RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13788
(1034 letters)
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 124 bits (313), Expect = 2e-33
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 372 GILSMISQAHEFEQLKVRDEELHELDNLTQECCEIPIRGGSENVHGKVNILLQTLLSRGR 431
G++ +IS A E+E + +R E + L L Q+ + H K N+LLQ LSR +
Sbjct: 5 GLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQ 64
Query: 432 VNSFSLVSDLEYVNQNVIRIIRALFEITLHRNNAIMAARFLKFALMFETKQWPHETPLRQ 491
+++ L SD E + IR+I+A ++ A ++ A M W ++ L+Q
Sbjct: 65 LSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQ 123
Query: 492 IKLVTNRGYQSPILKPDILNKIEQRGL-TVEDLREMPAKEISYMLR-DPHVGDKVKQCAW 549
+ P + + + +G+ +V D+ EM +E + +L+ V +
Sbjct: 124 L----------PHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCN 173
Query: 550 EIP 552
P
Sbjct: 174 RYP 176
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 85
Score = 71.8 bits (176), Expect = 5e-16
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 23/98 (23%)
Query: 255 NLADNLNAEVALGTIGNIDEAVRWLSYSYLHVRMRINPREYGISYDEVATDPDLIQHRTT 314
+L + + + G ++E + + ++ + I+
Sbjct: 11 HLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSY-------------------- 50
Query: 315 LIENAAQILDKAHMIRFNMRTRDLAITDLGRTASNYYI 352
+E + L+ M+ LA T LG S YI
Sbjct: 51 ELERVVRQLENWGMVVEAA---HLAPTKLGSLVSRLYI 85
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 72.3 bits (176), Expect = 7e-15
Identities = 57/202 (28%), Positives = 102/202 (50%), Gaps = 18/202 (8%)
Query: 676 ELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITC 735
+ V L++ E L+ P Q + ++ + N+LL PT +GKT+ AE+
Sbjct: 9 SISSYAVGILKEEGIEELF------PPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAM 61
Query: 736 FRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAISSASV 795
R + K +Y+ PL+AL E+ +K + L+ + TGD + + +
Sbjct: 62 VREAIKGG--KSLYVVPLRALAGEKYESFKKWEKIGLRIGIS--TGDYESRDEHLGDCDI 117
Query: 796 IVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIH-LLGEDRGPVLEVIVSRVNFISSYTKR 854
IVTT EK D S +++++V+ +++DEIH L E RG LE++V+++ +
Sbjct: 118 IVTTSEKAD--SLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR----RMNK 171
Query: 855 NVRLVGLSTALANAKDLATWLN 876
+R++GLS N ++A WL+
Sbjct: 172 ALRVIGLSATAPNVTEIAEWLD 193
Score = 35.3 bits (80), Expect = 0.019
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 44 KGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
+G++ L Q+ + + + +NLL+ PT AGKT +A + + + +
Sbjct: 21 EGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 62.7 bits (151), Expect = 1e-11
Identities = 29/211 (13%), Positives = 71/211 (33%), Gaps = 15/211 (7%)
Query: 671 HTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIA 730
+L L+ LQ+ + + F P Q +I + + L+ PTG GK++
Sbjct: 3 QAEVLNLESGAKQVLQE-----TFGYQQFRPGQEEIIDTVLS-GRDCLVVMPTGGGKSL- 55
Query: 731 AEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPDIQAI 790
C+++ V ++PL +L+K++V + A + +
Sbjct: 56 ----CYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGC 111
Query: 791 SSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDRGPVLEVIVSRVNFISS 850
+ + + + ++ + L+ +DE H + + +
Sbjct: 112 RTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171
Query: 851 YTKRNVRLVGLSTALANA--KDLATWLNITK 879
+ + L+ + +D+ L +
Sbjct: 172 FPTL--PFMALTATADDTTRQDIVRLLGLND 200
Score = 36.2 bits (82), Expect = 0.012
