RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13788
(1034 letters)
>gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain. This domain (also known as the
Brl domain) is required for assembly of functional
endoplasmic reticulum translocons.
Length = 309
Score = 292 bits (751), Expect = 4e-91
Identities = 123/324 (37%), Positives = 188/324 (58%), Gaps = 21/324 (6%)
Query: 341 TDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLT 400
T+LGR AS+YYI + +E F + +L ++S A EFE++ VR+EE EL L
Sbjct: 2 TELGRIASHYYILYETMETFNTSLKPNTTLKDLLEILSSASEFEEIPVREEEKKELKKL- 60
Query: 401 QECCEIPIRGGS-ENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEIT 459
E IP++ S ++ H KVN+LLQ LSR ++ FSLVSDL Y+ QN R++RALFEI
Sbjct: 61 LERVPIPVKSPSIDDPHAKVNLLLQAYLSRLKLPDFSLVSDLNYILQNAGRLLRALFEIA 120
Query: 460 LHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIEQRG-L 518
L + A L+ + M E + WP ++PLRQ+ + P++L K+E++G
Sbjct: 121 LSKGWLSPALNALELSKMIEQRLWPSDSPLRQLPHIP----------PEVLKKLEKKGIS 170
Query: 519 TVEDLREMPAKEISYMLR-DPHVGDKVKQCAWEIPLLEIESKLLPITRTV-LKIHLTIKA 576
++EDL ++ +E+ +L +P G + + P LEIE+++ PITR V L++ +T+
Sbjct: 171 SLEDLMDLDPEELGELLGNNPKQGKDIAEFVNRFPRLEIEAEVQPITREVSLRVEVTLTR 230
Query: 577 NFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLS-DPL 635
+F W+++ +E FWI VED D++ + E F L+KK K E L T+PLS PL
Sbjct: 231 DFEWDER-FHGKSEGFWIVVEDSDNNELLAIERFTLNKK----KDEHELEFTVPLSGGPL 285
Query: 636 PNQYLIRAMSDRYLGSVVQHSMSF 659
P Q IR +SD +LG + +S
Sbjct: 286 PPQLTIRLVSDSWLGCDQEVPVSL 309
Score = 38.0 bits (89), Expect = 0.018
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 13/52 (25%)
Query: 131 DLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIFGRA 182
+LGR AS+YYI + +E F + T + D+L+I A
Sbjct: 3 ELGRIASHYYILYETMETFNTSLKPNTTL-------------KDLLEILSSA 41
>gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and
other proteins.
Length = 312
Score = 269 bits (689), Expect = 3e-82
Identities = 109/326 (33%), Positives = 171/326 (52%), Gaps = 16/326 (4%)
Query: 337 DLAITDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHEL 396
+ TDLGR AS YYI + I F E + + +L ++S + EF+Q+ VR EE L
Sbjct: 1 GIWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLL 60
Query: 397 DNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALF 456
+ L ++ ++ H K N+LLQ LSR ++ SF+L SD YV QN R+++A+
Sbjct: 61 EELAEKLPIRLENPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMV 120
Query: 457 EITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDILNKIE-Q 515
+I L R A L + M WP ++PL Q+ P L +IL ++E +
Sbjct: 121 DIALERGWLSTALNALNLSQMIIQALWPTDSPLLQL----------PHLPEEILKRLEKK 170
Query: 516 RGLTVEDLREMPAKEISYMLRDP-HVGDKVKQCAWEIPLLEIESKLLPITRTVLKIHLTI 574
+ L++EDL E+ +E +L G++V + +P L IE L PITRTVL + +T+
Sbjct: 171 KVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTL 230
Query: 575 KANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDP 634
+ +W+D+ E +W+ + D D + + H E F L+KK V E L T P ++
Sbjct: 231 TVDLTWDDEIHGK-QEGWWLVIGDSDGNELLHIERFSLNKKNVS--EEVKLDFTAPATEG 287
Query: 635 LPNQYLIRAMSDRYLGSVVQHSMSFK 660
QY +R +SD YLG ++ +SF
Sbjct: 288 NY-QYTLRLVSDSYLGCDQEYPLSFD 312
Score = 40.7 bits (96), Expect = 0.003
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 127 YNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDVL 176
+DLGR AS YYI + I F E + +L +L
Sbjct: 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTT----------KDLLRIL 41
>gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain. This domain was named after
the yeast Sec63 (or NPL1) (also known as the Brl domain)
protein in which it was found. This protein is required
for assembly of functional endoplasmic reticulum
translocons. Other yeast proteins containing this domain
include pre-mRNA splicing helicase BRR2, HFM1 protein
and putative helicases.
Length = 314
Score = 265 bits (679), Expect = 9e-81
Identities = 108/325 (33%), Positives = 169/325 (52%), Gaps = 18/325 (5%)
Query: 341 TDLGRTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQAHEFEQLKVRDEELHELDNLT 400
T+LGR AS YYI + IE F + + IL ++S+A EF+++ VR E EL+ L
Sbjct: 2 TELGRIASYYYISYETIETFNQSLKPTTTLKDILEILSRASEFKEIPVRHNEKKELNEL- 60
Query: 401 QECCEIPIRGGSEN-VHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVIRIIRALFEIT 459
+ IP++ G + H KVN+LLQ LSR + F LVSDL+Y+ QN RI+RAL +I
Sbjct: 61 NKRVPIPVKEGIIDSPHAKVNLLLQAHLSRLPLPDFDLVSDLKYILQNAPRILRALVDIA 120
Query: 460 LHRNNAIMAARFLKFALMFETKQWPH-ETPLRQIKLVTNRGYQSPILKPDILNKIEQRGL 518
L + A L + M + W ++PL+Q+ L D+ +K+E +
Sbjct: 121 LSKGWLRTALNALDLSQMVVQRLWEDSDSPLKQLP---------HFLIEDVYDKLELKDG 171
Query: 519 --TVEDLREMPAKEISYMLRDPH-VGDKVKQCAWEIPLLEIESKLLPITRTV-LKIHLTI 574
+ E L +M A E+ L G + + P +E+E+++LPITR + L++ L I
Sbjct: 172 SRSFELLLDMNAAELGEFLNRLPPNGRLIYELLRRFPKIEVEAEVLPITRDLTLRVELEI 231
Query: 575 KANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDP 634
F+W+ +E +W+ V D D++ + + L KK+ +E L T+PLS+P
Sbjct: 232 TPVFAWDLPRHKGKSESWWLVVGDSDTNELLAIKRVTLRKKKK--SNEVKLDFTVPLSEP 289
Query: 635 LPNQYLIRAMSDRYLGSVVQHSMSF 659
P Y + +SD YLG + S S
Sbjct: 290 GPENYTVYLISDSYLGCDQEVSFSL 314
Score = 34.3 bits (79), Expect = 0.30
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 13/52 (25%)
Query: 131 DLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIFGRA 182
+LGR AS YYI + IE F + + T + D+L+I RA
Sbjct: 3 ELGRIASYYYISYETIETFNQSLKPTTTLK-------------DILEILSRA 41
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function
prediction only].
