ + Y+ +
Sbjct: 1642 DEDRFLHADIEE-LQPLLGRVHERTLAESLSHGIGYYHEALSQTDKRIVSHLYNIGAIQV 1700
Query: 68 LICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRP 125
+I + + N LT H + + GT+ + + Y+ I ++LQ+FG+A RP
Sbjct: 1701 VIASRDVCWELN---LT-GHLV---VVMGTQFFEGREHRYIDYPISEILQMFGKASRP 1751
Score = 61 (26.5 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVK 47
V+L + DE+H+L G G V E +V+R + I + G++
Sbjct: 1505 VELFVADELHMLGGYGGYVYEVVVSR-MHSIALQTESGMR 1543
>POMBASE|SPAC9.03c [details] [associations]
symbol:brr2 "U5 snRNP complex subunit Brr2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000393 "spliceosomal
conformational changes to generate catalytic conformation"
evidence=IGI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 PomBase:SPAC9.03c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681
GO:GO:0005682 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749 PIR:T39188
RefSeq:NP_593346.1 ProteinModelPortal:Q9UT24 IntAct:Q9UT24
STRING:Q9UT24 EnsemblFungi:SPAC9.03c.1 GeneID:2543676
KEGG:spo:SPAC9.03c KO:K12854 OMA:KWDVLSR OrthoDB:EOG4MD17F
NextBio:20804682 GO:GO:0046540 GO:GO:0004004 GO:GO:0000393
Uniprot:Q9UT24
Length = 2176
Score = 1243 (442.6 bits), Expect = 4.2e-165, Sum P(3) = 4.2e-165
Identities = 265/740 (35%), Positives = 427/740 (57%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATD 305
L I F+ LAD LNAEV+LGT+ +I++ V WL Y+YL+VRM +P Y + E D
Sbjct: 926 LPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWLGYTYLYVRMLRSPALYSVG-PEYDDD 984
Query: 306 PDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMT 365
L+Q R L+ +AA +L+K ++ +N ++ L T+LG+ A++YY+ HN + ++ +
Sbjct: 985 KYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLTATELGKVAASYYVTHNSMAIYNRLLM 1044
Query: 366 KVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQT 425
+ + + + S + EF+ + VR+EE EL L + IPIR + K+N LLQ+
Sbjct: 1045 QTTSFIELFRVFSFSDEFKHIPVREEEKVELAKLLERV-PIPIRERLDEPAAKINALLQS 1103
Query: 426 LLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPH 485
+SR R++ F+LV+D+ YV Q+ RI+RA+FEI+L R + +A L M E + WP
Sbjct: 1104 YISRQRLDGFALVADMVYVTQSAGRIMRAIFEISLRRGWSSVATLSLDTCKMIEKRLWPT 1163
Query: 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVK 545
+PLRQ P +++ ++E++ + ++ E+ ++ P G +V
Sbjct: 1164 MSPLRQF----------PNCPSEVIRRVEKKEFPWQRYFDLDPAELGELVGVPKEGRRVY 1213
Query: 546 QCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIY 605
P L +E+ + PITR+++++ L I + F+W+D T +E FWI VED D D +
Sbjct: 1214 NMVQSFPRLSVEAHVQPITRSLVRVELVINSQFNWDDHLSGT-SEAFWILVEDVDGDRLL 1272
Query: 606 HSEYFLLSKKQVITKSEESLI-MTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIV 664
H E F L KK K +E ++ T+PL +PLP Y I+ +SDR+L S+ + +SF+ LI+
Sbjct: 1273 HYEQFFLLKKY---KDDEHIVNFTVPLLEPLPPCYFIKIVSDRWLHSITKVPLSFQRLIM 1329
Query: 665 PELHPPHTNLLELQPLPVSALQQPQYESLY-KFSHFNPIQTQIFHCLYHTDNNVLLGAPT 723
PE P T LL+LQ PVS+L P + SLY F FN IQTQ+F+ +Y T+++V +GAP
Sbjct: 1330 PEKFPAPTPLLDLQNAPVSSLNNPSFISLYPNFKFFNKIQTQVFNSVYKTNDSVFIGAPN 1389
Query: 724 GSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKV-VELTGD 782
GSGKT+ AE+ + Q VYIAP++ +V R +W KF KV V+LTG+
Sbjct: 1390 GSGKTVCAELALLHHWSQEDYGTAVYIAPIQEIVDRRYEEWYGKFSDLGDGKVLVKLTGE 1449
Query: 783 VTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIV 842
+ D++ I A +I TP +WD +S+ W++ +Q V I DE+ LLG GP+ E+++
Sbjct: 1450 RSQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLLGGFYGPLYEIVI 1509
Query: 843 SRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFP 902
SR+ +++ ++N+R+VGLS ++ANA+DL WL + Q ++NF P RP PL +H+ F
Sbjct: 1510 SRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTIHLQSFS 1569
Query: 903 GKQYCPRMAKMNKPIYTAIKQH-SPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWV 961
+ M M+KPIY ++K S K ++F R+ + A DL+T + + ++
Sbjct: 1570 ITHFPSLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMADEDEYLFS 1629
Query: 962 HTSDAEMDNIVDNIKDSNLK 981
+ + + D +LK
Sbjct: 1630 LMENEAFNKVEDAALQQSLK 1649
Score = 465 (168.7 bits), Expect = 6.7e-38, Sum P(3) = 6.7e-38
Identities = 123/334 (36%), Positives = 177/334 (52%)
Query: 666 ELHPPHTNLLEL----QPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGA 721
E+H P N L + + + L + +++ N IQ+ ++ + TD N+LL A
Sbjct: 483 EIHVPAPNKAVLGADERLVKIKELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENILLCA 542
Query: 722 PTGSGKTIAAEITCFRVFKQ---------CPEAKVVYIAPLKALVKERVADWKVKFEARL 772
PTG+GKT A + ++ K+VYIAPLKALV+E V ++ +
Sbjct: 543 PTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLTP-Y 601
Query: 773 KKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832
+V ELTGD Q IS +IVTTPEKWD ++R + +YV V L+IIDE+HLL +
Sbjct: 602 NIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLLHD 661
Query: 833 DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNIT-KQGMYNFRPSVRP 891
+RGPVLE IV+R+ T VRLVGLS L N D+A++L++ K+G++ F + RP
Sbjct: 662 ERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRP 721
Query: 892 VPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITIL 951
PL+ G K RM N+ Y + QH+ + V+IFV SR++T TA I
Sbjct: 722 CPLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTA-RFIRDK 780
Query: 952 ACETNPKMWVHTSDAEMDNIV----DNIKDSNLK 981
A E + SDA I+ D+ D NLK
Sbjct: 781 ALEEETIGHLLRSDAASREILRAEADSTSDENLK 814
Score = 258 (95.9 bits), Expect = 4.2e-165, Sum P(3) = 4.2e-165
Identities = 48/92 (52%), Positives = 67/92 (72%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y+ + G + + DVLQ+ GRAGRPQ++T G IIT H +L +YLSL+ Q+P
Sbjct: 868 KGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMNQQLP 927
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
IES F+ LAD LNAEV+LGT+ +I++ V WL
Sbjct: 928 IESQFMRRLADCLNAEVSLGTVRSIEDGVDWL 959
Score = 197 (74.4 bits), Expect = 4.2e-45, Sum P(3) = 4.2e-45
Identities = 61/240 (25%), Positives = 114/240 (47%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L D +E++ TI + +AV WL++SY++ R+ NP YG+ ++ T + + + L
Sbjct: 1767 LHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPAYYGLQ--DI-THESVSEFLSDL 1823
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILS 375
+E L +A +I + +L AS+Y I + ++ F +++ G+L
Sbjct: 1824 VETTMNDLSEARLITVDDEDDSCVALNLAMIASHYGITYITMQTFALSLSERTKMKGLLE 1883
Query: 376 MISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENV---HGKVNILLQTLLSRGRV 432
+++ A E+EQL +R E L+ + +P+R + N H K ILL SR +
Sbjct: 1884 IVTSAAEYEQLPIRKYEDIVLERIHSR---LPVRLSNPNYEDPHTKSFILLAAHFSRFEL 1940
Query: 433 NSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQI 492
LV D +++ V ++ A + + I R ++ + M W ++PL+QI
Sbjct: 1941 PP-GLVIDQKFILTRVHNLLGACVDTLSSEGHLIACIRPMEMSQMVTQALWDRDSPLKQI 1999
Score = 176 (67.0 bits), Expect = 4.2e-165, Sum P(3) = 4.2e-165
Identities = 39/90 (43%), Positives = 59/90 (65%)
Query: 28 EALVA-RTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIA 86
E LV + L + + F +SLNRIQS +Y A+ T+EN+L+CAPTGAGKTNVAML I
Sbjct: 498 ERLVKIKELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCIL 557
Query: 87 HQIKQHISQGTEMYNAKHGCYVHIGILDVL 116
+++++H+ + +N ++ V+I L L
Sbjct: 558 NELQKHLREDLS-FNLQNFKIVYIAPLKAL 586
Score = 120 (47.3 bits), Expect = 3.3e-159, Sum P(3) = 3.3e-159
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVK 47
D++ LV+L+IIDEVHLLH +RGPV+E++VAR R +E + V+
Sbjct: 641 DLSYVNLVRLVIIDEVHLLHDERGPVLESIVARIFRH-QEETLEQVR 686
Score = 108 (43.1 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 42 VFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYN 101
++ K N+IQ+ V+++ Y TN+++ I AP G+GKT A L + H Q GT +Y
Sbjct: 1358 LYPNFKFFNKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCAELALLHHWSQE-DYGTAVYI 1416
Query: 102 A 102
A
Sbjct: 1417 A 1417
Score = 107 (42.7 bits), Expect = 7.7e-15, Sum P(3) = 7.7e-15
Identities = 30/105 (28%), Positives = 49/105 (46%)
Query: 156 GTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPI 215
GT+ Y+ K Y+ I ++LQ+ G + ++T K +Y L +P+
Sbjct: 1700 GTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKFLNEPLPM 1759
Query: 216 ESNFVANLADNLNAEVALGTIGNIDEAVRWLI---IYINFVANLA 257
ES+ L D +E++ TI + +AV WL +Y VAN A
Sbjct: 1760 ESHLQVWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPA 1804
Score = 99 (39.9 bits), Expect = 1.9e-142, Sum P(3) = 1.9e-142
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 86 AHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGR--TASN---YY 140
AH + I +GT++Y+ + G + + DVLQ+ GRAGRPQ++T G TA + YY
Sbjct: 862 AHTV---IIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYY 918
Query: 141 IK--HNDIELFTEHMTKGTEMYNAK 163
+ + + + ++ M + + NA+
Sbjct: 919 LSLMNQQLPIESQFMRRLADCLNAE 943
Score = 58 (25.5 bits), Expect = 3.8e-24, Sum P(3) = 3.8e-24
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 130 SDLGRTASNYYIKHNDIELFTEHMTKGT 157
++LG+ A++YY+ HN + ++ + + T
Sbjct: 1020 TELGKVAASYYVTHNSMAIYNRLLMQTT 1047
Score = 57 (25.1 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVK 47
V I DE+ LL G GP+ E +++R +R + ++ K ++
Sbjct: 1486 VDFYICDELQLLGGFYGPLYEIVISR-IRYMAVQLEKNIR 1524
Score = 52 (23.4 bits), Expect = 9.1e-18, Sum P(3) = 9.1e-18
Identities = 23/91 (25%), Positives = 39/91 (42%)
Query: 41 EVFKGVKSLNRIQSLVYDTAY-----HTNENLLI--CAPTGAGKTNVAMLTIAHQIKQH- 92
E F V+ QSL + AY +N+ ++ G K +A + + +K
Sbjct: 1634 EAFNKVEDAALQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKS 1693
Query: 93 ---ISQGTEMYNAKHGCYVHIGILDVLQIFG 120
I GT+ Y+ K Y+ I ++LQ+ G
Sbjct: 1694 NAVIVMGTQYYDGKEHRYIDYPISELLQMLG 1724
Score = 45 (20.9 bits), Expect = 6.7e-38, Sum P(3) = 6.7e-38
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 357 IELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIP 407
+E E +DV + + ISQ E + ++ D E+ + T++ EIP
Sbjct: 244 VEAMEEDEVAEDEDVVLETSISQEEEKKNIENPDTEVTFISADTKKVTEIP 294
Score = 43 (20.2 bits), Expect = 6.7e-38, Sum P(3) = 6.7e-38
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 617 VITKSEESLIMTIPLSDPLPNQYLI---RAMSDRYLGSVVQHSMSFKHLIVPE 666
V+ K+E + + IPLS L + ++ + + Y+ + MS K + +PE
Sbjct: 419 VVEKAEPAPVSEIPLSKTLTSHKIVPKHQVDLENYVFTEGSRLMSNKAVKLPE 471
>GENEDB_PFALCIPARUM|PF14_0370 [details] [associations]
symbol:PF14_0370 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0004004 KO:K01509
RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 860 (307.8 bits), Expect = 1.4e-127, Sum P(3) = 1.4e-127
Identities = 181/489 (37%), Positives = 293/489 (59%)
Query: 497 NRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEI 556
N+ Y + LK +N +E++ LT E + + KE+ + +R+ +++ IP L+I
Sbjct: 1172 NQNY-TVYLKEAAVNILEKKNLTYESIEHLSKKELLFFMRNEIYTNQILYYRNIIPNLDI 1230
Query: 557 ESKLLPITRTVLKIHLTIK-ANFSWNDKNKSTYAEPFWIWVEDP-DSDFIYHSEYFLLSK 614
+ + PIT+T++KI+L +K N W+D+ + E F I++ + ++D +Y + F + K
Sbjct: 1231 DGYIQPITQTIMKINLNVKLTNTIWSDQ-WNDIIENFHIFLLNTLNNDILYFQK-FSIHK 1288
Query: 615 KQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNL 674
K K + PLS+ +P Q ++ +S + H + +L + + + +
Sbjct: 1289 KD--RKKIHDISFEFPLSNQIPPQITVQFLSMNWCNLSFVHIFNTNNLFINQKINVFSEI 1346
Query: 675 LELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEIT 734
L L PL + L P Y + F +FNPIQTQ+FH +HTD N+LLGAPTGSGKT+ E+
Sbjct: 1347 LPLTPLSTNVLNIPNYIKFFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGKTVIGELC 1406
Query: 735 CFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSAS 794
R +C K VYI P+KA+V ER WK KF++ K V+ELTGD + + I+ ++
Sbjct: 1407 ILRNLLRCEGQKSVYICPMKAIVNERYKSWKSKFKSLFNKNVIELTGDKNENKENIAESN 1466
Query: 795 VIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG-EDRGPVLEVIVSRVNFISSYTK 853
+I+ TPEK D ++R+W+N+ +V+++ LII DEIHLLG E+RG V+E++V+R + +
Sbjct: 1467 IIICTPEKLDVITRNWKNKKFVKNINLIIFDEIHLLGQENRGGVIEILVNRFKNMQNELN 1526
Query: 854 RNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKM 913
+ +RL+GL+T + + DL WL++ + ++NF S R VP + HI GF K YC RM+ M
Sbjct: 1527 KKIRLIGLTTVITSVDDLILWLDVKENYLFNFPSSCRIVPCKTHILGFTQKAYCNRMSVM 1586
Query: 914 NKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMD-NIV 972
NK ++ AI Q++ K V+IFVSSRRQTRLTA D+I++ N ++H + D N +
Sbjct: 1587 NKNVFDAINQYAQTKNVLIFVSSRRQTRLTAYDIISLNLSSHNLN-FLHVENLLNDKNHI 1645
Query: 973 DNIKDSNLK 981
D + ++ K
Sbjct: 1646 DFLLNTQKK 1654
Score = 340 (124.7 bits), Expect = 1.4e-127, Sum P(3) = 1.4e-127
Identities = 76/235 (32%), Positives = 142/235 (60%)
Query: 247 IIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDP 306
+I NF+ N+ ++LNAE+++GTI NI++ ++WL Y+YL +RM+ NP Y + ++ D
Sbjct: 862 VIESNFLKNIENHLNAEISIGTIKNIEDGIKWLEYTYLFIRMKKNPYLYDV---DINNDL 918
Query: 307 DLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTK 366
+L R +I A Q L + ++R + T D T G+ A+ YY+ + I +F E++
Sbjct: 919 NLYNKRKDIIMKAIQNLSENKLVRRVLLTNDFIGTFYGQIAAKYYVDYKTIGMFAENVQN 978
Query: 367 VLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTL 426
+ + I+ +IS+A EFE +++R+E++ + L +C +I E+ + + IL++
Sbjct: 979 N-NYIEIIQVISKAKEFENIQIRNEDMKDFLYLKDKC-DIK-EEYDESKNMTLRILIEVY 1035
Query: 427 LSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLH--RN--NAIMAARFLKFALM 477
L R ++N+FS++ ++ Y+ QN+IRI+ A ++I L+ +N N IM L A++
Sbjct: 1036 LRRLQINNFSIICEINYIVQNIIRILYAYYDICLNILKNISNLIMNTHNLIVAIL 1090
Score = 256 (95.2 bits), Expect = 9.5e-119, Sum P(3) = 9.5e-119
Identities = 61/157 (38%), Positives = 95/157 (60%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT ++++ G + ILD+ QIFGR GRPQY + GHA +IT KL Y+ LLTN
Sbjct: 803 KGTNYFSSESGKLEDMDILDINQIFGRCGRPQYESHGHAILITERTKLYKYIKLLTNNTV 862
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN--LAD-NLNAEVALGT 268
IESNF+ N+ ++LNAE+++GTI NI++ ++WL ++I N L D ++N ++ L
Sbjct: 863 IESNFLKNIENHLNAEISIGTIKNIEDGIKWLEYTYLFIRMKKNPYLYDVDINNDLNLYN 922
Query: 269 IGN--IDEAVRWLSYSYLHVRMRINPREYGISYDEVA 303
I +A++ LS + L R+ + G Y ++A
Sbjct: 923 KRKDIIMKAIQNLSENKLVRRVLLTNDFIGTFYGQIA 959
Score = 232 (86.7 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 75/248 (30%), Positives = 122/248 (49%)
Query: 744 EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKW 803
E K++YIAP+K+LV E ++ K + V E T + + + + +IVT PEK
Sbjct: 504 EFKIIYIAPMKSLVFEITNLFRKKLKI-FNLNVCEYTKEYSLSSKELEQVHIIVTVPEKL 562
Query: 804 D------GVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFIS-SYTKRNV 856
D S + + + ++ + +I+DE+HLL DRG V+E IVSR F+ S T +++
Sbjct: 563 DILLRNSSYSTTVSDESLIKYIKCLILDEVHLLNTDRGDVIETIVSR--FLQYSETSQSI 620
Query: 857 R-LVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNK 915
R ++ +S L N KD+ +L + Y F R + L+ + G + + K
Sbjct: 621 RRIMAMSATLPNYKDVRDFLKVENDMCYYFNEKYRSIQLDKTLYGIHEENN--NKLYIAK 678
Query: 916 PIYT---AIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDN-I 971
IYT I +K +IFV SR +T T I+ + A + N ++ ++ DN I
Sbjct: 679 NIYTYNEIINSLKKDKQCIIFVCSRNETNKT-IEFLINHALKNN-EIEYFVNNVYTDNDI 736
Query: 972 VDNIKDSN 979
IK SN
Sbjct: 737 KKKIKKSN 744
Score = 154 (59.3 bits), Expect = 4.4e-17, Sum P(5) = 4.4e-17
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KG E Y+AK Y I D+LQ+ GRAGRPQ++ A ++ ++ N + L + +
Sbjct: 1862 KGNEFYDAKTKKYKDIPYTDLLQMIGRAGRPQFDDKALAILLVQEKRKNAIKNFLYHPMN 1921
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
IESN + N +++NAE+ I N ++ +L
Sbjct: 1922 IESNIMENFNEHINAEICSNVINNKEDIFNYL 1953
Score = 133 (51.9 bits), Expect = 1.4e-127, Sum P(3) = 1.4e-127
Identities = 23/40 (57%), Positives = 33/40 (82%)
Query: 50 NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQI 89
N +QS V+++A+ +N+NLL+CAPTG GKTN+A+L I QI
Sbjct: 341 NYVQSKVFNSAFRSNKNLLVCAPTGCGKTNIALLVILQQI 380
Score = 99 (39.9 bits), Expect = 5.2e-124, Sum P(3) = 5.2e-124
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLR 36
D +L + +K LI+DEVHLL+ DRG VIE +V+R L+
Sbjct: 577 DESLIKYIKCLILDEVHLLNTDRGDVIETIVSRFLQ 612
Score = 99 (39.9 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 690 YESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKT-IAAEITCFRVFKQCPEAKV 747
++ ++ F +FN +Q+++F+ + ++ N+L+ APTG GKT IA + ++ C + K+
Sbjct: 331 HKYIFDFEYFNYVQSKVFNSAFRSNKNLLVCAPTGCGKTNIALLVILQQIILFCEQNKI 389
Score = 98 (39.6 bits), Expect = 4.4e-17, Sum P(5) = 4.4e-17
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 43 FKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQI 89
F K N IQ+ ++ +HT+EN+L+ APTG+GKT + L I +
Sbjct: 1365 FFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGKTVIGELCILRNL 1411
Score = 96 (38.9 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 40/162 (24%), Positives = 69/162 (42%)
Query: 251 NFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREY--GISY------DEV 302
N + N +++NAE+ I N ++ +L+ SY R+ NP Y + Y ++
Sbjct: 1925 NIMENFNEHINAEICSNVINNKEDIFNYLTKSYYFKRLFSNPSYYIKEVQYVQFFENSKL 1984
Query: 303 ATDPDLI--QHRTTLIENAAQIL--DKA-HMIRFNMRTRDLAITDLGRTASNYYIKHNDI 357
+T I H +IEN + L +K +++ N A T LG AS YYIK +
Sbjct: 1985 STHAKKIIYDHLNDVIENGIKFLVQNKCLEVVQENYVLNYYA-TPLGHIASMYYIKCETV 2043
Query: 358 ELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNL 399
F T + G + + K+ D + +D++
Sbjct: 2044 YFF---YTSI--QAGKKHKNDKMNNMNSTKIDDNTMDHVDSI 2080
Score = 91 (37.1 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+LIC T A N+ + I +G E Y+AK Y I D+LQ+ GRAGRPQ
Sbjct: 1841 ILICTSTLAWGINLPAYLV-------IIKGNEFYDAKTKKYKDIPYTDLLQMIGRAGRPQ 1893
Query: 127 YNTSDL 132
++ L
Sbjct: 1894 FDDKAL 1899
Score = 69 (29.3 bits), Expect = 6.1e-27, Sum P(3) = 6.1e-27
Identities = 37/146 (25%), Positives = 61/146 (41%)
Query: 368 LDDVGILSMISQAHEFEQLKVR-DEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTL 426
L+ I ++ QA EF+ + +R +E+ + + Q +I + NV K +LL +
Sbjct: 2147 LEFYDIFELVVQAKEFDDIPLRHNEDKYNVKLRNQIPLDIDMN--MPNV--KTYLLLLSR 2202
Query: 427 LSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHE 486
+ DL+ V + R+I A +I L +N + + K P+
Sbjct: 2203 FYECTYETVDYHIDLKLVMDQIARVINAFIDICLLFHNYNYIKKLILIFNCINQKVKPNT 2262
Query: 487 TPLRQIKLVTNRGYQSPILKP-DILN 511
L IK +T YQ LK DI N
Sbjct: 2263 NSLYIIKDITE--YQIYKLKQLDIYN 2286
Score = 68 (29.0 bits), Expect = 8.4e-09, Sum P(4) = 8.4e-09
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 8 VKLLIIDEVHLL-HGDRGPVIEALVARTLRQIGQEVFKGVK 47
+ L+I DE+HLL +RG VIE LV R + + E+ K ++
Sbjct: 1491 INLIIFDEIHLLGQENRGGVIEILVNR-FKNMQNELNKKIR 1530
Score = 52 (23.4 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAK 163
Y + LG AS YYIK + F + G + N K
Sbjct: 2024 YYATPLGHIASMYYIKCETVYFFYTSIQAGKKHKNDK 2060
Score = 49 (22.3 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 213 IPIESNFVANLADNLNAEVAL-G---TIGNIDEAVRWLIIYINFVAN 255
I I N N+ + LN ++ L G I ++D+ + WL + N++ N
Sbjct: 1511 IEILVNRFKNMQNELNKKIRLIGLTTVITSVDDLILWLDVKENYLFN 1557
Score = 45 (20.9 bits), Expect = 1.5e-96, Sum P(3) = 1.5e-96
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 133 GRTASNYYIKHNDIELFTEHM 153
G+ A+ YY+ + I +F E++
Sbjct: 956 GQIAAKYYVDYKTIGMFAENV 976
Score = 45 (20.9 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 580 WNDKNKSTYAEPFWIWVEDPDSD---FIYHSEYFLLSKKQVIT 619
WND Y + + E+ + ++Y++ Y +LS K IT
Sbjct: 90 WNDNILKEYVDGKVLENEENEESGLMYVYNTCYNILSSKNEIT 132
Score = 41 (19.5 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 339 AITDLGRTASNY-YIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELD 397
A D+ NY YIK I +F KV + L +I E++ K++ +++ ++
Sbjct: 2230 AFIDICLLFHNYNYIKKL-ILIFNCINQKVKPNTNSLYIIKDITEYQIYKLKQLDIYNIN 2288
Query: 398 NL 399
L
Sbjct: 2289 QL 2290
Score = 40 (19.1 bits), Expect = 4.4e-17, Sum P(5) = 4.4e-17
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 126 QYNTSDLGRTASNYY 140
QYN D + +NYY
Sbjct: 1747 QYNNEDDNKIHNNYY 1761
Score = 38 (18.4 bits), Expect = 8.1e-96, Sum P(3) = 8.1e-96
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 349 NYYIKHNDIELFTEHM 364
N+ +K+N+IE F ++
Sbjct: 715 NHALKNNEIEYFVNNV 730
Score = 38 (18.4 bits), Expect = 1.9e-06, Sum P(5) = 1.9e-06
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 271 NIDEAVRWLSYSYLHVRMRINPREYGISYDEVA 303
NI E + ++ Y +M IN ++ SY+ ++
Sbjct: 1671 NIAENIN--TFEYTEYKMNINRKDNIASYNNMS 1701
>UNIPROTKB|Q8IL78 [details] [associations]
symbol:PF14_0370 "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0004004
KO:K01509 RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 860 (307.8 bits), Expect = 1.4e-127, Sum P(3) = 1.4e-127
Identities = 181/489 (37%), Positives = 293/489 (59%)
Query: 497 NRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEI 556
N+ Y + LK +N +E++ LT E + + KE+ + +R+ +++ IP L+I
Sbjct: 1172 NQNY-TVYLKEAAVNILEKKNLTYESIEHLSKKELLFFMRNEIYTNQILYYRNIIPNLDI 1230
Query: 557 ESKLLPITRTVLKIHLTIK-ANFSWNDKNKSTYAEPFWIWVEDP-DSDFIYHSEYFLLSK 614
+ + PIT+T++KI+L +K N W+D+ + E F I++ + ++D +Y + F + K
Sbjct: 1231 DGYIQPITQTIMKINLNVKLTNTIWSDQ-WNDIIENFHIFLLNTLNNDILYFQK-FSIHK 1288
Query: 615 KQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNL 674
K K + PLS+ +P Q ++ +S + H + +L + + + +
Sbjct: 1289 KD--RKKIHDISFEFPLSNQIPPQITVQFLSMNWCNLSFVHIFNTNNLFINQKINVFSEI 1346
Query: 675 LELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEIT 734
L L PL + L P Y + F +FNPIQTQ+FH +HTD N+LLGAPTGSGKT+ E+
Sbjct: 1347 LPLTPLSTNVLNIPNYIKFFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGKTVIGELC 1406
Query: 735 CFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSAS 794
R +C K VYI P+KA+V ER WK KF++ K V+ELTGD + + I+ ++
Sbjct: 1407 ILRNLLRCEGQKSVYICPMKAIVNERYKSWKSKFKSLFNKNVIELTGDKNENKENIAESN 1466
Query: 795 VIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG-EDRGPVLEVIVSRVNFISSYTK 853
+I+ TPEK D ++R+W+N+ +V+++ LII DEIHLLG E+RG V+E++V+R + +
Sbjct: 1467 IIICTPEKLDVITRNWKNKKFVKNINLIIFDEIHLLGQENRGGVIEILVNRFKNMQNELN 1526
Query: 854 RNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKM 913
+ +RL+GL+T + + DL WL++ + ++NF S R VP + HI GF K YC RM+ M
Sbjct: 1527 KKIRLIGLTTVITSVDDLILWLDVKENYLFNFPSSCRIVPCKTHILGFTQKAYCNRMSVM 1586
Query: 914 NKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMD-NIV 972
NK ++ AI Q++ K V+IFVSSRRQTRLTA D+I++ N ++H + D N +
Sbjct: 1587 NKNVFDAINQYAQTKNVLIFVSSRRQTRLTAYDIISLNLSSHNLN-FLHVENLLNDKNHI 1645
Query: 973 DNIKDSNLK 981
D + ++ K
Sbjct: 1646 DFLLNTQKK 1654
Score = 340 (124.7 bits), Expect = 1.4e-127, Sum P(3) = 1.4e-127
Identities = 76/235 (32%), Positives = 142/235 (60%)
Query: 247 IIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDP 306
+I NF+ N+ ++LNAE+++GTI NI++ ++WL Y+YL +RM+ NP Y + ++ D
Sbjct: 862 VIESNFLKNIENHLNAEISIGTIKNIEDGIKWLEYTYLFIRMKKNPYLYDV---DINNDL 918
Query: 307 DLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTK 366
+L R +I A Q L + ++R + T D T G+ A+ YY+ + I +F E++
Sbjct: 919 NLYNKRKDIIMKAIQNLSENKLVRRVLLTNDFIGTFYGQIAAKYYVDYKTIGMFAENVQN 978
Query: 367 VLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTL 426
+ + I+ +IS+A EFE +++R+E++ + L +C +I E+ + + IL++
Sbjct: 979 N-NYIEIIQVISKAKEFENIQIRNEDMKDFLYLKDKC-DIK-EEYDESKNMTLRILIEVY 1035
Query: 427 LSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLH--RN--NAIMAARFLKFALM 477
L R ++N+FS++ ++ Y+ QN+IRI+ A ++I L+ +N N IM L A++
Sbjct: 1036 LRRLQINNFSIICEINYIVQNIIRILYAYYDICLNILKNISNLIMNTHNLIVAIL 1090
Score = 256 (95.2 bits), Expect = 9.5e-119, Sum P(3) = 9.5e-119
Identities = 61/157 (38%), Positives = 95/157 (60%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT ++++ G + ILD+ QIFGR GRPQY + GHA +IT KL Y+ LLTN
Sbjct: 803 KGTNYFSSESGKLEDMDILDINQIFGRCGRPQYESHGHAILITERTKLYKYIKLLTNNTV 862
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN--LAD-NLNAEVALGT 268
IESNF+ N+ ++LNAE+++GTI NI++ ++WL ++I N L D ++N ++ L
Sbjct: 863 IESNFLKNIENHLNAEISIGTIKNIEDGIKWLEYTYLFIRMKKNPYLYDVDINNDLNLYN 922
Query: 269 IGN--IDEAVRWLSYSYLHVRMRINPREYGISYDEVA 303
I +A++ LS + L R+ + G Y ++A
Sbjct: 923 KRKDIIMKAIQNLSENKLVRRVLLTNDFIGTFYGQIA 959
Score = 232 (86.7 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 75/248 (30%), Positives = 122/248 (49%)
Query: 744 EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKW 803
E K++YIAP+K+LV E ++ K + V E T + + + + +IVT PEK
Sbjct: 504 EFKIIYIAPMKSLVFEITNLFRKKLKI-FNLNVCEYTKEYSLSSKELEQVHIIVTVPEKL 562
Query: 804 D------GVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFIS-SYTKRNV 856
D S + + + ++ + +I+DE+HLL DRG V+E IVSR F+ S T +++
Sbjct: 563 DILLRNSSYSTTVSDESLIKYIKCLILDEVHLLNTDRGDVIETIVSR--FLQYSETSQSI 620
Query: 857 R-LVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNK 915
R ++ +S L N KD+ +L + Y F R + L+ + G + + K
Sbjct: 621 RRIMAMSATLPNYKDVRDFLKVENDMCYYFNEKYRSIQLDKTLYGIHEENN--NKLYIAK 678
Query: 916 PIYT---AIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDN-I 971
IYT I +K +IFV SR +T T I+ + A + N ++ ++ DN I
Sbjct: 679 NIYTYNEIINSLKKDKQCIIFVCSRNETNKT-IEFLINHALKNN-EIEYFVNNVYTDNDI 736
Query: 972 VDNIKDSN 979
IK SN
Sbjct: 737 KKKIKKSN 744
Score = 154 (59.3 bits), Expect = 4.4e-17, Sum P(5) = 4.4e-17
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KG E Y+AK Y I D+LQ+ GRAGRPQ++ A ++ ++ N + L + +
Sbjct: 1862 KGNEFYDAKTKKYKDIPYTDLLQMIGRAGRPQFDDKALAILLVQEKRKNAIKNFLYHPMN 1921
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
IESN + N +++NAE+ I N ++ +L
Sbjct: 1922 IESNIMENFNEHINAEICSNVINNKEDIFNYL 1953
Score = 133 (51.9 bits), Expect = 1.4e-127, Sum P(3) = 1.4e-127
Identities = 23/40 (57%), Positives = 33/40 (82%)
Query: 50 NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQI 89
N +QS V+++A+ +N+NLL+CAPTG GKTN+A+L I QI
Sbjct: 341 NYVQSKVFNSAFRSNKNLLVCAPTGCGKTNIALLVILQQI 380
Score = 99 (39.9 bits), Expect = 5.2e-124, Sum P(3) = 5.2e-124
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLR 36
D +L + +K LI+DEVHLL+ DRG VIE +V+R L+
Sbjct: 577 DESLIKYIKCLILDEVHLLNTDRGDVIETIVSRFLQ 612
Score = 99 (39.9 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 690 YESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKT-IAAEITCFRVFKQCPEAKV 747
++ ++ F +FN +Q+++F+ + ++ N+L+ APTG GKT IA + ++ C + K+
Sbjct: 331 HKYIFDFEYFNYVQSKVFNSAFRSNKNLLVCAPTGCGKTNIALLVILQQIILFCEQNKI 389
Score = 98 (39.6 bits), Expect = 4.4e-17, Sum P(5) = 4.4e-17
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 43 FKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQI 89
F K N IQ+ ++ +HT+EN+L+ APTG+GKT + L I +
Sbjct: 1365 FFSFKYFNPIQTQMFHATFHTDENILLGAPTGSGKTVIGELCILRNL 1411
Score = 96 (38.9 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 40/162 (24%), Positives = 69/162 (42%)
Query: 251 NFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREY--GISY------DEV 302
N + N +++NAE+ I N ++ +L+ SY R+ NP Y + Y ++
Sbjct: 1925 NIMENFNEHINAEICSNVINNKEDIFNYLTKSYYFKRLFSNPSYYIKEVQYVQFFENSKL 1984
Query: 303 ATDPDLI--QHRTTLIENAAQIL--DKA-HMIRFNMRTRDLAITDLGRTASNYYIKHNDI 357
+T I H +IEN + L +K +++ N A T LG AS YYIK +
Sbjct: 1985 STHAKKIIYDHLNDVIENGIKFLVQNKCLEVVQENYVLNYYA-TPLGHIASMYYIKCETV 2043
Query: 358 ELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNL 399
F T + G + + K+ D + +D++
Sbjct: 2044 YFF---YTSI--QAGKKHKNDKMNNMNSTKIDDNTMDHVDSI 2080
Score = 91 (37.1 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+LIC T A N+ + I +G E Y+AK Y I D+LQ+ GRAGRPQ
Sbjct: 1841 ILICTSTLAWGINLPAYLV-------IIKGNEFYDAKTKKYKDIPYTDLLQMIGRAGRPQ 1893
Query: 127 YNTSDL 132
++ L
Sbjct: 1894 FDDKAL 1899
Score = 69 (29.3 bits), Expect = 6.1e-27, Sum P(3) = 6.1e-27
Identities = 37/146 (25%), Positives = 61/146 (41%)
Query: 368 LDDVGILSMISQAHEFEQLKVR-DEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTL 426
L+ I ++ QA EF+ + +R +E+ + + Q +I + NV K +LL +
Sbjct: 2147 LEFYDIFELVVQAKEFDDIPLRHNEDKYNVKLRNQIPLDIDMN--MPNV--KTYLLLLSR 2202
Query: 427 LSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHE 486
+ DL+ V + R+I A +I L +N + + K P+
Sbjct: 2203 FYECTYETVDYHIDLKLVMDQIARVINAFIDICLLFHNYNYIKKLILIFNCINQKVKPNT 2262
Query: 487 TPLRQIKLVTNRGYQSPILKP-DILN 511
L IK +T YQ LK DI N
Sbjct: 2263 NSLYIIKDITE--YQIYKLKQLDIYN 2286
Score = 68 (29.0 bits), Expect = 8.4e-09, Sum P(4) = 8.4e-09
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 8 VKLLIIDEVHLL-HGDRGPVIEALVARTLRQIGQEVFKGVK 47
+ L+I DE+HLL +RG VIE LV R + + E+ K ++
Sbjct: 1491 INLIIFDEIHLLGQENRGGVIEILVNR-FKNMQNELNKKIR 1530
Score = 52 (23.4 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAK 163
Y + LG AS YYIK + F + G + N K
Sbjct: 2024 YYATPLGHIASMYYIKCETVYFFYTSIQAGKKHKNDK 2060
Score = 49 (22.3 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 213 IPIESNFVANLADNLNAEVAL-G---TIGNIDEAVRWLIIYINFVAN 255
I I N N+ + LN ++ L G I ++D+ + WL + N++ N
Sbjct: 1511 IEILVNRFKNMQNELNKKIRLIGLTTVITSVDDLILWLDVKENYLFN 1557
Score = 45 (20.9 bits), Expect = 1.5e-96, Sum P(3) = 1.5e-96
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 133 GRTASNYYIKHNDIELFTEHM 153
G+ A+ YY+ + I +F E++
Sbjct: 956 GQIAAKYYVDYKTIGMFAENV 976
Score = 45 (20.9 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 580 WNDKNKSTYAEPFWIWVEDPDSD---FIYHSEYFLLSKKQVIT 619
WND Y + + E+ + ++Y++ Y +LS K IT
Sbjct: 90 WNDNILKEYVDGKVLENEENEESGLMYVYNTCYNILSSKNEIT 132
Score = 41 (19.5 bits), Expect = 4.8e-24, Sum P(3) = 4.8e-24
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 339 AITDLGRTASNY-YIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELD 397
A D+ NY YIK I +F KV + L +I E++ K++ +++ ++
Sbjct: 2230 AFIDICLLFHNYNYIKKL-ILIFNCINQKVKPNTNSLYIIKDITEYQIYKLKQLDIYNIN 2288
Query: 398 NL 399
L
Sbjct: 2289 QL 2290
Score = 40 (19.1 bits), Expect = 4.4e-17, Sum P(5) = 4.4e-17
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 126 QYNTSDLGRTASNYY 140
QYN D + +NYY
Sbjct: 1747 QYNNEDDNKIHNNYY 1761
Score = 38 (18.4 bits), Expect = 8.1e-96, Sum P(3) = 8.1e-96
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 349 NYYIKHNDIELFTEHM 364
N+ +K+N+IE F ++
Sbjct: 715 NHALKNNEIEYFVNNV 730
Score = 38 (18.4 bits), Expect = 1.9e-06, Sum P(5) = 1.9e-06
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 271 NIDEAVRWLSYSYLHVRMRINPREYGISYDEVA 303
NI E + ++ Y +M IN ++ SY+ ++
Sbjct: 1671 NIAENIN--TFEYTEYKMNINRKDNIASYNNMS 1701
>UNIPROTKB|F1RYR3 [details] [associations]
symbol:LOC100517018 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00700000104562
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
EMBL:CU104757 Ensembl:ENSSSCT00000004816 Uniprot:F1RYR3
Length = 391
Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
Identities = 231/400 (57%), Positives = 301/400 (75%)
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
++SFSL+SD YV QN RI+RALFEI L + M R L + + + + W +PLRQ
Sbjct: 1 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQ 60
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI 551
+L P IL ++E++ LTV+ L++M EI ++L ++G KVKQC +I
Sbjct: 61 FS----------VLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQI 110