Identities = 16/140 (11%), Positives = 32/140 (22%), Gaps = 6/140 (4%)
Query: 35 LRQIGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHIS 94
+Q+ QE F G + Q + DT + L+ PTG GK+ + +
Sbjct: 13 AKQVLQETF-GYQQFRPGQEEIIDTVLS-GRDCLVVMPTGGGKSLCYQIPALLLNGLTVV 70
Query: 95 QGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFTEHMT 154
+ + L + + +
Sbjct: 71 ----VSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERL 126
Query: 155 KGTEMYNAKHGCYVHIGILD 174
+ +D
Sbjct: 127 MLDNFLEHLAHWNPVLLAVD 146
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 54.7 bits (131), Expect = 7e-09
Identities = 40/193 (20%), Positives = 81/193 (41%), Gaps = 25/193 (12%)
Query: 657 MSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQIFHCLYHTDNN 716
M+F L + + N+L A++ F IQ ++ + + N
Sbjct: 4 MNFNELNLSD------NILN-------AIRN------KGFEKPTDIQMKVIPLFLNDEYN 44
Query: 717 VLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKKV 776
++ A TGSGKT + I + + + + + P + L + + + + K
Sbjct: 45 IVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIA 104
Query: 777 VELTG-DVTPDIQAISSASVIVTTPEK-WDGVSRSWQNRNYVQSVALIIIDEIH-LLGED 833
G + P I+A+ +A+++V TP + D ++R N +++V I+DE +L
Sbjct: 105 KIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLN---LKNVKYFILDEADEMLNMG 161
Query: 834 RGPVLEVIVSRVN 846
+E I++ N
Sbjct: 162 FIKDVEKILNACN 174
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 50.2 bits (118), Expect = 2e-07
Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 15/196 (7%)
Query: 701 PIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKER 760
Q I+ + N L+ PTG GKT+ A + + KV+ +AP K LV +
Sbjct: 12 IYQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIAEYRLTKYG-GKVLMLAPTKPLVLQH 68
Query: 761 VADWKVKFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVA 820
++ F +K V TG+ +P+ ++ + A V + R ++ V+
Sbjct: 69 AESFRRLFNLPPEKIVAL-TGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVS 127
Query: 821 LIIIDEIHLLGEDRGPVLEVIVSRVNFISSYTKRNVRLVGLS----TALANAKDLATWLN 876
LI+ DE H + V + +N ++GL+ + ++ L
Sbjct: 128 LIVFDEAHRAVGNYAYVF------IAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLG 181
Query: 877 ITKQGMYN-FRPSVRP 891
I + P VRP
Sbjct: 182 IEHIEYRSENSPDVRP 197
Score = 40.9 bits (94), Expect = 3e-04
Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 5/130 (3%)
Query: 52 IQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIG 111
Q ++Y N LI PTG GKT +AM+ +++ ++ G + A V
Sbjct: 13 YQEVIYAKCK--ETNCLIVLPTGLGKTLIAMMIAEYRLTKY--GGKVLMLAPTKPLVLQH 68
Query: 112 ILDVLQIFGRAGRPQY-NTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHI 170
++F T + + + + T + + V +
Sbjct: 69 AESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSL 128
Query: 171 GILDVLQIFG 180
+ D
Sbjct: 129 IVFDEAHRAV 138
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 45.7 bits (107), Expect = 9e-06
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 7/105 (6%)
Query: 891 PVPLEVHISGFPGKQY---CPRMAKMNKPIYTAIKQHSPEKPVMIFVSSRRQTRLTAIDL 947
PVPL + + ++ K + + V++F S+RR TA+ L
Sbjct: 1 PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKL 60
Query: 948 ITILACETNPKMWVHTSDAEMDNIVDNIKDSNLKLTIAFGIGFHH 992
I A + + + + L + G FHH
Sbjct: 61 SAITAKYVENEGL----EKAILEENEGEMSRKLAECVRKGAAFHH 101
Score = 39.9 bits (92), Expect = 7e-04
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 165 GCYVHIGILDVLQIFGRAGRPQYNTSGHATIIT-PHEKLNHYLSLLTNQI 213