Length = 766
Score = 194 bits (496), Expect = 1e-51
Identities = 102/302 (33%), Positives = 153/302 (50%), Gaps = 17/302 (5%)
Query: 699 FNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758
FNP Q + L +D NVL+ APTGSGKT+ A + + KVVYI PLKAL +
Sbjct: 33 FNPQQEAVEKGLL-SDENVLISAPTGSGKTLIALLAILSTLLEGGG-KVVYIVPLKALAE 90
Query: 759 ERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQS 818
E+ ++ + E L +V TGD D + ++ VIVTTPEK D ++R ++++
Sbjct: 91 EKYEEFS-RLE-ELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRP--SWIEE 146
Query: 819 VALIIIDEIHLLG-EDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNI 877
V L++IDEIHLLG RGPVLE IV+R+ ++ +R+VGLS L NA+++A WLN
Sbjct: 147 VDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE----LIRIVGLSATLPNAEEVADWLNA 202
Query: 878 T-KQGMYNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSS 936
+ + P R VP G GK+ + N + ++ + V++FV S
Sbjct: 203 KLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHS 262
Query: 937 RRQTRLTAIDLITILACETNPKMWVHTSDAEMDNI----VDNIKDSNLKLTIAFGIGFHH 992
R++ TA L ++ + + D I +D L + G+ FHH
Sbjct: 263 RKEAEKTAKKLRIKMSATLSDDEKIV-LDEGASPILIPETPTSEDEELAELVLRGVAFHH 321
Query: 993 AA 994
A
Sbjct: 322 AG 323
Score = 148 bits (375), Expect = 1e-36
Identities = 96/467 (20%), Positives = 172/467 (36%), Gaps = 69/467 (14%)
Query: 155 KGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGHATIITP-HEKLNHYLSLLTNQI 213
K T Y+ K G V I +LDVLQ+ GRAGRP Y+ G A I+ H++L + L
Sbjct: 364 KDTRRYDPKGG-IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSE 422
Query: 214 PIESNFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNID 273
P + L D LN L + ++
Sbjct: 423 PEP-----------------------------------IESKLGDELNLRTFLLGVISVG 447
Query: 274 EAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFNM 333
+AV WL + + R NP+ YG I + + L++ +I
Sbjct: 448 DAVSWLELTDFYERTFYNPQTYGEGMLRE------------EILASLRYLEENGLILDAD 495
Query: 334 RTRDLAITDLGRTASNYYIKHNDIELFTE---HMTKVLDDVGILSMISQAHEFEQLKVRD 390
A T+LG+ S YI ++F + + ++G+L +IS + +K+R+
Sbjct: 496 WEALHA-TELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRE 554
Query: 391 EELHELD-NLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSDLEYVNQNVI 449
E EL + +E + + + + + N+LLQ L + R+ + +D + +
Sbjct: 555 RESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYG 614
Query: 450 RIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQIKLVTNRGYQSPILKPDI 509
L I L A E L ++ K +I
Sbjct: 615 VAPGDLLRIAETAEWLSADLLALGKA--AERLAKILGLGLHVLR------------KLEI 660
Query: 510 LNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLLEIESKLLPITRTVLK 569
L+ + G+ E+L E+ +R + + + ++ L+ ++LLP+T +
Sbjct: 661 LSLRIEYGVRSEELLELVEIRGVGRVRARKLYNAGYKSLEDLRLIADPAELLPLTGIGER 720
Query: 570 IHLTIKANFSWNDKNKSTYAEPFWIWVEDPDSDFIYHSEYFLLSKKQ 616
+ I + + A F I V + D ++ H E +L+
Sbjct: 721 LVEAILESLGRDVLLSGR-AYFFSIEVRELDLLYVLHEEALILAGGL 766
Score = 59.7 bits (145), Expect = 6e-09
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 15 EVHLLHGDRGPVIEALVARTLRQIGQEVFKGV---KSLNRIQSLVYDTAYHTNENLLICA 71
E+ + L R L E+ KG + N Q V ++EN+LI A
Sbjct: 1 EIFMKEEKLATSKVKLDDRVL-----EILKGDGIDELFNPQQEAVEKGLL-SDENVLISA 54
Query: 72 PTGAGKTNVAMLTIAHQIKQH 92
PTG+GKT +A+L I + +
Sbjct: 55 PTGSGKTLIALLAILSTLLEG 75
Score = 50.5 bits (121), Expect = 5e-06
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 6 ELVKLLIIDEVHLLHGD-RGPVIEALVARTLRQ 37
E V L++IDE+HLL RGPV+E++VAR R
Sbjct: 145 EEVDLVVIDEIHLLGDRTRGPVLESIVARMRRL 177
Score = 45.5 bits (108), Expect = 1e-04
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 96 GTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTS 130
T Y+ K G V I +LDVLQ+ GRAGRP Y+
Sbjct: 365 DTRRYDPKGG-IVDIPVLDVLQMAGRAGRPGYDDY 398
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase. Members of this family
include the DEAD and DEAH box helicases. Helicases are
involved in unwinding nucleic acids. The DEAD box
helicases are involved in various aspects of RNA
metabolism, including nuclear transcription, pre mRNA
splicing, ribosome biogenesis, nucleocytoplasmic
transport, translation, RNA decay and organellar gene
expression.
Length = 169
Score = 114 bits (288), Expect = 3e-29
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Query: 700 NPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCF-RVFKQCPEAKVVYIAPLKALVK 758
PIQ Q + + +VL+ APTGSGKT+A + + + + + +AP + L +
Sbjct: 1 TPIQAQAIPAIL-SGKDVLVQAPTGSGKTLAFLLPILQALLPKKGGPQALVLAPTRELAE 59
Query: 759 ERVADWKVKFEARLKKKVVELTGDVTPDIQAI----SSASVIVTTPEKWDGVSRSWQNRN 814
+ + K F+ L +V LTG + QA A ++V TP + + R
Sbjct: 60 QIYEELKKLFKI-LGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRRG-KLK 117
Query: 815 YVQSVALIIIDEIHLLGE-DRGPVLEVIVSRVNFISSYTKRNVRLVGLS-TALANAKDL 871
++++ L+++DE H L + G LE I+SR+ + +++ LS T N +DL
Sbjct: 118 LLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLP-------PDRQILLLSATLPRNLEDL 169
Score = 44.9 bits (107), Expect = 4e-05
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 50 NRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQG 96
IQ+ + +++L+ APTG+GKT +L I +
Sbjct: 1 TPIQAQAIPAIL-SGKDVLVQAPTGSGKTLAFLLPILQALLPKKGGP 46
Score = 33.8 bits (78), Expect = 0.24
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 4 LTELVKLLIIDEVHLLHG-DRGPVIEALVARTLRQI 38
L + +KLL++DE H L G +E +++R
Sbjct: 118 LLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLPPDR 153
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional.