Query: 552 PLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFL 611
P + +E+ + PITRTVL++ L+I +F+WND+ T EP+WIWVEDP +D IYHSEYFL
Sbjct: 111 PSVTMEASIQPITRTVLRVTLSICPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFL 170
Query: 612 LSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPH 671
+ KKQVI+K + L+ TIP+ +PLP+QY IRA+SDR+LG+ ++F+HLI+PE HPPH
Sbjct: 171 VLKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPH 230
Query: 672 TNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAA 731
T LL+LQPLPV+AL YE+LY FSHFNP+QTQIFH LYHTD NVLLGAPTGSGKT+AA
Sbjct: 231 TELLDLQPLPVTALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAA 290
Query: 732 EITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAIS 791
E+ FRVF + P +K VYIAPLKALV+ER+ DWKV+ E +L KKV+ELTGDVTPD+++I+
Sbjct: 291 ELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIA 350
Query: 792 SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831
A +IVTTPEKWDGVSRSWQNRNYV+ V ++IIDEIHLLG
Sbjct: 351 KADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLG 390
>SGD|S000000974 [details] [associations]
symbol:BRR2 "RNA-dependent ATPase RNA helicase (DEIH box)"
species:4932 "Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000388 "spliceosome
conformational change to release U4 (or U4atac) and U1 (or U11)"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 SGD:S000000974
GO:GO:0005524 GO:GO:0005681 GO:GO:0005682 GO:GO:0003676
EMBL:BK006939 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104562 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
EMBL:U18922 KO:K12854 OrthoDB:EOG4MD17F GO:GO:0046540 GO:GO:0004004
PIR:S50675 RefSeq:NP_011099.1 PDB:3HIB PDB:3IM1 PDB:3IM2
PDBsum:3HIB PDBsum:3IM1 PDBsum:3IM2 ProteinModelPortal:P32639
SMR:P32639 DIP:DIP-850N IntAct:P32639 MINT:MINT-606933
STRING:P32639 PaxDb:P32639 EnsemblFungi:YER172C GeneID:856919
KEGG:sce:YER172C CYGD:YER172c OMA:RDTHESS EvolutionaryTrace:P32639
NextBio:983377 Genevestigator:P32639 GermOnline:YER172C
GO:GO:0000388 Uniprot:P32639
Length = 2163
Score = 878 (314.1 bits), Expect = 1.5e-105, Sum P(3) = 1.5e-105
Identities = 208/664 (31%), Positives = 356/664 (53%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATD 305
L I FV+ L DNLNAEV G I ++AV WL+Y+YL+VRM +P Y + ++++D
Sbjct: 906 LPIESQFVSKLVDNLNAEVVAGNIKCRNDAVNWLAYTYLYVRMLASPMLYKVP--DISSD 963
Query: 306 PDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMT 365
L + R +L+ +A IL + ++ ++ + TDLG AS++YI H ++++ +
Sbjct: 964 GQLKKFRESLVHSALCILKEQELVLYDAENDVIEATDLGNIASSFYINHASMDVYNRELD 1023
Query: 366 KVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQT 425
+ + + + S + EF+ + VR EE EL L ++ IPIR ++ KVN+LLQ+
Sbjct: 1024 EHTTQIDLFRIFSMSEEFKYVSVRYEEKRELKQLLEKA-PIPIREDIDDPLAKVNVLLQS 1082
Query: 426 LLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPH 485
S+ + F+L SD+ +++QN R++RA+FEI L R L TK WP
Sbjct: 1083 YFSQLKFEGFALNSDIVFIHQNAGRLLRAMFEICLKRGWGHPTRMLLNLCKSATTKMWPT 1142
Query: 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVED-LR-EMPAKEISYMLRDPHVGDK 543
PLRQ K P+ +++ ++E + D L+ E PA E+ +R G +
Sbjct: 1143 NCPLRQFKTC-------PV---EVIKRLEASTVPWGDYLQLETPA-EVGRAIRSEKYGKQ 1191
Query: 544 VKQCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDF 603
V P + + PITR+V++ ++ I A++ W D N EPF + +ED D D
Sbjct: 1192 VYDLLKRFPKMSVTCNAQPITRSVMRFNIEIIADWIW-DMNVHGSLEPFLLMLEDTDGDS 1250
Query: 604 IYHSEYFLLSKKQVITKSEESLIMTIPLS----DPLPNQYLIRAMSDRYLGSVVQHSMSF 659
I + + ++ I E +L T L + LP + + +S+ + S + +SF
Sbjct: 1251 ILYYDVLFITPD--IVGHEFTLSFTYELKQHNQNNLPPNFFLTLISENWWHSEFEIPVSF 1308
Query: 660 KHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLL 719
+P+ PP T LLE + S L + +++F FN IQ+Q+F LY+++++V +
Sbjct: 1309 NGFKLPKKFPPPTPLLENISISTSELGNDDFSEVFEFKTFNKIQSQVFESLYNSNDSVFV 1368
Query: 720 GAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVEL 779
G+ G+GKT AE+ ++Q + + VYI P + ++DW +F K++
Sbjct: 1369 GSGKGTGKTAMAELALLNHWRQ-NKGRAVYINPSGEKIDFLLSDWNKRFSHLAGGKIINK 1427
Query: 780 TG-DVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED-RGPV 837
G D + +++ ++ + V++ TP +++ +SR W+ R +QS+ L+I D+ H + + G V
Sbjct: 1428 LGNDPSLNLKLLAKSHVLLATPVQFELLSRRWRQRKNIQSLELMIYDDAHEISQGVYGAV 1487
Query: 838 LEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVH 897
E ++SR+ FI++ ++ +R V LS LANA+D W +TK +YNF PS R PLE++
Sbjct: 1488 YETLISRMIFIATQLEKKIRFVCLSNCLANARDFGEWAGMTKSNIYNFSPSERIEPLEIN 1547
Query: 898 ISGF 901
I F
Sbjct: 1548 IQSF 1551
Score = 457 (165.9 bits), Expect = 5.0e-39, P = 5.0e-39
Identities = 114/297 (38%), Positives = 167/297 (56%)
Query: 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--PEAK--------VVY 749
NPIQ+++FH + D+N+L+ APTGSGKT A +T + P+ K +VY
Sbjct: 500 NPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVY 559
Query: 750 IAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS 809
IAPLKALV+E+V +++ + A L KV ELTGD + I V+V+TPEKWD +R+
Sbjct: 560 IAPLKALVQEQVREFQRRL-AFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRN 618
Query: 810 WQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAK 869
N V+ V L+IIDEIHLL +DRGPVLE IV+R + S Y + R++GLS L N +
Sbjct: 619 SNNLAIVELVRLLIIDEIHLLHDDRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYE 678
Query: 870 DLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPE-K 928
D+ +L + K+G++ F S RP PL G + ++ MN Y + + E
Sbjct: 679 DVGRFLRVPKEGLFYFDSSFRPCPLSQQFCGIKERNSLKKLKAMNDACYEKVLESINEGN 738
Query: 929 PVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVD----NIKDSNLK 981
+++FV SR++T TA L A E N + +DA I+ N+ D +L+
Sbjct: 739 QIIVFVHSRKETSRTATWLKNKFA-EENITHKLTKNDAGSKQILKTEAANVLDPSLR 794
Score = 242 (90.2 bits), Expect = 5.5e-25, Sum P(4) = 5.5e-25
Identities = 57/146 (39%), Positives = 83/146 (56%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y+ + G + + DVLQ+ GRAGRP+Y+T G IIT + +YLS+L Q+P
Sbjct: 848 KGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQLP 907
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDE 274
IES FV+ L DNLNAEV G I ++AV WL +V LA + +V I + D
Sbjct: 908 IESQFVSKLVDNLNAEVVAGNIKCRNDAVNWLAYTYLYVRMLASPMLYKVP--DISS-DG 964
Query: 275 AVRWLSYSYLHVRMRINPREYGISYD 300
++ S +H + I + + YD
Sbjct: 965 QLKKFRESLVHSALCILKEQELVLYD 990
Score = 180 (68.4 bits), Expect = 1.4e-22, Sum P(4) = 1.4e-22
Identities = 78/314 (24%), Positives = 141/314 (44%)
Query: 205 YLSLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLII-------YINFVANLA 257
Y+ N++ +E +A+ D++ +V + T N+ + +I Y+ ++ +
Sbjct: 1695 YMPYTINEL-LEMVGLASGNDSMAGKVLILTSHNMKAYYKKFLIEPLPTESYLQYIIH-- 1751
Query: 258 DNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGI---SYDEVATD-PDLIQH-R 312
D LN E+A I + + V W +YSY + R+ +NP YG+ S ++ +L++
Sbjct: 1752 DTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPSYYGVRDTSPHGISVFLSNLVETCL 1811
Query: 313 TTLIENA-AQILDKAHMIRFNMRTRDLAITDLGRTASNYYI-KHNDIELFT-EHMTKVLD 369
L+E++ +I D + + D T++ T SN I H + FT + L
Sbjct: 1812 NDLVESSFIEIDDTEAEVTAEVNGGDDEATEIISTLSNGLIASHYGVSFFTIQSFVSSLS 1871
Query: 370 DVGILS----MISQAHEFEQLKVRDEELHELDNLTQEC-CEIPIRGGSENVHGKVNILLQ 424
+ L ++S A EFE + +R + L L++ P S +V KV +LLQ
Sbjct: 1872 NTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQ 1931
Query: 425 TLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWP 484
SR + +DL+ + + V+ +I + +I L N + A + A M W
Sbjct: 1932 AYFSRLEL-PVDFQNDLKDILEKVVPLINVVVDI-LSANGYLNATTAMDLAQMLIQGVWD 1989
Query: 485 HETPLRQIKLVTNR 498
+ PLRQI N+
Sbjct: 1990 VDNPLRQIPHFNNK 2003
Score = 156 (60.0 bits), Expect = 2.1e-99, Sum P(2) = 2.1e-99
Identities = 41/107 (38%), Positives = 58/107 (54%)
Query: 14 DEVHLLHGDRGPVI--EALVARTLRQIGQEVFKGVK--SLNRIQSLVYDTAYHTNENLLI 69
DE+H+ + PVI E +L QE F + SLN IQS V+ A+ + N+LI
Sbjct: 461 DEIHIPAPSK-PVIDYELKEITSLPDWCQEAFPSSETTSLNPIQSKVFHAAFEGDSNMLI 519
Query: 70 CAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVL 116
CAPTG+GKTN+A+LT+ + H + T+ N V+I L L
Sbjct: 520 CAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKAL 566
Score = 136 (52.9 bits), Expect = 1.5e-105, Sum P(3) = 1.5e-105
Identities = 27/43 (62%), Positives = 36/43 (83%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTL--RQIGQE 41
++A+ ELV+LLIIDE+HLLH DRGPV+E++VART + GQE
Sbjct: 621 NLAIVELVRLLIIDEIHLLHDDRGPVLESIVARTFWASKYGQE 663
Score = 106 (42.4 bits), Expect = 1.5e-105, Sum P(3) = 1.5e-105
Identities = 32/104 (30%), Positives = 56/104 (53%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
+L+C T A N+ AH + I +GT++Y+ + G + + DVLQ+ GRAGRP+
Sbjct: 827 VLVCTATLAWGVNLP----AHTV---IIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPR 879
Query: 127 YNTSDLG---RTASN--YYIK--HNDIELFTEHMTKGTEMYNAK 163
Y+T G SN YY+ + + + ++ ++K + NA+
Sbjct: 880 YDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAE 923
Score = 97 (39.2 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 23/79 (29%), Positives = 48/79 (60%)
Query: 25 PVIEALVARTLRQIGQEVFKGV---KSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVA 81
P++E + T ++G + F V K+ N+IQS V+++ Y++N+++ + + G GKT +A
Sbjct: 1322 PLLENISIST-SELGNDDFSEVFEFKTFNKIQSQVFESLYNSNDSVFVGSGKGTGKTAMA 1380
Query: 82 MLTIAHQIKQHISQGTEMY 100
L + + +Q+ +G +Y
Sbjct: 1381 ELALLNHWRQN--KGRAVY 1397
Score = 95 (38.5 bits), Expect = 7.6e-14, Sum P(5) = 7.6e-14
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 156 GTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPI 215
GT +Y+ Y+ I ++L++ G A + +G I+T H +Y L +P
Sbjct: 1684 GTNLYDGAEHKYMPYTINELLEMVGLASGND-SMAGKVLILTSHNMKAYYKKFLIEPLPT 1742
Query: 216 ESNFVANLADNLNAEVALGTIGNIDEAVRW 245
ES + D LN E+A I + + V W
Sbjct: 1743 ESYLQYIIHDTLNNEIANSIIQSKQDCVDW 1772
Score = 57 (25.1 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 130 SDLGRTASNYYIKHNDIELFTEHMTKGT 157
+DLG AS++YI H ++++ + + T
Sbjct: 999 TDLGNIASSFYINHASMDVYNRELDEHT 1026
Score = 45 (20.9 bits), Expect = 5.5e-25, Sum P(4) = 5.5e-25
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 413 ENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIM 467
E V +N+++ L + G +N+ + + + + Q V + L +I H NN I+
Sbjct: 1952 EKVVPLINVVVDILSANGYLNATTAMDLAQMLIQGVWDVDNPLRQIP-HFNNKIL 2005
Score = 44 (20.5 bits), Expect = 7.1e-05, Sum P(4) = 7.1e-05
Identities = 45/166 (27%), Positives = 64/166 (38%)
Query: 96 GTEMYNAKHGCYVHIGILDVLQIFGRA-GRPQYNTSDLGRTASN---YYIKHNDIELFTE 151
GT +Y+ Y+ I ++L++ G A G L T+ N YY K L TE
Sbjct: 1684 GTNLYDGAEHKYMPYTINELLEMVGLASGNDSMAGKVLILTSHNMKAYYKKFLIEPLPTE 1743
Query: 152 -------HMTKGTEMYNA----KHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHE 200
H T E+ N+ K C F R R N S + T
Sbjct: 1744 SYLQYIIHDTLNNEIANSIIQSKQDCVDWF----TYSYFYR--RIHVNPSYYGVRDTSPH 1797
Query: 201 KLNHYLSLLT----NQIPIESNFVANLADNLNAEVALGTIGNIDEA 242
++ +LS L N + +ES+F+ D+ AEV G DEA
Sbjct: 1798 GISVFLSNLVETCLNDL-VESSFIE--IDDTEAEVTAEVNGGDDEA 1840
Score = 43 (20.2 bits), Expect = 5.5e-25, Sum P(4) = 5.5e-25
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 772 LKKKV-VELTGDVTPDIQAISSASVIVTTPEKW 803
+K+K+ ++LT DV P+ ++S E W
Sbjct: 2067 VKQKITIQLTRDVEPENLQVTSEKYPFDKLESW 2099
Score = 41 (19.5 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 11/57 (19%), Positives = 30/57 (52%)
Query: 317 ENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIK--HNDIELFTEHMTKVLDDV 371
++ Q+L +A R++ + ITD YY+ + + + ++ ++K++D++
Sbjct: 866 QDVLQMLGRAGRPRYDTFGEGIIITDQSNV--QYYLSVLNQQLPIESQFVSKLVDNL 920
>GENEDB_PFALCIPARUM|PFD1060w [details] [associations]
symbol:PFD1060w "u5 small nuclear
ribonucleoprotein-specific protein, putative" species:5833
"Plasmodium falciparum" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 489 (177.2 bits), Expect = 5.4e-91, Sum P(5) = 5.4e-91
Identities = 119/447 (26%), Positives = 232/447 (51%)
Query: 322 ILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAH 381
IL+K +I++N + ++ T +G+ +S YY+ + I+++ + + K +++ +L + + ++
Sbjct: 1361 ILEKYDLIKYNKKLNTVSSTYIGKISSYYYVDYKSIDIYNKKLNKYTNEIDLLKIFTMSN 1420
Query: 382 EFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDL 441
EF+ + +RDEE EL ++ E IP++ + K+NILLQ LS +N + + +D+
Sbjct: 1421 EFKNIFIRDEEKTEL-SIIMEKLPIPVKESINIPYTKINILLQLYLSNIILNGYIINADM 1479
Query: 442 EYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQ 501
Y++QN +RI R+ FEI+L +N+ + LKF M E + W TPLRQ L
Sbjct: 1480 VYIHQNALRIFRSFFEISLKKNSYNLIKLTLKFCKMIERRMWSTMTPLRQFGL------- 1532
Query: 502 SPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLL 561
L +++ IE++ +T ++ M E + ++ + + + P LE+ + +
Sbjct: 1533 ---LSTELIRIIEKKNITFKNYLTMNLNEYITIFKNKKIAKNIYKLVHHFPKLELNAYIQ 1589
Query: 562 PITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKK---QVI 618
PI +LK+ L I +F +N K Y FW++V D ++ I H + F L K ++
Sbjct: 1590 PINHKILKVDLNIAPDFIYNPKYHG-YFMLFWVFVFDISNESILHYDLFTLKKNYKNDIL 1648
Query: 619 TKSE------------------ESLIMT--IPLSD-PLPNQYLIRAMSDRYLGSVVQHSM 657
+++ + ++T +P++D P Y+++ +SD++L ++
Sbjct: 1649 NQTQRYNNNGNNSNMYNPSDVLDDHVLTFFLPINDNPF---YIVKVISDKWLECEATINL 1705
Query: 658 SFKHLIVPELHPPHTNLLELQPLPVSALQQPQ----YESLYKFSHFNPIQTQIFHCLYHT 713
K LI+P + T LL+LQPLP+ +++ + + ++ +FN I TQIF ++
Sbjct: 1706 YLKDLILPSQNFYSTQLLDLQPLPIHSIKYDKAHTFFNNIRNLHYFNSIHTQIFSSIFEN 1765
Query: 714 DNNVLLGAPTGSGKTIAAEITCFRVFK 740
+ NVL+ + I AE+ ++ K
Sbjct: 1766 NGNVLIASSNSKHYLIPAELGMIKILK 1792
Score = 293 (108.2 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 68/188 (36%), Positives = 110/188 (58%)
Query: 671 HTNLLELQPLPVSALQQPQYE--SLYKFSHFNPIQTQIFHCLYHT-DNNVLLGAPTGSGK 727
+T+ E++ + ++ L + +E S + NPIQ++++ ++ + N+L+ APTGSGK
Sbjct: 685 YTSPEEIKLIHINELPEWTHEVFSCVNITKLNPIQSKVYDVAFNKYEENMLICAPTGSGK 744
Query: 728 TIAAEITCFRVFKQC---------PEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778
T A + V + K+VYI+P+KALV E+V + ++ + + KV E
Sbjct: 745 TNIALLCILNVINSYRLTSGNINRKDFKIVYISPMKALVNEQVQSFNLRLKC-MNIKVSE 803
Query: 779 LTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVL 838
LTGDV + + + +IV TPEK+D +SR W + + + LII DEIHLL E RG VL
Sbjct: 804 LTGDVNLSTKELDDSQIIVMTPEKFDVISRKWNEKILLHKIKLIIFDEIHLLNEMRGNVL 863
Query: 839 EVIVSRVN 846
E I++R+N
Sbjct: 864 ESIIARIN 871
Score = 222 (83.2 bits), Expect = 5.4e-91, Sum P(5) = 5.4e-91
Identities = 44/92 (47%), Positives = 61/92 (66%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT +YN G + + +DVLQ+ GR+GRPQY+ SG A IIT H+ L YLSL Q+
Sbjct: 1150 KGTSVYNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKAIIITDHKNLQLYLSLNNEQLF 1209
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
IES + N+ + +NAE+ L I N+D+A+ WL
Sbjct: 1210 IESTLLHNIVNIINAEIVLKNIQNMDDAMNWL 1241
Score = 182 (69.1 bits), Expect = 5.4e-91, Sum P(5) = 5.4e-91
Identities = 32/110 (29%), Positives = 66/110 (60%)
Query: 746 KVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDG 805
K+VYIAPL ++ + +W+ + K+ LTGD+ D++ + + +I++ P +D
Sbjct: 1834 KIVYIAPLDDVIIKTFKNWQA-MKKTFDLKMCILTGDIQIDMKLLQTHHIILSNPSNYDN 1892
Query: 806 VSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRN 855
+S+ W+ + +Q+V+ I D + LL +G ++E+++SR+ +IS+ N
Sbjct: 1893 ISKKWRRKKILQTVSFYIFDHMELLDTVQGGIMEILISRIRYISTQLNIN 1942
Score = 145 (56.1 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 34/100 (34%), Positives = 57/100 (57%)
Query: 850 SYTKRNVRLVGLSTALANAKDLATWLNI-TKQGMYNFRPSVRPVPLEVHISGFPGKQYCP 908
S ++ +RLVGLS L N +D+ +L ++G++ F S RPV +E H G K+
Sbjct: 961 SIRRKKIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHYIGIKEKKGIK 1020
Query: 909 RMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLI 948
+ A MN+ Y + + + + ++IFV SR++T T+ LI
Sbjct: 1021 KYALMNELTYEKVLEEAGKNQILIFVHSRKETYRTSKLLI 1060
Score = 137 (53.3 bits), Expect = 5.4e-91, Sum P(5) = 5.4e-91
Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 41 EVFK--GVKSLNRIQSLVYDTAYHT-NENLLICAPTGAGKTNVAMLTIAHQIKQH-ISQG 96
EVF + LN IQS VYD A++ EN+LICAPTG+GKTN+A+L I + I + ++ G
Sbjct: 705 EVFSCVNITKLNPIQSKVYDVAFNKYEENMLICAPTGSGKTNIALLCILNVINSYRLTSG 764
Query: 97 TEMYNAKHGCYVHIGILDVL 116
N K V+I + L
Sbjct: 765 N--INRKDFKIVYISPMKAL 782
Score = 132 (51.5 bits), Expect = 5.4e-91, Sum P(5) = 5.4e-91
Identities = 46/153 (30%), Positives = 77/153 (50%)
Query: 842 VSRVNFISSYTKRNV-------RLVGLST-ALANAKDLATWLNITKQGMYNFRPSVRPVP 893
V +N + ++T N+ R++ LS+ +L N+KD A W+ K YNF +VR +P
Sbjct: 2001 VQTINALQNFTIDNIYDYIGLNRILCLSSCSLYNSKDFAEWIGCKKNDYYNFLSTVRDIP 2060
Query: 894 LEV--HISGFPGKQYCPRMAKMNKPIYTAIKQ--HSPEKP----VMIFVSSRRQTRLTAI 945
+E+ H KQ R M + +Y I++ + P+K V+IFV+ ++ + A+
Sbjct: 2061 IEIYLHAVNIMNKQN--RYISMQRQVYQNIRKLKNIPKKKKMQNVIIFVTDQKLCKTLAL 2118
Query: 946 DLITILACETNPKMWVHTSDAEMDNIVDNIKDS 978
DLI + A N K + + E D+ D K S
Sbjct: 2119 DLI-LSAYNDNFKYFSLFENYE-DDKYDTSKSS 2149
Score = 125 (49.1 bits), Expect = 8.6e-13, Sum P(3) = 8.6e-13
Identities = 116/528 (21%), Positives = 216/528 (40%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T +N K Y I ++L++ AGR +T I T K +Y + + + +E
Sbjct: 2359 THFHNNKEEDY---SIQNILEMISYAGRQNEDTKAFVYIYTYITKKEYYKNFIYEPLTVE 2415
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAV 276
SN NL + LN E+ + TI N +A+ WL + F + N N L I N +
Sbjct: 2416 SNIEDNLPNFLNNEIVMSTIENYQDAIDWLT-WSFFYRRIKKNPNY-YGLKGISN-EHIS 2472
Query: 277 RWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRF-NMRT 335
+LS + M I I+ +E D I+ I ++ LD H+I F N
Sbjct: 2473 DYLS-ELIENNMEILSFANCINIEEQTMD---IKPCNLGIISSFYNLDY-HIIHFFNQYV 2527
Query: 336 RDLAITDLGRTASNYYIKH--NDI-ELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEE 392
L R + + NDI ++ + L + + +EF +L + +E
Sbjct: 2528 LSLKTLKKSRIFEIICLSNIFNDILKIHNYDIFLCLKIAQACNNVQVTYEFLKLSINNEN 2587
Query: 393 -LHEL---DNLTQECCEIPIRGGSE-NVHGKVNI-------LLQTLLSRGRVNSFSLVSD 440
L DNL ++ + N+ +++ L +L + ++ +SL
Sbjct: 2588 TLKNANIEDNLNKDTKSEDYKKDQYINLLQFMSVPMYFTSHLKAFILLQAHIHRYSL--P 2645
Query: 441 LEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFAL-MFETKQWPHETPLRQIKLVTNRG 499
L Y+ + +++A +++ + I + L F L + E Q L Q T++
Sbjct: 2646 LNYIQETKTVLLKA-YKLINSLIDVISSNNILNFCLFVMEVSQM-----LTQSMKSTDQS 2699
Query: 500 --YQSPILKPDILNKIEQRG-LTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI----P 552
YQ P ++ K L V DL + +L+ H+ +K + + P
Sbjct: 2700 NLYQLPHFDEHLIKKANDLEILDVYDLINAEDEPRDILLK--HLNEKQRSEIANVCNIFP 2757
Query: 553 LLEIESKL-LPIT---RTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIY--- 605
++E++ ++ L + + +++LTI+ + + + +A ++ E + +I
Sbjct: 2758 IIEVQYEIDLDKSYKVNEIAQLNLTIERDLT---DDAVIFAHSLYLPFEKEEMWWIVIGI 2814
Query: 606 HSEYFLLS-KKQVITKSEESLIMTIPLSDPLPNQY--LIRAMSDRYLG 650
LLS KK + KS ++ + L D PN Y +I ++D Y+G
Sbjct: 2815 KKMNLLLSIKKLSLLKSVNNIKINFELPDK-PNTYDVVIYVINDCYVG 2861
Score = 120 (47.3 bits), Expect = 6.5e-81, Sum P(6) = 6.5e-81
Identities = 37/112 (33%), Positives = 58/112 (51%)
Query: 45 GVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKH 104
G+K L+R LV D + +L+C T A N+ AH + I +GT +YN
Sbjct: 1109 GLKRLDR--KLVEDLFSDRHIQVLVCTSTLAWGINLP----AHTV---IIKGTSVYNINI 1159
Query: 105 GCYVHIGILDVLQIFGRAGRPQYNTSDLGRTASNY-----YIKHNDIELFTE 151
G + + +DVLQ+ GR+GRPQY+ S +++ Y+ N+ +LF E
Sbjct: 1160 GDFDELSSMDVLQMVGRSGRPQYDKSGKAIIITDHKNLQLYLSLNNEQLFIE 1211
Score = 106 (42.4 bits), Expect = 6.5e-81, Sum P(6) = 6.5e-81
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGI 297
L I + N+ + +NAE+ L I N+D+A+ WL ++Y+++RM P YG+
Sbjct: 1208 LFIESTLLHNIVNIINAEIVLKNIQNMDDAMNWLEHTYMYIRMLKCPSLYGV 1259
Score = 81 (33.6 bits), Expect = 3.6e-85, Sum P(5) = 3.6e-85
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 4 LTELVKLLIIDEVHLLHGDRGPVIEALVARTLR 36
L +KL+I DE+HLL+ RG V+E+++AR R
Sbjct: 840 LLHKIKLIIFDEIHLLNEMRGNVLESIIARINR 872
Score = 65 (27.9 bits), Expect = 8.3e-69, Sum P(5) = 8.3e-69
Identities = 12/59 (20%), Positives = 33/59 (55%)
Query: 99 MYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFTEHMTKGT 157
MYN + C++ + D+++ + +++ +G+ +S YY+ + I+++ + + K T
Sbjct: 1351 MYNILYSCFLILEKYDLIKYNKKLNT--VSSTYIGKISSYYYVDYKSIDIYNKKLNKYT 1407
Score = 41 (19.5 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 133 GRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDV 175
GR SN N+ +F K + K CY+H + ++
Sbjct: 2275 GRKRSNNRNNKNEEHVFDYINDKMLRQFMKKGICYLHNNMTEI 2317
Score = 40 (19.1 bits), Expect = 5.1e-19, Sum P(4) = 5.1e-19
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 43 FKGVKSL---NRIQSLVYDTAYHTNENLLICA 71
F +++L N I + ++ + + N N+LI +
Sbjct: 1742 FNNIRNLHYFNSIHTQIFSSIFENNGNVLIAS 1773
>UNIPROTKB|Q8IFP1 [details] [associations]
symbol:PFD1060w "U5 small nuclear
ribonucleoprotein-specific protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 489 (177.2 bits), Expect = 5.4e-91, Sum P(5) = 5.4e-91
Identities = 119/447 (26%), Positives = 232/447 (51%)
Query: 322 ILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAH 381
IL+K +I++N + ++ T +G+ +S YY+ + I+++ + + K +++ +L + + ++
Sbjct: 1361 ILEKYDLIKYNKKLNTVSSTYIGKISSYYYVDYKSIDIYNKKLNKYTNEIDLLKIFTMSN 1420
Query: 382 EFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDL 441
EF+ + +RDEE EL ++ E IP++ + K+NILLQ LS +N + + +D+
Sbjct: 1421 EFKNIFIRDEEKTEL-SIIMEKLPIPVKESINIPYTKINILLQLYLSNIILNGYIINADM 1479
Query: 442 EYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQ 501
Y++QN +RI R+ FEI+L +N+ + LKF M E + W TPLRQ L
Sbjct: 1480 VYIHQNALRIFRSFFEISLKKNSYNLIKLTLKFCKMIERRMWSTMTPLRQFGL------- 1532
Query: 502 SPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLL 561
L +++ IE++ +T ++ M E + ++ + + + P LE+ + +
Sbjct: 1533 ---LSTELIRIIEKKNITFKNYLTMNLNEYITIFKNKKIAKNIYKLVHHFPKLELNAYIQ 1589
Query: 562 PITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKK---QVI 618
PI +LK+ L I +F +N K Y FW++V D ++ I H + F L K ++
Sbjct: 1590 PINHKILKVDLNIAPDFIYNPKYHG-YFMLFWVFVFDISNESILHYDLFTLKKNYKNDIL 1648
Query: 619 TKSE------------------ESLIMT--IPLSD-PLPNQYLIRAMSDRYLGSVVQHSM 657
+++ + ++T +P++D P Y+++ +SD++L ++
Sbjct: 1649 NQTQRYNNNGNNSNMYNPSDVLDDHVLTFFLPINDNPF---YIVKVISDKWLECEATINL 1705
Query: 658 SFKHLIVPELHPPHTNLLELQPLPVSALQQPQ----YESLYKFSHFNPIQTQIFHCLYHT 713
K LI+P + T LL+LQPLP+ +++ + + ++ +FN I TQIF ++
Sbjct: 1706 YLKDLILPSQNFYSTQLLDLQPLPIHSIKYDKAHTFFNNIRNLHYFNSIHTQIFSSIFEN 1765
Query: 714 DNNVLLGAPTGSGKTIAAEITCFRVFK 740
+ NVL+ + I AE+ ++ K
Sbjct: 1766 NGNVLIASSNSKHYLIPAELGMIKILK 1792
Score = 293 (108.2 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 68/188 (36%), Positives = 110/188 (58%)
Query: 671 HTNLLELQPLPVSALQQPQYE--SLYKFSHFNPIQTQIFHCLYHT-DNNVLLGAPTGSGK 727
+T+ E++ + ++ L + +E S + NPIQ++++ ++ + N+L+ APTGSGK
Sbjct: 685 YTSPEEIKLIHINELPEWTHEVFSCVNITKLNPIQSKVYDVAFNKYEENMLICAPTGSGK 744
Query: 728 TIAAEITCFRVFKQC---------PEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVE 778
T A + V + K+VYI+P+KALV E+V + ++ + + KV E
Sbjct: 745 TNIALLCILNVINSYRLTSGNINRKDFKIVYISPMKALVNEQVQSFNLRLKC-MNIKVSE 803
Query: 779 LTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVL 838
LTGDV + + + +IV TPEK+D +SR W + + + LII DEIHLL E RG VL
Sbjct: 804 LTGDVNLSTKELDDSQIIVMTPEKFDVISRKWNEKILLHKIKLIIFDEIHLLNEMRGNVL 863
Query: 839 EVIVSRVN 846
E I++R+N
Sbjct: 864 ESIIARIN 871
Score = 222 (83.2 bits), Expect = 5.4e-91, Sum P(5) = 5.4e-91
Identities = 44/92 (47%), Positives = 61/92 (66%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT +YN G + + +DVLQ+ GR+GRPQY+ SG A IIT H+ L YLSL Q+
Sbjct: 1150 KGTSVYNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKAIIITDHKNLQLYLSLNNEQLF 1209
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
IES + N+ + +NAE+ L I N+D+A+ WL
Sbjct: 1210 IESTLLHNIVNIINAEIVLKNIQNMDDAMNWL 1241
Score = 182 (69.1 bits), Expect = 5.4e-91, Sum P(5) = 5.4e-91
Identities = 32/110 (29%), Positives = 66/110 (60%)
Query: 746 KVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDG 805
K+VYIAPL ++ + +W+ + K+ LTGD+ D++ + + +I++ P +D
Sbjct: 1834 KIVYIAPLDDVIIKTFKNWQA-MKKTFDLKMCILTGDIQIDMKLLQTHHIILSNPSNYDN 1892
Query: 806 VSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRN 855
+S+ W+ + +Q+V+ I D + LL +G ++E+++SR+ +IS+ N
Sbjct: 1893 ISKKWRRKKILQTVSFYIFDHMELLDTVQGGIMEILISRIRYISTQLNIN 1942
Score = 145 (56.1 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 34/100 (34%), Positives = 57/100 (57%)
Query: 850 SYTKRNVRLVGLSTALANAKDLATWLNI-TKQGMYNFRPSVRPVPLEVHISGFPGKQYCP 908
S ++ +RLVGLS L N +D+ +L ++G++ F S RPV +E H G K+
Sbjct: 961 SIRRKKIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHYIGIKEKKGIK 1020
Query: 909 RMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLI 948
+ A MN+ Y + + + + ++IFV SR++T T+ LI
Sbjct: 1021 KYALMNELTYEKVLEEAGKNQILIFVHSRKETYRTSKLLI 1060
Score = 137 (53.3 bits), Expect = 5.4e-91, Sum P(5) = 5.4e-91
Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 41 EVFK--GVKSLNRIQSLVYDTAYHT-NENLLICAPTGAGKTNVAMLTIAHQIKQH-ISQG 96
EVF + LN IQS VYD A++ EN+LICAPTG+GKTN+A+L I + I + ++ G
Sbjct: 705 EVFSCVNITKLNPIQSKVYDVAFNKYEENMLICAPTGSGKTNIALLCILNVINSYRLTSG 764
Query: 97 TEMYNAKHGCYVHIGILDVL 116
N K V+I + L
Sbjct: 765 N--INRKDFKIVYISPMKAL 782
Score = 132 (51.5 bits), Expect = 5.4e-91, Sum P(5) = 5.4e-91
Identities = 46/153 (30%), Positives = 77/153 (50%)
Query: 842 VSRVNFISSYTKRNV-------RLVGLST-ALANAKDLATWLNITKQGMYNFRPSVRPVP 893
V +N + ++T N+ R++ LS+ +L N+KD A W+ K YNF +VR +P
Sbjct: 2001 VQTINALQNFTIDNIYDYIGLNRILCLSSCSLYNSKDFAEWIGCKKNDYYNFLSTVRDIP 2060
Query: 894 LEV--HISGFPGKQYCPRMAKMNKPIYTAIKQ--HSPEKP----VMIFVSSRRQTRLTAI 945
+E+ H KQ R M + +Y I++ + P+K V+IFV+ ++ + A+
Sbjct: 2061 IEIYLHAVNIMNKQN--RYISMQRQVYQNIRKLKNIPKKKKMQNVIIFVTDQKLCKTLAL 2118
Query: 946 DLITILACETNPKMWVHTSDAEMDNIVDNIKDS 978
DLI + A N K + + E D+ D K S
Sbjct: 2119 DLI-LSAYNDNFKYFSLFENYE-DDKYDTSKSS 2149
Score = 125 (49.1 bits), Expect = 8.6e-13, Sum P(3) = 8.6e-13
Identities = 116/528 (21%), Positives = 216/528 (40%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T +N K Y I ++L++ AGR +T I T K +Y + + + +E
Sbjct: 2359 THFHNNKEEDY---SIQNILEMISYAGRQNEDTKAFVYIYTYITKKEYYKNFIYEPLTVE 2415
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAV 276
SN NL + LN E+ + TI N +A+ WL + F + N N L I N +
Sbjct: 2416 SNIEDNLPNFLNNEIVMSTIENYQDAIDWLT-WSFFYRRIKKNPNY-YGLKGISN-EHIS 2472
Query: 277 RWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRF-NMRT 335
+LS + M I I+ +E D I+ I ++ LD H+I F N
Sbjct: 2473 DYLS-ELIENNMEILSFANCINIEEQTMD---IKPCNLGIISSFYNLDY-HIIHFFNQYV 2527
Query: 336 RDLAITDLGRTASNYYIKH--NDI-ELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEE 392
L R + + NDI ++ + L + + +EF +L + +E
Sbjct: 2528 LSLKTLKKSRIFEIICLSNIFNDILKIHNYDIFLCLKIAQACNNVQVTYEFLKLSINNEN 2587
Query: 393 -LHEL---DNLTQECCEIPIRGGSE-NVHGKVNI-------LLQTLLSRGRVNSFSLVSD 440
L DNL ++ + N+ +++ L +L + ++ +SL
Sbjct: 2588 TLKNANIEDNLNKDTKSEDYKKDQYINLLQFMSVPMYFTSHLKAFILLQAHIHRYSL--P 2645
Query: 441 LEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFAL-MFETKQWPHETPLRQIKLVTNRG 499
L Y+ + +++A +++ + I + L F L + E Q L Q T++
Sbjct: 2646 LNYIQETKTVLLKA-YKLINSLIDVISSNNILNFCLFVMEVSQM-----LTQSMKSTDQS 2699
Query: 500 --YQSPILKPDILNKIEQRG-LTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEI----P 552
YQ P ++ K L V DL + +L+ H+ +K + + P
Sbjct: 2700 NLYQLPHFDEHLIKKANDLEILDVYDLINAEDEPRDILLK--HLNEKQRSEIANVCNIFP 2757
Query: 553 LLEIESKL-LPIT---RTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIY--- 605
++E++ ++ L + + +++LTI+ + + + +A ++ E + +I
Sbjct: 2758 IIEVQYEIDLDKSYKVNEIAQLNLTIERDLT---DDAVIFAHSLYLPFEKEEMWWIVIGI 2814
Query: 606 HSEYFLLS-KKQVITKSEESLIMTIPLSDPLPNQY--LIRAMSDRYLG 650
LLS KK + KS ++ + L D PN Y +I ++D Y+G
Sbjct: 2815 KKMNLLLSIKKLSLLKSVNNIKINFELPDK-PNTYDVVIYVINDCYVG 2861
Score = 120 (47.3 bits), Expect = 6.5e-81, Sum P(6) = 6.5e-81
Identities = 37/112 (33%), Positives = 58/112 (51%)
Query: 45 GVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKH 104
G+K L+R LV D + +L+C T A N+ AH + I +GT +YN
Sbjct: 1109 GLKRLDR--KLVEDLFSDRHIQVLVCTSTLAWGINLP----AHTV---IIKGTSVYNINI 1159
Query: 105 GCYVHIGILDVLQIFGRAGRPQYNTSDLGRTASNY-----YIKHNDIELFTE 151
G + + +DVLQ+ GR+GRPQY+ S +++ Y+ N+ +LF E
Sbjct: 1160 GDFDELSSMDVLQMVGRSGRPQYDKSGKAIIITDHKNLQLYLSLNNEQLFIE 1211
Score = 106 (42.4 bits), Expect = 6.5e-81, Sum P(6) = 6.5e-81
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGI 297
L I + N+ + +NAE+ L I N+D+A+ WL ++Y+++RM P YG+
Sbjct: 1208 LFIESTLLHNIVNIINAEIVLKNIQNMDDAMNWLEHTYMYIRMLKCPSLYGV 1259
Score = 81 (33.6 bits), Expect = 3.6e-85, Sum P(5) = 3.6e-85
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 4 LTELVKLLIIDEVHLLHGDRGPVIEALVARTLR 36
L +KL+I DE+HLL+ RG V+E+++AR R
Sbjct: 840 LLHKIKLIIFDEIHLLNEMRGNVLESIIARINR 872
Score = 65 (27.9 bits), Expect = 8.3e-69, Sum P(5) = 8.3e-69
Identities = 12/59 (20%), Positives = 33/59 (55%)
Query: 99 MYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFTEHMTKGT 157
MYN + C++ + D+++ + +++ +G+ +S YY+ + I+++ + + K T
Sbjct: 1351 MYNILYSCFLILEKYDLIKYNKKLNT--VSSTYIGKISSYYYVDYKSIDIYNKKLNKYT 1407
Score = 41 (19.5 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 133 GRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDV 175
GR SN N+ +F K + K CY+H + ++
Sbjct: 2275 GRKRSNNRNNKNEEHVFDYINDKMLRQFMKKGICYLHNNMTEI 2317
Score = 40 (19.1 bits), Expect = 5.1e-19, Sum P(4) = 5.1e-19
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 43 FKGVKSL---NRIQSLVYDTAYHTNENLLICA 71
F +++L N I + ++ + + N N+LI +
Sbjct: 1742 FNNIRNLHYFNSIHTQIFSSIFENNGNVLIAS 1773
>UNIPROTKB|I3LAA7 [details] [associations]
symbol:I3LAA7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026
Ensembl:ENSSSCT00000023674 OMA:ENDQDET Uniprot:I3LAA7
Length = 268
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 159/221 (71%), Positives = 192/221 (86%)
Query: 763 DWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALI 822
DWKV+ E +L KKV+ELTGDVTPD+++I+ A +IVTTPEKWDGVSRSWQNRNYV+ V ++
Sbjct: 3 DWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTIL 62
Query: 823 IIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGM 882
IIDEIHLLGE+RGPVLEVIVSR NFISS+T++ VR+VGLSTALANA+DLA WLNI + G+
Sbjct: 63 IIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIRQMGL 122
Query: 883 YNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRL 942
+NFRPSVRPVPLEVHI GFPG+ YCPRMA MNKP + AI+ HSP KPV+IFVSSRRQTRL
Sbjct: 123 FNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRL 182
Query: 943 TAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLT 983
TA++LI LA E +PK W++ + EM+NI+ I+DSNLKLT
Sbjct: 183 TALELIAFLATEEDPKQWLNMDEREMENIIGTIRDSNLKLT 223
>UNIPROTKB|I3LT20 [details] [associations]
symbol:LOC100525691 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000023488 Uniprot:I3LT20
Length = 354
Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
Identities = 165/337 (48%), Positives = 232/337 (68%)
Query: 538 PHVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVE 597
P +G + + P LE+ L PITR+ LK+ LTI +F W++K + +E FWI VE
Sbjct: 2 PKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGS-SEAFWILVE 60
Query: 598 DPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSM 657
D DS+ I H EYFLL K + E + +P+ +PLP QY IR +SDR+L Q +
Sbjct: 61 DVDSEVILHHEYFLLKAKYA--QDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPV 118
Query: 658 SFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLY--KFSHFNPIQTQIFHCLYHTDN 715
SF+HLI+PE +PP T LL+LQPLPVSAL+ +ESLY KF FNPIQTQ+F+ +Y++D+
Sbjct: 119 SFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDD 178
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
NV +GAPTGSGKTI AE R+ Q E + VYI P++AL ++ DW KF+ RL KK
Sbjct: 179 NVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 238
Query: 776 VVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRG 835
VV LTG+ + D++ + ++I++TPEKWD +SR W+ R VQ++ L ++DE+HL+G + G
Sbjct: 239 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENG 298
Query: 836 PVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLA 872
PVLEVI SR+ +ISS +R +R+V LS++L+NAKD+A
Sbjct: 299 PVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA 335
>CGD|CAL0001532 [details] [associations]
symbol:orf19.3098 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000388 "spliceosome conformational change to
release U4 (or U4atac) and U1 (or U11)" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001532 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 KO:K12854 GO:GO:0008026 EMBL:AACQ01000086
EMBL:AACQ01000085 RefSeq:XP_715407.1 RefSeq:XP_715477.1
ProteinModelPortal:Q5A0Z8 STRING:Q5A0Z8 GeneID:3642881
GeneID:3642903 KEGG:cal:CaO19.10610 KEGG:cal:CaO19.3098
Uniprot:Q5A0Z8
Length = 1987
Score = 487 (176.5 bits), Expect = 7.7e-74, Sum P(3) = 7.7e-74
Identities = 128/438 (29%), Positives = 221/438 (50%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGI--SYDEVA 303
L I + L DN+NAE+ G+I I+E + WL+Y+Y VRM +P YG+ +YD
Sbjct: 772 LPIESQLIHKLVDNINAEIVAGSITTIEEGIEWLTYTYFFVRMLQSPALYGVEATYD-FT 830
Query: 304 TDPDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEH 363
DP L R LI A IL + ++ +N +A T+LG+ AS++YI I L+ +
Sbjct: 831 NDPTLYNRRADLIYTAFCILHENKLVVYNAALGSVASTELGKIASHFYINFETINLYGKM 890
Query: 364 MTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILL 423
+ + ILS+ S + EF+ + VR EE E+ L ++C IPI+ K+NILL
Sbjct: 891 LKPWHSETDILSVFSNSGEFKYVPVRQEERLEISKLMEKC-PIPIKEQPNEPLAKINILL 949
Query: 424 QTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQW 483
QT +SR + ++L++D+ Y+ Q+ R++RAL+EI L + + +A L M + + W
Sbjct: 950 QTFISRLSLEGYALIADMIYITQSAGRLLRALYEIALLQKWSSLAKSILNLCKMVDKRLW 1009
Query: 484 PHETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDK 543
+ +PLRQ ++ I+ E L + E++ L
Sbjct: 1010 LNNSPLRQF---------GDVVPHQIIRASEMSHLPWIRYFHLNPDELAVALNLKGNAQI 1060
Query: 544 VKQCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDF 603
KQ P + I+ + PIT L+I + + +SW + E F +++E D +
Sbjct: 1061 AKQYIDSFPKVSIQYMVQPITEQFLRIQVEVIPEWSWISAIHGSQ-EIFNVFLEGCDGNK 1119
Query: 604 IYHSEYFLLSKKQVITKSEESLIMTIP-LSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHL 662
+ HSE F++ +K + L +P ++ PLPN Y++ +S++++ + S+ +
Sbjct: 1120 LLHSEQFIVKRKNI--NKPHILEFFVPFVAPPLPN-YILSFVSEKWVHCTWKSSILLSDV 1176
Query: 663 IVPELHPPHT-NLLELQP 679
I P++ P + N ++L P
Sbjct: 1177 ISPKVSPHYLDNNVDLVP 1194
Score = 465 (168.7 bits), Expect = 2.6e-39, Sum P(2) = 2.6e-39
Identities = 118/306 (38%), Positives = 180/306 (58%)
Query: 650 GSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKF--SHFNPIQTQIF 707
G++ + S+ + VP ++ EL LP+S L E+ K + FN IQ++I+
Sbjct: 325 GTIHEVKKSYDTITVPAPAQSLSDNDEL--LPISTLPDWAQEAFPKTETTTFNRIQSKIY 382
Query: 708 HCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFK--------QCPEAKVVYIAPLKALVKE 759
+ + TDNN+L+ APTG+GKT A +T R + Q K+VYIAPLKALV+E
Sbjct: 383 NQAFETDNNLLICAPTGAGKTNVAMLTILRTIENFRNNGHIQLKNFKIVYIAPLKALVQE 442
Query: 760 RVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSV 819
++ +++ + + V ELTGD + Q I+ +IVTTPEKWD ++R ++ +YV+ V
Sbjct: 443 QMREFQRRLTSVYGVVVNELTGDSSLSKQQIAETQIIVTTPEKWDIITR--KDPSYVKLV 500
Query: 820 ALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK 879
L+IIDEIHLL ++RGPVLE +VSR S T ++R+VGLS L N D+A ++
Sbjct: 501 KLMIIDEIHLLHDERGPVLESLVSRAIRKSETTGSDIRIVGLSATLPNYADVAKFIRAKP 560
Query: 880 QGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEK-PVMIFVSSRR 938
+G++ F S RP PLE G ++ R+A MN+ Y + Q ++ ++IFV SR+
Sbjct: 561 EGLFYFDASYRPCPLEQVYIGVKEQKAIKRIAAMNEACYDRMHQSLQDRHQLIIFVHSRK 620
Query: 939 QTRLTA 944
+T TA
Sbjct: 621 ETFTTA 626
Score = 428 (155.7 bits), Expect = 2.6e-67, Sum P(3) = 2.6e-67
Identities = 106/378 (28%), Positives = 202/378 (53%)
Query: 545 KQCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFI 604
KQ P + I+ + PIT L+I + + +SW + E F +++E D + +
Sbjct: 1062 KQYIDSFPKVSIQYMVQPITEQFLRIQVEVIPEWSWISAIHGSQ-EIFNVFLEGCDGNKL 1120
Query: 605 YHSEYFLLSKKQVITKSEESLIMTIP-LSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLI 663
HSE F++ +K + L +P ++ PLPN Y++ +S++++ + S+ +I
Sbjct: 1121 LHSEQFIVKRKNI--NKPHILEFFVPFVAPPLPN-YILSFVSEKWVHCTWKSSILLSDVI 1177
Query: 664 VPELHPPHT-NLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAP 722
P++ P + N ++L P L+ F+HFN +Q+ F +Y+++NNV +G+
Sbjct: 1178 SPKVSPHYLDNNVDLVPTETVG-------DLFPFTHFNKLQSSTFDTVYNSENNVFIGSS 1230
Query: 723 TGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGD 782
G GKT+ AE+ + + ++VYI P + LV + W F + +K++ L+G+
Sbjct: 1231 KGDGKTVLAELAILNHWNN-KKGRIVYINPCQELVDKLFKKWSTFFSS-YEKEINVLSGN 1288
Query: 783 VTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIV 842
+ D +++ + +I+ TPE+++ +S+ W+ R +S+ L I D++HL+G D E++V
Sbjct: 1289 LREDSASVNQSHLILATPEQFNCLSKRWKTRKAFRSIDLFIWDDLHLVGSDVH--YEMLV 1346
Query: 843 SRVNFISS-YTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRP-----VPLEV 896
+RV ++S + +R+V LS+ + N++D+A W+ + K +NF P R + L V
Sbjct: 1347 TRVRMLTSQWDDYKLRIVALSSPVLNSRDIAEWIGVAKSETFNFAPHSRENRITEIKLSV 1406
Query: 897 HISGFPGKQYCPRMAKMN 914
S K Y +AK+N
Sbjct: 1407 ESSDNTVKIY-KDLAKVN 1423
Score = 242 (90.2 bits), Expect = 7.7e-74, Sum P(3) = 7.7e-74
Identities = 44/102 (43%), Positives = 66/102 (64%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGTE Y+ + G +V + D+LQ+ GRAGRP+Y+ +G IIT +++ +YL++L Q+P
Sbjct: 714 KGTETYSPESGAWVQLSPQDILQMLGRAGRPRYDKNGEGIIITSQDEVQYYLAILNQQLP 773
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANL 256
IES + L DN+NAE+ G+I I+E + WL FV L
Sbjct: 774 IESQLIHKLVDNINAEIVAGSITTIEEGIEWLTYTYFFVRML 815
Score = 165 (63.1 bits), Expect = 7.7e-74, Sum P(3) = 7.7e-74
Identities = 39/79 (49%), Positives = 49/79 (62%)
Query: 28 EALVARTLRQIGQEVFKGVKS--LNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
E L TL QE F ++ NRIQS +Y+ A+ T+ NLLICAPTGAGKTNVAMLTI
Sbjct: 351 ELLPISTLPDWAQEAFPKTETTTFNRIQSKIYNQAFETDNNLLICAPTGAGKTNVAMLTI 410
Query: 86 AHQIKQHISQG-TEMYNAK 103
I+ + G ++ N K
Sbjct: 411 LRTIENFRNNGHIQLKNFK 429
Score = 128 (50.1 bits), Expect = 3.4e-35, Sum P(3) = 3.4e-35
Identities = 94/401 (23%), Positives = 169/401 (42%)
Query: 264 VALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQIL 323
VA G I + L++++ + R+ NP Y + EV+ + + + LIE+
Sbjct: 1600 VANGIIKQRQNCIDVLTFTFFYRRLLKNPSFYDLK--EVSNS-GISTYLSELIESVFDDF 1656
Query: 324 DKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKV-LDDVGILSMISQAHE 382
+K I ++ + AS+Y + ++ K L D I ++ A E
Sbjct: 1657 NKEEFIEEEDEGDTISPLNKIVIASHYNSTFETVSNLSKLSNKSKLKD--IFHALTNATE 1714
Query: 383 FEQLKVRDEELHELDNLTQECCEIPIRGGSENVHG---KVNILLQTLLSRGRVNSFSLVS 439
F L VR+ E L L + +PI+ ++ K ILLQ +SR + F L
Sbjct: 1715 FSDLPVREGEDALLIKLQTK---LPIKYSQDDYESPFFKAFILLQAHISRISI-PFDLRQ 1770
Query: 440 DLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRG 499
D + V V++I+ A +I L + ++ + + M W + PLRQ+ TN
Sbjct: 1771 DQKSVLTRVLQILNAAIDI-LSSDGSLNVLLAMDLSQMIVQAVWSSDNPLRQVPRFTN-- 1827
Query: 500 YQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLRDPHVG-DKVKQCAWEIPLLEIE 557
+IL + Q + TV D+ + +E + +L+ P ++V P +E+
Sbjct: 1828 --------EILARCTQHNVETVYDIMSLEDEERNEILQLPDQELNEVASFVNSYPNIELS 1879
Query: 558 SKLLP-ITRTVLK-IHLTIKANFSWND----KNKS---TYAEPFWIWVEDPDSDFIYHSE 608
++ +T K + +TI + KN++ T E +WI V D + +Y +
Sbjct: 1880 YEMKGGVTSNESKFVTVTIDRDEEIESLEVVKNENFPVTKQENWWIVVGDSKTRHLYGIK 1939
Query: 609 YFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYL 649
+ K I++S E + TIP ++ I + D YL
Sbjct: 1940 KVNIQK---ISQSFE-IEFTIPNKGK--HELTIYLICDSYL 1974
Score = 123 (48.4 bits), Expect = 1.9e-69, Sum P(3) = 1.9e-69
Identities = 22/37 (59%), Positives = 32/37 (86%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQ 37
D + +LVKL+IIDE+HLLH +RGPV+E+LV+R +R+
Sbjct: 493 DPSYVKLVKLMIIDEIHLLHDERGPVLESLVSRAIRK 529
Score = 98 (39.6 bits), Expect = 2.3e-54, Sum P(3) = 2.3e-54
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 86 AHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLG 133
AH + I +GTE Y+ + G +V + D+LQ+ GRAGRP+Y+ + G
Sbjct: 708 AHTV---IIKGTETYSPESGAWVQLSPQDILQMLGRAGRPRYDKNGEG 752
Score = 75 (31.5 bits), Expect = 7.5e-13, Sum P(4) = 7.5e-13
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 50 NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
N++QS +DT Y++ N+ I + G GKT +A L I
Sbjct: 1208 NKLQSSTFDTVYNSENNVFIGSSKGDGKTVLAELAI 1243
Score = 50 (22.7 bits), Expect = 2.6e-39, Sum P(2) = 2.6e-39
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 354 HNDIELFTEHMTKVLDDVGILSMISQAHEFEQL---KVRDEELHELDNLT 400
H I+ +E ++ L + I S+ + E E+L + D++LHEL NL+
Sbjct: 79 HEVIQSASEVASEQLSNRDI-SVPEKRKELEELLNASISDDDLHELINLS 127
Score = 47 (21.6 bits), Expect = 8.1e-48, Sum P(4) = 8.1e-48
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 129 TSDLGRTASNYYIKHNDIELF 149
+++LG+ AS++YI I L+
Sbjct: 867 STELGKIASHFYINFETINLY 887
Score = 43 (20.2 bits), Expect = 2.3e-15, Sum P(5) = 2.3e-15
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 156 GTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPI 215
GT +Y+ ++ + D+ ++ G G I T + + Y S L + + +
Sbjct: 1530 GTRVYDGHEHRFLDYPLNDLYEMVGCC-----QDGGVVHIYTTSQMVEFYSSFLNSGLAV 1584
Query: 216 ESNFVANLADNLNAEVALGTI 236
ES +L + VA G I
Sbjct: 1585 ESLLSNSLHEFFMDAVANGII 1605
>UNIPROTKB|F1SU44 [details] [associations]
symbol:F1SU44 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000008903 OMA:NETIATY Uniprot:F1SU44
Length = 1027
Score = 476 (172.6 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 119/306 (38%), Positives = 172/306 (56%)
Query: 650 GSVVQHSMSFKHLIVPELHP-PHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFH 708
GS + ++ + VP L P P ++ E Q LPV L + F N IQ++++
Sbjct: 433 GSFRRQRKGYEEVHVPALKPKPFSS--EEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYR 490
Query: 709 CLYHTDNNVLLGAPTGSGKTIAAEITCFR-VFKQC--------PEAKVVYIAPLKALVKE 759
TD N+LL APTG+GKT A + R + K + K++YIAP+++LV+E
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 760 RVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSV 819
V + + A V ELTGD + IS+ +IV TPEKWD ++R R Y Q V
Sbjct: 551 MVGSFGKRL-ATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLV 609
Query: 820 ALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK 879
LII+DEIHLL +DRGPVLE +V+R T+ +VRL+GLS L N +D+AT+L +
Sbjct: 610 RLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDP 669
Query: 880 -QGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRR 938
+G++ F S RPVPLE G K+ R MN+ +Y I +H+ + V++FV SR+
Sbjct: 670 AKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRK 729
Query: 939 QTRLTA 944
+T TA
Sbjct: 730 ETGKTA 735
Score = 244 (91.0 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 45/84 (53%), Positives = 60/84 (71%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y+ + G + +G LD+LQ+ GRAGRPQY+T G +IT H +L +YLSLL Q+P
Sbjct: 829 KGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLP 888
Query: 215 IESNFVANLADNLNAEVALGTIGN 238
IES VA L D LNAE+ LG + N
Sbjct: 889 IESQMVAKLPDMLNAEIVLGNVQN 912
Score = 173 (66.0 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 28 EALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAH 87
+ L L + Q F+G K+LNRIQS +Y A T+ENLL+CAPTGAGKTNVA++ +
Sbjct: 460 QLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLR 519
Query: 88 QIKQHISQ-GT 97
+I +HI+ GT
Sbjct: 520 EIGKHINMDGT 530
Score = 133 (51.9 bits), Expect = 2.9e-29, Sum P(3) = 2.9e-29
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 5 TELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
T+LV+L+I+DE+HLLH DRGPV+EALVAR +R I
Sbjct: 606 TQLVRLIILDEIHLLHDDRGPVLEALVARAIRNI 639
Score = 122 (48.0 bits), Expect = 3.4e-16, Sum P(3) = 3.4e-16
Identities = 36/123 (29%), Positives = 66/123 (53%)
Query: 49 LNRI-QSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCY 107
+ R+ ++LV D + +L+ T A N+ AH + I +GT++Y+ + G +
Sbjct: 789 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLP----AHTV---IIKGTQVYSPEKGRW 841
Query: 108 VHIGILDVLQIFGRAGRPQYNTSDLGRTASN-----YYIK--HNDIELFTEHMTKGTEMY 160
+G LD+LQ+ GRAGRPQY+T G ++ YY+ + + + ++ + K +M
Sbjct: 842 TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDML 901
Query: 161 NAK 163
NA+
Sbjct: 902 NAE 904
Score = 90 (36.7 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 340 ITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVR 389
+T+LGR AS+YYI ++ ++ + + + L ++ + + S + EF+ + VR
Sbjct: 978 VTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVR 1027
Score = 55 (24.4 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGN 271
L I VA L D LNAE+ LG + N
Sbjct: 887 LPIESQMVAKLPDMLNAEIVLGNVQN 912
Score = 54 (24.1 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 128 NTSDLGRTASNYYIKHNDIELFTE 151
+ ++LGR AS+YYI ++ ++ + +
Sbjct: 977 HVTELGRIASHYYITNDTVQTYNQ 1000
>ASPGD|ASPL0000030426 [details] [associations]
symbol:AN5514 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 EMBL:BN001305 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 eggNOG:COG1204 EMBL:AACD01000094 GO:GO:0008026
KO:K15271 OrthoDB:EOG4WWVSR RefSeq:XP_663118.1
ProteinModelPortal:Q5B1R6 EnsemblFungi:CADANIAT00003572
GeneID:2871792 KEGG:ani:AN5514.2 HOGENOM:HOG000216651
Uniprot:Q5B1R6
Length = 1385
Score = 472 (171.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 115/293 (39%), Positives = 165/293 (56%)
Query: 682 VSALQQPQ-YESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVF- 739
+S + P Y L+ F FN +Q++ FH +Y +D+NV++ APTGSGKT+ E+ R+
Sbjct: 232 LSVRELPDNYRPLFNFPVFNAVQSKCFHAIYKSDDNVVIAAPTGSGKTVVMELAICRLLN 291
Query: 740 -KQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVT-PDIQAISSASVIV 797
++ + KVVY AP K+L ER DW KF A L + ELTGD + + + +IV
Sbjct: 292 IRKDKKFKVVYQAPTKSLCSERFRDWNQKFHA-LGLQCAELTGDTDHSQLGNVQNRQIIV 350
Query: 798 TTPEKWDGVSRSWQNR-NYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNV 856
TTPEKWD ++R W++ +Q V L +IDE+H L E RG LE +VSR+ I S NV
Sbjct: 351 TTPEKWDSMTRKWKDHIRLMQPVKLFLIDEVHTLKEARGATLEAVVSRMKSIGS----NV 406
Query: 857 RLVGLSTALANAKDLATWL--NITKQGM----YNFRPSVRPVPLEVHISG--FPGKQYCP 908
R V LS + N++D+ATWL N T Q + +F RPV L+ + G F G +
Sbjct: 407 RFVALSATIPNSEDIATWLGRNATSQHVPAHREHFGEEFRPVKLQKFVYGYHFSGNNFAF 466
Query: 909 RMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETN-PKMW 960
+N I I HS +KP+MIF S+R T TA +L + + + +MW
Sbjct: 467 DKL-LNSNI---IGTHSAKKPIMIFCSTRNSTVSTAKELARLWSMSSRLVRMW 515
Score = 181 (68.8 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 62/251 (24%), Positives = 115/251 (45%)
Query: 255 NLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDP-DLIQHRT 313
NL ++LNAE+ LG I + + A WL+ ++L VR+R NP Y + D ++++H
Sbjct: 624 NLIEHLNAEIGLGNIKSTESAASWLAGTFLSVRLRRNPTHYRLKEGANRNDTNEMLRH-- 681
Query: 314 TLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGI 373
+ E ++L + ++ T L T G S Y I++ ++ + K D I
Sbjct: 682 -ICEKDIKLLQEYALVD----TESLKSTPFGYAMSRYSIRYETMKTLIKMKPKS-DIAQI 735
Query: 374 LSMISQAHEFEQLKVRDEE--LHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
L++I QA EF ++ + E L++ N +++ PI K+++L+Q+ L
Sbjct: 736 LAIICQAEEFRDIRFKAGEKLLYKEINRSKDI-RFPIEVDIVLPAHKISLLIQSELGAVE 794
Query: 432 VNS--------FSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQW 483
S F+ + V +V R+IR + + H +++ L A + W
Sbjct: 795 FPSGEQFQKHRFTFQQEKSTVFAHVNRVIRCIIDCQAHLKDSVTLCNALGLARSLAARVW 854
Query: 484 PHET-PLRQIK 493
H ++QI+
Sbjct: 855 DHSPFQMKQIE 865
Score = 180 (68.4 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 39/116 (33%), Positives = 63/116 (54%)
Query: 135 TASNYYIKHNDIELFTEHMTKGTEMYNAK----HGCYVHIGILDVLQIFGRAGRPQYNTS 190
TA+ H +E H+ + + +GC L+V+Q+ GRAGRPQ++ S
Sbjct: 533 TAAGVAFHHAGLETEDRHLVENGYLQGKISVICYGCGQEYSDLEVMQMLGRAGRPQFDDS 592
Query: 191 GHATIITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
A I+T E+++HY L++ +ES+ NL ++LNAE+ LG I + + A WL
Sbjct: 593 ATAVILTRKERVSHYERLVSGSESVESSLHLNLIEHLNAEIGLGNIKSTESAASWL 648
Score = 86 (35.3 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 22 DRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVA 81
DRG I L R L + +F N +QS + Y +++N++I APTG+GKT V
Sbjct: 226 DRG--IALLSVRELPDNYRPLFN-FPVFNAVQSKCFHAIYKSDDNVVIAAPTGSGKTVVM 282
Query: 82 MLTI 85
L I
Sbjct: 283 ELAI 286
Score = 85 (35.0 bits), Expect = 2.6e-26, Sum P(3) = 2.6e-26
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 2 VALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQIGQEV 42
+ L + VKL +IDEVH L RG +EA+V+R ++ IG V
Sbjct: 367 IRLMQPVKLFLIDEVHTLKEARGATLEAVVSR-MKSIGSNV 406
Score = 71 (30.1 bits), Expect = 3.3e-15, Sum P(3) = 3.3e-15
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 104 HGCYVHIGILDVLQIFGRAGRPQYNTS 130
+GC L+V+Q+ GRAGRPQ++ S
Sbjct: 566 YGCGQEYSDLEVMQMLGRAGRPQFDDS 592
Score = 53 (23.7 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 689 QYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEI 733
Q E F+H N + I C H ++V L G +++AA +
Sbjct: 809 QQEKSTVFAHVNRVIRCIIDCQAHLKDSVTLCNALGLARSLAARV 853
>UNIPROTKB|H9L1I7 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AADN02044729 EMBL:AADN02044730
Ensembl:ENSGALT00000035545 OMA:PRKERIM Uniprot:H9L1I7
Length = 771
Score = 462 (167.7 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 119/309 (38%), Positives = 173/309 (55%)
Query: 650 GSVVQHSMSFKHLIVPELHP-P---HTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQ 705
GS + ++ + VP L P P L+ ++ LP A Q +E F N IQ++
Sbjct: 433 GSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYA--QAGFEG---FKTLNRIQSK 487
Query: 706 IFHCLYHTDNNVLLGAPTGSGKTIAAEITCFR-VFKQC--------PEAKVVYIAPLKAL 756
++ +D N+LL APTG+GKT A + R + K E K++YIAP+++L
Sbjct: 488 LYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDEFKIIYIAPMRSL 547
Query: 757 VKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYV 816
V+E V + + A V ELTGD + IS+ +IV TPEKWD ++R R Y
Sbjct: 548 VQEMVGSFGKRL-ATYGINVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYT 606
Query: 817 QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLN 876
Q V L+I+DEIHLL +DRGPVLE +V+R T+ +VRLVGLS L N +D+AT+L
Sbjct: 607 QLVRLVILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYEDVATFLR 666
Query: 877 ITK-QGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVS 935
+ +G++ F S RPVPLE G K+ R MN+ +Y I +H+ + V++FV
Sbjct: 667 VDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVH 726
Query: 936 SRRQTRLTA 944
SR++T TA
Sbjct: 727 SRKETGKTA 735
Score = 170 (64.9 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 37/72 (51%), Positives = 51/72 (70%)
Query: 28 EALVA-RTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIA 86
E LV+ L + Q F+G K+LNRIQS +Y A ++ENLL+CAPTGAGKTNVA++ +
Sbjct: 459 EQLVSVEKLPKYAQAGFEGFKTLNRIQSKLYRAALESDENLLLCAPTGAGKTNVALMCML 518
Query: 87 HQIKQHISQ-GT 97
+I +HI+ GT
Sbjct: 519 REIGKHINMDGT 530
Score = 129 (50.5 bits), Expect = 0.00024, P = 0.00024
Identities = 23/34 (67%), Positives = 31/34 (91%)
Query: 5 TELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
T+LV+L+I+DE+HLLH DRGPV+E+LVAR +R I
Sbjct: 606 TQLVRLVILDEIHLLHDDRGPVLESLVARAIRNI 639
>RGD|1584010 [details] [associations]
symbol:Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1584010 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 IPI:IPI00766186
Ensembl:ENSRNOT00000033794 UCSC:RGD:1584010 Uniprot:F1LWY1
Length = 954
Score = 464 (168.4 bits), Expect = 1.9e-40, P = 1.9e-40
Identities = 105/279 (37%), Positives = 166/279 (59%)
Query: 689 QYESLYK-FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---- 743
++ S++K F +FN IQ++ F L +TD N ++ APTGSGKT+ E+ R+ + P
Sbjct: 1 KFRSVFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEAPLPWL 60
Query: 744 EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGD-VTPDIQAISSASVIVTTPEK 802
KVVY+AP+KAL +R DWK KF + ELTGD V D+ I A++I+TTPEK
Sbjct: 61 NMKVVYMAPIKALCSQRFDDWKEKF-GPIGLTCKELTGDTVMDDLFEIQHANIIMTTPEK 119
Query: 803 WDGVSRSWQNRNYVQSVALIIIDEIHLL-GEDRGPVLEVIVSRVNFISSYTK--RN---- 855
WD ++R W++ +++Q V L +IDE+H++ E+RGP LEV+VSR+ + S +K N
Sbjct: 120 WDSMTRKWRDNSFIQLVRLFLIDEVHVIKDENRGPTLEVVVSRMKTVQSLSKTLENASPA 179
Query: 856 -VRLVGLSTALANAKDLATWLNITKQGMYNFR--PSVRPVPLEVHISGFPGKQYCPRMA- 911
VR V +S + NA+D+A WL+ ++ + S RPV L+ + GFP
Sbjct: 180 PVRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPSSSNQTEFKF 239
Query: 912 --KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLI 948
+N +Y+ I+ +S +KP ++F ++R+ + A L+
Sbjct: 240 DLALNYKVYSVIRTYSDQKPTLVFCATRKGVQQAASVLV 278
Score = 209 (78.6 bits), Expect = 6.5e-29, Sum P(3) = 6.5e-29
Identities = 84/329 (25%), Positives = 147/329 (44%)
Query: 255 NLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTT 314
+L ++LNAE+ L TI ++ A+ W+ + L++R NP YG + D + +
Sbjct: 425 HLIEHLNAEIVLHTITDVSIALDWIRSTLLYIRALKNPSHYGF-ISGLNKDGIEAKLQEL 483
Query: 315 LIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTK-VLDDVGI 373
++N L +I+ + + T+ GR + YYI ++ F K L D +
Sbjct: 484 CLKNLKD-LSSLDLIKMD-EDLNFRSTEAGRLMAWYYITFETVKKFCAISGKETLSD--L 539
Query: 374 LSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIR----GGSENVHGKVNILLQTLLSR 429
+SMIS EF +++R E L+ L ++ I IR G + KVN L+Q L
Sbjct: 540 ISMISSCSEFLDVQLRISEKRTLNTLNKDPNRITIRFPMEGRIKTREMKVNCLIQAQLGC 599
Query: 430 GRVNSFSLVSDLEYVNQNVIRIIRALFE-ITLHRNNAIMAARFLKFALMFETKQWPHETP 488
+ F+L D + +N RI + L + +T + + A F+ K W E
Sbjct: 600 IPIQDFALTQDTSKIFRNGSRIAKWLSDFVTAQEQKFAVLLNSVILAKCFKCKLW--ENS 657
Query: 489 LRQIKLVTNRGYQSPILKPDILNKIEQRGLT-VEDLREMPAKEISYML-RDPHVGDKVKQ 546
K + G + N + GLT + + E A+E+ +L R P G ++K+
Sbjct: 658 QHVSKQLDKIGIS-------LSNTMVNAGLTSFKKIEEANARELELILNRHPPFGTQIKE 710
Query: 547 CAWEIPLLEIESKLLP-ITRTVLKIHLTI 574
+P E+E++ + + T +I +TI
Sbjct: 711 AVMYLPKYELEAEQIARYSDTKAEILVTI 739
Score = 151 (58.2 bits), Expect = 6.5e-29, Sum P(3) = 6.5e-29
Identities = 35/104 (33%), Positives = 57/104 (54%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
K T Y G + D+LQ+ GRAGRPQ++T+ A I+T Y+ +L
Sbjct: 360 KSTMHYTG--GAFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTREKYVQMLACNDT 417
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
+ES+ +L ++LNAE+ L TI ++ A+ W+ ++YI + N
Sbjct: 418 VESSLHRHLIEHLNAEIVLHTITDVSIALDWIRSTLLYIRALKN 461
Score = 104 (41.7 bits), Expect = 6.5e-29, Sum P(3) = 6.5e-29
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQ 91
+ VFK N IQS +D +T+ N +ICAPTG+GKT V L I + +
Sbjct: 3 RSVFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLME 54
Score = 78 (32.5 bits), Expect = 3.2e-26, Sum P(3) = 3.2e-26
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 1 DVALTELVKLLIIDEVHLLHGD-RGPVIEALVAR 33
D + +LV+L +IDEVH++ + RGP +E +V+R
Sbjct: 129 DNSFIQLVRLFLIDEVHVIKDENRGPTLEVVVSR 162
Score = 69 (29.3 bits), Expect = 1.9e-20, Sum P(3) = 1.9e-20
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 105 GCYVHIGILDVLQIFGRAGRPQYNTS 130
G + D+LQ+ GRAGRPQ++T+
Sbjct: 368 GAFEEYSETDILQMIGRAGRPQFDTT 393
Score = 46 (21.3 bits), Expect = 6.6e-12, Sum P(3) = 6.6e-12
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 402 ECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSF 435
+CC+I + E V+ L L SR V+SF
Sbjct: 890 DCCKIGVAQKPEAKVSAVSSYLSDLKSRDAVSSF 923
Score = 43 (20.2 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 843 SRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGM-YNFR 886
S FIS K + L N KDL++ L++ K NFR
Sbjct: 463 SHYGFISGLNKDGIEAKLQELCLKNLKDLSS-LDLIKMDEDLNFR 506
>UNIPROTKB|F1S4E9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:CU179709
Ensembl:ENSSSCT00000007570 Uniprot:F1S4E9
Length = 1438
Score = 444 (161.4 bits), Expect = 6.8e-38, P = 6.8e-38
Identities = 122/361 (33%), Positives = 191/361 (52%)
Query: 645 SDRYLGSVVQHSMSFKHLIVPELHPPHT--NLLE--LQPLPVSALQQPQYESLYK-FSHF 699
SD + S ++ + FK PH ++E L L ++ S++K F +F
Sbjct: 225 SDTFSASKIREGI-FKAPSFSVASQPHEVQGIIENGLDSLKAVTEIPAKFRSVFKEFPYF 283
Query: 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP----EAKVVYIAPLKA 755
N IQ++ F L +TD NV++ APTGSGKT+ E+ R+ + P K+VY+AP+KA
Sbjct: 284 NYIQSKAFDDLLYTDRNVVVCAPTGSGKTVMFELAITRLLMEVPLPWSNIKIVYMAPIKA 343
Query: 756 LVKERVADWKVKFEARLKKKVVELTGD-VTPDIQAISSASVIVTTPEKWDGVSRSWQNRN 814
L +R DWK KF + ELTGD V D+ I A +I+TTPEKWD ++R W++ +
Sbjct: 344 LCSQRFDDWKEKF-GPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNS 402
Query: 815 YVQSVALIIIDEIHLL-GEDRGPVLEVIVSR---VNFISSYTK--RNV---RLVGLSTAL 865
VQ V L +IDE+H++ E+RGP LEV+VSR V F+S + RN+ R V +S +
Sbjct: 403 LVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQFLSHAVENPRNIIPMRFVAVSATI 462
Query: 866 ANAKDLATWLNITKQGMYNFRPSV--RPVPLEVHISGFPGKQYCPRMA---KMNKPIYTA 920
NA+D+A WL+ ++ + RPV L + GFP +N I +
Sbjct: 463 PNAEDIAEWLSDGERSAICLKMDEKHRPVKLRKVVLGFPCSNNQTEFKFDLTLNYKIASV 522
Query: 921 IKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSNL 980
++ +S +KP ++F ++R+ + A +IL + M V + +I+DS L
Sbjct: 523 VQTYSDQKPTLVFCATRKGVQQAA----SILVKDAKFIMTVEQKQ-RLHKCAYSIRDSKL 577
Query: 981 K 981
+
Sbjct: 578 R 578
Score = 222 (83.2 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 103/422 (24%), Positives = 185/422 (43%)
Query: 255 NLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTT 314
+L ++LNAE+ L TI +++ A+ W+ + L++R NP YG + + D I+ +
Sbjct: 697 HLIEHLNAEIVLHTITDVNIALEWIRSTLLYIRALKNPSHYGFAS---GLNKDGIESK-- 751
Query: 315 LIENAAQILDKAHMIRFNMRTRDLAI--TDLGRTASNYYIKHNDIELF-TEHMTKVLDDV 371
L E + L+ + D+ T+ GR + YY+ ++ F T + L D
Sbjct: 752 LQELCLKNLNDLSSLDLIKMDEDINFKPTEAGRLMAWYYVTFETVKKFCTISGKETLSD- 810
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIR----GGSENVHGKVNILLQTLL 427
+++MI+ EF +++R E L+ L ++ I IR G + KVN L+Q L
Sbjct: 811 -LVTMIASCKEFLDVQLRINEKKTLNTLNKDPNRITIRFPMEGKIKTREMKVNCLIQAQL 869
Query: 428 SRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHET 487
+ F+L D + +N RI R L + + + L A F K W E
Sbjct: 870 GCIPIQDFALTQDTSKIFRNGSRITRWLSDFVAVQEKFAVLLNSLILAKCFRCKLW--EN 927
Query: 488 PLRQIKLVTNRGYQSPILKPDILNKIEQRGLT-VEDLREMPAKEISYML-RDPHVGDKVK 545
L K + G + N + GLT + + E A+E+ +L R P G ++K
Sbjct: 928 SLHVSKQLEKIGIT-------LSNAMVNAGLTSFKKIEETDARELELILNRHPPFGTQIK 980
Query: 546 QCAWEIPLLEIE-SKLLPITRTVLKIHLT-IKANFSWNDKNKSTYAEPFWIW--VEDPDS 601
+ +P E+E ++ + T ++ +T I NF + K T + ++ + D D+
Sbjct: 981 ETVMCLPKYELEVEQIARYSDTTAEVLVTVILRNFE-PLQTKRTAPDSHYVTLIIGDADN 1039
Query: 602 DFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYL-IRAMSDRYLGSVVQHSMSFK 660
I+ + V+ KS + I + L ++ L I +S Y+G +Q +
Sbjct: 1040 QLIFKHKIM----DSVLLKSG-NWAKKIDVKRALKSEDLSINLISSEYVGLDIQQKFTVF 1094
Query: 661 HL 662
+L
Sbjct: 1095 YL 1096
Score = 152 (58.6 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 32/94 (34%), Positives = 55/94 (58%)
Query: 165 GCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLA 224
G + D+LQ+ GRAGRPQ++T+ A I+T Y+ +L +ES+ +L
Sbjct: 640 GMFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLI 699
Query: 225 DNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
++LNAE+ L TI +++ A+ W+ ++YI + N
Sbjct: 700 EHLNAEIVLHTITDVNIALEWIRSTLLYIRALKN 733
Score = 101 (40.6 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQ 91
+ VFK N IQS +D +T+ N+++CAPTG+GKT + L I + +
Sbjct: 274 RSVFKEFPYFNYIQSKAFDDLLYTDRNVVVCAPTGSGKTVMFELAITRLLME 325
Score = 82 (33.9 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 1 DVALTELVKLLIIDEVHLLHGD-RGPVIEALVAR 33
D +L +LV+L +IDEVH++ + RGP +E +V+R
Sbjct: 400 DNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSR 433
Score = 68 (29.0 bits), Expect = 9.8e-21, Sum P(3) = 9.8e-21
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 105 GCYVHIGILDVLQIFGRAGRPQYNTS 130
G + D+LQ+ GRAGRPQ++T+
Sbjct: 640 GMFEEYSETDILQMIGRAGRPQFDTT 665
Score = 38 (18.4 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 402 ECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLE 442
+CC+ + E ++ L L +R V+S V L+
Sbjct: 1157 DCCKTGVAQKPEMKESTISSYLSDLRNRNAVSSLPPVKRLK 1197
Score = 37 (18.1 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 843 SRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGM-YNFRPS 888
S F S K + L N DL++ L++ K NF+P+
Sbjct: 735 SHYGFASGLNKDGIESKLQELCLKNLNDLSS-LDLIKMDEDINFKPT 780
>UNIPROTKB|A2PYH4 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0008026 KO:K15271
EMBL:AB204867 EMBL:AK094079 EMBL:BX323048 EMBL:AC098691
IPI:IPI00374013 IPI:IPI00852603 RefSeq:NP_001017975.3
UniGene:Hs.454818 ProteinModelPortal:A2PYH4 SMR:A2PYH4
STRING:A2PYH4 PhosphoSite:A2PYH4 PaxDb:A2PYH4 PRIDE:A2PYH4
Ensembl:ENST00000294696 Ensembl:ENST00000370425 GeneID:164045
KEGG:hsa:164045 UCSC:uc001doa.4 CTD:164045 GeneCards:GC01M091726
HGNC:HGNC:20193 HPA:HPA035557 neXtProt:NX_A2PYH4
PharmGKB:PA142671690 HOGENOM:HOG000293238 HOVERGEN:HBG103774
InParanoid:A2PYH4 OMA:EADEMKS OrthoDB:EOG44XJHC ChiTaRS:HFM1
GenomeRNAi:164045 NextBio:88429 ArrayExpress:A2PYH4 Bgee:A2PYH4
CleanEx:HS_HFM1 Genevestigator:A2PYH4 Uniprot:A2PYH4
Length = 1435
Score = 442 (160.7 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 104/280 (37%), Positives = 163/280 (58%)
Query: 689 QYESLYK-FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---- 743
++ S++K F +FN IQ++ F L +TD N ++ APTGSGKT+ E+ R+ + P
Sbjct: 270 KFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWL 329
Query: 744 EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGD-VTPDIQAISSASVIVTTPEK 802
K+VY+AP+KAL +R DWK KF + ELTGD V D+ I A +I+TTPEK