Length = 674
Score = 112 bits (281), Expect = 2e-25
Identities = 83/291 (28%), Positives = 135/291 (46%), Gaps = 27/291 (9%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
NV++ PT +GKT+ A + F K +YI PL++L E+ + ++ K
Sbjct: 39 NVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSRLRSLGMRVK 96
Query: 776 VVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG-EDR 834
+ D PD I V++ T EK D S + + V LI+ DEIH++G EDR
Sbjct: 97 ISIGDYDDPPDF--IKRYDVVILTSEKAD--SLIHHDPYIINDVGLIVADEIHIIGDEDR 152
Query: 835 GPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVPL 894
GP LE ++S + Y + R++ LS ++NA +LA WLN + + + RPVPL
Sbjct: 153 GPTLETVLS----SARYVNPDARILALSATVSNANELAQWLNASL-----IKSNFRPVPL 203
Query: 895 EVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEK-PVMIFVSSRRQTRLTAIDLITILAC 953
++ I + + + I + IK+ + V++FVSSR+ A LI
Sbjct: 204 KLGIL-YRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPE 262
Query: 954 ETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHHAAAEAAQSSALQ 1004
+ K V + + N+ D +L + G+ FHHA Q ++
Sbjct: 263 FNDFK--VSSENN-------NVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional.
Length = 720
Score = 108 bits (271), Expect = 5e-24
Identities = 86/295 (29%), Positives = 143/295 (48%), Gaps = 49/295 (16%)
Query: 716 NVLLGAPTGSGKTIAAEITCF-RVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
N++L PT SGKT+ AEI ++ ++ K VY+ PLKAL +E+ ++ K +L
Sbjct: 41 NLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKALAEEKYREF--KDWEKLGL 96
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGE-D 833
+V TGD + + +I+ T EK+D + R ++++ V L++ DEIHL+G D
Sbjct: 97 RVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLR--HGSSWIKDVKLVVADEIHLIGSYD 154
Query: 834 RGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSVRPVP 893
RG LE+I++ + +++GLS + NA++LA WLN RPV
Sbjct: 155 RGATLEMILTHML-------GRAQILGLSATVGNAEELAEWLNAEL-----VVSDWRPVK 202
Query: 894 LE--VHISGF----PGK--QYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAI 945
L V GF GK ++ +Y A+K+ K ++FV++RR A+
Sbjct: 203 LRKGVFYQGFLFWEDGKIERF---PNSWESLVYDAVKK---GKGALVFVNTRRSAEKEAL 256
Query: 946 DLITILACETNPKMWVHTSDAEM-------DNIVDNIKDSNLKLTIAFGIGFHHA 993
+L K+ + E+ D++ +N + LK + G+ FHHA
Sbjct: 257 EL--------AKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHA 303
Score = 42.1 bits (99), Expect = 0.001
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Query: 167 YVHIGILDVLQIFGRAGRPQYNTSGHATIIT----PHEKLNHYL--------SLLTNQIP 214
+ I +L++ Q+ GRAGRP+Y+ G A I+ P + + Y+ S+L+N+
Sbjct: 355 WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESA 414
Query: 215 IESNFVANLA 224
S +A +
Sbjct: 415 FRSQVLALIT 424
Score = 33.6 bits (77), Expect = 0.58
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 107 YVHIGILDVLQIFGRAGRPQYN---------TSDLGRTASNYYIKHNDIELFT 150
+ I +L++ Q+ GRAGRP+Y+ T++ YI +LF+
Sbjct: 355 WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFS 407
Score = 30.9 bits (70), Expect = 3.9
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 8 VKLLIIDEVHLLHG-DRGPVIEALVARTL 35
VKL++ DE+HL+ DRG +E ++ L
Sbjct: 139 VKLVVADEIHLIGSYDRGATLEMILTHML 167
Score = 29.8 bits (67), Expect = 8.6
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 44 KGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQI 89
+G++ L Q+ + +NL++ PT +GKT VA + + +++
Sbjct: 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKL 64
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 99.1 bits (247), Expect = 1e-23
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 17/205 (8%)
Query: 694 YKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPL 753
+ F P Q + L +V+L APTGSGKT+AA + K+ +V+ + P
Sbjct: 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGGRVLVLVPT 63
Query: 754 KALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAI---SSASVIVTTPEKWDGVSRSW 810
+ L ++ + K + K V GD + ++VTTP + +
Sbjct: 64 RELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLE-- 121
Query: 811 QNRNYVQSVALIIIDEIH-LLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS-TALANA 868
++ + +V L+I+DE H LL G LE ++ + +NV+L+ LS T
Sbjct: 122 NDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLL-------PKNVQLLLLSATPPEEI 174
Query: 869 KDLATWLNITKQGMYNFRPSVRPVP 893
++L P+
Sbjct: 175 ENLLELF---LNDPVFIDVGFTPLE 196
Score = 42.1 bits (99), Expect = 5e-04
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 44 KGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
G + L Q + ++++ APTG+GKT A+L +K+
Sbjct: 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG 52
Score = 29.4 bits (66), Expect = 8.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 8 VKLLIIDEVH-LLHGDRGPVIEALVARTLRQI 38
V L+I+DE H LL G G +E L+ + +
Sbjct: 130 VDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV 161
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
recombination, and repair].
Length = 1041
Score = 98.2 bits (245), Expect = 1e-20
Identities = 71/320 (22%), Positives = 127/320 (39%), Gaps = 50/320 (15%)
Query: 612 LSKKQVITKSEESLIMTI--PLSDPLPNQYLIRAMSDRYLGSVVQHS--MSFKHLIVPEL 667
+++ T EESL L + + + + +V +HS S + ++
Sbjct: 22 RVERKAATAEEESLKNIDISDLFERSVDMNKDPKEATDQVKAVDKHSEIESLNVGMRLDV 81
Query: 668 HPPHTNLLELQPLPVSALQQ-----PQYESLYKFSHF--------NPIQTQIFHCLYHTD 714
+ L A+ P ES + + +P Q + L
Sbjct: 82 RLSS------KELSDVAVPDDYDMVPDAESPFDLAPPAREYPFELDPFQQEAIAIL-ERG 134
Query: 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
+VL+ APT SGKT+ AE + +V+Y +P+KAL ++ D KF
Sbjct: 135 ESVLVCAPTSSGKTVVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAKFG----- 187
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRS--WQNRNYVQSVALIIIDEIHLLGE 832
V ++ G +T D+ A +V T E + R+ ++ ++ + ++ DE+H +G+
Sbjct: 188 DVADMVGLMTGDVSINPDAPCLVMTTE----ILRNMLYRGSESLRDIEWVVFDEVHYIGD 243
Query: 833 -DRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPS-VR 890
+RG V E ++ +VR V LS + NA++ A W+ + + R
Sbjct: 244 RERGVVWEEVI-------ILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHR 296
Query: 891 PVPLEVHISG----FPGKQY 906
PVPLE + F
Sbjct: 297 PVPLEHFVYVGKGLFDLVDE 316
Score = 31.6 bits (72), Expect = 2.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 64 NENLLICAPTGAGKTNVAMLTIA 86
E++L+CAPT +GKT VA IA
Sbjct: 134 GESVLVCAPTSSGKTVVAEYAIA 156
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction
only].