Sbjct: 330 NIKIVYMAPIKALCSQRFDDWKEKF-GPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEK 388
Query: 803 WDGVSRSWQNRNYVQSVALIIIDEIHLL-GEDRGPVLEVIVSRVNFISSY--TKRN---- 855
WD ++R W++ + VQ V L +IDE+H++ E+RGP LEV+VSR+ + S T +N
Sbjct: 389 WDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTA 448
Query: 856 --VRLVGLSTALANAKDLATWLNITKQGMYNFR--PSVRPVPLEVHISGFPGKQYCPRMA 911
+R V +S + NA+D+A WL+ ++ + S RPV L+ + GFP
Sbjct: 449 IPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFK 508
Query: 912 ---KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLI 948
+N I + I+ +S +KP ++F ++R+ + A L+
Sbjct: 509 FDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVLV 548
Score = 217 (81.4 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 105/423 (24%), Positives = 188/423 (44%)
Query: 255 NLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTT 314
+L ++LNAE+ L TI +++ AV W+ + L++R NP YG + + D + +
Sbjct: 695 HLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSHYGFA-SGLNKDGIEAKLQEL 753
Query: 315 LIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELF-TEHMTKVLDDVGI 373
++N L +I+ + + T+ GR + YYI ++ F T + L D +
Sbjct: 754 CLKNLND-LSSLDLIKMDEGV-NFKPTEAGRLMAWYYITFETVKKFYTISGKETLSD--L 809
Query: 374 LSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIR----GGSENVHGKVNILLQTLLSR 429
+++I+ EF +++R E L+ L ++ I IR G + KVN L+Q L
Sbjct: 810 VTLIAGCKEFLDIQLRINEKKTLNTLNKDPNRITIRFPMEGRIKTREMKVNCLIQAQLGC 869
Query: 430 GRVNSFSLVSDLEYVNQNVIRIIRALFE-ITLHRNNAIMAARFLKFALMFETKQWPHETP 488
+ F+L D + ++ RI R L + + + L A F K W E
Sbjct: 870 IPIQDFALTQDTAKIFRHGSRITRWLSDFVAAQEKKFAVLLNSLILAKCFRCKLW--ENS 927
Query: 489 LRQIKLVTNRGYQSPILKPDILNKIEQRGLT-VEDLREMPAKEISYML-RDPHVGDKVKQ 546
L K + G + N I GLT + + E A+E+ +L R P G ++K+
Sbjct: 928 LHVSKQLEKIGIT-------LSNAIVNAGLTSFKKIEETDARELELILNRHPPFGTQIKE 980
Query: 547 CAWEIPLLEIESKLLPITR---TVLKIHLT-IKANFSWNDKNKSTYAEPFWIW--VEDPD 600
+P E+ K+ ITR T +I +T I NF + K T ++ ++ + D D
Sbjct: 981 TVMYLPKYEL--KVEQITRYSDTTAEILVTVILRNFE-QLQTKRTASDSHYVTLIIGDAD 1037
Query: 601 SDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYL-IRAMSDRYLGSVVQHSMSF 659
+ +Y + V+ K+ S I + L ++ L I +S ++G +Q ++
Sbjct: 1038 NQVVYLHKI----TDSVLLKAG-SWAKKIAVKRALKSEDLSINLISSEFVGLDIQQKLTV 1092
Query: 660 KHL 662
+L
Sbjct: 1093 FYL 1095
Score = 157 (60.3 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 33/94 (35%), Positives = 57/94 (60%)
Query: 165 GCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLA 224
G + D+LQ+ GRAGRPQ++T+ A I+T + Y+ +L + +ES+ +L
Sbjct: 638 GLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLI 697
Query: 225 DNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
++LNAE+ L TI +++ AV W+ ++YI + N
Sbjct: 698 EHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKN 731
Score = 103 (41.3 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQ 91
+ +FK N IQS +D +T+ N +ICAPTG+GKT V L I + +
Sbjct: 272 RSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLME 323
Score = 87 (35.7 bits), Expect = 6.1e-28, Sum P(3) = 6.1e-28
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 1 DVALTELVKLLIIDEVHLLHGD-RGPVIEALVAR--TLRQIGQ 40
D +L +LV+L +IDEVH++ + RGP +E +V+R T++ + Q
Sbjct: 398 DNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQ 440
Score = 68 (29.0 bits), Expect = 2.1e-20, Sum P(3) = 2.1e-20
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 105 GCYVHIGILDVLQIFGRAGRPQYNTS 130
G + D+LQ+ GRAGRPQ++T+
Sbjct: 638 GLFEEYSETDILQMIGRAGRPQFDTT 663
Score = 40 (19.1 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 843 SRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK--QGMYNFRPS 888
S F S K + L N DL++ L++ K +G+ NF+P+
Sbjct: 733 SHYGFASGLNKDGIEAKLQELCLKNLNDLSS-LDLIKMDEGV-NFKPT 778
>UNIPROTKB|F1MFR1 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:DAAA02007913 EMBL:DAAA02007914
EMBL:DAAA02007915 EMBL:DAAA02007916 IPI:IPI00839892
Ensembl:ENSBTAT00000027789 Uniprot:F1MFR1
Length = 1438
Score = 437 (158.9 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 119/366 (32%), Positives = 191/366 (52%)
Query: 641 IRAMSDRYLGSVVQHSMSFKHLIVPELHPPHT--NLLELQPLPVSALQQ-P-QYESLYK- 695
I +D S ++ + K + P PHT + E + A+ + P ++ S++K
Sbjct: 221 ILTATDTLFASEIREGI-IKAPLFPVASQPHTVQGVTEKSLDSLKAVTEIPAKFRSIFKE 279
Query: 696 FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP----EAKVVYIA 751
F +FN IQ++ F L +TD N ++ APTGSGKT+ E+ R+ + P K+VY+A
Sbjct: 280 FPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMA 339
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGD-VTPDIQAISSASVIVTTPEKWDGVSRSW 810
P+KAL +R DWK KF + ELTGD V D+ I A +I+TTPEKWD ++R W
Sbjct: 340 PIKALCSQRFDDWKKKF-GPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKW 398
Query: 811 QNRNYVQSVALIIIDEIHLL-GEDRGPVLEVIVSR---VNFISSYTKRN-----VRLVGL 861
++ + V V L +IDE+H++ E+RGP LEV+VSR V +S + +R V +
Sbjct: 399 RDNSLVHLVRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQILSPAVENTNSIIPMRFVAV 458
Query: 862 STALANAKDLATWLNITKQGMYNFRPSVR--PVPLEVHISGFPGKQYCPRMA---KMNKP 916
S + NA+D+A WL+ ++ + R PV L + GFP +N
Sbjct: 459 SATIPNAEDIAEWLSDGERSAVCLKMDERHRPVKLRKVVLGFPSSDNQTEFKFDLTLNYK 518
Query: 917 IYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIK 976
I + I+ +S +KP ++F ++R+ + A ++L + M V + +IK
Sbjct: 519 IASIIQTYSDQKPTLVFCATRKGVQQAA----SVLVKDAKFIMTVEQKQ-RLQKCAYSIK 573
Query: 977 DSNLKL 982
DS L++
Sbjct: 574 DSKLRV 579
Score = 224 (83.9 bits), Expect = 7.3e-31, Sum P(3) = 7.3e-31
Identities = 91/366 (24%), Positives = 165/366 (45%)
Query: 255 NLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTT 314
+L ++LNAE+ L TI N++ A+ W+ + L++R NP YG + + D I+ +
Sbjct: 698 HLIEHLNAEIVLHTITNVNIALEWIRSTLLYIRALKNPSHYGFAS---GLNKDGIESK-- 752
Query: 315 LIENAAQILDKAHMIRFNMRTRDLAI--TDLGRTASNYYIKHNDIELF-TEHMTKVLDDV 371
L E + L+ + D+ T+ GR + YYI ++ F T + L D
Sbjct: 753 LQELCLKNLNDLSSLNLIKMDEDINFKPTEAGRLMAWYYITFETVKKFCTMSGKETLSD- 811
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQE----CCEIPIRGGSENVHGKVNILLQTLL 427
+++MI+ EF +++R E L+ L ++ P+ G + KVN L+Q L
Sbjct: 812 -LVTMIASCKEFLDVQLRINEKKALNTLNKDPNRTTIRFPMEGRIKTREMKVNCLIQAQL 870
Query: 428 SRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQW---P 484
V F+L D + +N RI R L + + + L A F K W P
Sbjct: 871 GCIPVQDFALTQDTAKIFRNGSRITRWLSDFVATQEKFAVLLNSLILAKCFRCKLWENSP 930
Query: 485 HETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLT-VEDLREMPAKEISYML-RDPHVGD 542
H + +Q++ + G + N + GLT + + E A+E+ +L R P G
Sbjct: 931 HVS--KQLEKI---GIT-------LSNAMVNAGLTSFKKIEETDARELELILNRHPPFGT 978
Query: 543 KVKQCAWEIPLLEIE-SKLLPITRTVLKIHLT-IKANFSW-NDKNKSTYAEPFWIWVEDP 599
++K+ +P E+E ++ + T+ +I +T I NF K ++ + + + D
Sbjct: 979 QIKETVMYLPKYELEVEQITRYSDTMAEILVTVILRNFEQLQTKRTASNSHYVTLIIGDA 1038
Query: 600 DSDFIY 605
D+ ++
Sbjct: 1039 DNQLVF 1044
Score = 158 (60.7 bits), Expect = 7.3e-31, Sum P(3) = 7.3e-31
Identities = 34/94 (36%), Positives = 55/94 (58%)
Query: 165 GCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLA 224
G + D+LQ+ GRAGRPQ++T+ A I+T Y+ +L IES+ +L
Sbjct: 641 GMFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTKEKYIQMLACSDTIESSLHRHLI 700
Query: 225 DNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
++LNAE+ L TI N++ A+ W+ ++YI + N
Sbjct: 701 EHLNAEIVLHTITNVNIALEWIRSTLLYIRALKN 734
Score = 107 (42.7 bits), Expect = 7.3e-31, Sum P(3) = 7.3e-31
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 12 IIDEVHLLHGDRGPVIEALVART-LRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLIC 70
+ + H + G +++L A T + + +FK N IQS +D +T+ N +IC
Sbjct: 245 VASQPHTVQGVTEKSLDSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVIC 304
Query: 71 APTGAGKTNVAMLTIAHQIKQ 91
APTG+GKT V L I + +
Sbjct: 305 APTGSGKTVVFELAITRLLME 325
Score = 82 (33.9 bits), Expect = 2.8e-28, Sum P(3) = 2.8e-28
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 1 DVALTELVKLLIIDEVHLLHGD-RGPVIEALVARTLRQIGQEVFKGVKSLNRI 52
D +L LV+L +IDEVH++ + RGP +E +V+R ++ + Q + V++ N I
Sbjct: 400 DNSLVHLVRLFLIDEVHVVKDENRGPTLEVVVSR-MKTV-QILSPAVENTNSI 450
Score = 68 (29.0 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 105 GCYVHIGILDVLQIFGRAGRPQYNTS 130
G + D+LQ+ GRAGRPQ++T+
Sbjct: 641 GMFEEYSETDILQMIGRAGRPQFDTT 666
Score = 45 (20.9 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 402 ECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLE 442
+CC+ + SE ++ L L +R V+S V L+
Sbjct: 1158 DCCKTGVAQKSEGKESTISSYLSDLRNRNAVSSLPPVKRLK 1198
Score = 42 (19.8 bits), Expect = 6.4e-12, Sum P(3) = 6.4e-12
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 843 SRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGM-YNFRPS 888
S F S K + L N DL++ LN+ K NF+P+
Sbjct: 736 SHYGFASGLNKDGIESKLQELCLKNLNDLSS-LNLIKMDEDINFKPT 781
>UNIPROTKB|E2RA34 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 CTD:164045
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823 RefSeq:XP_537081.3
Ensembl:ENSCAFT00000032148 GeneID:479956 KEGG:cfa:479956
Uniprot:E2RA34
Length = 1437
Score = 433 (157.5 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 103/279 (36%), Positives = 161/279 (57%)
Query: 689 QYESLYK-FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---- 743
++ S++K F +FN IQ++ F L +TD N ++ APTGSGKT+ E+ R+ + P
Sbjct: 272 KFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWS 331
Query: 744 EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGD-VTPDIQAISSASVIVTTPEK 802
K+VY+AP+KAL +R DWK KF + ELTGD V D+ I A +I+TTPEK
Sbjct: 332 NIKIVYMAPIKALCSQRFDDWKEKF-GPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEK 390
Query: 803 WDGVSRSWQNRNYVQSVALIIIDEIHLL-GEDRGPVLEVIVSRVNFISSYT--KRN---- 855
WD ++R W++ + VQ V L +IDE+H++ E+RGP LEV+VSR+ + S + N
Sbjct: 391 WDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQSLSPPSENSTVI 450
Query: 856 -VRLVGLSTALANAKDLATWLNITKQGMYNFRPSV--RPVPLEVHISGFP-GKQYCPRM- 910
+R V +S + NA+D+A WL+ ++ + RPV L+ + GFP G
Sbjct: 451 PMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDEKHRPVKLQKVVLGFPCGSNQTEFKF 510
Query: 911 -AKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLI 948
+N I I+ +S +KP ++F ++R+ + A L+
Sbjct: 511 DLTLNYKIAGVIRTYSDQKPTLVFCATRKGVQQAASVLV 549
Score = 220 (82.5 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 87/362 (24%), Positives = 162/362 (44%)
Query: 255 NLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTT 314
+L ++LNAE+ L TI +++ A+ W+ + L++R NP YG + + D + +
Sbjct: 696 HLIEHLNAEIVLHTITDVNIALEWIRSTLLYIRALKNPSHYGFA-SGLNKDGIEAKLQEL 754
Query: 315 LIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTK--VLDDVG 372
++N L +IR + + T+ GR + YYI ++ F K +LD
Sbjct: 755 CLKNLHD-LSSLDLIRMDEDV-NFKPTEAGRLMAWYYITFETVKKFCTISGKETLLD--- 809
Query: 373 ILSMISQAHEFEQLKVRDEELHELDNLTQE----CCEIPIRGGSENVHGKVNILLQTLLS 428
+++MIS EF +++R E L+ L ++ P+ G + K+N L+Q L
Sbjct: 810 LVTMISSCKEFVDVQLRINEKKILNTLNKDPNRVTIRFPMEGRIKTREMKINCLIQAQLG 869
Query: 429 RGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETP 488
+ F+L D+ + +N RI R L + + + L A F K W E
Sbjct: 870 CIPIQDFALTQDISKIFRNGSRITRWLSDFVAVQEKFAILLNSLILAKCFRCKLW--ENS 927
Query: 489 LRQIKLVTNRGYQSPILKPDILNKIEQRGLT-VEDLREMPAKEISYML-RDPHVGDKVKQ 546
L K + G + N + GLT + + E A+E+ +L R P G ++K+
Sbjct: 928 LHVSKQLEKIGIT-------LSNAMVNAGLTSFKKIEETDARELELILNRHPPFGTQIKE 980
Query: 547 CAWEIPLLEIE-SKLLPITRTVLKIHLTI-KANFSWNDKNKSTYAEPF-WIWVEDPDSDF 603
+P E+E ++ + T+ +I +TI NF +++ + + + D D+
Sbjct: 981 TVMYLPKYEVEVEQIARYSDTMAEILVTIILRNFEQLQARRTSPDSHYVTLIIGDADNQL 1040
Query: 604 IY 605
++
Sbjct: 1041 VF 1042
Score = 152 (58.6 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 32/94 (34%), Positives = 55/94 (58%)
Query: 165 GCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLA 224
G + D+LQ+ GRAGRPQ++T+ A I+T Y+ +L +ES+ +L
Sbjct: 639 GMFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLI 698
Query: 225 DNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
++LNAE+ L TI +++ A+ W+ ++YI + N
Sbjct: 699 EHLNAEIVLHTITDVNIALEWIRSTLLYIRALKN 732
Score = 103 (41.3 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQ 91
+ +FK N IQS +D +T+ N +ICAPTG+GKT V L I + +
Sbjct: 274 RSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLME 325
Score = 82 (33.9 bits), Expect = 3.1e-27, Sum P(3) = 3.1e-27
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 1 DVALTELVKLLIIDEVHLLHGD-RGPVIEALVAR 33
D +L +LV+L +IDEVH++ + RGP +E +V+R
Sbjct: 400 DNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSR 433
Score = 68 (29.0 bits), Expect = 9.9e-21, Sum P(3) = 9.9e-21
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 105 GCYVHIGILDVLQIFGRAGRPQYNTS 130
G + D+LQ+ GRAGRPQ++T+
Sbjct: 639 GMFEEYSETDILQMIGRAGRPQFDTT 664
Score = 43 (20.2 bits), Expect = 5.4e-11, Sum P(3) = 5.4e-11
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 402 ECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLE 442
+CC+ + SE ++ L L +R V+S V L+
Sbjct: 1156 DCCKTGVAQKSETKEPTISSYLSDLRNRNAVSSLPPVKRLK 1196
>UNIPROTKB|E2R5U9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823
Ensembl:ENSCAFT00000035369 Uniprot:E2R5U9
Length = 1466
Score = 433 (157.5 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 103/279 (36%), Positives = 161/279 (57%)
Query: 689 QYESLYK-FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---- 743
++ S++K F +FN IQ++ F L +TD N ++ APTGSGKT+ E+ R+ + P
Sbjct: 272 KFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWS 331
Query: 744 EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGD-VTPDIQAISSASVIVTTPEK 802
K+VY+AP+KAL +R DWK KF + ELTGD V D+ I A +I+TTPEK
Sbjct: 332 NIKIVYMAPIKALCSQRFDDWKEKF-GPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEK 390
Query: 803 WDGVSRSWQNRNYVQSVALIIIDEIHLL-GEDRGPVLEVIVSRVNFISSYT--KRN---- 855
WD ++R W++ + VQ V L +IDE+H++ E+RGP LEV+VSR+ + S + N
Sbjct: 391 WDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQSLSPPSENSTVI 450
Query: 856 -VRLVGLSTALANAKDLATWLNITKQGMYNFRPSV--RPVPLEVHISGFP-GKQYCPRM- 910
+R V +S + NA+D+A WL+ ++ + RPV L+ + GFP G
Sbjct: 451 PMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDEKHRPVKLQKVVLGFPCGSNQTEFKF 510
Query: 911 -AKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLI 948
+N I I+ +S +KP ++F ++R+ + A L+
Sbjct: 511 DLTLNYKIAGVIRTYSDQKPTLVFCATRKGVQQAASVLV 549
Score = 220 (82.5 bits), Expect = 2.3e-29, Sum P(3) = 2.3e-29
Identities = 87/362 (24%), Positives = 162/362 (44%)
Query: 255 NLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTT 314
+L ++LNAE+ L TI +++ A+ W+ + L++R NP YG + + D + +
Sbjct: 696 HLIEHLNAEIVLHTITDVNIALEWIRSTLLYIRALKNPSHYGFA-SGLNKDGIEAKLQEL 754
Query: 315 LIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTK--VLDDVG 372
++N L +IR + + T+ GR + YYI ++ F K +LD
Sbjct: 755 CLKNLHD-LSSLDLIRMDEDV-NFKPTEAGRLMAWYYITFETVKKFCTISGKETLLD--- 809
Query: 373 ILSMISQAHEFEQLKVRDEELHELDNLTQE----CCEIPIRGGSENVHGKVNILLQTLLS 428
+++MIS EF +++R E L+ L ++ P+ G + K+N L+Q L
Sbjct: 810 LVTMISSCKEFVDVQLRINEKKILNTLNKDPNRVTIRFPMEGRIKTREMKINCLIQAQLG 869
Query: 429 RGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETP 488
+ F+L D+ + +N RI R L + + + L A F K W E
Sbjct: 870 CIPIQDFALTQDISKIFRNGSRITRWLSDFVAVQEKFAILLNSLILAKCFRCKLW--ENS 927
Query: 489 LRQIKLVTNRGYQSPILKPDILNKIEQRGLT-VEDLREMPAKEISYML-RDPHVGDKVKQ 546
L K + G + N + GLT + + E A+E+ +L R P G ++K+
Sbjct: 928 LHVSKQLEKIGIT-------LSNAMVNAGLTSFKKIEETDARELELILNRHPPFGTQIKE 980
Query: 547 CAWEIPLLEIE-SKLLPITRTVLKIHLTI-KANFSWNDKNKSTYAEPF-WIWVEDPDSDF 603
+P E+E ++ + T+ +I +TI NF +++ + + + D D+
Sbjct: 981 TVMYLPKYEVEVEQIARYSDTMAEILVTIILRNFEQLQARRTSPDSHYVTLIIGDADNQL 1040
Query: 604 IY 605
++
Sbjct: 1041 VF 1042
Score = 152 (58.6 bits), Expect = 2.3e-29, Sum P(3) = 2.3e-29
Identities = 32/94 (34%), Positives = 55/94 (58%)
Query: 165 GCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLA 224
G + D+LQ+ GRAGRPQ++T+ A I+T Y+ +L +ES+ +L
Sbjct: 639 GMFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLI 698
Query: 225 DNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
++LNAE+ L TI +++ A+ W+ ++YI + N
Sbjct: 699 EHLNAEIVLHTITDVNIALEWIRSTLLYIRALKN 732
Score = 103 (41.3 bits), Expect = 2.3e-29, Sum P(3) = 2.3e-29
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQ 91
+ +FK N IQS +D +T+ N +ICAPTG+GKT V L I + +
Sbjct: 274 RSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLME 325
Score = 82 (33.9 bits), Expect = 3.4e-27, Sum P(3) = 3.4e-27
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 1 DVALTELVKLLIIDEVHLLHGD-RGPVIEALVAR 33
D +L +LV+L +IDEVH++ + RGP +E +V+R
Sbjct: 400 DNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSR 433
Score = 68 (29.0 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 105 GCYVHIGILDVLQIFGRAGRPQYNTS 130
G + D+LQ+ GRAGRPQ++T+
Sbjct: 639 GMFEEYSETDILQMIGRAGRPQFDTT 664
Score = 43 (20.2 bits), Expect = 5.8e-11, Sum P(3) = 5.8e-11
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 402 ECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLE 442
+CC+ + SE ++ L L +R V+S V L+
Sbjct: 1156 DCCKTGVAQKSETKEPTISSYLSDLRNRNAVSSLPPVKRLK 1196
>UNIPROTKB|G4N3Z7 [details] [associations]
symbol:MGG_05900 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003583 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00278 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:CM001233 GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 RefSeq:XP_003711726.1
ProteinModelPortal:G4N3Z7 EnsemblFungi:MGG_05900T0 GeneID:2684075
KEGG:mgr:MGG_05900 Uniprot:G4N3Z7
Length = 1508
Score = 425 (154.7 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 116/373 (31%), Positives = 190/373 (50%)
Query: 605 YHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVV--QHSMSFKHL 662
+ ++Y L S S + + P P+ + + + ++ S Q + +HL
Sbjct: 161 FENQYALNSSSSPAVSSPTTRLSKRPHGHPVMSVHTSQEVARPAQPSTPPSQTEQTVRHL 220
Query: 663 IVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAP 722
+ PP N + L P L + ++ F FN +Q++ F +Y T++NV++ AP
Sbjct: 221 DLGHA-PPIANGVHLIS-PRDVLPD-RLRVVFPFELFNAVQSKSFASVYKTNDNVVVSAP 277
Query: 723 TGSGKTIAAEITCFRVFKQCPEA--KVVYIAPLKALVKERVADWKVKFEARLKKKVVELT 780
TGSGKT E+ ++ Q + KV+Y+AP KAL ER DW+ KF L ELT
Sbjct: 278 TGSGKTAIFELAICKLLSQNTDQNFKVIYVAPTKALCSERARDWESKFR-HLNLTSAELT 336
Query: 781 GDV-TPDIQAISSASVIVTTPEKWDGVSRSWQN-RNYVQSVALIIIDEIHLLGEDRGPVL 838
GD + D+ + +A +IVTTPEK D ++R W++ R + V L++IDE+H L + RG L
Sbjct: 337 GDTFSTDMSRVRAAQIIVTTPEKLDSITRRWEDYRKLLDLVQLVLIDEVHFLKDTRGATL 396
Query: 839 EVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWL------NITKQGMYNFRPSVRPV 892
EV++ R+ S N+R+V LS + N++D+A WL N + F RPV
Sbjct: 397 EVLICRMKTQVS----NIRVVALSATVPNSEDVAKWLGRGNTDNHQPARLETFGEEFRPV 452
Query: 893 PLEVHISGF--PGK--QYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLI 948
L+ H+ G G Q+ P++ + + I HS +KP+++F +R+ LTA L
Sbjct: 453 RLQKHVYGLHCSGNAFQFEPQL---DTKLCEVITTHSQKKPIIVFCFTRKSCELTAKKLS 509
Query: 949 TI-LACETNPKMW 960
+ ++ + K W
Sbjct: 510 QLWISMADDKKPW 522
Score = 169 (64.5 bits), Expect = 3.3e-22, Sum P(4) = 3.3e-22
Identities = 85/322 (26%), Positives = 137/322 (42%)
Query: 255 NLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTT 314
NL +LN+E+ LGTI ++D A WL ++L VR+ NP Y I + L R+
Sbjct: 656 NLIHHLNSEICLGTIRSLDSAKEWLKSTFLGVRLHANPSHYKID-SQSPNGEKLHVGRSI 714
Query: 315 --LIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMT--KVLDD 370
+ E +L +A +IRF+ L T GR+ S Y I+ +++ + T K+ D
Sbjct: 715 DDMCEREINLLQEAKLIRFDNNV--LECTTAGRSMSEYMIRFETMKMILDMPTGTKIHD- 771
Query: 371 VGILSMISQAHEFEQLKVRDEELHELDNLTQECC---EIPIRGGSENVHGKVNILLQTLL 427
IL +++A EF+ L+++ E L + ++ + +E H KV I++Q L
Sbjct: 772 --ILMTLAKAEEFKDLRIKSNERALYRTLNESPFIRYQVRAKDITEAWH-KVFIIVQLDL 828
Query: 428 SRGRVNSFSLVSDLEY-VNQNVIRIIRALFEITLHRNNAIMAARFLKFALM-FETKQWPH 485
G S SD V++N I + +++ + K A ET
Sbjct: 829 GGGDFPSPK--SDTSSSVSKNHFNITKR--QVSDRMKWLLRCVIDCKGAERDSETVNNAL 884
Query: 486 ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGLTVEDLREMPA-KEISYML------RDP 538
E LR I G S +L+ + + R LT + M + +E YM R P
Sbjct: 885 EL-LRSINAGGWEGLPSQLLQVPGIGPVSMRKLTTHGITNMASLREADYMAIENILTRKP 943
Query: 539 HVGDKVKQCAWEIPLLEIESKL 560
G + P L +E L
Sbjct: 944 PFGKNLMDTMKTFPKLGLELSL 965
Score = 151 (58.2 bits), Expect = 3.3e-22, Sum P(4) = 3.3e-22
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT + + G + L+V+Q+ GRAGRPQ++ S A I+T E Y ++ +
Sbjct: 591 KGTMGF--QDGKLLEYSDLEVVQMLGRAGRPQFDNSAVAIILTRSETKARYEAMASGTQV 648
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
+ES NL +LN+E+ LGTI ++D A WL
Sbjct: 649 LESTLHHNLIHHLNSEICLGTIRSLDSAKEWL 680
Score = 97 (39.2 bits), Expect = 3.3e-22, Sum P(4) = 3.3e-22
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 50 NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQ 95
N +QS + + Y TN+N+++ APTG+GKT + L I + Q+ Q
Sbjct: 255 NAVQSKSFASVYKTNDNVVVSAPTGSGKTAIFELAICKLLSQNTDQ 300
Score = 82 (33.9 bits), Expect = 1.1e-20, Sum P(4) = 1.1e-20
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 4 LTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
L +LV+L++IDEVH L RG +E L+ R Q+
Sbjct: 373 LLDLVQLVLIDEVHFLKDTRGATLEVLICRMKTQV 407
Score = 70 (29.7 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 34/137 (24%), Positives = 62/137 (45%)
Query: 35 LRQIGQE-VFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHI 93
L+Q+ Q+ V L + L + AY + +IC + +V + H + I
Sbjct: 536 LQQVMQQGVAFHHAGLEQQDRLAVEKAYLEGKLHVICCTS---TLSVGVNLPCHTV---I 589
Query: 94 SQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFTEHM 153
+GT + + G + L+V+Q+ GRAGRPQ++ S A + ++ + E M
Sbjct: 590 LKGTMGF--QDGKLLEYSDLEVVQMLGRAGRPQFDNS-----AVAIILTRSETKARYEAM 642
Query: 154 TKGTEMYNAK-HGCYVH 169
GT++ + H +H
Sbjct: 643 ASGTQVLESTLHHNLIH 659
Score = 42 (19.8 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 507 PDILNKIEQRGLTVEDLREMPAKEISYML 535
P +L + +G TV E+PA Y L
Sbjct: 47 PPLLGRSSLQGNTVPPTIEVPASSSRYQL 75
Score = 38 (18.4 bits), Expect = 3.3e-22, Sum P(4) = 3.3e-22
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 909 RMAKMNKPIYTAIKQHSPEKPVMI 932
RM+ + KP+ + P P+ I
Sbjct: 1087 RMSSVTKPVKNKNSGNDPTSPIEI 1110
>ZFIN|ZDB-GENE-061207-43 [details] [associations]
symbol:hfm1 "HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-061207-43 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 EMBL:BX927353 EMBL:CABZ01046504
IPI:IPI00897259 ProteinModelPortal:F1QWJ0
Ensembl:ENSDART00000099851 Bgee:F1QWJ0 Uniprot:F1QWJ0
Length = 1049
Score = 361 (132.1 bits), Expect = 3.6e-29, P = 3.6e-29
Identities = 91/276 (32%), Positives = 150/276 (54%)
Query: 689 QYESLYK-FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPE--- 744
++ S++K F +FN +Q+Q + +++ N + APTGSGKT+ E+ R+ + E
Sbjct: 1 KFRSVFKDFPYFNYVQSQALDDVLYSNKNFVACAPTGSGKTVLFELAIVRLLIEASEPWH 60
Query: 745 -AKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVT-PDIQAISSASVIVTTPEK 802
+ VY+AP+KAL ++ +WK KF L K ELTGD D I A +I TT EK
Sbjct: 61 NVRAVYMAPIKALCSQQYDNWKQKF-GPLGLKCKELTGDTEIDDFFEIQDAHLIFTTAEK 119
Query: 803 WDGVSRSWQNRNYVQSVALIIIDEIHLLGED-RGPVLEVIVSRVNFISSY-------TKR 854
WD ++R W++ + S+ L ++DE+H++ + RG LEV+VSR+ + Y +K
Sbjct: 120 WDSMTRRWKDNCLLTSIRLFLVDEVHVVKDKTRGATLEVVVSRMKTMHFYRQAINPESKA 179
Query: 855 NVRLVGLSTALANAKDLATWLNITKQG---MYNFRPSVRPVPLEVHISGFP-GKQYCPRM 910
+VR V +S + N +D++ WL+ + G S RPV L + GFP G
Sbjct: 180 SVRFVAVSATIPNIQDVSEWLS-DESGPATCLEMDESHRPVKLRKVVLGFPCGSNQNEFK 238
Query: 911 --AKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTA 944
+N + I+ +S +KP ++F S+R+ + +A
Sbjct: 239 FDLSLNYKLANIIQTYSDQKPTLVFCSTRKGVQQSA 274
Score = 263 (97.6 bits), Expect = 3.5e-34, Sum P(3) = 3.5e-34
Identities = 103/421 (24%), Positives = 194/421 (46%)
Query: 255 NLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTT 314
NL ++LNAE+ L TI +++ A+ W+ ++L++R NP+ YG EV D T
Sbjct: 425 NLVEHLNAEIVLHTISDVNMALDWIRSTFLYIRALKNPKHYGFP-PEV----DKCGIETK 479
Query: 315 LIENAAQILDKAHMIRFNMRTRDLAI----TDLGRTASNYYIKHNDIELFTEHM-TKVLD 369
L E + L+ + FN+ T D I T+ G+ + Y + + ++ F+ T+ L
Sbjct: 480 LQELCLKNLNS--LASFNLITMDEDINIKPTETGKLMARYCVAFDTVKQFSMVTGTETLP 537
Query: 370 DVGILSMISQAHEFEQLKVRDEELHELDNLTQE----CCEIPIRGGSENVHGKVNILLQT 425
+ ++ MIS+A EF +++R E L+ L ++ PI G ++ KVN L+Q
Sbjct: 538 E--LIEMISKAKEFSDMQLRVNERKTLNTLNKDKNRTTIRFPIEGKIKSNDMKVNCLIQA 595
Query: 426 LLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARF--LKFALMFETKQW 483
L + F L+ D + +N +R+ R L E H + + AA+ L A F K W
Sbjct: 596 QLGCIPIQEFGLIQDTGKIFRNAVRVSRYLTEFLCHHSKSNFAAQLNALILAKCFRAKLW 655
Query: 484 PHETPL-RQIKLVTNRGYQSPILKPDILNKIEQRGLTV-EDLREMPAKEISYML-RDPHV 540
+ + +Q++ + G L ++N GLT + + +E+ ++ R P
Sbjct: 656 ENSPYISKQLERI---GLS---LATALVNA----GLTTFSKIEQTSPRELELIVNRHPPF 705
Query: 541 GDKVKQCAWEIPLLEIESKLLP-ITRTVLKIHLTIKANFSWNDKNKSTYAEPFWIW--VE 597
G+++K+ ++P E+ + +P + + +I T+ N K T + ++ V
Sbjct: 706 GNQIKEAISKLPRCEVSLEQIPRYSPSTAEIVFTVNMNNFKELALKRTAPDHHYVTLIVG 765
Query: 598 DPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSM 657
D D+ ++ + +S ++ S + + S P + I +S Y+G +Q
Sbjct: 766 DCDNKVVFQQK---ISDTLLLKSGSWSKRIEVTRS-PKGEELSIHLISSEYVGLDIQQDY 821
Query: 658 S 658
S
Sbjct: 822 S 822
Score = 157 (60.3 bits), Expect = 3.5e-34, Sum P(3) = 3.5e-34
Identities = 33/85 (38%), Positives = 54/85 (63%)
Query: 174 DVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAEVAL 233
D+LQ+ GRAGRPQ++T+ A I+T + + Y+ L+ IES+ NL ++LNAE+ L
Sbjct: 377 DLLQMIGRAGRPQFDTTATAVIMTRPQTKDKYMHFLSGLDCIESSLHTNLVEHLNAEIVL 436
Query: 234 GTIGNIDEAVRWL---IIYINFVAN 255
TI +++ A+ W+ +YI + N
Sbjct: 437 HTISDVNMALDWIRSTFLYIRALKN 461
Score = 94 (38.1 bits), Expect = 3.5e-34, Sum P(3) = 3.5e-34
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 40 QEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTI 85
+ VFK N +QS D ++N+N + CAPTG+GKT + L I
Sbjct: 3 RSVFKDFPYFNYVQSQALDDVLYSNKNFVACAPTGSGKTVLFELAI 48
Score = 65 (27.9 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 114 DVLQIFGRAGRPQYNTS 130
D+LQ+ GRAGRPQ++T+
Sbjct: 377 DLLQMIGRAGRPQFDTT 393
Score = 58 (25.5 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 1 DVALTELVKLLIIDEVHLLHGD-RGPVIEALVAR 33
D L ++L ++DEVH++ RG +E +V+R
Sbjct: 129 DNCLLTSIRLFLVDEVHVVKDKTRGATLEVVVSR 162
Score = 44 (20.5 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
Identities = 17/94 (18%), Positives = 41/94 (43%)
Query: 499 GYQSPILKPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIES 558
G + +L+ ++ + ++ + E L E P K + M+ + ++Q +++ +
Sbjct: 898 GVKRTVLQSNVSSYLDNLKMRNEKLCETPVKRLKMMMNNGTAAVSMQQFSYKPKDTHSAA 957
Query: 559 K-LLPITRTVLKIHLTIKANFSWNDKNKSTYAEP 591
K LP +K H T N +++ + +P
Sbjct: 958 KRYLP-NSIYVKGHKTEMLNIIFSEMTFDSQPKP 990
Score = 42 (19.8 bits), Expect = 5.7e-11, Sum P(3) = 5.7e-11
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 486 ETPLRQIKLVTNRG 499
ETP++++K++ N G
Sbjct: 924 ETPVKRLKMMMNNG 937
>SGD|S000003220 [details] [associations]
symbol:HFM1 "Meiosis specific DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0007129 "synapsis" evidence=IGI;IMP]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0007126
"meiosis" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 SGD:S000003220 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0046872 GO:GO:0003677 EMBL:X94357
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0007131 GO:GO:0008026 GO:GO:0007129
GO:GO:0006268 KO:K15271 EMBL:Z72773 EMBL:U22156 RefSeq:NP_011263.2
ProteinModelPortal:P51979 SMR:P51979 DIP:DIP-2604N IntAct:P51979
MINT:MINT-426642 STRING:P51979 PaxDb:P51979 PeptideAtlas:P51979
EnsemblFungi:YGL251C GeneID:852641 KEGG:sce:YGL251C CYGD:YGL251c
GeneTree:ENSGT00550000074822 HOGENOM:HOG000093662 OMA:GNYECNH
OrthoDB:EOG4WWVSR NextBio:971894 Genevestigator:P51979
GermOnline:YGL251C Uniprot:P51979
Length = 1187
Score = 381 (139.2 bits), Expect = 3.1e-31, P = 3.1e-31
Identities = 88/266 (33%), Positives = 147/266 (55%)
Query: 690 YESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPE----A 745
+ ++KF+ FN +Q++ F +Y ++ N ++ +PTGSGKT+ E+ R+ K+
Sbjct: 130 FRGVFKFTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKETNSDTNNT 189
Query: 746 KVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVT-PDIQAISSASVIVTTPEKWD 804
K++YIAP K+L E +W F + + V LT D + + + ++I+TTPEKWD
Sbjct: 190 KIIYIAPTKSLCYEMYKNW---FPSFVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWD 246
Query: 805 GVSRSWQNRNYV-QSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLST 863
++R W + + + + V L+++DEIH + E RG LEVI++R+N + +N+R V LS
Sbjct: 247 LLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLEVILTRMNTMC----QNIRFVALSA 302
Query: 864 ALANAKDLATWLNITKQ---GMYNFRPSVRPVPLEVHISG--FPGKQYCPRMAKMNKPIY 918
+ N +DLA WL + + +F S R V L + G F K + A N +
Sbjct: 303 TVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGYSFNCKNDFQKDAIYNSKLI 362
Query: 919 TAIKQHSPEKPVMIFVSSRRQTRLTA 944
I++H+ +PV+IF +R T TA
Sbjct: 363 EIIEKHADNRPVLIFCPTRASTISTA 388
Score = 176 (67.0 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 72/271 (26%), Positives = 124/271 (45%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT+ +N+ LDVLQ+ GRAGRPQ+ T G A I+T + Y +L+
Sbjct: 468 KGTKSWNSSE--IQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMKQTYENLIHGTDV 525
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVANLA--DNLNAEVALGTI 269
+ES+ NL ++L AE +L T+ +I+ AV WL Y+ F N A +N V+ ++
Sbjct: 526 LESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKNPAAYQEVNRYVSFHSV 585
Query: 270 --GNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAH 327
I++ ++L + V+++I G Y A + +H + E+ Q ++
Sbjct: 586 EDSQINQFCQYLLDTL--VKVKIIDISNG-EYKSTAYGNAMTRHYISF-ESMKQFINAKK 641
Query: 328 MIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLK 387
+ LA ++ S ++HN+ +LF E L L+ Q+ +++
Sbjct: 642 FLSLQGILNLLATSE---EFSVMRVRHNEKKLFKEINLSPLLKYPFLTEKKQSQIIDRVS 698
Query: 388 VRDEEL--HELDNLTQECCEIPIRGGSENVH 416
+ L +EL L E P G+ +H
Sbjct: 699 QKVSLLIQYELGGL-----EFPSYEGASKLH 724
Score = 155 (59.6 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 86/370 (23%), Positives = 162/370 (43%)
Query: 255 NLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTT 314
NL ++L AE +L T+ +I+ AV WL ++ +VR NP +Y EV +
Sbjct: 533 NLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKNPA----AYQEVNRYVSFHSVEDS 588
Query: 315 LIENAAQ-ILDKAHMIRF-NMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVG 372
I Q +LD ++ ++ + T G + +YI ++ F + K L G
Sbjct: 589 QINQFCQYLLDTLVKVKIIDISNGEYKSTAYGNAMTRHYISFESMKQFI-NAKKFLSLQG 647