Length = 814
Score = 95.0 bits (237), Expect = 9e-20
Identities = 64/286 (22%), Positives = 107/286 (37%), Gaps = 54/286 (18%)
Query: 695 KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCF-RVFKQCPEA-----KVV 748
KF+ P Q H+ NVL+ APTGSGKT AA + + +
Sbjct: 19 KFTSLTPPQRYAIP-EIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYAL 77
Query: 749 YIAPLKAL---VKERVADWKVKFEARLKKKVVELTGDVT-----------PDIQAISSAS 794
YI+PLKAL ++ R+ + L +V GD P I
Sbjct: 78 YISPLKALNNDIRRRLEEP----LRELGIEVAVRHGDTPQSEKQKMLKNPPHI------- 126
Query: 795 VIVTTPEK------WDGVSRSWQNRNYVQSVALIIIDEIH-LLGEDRGPVLEVIVSRVNF 847
++TTPE ++ YV I+DEIH L RG L + + R+
Sbjct: 127 -LITTPESLAILLNSPKFRELLRDVRYV------IVDEIHALAESKRGVQLALSLERLRE 179
Query: 848 ISSYTKRNVRLVGLSTALANAKDLATWLNITKQGMYNFRPSV-RPVPLEVHISGFPGKQY 906
++ + + +GLS + +++A +L S + + ++V
Sbjct: 180 LAG----DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD 235
Query: 907 CPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDLITILA 952
A + + I +K+H + +IF ++R A L +
Sbjct: 236 EELWAALYERIAELVKKH---RTTLIFTNTRSGAERLAFRLKKLGP 278
Score = 36.5 bits (85), Expect = 0.086
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 62 HTNENLLICAPTGAGKTNVAMLTI 85
H+ EN+LI APTG+GKT A L +
Sbjct: 35 HSGENVLIIAPTGSGKTEAAFLPV 58
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional.
Length = 737
Score = 90.8 bits (226), Expect = 1e-18
Identities = 74/305 (24%), Positives = 132/305 (43%), Gaps = 61/305 (20%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
N+L PT SGKT+ AE+ + + K +YI PL+AL E+ +++ E ++
Sbjct: 41 NLLAAIPTASGKTLIAELAMLKAIAR--GGKALYIVPLRALASEKFEEFERFEELGVRVG 98
Query: 776 VVELTGDVTPDIQAISSASVIVTTPEKWDGVSR---SWQNRNYVQSVALIIIDEIHLLG- 831
+ TGD + + +IV T EK D + R W + + +++DE+HL+
Sbjct: 99 IS--TGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPW-----LDDITCVVVDEVHLIDS 151
Query: 832 EDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNIT-----------KQ 880
+RGP LEV ++++ ++ ++++V LS + NA +LA WL+ ++
Sbjct: 152 ANRGPTLEVTLAKLRRLN----PDLQVVALSATIGNADELADWLDAELVDSEWRPIDLRE 207
Query: 881 GMY-----NFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVS 935
G++ +F S R V + +N + T + ++FVS
Sbjct: 208 GVFYGGAIHFDDSQREVEVPS------KDD------TLNLVLDTLEEGGQ----CLVFVS 251
Query: 936 SRRQTRLTAIDLITILACETNPKMWVHTSDAEMDNIVDNIKDS-------NLKLTIAFGI 988
SRR A + L AE+ + + I++ +L +A G
Sbjct: 252 SRRNAEGFAKRAASALKKTLTAA-----ERAELAELAEEIREVSDTETSKDLADCVAKGA 306
Query: 989 GFHHA 993
FHHA
Sbjct: 307 AFHHA 311
Score = 30.3 bits (69), Expect = 6.4
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 10 LLIIDEVHLL-HGDRGPVIEALVARTLRQI 38
+++DEVHL+ +RGP +E +A+ LR++
Sbjct: 140 CVVVDEVHLIDSANRGPTLEVTLAK-LRRL 168
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region.
Length = 144
Score = 75.1 bits (185), Expect = 7e-16
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 9/149 (6%)
Query: 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
+VLL APTGSGKT+AA + + +V+ +AP + L + K F +K
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKV 60
Query: 775 KVVELTGDVTPDIQAISSASVI-VTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED 833
+ + + +S + I V TP + + + ++ + L+I+DE H L
Sbjct: 61 GYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELE--RLKLSLKKLDLLILDEAHRLLNQ 118
Query: 834 RGPVLEVIVSRVNFISSYTKRNVRLVGLS 862
+L + I ++ +++ LS
Sbjct: 119 GFGLLGLK------ILLKLPKDRQVLLLS 141
Score = 35.0 bits (81), Expect = 0.065
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 65 ENLLICAPTGAGKTNVAMLTIAHQIKQH 92
++L+ APTG+GKT A+L I +
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDSL 28
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific
[General function prediction only].
Length = 830
Score = 73.3 bits (180), Expect = 4e-13
Identities = 62/244 (25%), Positives = 115/244 (47%), Gaps = 35/244 (14%)
Query: 716 NVLLGAPTGSGKTIAAEITCF-RVFKQCPEAKVVYIAPLKALVKERVADWKVKFE----- 769
N+L+ + T SGKT+ E+ R+ K++++ PL AL ++ D+K ++
Sbjct: 234 NLLVVSATASGKTLIGELAGIPRLLSG--GKKMLFLVPLVALANQKYEDFKERYSKLGLK 291
Query: 770 -------ARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALI 822
+R+K + + D +PD A +IV T E D + R+ ++ + + +
Sbjct: 292 VAIRVGMSRIKTREEPVVVDTSPD------ADIIVGTYEGIDYLLRTGKD---LGDIGTV 342
Query: 823 IIDEIHLLG-EDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLATWLNITKQG 881
+IDEIH L E+RGP L+ ++ R+ ++ + + LS + N ++LA L K
Sbjct: 343 VIDEIHTLEDEERGPRLDGLIGRLRYLFP----GAQFIYLSATVGNPEELAKKLGA-KLV 397
Query: 882 MYNFRPSVRPVPLEVHIS-GFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQT 940
+Y+ RPVPLE H+ + +A++ K ++ ++F SRR+
Sbjct: 398 LYD----ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRC 453
Query: 941 RLTA 944
A
Sbjct: 454 HELA 457
Score = 30.1 bits (68), Expect = 7.5
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 40 QEVFK--GVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAML 83
+ + K G++ L +Q L + ENLL+ + T +GKT + L
Sbjct: 206 KRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGEL 251
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA
ligase-associated. Members of this protein family are
DEAD/DEAH box helicases found associated with a
bacterial ATP-dependent DNA ligase, part of a four-gene
system that occurs in about 12 % of prokaryotic
reference genomes. The actual motif in this family is
DE[VILW]H.
Length = 803
Score = 60.3 bits (147), Expect = 4e-09
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 51/186 (27%)
Query: 718 LLGAPTGSGKTIAA------EITCFRVFKQCPEAKVVYIAPLKAL-----------VKER 760
LL APTGSGKT+A ++ K+ +YI PL+AL ++E
Sbjct: 32 LLIAPTGSGKTLAGFLPSLIDLAGPEKPKKGL--HTLYITPLRALAVDIARNLQAPIEEL 89
Query: 761 VADWKVKFEARLKKKVVELTGDVTPDIQAISSAS---VIVTTPEKWDGVSRSWQ------ 811
+V E R TGD + +A +++TTPE S
Sbjct: 90 GLPIRV--ETR--------TGDTSSSERARQRKKPPDILLTTPE-------SLALLLSYP 132
Query: 812 -NRNYVQSVALIIIDEIH-LLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAK 869
+ + +++DE H L G RG LE+ ++R+ ++ +R GLS + N +
Sbjct: 133 DAARLFKDLRCVVVDEWHELAGSKRGDQLELALARLRRLAP----GLRRWGLSATIGNLE 188
Query: 870 DLATWL 875
+ L
Sbjct: 189 EARRVL 194
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal
domain including a metal-binding cysteine cluster
[General function prediction only].