Query: 373 ILSMISQAHEFEQLKVRDEE--LHELDNLTQECCEIPI---RGGSE---NVHGKVNILLQ 424
IL++++ + EF ++VR E L + NL+ + P + S+ V KV++L+Q
Sbjct: 648 ILNLLATSEEFSVMRVRHNEKKLFKEINLSP-LLKYPFLTEKKQSQIIDRVSQKVSLLIQ 706
Query: 425 TLLSRGRVNSF--------SLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFAL 476
L S+ +LV D V ++ R+++ + + + +++ L
Sbjct: 707 YELGGLEFPSYEGASKLHQTLVQDKFLVFRHCFRLLKCMVDTFIEKSDGTSLKNTLFLLR 766
Query: 477 MFETKQWPHETP--LRQIKLVTNRGYQSPILKPDILNKIEQRGLT-VEDLREMPAKEISY 533
W + TP LRQ+K + G S + ++ + G+T +E++ + +I Y
Sbjct: 767 SLNGHCWEN-TPMVLRQLKTI---GLVS-------VRRLIRHGITNLEEMGHLSDTQIEY 815
Query: 534 MLRDPHVGD--KVKQCAWEIPLLEIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEP 591
L + +G+ K+K +P L I +KL ++ LT K S K+ + +
Sbjct: 816 YL-NLKIGNGIKIKNDISLLPCLNIRTKLENCKIENEELWLTFKVEISATFKSSIWHGQH 874
Query: 592 FWIWVEDPDS 601
+ +E S
Sbjct: 875 LSLDIETEKS 884
Score = 96 (38.9 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 43 FKGV---KSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQ 91
F+GV N++QS + + Y +NEN +I +PTG+GKT + L I IK+
Sbjct: 130 FRGVFKFTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKE 181
Score = 75 (31.5 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 93 ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNT 129
I +GT+ +N+ LDVLQ+ GRAGRPQ+ T
Sbjct: 466 IIKGTKSWNSSE--IQEYSDLDVLQMIGRAGRPQFET 500
Score = 72 (30.4 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 4 LTELVKLLIIDEVHLLHGDRGPVIEALVAR 33
L ELVKL+++DE+H + RG +E ++ R
Sbjct: 258 LFELVKLVLVDEIHTIKEKRGASLEVILTR 287
>UNIPROTKB|H9L351 [details] [associations]
symbol:H9L351 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 GeneTree:ENSGT00640000091272 EMBL:AADN02064073
EMBL:AADN02064074 Ensembl:ENSGALT00000021750
Ensembl:ENSGALT00000036125 Uniprot:H9L351
Length = 254
Score = 261 (96.9 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 48/92 (52%), Positives = 64/92 (69%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
KGT++Y+ + G + +G LD+LQ+ GRAGRPQY+T G +IT H +L +YLSLL Q+P
Sbjct: 89 KGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLP 148
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL 246
IES V+ L D LNAE LG + N +AV WL
Sbjct: 149 IESQMVSKLPDMLNAETVLGNVQNAKDAVNWL 180
Score = 246 (91.7 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 48/107 (44%), Positives = 71/107 (66%)
Query: 246 LIIYINFVANLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATD 305
L I V+ L D LNAE LG + N +AV WL Y+YL++RM +P YGIS+D++ D
Sbjct: 147 LPIESQMVSKLPDMLNAETVLGNVQNAKDAVNWLGYTYLYIRMLRSPTLYGISHDDLKGD 206
Query: 306 PDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYI 352
P L Q R L+ AA +LDK ++++++ +T + +T+LGR AS+YYI
Sbjct: 207 PLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYI 253
Score = 123 (48.4 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 36/123 (29%), Positives = 67/123 (54%)
Query: 49 LNRI-QSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCY 107
+ R+ ++LV D + +L+ T A N+ AH + I +GT++Y+ + G +
Sbjct: 49 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLP----AHTV---IIKGTQVYSPEKGRW 101
Query: 108 VHIGILDVLQIFGRAGRPQYNTSDLGRTASN-----YYIK--HNDIELFTEHMTKGTEMY 160
+G LD+LQ+ GRAGRPQY+T G ++ YY+ + + + ++ ++K +M
Sbjct: 102 TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML 161
Query: 161 NAK 163
NA+
Sbjct: 162 NAE 164
Score = 39 (18.8 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 867 NAKDLATWLNIT 878
NAKD WL T
Sbjct: 172 NAKDAVNWLGYT 183
>UNIPROTKB|F1SU36 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GeneTree:ENSGT00640000091272 EMBL:CU896688
Ensembl:ENSSSCT00000008906 OMA:QSSKKEF Uniprot:F1SU36
Length = 553
Score = 255 (94.8 bits), Expect = 4.5e-29, Sum P(3) = 4.5e-29
Identities = 85/312 (27%), Positives = 156/312 (50%)
Query: 258 DNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIE 317
D+ NAE+ TI N +AV +L++++L+ RM NP Y + + + L H + L+E
Sbjct: 151 DHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL---QGISHRHLSDHLSELVE 207
Query: 318 NAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMI 377
L+++ I D+A +LG A+ YYI + IELF+ + G++ +I
Sbjct: 208 QTLSDLEQSKCISIEDEM-DVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEII 266
Query: 378 SQAHEFEQLKVRDEELHELDNLTQECCE-IPIRGGS---ENVHGKVNILLQTLLSRGRVN 433
S A E+E + +R HE DNL ++ + +P + + + H K N+LLQ LSR +++
Sbjct: 267 SNAAEYENIPIRH---HE-DNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS 322
Query: 434 SFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAA-RFLKFALMFETKQWPHETPLRQI 492
+ L SD E + IR+I+A ++ L N + A ++ A M W ++ L+Q+
Sbjct: 323 A-ELQSDTEEILSKAIRLIQACVDV-LSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQL 380
Query: 493 KLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR--DPHVGDKVKQCAW 549
P + + + +G+ +V D+ EM +E + +L+ D + D + C
Sbjct: 381 ----------PHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLSDSQIADVARFCN- 429
Query: 550 EIPLLEIESKLL 561
P +E+ +++
Sbjct: 430 RYPNIELSYEVV 441
Score = 147 (56.8 bits), Expect = 4.5e-29, Sum P(3) = 4.5e-29
Identities = 35/102 (34%), Positives = 49/102 (48%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T+ YN K YV I DVLQ+ GRA RP + G I+ K + + L +P+E
Sbjct: 83 TQYYNGKIHAYVDYPIYDVLQMVGRANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVE 142
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAV---RWLIIYINFVAN 255
S+ + D+ NAE+ TI N +AV W +Y N
Sbjct: 143 SHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQN 184
Score = 79 (32.9 bits), Expect = 4.8e-22, Sum P(3) = 4.8e-22
Identities = 35/124 (28%), Positives = 57/124 (45%)
Query: 16 VHLLHGDRGPVIEALVARTLRQIGQEVFKGV----KSLNRIQSLVYDTAYHTNE-NLLIC 70
+H D P +E L TL++ + GV + L+ ++ + + + + +++
Sbjct: 7 LHCTEKDLIPYLEKLGDSTLKET---LLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVA 63
Query: 71 APTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTS 130
+ + NVA AH + I T+ YN K YV I DVLQ+ GRA RP +
Sbjct: 64 SRSLCWGMNVA----AHLV---IIMDTQYYNGKIHAYVDYPIYDVLQMVGRANRPLQD-- 114
Query: 131 DLGR 134
D GR
Sbjct: 115 DEGR 118
Score = 48 (22.0 bits), Expect = 4.5e-29, Sum P(3) = 4.5e-29
Identities = 16/79 (20%), Positives = 35/79 (44%)
Query: 905 QYCPRMAKMNKPIYTAIKQHSPEK--PVMIFVSSRRQTRLTAIDLITILACETNPKMWVH 962
++C R + Y + + S PV++ V R+ +T + + + WV
Sbjct: 426 RFCNRYPNIELS-YEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVV 484
Query: 963 TSDAEMDNIVDNIKDSNLK 981
DA+ ++++ +IK L+
Sbjct: 485 IGDAKSNSLI-SIKRLTLQ 502
>UNIPROTKB|A6NGI5 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00973
GO:GO:0008026 EMBL:BX323048 EMBL:AC098691 HGNC:HGNC:20193
HOGENOM:HOG000293238 HOVERGEN:HBG103774 ChiTaRS:HFM1
IPI:IPI00852573 ProteinModelPortal:A6NGI5 STRING:A6NGI5
Ensembl:ENST00000370424 ArrayExpress:A6NGI5 Bgee:A6NGI5
Uniprot:A6NGI5
Length = 1114
Score = 340 (124.7 bits), Expect = 7.5e-27, P = 7.5e-27
Identities = 81/218 (37%), Positives = 126/218 (57%)
Query: 746 KVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGD-VTPDIQAISSASVIVTTPEKWD 804
K+VY+AP+KAL +R DWK KF + ELTGD V D+ I A +I+TTPEKWD
Sbjct: 11 KIVYMAPIKALCSQRFDDWKEKF-GPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWD 69
Query: 805 GVSRSWQNRNYVQSVALIIIDEIHLL-GEDRGPVLEVIVSRVNFISSY--TKRN------ 855
++R W++ + VQ V L +IDE+H++ E+RGP LEV+VSR+ + S T +N
Sbjct: 70 SMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIP 129
Query: 856 VRLVGLSTALANAKDLATWLNITKQGMYNFR--PSVRPVPLEVHISGFPGKQYCPRMA-- 911
+R V +S + NA+D+A WL+ ++ + S RPV L+ + GFP
Sbjct: 130 MRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFKFD 189
Query: 912 -KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLI 948
+N I + I+ +S +KP ++F ++R+ + A L+
Sbjct: 190 LTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVLV 227
Score = 217 (81.4 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 105/423 (24%), Positives = 188/423 (44%)
Query: 255 NLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTT 314
+L ++LNAE+ L TI +++ AV W+ + L++R NP YG + + D + +
Sbjct: 374 HLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSHYGFA-SGLNKDGIEAKLQEL 432
Query: 315 LIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELF-TEHMTKVLDDVGI 373
++N L +I+ + + T+ GR + YYI ++ F T + L D +
Sbjct: 433 CLKNLND-LSSLDLIKMDEGV-NFKPTEAGRLMAWYYITFETVKKFYTISGKETLSD--L 488
Query: 374 LSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIR----GGSENVHGKVNILLQTLLSR 429
+++I+ EF +++R E L+ L ++ I IR G + KVN L+Q L
Sbjct: 489 VTLIAGCKEFLDIQLRINEKKTLNTLNKDPNRITIRFPMEGRIKTREMKVNCLIQAQLGC 548
Query: 430 GRVNSFSLVSDLEYVNQNVIRIIRALFE-ITLHRNNAIMAARFLKFALMFETKQWPHETP 488
+ F+L D + ++ RI R L + + + L A F K W E
Sbjct: 549 IPIQDFALTQDTAKIFRHGSRITRWLSDFVAAQEKKFAVLLNSLILAKCFRCKLW--ENS 606
Query: 489 LRQIKLVTNRGYQSPILKPDILNKIEQRGLT-VEDLREMPAKEISYML-RDPHVGDKVKQ 546
L K + G + N I GLT + + E A+E+ +L R P G ++K+
Sbjct: 607 LHVSKQLEKIGIT-------LSNAIVNAGLTSFKKIEETDARELELILNRHPPFGTQIKE 659
Query: 547 CAWEIPLLEIESKLLPITR---TVLKIHLT-IKANFSWNDKNKSTYAEPFWIW--VEDPD 600
+P E+ K+ ITR T +I +T I NF + K T ++ ++ + D D
Sbjct: 660 TVMYLPKYEL--KVEQITRYSDTTAEILVTVILRNFE-QLQTKRTASDSHYVTLIIGDAD 716
Query: 601 SDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYL-IRAMSDRYLGSVVQHSMSF 659
+ +Y + V+ K+ S I + L ++ L I +S ++G +Q ++
Sbjct: 717 NQVVYLHKI----TDSVLLKAG-SWAKKIAVKRALKSEDLSINLISSEFVGLDIQQKLTV 771
Query: 660 KHL 662
+L
Sbjct: 772 FYL 774
Score = 157 (60.3 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 33/94 (35%), Positives = 57/94 (60%)
Query: 165 GCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLA 224
G + D+LQ+ GRAGRPQ++T+ A I+T + Y+ +L + +ES+ +L
Sbjct: 317 GLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLI 376
Query: 225 DNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
++LNAE+ L TI +++ AV W+ ++YI + N
Sbjct: 377 EHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKN 410
Score = 87 (35.7 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 1 DVALTELVKLLIIDEVHLLHGD-RGPVIEALVAR--TLRQIGQ 40
D +L +LV+L +IDEVH++ + RGP +E +V+R T++ + Q
Sbjct: 77 DNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQ 119
Score = 68 (29.0 bits), Expect = 3.4e-19, Sum P(3) = 3.4e-19
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 105 GCYVHIGILDVLQIFGRAGRPQYNTS 130
G + D+LQ+ GRAGRPQ++T+
Sbjct: 317 GLFEEYSETDILQMIGRAGRPQFDTT 342
Score = 40 (19.1 bits), Expect = 5.7e-10, Sum P(3) = 5.7e-10
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 843 SRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK--QGMYNFRPS 888
S F S K + L N DL++ L++ K +G+ NF+P+
Sbjct: 412 SHYGFASGLNKDGIEAKLQELCLKNLNDLSS-LDLIKMDEGV-NFKPT 457
>TAIR|locus:2089144 [details] [associations]
symbol:RCK "ROCK-N-ROLLERS" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IMP] [GO:0051026 "chiasma assembly"
evidence=IMP] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007067
"mitosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0007131
GO:GO:0008026 GO:GO:0051026 KO:K15271 EMBL:AY822649 EMBL:AY960701
IPI:IPI00517826 RefSeq:NP_189410.2 UniGene:At.53523
ProteinModelPortal:Q5D892 SMR:Q5D892 STRING:Q5D892 PRIDE:Q5D892
EnsemblPlants:AT3G27730.1 GeneID:822395 KEGG:ath:AT3G27730
TAIR:At3g27730 HOGENOM:HOG000029933 InParanoid:Q5D892 OMA:IMTRRET
PhylomeDB:Q5D892 ProtClustDB:CLSN2699173 Genevestigator:Q5D892
Uniprot:Q5D892
Length = 1133
Score = 319 (117.4 bits), Expect = 4.2e-28, Sum P(2) = 4.2e-28
Identities = 77/204 (37%), Positives = 114/204 (55%)
Query: 746 KVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGD-VTPDIQAISSASVIVTTPEKWD 804
K VYI+P KALV+E++ DW KF + +ELTGD T + I A +I+TTPEK+D
Sbjct: 83 KTVYISPSKALVQEKLRDWNQKFNS-WGISCLELTGDNETYSTKNIQDADIILTTPEKFD 141
Query: 805 GVSR---SWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSY------TKRN 855
VSR + + +AL++IDE+HLL + RG LE IVSR+ +SS T +
Sbjct: 142 AVSRYRVTSGGLGFFSDIALVLIDEVHLLNDPRGAALEAIVSRLKILSSNHELRSSTLAS 201
Query: 856 VRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAK-MN 914
VRL+ +S + N +DLA WL + G+ F +RPV L + G+ + K +
Sbjct: 202 VRLLAVSATIPNIEDLAEWLKVPTAGIKRFGEEMRPVKLTTKVFGYAAAKNDFLFEKRLQ 261
Query: 915 KPIYTAIKQHSPEKPVMIFVSSRR 938
IY + Q+S K ++F S+R+
Sbjct: 262 NYIYDILMQYSKGKSALVFCSTRK 285
Score = 312 (114.9 bits), Expect = 8.1e-24, P = 8.1e-24
Identities = 71/176 (40%), Positives = 105/176 (59%)
Query: 690 YESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--PEA-- 745
+ S + F +FN +Q++ F +H+D N+++ APTGSGKT+ E+ R+F + E
Sbjct: 16 FRSAFSFRYFNSLQSECFPLCFHSDINMIISAPTGSGKTVLFELCILRLFSKSISKEGSF 75
Query: 746 -------KVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGD-VTPDIQAISSASVIV 797
K VYI+P KALV+E++ DW KF + +ELTGD T + I A +I+
Sbjct: 76 LHAKGALKTVYISPSKALVQEKLRDWNQKFNS-WGISCLELTGDNETYSTKNIQDADIIL 134
Query: 798 TTPEKWDGVSR---SWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISS 850
TTPEK+D VSR + + +AL++IDE+HLL + RG LE IVSR+ +SS
Sbjct: 135 TTPEKFDAVSRYRVTSGGLGFFSDIALVLIDEVHLLNDPRGAALEAIVSRLKILSS 190
Score = 144 (55.7 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
K T+ +N + G Y+ +LQ+ GRAGRP ++ +G I+T E ++ Y +LL
Sbjct: 384 KSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEV 443
Query: 215 IESNFVANLADNLNAEVALGTIGNIDEAVRWL---IIYINFVAN 255
+ES + L ++L AE+ TI +I A+ W+ +Y+ N
Sbjct: 444 VESQLLPCLIEHLTAEIVQLTISDITRAIEWMKCSYLYVRMKKN 487
Score = 138 (53.6 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 70/291 (24%), Positives = 121/291 (41%)
Query: 256 LADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTL 315
L ++L AE+ TI +I A+ W+ SYL+VRM+ NP Y I + D + +H L
Sbjct: 452 LIEHLTAEIVQLTISDITRAIEWMKCSYLYVRMKKNPENYAIKKG-IPKDR-VEKHLQEL 509
Query: 316 IENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKV-LDDVGIL 374
L + MI + L + GR + YY+K ++ T LD+ L
Sbjct: 510 CLQKINELSQYQMIWTDTDGFVLKPEEPGRLMTKYYLKFETMKYIINTPTSYSLDEA--L 567
Query: 375 SMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQT--------- 425
++ A E +++R E L+++ + E +R + GK +QT
Sbjct: 568 HIVCHAEEISWIQLRRNEKKTLNDVNADK-EGRLRFHINDNKGKRKKRIQTREEKLFVLA 626
Query: 426 ---LLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQ 482
L V+ S+ D + N RI R + E +++ N A K
Sbjct: 627 NDWLTGDPSVHDLSMTQDANSICSNGSRIARCMKEYFIYKKNYKGTLSSTLLAKSLYQKL 686
Query: 483 WPHETP--LRQ---IKLVTNRGYQSPILKP-DILNKIEQRGLTVEDLREMP 527
W ++P L+Q I +VT + S ++ + L + + R + + R+ P
Sbjct: 687 WD-DSPYLLKQLPGIGMVTAKALHSMGVRSFEALAEADPRRIEIVTGRKYP 736
Score = 87 (35.7 bits), Expect = 4.2e-28, Sum P(2) = 4.2e-28
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 50 NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAK 103
N +QS + +H++ N++I APTG+GKT + L I + IS+ +AK
Sbjct: 26 NSLQSECFPLCFHSDINMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLHAK 79
Score = 76 (31.8 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 8 VKLLIIDEVHLLHGDRGPVIEALVAR 33
+ L++IDEVHLL+ RG +EA+V+R
Sbjct: 159 IALVLIDEVHLLNDPRGAALEAIVSR 184
Score = 75 (31.5 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 25/100 (25%), Positives = 49/100 (49%)
Query: 84 TIAHQIK--QH--ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGRTASNY 139
T+AH I H + + T+ +N + G Y+ +LQ+ GRAGRP ++ D G
Sbjct: 369 TLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFD--DTGMVI--I 424
Query: 140 YIKHNDIELFTEHMTKGTEMYNAKH-GCYVHIGILDVLQI 178
+ + L+ E++ G E+ ++ C + +++Q+
Sbjct: 425 MTRRETVHLY-ENLLNGCEVVESQLLPCLIEHLTAEIVQL 463
>UNIPROTKB|B4E0P5 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001650
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0030529 GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC021188 UniGene:Hs.246112
HGNC:HGNC:30859 ChiTaRS:SNRNP200 EMBL:AK303465 IPI:IPI00927472
SMR:B4E0P5 STRING:B4E0P5 Ensembl:ENST00000429650
HOGENOM:HOG000031250 HOVERGEN:HBG078981 Uniprot:B4E0P5
Length = 595
Score = 335 (123.0 bits), Expect = 5.5e-27, P = 5.5e-27
Identities = 63/139 (45%), Positives = 96/139 (69%)
Query: 845 VNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGK 904
+ +ISS +R +R+V LS++L+NAKD+A WL + +NF P+VRPVPLE+HI GF
Sbjct: 1 MRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNIS 60
Query: 905 QYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILACETNPKMWVHTS 964
R+ M KP+Y AI +HSP+KPV++FV SR+QTRLTAID++T A + + ++H +
Sbjct: 61 HTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCT 120
Query: 965 DAEMDNIVDNIKDSNLKLT 983
+ ++ ++ + DS LK T
Sbjct: 121 EKDLIPYLEKLSDSTLKET 139
Score = 255 (94.8 bits), Expect = 6.3e-28, Sum P(2) = 6.3e-28
Identities = 85/312 (27%), Positives = 156/312 (50%)
Query: 258 DNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIE 317
D+ NAE+ TI N +AV +L++++L+ RM NP Y + + + L H + L+E
Sbjct: 261 DHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL---QGISHRHLSDHLSELVE 317
Query: 318 NAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMI 377
L+++ I D+A +LG A+ YYI + IELF+ + G++ +I
Sbjct: 318 QTLSDLEQSKCISIEDEM-DVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEII 376
Query: 378 SQAHEFEQLKVRDEELHELDNLTQECCE-IPIRGGS---ENVHGKVNILLQTLLSRGRVN 433
S A E+E + +R HE DNL ++ + +P + + + H K N+LLQ LSR +++
Sbjct: 377 SNAAEYENIPIRH---HE-DNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS 432
Query: 434 SFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAA-RFLKFALMFETKQWPHETPLRQI 492
+ L SD E + IR+I+A ++ L N + A ++ A M W ++ L+Q+
Sbjct: 433 A-ELQSDTEEILSKAIRLIQACVDV-LSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQL 490
Query: 493 KLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR--DPHVGDKVKQCAW 549
P + + + +G+ +V D+ EM +E + +L+ D + D + C
Sbjct: 491 ----------PHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCN- 539
Query: 550 EIPLLEIESKLL 561
P +E+ +++
Sbjct: 540 RYPNIELSYEVV 551
Score = 142 (55.0 bits), Expect = 6.3e-28, Sum P(2) = 6.3e-28
Identities = 34/102 (33%), Positives = 48/102 (47%)
Query: 157 TEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIE 216
T+ YN K YV I DVLQ+ G A RP + G I+ K + + L +P+E
Sbjct: 193 TQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVE 252
Query: 217 SNFVANLADNLNAEVALGTIGNIDEAV---RWLIIYINFVAN 255
S+ + D+ NAE+ TI N +AV W +Y N
Sbjct: 253 SHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQN 294
Score = 75 (31.5 bits), Expect = 6.3e-21, Sum P(2) = 6.3e-21
Identities = 34/124 (27%), Positives = 56/124 (45%)
Query: 16 VHLLHGDRGPVIEALVARTLRQIGQEVFKGV----KSLNRIQSLVYDTAYHTNE-NLLIC 70
+H D P +E L TL++ + GV + L+ ++ + + + + +++
Sbjct: 117 LHCTEKDLIPYLEKLSDSTLKET---LLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVA 173
Query: 71 APTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTS 130
+ + NVA AH + I T+ YN K YV I DVLQ+ G A RP +
Sbjct: 174 SRSLCWGMNVA----AHLV---IIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD-- 224
Query: 131 DLGR 134
D GR
Sbjct: 225 DEGR 228
>UNIPROTKB|D4A4G4 [details] [associations]
symbol:Hfm1 "Protein Hfm1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 IPI:IPI00388911 Ensembl:ENSRNOT00000033855
Uniprot:D4A4G4
Length = 410
Score = 298 (110.0 bits), Expect = 2.1e-24, P = 2.1e-24
Identities = 62/143 (43%), Positives = 92/143 (64%)
Query: 689 QYESLYK-FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCP---- 743
++ S++K F +FN IQ++ F L +TD N ++ APTGSGKT+ E+ R+ + P
Sbjct: 269 KFRSVFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEAPLPWL 328
Query: 744 EAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGD-VTPDIQAISSASVIVTTPEK 802
KVVY+AP+KAL +R DWK KF + ELTGD V D+ I A++I+TTPEK
Sbjct: 329 NMKVVYMAPIKALCSQRFDDWKEKF-GPIGLTCKELTGDTVMDDLFEIQHANIIMTTPEK 387
Query: 803 WDGVSRSWQNRNYVQSVALIIID 825
WD ++R W++ +++Q V L +ID
Sbjct: 388 WDSMTRKWRDNSFIQLVRLFLID 410
>UNIPROTKB|H9L353 [details] [associations]
symbol:H9L353 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:AADN02064072
Ensembl:ENSGALT00000036127 OMA:CTERLTE Uniprot:H9L353
Length = 98
Score = 248 (92.4 bits), Expect = 7.9e-20, P = 7.9e-20
Identities = 44/95 (46%), Positives = 66/95 (69%)
Query: 741 QCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTP 800
Q E + VYI P++AL ++ DW KF+ RL KKVV LTG+ + D++ + ++I++TP
Sbjct: 4 QNSEGRCVYITPMEALAEQVFMDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIISTP 63
Query: 801 EKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRG 835
EKWD +SR W+ R VQ+V L I+DE+HL+G + G
Sbjct: 64 EKWDILSRRWKQRKNVQNVNLFIVDEVHLIGGENG 98
>UNIPROTKB|I3L8F4 [details] [associations]
symbol:I3L8F4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026 EMBL:CU468078
Ensembl:ENSSSCT00000025178 OMA:CCILEIY Uniprot:I3L8F4
Length = 115
Score = 211 (79.3 bits), Expect = 7.0e-16, P = 7.0e-16
Identities = 39/63 (61%), Positives = 50/63 (79%)
Query: 46 VKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHG 105
++ LNRIQS+V++TAY+TNEN+LICAPTGAGKTN+AMLT+ H+I+QH QG N
Sbjct: 1 MRRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKI 60
Query: 106 CYV 108
YV
Sbjct: 61 VYV 63
Score = 133 (51.9 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 36/92 (39%), Positives = 51/92 (55%)
Query: 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC--------PEAKVVYIA 751
N IQ+ +F Y+T+ N+L+ APTG+GKT A +T +Q E K+VY+A
Sbjct: 5 NRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVA 64
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGDV 783
P+KAL E + + E L V ELTGD+
Sbjct: 65 PMKALAAEMTNYFSKRLEP-LGIVVKELTGDM 95
>UNIPROTKB|I3LVA7 [details] [associations]
symbol:I3LVA7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026 EMBL:CU468078
Ensembl:ENSSSCT00000024341 Uniprot:I3LVA7
Length = 119
Score = 209 (78.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 49/102 (48%), Positives = 67/102 (65%)
Query: 795 VIVTTPEKWDGVSR-SWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTK 853
++VTTPEKWD V+R S + Q V L+I+DE+HLL EDRGPVLE IV+R T+
Sbjct: 1 MLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQ 60
Query: 854 RNVRLVGLSTALANAKDLATWLNITKQ-GMYNFRPSVRPVPL 894
+R++GLS L N D+AT+L++ G++ F RPVPL
Sbjct: 61 SMIRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPL 102
Score = 156 (60.0 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 29/38 (76%), Positives = 37/38 (97%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIEALVARTLRQI 38
DVAL+++VKLLI+DEVHLLH DRGPV+E++VARTLRQ+
Sbjct: 19 DVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQV 56
Score = 38 (18.4 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 620 KSEESLIMTIPLSDPLPNQYL 640
+S +S+I + LS LPN YL
Sbjct: 57 ESTQSMIRILGLSATLPN-YL 76
Score = 37 (18.1 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 38 IGQEVFKGVKSLNRI 52
+GQ F GVKS N++
Sbjct: 102 LGQ-TFLGVKSANKV 115
>UNIPROTKB|E1C287 [details] [associations]
symbol:E1C287 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00550000074822 EMBL:AADN02012856
IPI:IPI00587427 Ensembl:ENSGALT00000009827 OMA:HAVKDES
Uniprot:E1C287
Length = 177
Score = 206 (77.6 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 53/158 (33%), Positives = 84/158 (53%)
Query: 801 EKWDGVSRSWQNRNYVQSVALIIIDEIHLL-GEDRGPVLEVIVSRVNFISSYTKR---N- 855
EKWD ++R W++ + VQ V L +IDE+H++ E RG LEV+VSR+ + S R N
Sbjct: 2 EKWDSMTRRWKDNSIVQLVRLFLIDEVHVIKDESRGATLEVVVSRMKTVQSSLWRLSENH 61
Query: 856 ----VRLVGLSTALANAKDLATWLNITKQGMYNFR--PSVRPVPLEVHISGFPGKQYCPR 909
+R V +S + NA+D+A WL+ K + RPV L + GFP
Sbjct: 62 DVPPLRFVAVSATIPNAEDIAEWLSDGKMPAVCLKVDEDQRPVKLRKIVLGFPCSDSQTE 121
Query: 910 MA---KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTA 944
+N I + I+ +S +KPV++F ++R+ + A
Sbjct: 122 FKFDLTLNYKIASVIQAYSDQKPVLVFCATRKGVQQAA 159
>UNIPROTKB|F1NYH9 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:AADN02009041 IPI:IPI00596471
Ensembl:ENSGALT00000018274 Uniprot:F1NYH9
Length = 995
Score = 199 (75.1 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 74/282 (26%), Positives = 127/282 (45%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVK-FEARLKK 774
N++ PT GKT+ AEI + C + V+ I P A+V+E+V W + F L
Sbjct: 261 NLIYSLPTSGGKTLVAEILILQELL-CRQKDVLMILPYVAIVQEKV--WGLSSFGIELGF 317
Query: 775 KVVELTGDVT--PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832
V E G P I+ S+ + T EK + S + + + L+++DE+H++GE
Sbjct: 318 LVEEYAGSKGRFPPIKRRIKKSLYIATIEKGHALVNSLIETDRIDDLGLVVVDELHMIGE 377
Query: 833 -DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRP---- 887
RG VLE+ ++++ Y +N +VG+S L N DL +L + NFRP
Sbjct: 378 GSRGAVLEMTLAKI----LYASKNTHVVGMSATLNNVGDLQKFLQ-AEYYTKNFRPVELK 432
Query: 888 ---SVRPVPLEVHI---SGFPGKQ-----YCPRMAKMNKP-IYTAIKQHSPEKPVMIFVS 935
+R EV +GF + Y + K + I + + P+ +IF
Sbjct: 433 EYIKIRDTIYEVDSKAENGFTFSRLLNFKYSSSLEKADPDHIVALVTEVIPKYSCLIFCP 492
Query: 936 SRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKD 977
+++ A T++ N + H + E +++ N+KD
Sbjct: 493 TKKNCENVA----TMVCKYLNKEFRAHR-EKEKQDLIKNLKD 529
Score = 58 (25.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 22 DRGPV--IEALVARTLRQIGQEVFKGVKSLNRIQ-SLVYDTAYHTNENLLICAPTGAGKT 78
D GP + + V LRQ F+G+++L Q + + +NL+ PT GKT
Sbjct: 219 DIGPFYGLPSKVKHLLRQ-----FRGIETLYEWQHDCLTLKSLQQRKNLIYSLPTSGGKT 273
Query: 79 NVAMLTIAHQI 89
VA + I ++
Sbjct: 274 LVAEILILQEL 284
>UNIPROTKB|J9P160 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 CTD:113510 EMBL:AAEX03016730 RefSeq:XP_544959.2
Ensembl:ENSCAFT00000044378 GeneID:487837 KEGG:cfa:487837
Uniprot:J9P160
Length = 1072
Score = 202 (76.2 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 55/186 (29%), Positives = 94/186 (50%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
N++ PT GKT+ AEI + C V+ I P A+V+E+++ F L
Sbjct: 326 NLIYSLPTSGGKTLVAEILMLQELL-CRRRDVLMILPYVAIVQEKISGLS-SFGIELGFF 383
Query: 776 VVELTGDVT--PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832
V E G P I+ S+ + T EK + + S + S+ L+++DE+H++GE
Sbjct: 384 VEEYAGSKGKFPPIKRRGKKSLYIATIEKGNSLVNSLIETGRISSLGLVVVDELHMIGEG 443
Query: 833 DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPV 892
RG +LE+ +++V YT + +++G+S L N +DL +L Q Y + RPV
Sbjct: 444 SRGAILEMTLAKV----LYTSKTTQIIGMSATLTNVEDLQKFL----QAEY-YTSQFRPV 494
Query: 893 PLEVHI 898
L+ ++
Sbjct: 495 ELKEYL 500
>UNIPROTKB|E2RST3 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 OMA:SRPLENC EMBL:AAEX03016730
Ensembl:ENSCAFT00000014486 Uniprot:E2RST3
Length = 1106
Score = 202 (76.2 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 55/186 (29%), Positives = 94/186 (50%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
N++ PT GKT+ AEI + C V+ I P A+V+E+++ F L
Sbjct: 360 NLIYSLPTSGGKTLVAEILMLQELL-CRRRDVLMILPYVAIVQEKISGLS-SFGIELGFF 417
Query: 776 VVELTGDVT--PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832
V E G P I+ S+ + T EK + + S + S+ L+++DE+H++GE
Sbjct: 418 VEEYAGSKGKFPPIKRRGKKSLYIATIEKGNSLVNSLIETGRISSLGLVVVDELHMIGEG 477
Query: 833 DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPV 892
RG +LE+ +++V YT + +++G+S L N +DL +L Q Y + RPV
Sbjct: 478 SRGAILEMTLAKV----LYTSKTTQIIGMSATLTNVEDLQKFL----QAEY-YTSQFRPV 528
Query: 893 PLEVHI 898
L+ ++
Sbjct: 529 ELKEYL 534
>ZFIN|ZDB-GENE-060503-421 [details] [associations]
symbol:helq "helicase, POLQ-like" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR010995 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060503-421 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
EMBL:BX649525 CTD:113510 IPI:IPI00799443 RefSeq:XP_691411.3
UniGene:Dr.86132 Ensembl:ENSDART00000109412 GeneID:562952
KEGG:dre:562952 NextBio:20884669 Uniprot:F1Q4P2
Length = 1010
Score = 210 (79.0 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 54/175 (30%), Positives = 93/175 (53%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
N++ PT GKT+ AEI F+ C + + I P +LV+E+V F L
Sbjct: 275 NLIYSLPTSGGKTLVAEILIFKELL-CRKKDALLILPYISLVQEKVRGLS-SFGIELDFL 332
Query: 776 VVELTGDVT--PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832
V E G P ++ + S+ +TT EK + S + + ++ L+++DE+H+LG+
Sbjct: 333 VEEYAGSKGKFPPVKRRNKNSLYITTIEKGHSLVNSLIENDRLDNIGLVVVDELHMLGDG 392
Query: 833 DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRP 887
RG +LE+ +S++ ++S T+ ++G+S L N KDL ++L + NFRP
Sbjct: 393 SRGAILEMTLSKILYMSKSTQ----VIGMSATLGNVKDLQSFLR-AENYTNNFRP 442
Score = 42 (19.8 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 196 ITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVAN 255
+TP +K + + S T E + ++A+N E+ ++ E ++ +F+A
Sbjct: 31 VTPAKKRSSFTST-TCLADKEQIYTQDMAENEGVELCCSDNEDLFEGYDSIVADSSFLAK 89
Query: 256 LAD 258
L D
Sbjct: 90 LED 92
>DICTYBASE|DDB_G0279107 [details] [associations]
symbol:DDB_G0279107 "Helicase POLQ-like"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0279107 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000027 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 SUPFAM:SSF47794 GO:GO:0008026 RefSeq:XP_641869.1
ProteinModelPortal:Q54X98 EnsemblProtists:DDB0205039 GeneID:8621875
KEGG:ddi:DDB_G0279107 InParanoid:Q54X98 OMA:LTNDERE
ProtClustDB:CLSZ2430718 Uniprot:Q54X98
Length = 1238
Score = 191 (72.3 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 74/288 (25%), Positives = 139/288 (48%)
Query: 709 CLYHTDNNVLLGA------PTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVA 762
CL +D+N+LLG PT GKT+ AEI FR K ++I P ++V E+
Sbjct: 461 CL--SDSNLLLGENLIYSLPTSGGKTLVAEIILFRNLL-IKNKKSLFIFPFVSIVCEKTE 517
Query: 763 DWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALI 822
+F + L+ V G I + +++ T EK + + + + +
Sbjct: 518 SMH-EFSSALQIPVEGYHG-CNGTIPVLPGKRLLICTIEKANIIVNQLIEDGRLLDIGCV 575
Query: 823 IIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQG 881
++DEIH++G+ +RG +LEV++S++ ++S K ++++G+S + N +L W + G
Sbjct: 576 VVDEIHMIGDGERGQLLEVLISKLLYMS---KGQIQIIGMSATIPNIDNLQKWF---RGG 629
Query: 882 MYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIY--TAIKQHS--------PEKPVM 931
+Y + + RPVPL +I G + + + K + A + H+ P+ V+
Sbjct: 630 VY--QGTFRPVPLTEYIK--IGDKLYDKENNLVKSLQGTEANENHTLQLCLEVVPKHSVL 685
Query: 932 IFVSSRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDSN 979
IF +S+ L + L LA ++ P+ + E + ++ I+ SN
Sbjct: 686 IFCASK----LLTVSLALQLA-KSFPQAILDNRRDEREILIQLIESSN 728
>UNIPROTKB|F1NMU1 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0006281 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 GO:GO:0003887 GO:GO:0043142 EMBL:AADN02037908
IPI:IPI00584654 Ensembl:ENSGALT00000024072 Uniprot:F1NMU1
Length = 904
Score = 189 (71.6 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 57/193 (29%), Positives = 101/193 (52%)
Query: 716 NVLLGAPTGSGKTIAAEITCF-RVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
N++ APT +GKT+ AE+ RV + K ++I P ++ KE+ + F+ +
Sbjct: 75 NLVYSAPTSAGKTLVAELLILKRVLET--RKKALFILPFVSVAKEKKCYLQALFQ-EVDM 131
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED- 833
+V G ++P S V V T EK +G+ N + S+ ++++DE+H+LG+
Sbjct: 132 RVGGYMGSISP-AGRFSLLDVAVCTIEKANGLINRLIEENQMDSLGVVVVDELHMLGDSH 190
Query: 834 RGPVLEVIVSRVNFISSYT-KRN----------VRLVGLSTALANAKDLATWLNITKQGM 882
RG +LE+++++V +I+ KR +++VG+S L N LA+WL+ +
Sbjct: 191 RGYLLELLLTKVRYITEKAAKRKTKMKSPGFGGIQVVGMSATLPNLGLLASWLDAE---L 247
Query: 883 YNFRPSVRPVPLE 895
Y RPVPL+
Sbjct: 248 YC--TDFRPVPLK 258
>MGI|MGI:2176740 [details] [associations]
symbol:Helq "helicase, POLQ-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017116 "single-stranded
DNA-dependent ATP-dependent DNA helicase activity" evidence=ISO]
[GO:0017117 "single-stranded DNA-dependent ATP-dependent DNA
helicase complex" evidence=ISO] InterPro:IPR001650
InterPro:IPR010995 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2176740 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
SUPFAM:SSF47794 GO:GO:0017116 CTD:113510 OMA:SRPLENC
OrthoDB:EOG4THVSJ EMBL:BC082601 EMBL:BC109169 EMBL:BC109170
EMBL:AK052427 EMBL:AF436846 IPI:IPI00226287 IPI:IPI00886160
IPI:IPI00890018 RefSeq:NP_001074576.1 UniGene:Mm.21469
ProteinModelPortal:Q2VPA6 SMR:Q2VPA6 STRING:Q2VPA6
PhosphoSite:Q2VPA6 PRIDE:Q2VPA6 Ensembl:ENSMUST00000044684
GeneID:191578 KEGG:mmu:191578 UCSC:uc008yhz.1 UCSC:uc012dzs.1
HOGENOM:HOG000110747 InParanoid:Q2VPA6 NextBio:371088 Bgee:Q2VPA6
Genevestigator:Q2VPA6 GO:GO:0017117 Uniprot:Q2VPA6
Length = 1069
Score = 189 (71.6 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 50/175 (28%), Positives = 89/175 (50%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
N++ PT GKT+ AEI + C + V+ I P A+V+E+++ F L
Sbjct: 313 NLIYSLPTSGGKTLVAEILMLQELL-CRQKDVLMILPYVAIVQEKISSLS-SFGIELGFF 370
Query: 776 VVELTGDVT--PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832
V E G P I+ S+ + T EK + + + + ++ L+++DE+H++GE
Sbjct: 371 VEEYAGSKGRFPPIKRREKKSLYIATIEKAHSLVNALIETSRLSTLGLVVVDELHMIGEG 430
Query: 833 DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRP 887
RG +LE+ +++V YT + +++G+S L N +DL +L + FRP
Sbjct: 431 SRGAILEMTLAKV----LYTSKTTQIIGMSATLNNVEDLQAFLK-AEYYTSQFRP 480
>CGD|CAL0002171 [details] [associations]
symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
KEGG:cal:CaO19.6425 Uniprot:Q5A337
Length = 1245
Score = 188 (71.2 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 58/198 (29%), Positives = 100/198 (50%)
Query: 706 IFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWK 765
+FH L D+ V + A T +GKT+ AE + K +Y +P+KAL ++ D+K
Sbjct: 298 VFH-LEQGDS-VFVAAHTSAGKTVVAEYAIAMAHRNM--TKCIYTSPIKALSNQKFRDFK 353
Query: 766 VKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQNRNYVQSVALII 823
F K +++ G +T D+Q A+ ++ T E + RS ++ + ++ V +I
Sbjct: 354 ETF------KDIDV-GLITGDVQINPEANCLIMTTE----ILRSMLYRGADLIRDVEFVI 402
Query: 824 IDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ-G 881
DE+H + + DRG V E ++ + +V+ + LS + N + A W+ TKQ
Sbjct: 403 FDEVHYVNDIDRGVVWEEVIIML-------PDHVKYILLSATVPNTFEFANWVGRTKQKD 455
Query: 882 MYNFRPSVRPVPLEVHIS 899
+Y RPVPLE+ +S
Sbjct: 456 IYVISTPKRPVPLEIFVS 473
>FB|FBgn0002899 [details] [associations]
symbol:mus301 "mutagen-sensitive 301" species:7227
"Drosophila melanogaster" [GO:0007294 "germarium-derived oocyte
fate determination" evidence=IGI;IMP] [GO:0008298 "intracellular
mRNA localization" evidence=IMP;TAS] [GO:0048477 "oogenesis"
evidence=IGI;TAS] [GO:0009949 "polarity specification of
anterior/posterior axis" evidence=IMP] [GO:0030717 "karyosome
formation" evidence=IMP] [GO:0009951 "polarity specification of
dorsal/ventral axis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0009994 "oocyte differentiation" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016321 "female meiosis chromosome segregation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009949 GO:GO:0007294 EMBL:AE014296 GO:GO:0006417
GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 GO:GO:0008298
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0030717 GO:GO:0016321
GO:GO:0008026 OMA:SRPLENC GO:GO:0009951 EMBL:BT011090
RefSeq:NP_648178.1 UniGene:Dm.15493 SMR:Q9VSE2 IntAct:Q9VSE2
STRING:Q9VSE2 EnsemblMetazoa:FBtr0076689 GeneID:38905
KEGG:dme:Dmel_CG7972 UCSC:CG7972-RA CTD:38905 FlyBase:FBgn0002899
InParanoid:Q9VSE2 OrthoDB:EOG4MKKXB GenomeRNAi:38905 NextBio:810944
Uniprot:Q9VSE2
Length = 1051
Score = 186 (70.5 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 56/191 (29%), Positives = 97/191 (50%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
N++ PT GKT+ AEI R C E V++I P ++V+E+V+ F L
Sbjct: 282 NLIYALPTSGGKTLVAEILMLRELL-CRERNVLFILPYVSIVQEKVSAMS-PFAIDLDFI 339
Query: 776 VVELT---GDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832
V E T G P + S+ + + EK + S + + L+++DE+HL+GE
Sbjct: 340 VEEYTAGKGKCPPQPRR-KRRSLFIASIEKGAVLMDSLIDVQRPHEIGLVVVDELHLIGE 398
Query: 833 D-RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRP 891
RG LE +++V F+++ N+++VG+S + N +++++LN +Y RP
Sbjct: 399 KGRGATLEAFLTKVMFLNA----NIQIVGMSATIGNLSEISSFLNAD---VYT--RGFRP 449
Query: 892 VPLEVHISGFP 902
V L+ +I P
Sbjct: 450 VELKEYIKCGP 460
>UNIPROTKB|E9PSY5 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1560216 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI01007603 Ensembl:ENSRNOT00000031633 ArrayExpress:E9PSY5
Uniprot:E9PSY5
Length = 805
Score = 184 (69.8 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 50/175 (28%), Positives = 87/175 (49%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
N++ PT GKT+ AEI + C + V+ I P A+V+E+++ F L
Sbjct: 309 NLIYSLPTSGGKTLVAEILMLQELL-CRQKDVLLILPYVAIVQEKISSLS-SFGIELGFF 366
Query: 776 VVELTGDVT--PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832
V E G P I+ S+ + T EK + + + ++ L+++DE+H++GE
Sbjct: 367 VEEYAGSKGRFPPIKRREKKSLYIATIEKGHSLVNALIETGRMGTLGLVVVDELHMIGEG 426
Query: 833 DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRP 887
RG LE+ +++V YT + +++G+S L N +DL +L + FRP
Sbjct: 427 SRGATLEMTLAKV----LYTSKTTQIIGMSATLNNVEDLQAFLK-AEYYTSQFRP 476
>UNIPROTKB|E9PT19 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1560216
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 IPI:IPI00958253 Ensembl:ENSRNOT00000002974
ArrayExpress:E9PT19 Uniprot:E9PT19
Length = 879
Score = 184 (69.8 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 50/175 (28%), Positives = 87/175 (49%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
N++ PT GKT+ AEI + C + V+ I P A+V+E+++ F L
Sbjct: 309 NLIYSLPTSGGKTLVAEILMLQELL-CRQKDVLLILPYVAIVQEKISSLS-SFGIELGFF 366
Query: 776 VVELTGDVT--PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832
V E G P I+ S+ + T EK + + + ++ L+++DE+H++GE
Sbjct: 367 VEEYAGSKGRFPPIKRREKKSLYIATIEKGHSLVNALIETGRMGTLGLVVVDELHMIGEG 426
Query: 833 DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRP 887
RG LE+ +++V YT + +++G+S L N +DL +L + FRP
Sbjct: 427 SRGATLEMTLAKV----LYTSKTTQIIGMSATLNNVEDLQAFLK-AEYYTSQFRP 476
>UNIPROTKB|O75417 [details] [associations]
symbol:POLQ "DNA polymerase theta" species:9606 "Homo
sapiens" [GO:0006260 "DNA replication" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271
Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194
SMART:SM00482 SMART:SM00490 GO:GO:0005524 GO:GO:0005654
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098
EMBL:AC069239 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 GO:GO:0008026 GO:GO:0003887 GO:GO:0043142
EMBL:AF052573 EMBL:AY338826 EMBL:AC079841 EMBL:AF043628
IPI:IPI00794779 IPI:IPI01012356 RefSeq:NP_955452.3
UniGene:Hs.241517 ProteinModelPortal:O75417 STRING:O75417
PhosphoSite:O75417 PaxDb:O75417 PRIDE:O75417 DNASU:10721
Ensembl:ENST00000264233 GeneID:10721 KEGG:hsa:10721 UCSC:uc003eed.3
UCSC:uc003eee.4 CTD:10721 GeneCards:GC03M121150 H-InvDB:HIX0030706
HGNC:HGNC:9186 HPA:HPA048931 MIM:604419 neXtProt:NX_O75417
PharmGKB:PA33506 HOGENOM:HOG000146444 HOVERGEN:HBG005525 KO:K02349
OrthoDB:EOG42RD6C ChEMBL:CHEMBL6025 GenomeRNAi:10721 NextBio:40701
ArrayExpress:O75417 Bgee:O75417 CleanEx:HS_POLH CleanEx:HS_POLQ
Genevestigator:O75417 GermOnline:ENSG00000051341 Uniprot:O75417
Length = 2590
Score = 186 (70.5 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 55/192 (28%), Positives = 101/192 (52%)
Query: 716 NVLLGAPTGSGKTIAAEITCF-RVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
N++ APT +GKT+ AE+ RV + K ++I P ++ KE+ + F+ +
Sbjct: 110 NLVYSAPTSAGKTLVAELLILKRVLEM--RKKALFILPFVSVAKEKKYYLQSLFQ-EVGI 166
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED- 833
KV G +P + SS + V T E+ +G+ N + + ++++DE+H+LG+
Sbjct: 167 KVDGYMGSTSPS-RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSH 225
Query: 834 RGPVLEVIVSRVNFIS-----------SYTKRNVRLVGLSTALANAKDLATWLNITKQGM 882
RG +LE++++++ +I+ S V++VG+S L N + +A+WLN +
Sbjct: 226 RGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAE---L 282
Query: 883 YNFRPSVRPVPL 894
Y+ RPVPL
Sbjct: 283 YH--TDFRPVPL 292
>UNIPROTKB|F1PXD9 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AAEX03017021 Ensembl:ENSCAFT00000018256
OMA:NECHITF Uniprot:F1PXD9
Length = 1835
Score = 179 (68.1 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 54/192 (28%), Positives = 100/192 (52%)
Query: 716 NVLLGAPTGSGKTIAAEITCF-RVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
N++ APT +GKT+ AE+ RV + K ++I P ++ KE+ + F+ +
Sbjct: 19 NLVYSAPTSAGKTLVAELLMLKRVLEM--RKKALFILPFVSVAKEKKYYLQSLFQ-EIGI 75
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED- 833
V G +P SS + V T E+ +G+ N + + ++++DE+H+LG+
Sbjct: 76 NVDGYMGSTSPTGH-FSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSH 134
Query: 834 RGPVLEVIVSRVNFIS-----------SYTKRNVRLVGLSTALANAKDLATWLNITKQGM 882
RG +LE++++++ +I+ S V++VG+S L N + +A+WLN +
Sbjct: 135 RGYLLELLLTKICYITHKSASCQADLASPLSNAVQIVGMSATLPNLEIVASWLNAE---L 191
Query: 883 YNFRPSVRPVPL 894
Y+ + RPVPL
Sbjct: 192 YH--TNFRPVPL 201
>UNIPROTKB|C9JAQ9 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR004179 Pfam:PF02889
HOGENOM:HOG000157749 GO:GO:0008026 EMBL:AC021188 HGNC:HGNC:30859
ChiTaRS:SNRNP200 IPI:IPI01018841 ProteinModelPortal:C9JAQ9
SMR:C9JAQ9 STRING:C9JAQ9 Ensembl:ENST00000349783
ArrayExpress:C9JAQ9 Bgee:C9JAQ9 Uniprot:C9JAQ9
Length = 625
Score = 173 (66.0 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 28 EALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAH 87
+ L L + Q F+G K+LNRIQS +Y A T+ENLL+CAPTGAGKTNVA++ +
Sbjct: 460 QLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLR 519
Query: 88 QIKQHISQ-GT 97
+I +HI+ GT
Sbjct: 520 EIGKHINMDGT 530
Score = 137 (53.3 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 41/125 (32%), Positives = 63/125 (50%)
Query: 650 GSVVQHSMSFKHLIVPELHP-PHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFH 708
GS + ++ + VP L P P + E Q LPV L + F N IQ++++
Sbjct: 433 GSFRRQRKGYEEVHVPALKPKPFGS--EEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYR 490
Query: 709 CLYHTDNNVLLGAPTGSGKTIAAEITCFR-VFKQC--------PEAKVVYIAPLKALVKE 759
TD N+LL APTG+GKT A + R + K + K++YIAP+++LV+E
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 760 RVADW 764
V +
Sbjct: 551 MVGSF 555
>RGD|1309795 [details] [associations]
symbol:Polq "polymerase (DNA directed), theta" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003887 OMA:CFSDESI IPI:IPI00362354
Ensembl:ENSRNOT00000034841 UCSC:RGD:1309795 Uniprot:D4ABI8
Length = 2540
Score = 179 (68.1 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 57/192 (29%), Positives = 100/192 (52%)
Query: 716 NVLLGAPTGSGKTIAAEITCF-RVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
N++ APT +GKT+ AE+ RV + K ++I P ++ KE+ + F+ +
Sbjct: 111 NLVYSAPTSAGKTLVAELLILKRVLET--RKKALFILPFVSVAKEKKYYLQSLFQ-EVGI 167
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED- 833
KV G +P + SS V V T E+ +G+ N + + +++DE+H+LG+
Sbjct: 168 KVDGYMGSTSPTGR-FSSLDVAVCTIERANGLINRLIEENKMDLLGTVVVDELHMLGDSH 226
Query: 834 RGPVLEVIVSRVNFIS-----------SYTKRNVRLVGLSTALANAKDLATWLNITKQGM 882
RG +LE+++++V F++ S V++VG+S L N + +A+WLN +
Sbjct: 227 RGYLLELLLTKVCFVTRKSASCQADSASALACAVQIVGMSATLPNLQLVASWLNAE---L 283
Query: 883 YNFRPSVRPVPL 894
Y+ RPVPL
Sbjct: 284 YH--TDFRPVPL 293
>UNIPROTKB|D4A628 [details] [associations]
symbol:Polq "Polymerase (DNA directed), theta (Predicted),
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
GO:GO:0003887 GO:GO:0043142 CTD:10721 KO:K02349 OrthoDB:EOG42RD6C
EMBL:CH473967 IPI:IPI00949142 RefSeq:NP_001099348.1
UniGene:Rn.131176 Ensembl:ENSRNOT00000063995 GeneID:288079
KEGG:rno:288079 NextBio:627549 Uniprot:D4A628
Length = 2547
Score = 179 (68.1 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 57/192 (29%), Positives = 100/192 (52%)
Query: 716 NVLLGAPTGSGKTIAAEITCF-RVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
N++ APT +GKT+ AE+ RV + K ++I P ++ KE+ + F+ +
Sbjct: 111 NLVYSAPTSAGKTLVAELLILKRVLET--RKKALFILPFVSVAKEKKYYLQSLFQ-EVGI 167
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED- 833
KV G +P + SS V V T E+ +G+ N + + +++DE+H+LG+
Sbjct: 168 KVDGYMGSTSPTGR-FSSLDVAVCTIERANGLINRLIEENKMDLLGTVVVDELHMLGDSH 226
Query: 834 RGPVLEVIVSRVNFIS-----------SYTKRNVRLVGLSTALANAKDLATWLNITKQGM 882
RG +LE+++++V F++ S V++VG+S L N + +A+WLN +
Sbjct: 227 RGYLLELLLTKVCFVTRKSASCQADSASALACAVQIVGMSATLPNLQLVASWLNAE---L 283
Query: 883 YNFRPSVRPVPL 894
Y+ RPVPL
Sbjct: 284 YH--TDFRPVPL 293
>FB|FBgn0002905 [details] [associations]
symbol:mus308 "mutagen-sensitive 308" species:7227
"Drosophila melanogaster" [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS;NAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR003583 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00278 SMART:SM00482 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006200 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
GO:GO:0006303 GO:GO:0006289 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:L76559 EMBL:BT044169 PIR:T13858 RefSeq:NP_524333.1
UniGene:Dm.23677 HSSP:P00582 SMR:O18475 STRING:O18475
EnsemblMetazoa:FBtr0082662 GeneID:41571 KEGG:dme:Dmel_CG6019
UCSC:CG6019-RA CTD:41571 FlyBase:FBgn0002905 InParanoid:O18475
OrthoDB:EOG4FJ6QM GenomeRNAi:41571 NextBio:824448 Uniprot:O18475
Length = 2059
Score = 178 (67.7 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 64/282 (22%), Positives = 134/282 (47%)
Query: 611 LLSKKQVITKSE---ESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPEL 667
+L V+ K E E +T LS PNQ + S R ++ +M + + +L
Sbjct: 151 ILHSHSVLAKQEFYQEISQVTQNLSSMSPNQLRVSPNSSR-----IREAMPERPAMPLDL 205
Query: 668 HPPHTNLLELQPLPVSALQQPQYESLYKFSHFN-PIQTQIFHCLYHTDNNVLLGAPTGSG 726
+ + + LP+S Q +Y+ F+ ++ L N++ APT +G
Sbjct: 206 NTLRS--ISAWNLPMSI--QAEYKKKGVVDMFDWQVECLSKPRLLFEHCNLVYSAPTSAG 261
Query: 727 KTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPD 786
KT+ +EI + + + KV+ I P ++V+E++ + +V G TP
Sbjct: 262 KTLVSEILMLKTVLERGK-KVLLILPFISVVREKMF-YMQDLLTPAGYRVEGFYGGYTPP 319
Query: 787 IQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED-RGPVLEVIVSRV 845
S V + T EK + + + ++++ ++++DE+HL+ + RG +LE++++++
Sbjct: 320 -GGFESLHVAICTIEKANSIVNKLMEQGKLETIGMVVVDEVHLISDKGRGYILELLLAKI 378
Query: 846 NFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRP 887
++S ++++ +S L N + L +WL+ + + N+RP
Sbjct: 379 LYMSRRNGLQIQVITMSATLENVQLLQSWLD-AELYITNYRP 419
>SGD|S000004390 [details] [associations]
symbol:SKI2 "Ski complex component and putative RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA;IPI] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 SGD:S000004390 GO:GO:0005524
GO:GO:0006417 GO:GO:0003677 EMBL:BK006945 GO:GO:0051607
GO:GO:0003723 EMBL:U19729 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z18944 EMBL:L13469 GO:GO:0008026 GO:GO:0003724
GO:GO:0070478 GO:GO:0070481 eggNOG:COG4581 KO:K05544
RefSeq:NP_013505.4 GeneID:851117 KEGG:sce:YLR401C
InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087 HOGENOM:HOG000163048
KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R PIR:S55954
RefSeq:NP_013502.3 PDB:4A4K PDB:4A4Z PDBsum:4A4K PDBsum:4A4Z
ProteinModelPortal:P35207 SMR:P35207 DIP:DIP-5887N IntAct:P35207
MINT:MINT-662639 STRING:P35207 PaxDb:P35207 PeptideAtlas:P35207
EnsemblFungi:YLR398C GeneID:851114 KEGG:sce:YLR398C CYGD:YLR398c
GeneTree:ENSGT00690000102154 NextBio:967830 Genevestigator:P35207
GermOnline:YLR398C Uniprot:P35207
Length = 1287
Score = 198 (74.8 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 61/232 (26%), Positives = 115/232 (49%)
Query: 701 PIQTQIFH--CLYHTD--NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756
P + F +YH + ++V + A T +GKT+ AE + K +Y +P+KAL
Sbjct: 327 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM--TKTIYTSPIKAL 384
Query: 757 VKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQNRN 814
++ D+K F+ V + G +T D+Q A+ ++ T E + RS ++ +
Sbjct: 385 SNQKFRDFKETFDD------VNI-GLITGDVQINPDANCLIMTTE----ILRSMLYRGAD 433
Query: 815 YVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLAT 873
++ V +I DE+H + + DRG V E ++ + ++V+ + LS + N + A
Sbjct: 434 LIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML-------PQHVKFILLSATVPNTYEFAN 486
Query: 874 WLNITKQ-GMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQH 924
W+ TKQ +Y RPVPLE++I + K+ P + + ++ + ++H
Sbjct: 487 WIGRTKQKNIYVISTPKRPVPLEINI--WAKKELIPVINQNSEFLEANFRKH 536
Score = 39 (18.8 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 929 PVMIFVSSRRQTRLTAIDLITILACETNPKMWVH 962
P+++FV S+++ A L I C K +H
Sbjct: 628 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIH 661
Score = 38 (18.4 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 352 IKHN-DIELFTEHMTKV 367
I +N D+ELF + +TK+
Sbjct: 20 ITNNADVELFEDRITKL 36
Score = 37 (18.1 bits), Expect = 6.6e-09, Sum P(3) = 6.6e-09
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 141 IKHN-DIELFTEHMTK 155
I +N D+ELF + +TK
Sbjct: 20 ITNNADVELFEDRITK 35
>WB|WBGene00021905 [details] [associations]
symbol:helq-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IGI] [GO:0051117 "ATPase
binding" evidence=IPI] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0000712 GO:GO:0017116
OMA:SRPLENC EMBL:FO080183 RefSeq:NP_001022911.1
ProteinModelPortal:H2KY86 SMR:H2KY86 EnsemblMetazoa:Y55B1AL.3a
GeneID:175210 KEGG:cel:CELE_Y55B1AL.3 CTD:175210
WormBase:Y55B1AL.3a Uniprot:H2KY86
Length = 923
Score = 173 (66.0 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 62/227 (27%), Positives = 103/227 (45%)
Query: 665 PELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDN-NVLLGAPT 723
PE P L + LP ++ Y + K F Q + D N +L PT
Sbjct: 136 PEKRPETLTLDPSKCLPERDMEM--YRKIKKLDKFYDWQQECLSDKRLLDGENCILSLPT 193
Query: 724 GSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDV 783
G+GKT+ AE+ R + + + P A+V+E+++ FE + E +
Sbjct: 194 GAGKTLIAEVLMLRE-AIVRKRNAILVLPYVAIVQEKISAL-APFEDAFGINIEEYASNK 251
Query: 784 T--PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED-RGPVLEV 840
P I+ SV V T EK + + S + + V ++++DE+H++G+ RG +LE
Sbjct: 252 GRFPPIKRRKRVSVYVATIEKANMLINSLITQGQLDRVGMVVVDELHMIGDGGRGAILEQ 311
Query: 841 IVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRP 887
++++ F+ Y K ++VG+S L N DL L NFRP
Sbjct: 312 LLAK--FL--Y-KGTGQIVGMSATLPNIDDLKFALRAFVYST-NFRP 352
>UNIPROTKB|H9L1I6 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AADN02044729 EMBL:AADN02044730
Ensembl:ENSGALT00000035544 Uniprot:H9L1I6
Length = 571
Score = 170 (64.9 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 37/72 (51%), Positives = 51/72 (70%)
Query: 28 EALVA-RTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIA 86
E LV+ L + Q F+G K+LNRIQS +Y A ++ENLL+CAPTGAGKTNVA++ +
Sbjct: 459 EQLVSVEKLPKYAQAGFEGFKTLNRIQSKLYRAALESDENLLLCAPTGAGKTNVALMCML 518
Query: 87 HQIKQHISQ-GT 97
+I +HI+ GT
Sbjct: 519 REIGKHINMDGT 530
Score = 127 (49.8 bits), Expect = 0.00026, P = 0.00026
Identities = 41/128 (32%), Positives = 65/128 (50%)
Query: 650 GSVVQHSMSFKHLIVPELHP-P---HTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQ 705
GS + ++ + VP L P P L+ ++ LP A Q +E F N IQ++
Sbjct: 433 GSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYA--QAGFEG---FKTLNRIQSK 487
Query: 706 IFHCLYHTDNNVLLGAPTGSGKTIAAEITCFR-VFKQC--------PEAKVVYIAPLKAL 756
++ +D N+LL APTG+GKT A + R + K E K++YIAP+++L
Sbjct: 488 LYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDEFKIIYIAPMRSL 547
Query: 757 VKERVADW 764
V+E V +
Sbjct: 548 VQEMVGSF 555
>UNIPROTKB|H9KZ72 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AADN02044729 EMBL:AADN02044730
Ensembl:ENSGALT00000005505 Uniprot:H9KZ72
Length = 613
Score = 170 (64.9 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 37/72 (51%), Positives = 51/72 (70%)
Query: 28 EALVA-RTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIA 86
E LV+ L + Q F+G K+LNRIQS +Y A ++ENLL+CAPTGAGKTNVA++ +
Sbjct: 459 EQLVSVEKLPKYAQAGFEGFKTLNRIQSKLYRAALESDENLLLCAPTGAGKTNVALMCML 518
Query: 87 HQIKQHISQ-GT 97
+I +HI+ GT
Sbjct: 519 REIGKHINMDGT 530
>UNIPROTKB|Q8TDG4 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AF436845 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GO:GO:0008026 EMBL:AK128665
EMBL:AC096768 EMBL:BC015428 EMBL:BC095473 EMBL:AL512702
IPI:IPI00152527 IPI:IPI00647582 IPI:IPI00807650 IPI:IPI00889496
RefSeq:NP_598375.2 UniGene:Hs.480101 ProteinModelPortal:Q8TDG4
SMR:Q8TDG4 IntAct:Q8TDG4 STRING:Q8TDG4 PhosphoSite:Q8TDG4
DMDM:296434521 PaxDb:Q8TDG4 PRIDE:Q8TDG4 DNASU:113510
Ensembl:ENST00000295488 GeneID:113510 KEGG:hsa:113510
UCSC:uc003hom.3 UCSC:uc003hoo.1 UCSC:uc003hop.1 CTD:113510
GeneCards:GC04M084328 HGNC:HGNC:18536 HPA:HPA036853 MIM:606769
neXtProt:NX_Q8TDG4 PharmGKB:PA164720529 InParanoid:Q8TDG4
OMA:SRPLENC OrthoDB:EOG4THVSJ PhylomeDB:Q8TDG4 GenomeRNAi:113510
NextBio:78853 ArrayExpress:Q8TDG4 Bgee:Q8TDG4 Genevestigator:Q8TDG4
Uniprot:Q8TDG4
Length = 1101
Score = 188 (71.2 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 53/186 (28%), Positives = 92/186 (49%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
N++ PT GKT+ AEI + C + V+ I P A+V+E+++ F L
Sbjct: 354 NLIYSLPTSGGKTLVAEILMLQELLCCRK-DVLMILPYVAIVQEKISGLS-SFGIELGFF 411
Query: 776 VVELTGDVT--PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832
V E G P + S+ + T EK + S + S+ L+++DE+H++GE
Sbjct: 412 VEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMIGEG 471
Query: 833 DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPV 892
RG LE+ ++++ YT + +++G+S L N +DL +L Q Y + RPV
Sbjct: 472 SRGATLEMTLAKI----LYTSKTTQIIGMSATLNNVEDLQKFL----QAEY-YTSQFRPV 522
Query: 893 PLEVHI 898
L+ ++
Sbjct: 523 ELKEYL 528
Score = 37 (18.1 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 304 TDPDLIQHRTT 314
T+PDL++H T
Sbjct: 82 TNPDLLRHMPT 92
>UNIPROTKB|F1RVE2 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:CU467102 EMBL:CU468150 Ensembl:ENSSSCT00000010115
Uniprot:F1RVE2
Length = 1103
Score = 186 (70.5 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 51/175 (29%), Positives = 84/175 (48%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
N++ PT GKT+ AEI + C + I P A+V+E++A F L
Sbjct: 356 NLIYSLPTSGGKTLVAEILMLQELL-CRRKDALMILPYVAIVQEKIAGLS-SFGIELGFF 413
Query: 776 VVELTGDVT--PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832
V E G P I+ S+ + T EK + S + + L+++DE+H++GE
Sbjct: 414 VEEYAGSKGKFPPIKRREKKSLYIATIEKGHSLVNSLIETGRIGGLGLVVVDELHMIGEG 473
Query: 833 DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRP 887
RG LE+ ++++ YT + ++VG+S L N +DL +L + FRP
Sbjct: 474 SRGATLEMTLAKI----LYTSKTTQIVGMSATLNNVEDLQAFLRAEYYSSW-FRP 523
Score = 39 (18.8 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 678 QPLPVSALQQPQ 689
+ LPVS++++PQ
Sbjct: 235 EELPVSSIEEPQ 246
>UNIPROTKB|E1BMC0 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887
GO:GO:0043142 EMBL:DAAA02001581 EMBL:DAAA02001582 EMBL:DAAA02001583
IPI:IPI00687324 Ensembl:ENSBTAT00000002501 OMA:CFSDESI
Uniprot:E1BMC0
Length = 2728
Score = 183 (69.5 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 54/192 (28%), Positives = 101/192 (52%)
Query: 716 NVLLGAPTGSGKTIAAEITCF-RVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
N++ APT +GKT+ AE+ RV + K ++I P ++ KE+ + F+ +
Sbjct: 242 NLVYSAPTSAGKTLVAELLILKRVLEM--RKKALFILPFVSVAKEKKYYLQSLFQ-EVGI 298
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED- 833
KV G +P + SS + V T E+ +G+ N + + ++++DE+H+LG+
Sbjct: 299 KVDGYMGSTSPT-RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSH 357
Query: 834 RGPVLEVIVSRVNFISSYT-----------KRNVRLVGLSTALANAKDLATWLNITKQGM 882
RG +LE++++++ +I+ + V++VG+S L N + +A+WLN +
Sbjct: 358 RGYLLELLLTKICYITQKSASCQADLAIPLSNAVQIVGMSATLPNLELVASWLNAE---L 414
Query: 883 YNFRPSVRPVPL 894
Y+ RPVPL
Sbjct: 415 YH--TDFRPVPL 424
Score = 40 (19.1 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 23 RGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVY 57
R P ++ L+++ + + LNR SL+Y
Sbjct: 38 RAPSMQRLLSKKNNLCPTIIHQNTNMLNRTTSLIY 72
>WB|WBGene00020964 [details] [associations]
symbol:polq-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887 KO:K02349
EMBL:FO081687 EMBL:FO081686 RefSeq:NP_498250.3
ProteinModelPortal:A0FLQ6 PaxDb:A0FLQ6 EnsemblMetazoa:W03A3.2
GeneID:175810 KEGG:cel:CELE_W03A3.2 UCSC:W03A3.2 CTD:175810
WormBase:W03A3.2 InParanoid:A0FLQ6 OMA:EASIPEI NextBio:889766
Uniprot:A0FLQ6
Length = 1661
Score = 160 (61.4 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 42/186 (22%), Positives = 93/186 (50%)
Query: 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773
D +++ APT +GK+I AE+ ++V KV+++ P ++ +E++ + + +
Sbjct: 44 DQHLIFSAPTSAGKSIVAELLSWKVAST--GRKVLFVLPYISVAREKLH----QIQRCWR 97
Query: 774 KKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED 833
+ + + G + P + V T EK ++ + ++ + + +I++DE+H++ +
Sbjct: 98 RDDISVCGFIGPQASNPNEWLGAVCTIEKAASLTNRALSEDWFEEIGMIVVDEMHMVFDS 157
Query: 834 -RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPV 892
RG +E ++S+V + VR++G+S + + WL+ G F RP+
Sbjct: 158 SRGAHIEHMLSKVLLWNQSALEKVRIIGMSATIPELYRIGKWLD----GAKVFEARFRPI 213
Query: 893 PLEVHI 898
L+ HI
Sbjct: 214 VLQNHI 219
>WB|WBGene00016194 [details] [associations]
symbol:C28H8.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0004427 "inorganic diphosphatase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 EMBL:FO080703
eggNOG:COG4581 GeneTree:ENSGT00690000102154 PIR:A88470
RefSeq:NP_498283.1 ProteinModelPortal:Q09475 SMR:Q09475
STRING:Q09475 PaxDb:Q09475 EnsemblMetazoa:C28H8.3.1
EnsemblMetazoa:C28H8.3.2 GeneID:175834 KEGG:cel:CELE_C28H8.3
UCSC:C28H8.3.1 CTD:175834 WormBase:C28H8.3 HOGENOM:HOG000018763
InParanoid:Q09475 OMA:YARFRNK NextBio:889866 Uniprot:Q09475
Length = 1714
Score = 159 (61.0 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 44/170 (25%), Positives = 79/170 (46%)
Query: 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
N+ L+ APT +GKT + +V + VVY+AP KAL+ + +F + K
Sbjct: 800 NSALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVYVAPSKALINQVCGSVYARFRNKSMK 859
Query: 775 KVVELTGDVTPDI-QAISSASVIVTTPEKWDGV--SRSWQNRNYVQSVALIIIDEIHLLG 831
+ + L G +T + Q V++T PE + SR+ + +V + ++ DE+H +G
Sbjct: 860 RGISLFGTLTQEYSQNAMQCQVLITVPECLQELMLSRTPAVQKFVSHIKYVVFDEVHSIG 919
Query: 832 -EDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ 880
+ + E ++ + + LS + NA L WLN ++Q
Sbjct: 920 ASEESHIWEQLLLLIQ---------CPFLALSATIGNANKLHEWLNSSEQ 960
>UNIPROTKB|J9P0M0 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102154 EMBL:AAEX03010133 EMBL:AAEX03010134
EMBL:AAEX03010135 Ensembl:ENSCAFT00000044956 Uniprot:J9P0M0
Length = 1708
Score = 157 (60.3 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 53/172 (30%), Positives = 84/172 (48%)
Query: 714 DNN--VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771
DNN ++ APT SGKT A+ +V K+ E VVY+AP KALV + A +F
Sbjct: 772 DNNESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPTKALVNQVAATVHNRFTKS 831
Query: 772 LKKKVVELTGDVTPDIQAIS-SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL 830
L L G T D + + + V++T P ++ + S + +V+ + +I DE+H L
Sbjct: 832 LPNGEA-LCGVFTRDYRHDALNCQVLITVPACFEILLLSPHRQAWVKRIRYVIFDEVHCL 890
Query: 831 GEDRGP-VLE--VIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK 879
G + G V E +++ R F++ LS ++N + L WL K
Sbjct: 891 GGEIGAEVWEHLLVMIRCPFLA-----------LSATISNPEHLTEWLQSVK 931
>UNIPROTKB|E2QSY2 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003727
GO:GO:0051607 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 OMA:QDCTYAD
GO:GO:1900245 GO:GO:1900246 GeneTree:ENSGT00690000102154
EMBL:AAEX03010133 EMBL:AAEX03010134 EMBL:AAEX03010135
Ensembl:ENSCAFT00000014321 Uniprot:E2QSY2
Length = 1711
Score = 157 (60.3 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 53/172 (30%), Positives = 84/172 (48%)
Query: 714 DNN--VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771
DNN ++ APT SGKT A+ +V K+ E VVY+AP KALV + A +F
Sbjct: 775 DNNESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPTKALVNQVAATVHNRFTKS 834
Query: 772 LKKKVVELTGDVTPDIQAIS-SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL 830
L L G T D + + + V++T P ++ + S + +V+ + +I DE+H L
Sbjct: 835 LPNGEA-LCGVFTRDYRHDALNCQVLITVPACFEILLLSPHRQAWVKRIRYVIFDEVHCL 893
Query: 831 GEDRGP-VLE--VIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK 879
G + G V E +++ R F++ LS ++N + L WL K
Sbjct: 894 GGEIGAEVWEHLLVMIRCPFLA-----------LSATISNPEHLTEWLQSVK 934
>UNIPROTKB|F1P0I1 [details] [associations]
symbol:F1P0I1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:QDCTYAD GeneTree:ENSGT00690000102154 EMBL:AADN02016399
IPI:IPI00595626 Ensembl:ENSGALT00000015699 Uniprot:F1P0I1
Length = 1313
Score = 175 (66.7 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 60/209 (28%), Positives = 100/209 (47%)
Query: 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNN--VLLGAPTGSGKTIAAEI 733
+LQ + L++ + + + HF P T L DNN ++ APT SGKT A+
Sbjct: 718 QLQYMDYYLLREERNDPDPRVQHFIP-DTWQRELLDAVDNNESAVIVAPTSSGKTYASYY 776
Query: 734 TCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQA-ISS 792
+V K E VVY+AP KALV + V +F +L +V + G T D + + +
Sbjct: 777 CMEKVLKMSDEGVVVYVAPTKALVNQVVGSVYSRFTKKLPDGLV-VCGVFTRDYRHDVMN 835