Length = 851
Score = 55.5 bits (134), Expect = 1e-07
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 22/133 (16%)
Query: 710 LYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALV---KERVADWKV 766
L NV++ TGSGKT + + + P A+ + + P AL ER+
Sbjct: 81 LIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLR---- 136
Query: 767 KFEARLKKKVV--ELTGDVTP---DIQAISSASVIVTTPEKWD-----GVSRS-WQNRNY 815
+ + L KV TGD P + +++T P+ W RN
Sbjct: 137 ELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRN- 195
Query: 816 VQSVALIIIDEIH 828
+ +++DE+H
Sbjct: 196 ---LKYLVVDELH 205
Score = 30.8 bits (70), Expect = 4.9
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 16/69 (23%)
Query: 23 RGPVIEALVARTLRQIGQEVFKGVKSLNRIQSLVYDTA--YHTNENLLICAPTGAGKTNV 80
+ ALV G++ L Q D N+++ TG+GKT
Sbjct: 56 DESLKSALVKA-----------GIERLYSHQ---VDALRLIREGRNVVVTTGTGSGKTES 101
Query: 81 AMLTIAHQI 89
+L I +
Sbjct: 102 FLLPILDHL 110
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr;
Provisional.
Length = 1490
Score = 52.6 bits (126), Expect = 1e-06
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 60/196 (30%)
Query: 721 APTGSGKTIAAEITCF-RVFK-QCPEAK---------VVYIAPLKAL------------- 756
APTGSGKT+AA + R+F+ + + ++YI+P+KAL
Sbjct: 3 APTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLK 62
Query: 757 ----VKERVADWKVKFEARLKKKVVELTGDVT-----------PDIQAISSASVIVTTPE 801
+ R + +V ++ TGD PDI ++TTPE
Sbjct: 63 GIADERRRRGETEVNLRVGIR------TGDTPAQERSKLTRNPPDI--------LITTPE 108
Query: 802 KWDGVSRSWQNRNYVQSVALIIIDEIH-LLGEDRGPVLEVIVSRVN-FISSYTKRNVRLV 859
+ S + R ++ V +IIDE+H + G RG L + + R++ + + +R +
Sbjct: 109 SLYLMLTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQR----I 163
Query: 860 GLSTALANAKDLATWL 875
GLS + +A D+A +L
Sbjct: 164 GLSATVRSASDVAAFL 179
>gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional.
Length = 876
Score = 49.9 bits (120), Expect = 7e-06
Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 36/195 (18%)
Query: 695 KFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAA------EITCFRVFKQCPEAKV- 747
KF F P Q L H NVL+ +PTGSGKT+AA E+ + E KV
Sbjct: 29 KFGTFTPPQRYAIP-LIHEGKNVLISSPTGSGKTLAAFLAIIDELF-RLGREGELEDKVY 86
Query: 748 -VYIAPLKALVKERVADWKVKFEARLK--KKVVELTGDVTPDI-QAI-----SSAS---- 794
+Y++PL+AL D E L +++ + G+ P+I AI SS
Sbjct: 87 CLYVSPLRALNN----DIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKM 142
Query: 795 ------VIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED-RGPVLEVIVSRVNF 847
+++TTPE + S + R +++V +I+DEIH L E+ RG L + + R+
Sbjct: 143 LKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEE 202
Query: 848 ISSYTKRNVRLVGLS 862
+ +GLS
Sbjct: 203 L---AGGEFVRIGLS 214
Score = 37.2 bits (87), Expect = 0.059
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 62 HTNENLLICAPTGAGKTNVAMLTI 85
H +N+LI +PTG+GKT A L I
Sbjct: 45 HEGKNVLISSPTGSGKTLAAFLAI 68
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
Length = 773
Score = 47.9 bits (115), Expect = 3e-05
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 714 DNNVLLGAPTGSGKT-IAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARL 772
N L+ PTG GKT IA + R+ K KV+ +AP K LV++ ++ KF
Sbjct: 29 KKNTLVVLPTGLGKTAIALLVIAERLHK--KGGKVLILAPTKPLVEQHAEFFR-KFLNIP 85
Query: 773 KKKVVELTGDVTPD--IQAISSASVIVTTPE--KWDGVSRSWQNRNYVQSVALIIIDEIH 828
++K+V TG+V+P+ + A VIV TP+ + D ++ R ++ V+L+I DE H
Sbjct: 86 EEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA----GRISLEDVSLLIFDEAH 141
Score = 37.9 bits (89), Expect = 0.033
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 53 QSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIA 86
Q L+ TA +N L+ PTG GKT +A+L IA
Sbjct: 20 QQLLAATA--LKKNTLVVLPTGLGKTAIALLVIA 51
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication,
recombination, and repair].
Length = 542
Score = 46.6 bits (111), Expect = 7e-05
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 22/135 (16%)
Query: 703 QTQIFH-CLYHTDNNVLLGAPTGSGKT-IAAEITCFRVFKQCPEAKVVYIAPLKALVKER 760
Q I L+ N L+ PTG GKT IAA + R + KV+++AP K LV +
Sbjct: 20 QLNIAAKALFK---NTLVVLPTGLGKTFIAAMVIANR-LRWFGG-KVLFLAPTKPLVLQH 74
Query: 761 VADWKVKFEARLKKKVVELTGDVTPD--IQAISSASVIVTTPEKWDGVSRSWQN-----R 813
+ K + ++ LTG+V P+ + + V V TP+ +N R
Sbjct: 75 AEFCR-KVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQ-------VVENDLKAGR 126
Query: 814 NYVQSVALIIIDEIH 828
+ V+L+I DE H
Sbjct: 127 IDLDDVSLLIFDEAH 141
Score = 33.9 bits (78), Expect = 0.46
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 65 ENLLICAPTGAGKTNVAMLTIA 86
+N L+ PTG GKT +A + IA
Sbjct: 30 KNTLVVLPTGLGKTFIAAMVIA 51
>gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense
mechanisms].
Length = 733
Score = 41.3 bits (97), Expect = 0.003
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 20/141 (14%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVF--KQCPEAKVVYIAPLKALV-------KERVAD--- 763
V+L APTG GKT A+ I + K +++V+Y+ P + ++ KE
Sbjct: 216 LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275
Query: 764 ------WKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDG--VSRSWQNRNY 815
K L+ L T D ++IV TP + V
Sbjct: 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLA 335
Query: 816 VQSVALIIIDEIHLLGEDRGP 836
+ +L+I+DE+HL ++
Sbjct: 336 LLLTSLVILDEVHLYADETML 356
Score = 32.8 bits (75), Expect = 1.1
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 64 NENLLICAPTGAGKTNVAMLTIAHQIKQHI 93
+ +++ APTG GKT +++ + + I
Sbjct: 214 SLLVVLEAPTGYGKTEASLILALALLDEKI 243
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis].