Query: 793 ASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGP-VLEVIVSRVNFISSY 851
+ ++VT P+ + + S + +++ + + II DEIH LG + G V E ++ +
Sbjct: 836 SQILVTVPQCLEILMLSPRCQSWTKRIQYIIFDEIHCLGGEIGAEVWEHLLVTIR----- 890
Query: 852 TKRNVRLVGLSTALANAKDLATWLNITKQ 880
+ LS ++N L WL K+
Sbjct: 891 ----CPFLALSATISNPDHLTEWLQSVKR 915
Score = 39 (18.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 10/51 (19%), Positives = 26/51 (50%)
Query: 293 REYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNMRTRDLAITDL 343
R+ G ++++ L++ L+E +L+K+H+ + + + L +L
Sbjct: 638 RKQGNKPKDLSSAVQLMRRIHILLEKYQDLLEKSHLQKLSQYLQLLGFENL 688
Score = 38 (18.4 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 1 DVALTELVKLLIIDEVHLLHGDRGPVIE 28
D A+T L K DE+ H R P+ E
Sbjct: 466 DPAVTSLAKYKEFDELRHWHSGR-PLSE 492
>TAIR|locus:2020573 [details] [associations]
symbol:EMB25 "EMBRYO DEFECTIVE 25" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=IMP] [GO:0010497 "plasmodesmata-mediated intercellular
transport" evidence=NAS;IMP] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0016441 "posttranscriptional gene silencing"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0016556 "mRNA modification" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009570 GO:GO:0003676
GO:GO:0009793 GO:GO:0031047 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0008026 EMBL:AC002062
GO:GO:0003724 GO:GO:0010497 eggNOG:COG4581 GO:GO:0016441
HOGENOM:HOG000245391 EMBL:AK316759 EMBL:AF387007 IPI:IPI00538730
PIR:D96723 RefSeq:NP_177164.1 UniGene:At.35348
ProteinModelPortal:B9DFG3 SMR:B9DFG3 PaxDb:B9DFG3 PRIDE:B9DFG3
EnsemblPlants:AT1G70070.1 GeneID:843343 KEGG:ath:AT1G70070
GeneFarm:2280 TAIR:At1g70070 InParanoid:Q94EZ6 OMA:PSYGMVL
PhylomeDB:B9DFG3 ProtClustDB:CLSN2682754 Genevestigator:B9DFG3
Uniprot:B9DFG3
Length = 1171
Score = 154 (59.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 58/190 (30%), Positives = 90/190 (47%)
Query: 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
++V++ APT SGKT+ AE V ++ Y PLKAL ++ +++ F
Sbjct: 170 SSVVVSAPTSSGKTLIAEAAA--VSTVAKGRRLFYTTPLKALSNQKFREFRETFG---DD 224
Query: 775 KVVELTGD--VTPDIQ-AISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831
V LTGD + D Q I + ++ + G++ S +V + I++DE+H L
Sbjct: 225 NVGLLTGDSAINKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVDA---IVLDEVHYLS 281
Query: 832 E-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVR 890
+ RG V E IV Y + V+L+ LS +AN +LA W+ G S R
Sbjct: 282 DISRGTVWEEIVI-------YCPKEVQLICLSATVANPDELAGWIGEI-HGKTELVTSTR 333
Query: 891 -PVPLEVHIS 899
PVPL + S
Sbjct: 334 RPVPLTWYFS 343
Score = 50 (22.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 49 LNRIQSLVYDTAYHTNENLLICAPTGAGKTNVA 81
+++ Q L + A+ ++++ APT +GKT +A
Sbjct: 155 IDKFQRLAIE-AFLRGSSVVVSAPTSSGKTLIA 186
Score = 38 (18.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 677 LQPLPVSALQQPQYESLYKFSHFNPIQTQIFH 708
+ LPV +L S +KF HF + + H
Sbjct: 1 MNTLPVVSLTA---SSSFKFFHFPSLHRSLSH 29
>UNIPROTKB|Q10701 [details] [associations]
symbol:helY "Probable helicase HelY" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842578 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:G70767 RefSeq:NP_216608.1 RefSeq:NP_336620.1
RefSeq:YP_006515507.1 ProteinModelPortal:Q10701 SMR:Q10701
PRIDE:Q10701 EnsemblBacteria:EBMYCT00000003887
EnsemblBacteria:EBMYCT00000069683 GeneID:13316898 GeneID:887736
GeneID:924573 KEGG:mtc:MT2153 KEGG:mtu:Rv2092c KEGG:mtv:RVBD_2092c
PATRIC:18126496 TubercuList:Rv2092c HOGENOM:HOG000245391 KO:K03727
OMA:ANESAWQ ProtClustDB:CLSK791623 Uniprot:Q10701
Length = 906
Score = 136 (52.9 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 41/155 (26%), Positives = 78/155 (50%)
Query: 745 AKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWD 804
+K Y PLKAL ++ D ++ + ++ LTGD++ + +A V+V T E
Sbjct: 61 SKCFYTTPLKALSNQKHTDLTARYG---RDQIGLLTGDLSVN----GNAPVVVMTTEVLR 113
Query: 805 GVSRSWQNRNYVQSVALIIIDEIHLLGED-RGPVLEVIVSRVNFISSYTKRNVRLVGLST 863
+ + + +Q ++ +++DE+H L + RGPV E ++ ++ +VR+V LS
Sbjct: 114 NML--YADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQL-------PDDVRVVSLSA 164
Query: 864 ALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHI 898
++NA++ W+ + RPVPL H+
Sbjct: 165 TVSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHV 199
Score = 130 (50.8 bits), Expect = 0.00023, P = 0.00023
Identities = 37/129 (28%), Positives = 67/129 (51%)
Query: 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
+ VL+ APTG+GKT+ E +K Y PLKAL ++ D ++ +
Sbjct: 33 HGVLVCAPTGAGKTVVGEFAVHLAL--AAGSKCFYTTPLKALSNQKHTDLTARYG---RD 87
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED- 833
++ LTGD++ + +A V+V T E + + + +Q ++ +++DE+H L +
Sbjct: 88 QIGLLTGDLSVN----GNAPVVVMTTEVLRNML--YADSPALQGLSYVVMDEVHFLADRM 141
Query: 834 RGPVLEVIV 842
RGPV E ++
Sbjct: 142 RGPVWEEVI 150
Score = 64 (27.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 59 TAYHTNENLLICAPTGAGKTNVAMLTI 85
+A +L+CAPTGAGKT V +
Sbjct: 27 SALERGHGVLVCAPTGAGKTVVGEFAV 53
>POMBASE|SPCC550.03c [details] [associations]
symbol:SPCC550.03c "Ski complex RNA helicase Ski2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0055087 "Ski complex" evidence=ISO]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
[GO:2000765 "regulation of cytoplasmic translation" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC550.03c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:2000765
EMBL:CU329672 GO:GO:0071276 GO:GO:0071585 GO:GO:0003723
GO:GO:0006402 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003724 eggNOG:COG4581 GO:GO:0055087 PIR:T41378
RefSeq:NP_588095.1 ProteinModelPortal:O59801 STRING:O59801
EnsemblFungi:SPCC550.03c.1 GeneID:2538841 KEGG:spo:SPCC550.03c
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
NextBio:20800023 Uniprot:O59801
Length = 1213
Score = 163 (62.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 66/263 (25%), Positives = 119/263 (45%)
Query: 656 SMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQY----ESLYKFSHFNPIQTQI-FHCL 710
+++ KH + +L P +++ L P ++ +QP Y +S +F + ++
Sbjct: 219 NVNSKHSEIDDLLPDKRSIVSLPPSTLNLHKQPDYAHVVDSSAPIENFQQLVPEMALDFP 278
Query: 711 YHTDN---NVLLGAPTGSGKTIAAEITCFRV--------FKQCPEAKVVYIAPLKALVKE 759
+ DN + G +AA + + Q K +Y +P+KAL +
Sbjct: 279 FELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTKAIYTSPIKALSNQ 338
Query: 760 RVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQNRNYVQ 817
+ D+K KFE V LTGDV Q S ++ T E + RS ++ + ++
Sbjct: 339 KFRDFKHKFE-----DVGILTGDV----QVNPEGSCLLMTTE----ILRSMLYRGADLIR 385
Query: 818 SVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLN 876
V +I DE+H + + +RG V E ++ + +V L+ LS + N K+ A+W+
Sbjct: 386 DVEFVIFDEVHYVNDLERGVVWEEVIIML-------PPHVTLILLSATVPNTKEFASWVG 438
Query: 877 ITKQ-GMYNFRPSVRPVPLEVHI 898
TK+ +Y RPVPLE ++
Sbjct: 439 RTKKKNIYVISTLKRPVPLEHYL 461
Score = 39 (18.8 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 965 DAEMDNIVDNIKDSNLKL 982
++ +DN+ I D NL+L
Sbjct: 999 ESNIDNLSSYISDQNLEL 1016
>SGD|S000002699 [details] [associations]
symbol:HRQ1 "3'-5'DNA helicase that has DNA strand annealing
activity" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IDA] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006950 "response to stress" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000002699 GO:GO:0005524 GO:GO:0005634
GO:GO:0006950 EMBL:BK006938 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000733
EMBL:U51031 RefSeq:NP_010581.3 GeneID:851889 KEGG:sce:YDR295C
eggNOG:COG1205 HOGENOM:HOG000163591 OrthoDB:EOG4BVW2R
InterPro:IPR018973 Pfam:PF09369 PIR:S70120 RefSeq:NP_010577.3
ProteinModelPortal:Q05549 SMR:Q05549 MINT:MINT-2493111
STRING:Q05549 PaxDb:Q05549 EnsemblFungi:YDR291W GeneID:851885
KEGG:sce:YDR291W CYGD:YDR291w KO:K06877 OMA:CKENSLV NextBio:969859
Genevestigator:Q05549 GermOnline:YDR291W Uniprot:Q05549
Length = 1077
Score = 149 (57.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 86/342 (25%), Positives = 150/342 (43%)
Query: 622 EESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLI-VPELHPPHTNL-LELQP 679
+ES M+IP I M ++ L S ++ KH +P + L EL P
Sbjct: 222 QESNEMSIPNYSNNSVITTIPQMIEK-LKSTEFYASQIKHCFTIPSRTAKYKGLCFELAP 280
Query: 680 LPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVF 739
Q ++E+ Y SH Q + L H NV++ T SGK++ ++ +
Sbjct: 281 ---EVYQGMEHENFY--SH----QADAINSL-HQGENVIITTSTSSGKSLIYQLAAIDLL 330
Query: 740 KQCPEAKVVYIAPLKALVKERVADWKVKFEA--RLKKKVVEL-TGDVTPDIQAI--SSAS 794
+ PE+ +YI P KAL +++ +KV LK VV+ GD P+ +A +A
Sbjct: 331 LKDPESTFMYIFPTKALAQDQKRAFKVILSKIPELKNAVVDTYDGDTEPEERAYIRKNAR 390
Query: 795 VIVTTPEK-WDGVSRSWQN-RNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISSYT 852
VI T P+ + + N R+++ + L+++DE+H+ G + +++ R+ +
Sbjct: 391 VIFTNPDMIHTSILPNHANWRHFLYHLKLVVVDELHIYKGLFGSHVALVMRRLLRLCHCF 450
Query: 853 KRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFP-GKQYCPRMA 911
N L +S + AT L Q M + + V L +H G P G ++ +
Sbjct: 451 YENSGLQFISCS-------AT-LKSPVQHMKDMF-GINEVTL-IHEDGSPTGAKH---LV 497
Query: 912 KMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILAC 953
N PI + QH ++ I S++ +L ++ TI C
Sbjct: 498 VWNPPI---LPQHERKRENFIRESAKILVQLILNNVRTIAFC 536
>TAIR|locus:2026001 [details] [associations]
symbol:MTR4 "homolog of yeast MTR4" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0031125 "rRNA 3'-end processing" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010212 "response to ionizing
radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AC007258 UniGene:At.74832 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0031125 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:AK176836 IPI:IPI00536033 PIR:E96621
RefSeq:NP_176185.1 UniGene:At.43462 ProteinModelPortal:Q9XIF2
SMR:Q9XIF2 PaxDb:Q9XIF2 PRIDE:Q9XIF2 EnsemblPlants:AT1G59760.1
GeneID:842269 KEGG:ath:AT1G59760 TAIR:At1g59760 InParanoid:Q9XIF2
PhylomeDB:Q9XIF2 ProtClustDB:CLSN2679700 ArrayExpress:Q9XIF2
Genevestigator:Q9XIF2 Uniprot:Q9XIF2
Length = 988
Score = 148 (57.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 51/164 (31%), Positives = 85/164 (51%)
Query: 679 PLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRV 738
PL S +P + + F+ + Q++ CL + ++ V++ A T +GKT+ A
Sbjct: 50 PLAPSVHNKPPAKD-FPFT-LDSFQSEAIKCLDNGES-VMVSAHTSAGKTVVASYAIAMS 106
Query: 739 FKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVT 798
K+ +V+Y +P+KAL ++ D+K +F V +TGDVT D +AS +V
Sbjct: 107 LKE--NQRVIYTSPIKALSNQKYRDFKEEFS-----DVGLMTGDVTID----PNASCLVM 155
Query: 799 TPEKWDGVSRSWQNRN--YVQSVALIIIDEIHLLGE-DRGPVLE 839
T E + RS Q + ++ VA II DE+H + + +RG V E
Sbjct: 156 TTE----ILRSMQYKGSEIMREVAWIIFDEVHYMRDSERGVVWE 195
>ZFIN|ZDB-GENE-040724-232 [details] [associations]
symbol:si:rp71-1p14.5 "si:rp71-1p14.5" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 ZFIN:ZDB-GENE-040724-232 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0003887 EMBL:CU928848
EMBL:CU695000 IPI:IPI00492363 Ensembl:ENSDART00000065556
Uniprot:F1Q4P4
Length = 2576
Score = 169 (64.5 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 52/190 (27%), Positives = 101/190 (53%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKF-EARLKK 774
N++ APT +GKT+ +E+ + + + K ++I P ++ +E++ + F EA ++
Sbjct: 317 NLVYSAPTSAGKTLVSELLILKRVLETRQ-KAMFILPFVSVAREKMFYLQNVFQEAGIR- 374
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED- 833
VE T S+ V V T EK +G+ + + + +++DE+H++G+
Sbjct: 375 --VEGYMGSTSAAGGFSALDVAVCTIEKANGLVNRLIEEDKLDLLGTVVVDELHMVGDSG 432
Query: 834 RGPVLEVIVSRVNFISSYTK-RN--------VRLVGLSTALANAKDLATWLNITKQGMYN 884
RG +LE++++++ +I+ T RN V+++G+S L N LA WL+ +Y+
Sbjct: 433 RGYLLELLLTKIRYIAQKTATRNSGQSTSTGVQIIGMSATLPNLDLLARWLSAE---LYS 489
Query: 885 FRPSVRPVPL 894
+ RPVPL
Sbjct: 490 --TNYRPVPL 497
Score = 39 (18.8 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 954 ETNPKMWVHTSDAEMDNIVD 973
E PK + +D++++NI++
Sbjct: 1480 EAKPKYNISLTDSQLENILN 1499
>RGD|1560014 [details] [associations]
symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 60"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003725
"double-stranded RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1560014 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00690000102154 IPI:IPI00358301
Ensembl:ENSRNOT00000019667 Uniprot:F1M4N8
Length = 1304
Score = 164 (62.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 52/174 (29%), Positives = 90/174 (51%)
Query: 714 DN--NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771
DN + ++ APT SGKT A+ +V K+ E VVY+AP KALV + A + ++
Sbjct: 368 DNYESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPTKALVNQVAATVQNRYTKN 427
Query: 772 LKKKVVELTGDVTPDI--QAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHL 829
+ V L G T D +A++S V++T P ++ + + +N+V+ + +I DE+H
Sbjct: 428 MPAGEV-LCGVFTSDYHHEALNS-QVLITMPACFEILLLAPHRQNWVKRIRYVIFDEVHC 485
Query: 830 LG-EDRGPVLE--VIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ 880
+G E R + E +++ R F++ LS ++N + L WL K+
Sbjct: 486 IGGEIRAEIWEHLLVMIRCPFLA-----------LSATISNPQHLTEWLQSVKR 528
Score = 37 (18.1 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 1011 LSSKENQNVINRSTSANGNFD 1031
+S KE + ++ +GNFD
Sbjct: 1169 MSCKEGRMAVSPFVCLSGNFD 1189
>UNIPROTKB|Q5H9U9 [details] [associations]
symbol:DDX60L "Probable ATP-dependent RNA helicase
DDX60-like" species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 HOGENOM:HOG000169263 HOVERGEN:HBG107797
EMBL:AL832950 EMBL:CR933601 EMBL:AC079926 EMBL:AC093888
EMBL:AK055595 IPI:IPI00853133 IPI:IPI00935252 RefSeq:NP_001012985.1
UniGene:Hs.535011 ProteinModelPortal:Q5H9U9 STRING:Q5H9U9
PhosphoSite:Q5H9U9 DMDM:74755482 PaxDb:Q5H9U9 PRIDE:Q5H9U9
Ensembl:ENST00000260184 Ensembl:ENST00000505890
Ensembl:ENST00000511577 GeneID:91351 KEGG:hsa:91351 UCSC:uc003irq.4
CTD:91351 GeneCards:GC04M169277 HGNC:HGNC:26429 HPA:HPA043211
neXtProt:NX_Q5H9U9 PharmGKB:PA162383445 InParanoid:Q5H9U9
OMA:AQDSVYL GenomeRNAi:91351 NextBio:77184 ArrayExpress:Q5H9U9
Bgee:Q5H9U9 CleanEx:HS_DDX60L Genevestigator:Q5H9U9 Uniprot:Q5H9U9
Length = 1706
Score = 148 (57.2 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 52/185 (28%), Positives = 87/185 (47%)
Query: 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKE 759
N Q ++ + ++ V++ APT SGKT A+ +V ++ VVY+AP K+LV +
Sbjct: 745 NAWQQELLDVVDKNESAVIV-APTSSGKTYASYYCMEKVLRESDVGVVVYVAPAKSLVGQ 803
Query: 760 RVADWKVKFEARLKKKVVELTGDVTPDI-QAISSASVIVTTPEKWDGVSRSWQNRNYVQS 818
A + +F L L G T D + + V++T PE ++ + + + +V+
Sbjct: 804 VAATVENRFTKTLPAGRT-LCGAFTRDYCHNVLNCQVLITVPECFEILLLAPHRQKWVER 862
Query: 819 VALIIIDEIHLLGEDRGPV---LEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWL 875
+ +I DE+H LG + G L +++ R F LV LS + N L WL
Sbjct: 863 IRYVIFDEVHYLGREVGAKFWELLLVIIRCPF----------LV-LSATINNPNLLTKWL 911
Query: 876 NITKQ 880
KQ
Sbjct: 912 QSVKQ 916
>UNIPROTKB|Q8IY21 [details] [associations]
symbol:DDX60 "Probable ATP-dependent RNA helicase DDX60"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0009615 "response to
virus" evidence=IDA] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:1900245 "positive regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AC068989 EMBL:BC007820
EMBL:BC038115 EMBL:AK001649 IPI:IPI00217606 RefSeq:NP_060101.3
UniGene:Hs.591710 ProteinModelPortal:Q8IY21 SMR:Q8IY21
IntAct:Q8IY21 STRING:Q8IY21 PhosphoSite:Q8IY21 DMDM:296439377
PaxDb:Q8IY21 PRIDE:Q8IY21 Ensembl:ENST00000393743 GeneID:55601
KEGG:hsa:55601 UCSC:uc003irp.3 CTD:55601 GeneCards:GC04M169137
HGNC:HGNC:25942 HPA:HPA046952 MIM:613974 neXtProt:NX_Q8IY21
PharmGKB:PA162383444 eggNOG:COG4581 HOGENOM:HOG000169263
HOVERGEN:HBG107797 InParanoid:Q8IY21 OMA:QDCTYAD OrthoDB:EOG4XSKP0
PhylomeDB:Q8IY21 GenomeRNAi:55601 NextBio:60142 ArrayExpress:Q8IY21
Bgee:Q8IY21 CleanEx:HS_DDX60 Genevestigator:Q8IY21 GO:GO:1900245
GO:GO:1900246 Uniprot:Q8IY21
Length = 1712
Score = 158 (60.7 bits), Expect = 5.7e-06, Sum P(4) = 5.7e-06
Identities = 48/170 (28%), Positives = 86/170 (50%)
Query: 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773
+ + ++ APT SGKT A+ +V K+ + VVY+AP KALV + A + +F L
Sbjct: 778 NESAVIVAPTSSGKTYASYYCMEKVLKESDDGVVVYVAPTKALVNQVAATVQNRFTKNLP 837
Query: 774 KKVVELTGDVTPDIQAIS-SASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE 832
V L G T + + + + V++T P ++ + + +N+V+ + +I DE+H LG
Sbjct: 838 SGEV-LCGVFTREYRHDALNCQVLITVPACFEILLLAPHRQNWVKKIRYVIFDEVHCLGG 896
Query: 833 DRGP-VLE--VIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITK 879
+ G + E +++ R F++ LS ++N + L WL K
Sbjct: 897 EIGAEIWEHLLVMIRCPFLA-----------LSATISNPEHLTEWLQSVK 935
Score = 63 (27.2 bits), Expect = 5.7e-06, Sum P(4) = 5.7e-06
Identities = 32/137 (23%), Positives = 63/137 (45%)
Query: 352 IKHNDIELFTEHMTK-VLDDVGILSMISQAHEFEQLKVRDEELHELDNLTQEC-CEIPIR 409
++ N + F++ M++ +L+++ S ++F + + L + D+L C CEI +
Sbjct: 1 MERNVLTTFSQEMSQLILNEMPKAEYSSLFNDFVESEFF---LIDGDSLLITCICEISFK 57
Query: 410 GGSENVHG--KVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEITLH-RNNAI 466
G +N+H V L L+S+G + D EY N ++ + LH + N
Sbjct: 58 PG-QNLHFFYLVERYLVDLISKGGQFTIVFFKDAEYAYFNFPELLSLRTALILHLQKNTT 116
Query: 467 MAARFLKFALMFETKQW 483
+ R F+ +K+W
Sbjct: 117 IDVR-TTFSRCL-SKEW 131
Score = 37 (18.1 bits), Expect = 5.7e-06, Sum P(4) = 5.7e-06
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 480 TKQWPHETPLRQIKLVTN 497
T+ WP + +R++ VT+
Sbjct: 250 TQVWPEGSDIRRVFCVTS 267
Score = 37 (18.1 bits), Expect = 5.7e-06, Sum P(4) = 5.7e-06
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 1011 LSSKENQNVINRSTSANGNFD 1031
+S KE + I+ +GNFD
Sbjct: 1577 MSCKEGRVAISPFVCLSGNFD 1597
>UNIPROTKB|E3W982 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC096768 HGNC:HGNC:18536 IPI:IPI00965450
ProteinModelPortal:E3W982 SMR:E3W982 Ensembl:ENST00000508591
UCSC:uc003hon.1 ArrayExpress:E3W982 Bgee:E3W982 Uniprot:E3W982
Length = 489
Score = 150 (57.9 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 40/138 (28%), Positives = 69/138 (50%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
N++ PT GKT+ AEI + C + V+ I P A+V+E+++ F L
Sbjct: 354 NLIYSLPTSGGKTLVAEILMLQELLCCRK-DVLMILPYVAIVQEKISGLS-SFGIELGFF 411
Query: 776 VVELTGDVT--PDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832
V E G P + S+ + T EK + S + S+ L+++DE+H++GE
Sbjct: 412 VEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMIGEG 471
Query: 833 DRGPVLEVIVSRVNFISS 850
RG LE+ ++++ + SS
Sbjct: 472 SRGATLEMTLAKILYTSS 489
Score = 37 (18.1 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 304 TDPDLIQHRTT 314
T+PDL++H T
Sbjct: 82 TNPDLLRHMPT 92
>POMBASE|SPAC17H9.02 [details] [associations]
symbol:SPAC17H9.02 "TRAMP complex ATP-dependent RNA
helicase (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016078 "tRNA catabolic
process" evidence=ISO] [GO:0031499 "TRAMP complex" evidence=ISO]
[GO:0043630 "ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic process" evidence=ISO]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17H9.02 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GO:GO:0003676 GO:GO:0031499
GO:GO:0043630 GO:GO:0016078 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 PIR:T37868 RefSeq:NP_593572.1
ProteinModelPortal:O13799 STRING:O13799 EnsemblFungi:SPAC17H9.02.1
GeneID:2542173 KEGG:spo:SPAC17H9.02 OMA:FARWISE NextBio:20803244
Uniprot:O13799
Length = 1030
Score = 144 (55.7 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 63/247 (25%), Positives = 115/247 (46%)
Query: 597 EDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLP-NQYLIRAMSDRYLGSVVQH 655
ED S F E ++ + ++E ++ LSD + ++YL + D+ +H
Sbjct: 36 EDEKSSFSNSEEESIIENLSDSSVNKEYAKNSLKLSDAVSESKYLNPLLKDK------RH 89
Query: 656 SMSFK-H-LIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHT 713
SF H ++VP+ + + PL P ++ Y F +P Q+ C+
Sbjct: 90 DRSFALHKVVVPDDY-------DYIPLNKHIPSDPPAKT-YPFE-LDPFQSTAIKCVERM 140
Query: 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773
++ VL+ A T +GKT+ AE + K +V+Y +P+K+L ++ + +F
Sbjct: 141 ES-VLVSAHTSAGKTVIAEYAIAQALKN--RQRVIYTSPIKSLSNQKYRELLSEFG---- 193
Query: 774 KKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE- 832
V +TGDV+ + SAS ++ T E + ++N + +A +I DE+H + +
Sbjct: 194 -DVGLMTGDVSIN----PSASCLIMTTEILRAML--YKNSEIMHEIAWVIFDEVHYMRDK 246
Query: 833 DRGPVLE 839
DRG V E
Sbjct: 247 DRGVVWE 253
>ASPGD|ASPL0000001605 [details] [associations]
symbol:AN10757 species:162425 "Emericella nidulans"
[GO:0035861 "site of double-strand break" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000733 "DNA strand renaturation" evidence=IEA] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IEA] [GO:0032508 "DNA duplex unwinding"
evidence=IEA] [GO:0070914 "UV-damage excision repair" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:BN001301 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014939 SMART:SM01075 OMA:DELHVYK
InterPro:IPR018973 Pfam:PF09369 ProteinModelPortal:C8V3J7
EnsemblFungi:CADANIAT00007106 Uniprot:C8V3J7
Length = 1210
Score = 144 (55.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 51/201 (25%), Positives = 98/201 (48%)
Query: 684 ALQQPQYESLYK---FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFK 740
AL Q +LY + F Q + + L H NV++ T SGK++ ++ +
Sbjct: 382 ALSQDLVNALYNTKGITRFYSHQAEAINHL-HDGKNVIVSTSTSSGKSLIYQVPMLHELE 440
Query: 741 QCPEAKVVYIAPLKALVKERVADWK--VKFEARLKKKVVE-LTGDVTP--DIQAI-SSAS 794
Q +++ +YI P KAL +++ + +++ L+ +VE GD TP + I A
Sbjct: 441 QDSDSRGMYIFPTKALAQDQKRSMQELLQYLNSLQGTMVETFDGD-TPMANRNLIRDEAR 499
Query: 795 VIVTTPEKWDGV----SRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFI-S 849
+I T P+ SW R ++Q++ +++DE+H+ G + +I+ R+ I +
Sbjct: 500 IIFTNPDMLHITILPQESSW--RTFLQNLKFVVVDELHVYNGLFGSHVALIMRRLRRICA 557
Query: 850 SYTKRNVRLVGLSTALANAKD 870
+ R+VR + S +AN ++
Sbjct: 558 AVGNRHVRFISCSATVANPEE 578
>UNIPROTKB|P96901 [details] [associations]
symbol:lhr "PROBABLE ATP-DEPENDENT HELICASE LHR (LARGE
HELICASE-RELATED PROTEIN)" species:83332 "Mycobacterium
tuberculosis H37Rv" [GO:0005618 "cell wall" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
InterPro:IPR013701 Pfam:PF00270 Pfam:PF00271 Pfam:PF08494
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003676 EMBL:BX842582 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000238716 KO:K03724
OMA:PRLVWDR EMBL:CP003248 PIR:A70982 RefSeq:NP_217813.1
RefSeq:NP_337924.1 RefSeq:YP_006516773.1
EnsemblBacteria:EBMYCT00000002553 EnsemblBacteria:EBMYCT00000072323
GeneID:13318119 GeneID:887503 GeneID:926649 KEGG:mtc:MT3395
KEGG:mtu:Rv3296 KEGG:mtv:RVBD_3296 PATRIC:18129218
TubercuList:Rv3296 ProtClustDB:CLSK792412 Uniprot:P96901
Length = 1513
Score = 117 (46.2 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 61/225 (27%), Positives = 103/225 (45%)
Query: 743 PEA-KVVYIAPLKALVKERVADWKVKFEA--RLKKK---------VVELTGDVTPDI--Q 788
P A +V+Y++PLKAL + + + RL ++ V +GD P + Q
Sbjct: 76 PAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDTPPALRRQ 135
Query: 789 AISSA-SVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED-RGPVLEVIVSRVN 846
+S V++TTPE + S R + V +IIDEIH + RG L + + R++
Sbjct: 136 LVSQPPDVLITTPESLFLMLTS-AARQTLTGVQTVIIDEIHAIAATKRGAHLALSLERLD 194
Query: 847 FISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPLEVHISGFPGKQY 906
+SS +R + +GLS + ++LA +L+ P+ + V L V + P
Sbjct: 195 DLSS--RRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQV---P---- 245
Query: 907 CPRMAKM-NKPIYTAIKQH-----SPEKPVMIFVSSRRQT-RLTA 944
P MA + + I+ ++ ++F +SRR RLTA
Sbjct: 246 VPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTA 290
Score = 79 (32.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 683 SALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCF------ 736
SAL + + S F+ Q + + DN +++ APTGSGKT+AA +
Sbjct: 13 SALTRDWFTST--FAAPTAAQASAWAAIADGDNTLVI-APTGSGKTLAAFLWALDSLAGS 69
Query: 737 RVFKQCPEA-KVVYIAPLKAL 756
+ P A +V+Y++PLKAL
Sbjct: 70 EPMSERPAATRVLYVSPLKAL 90
>DICTYBASE|DDB_G0275633 [details] [associations]
symbol:DDB_G0275633 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275633 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_643574.1
ProteinModelPortal:Q86IE2 STRING:Q86IE2 EnsemblProtists:DDB0233453
GeneID:8620161 KEGG:ddi:DDB_G0275633 InParanoid:Q86IE2
ProtClustDB:CLSZ2444279 Uniprot:Q86IE2
Length = 1128
Score = 140 (54.3 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 62/215 (28%), Positives = 100/215 (46%)
Query: 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753
Y F +P Q C+ ++ VL+ A T +GKT+ AE + + +V+Y +P+
Sbjct: 208 YPFK-LDPFQATSIACIERNES-VLVSAHTSAGKTVVAEYSIATALRD--GQRVIYTSPI 263
Query: 754 KALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQ 811
KAL ++ D + F+ V +TGD+T I A +AS +V T E + RS ++
Sbjct: 264 KALSNQKFRDLQETFQ-----DVGLMTGDIT--INA--NASCLVMTTE----ILRSMLYR 310
Query: 812 NRNYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKD 870
++ V+ +I DEIH L + +RG V E + + K + A A
Sbjct: 311 GSETMREVSWVIFDEIHYLRDKERGVVWE---ETIILLPDSVKFVFLSATIPNAREFAAW 367
Query: 871 LATWLNITKQGMYNFRPSVRPVPLEVHI--SGFPG 903
+A I KQ + RP+PL+ +I SG G
Sbjct: 368 IA---KIHKQPCHVVYTEYRPIPLQHYIFPSGGDG 399
>ASPGD|ASPL0000004985 [details] [associations]
symbol:AN6007 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:BN001301 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000102 GO:GO:0008026 eggNOG:COG4581
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
RefSeq:XP_663611.1 ProteinModelPortal:Q5B0C3 STRING:Q5B0C3
EnsemblFungi:CADANIAT00007011 GeneID:2871132 KEGG:ani:AN6007.2
Uniprot:Q5B0C3
Length = 1293
Score = 141 (54.7 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 45/149 (30%), Positives = 74/149 (49%)
Query: 701 PIQTQIFH--CLYHTDN--NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756
P + F +YH +N +V + A T +GKT+ AE K K +Y +P+KAL
Sbjct: 320 PFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHM--TKAIYTSPIKAL 377
Query: 757 VKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQNRN 814
++ D+K F+ V LTGDV Q AS ++ T E + RS ++ +
Sbjct: 378 SNQKFRDFKNTFD-----DVGILTGDV----QINPEASCLIMTTE----ILRSMLYRGAD 424
Query: 815 YVQSVALIIIDEIHLLGE-DRGPVLEVIV 842
++ V +I DE+H + + +RG V E ++
Sbjct: 425 LIRDVEFVIFDEVHYVNDLERGVVWEEVI 453
Score = 125 (49.1 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 36/129 (27%), Positives = 67/129 (51%)
Query: 774 KKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQNRNYVQSVALIIIDEIHLLG 831
K + G +T D+Q AS ++ T E + RS ++ + ++ V +I DE+H +
Sbjct: 386 KNTFDDVGILTGDVQINPEASCLIMTTE----ILRSMLYRGADLIRDVEFVIFDEVHYVN 441
Query: 832 E-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQ-GMYNFRPSV 889
+ +RG V E ++ + +V L+ LS + N ++ A+W+ TK+ +Y +
Sbjct: 442 DLERGVVWEEVIIML-------PEHVTLILLSATVPNTQEFASWVGRTKKKDIYVISTAK 494
Query: 890 RPVPLEVHI 898
RPVPLE ++
Sbjct: 495 RPVPLEHYL 503
Score = 52 (23.4 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 58 DTAYH--TNENLLICAPTGAGKTNVAMLTIAHQIKQHISQ 95
+ YH +++ + A T AGKT VA IA K H+++
Sbjct: 329 EAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAK-HMTK 367
Score = 51 (23.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 911 AKMNKPIYTAIKQHSPEK---PVMIFVSSRRQTRLTAIDLITILACETNPKMWVH 962
A +K ++ + QH ++ P IFV S+++ A L C + K +H
Sbjct: 608 AAQDKTVWVQVVQHLRKENLLPACIFVFSKKRCEQNADSLSNQDFCNASEKSLIH 662
>WB|WBGene00012342 [details] [associations]
symbol:mtr-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0040011 InterPro:IPR018247
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0040020 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0040022 GO:GO:0008026 eggNOG:COG4581 EMBL:Z70271 PIR:T26282
RefSeq:NP_501757.1 ProteinModelPortal:Q23223 SMR:Q23223
MINT:MINT-6670291 STRING:Q23223 PaxDb:Q23223 EnsemblMetazoa:W08D2.7
GeneID:177824 KEGG:cel:CELE_W08D2.7 CTD:177824 WormBase:W08D2.7
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 InParanoid:Q23223
KO:K12598 OMA:ENFQKAM NextBio:898538 InterPro:IPR025696
Pfam:PF13234 Uniprot:Q23223
Length = 1026
Score = 138 (53.6 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 56/197 (28%), Positives = 95/197 (48%)
Query: 669 PPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNN--VLLGAPTGSG 726
PP+ EL+ S + +Y Y F + Q Q C+ DNN VL+ A T +G
Sbjct: 102 PPNAEFAELREN--SGTEPAKY---YPFQ-LDAFQKQAILCI---DNNQSVLVSAHTSAG 152
Query: 727 KTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVT-- 784
KT+ A + ++ + +V+Y +P+KAL ++ + + +F K V +TGDVT
Sbjct: 153 KTVVATYAIAKCLRE--KQRVIYTSPIKALSNQKYRELEEEF-----KDVGLMTGDVTLN 205
Query: 785 PDIQAISSASVIVTTPEKWDGVSRS--WQNRNYVQSVALIIIDEIHLLGE-DRGPVLE-- 839
PD AS +V T E + RS ++ ++ V ++ DEIH + + +RG V E
Sbjct: 206 PD------ASCLVMTTE----ILRSMLYRGSEIMKEVGWVVYDEIHYMRDKERGVVWEET 255
Query: 840 VIVSRVNFISSYTKRNV 856
+I+ N ++ +
Sbjct: 256 IILMSKNIKQAFLSATI 272
>POMBASE|SPAC9.05 [details] [associations]
symbol:fml1 "ATP-dependent 3' to 5' DNA helicase, FANCM
ortholog Fml1" species:4896 "Schizosaccharomyces pombe" [GO:0000732
"strand displacement" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=IDA] [GO:0031297 "replication
fork processing" evidence=IMP] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
[GO:0071821 "FANCM-MHF complex" evidence=ISS] [GO:0071932
"replication fork reversal" evidence=IDA] [GO:2000042 "negative
regulation of double-strand break repair via homologous
recombination" evidence=IMP] [GO:0003690 "double-stranded DNA
binding" evidence=ISS] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC9.05 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000732 GO:GO:0009378
GO:GO:0071821 eggNOG:COG1111 GO:GO:0033567 GO:GO:0071932 PIR:T39190
RefSeq:NP_593348.2 ProteinModelPortal:Q9UT23 STRING:Q9UT23
EnsemblFungi:SPAC9.05.1 GeneID:2543668 KEGG:spo:SPAC9.05
HOGENOM:HOG000076770 KO:K14635 OMA:RTENSID OrthoDB:EOG4JHGPV
NextBio:20804674 GO:GO:2000042 Uniprot:Q9UT23
Length = 834
Score = 136 (52.9 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 58/202 (28%), Positives = 90/202 (44%)
Query: 672 TNLLELQ-PLPVSALQQPQYESLYKFS--HFNPIQTQIFHCLYHTDNNVLLGAPTGSGKT 728
+N LQ L SA QQ Y F FN +Q +F NVL+ PTG GKT
Sbjct: 48 SNRYRLQHELDESAAQQWVYPINVSFRDYQFNIVQKALFE-------NVLVALPTGLGKT 100
Query: 729 IAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDV--TPD 786
A + + P++ +V++AP K LV +++ + K K + EL+G V T
Sbjct: 101 FIAAVVMMNYLRWFPKSYIVFMAPTKPLVTQQM-EACYKITGIPKSQTAELSGHVPVTTR 159