Length = 513
Score = 40.9 bits (96), Expect = 0.003
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 685 LQQPQYESLYK--FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC 742
L ++L F PIQ + +VL A TG+GKT A + + +
Sbjct: 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAG-RDVLGQAQTGTGKTAAFLLPLLQKILKS 94
Query: 743 PEAKVVY---IAPLKALVKE--RVADWKVKFEARLKKKVVELTGDVTPDIQAISSAS--- 794
E K V +AP + L + K L +V + G V+ Q +
Sbjct: 95 VERKYVSALILAPTRELAVQIAEELRKLGKNLGGL--RVAVVYGGVSIRKQIEALKRGVD 152
Query: 795 VIVTTP 800
++V TP
Sbjct: 153 IVVATP 158
>gnl|CDD|222875 PHA02558, uvsW, UvsW helicase; Provisional.
Length = 501
Score = 40.4 bits (95), Expect = 0.005
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 706 IFHCLYHTDNNVLLGAPTGSGKT-IAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADW 764
++ L + N LL PT +GK+ I ++ R + + E KV+ I P +LV + + D+
Sbjct: 123 VYEGLKN--NRRLLNLPTSAGKSLIQYLLS--RYYLENYEGKVLIIVPTTSLVTQMIDDF 178
Query: 765 KVKFEARLKKK--VVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALI 822
+ RL + + ++ D + A ++V+T W + Q + + ++
Sbjct: 179 V---DYRLFPREAMHKIYSGTAKD----TDAPIVVST---WQSAVK--QPKEWFDQFGMV 226
Query: 823 IIDEIHL 829
I+DE HL
Sbjct: 227 IVDECHL 233
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II
[Transcription / DNA replication, recombination, and
repair].
Length = 442
Score = 38.6 bits (90), Expect = 0.017
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 17/121 (14%)
Query: 713 TDNNVLLGAPTGSGKTI-AAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771
T+ ++ PTG+GKT+ AAE + + P K L+ + K
Sbjct: 54 TERRGVIVLPTGAGKTVVAAEAIAELK------RSTLVLVPTKELLDQWAEALKKFLL-- 105
Query: 772 LKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQ-SVALIIIDEIHLL 830
L ++ G + + A V V T ++R ++ LII DE+H L
Sbjct: 106 LNDEIGIYGGG----EKELEPAKVTVAT---VQTLARRQLLDEFLGNEFGLIIFDEVHHL 158
Query: 831 G 831
Sbjct: 159 P 159
Score = 32.0 bits (73), Expect = 1.7
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 68 LICAPTGAGKTNVAMLTIAHQIKQ 91
+I PTGAGKT VA ++K+
Sbjct: 59 VIVLPTGAGKTVVAAE-AIAELKR 81
>gnl|CDD|224120 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA
replication, recombination, and repair].
Length = 654
Score = 35.9 bits (83), Expect = 0.13
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 710 LYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756
+L+ APTG+GKT+A + + + KV+ KAL
Sbjct: 30 ALKGGEGLLIEAPTGTGKTLAY-LLPALAYAREEGKKVIISTRTKAL 75
>gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative
DEAH-box helicase. A conserved gene neighborhood widely
spread in the Actinobacteria contains this
uncharacterized DEAH-box family helicase encoded
convergently towards an operon of genes for protein
homologous to type II secretion and pilus formation
proteins. The context suggests that this helicase may
play a role in conjugal transfer of DNA.
Length = 742
Score = 35.9 bits (83), Expect = 0.15
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 710 LYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756
L H +V++ T SGK++A ++ P A +Y+AP KAL
Sbjct: 47 LAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKAL 93
>gnl|CDD|233483 TIGR01587, cas3_core, CRISPR-associated helicase Cas3. This
model represents the highly conserved core region of an
alignment of Cas3, a protein found in association with
CRISPR repeat elements in a broad range of bacteria and
archaea. Cas3 appears to be a helicase, with regions
found by pfam00270 (DEAD/DEAH box helicase) and
pfam00271 (Helicase conserved C-terminal domain). Some
but not all members have an N-terminal HD domain region
(pfam01966) that is not included within this model
[Mobile and extrachromosomal element functions, Other].
Length = 358
Score = 34.7 bits (80), Expect = 0.25
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHIS 94
L+I APTG GKT A+L H IK +
Sbjct: 2 LVIEAPTGYGKTEAALLWALHSIKSQKA 29
Score = 30.9 bits (70), Expect = 3.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 717 VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756
+++ APTG GKT AA + K +V+ P +A
Sbjct: 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRAT 41
>gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
DEAD/DEAH box helicase DNA helicase cas3'; Often but
not always is fused to HD nuclease domain; signature
gene for Type I.
Length = 353
Score = 34.3 bits (79), Expect = 0.31
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHIS 94
L+I APTG GKT A+L H +K +
Sbjct: 2 LVIEAPTGYGKTEAALLWALHSLKSQKA 29
Score = 31.2 bits (71), Expect = 2.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 717 VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKAL 756
+++ APTG GKT AA + K +V+ P +A
Sbjct: 2 LVIEAPTGYGKTEAALLWALHSLKSQKADRVIIALPTRAT 41
>gnl|CDD|205721 pfam13543, KSR1-SAM, SAM like domain present in kinase suppressor
RAS 1.
Length = 129
Score = 31.9 bits (73), Expect = 0.61
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 505 LKPDILNKIEQRGLTVEDLREMPAKEISYMLRD 537
L P+ + I R LT+E L EM KE+ +L +
Sbjct: 78 LSPETIQAILPRLLTLEQLLEMSDKELRQILSN 110
>gnl|CDD|218292 pfam04851, ResIII, Type III restriction enzyme, res subunit.
Length = 100
Score = 31.0 bits (71), Expect = 0.74
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVK 758
L+ TGSGKT+ A R+ K + KV+++ P K L++
Sbjct: 19 KRGLIVMATGSGKTLTAAALIARLAK--GKKKVLFVVPRKDLLE 60
Score = 29.9 bits (68), Expect = 1.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 64 NENLLICAPTGAGKTNVAMLTIAH 87
+ LI TG+GKT A IA
Sbjct: 18 KKRGLIVMATGSGKTLTAAALIAR 41
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The
ATP-dependent DNA helicase RecQ of E. coli is about 600
residues long. This model represents bacterial proteins
with a high degree of similarity in domain architecture
and in primary sequence to E. coli RecQ. The model
excludes eukaryotic and archaeal proteins with RecQ-like
regions, as well as more distantly related bacterial
helicases related to RecQ [DNA metabolism, DNA
replication, recombination, and repair].
Length = 591
Score = 33.1 bits (76), Expect = 0.81
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 696 FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKA 755
+ F P Q +I + +VL+ PTG GK++ C++V + V I+PL +
Sbjct: 11 YDDFRPGQEEIISHVL-DGRDVLVVMPTGGGKSL-----CYQVPALLLKGLTVVISPLIS 64
Query: 756 LVKERVADWKVK--FEARLKKKVVELTGDVTPDI-QAISSASV--IVTTPEKWDGVSRSW 810
L+K++V + A L L+ DI +A+ + + + PE+ +
Sbjct: 65 LMKDQVDQLRAAGVAAAYLNST---LSAKEQQDIEKALVNGELKLLYVAPERL--EQDYF 119
Query: 811 QNRNYVQSVALIIIDEIH 828
N +AL+ +DE H
Sbjct: 120 LNMLQRIPIALVAVDEAH 137
>gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair].
Length = 408
Score = 33.0 bits (76), Expect = 0.93
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 705 QIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIA-------PLKALV 757
+ N + + G GKT + P A+VVY+ +KAL
Sbjct: 104 AVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALR 163
Query: 758 KERVADWKVKFEARL 772
+ +K K+ L
Sbjct: 164 DNEMEKFKEKYSLDL 178
>gnl|CDD|220041 pfam08846, DUF1816, Domain of unknown function (DUF1816).
Crocosphaera watsonii WH 8501 CpcD phycobilisome
linker-like is associated with the pfam01383 domain
suggesting this presumed domain could have a role in
phycobilisomes.
Length = 68
Score = 29.5 bits (67), Expect = 1.4
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 864 ALANAKDLATWLNITKQG---MYNFRPSVRPVPLEVHISGF 901
+LAN LA W + Q Y F P + E + GF
Sbjct: 1 SLANGLGLAWWAEVETQEPDVTYWFGPFLTREEAEAALPGF 41
>gnl|CDD|227922 COG5635, COG5635, Predicted NTPase (NACHT family) [Signal
transduction mechanisms].
Length = 824
Score = 32.1 bits (73), Expect = 1.8
Identities = 31/221 (14%), Positives = 55/221 (24%), Gaps = 25/221 (11%)
Query: 322 ILDKAHMIRFNMRTRDLAITDLG-RTASNYYIKHNDIELFTEHMTKVLDDVGILSMISQA 380
D I M R L +DLG R E + + + +
Sbjct: 17 TADPLLGIPDLMALRSLQASDLGTRKGKPALEFKA--EEAEKLAPEEGLKTRQPKIRTFL 74
Query: 381 HEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGRVNSFSLVSD 440
+ E L E + LL G + D
Sbjct: 75 LADARRSTFGEICQVLLLNLNEILLHAKVFKELWLGETWLRLL------GA---QTTRID 125
Query: 441 LEYVNQNVIRIIRALFEITLHRNNAIMA--ARFLKFALMFETKQWP----HETPLR--QI 492
+ + +R +I + AR ++ + K E PL +
Sbjct: 126 DDPLLLQQLRCEWQESKILAQAGTLLELLIARGVQS----QDKLIDVNILEEVPLASQRS 181
Query: 493 KLVTN-RGYQSPILKPDILNKIEQRGLTVEDLREMPAKEIS 532
K + + + L ++ Q + L + A E
Sbjct: 182 KRIFDLNTKGEKRFDEEFLLELTQSADDQDALPGLEALEKY 222
>gnl|CDD|217820 pfam03968, OstA, OstA-like protein. This family of proteins are
mostly uncharacterized. However the family does include
E. coli OstA that has been characterized as an organic
solvent tolerance protein.
Length = 113
Score = 29.9 bits (68), Expect = 2.2
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 767 KFEARLKKKVVELTGDVT---PDIQAISSASVIVTTPEKWDGVSR 808
E KK V TG+V I + + V+VT + +G+ R
Sbjct: 6 NLELDDKKGVATFTGNVVVTQGSIT-LRADKVVVTQDKGKNGIER 49
>gnl|CDD|185275 PRK15377, PRK15377, E3 ubiquitin-protein ligase SopA; Provisional.
Length = 782
Score = 31.6 bits (71), Expect = 2.7
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 619 TKSEESLIMTIPLSDPLPNQYLIRAMSDRYLGSVVQHSMSFKHLIVPELHPPHTNLLELQ 678
+ +S++MTI NQ +RAM + + S+ L + P ++L
Sbjct: 350 HNNGKSILMTINTLPDKYNQEKVRAMEE------LVKSIRLGRLTEAAIRPVESSL---- 399
Query: 679 PLPVSALQQPQYESLYKFSHF-NPIQTQIFHCLYHTDNNVLLGAP 722
VS L P Y + P+Q + F T N+V L AP
Sbjct: 400 ---VSVLAHPPYTQSALIQEWLEPVQERFFAHQCQTYNDVPLPAP 441
>gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing,
ribosome biogenesis and RNA degradation. The name
derives from the sequence of the Walker B motif (motif
II). This domain contains the ATP- binding region.
Length = 203
Score = 30.5 bits (70), Expect = 3.0
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 694 YKFSHFNPIQTQ-IFHCLYHTDNNVLLGAPTGSGKTIA 730
F PIQ + I L D V+ A TGSGKT A
Sbjct: 17 LGFEKPTPIQARAIPPLLSGRD--VIGQAQTGSGKTAA 52
>gnl|CDD|110677 pfam01695, IstB_IS21, IstB-like ATP binding protein. This
protein contains an ATP/GTP binding P-loop motif. It is
found associated with IS21 family insertion sequences.
The function of this protein is unknown, but it may
perform a transposase function.
Length = 178
Score = 30.3 bits (69), Expect = 3.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 63 TNENLLICAPTGAGKTNVAMLTIAHQ 88
ENLL+ P G GKT++A + HQ
Sbjct: 46 QAENLLLLGPPGVGKTHLAC-ALGHQ 70
>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 31.1 bits (71), Expect = 3.1
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 24/72 (33%)
Query: 67 LLICAPTGAGKTNVAMLTIAH------------QIKQHISQGT------EMYNAKHGCYV 108
++I PT +GKT +A + +A Q+ + + GT E+ H
Sbjct: 6 IVIAGPTASGKTALA-IALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPH---- 60
Query: 109 H-IGILDVLQIF 119
H I I D + +
Sbjct: 61 HLIDIRDPTESY 72
>gnl|CDD|236148 PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA
polymerase III subunit epsilon; Validated.
Length = 928
Score = 31.5 bits (72), Expect = 3.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 55 LVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
VY A +E+ LI A TG GK+ +L A+ K+
Sbjct: 268 EVYT-ALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK 304
>gnl|CDD|182940 PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase;
Provisional.