Query: 787 IQAISSASVIVTTPEK-WDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRV 845
Q S +V TP+ + + +R ++ ++IDE H G V V V
Sbjct: 160 NQYYQSRNVFFVTPQTILNDIKHGICDRT---RISCLVIDEAH---RSTGNYAYVEV--V 211
Query: 846 NFISSYTKRNVRLVGLSTALAN 867
+ +S + +N R++ LS N
Sbjct: 212 HLLS-LSNKNFRILALSATPGN 232
>POMBASE|SPAC20H4.04 [details] [associations]
symbol:fml2 "ATP-dependent 3' to 5' DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=ISO]
[GO:0043138 "3'-5' DNA helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20H4.04
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG1111 GO:GO:0033567
RefSeq:NP_593624.1 ProteinModelPortal:Q9HE09
EnsemblFungi:SPAC20H4.04.1 GeneID:2542014 KEGG:spo:SPAC20H4.04
OMA:ILIVVER OrthoDB:EOG4HHSCC NextBio:20803094 Uniprot:Q9HE09
Length = 783
Score = 135 (52.6 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 43/167 (25%), Positives = 80/167 (47%)
Query: 665 PELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTG 724
P++ N +++ P + A+Q + ++ ++ + L+H N+LL PTG
Sbjct: 81 PQVITELENNIDI-PKNIDAMQNWIFPQTQQYRNYQKEFCE--QALFH---NLLLALPTG 134
Query: 725 SGKTIAAEITCFRVFKQCPEAKVVYIAPLKALV-KERVADWKVKFEARLKKKVVELTGDV 783
GKT A + F+ PE+K++++AP K L+ ++RVA V EL G+V
Sbjct: 135 LGKTFIAAVVMLNYFRWFPESKIIFLAPTKPLLLQQRVACSNVA--GMSPGATAELNGEV 192
Query: 784 TPDIQAI--SSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIH 828
+PD + ++ V TP+ + ++ +S+ +I DE H
Sbjct: 193 SPDRRLFEYNTKRVFFMTPQTLQNDLK--EHLLDAKSIICLIFDEAH 237
>FB|FBgn0001986 [details] [associations]
symbol:l(2)35Df "lethal (2) 35Df" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG4581 GeneTree:ENSGT00690000102230 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:AF145638
RefSeq:NP_524929.1 UniGene:Dm.1748 SMR:Q9Y134 MINT:MINT-942655
STRING:Q9Y134 EnsemblMetazoa:FBtr0080760 GeneID:48782
KEGG:dme:Dmel_CG4152 UCSC:CG4152-RA FlyBase:FBgn0001986
InParanoid:Q9Y134 OrthoDB:EOG4K3JB5 GenomeRNAi:48782 NextBio:839548
Uniprot:Q9Y134
Length = 1055
Score = 135 (52.6 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 57/202 (28%), Positives = 97/202 (48%)
Query: 641 IRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPL-PVSALQQPQYESLYKFSHF 699
+ A+ R + ++ S H + HP E PL P S + P E Y F
Sbjct: 104 LEALRTRIVTHLLDAPKSCTHEVAA--HPDQ----EYIPLKPFSGV--PAKE--YPFV-L 152
Query: 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQ-CPEAKVVYIAPLKALVK 758
+P Q Q C+ ++ + VL+ A T +GKT+ AE + + K + +V+Y P+KAL
Sbjct: 153 DPFQRQAILCIDNSQS-VLVSAHTSAGKTVVAE---YAIAKSLAAKQRVIYTTPIKALSN 208
Query: 759 ERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQS 818
++ ++ +F K V +TGDVT + SAS ++ T E + ++ ++
Sbjct: 209 QKFREFTDEF-----KDVGLVTGDVTIN----PSASCLIMTTEILRNML--YRGSEIMRE 257
Query: 819 VALIIIDEIHLLGE-DRGPVLE 839
V ++ DEIH + + +RG V E
Sbjct: 258 VGWVVFDEIHYMRDKERGVVWE 279
>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
symbol:PFF0100w "putative ATP dependent RNA
helicase" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
Length = 1350
Score = 136 (52.9 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 46/149 (30%), Positives = 77/149 (51%)
Query: 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753
YKF + Q + CL ++ VL+ A T +GKT+ AE + + +V+Y +P+
Sbjct: 251 YKFE-LDTFQKKSIECLERNES-VLVSAHTSAGKTVIAEYAIALGLRD--KQRVIYTSPI 306
Query: 754 KALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQ 811
KAL ++ D +F K V +TGD++ + +A S+IV T E + RS ++
Sbjct: 307 KALSNQKYRDLGEEF-----KDVGLITGDISINPEA----SIIVMTTE----ILRSMLYR 353
Query: 812 NRNYVQSVALIIIDEIHLLGE-DRGPVLE 839
+ + V +I DEIH + + DRG + E
Sbjct: 354 GSSLTKEVKWVIFDEIHYMRDRDRGVIWE 382
>UNIPROTKB|I3LAH4 [details] [associations]
symbol:I3LAH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00640000091272 EMBL:CU104757
Ensembl:ENSSSCT00000025204 OMA:FMKEGSA Uniprot:I3LAH4
Length = 197
Score = 121 (47.7 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 32/95 (33%), Positives = 50/95 (52%)
Query: 856 VRLVGLSTALANAKDLATWLNITKQ-GMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMN 914
+R++GLS L N D+AT+L++ G++ F RPVPL G ++ M+
Sbjct: 2 IRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVPLGQTFLGVKSANKVQQLNNMD 61
Query: 915 KPIYTAI-KQHSPEKPVMIFVSSRRQTRLTAIDLI 948
+ Y ++ KQ VM+FV +R T TA+ LI
Sbjct: 62 EVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLI 96
>TAIR|locus:2075566 [details] [associations]
symbol:AT3G46960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0005773
"vacuole" evidence=IDA] [GO:0006813 "potassium ion transport"
evidence=IMP] [GO:0035864 "response to potassium ion" evidence=IMP]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005773
EMBL:CP002686 GO:GO:0003676 GO:GO:0006813 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC IPI:IPI00544785
RefSeq:NP_190280.5 UniGene:At.28750 UniGene:At.48743
ProteinModelPortal:F4JAA5 SMR:F4JAA5 PRIDE:F4JAA5
EnsemblPlants:AT3G46960.1 GeneID:823849 KEGG:ath:AT3G46960
GO:GO:0035864 Uniprot:F4JAA5
Length = 1347
Score = 135 (52.6 bits), Expect = 0.00011, P = 0.00011
Identities = 43/147 (29%), Positives = 73/147 (49%)
Query: 709 CLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKF 768
C +V + A T +GKT+ AE K C A VY AP+K + ++ D+ KF
Sbjct: 370 CCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRA--VYTAPIKTISNQKYRDFCGKF 427
Query: 769 EARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQNRNYVQSVALIIIDE 826
+ L LTGDV+ I+ AS ++ T E + RS ++ + ++ + +I DE
Sbjct: 428 DVGL------LTGDVS--IRP--EASCLIMTTE----ILRSMLYRGADIIRDIEWVIFDE 473
Query: 827 IHLLGE-DRGPVLEVIV----SRVNFI 848
+H + + +RG V E ++ +NF+
Sbjct: 474 VHYVNDVERGVVWEEVIIMLPRHINFV 500
>UNIPROTKB|G4NH56 [details] [associations]
symbol:MGG_03931 "FRQ-interacting RNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0031499 GO:GO:0043629
GO:GO:0071035 GO:GO:0071038 EMBL:CM001236 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000467 GO:GO:0071042
GO:GO:0071051 GO:GO:0008143 GO:GO:0034459 GO:GO:0034475
GO:GO:0034476 KO:K12598 InterPro:IPR025696 Pfam:PF13234
GO:GO:0071049 RefSeq:XP_003719933.1 EnsemblFungi:MGG_03931T0
GeneID:2677161 KEGG:mgr:MGG_03931 Uniprot:G4NH56
Length = 1102
Score = 143 (55.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 53/191 (27%), Positives = 91/191 (47%)
Query: 652 VVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLY 711
V+ H++ + + P+L + L E +P P ++P + +K F I
Sbjct: 138 VLSHNIQHQVALPPDLDYVYVPLSEHKP-P----EEPARKYAFKLDPFQSISVASIE--- 189
Query: 712 HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771
D +VL+ A T +GKT+ AE K+ +V+Y +P+KAL ++ D++ +F
Sbjct: 190 -RDESVLVSAHTSAGKTVVAEYAIAHCLKR--NQRVIYTSPIKALSNQKFRDFQAEFG-- 244
Query: 772 LKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQNRNYVQSVALIIIDEIHL 829
V +TGDVT + +AS +V T E + RS ++ + V ++ DEIH
Sbjct: 245 ---DVGLMTGDVTIN----PTASCLVMTTE----ILRSMLYRGSEITREVGWVVFDEIHY 293
Query: 830 LGE-DRGPVLE 839
+ + RG V E
Sbjct: 294 MRDATRGVVWE 304
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 15/81 (18%), Positives = 35/81 (43%)
Query: 14 DEVHLLHGDRGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPT 73
++V + +G + +A + Q++ K K ++ DT + T ++ + A
Sbjct: 70 EDVEMANGTQPSTGDAGSEESSSDEHQDI-KRRKKEGEADPILTDT-FETAQSRQVAAAE 127
Query: 74 GAGKTNVAMLTIAHQIKQHIS 94
G G L ++H I+ ++
Sbjct: 128 GFGTKEEDSLVLSHNIQHQVA 148
>ZFIN|ZDB-GENE-040426-2854 [details] [associations]
symbol:skiv2l2 "superkiller viralicidic activity
2-like 2" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0031101 "fin regeneration"
evidence=IMP] [GO:0051781 "positive regulation of cell division"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2854 GO:GO:0005524 GO:GO:0051781 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031101
GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 CTD:23517 HOVERGEN:HBG104255
OrthoDB:EOG4D52WW EMBL:BC061456 IPI:IPI00481753 RefSeq:NP_999933.1
UniGene:Dr.75715 ProteinModelPortal:Q6P7X6 STRING:Q6P7X6
PRIDE:Q6P7X6 GeneID:406795 KEGG:dre:406795 NextBio:20818305
Bgee:Q6P7X6 Uniprot:Q6P7X6
Length = 1034
Score = 133 (51.9 bits), Expect = 0.00013, P = 0.00013
Identities = 47/151 (31%), Positives = 79/151 (52%)
Query: 694 YKFSHFNPIQTQIFHCLYHTDNN--VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751
Y F +P Q + C+ DNN VL+ A T +GKT+ AE ++ + +V++ +
Sbjct: 124 YPFI-LDPFQREAILCI---DNNQSVLVSAHTSAGKTVCAEYAIALALRE--KQRVIFTS 177
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS-- 809
P+KAL ++ + +F+ V +TGDVT + +AS +V T E + RS
Sbjct: 178 PIKALSNQKYREMYEEFQ-----DVGLMTGDVTIN----PTASCLVMTTE----ILRSML 224
Query: 810 WQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839
++ ++ VA +I DEIH + + +RG V E
Sbjct: 225 YRGSEVMREVAWVIFDEIHYMRDSERGVVWE 255
>TAIR|locus:2063648 [details] [associations]
symbol:HEN2 "hua enhancer 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0010093
"specification of floral organ identity" evidence=IMP] [GO:0016070
"RNA metabolic process" evidence=TAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0003002 "regionalization" evidence=RCA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0003676 GO:GO:0010093
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC005171 GO:GO:0003724 HOGENOM:HOG000163047
KO:K12598 InterPro:IPR025696 Pfam:PF13234 EMBL:BT005794
IPI:IPI00539432 PIR:B84481 RefSeq:NP_565338.1 UniGene:At.20667
ProteinModelPortal:Q9ZVW2 SMR:Q9ZVW2 IntAct:Q9ZVW2 PRIDE:Q9ZVW2
EnsemblPlants:AT2G06990.1 GeneID:815269 KEGG:ath:AT2G06990
TAIR:At2g06990 InParanoid:Q9ZVW2 OMA:TFDRVCD PhylomeDB:Q9ZVW2
ProtClustDB:CLSN2688028 ArrayExpress:Q9ZVW2 Genevestigator:Q9ZVW2
Uniprot:Q9ZVW2
Length = 995
Score = 141 (54.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 58/203 (28%), Positives = 96/203 (47%)
Query: 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753
Y F +P Q+ CL ++ +L+ A T +GKT AE F+ + +V+Y +PL
Sbjct: 78 YPFK-LDPFQSVSVACLERKES-ILVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 133
Query: 754 KALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNR 813
KAL ++ + + +F K V +TGDVT +AS +V T E + ++
Sbjct: 134 KALSNQKYRELQHEF-----KDVGLMTGDVTLS----PNASCLVMTTEILRAML--YRGS 182
Query: 814 NYVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLA 872
++ VA +I DEIH + + +RG V E + F+ K +S A A+ +
Sbjct: 183 EVLKEVAWVIFDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMSNATEFAEWIC 239
Query: 873 TWLNITKQGMYNFRPSVRPVPLE 895
+L+ KQ + RP PL+
Sbjct: 240 -YLH--KQPCHVVYTDFRPTPLQ 259
Score = 42 (19.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 917 IYTAIKQHSPEK--PVMIFVSSRRQTRLTAIDL 947
+Y +K K PV+IF SRR+ A+ +
Sbjct: 324 VYKIVKMIMERKFEPVIIFSFSRRECEQHALSM 356
>UNIPROTKB|G3MYJ7 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 EMBL:DAAA02050346 EMBL:DAAA02050343
EMBL:DAAA02050344 EMBL:DAAA02050345 Ensembl:ENSBTAT00000064767
Uniprot:G3MYJ7
Length = 605
Score = 127 (49.8 bits), Expect = 0.00028, P = 0.00028
Identities = 46/151 (30%), Positives = 78/151 (51%)
Query: 694 YKFSHFNPIQTQIFHCLYHTDNN--VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751
Y F + Q + C+ DNN VL+ A T +GKT+ AE ++ + +V++ +
Sbjct: 134 YPFI-LDAFQREAIQCV---DNNQSVLVSAHTSAGKTVCAEYAIALALRE--KQRVIFTS 187
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS-- 809
P+KAL ++ + +F+ V +TGDVT + +AS +V T E + RS
Sbjct: 188 PIKALSNQKYREMYEEFQ-----DVGLMTGDVTIN----PTASCLVMTTE----ILRSML 234
Query: 810 WQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839
++ ++ VA +I DEIH + + +RG V E
Sbjct: 235 YRGSEVMREVAWVIFDEIHYMRDSERGVVWE 265
>POMBASE|SPAC6F12.16c [details] [associations]
symbol:mtr4 "ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0016078 "tRNA catabolic process" evidence=ISO]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA
polyadenylation involved in polyadenylation-dependent ncRNA
catabolic process" evidence=ISO] [GO:0071049 "nuclear retention of
pre-mRNA with aberrant 3'-ends at the site of transcription"
evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC6F12.16c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
GO:GO:0003676 GO:GO:0031499 GO:GO:0043630 GO:GO:0016078
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696
Pfam:PF13234 EMBL:AB027847 PIR:T11667 RefSeq:NP_593302.1
ProteinModelPortal:O14232 STRING:O14232 EnsemblFungi:SPAC6F12.16c.1
GeneID:2541639 KEGG:spo:SPAC6F12.16c OMA:DDRISAD OrthoDB:EOG4S1XG7
NextBio:20802732 GO:GO:0071049 Uniprot:O14232
Length = 1117
Score = 130 (50.8 bits), Expect = 0.00029, P = 0.00029
Identities = 49/166 (29%), Positives = 84/166 (50%)
Query: 680 LPVSALQQPQYES-LYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRV 738
+P+S + P + Y F+ +P Q C+ ++ VL+ A T +GKT+ AE +
Sbjct: 180 VPISKHKSPIPPARTYPFT-LDPFQAVSIACIERQES-VLVSAHTSAGKTVVAEYAVAQS 237
Query: 739 FKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVT--PDIQAISSASVI 796
+ + +V+Y +P+KAL ++ + +F V +TGDVT PD A+ +
Sbjct: 238 LRD--KQRVIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDVTINPD------ATCL 284
Query: 797 VTTPEKWDGVSRS--WQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839
V T E + RS ++ ++ VA +I DEIH + + +RG V E
Sbjct: 285 VMTTE----ILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWE 326
>UNIPROTKB|P30015 [details] [associations]
symbol:lhr "member of ATP-dependent helicase superfamily
II" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 InterPro:IPR013701
Pfam:PF00270 Pfam:PF00271 Pfam:PF08494 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:L01622 PIR:G64922 RefSeq:NP_416170.1 RefSeq:YP_489917.1
ProteinModelPortal:P30015 SMR:P30015 DIP:DIP-10097N IntAct:P30015
MINT:MINT-1293547 PaxDb:P30015 PRIDE:P30015
EnsemblBacteria:EBESCT00000003531 EnsemblBacteria:EBESCT00000018334
GeneID:12931274 GeneID:946156 KEGG:ecj:Y75_p1630 KEGG:eco:b1653
PATRIC:32118608 EchoBASE:EB1510 EcoGene:EG11548 eggNOG:COG1201
HOGENOM:HOG000238716 KO:K03724 OMA:PRLVWDR ProtClustDB:PRK09751
BioCyc:EcoCyc:EG11548-MONOMER BioCyc:ECOL316407:JW1645-MONOMER
Genevestigator:P30015 Uniprot:P30015
Length = 1538
Score = 100 (40.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 41/147 (27%), Positives = 78/147 (53%)
Query: 745 AKVVYIAPLKAL---VKER-------VADWKVKF-EARLKKKVVELTGDVTPDIQAI--- 790
++++YI+P+KAL V+ +AD + + E + +V TGD TP +
Sbjct: 86 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGD-TPAQERSKLT 144
Query: 791 -SSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL-GEDRGPVLEVIVSRVNFI 848
+ +++TTPE + S + R ++ V +IIDE+H + G RG L + + R++ +
Sbjct: 145 RNPPDILITTPESLYLMLTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL 203
Query: 849 SSYTKRNVRLVGLSTALANAKDLATWL 875
+T + + +GLS + +A D+A +L
Sbjct: 204 L-HT--SAQRIGLSATVRSASDVAAFL 227
Score = 85 (35.0 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 693 LYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCF-RVFKQCPE------- 744
L F +Q Q +H +++ +++ APTGSGKT+AA + R+F++ E
Sbjct: 24 LRAFKQPTAVQPQTWHVAARSEHALVI-APTGSGKTLAAFLYALDRLFREGGEDTREAHK 82
Query: 745 ---AKVVYIAPLKAL 756
++++YI+P+KAL
Sbjct: 83 RKTSRILYISPIKAL 97
>SGD|S000003586 [details] [associations]
symbol:MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H
family" species:4932 "Saccharomyces cerevisiae" [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0043629
"ncRNA polyadenylation" evidence=IDA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IGI;IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031499 "TRAMP complex" evidence=IDA;IPI] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034459 "ATP-dependent 3'-5' RNA
helicase activity" evidence=IMP;IDA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IGI] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011254 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
SGD:S000003586 GO:GO:0005524 GO:GO:0005730 EMBL:BK006943
GO:GO:0016491 GO:GO:0031499 GO:GO:0043629 GO:GO:0071035
GO:GO:0071038 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
SUPFAM:SSF56821 GO:GO:0000467 GO:GO:0071042 GO:GO:0071051
GO:GO:0008143 GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475
GO:GO:0034476 GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 EMBL:Z49325 PIR:S56822
RefSeq:NP_012485.1 PDB:2XGJ PDB:3L9O PDBsum:2XGJ PDBsum:3L9O
ProteinModelPortal:P47047 SMR:P47047 DIP:DIP-6394N IntAct:P47047
MINT:MINT-620894 STRING:P47047 PaxDb:P47047 PeptideAtlas:P47047
EnsemblFungi:YJL050W GeneID:853397 KEGG:sce:YJL050W CYGD:YJL050w
EvolutionaryTrace:P47047 NextBio:973882 Genevestigator:P47047
GermOnline:YJL050W Uniprot:P47047
Length = 1073
Score = 129 (50.5 bits), Expect = 0.00036, P = 0.00036
Identities = 46/164 (28%), Positives = 81/164 (49%)
Query: 681 PVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFK 740
P++ ++ Y F+ +P Q C+ ++ VL+ A T +GKT+ AE + K
Sbjct: 133 PIAEHKRVNEARTYPFT-LDPFQDTAISCIDRGES-VLVSAHTSAGKTVVAEYAIAQSLK 190
Query: 741 QCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVT--PDIQAISSASVIVT 798
+ +V+Y +P+KAL ++ + +F V +TGD+T PD A +V
Sbjct: 191 N--KQRVIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITINPD------AGCLVM 237
Query: 799 TPEKWDGVSRS--WQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839
T E + RS ++ ++ VA +I DE+H + + +RG V E
Sbjct: 238 TTE----ILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWE 277
>TIGR_CMR|SPO_3098 [details] [associations]
symbol:SPO_3098 "ATP-dependent helicase, DEAD/DEAH box
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR013701
InterPro:IPR017170 Pfam:PF00270 Pfam:PF00271 Pfam:PF08494
PIRSF:PIRSF037307 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03724 RefSeq:YP_168301.1 ProteinModelPortal:Q5LNV5
GeneID:3195597 KEGG:sil:SPO3098 PATRIC:23379641
HOGENOM:HOG000036041 OMA:SYEDAPR ProtClustDB:CLSK2308438
InterPro:IPR026362 TIGRFAMs:TIGR04121 Uniprot:Q5LNV5
Length = 802
Score = 127 (49.8 bits), Expect = 0.00041, P = 0.00041
Identities = 46/166 (27%), Positives = 84/166 (50%)
Query: 718 LLGAPTGSGKTIAAEI-TCFRVFK-QCPEAKVVYIAPLKALVKERVADWKVKF-EARLKK 774
LL APTG GKT+A + T + + Q +Y++PLKAL + + + E L
Sbjct: 36 LLIAPTGGGKTMAGFLPTLAELAEGQHQGLHTLYVSPLKALAADIKRNLRTPVDEIGLAV 95
Query: 775 KVVELTGDVTPDIQAISSAS---VIVTTPEKWDGVSRSWQNR-NYVQSVALIIIDEIHLL 830
++ + TGD + + A +++TTPE + S+++ + +++DEIH L
Sbjct: 96 RIEDRTGDTSATQKKRQRADPPHILLTTPESL-ALLTSYEDAPRMFAGLRRVVVDEIHAL 154
Query: 831 GED-RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWL 875
E RG L + ++R+ + ++R VGLS + + + +A +L
Sbjct: 155 AESKRGDQLMLALARLQTLCP----DLRRVGLSATVEDPQAIARFL 196
>UNIPROTKB|F1MJX4 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:DAAA02050346 EMBL:DAAA02050343 EMBL:DAAA02050344
EMBL:DAAA02050345 IPI:IPI00839454 Ensembl:ENSBTAT00000047363
Uniprot:F1MJX4
Length = 937
Score = 127 (49.8 bits), Expect = 0.00050, P = 0.00050
Identities = 46/151 (30%), Positives = 78/151 (51%)
Query: 694 YKFSHFNPIQTQIFHCLYHTDNN--VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751
Y F + Q + C+ DNN VL+ A T +GKT+ AE ++ + +V++ +
Sbjct: 134 YPFI-LDAFQREAIQCV---DNNQSVLVSAHTSAGKTVCAEYAIALALRE--KQRVIFTS 187
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS-- 809
P+KAL ++ + +F+ V +TGDVT + +AS +V T E + RS
Sbjct: 188 PIKALSNQKYREMYEEFQ-----DVGLMTGDVTIN----PTASCLVMTTE----ILRSML 234
Query: 810 WQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839
++ ++ VA +I DEIH + + +RG V E
Sbjct: 235 YRGSEVMREVAWVIFDEIHYMRDSERGVVWE 265
>UNIPROTKB|F5H7E2 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:18734 ChiTaRS:SKIV2L2 EMBL:AC010480
EMBL:AC020728 IPI:IPI01011073 ProteinModelPortal:F5H7E2 SMR:F5H7E2
Ensembl:ENST00000545714 UCSC:uc011cqi.2 ArrayExpress:F5H7E2
Bgee:F5H7E2 Uniprot:F5H7E2
Length = 941
Score = 127 (49.8 bits), Expect = 0.00050, P = 0.00050
Identities = 46/151 (30%), Positives = 78/151 (51%)
Query: 694 YKFSHFNPIQTQIFHCLYHTDNN--VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751
Y F + Q + C+ DNN VL+ A T +GKT+ AE ++ + +V++ +
Sbjct: 35 YPFI-LDAFQREAIQCV---DNNQSVLVSAHTSAGKTVCAEYAIALALRE--KQRVIFTS 88
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS-- 809
P+KAL ++ + +F+ V +TGDVT + +AS +V T E + RS
Sbjct: 89 PIKALSNQKYREMYEEFQ-----DVGLMTGDVTIN----PTASCLVMTTE----ILRSML 135
Query: 810 WQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839
++ ++ VA +I DEIH + + +RG V E
Sbjct: 136 YRGSEVMREVAWVIFDEIHYMRDSERGVVWE 166
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 123 (48.4 bits), Expect = 0.00056, P = 0.00056
Identities = 76/286 (26%), Positives = 119/286 (41%)
Query: 665 PELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTG 724
P L P ++ LP S + Y L F+ IQ+ + L+ +V+ A TG
Sbjct: 68 PSLRP----IISFSFLPPS--NKDLYAPLDGFASPTAIQSATWPLLF-AGRDVIGIAETG 120
Query: 725 SGKTIAAEITCFRVF-------KQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVV 777
SGKT+A + C + K C VV I+P + L + + D VKF ++ +V
Sbjct: 121 SGKTLAFGLPCLKKVLDLKTKQKSCRPLAVV-ISPTRELAMQ-IYDQLVKFAEKVDIQVA 178
Query: 778 ELTGDVTPDIQ--AISSASVIVTTPEKWDGVSRSWQNRNYVQ--SVALIIIDEIHLLGED 833
+ G V D Q A+ SA+V+V TP G + QN + V +++DE + D
Sbjct: 179 CIFGGVKKDEQREALKSAAVVVATP----GRLKDLQNDGSLDLGRVKYLVLDEADRM-LD 233
Query: 834 RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVP 893
+G E + + +KR T + A TW I + F S P
Sbjct: 234 KG--FEQDIKDIISPMPVSKRQ-------TVMFTA----TWPPIVRNLASTFMTS----P 276
Query: 894 LEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQ 939
+ V I G P PR K + +K H E+ ++ + +R Q
Sbjct: 277 VTVTIGGDPSAD--PRANSRIKQVVEVVKPHEKEQR-LVQILNRHQ 319
>MGI|MGI:1919448 [details] [associations]
symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000460 "maturation of 5.8S
rRNA" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919448 GO:GO:0005524
GO:GO:0005730 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 CTD:23517
HOVERGEN:HBG104255 OrthoDB:EOG4D52WW ChiTaRS:SKIV2L2 EMBL:AK012158
EMBL:BC029230 IPI:IPI00113134 RefSeq:NP_082427.1 UniGene:Mm.291029
ProteinModelPortal:Q9CZU3 SMR:Q9CZU3 IntAct:Q9CZU3 STRING:Q9CZU3
PhosphoSite:Q9CZU3 PaxDb:Q9CZU3 PRIDE:Q9CZU3
Ensembl:ENSMUST00000022281 GeneID:72198 KEGG:mmu:72198
UCSC:uc007rws.1 InParanoid:Q9CZU3 NextBio:335677 Bgee:Q9CZU3
Genevestigator:Q9CZU3 GermOnline:ENSMUSG00000016018 Uniprot:Q9CZU3
Length = 1040
Score = 127 (49.8 bits), Expect = 0.00056, P = 0.00056
Identities = 46/151 (30%), Positives = 78/151 (51%)
Query: 694 YKFSHFNPIQTQIFHCLYHTDNN--VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751
Y F + Q + C+ DNN VL+ A T +GKT+ AE ++ + +V++ +
Sbjct: 134 YPFI-LDAFQREAIQCV---DNNQSVLVSAHTSAGKTVCAEYAIALALRE--KQRVIFTS 187
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS-- 809
P+KAL ++ + +F+ V +TGDVT + +AS +V T E + RS
Sbjct: 188 PIKALSNQKYREMYEEFQ-----DVGLMTGDVTIN----PTASCLVMTTE----ILRSML 234
Query: 810 WQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839
++ ++ VA +I DEIH + + +RG V E
Sbjct: 235 YRGSEVMREVAWVIFDEIHYMRDSERGVVWE 265
>UNIPROTKB|E2RCI5 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 CTD:23517 EMBL:AAEX03001437
RefSeq:XP_849676.1 Ensembl:ENSCAFT00000010985 GeneID:607950
KEGG:cfa:607950 Uniprot:E2RCI5
Length = 1042
Score = 127 (49.8 bits), Expect = 0.00056, P = 0.00056
Identities = 46/151 (30%), Positives = 78/151 (51%)
Query: 694 YKFSHFNPIQTQIFHCLYHTDNN--VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751
Y F + Q + C+ DNN VL+ A T +GKT+ AE ++ + +V++ +
Sbjct: 136 YPFI-LDAFQREAIQCV---DNNQSVLVSAHTSAGKTVCAEYAIALALRE--KQRVIFTS 189
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS-- 809
P+KAL ++ + +F+ V +TGDVT + +AS +V T E + RS
Sbjct: 190 PIKALSNQKYREMYEEFQ-----DVGLMTGDVTIN----PTASCLVMTTE----ILRSML 236
Query: 810 WQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839
++ ++ VA +I DEIH + + +RG V E
Sbjct: 237 YRGSEVMREVAWVIFDEIHYMRDSERGVVWE 267
>UNIPROTKB|P42285 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:D29641
EMBL:BX640789 EMBL:BC014669 EMBL:BC028604 EMBL:BC031779
EMBL:BC065258 EMBL:BC104996 EMBL:BC113509 IPI:IPI00647217
RefSeq:NP_056175.3 UniGene:Hs.274531 ProteinModelPortal:P42285
SMR:P42285 IntAct:P42285 STRING:P42285 PhosphoSite:P42285
DMDM:71153172 SWISS-2DPAGE:P42285 PaxDb:P42285 PeptideAtlas:P42285
PRIDE:P42285 DNASU:23517 Ensembl:ENST00000230640 GeneID:23517
KEGG:hsa:23517 UCSC:uc003jpy.4 CTD:23517 GeneCards:GC05P054605
HGNC:HGNC:18734 HPA:HPA037379 neXtProt:NX_P42285
PharmGKB:PA134901921 HOVERGEN:HBG104255 InParanoid:P42285
OrthoDB:EOG4D52WW PhylomeDB:P42285 ChiTaRS:SKIV2L2 GenomeRNAi:23517
NextBio:45957 ArrayExpress:P42285 Bgee:P42285 CleanEx:HS_SKIV2L2
Genevestigator:P42285 GermOnline:ENSG00000039123 Uniprot:P42285
Length = 1042
Score = 127 (49.8 bits), Expect = 0.00056, P = 0.00056
Identities = 46/151 (30%), Positives = 78/151 (51%)
Query: 694 YKFSHFNPIQTQIFHCLYHTDNN--VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751
Y F + Q + C+ DNN VL+ A T +GKT+ AE ++ + +V++ +
Sbjct: 136 YPFI-LDAFQREAIQCV---DNNQSVLVSAHTSAGKTVCAEYAIALALRE--KQRVIFTS 189
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS-- 809
P+KAL ++ + +F+ V +TGDVT + +AS +V T E + RS
Sbjct: 190 PIKALSNQKYREMYEEFQ-----DVGLMTGDVTIN----PTASCLVMTTE----ILRSML 236
Query: 810 WQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839
++ ++ VA +I DEIH + + +RG V E
Sbjct: 237 YRGSEVMREVAWVIFDEIHYMRDSERGVVWE 267
>UNIPROTKB|F1SLL6 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:FP236391 EMBL:CU929534 Ensembl:ENSSSCT00000018417
Uniprot:F1SLL6
Length = 1046
Score = 127 (49.8 bits), Expect = 0.00057, P = 0.00057
Identities = 46/151 (30%), Positives = 78/151 (51%)
Query: 694 YKFSHFNPIQTQIFHCLYHTDNN--VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA 751
Y F + Q + C+ DNN VL+ A T +GKT+ AE ++ + +V++ +
Sbjct: 137 YPFI-LDAFQREAIQCV---DNNQSVLVSAHTSAGKTVCAEYAIALALRE--KQRVIFTS 190
Query: 752 PLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS-- 809
P+KAL ++ + +F+ V +TGDVT + +AS +V T E + RS
Sbjct: 191 PIKALSNQKYREMYEEFQ-----DVGLMTGDVTIN----PTASCLVMTTE----ILRSML 237
Query: 810 WQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839
++ ++ VA +I DEIH + + +RG V E
Sbjct: 238 YRGSEVMREVAWVIFDEIHYMRDSERGVVWE 268
>ASPGD|ASPL0000070749 [details] [associations]
symbol:mtr4 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0031499 "TRAMP
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001303
GO:GO:0031499 GO:GO:0043629 GO:GO:0071035 GO:GO:0071038
EMBL:AACD01000076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000467 GO:GO:0071042 GO:GO:0071051 GO:GO:0008143
GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475 GO:GO:0034476
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 OrthoDB:EOG4S1XG7 GO:GO:0071049 RefSeq:XP_662016.1
ProteinModelPortal:Q5B4W8 STRING:Q5B4W8
EnsemblFungi:CADANIAT00006045 GeneID:2872204 KEGG:ani:AN4412.2
Uniprot:Q5B4W8
Length = 1073
Score = 127 (49.8 bits), Expect = 0.00058, P = 0.00058
Identities = 46/164 (28%), Positives = 84/164 (51%)
Query: 680 LPVSALQQPQYES-LYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRV 738
+P+S + P+ + ++ F+ +P Q Q+ +VL+ A T +GKT+ AE +
Sbjct: 134 VPISQHKPPENPARVWPFT-LDPFQ-QVAVSSIQRGESVLVSAHTSAGKTVVAEYAIAQS 191
Query: 739 FKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVT 798
K +V+Y +P+KAL ++ ++ +F V +TGDVT + +A+ +V
Sbjct: 192 LKN--NQRVIYTSPIKALSNQKYREFAAEFG-----DVGLMTGDVTIN----PTATCLVM 240
Query: 799 TPEKWDGVSRS--WQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839
T E + RS ++ ++ VA ++ DEIH + + RG V E
Sbjct: 241 TTE----ILRSMLYRGSEIMREVAWVVFDEIHYMRDATRGVVWE 280
>CGD|CAL0003794 [details] [associations]
symbol:orf19.1335 species:5476 "Candida albicans" [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0034459 "ATP-dependent
3'-5' RNA helicase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA] [GO:0034476
"U5 snRNA 3'-end processing" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0000467 "exonucleolytic trimming
to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003794 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581
EMBL:AACQ01000188 EMBL:AACQ01000187 KO:K12598 InterPro:IPR025696
Pfam:PF13234 RefSeq:XP_711657.1 RefSeq:XP_711675.1
RefSeq:XP_888948.1 STRING:Q59PN6 GeneID:3646717 GeneID:3646739
GeneID:3703907 KEGG:cal:CaO19.1335 KEGG:cal:CaO19.8915
KEGG:cal:CaO19_1335 Uniprot:Q59PN6
Length = 1106
Score = 126 (49.4 bits), Expect = 0.00078, P = 0.00078
Identities = 45/165 (27%), Positives = 80/165 (48%)
Query: 680 LPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVF 739
+P+ ++ Y F+ +P Q C+ ++ VL+ A T +GKT+ AE +
Sbjct: 167 VPIGEHKRKHEARTYPFT-LDPFQDTAISCIDRNES-VLVSAHTSAGKTVVAEYAIAQSL 224
Query: 740 KQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVT--PDIQAISSASVIV 797
+ + +V+Y +P+KAL ++ + + F V +TGDVT PD A +V
Sbjct: 225 RD--KQRVIYTSPIKALSNQKFRELQAIFG-----DVGLMTGDVTINPD------AGCLV 271
Query: 798 TTPEKWDGVSRS--WQNRNYVQSVALIIIDEIHLLGE-DRGPVLE 839
T E + RS ++ ++ VA ++ DE+H + + RG V E
Sbjct: 272 MTTE----ILRSMLYRGSEVMREVAWVVFDEVHYMRDKSRGVVWE 312
>UNIPROTKB|F6QFS2 [details] [associations]
symbol:F6QFS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GeneTree:ENSGT00640000091530
EMBL:DAAA02052960 EMBL:DAAA02052959 IPI:IPI00843333
Ensembl:ENSBTAT00000043352 OMA:SHERQLE Uniprot:F6QFS2
Length = 373
Score = 119 (46.9 bits), Expect = 0.00098, P = 0.00098
Identities = 41/155 (26%), Positives = 75/155 (48%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERV-ADWKVKFEARLKK 774
N L+ PTG GKT A + + ++ P KVV++AP K LV +++ A ++V +
Sbjct: 112 NTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYRVM--GIPQS 169
Query: 775 KVVELTGDVTPDI--QAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIH-LLG 831
+ E+TG + SS V+ TP+ V+ + + ++IDE H LG
Sbjct: 170 HMAEMTGSTQAFTRKEIWSSKRVLFLTPQVM--VNDLSRGACPAAEIKCLVIDEAHKALG 227
Query: 832 EDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALA 866
+VI+ ++ + ++ N+R+ +S+ A
Sbjct: 228 NYA--YCQVILLKIFYSQNFRLLNLRIPPVSSIKA 260
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1034 1015 0.00080 123 3 11 22 0.38 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 127
No. of states in DFA: 631 (67 KB)
Total size of DFA: 477 KB (2222 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 86.84u 0.10s 86.94t Elapsed: 00:00:57
Total cpu time: 86.93u 0.10s 87.03t Elapsed: 00:00:57
Start: Thu Aug 15 11:27:18 2013 End: Thu Aug 15 11:28:15 2013
WARNINGS ISSUED: 1