Length = 415
Score = 31.1 bits (71), Expect = 3.4
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 11/37 (29%)
Query: 506 KPDILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGD 542
KP+I +DLRE PA EI+ ++ H G+
Sbjct: 331 KPNI-----------DDLRESPAMEIAELIAQWHSGE 356
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 29.6 bits (66), Expect = 4.1
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 63 TNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
E +LI P G+GKT +A +A ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARA-LARELGPP 29
>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 30.6 bits (70), Expect = 4.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 716 NVLLGAPTGSGKTIAAE 732
N+LL PTGSGKT+ A+
Sbjct: 99 NILLIGPTGSGKTLLAQ 115
>gnl|CDD|226581 COG4096, HsdR, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 875
Score = 30.9 bits (70), Expect = 4.5
Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 26/164 (15%)
Query: 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
N LL TG+GKT A R+ K +V+++A ALV + FE L
Sbjct: 186 NRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYG----AFEDFLPF 241
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVA-----LIIIDEIHL 829
+ D + +S+ + ++T + R Q + + LI+IDE H
Sbjct: 242 GTKM---NKIEDKKGDTSSEIYLSTYQTM--TGRIEQKEDEYRRFGPGFFDLIVIDEAH- 295
Query: 830 LGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLSTALANAKDLAT 873
RG I S + I Y + GL+ D +T
Sbjct: 296 ----RG-----IYSEWSSILDYF--DAATQGLTATPKETIDRST 328
>gnl|CDD|233261 TIGR01073, pcrA, ATP-dependent DNA helicase PcrA. Designed to
identify pcrA members of the uvrD/rep subfamily [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 726
Score = 30.5 bits (69), Expect = 5.4
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 49 LNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
LN Q + T LLI A G+GKT V IAH I +
Sbjct: 5 LNPEQR---EAVKTTEGPLLIMAGAGSGKTRVLTHRIAHLIAEK 45
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication,
recombination, and repair].
Length = 590
Score = 30.3 bits (69), Expect = 5.6
Identities = 54/274 (19%), Positives = 105/274 (38%), Gaps = 62/274 (22%)
Query: 694 YKFSHFNPIQTQ-IFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAP 752
+ ++ F P Q + I L D V++ PTG GK++ C+++ E + ++P
Sbjct: 13 FGYASFRPGQQEIIDALLSGKDTLVVM--PTGGGKSL-----CYQIPALLLEGLTLVVSP 65
Query: 753 LKALVKERVA------------DWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTP 800
L +L+K++V + + E R + +G + ++ +P
Sbjct: 66 LISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLK----------LLYISP 115
Query: 801 EKWDGVSRSWQNRNYVQSVALIIIDEIHLL---GED-RGPVLEVIVSRVNFISSYTKRNV 856
E+ +S + ++L+ IDE H + G D R + R N
Sbjct: 116 ERL--MSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGL------PNP 167
Query: 857 RLVGLSTALANAK---DLATWLNITKQGMY--NF-RPSVRPVPLEVHISGFPGKQYCPRM 910
++ L TA A + D+ L + ++ +F RP++ L+V G P Q
Sbjct: 168 PVLAL-TATATPRVRDDIREQLGLQDANIFRGSFDRPNLA---LKVVEKGEPSDQLA--- 220
Query: 911 AKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTA 944
+ A K +I+ +R++ A
Sbjct: 221 -------FLATVLPQLSKSGIIYCLTRKKVEELA 247
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 28.8 bits (65), Expect = 6.1
Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 32/139 (23%)
Query: 712 HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771
+L +GSGKT R+ +Q P +VVY+ E + K
Sbjct: 2 RGAGIGVLTGESGSGKTTLLR----RLARQLPNRRVVYV--------EAPSLGTPK---D 46
Query: 772 LKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831
L +K++ G TT E + + + + R L+IIDE L
Sbjct: 47 LLRKILRALGLPLSGG----------TTAELLEAILDALKRRG----RPLLIIDEAQHLS 92
Query: 832 EDRGPVLEVIVSRVNFISS 850
+ LE + +
Sbjct: 93 LE---ALEELRDLYDLSEK 108
>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX;
Provisional.
Length = 412
Score = 30.1 bits (69), Expect = 6.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 716 NVLLGAPTGSGKTIAAE 732
N+LL PTGSGKT+ A+
Sbjct: 110 NILLIGPTGSGKTLLAQ 126
>gnl|CDD|99978 cd03806, GT1_ALG11_like, This family is most closely related to the
GT1 family of glycosyltransferases. ALG11 in yeast is
involved in adding the final 1,2-linked Man to the
Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of
the ER. The deletion analysis of ALG11 was shown to
block the early steps of core biosynthesis that takes
place on the cytoplasmic face of the ER and lead to a
defect in the assembly of lipid-linked oligosaccharides.
Length = 419
Score = 30.2 bits (69), Expect = 6.8
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 453 RALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
+ F I L R + LK+ + E +P T L Q
Sbjct: 55 ESRFNIELDRPRIVF--FLLKYRKLVEASTYPRFTLLGQ 91
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 30.1 bits (68), Expect = 6.9
Identities = 46/309 (14%), Positives = 87/309 (28%), Gaps = 75/309 (24%)
Query: 66 NLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMY------------NAKHGCYVHIG-- 111
N+LI P+G+GK+ + +A + +++G + A G + +G
Sbjct: 3 NMLIVGPSGSGKS-TLLKLLAL---RLLARGGRVIVIDPKGEYSGLARALGGEVIDLGPG 58
Query: 112 ---ILDVLQIFGRAGRPQYNTSDLGRTASNYYIK-HNDIELFTEHMTKGTE--------- 158
L+ L IF + +D + + L +T E
Sbjct: 59 SGISLNPLDIFPTGEDAEELEADAHARKLDLLLALLELAALLGRDLTPREETALDRALRA 118
Query: 159 MYNAKHGCYVHIGIL-DVLQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIES 217
+Y + L D+L+ + E+L L L +
Sbjct: 119 LYEEEGIDRDAYPTLSDLLEALRDEPDELREAALVDDEEEAAEELALALERLLD------ 172
Query: 218 NFVANLADNLNAEVALGTIGNIDEAVRWLIIYINFVANLADNLNAEVALGTIGNIDEAVR 277
L + T+ ++D R ++ + ++ L +D+A+
Sbjct: 173 ---GALGGLFDGP---TTV-DLDLDAR--LVVFD-LSGLKGP-----------ELDKALM 211
Query: 278 WLSYSYLHVRMRIN-----PREYGISYDEVATDPDLIQHRTTLIENAAQILDKAHMIRFN 332
L R I DE R A LD+ + R
Sbjct: 212 AAVLLALWAAARRAFEAPRGLRKLIVIDEA--------WRLLSSPEGADFLDE--LAR-E 260
Query: 333 MRTRDLAIT 341
R +
Sbjct: 261 GRKYGAGVI 269
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.
Length = 629
Score = 29.8 bits (67), Expect = 8.5
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 700 NPIQTQIFHCLYHTDN--NVLLGAPTGSGKTIAAEITCFRVFKQCPEAK---VVYIAPLK 754
+PIQ + C+ H N +VL A TGSGKT A + PE K ++ +AP +
Sbjct: 30 SPIQAE---CIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLD--PELKAPQILVLAPTR 84
Query: 755 ALVKERVADWKVKFEARLKK-KVVELTGDVTPDIQAIS---SASVIVTTP 800
L + VA+ F ++ VV L G D+Q + ++V TP
Sbjct: 85 ELAVQ-VAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTP 133
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 52,726,415
Number of extensions: 5287636
Number of successful extensions: 5208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5128
Number of HSP's successfully gapped: 101
Length of query: 1034
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 927
Effective length of database: 6,191,724
Effective search space: 5739728148
Effective search space used: 5739728148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.5 bits)