G I + + Q+ GRAGRP + G A II ++ + +
Sbjct: 151 GYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEP 200
Score = 33.0 bits (74), Expect = 0.14
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 78 TNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTS 130
T + ++ I + ++ G I + + Q+ GRAGRP +
Sbjct: 127 TPTLAAGVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRAGRPGMDER 176
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 43.0 bits (100), Expect = 9e-05
Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 26/194 (13%)
Query: 685 LQQPQYESLYK--FSHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQC 742
++ ++ IQ + + APTG GKT + +
Sbjct: 28 FLLKEFVEFFRKCVGEPRAIQKMWAKRI-LRKESFAATAPTGVGKTSFGLAMSLFLALKG 86
Query: 743 PEAKVVYIAPLKALVKERVADWKVKFEARLKKKVVELTGDVTPD---------IQAISSA 793
+ I P LV + + K+ + L G +Q + +
Sbjct: 87 K--RCYVIFPTSLLVIQAAETIR-KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNF 143
Query: 794 SVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLL-----GEDRGPVLEVIVSRVNFI 848
+++TT + ++ + I +D++ + D+ L +
Sbjct: 144 KIVITTTQFL------SKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTK 197
Query: 849 SSYTKRNVRLVGLS 862
S + L+ +
Sbjct: 198 SWVGEARGCLMVST 211
Score = 34.1 bits (77), Expect = 0.063
Identities = 19/137 (13%), Positives = 30/137 (21%), Gaps = 3/137 (2%)
Query: 40 QEVF-KGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTE 98
E F K V IQ + E+ APTG GKT+ + +
Sbjct: 34 VEFFRKCVGEPRAIQKMWAKRI-LRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVI 92
Query: 99 MYNAKHGCYVHIGILDVLQIFG-RAGRPQYNTSDLGRTASNYYIKHNDIELFTEHMTKGT 157
+ I + G N T
Sbjct: 93 FPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQF 152
Query: 158 EMYNAKHGCYVHIGILD 174
+ + + +D
Sbjct: 153 LSKHYRELGHFDFIFVD 169
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 40.8 bits (94), Expect = 2e-04
Identities = 17/148 (11%), Positives = 34/148 (22%), Gaps = 19/148 (12%)
Query: 715 NNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKK 774
+L G+GKT + +V + +K+
Sbjct: 8 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVL-------------APTRVVLSEMKE 54
Query: 775 KVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGEDR 834
L + + V ++ V + +II+DE H L
Sbjct: 55 AFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPAS 114
Query: 835 GPVLEVIVSRVNFISSYTKRNVRLVGLS 862
R + ++
Sbjct: 115 IAARGWAAHRARA------NESATILMT 136
Score = 36.2 bits (82), Expect = 0.006
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 64 NENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC 106
++ GAGKT + I + + + + +
Sbjct: 7 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVL 49
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 41.0 bits (95), Expect = 5e-04
Identities = 32/198 (16%), Positives = 72/198 (36%), Gaps = 12/198 (6%)
Query: 647 RYLGSVVQHSMSFKHLIVPELHPPHTNLLELQPLPVSALQQPQYESLYKFSHFNPIQTQI 706
+G + + +F + + L + + Y + + +
Sbjct: 63 GLVGQIKKFCDNFGYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAV 122
Query: 707 FHCLYHTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKV 766
F L + +L PT +G+++ + R + + E K++ I P AL + D+
Sbjct: 123 FEGLVN--RRRILNLPTSAGRSLI-QALLARYYLENYEGKILIIVPTTALTTQMADDFV- 178
Query: 767 KFEARLKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDE 826
+ + ++ G + D + + A V+V T + Q + + +++ DE
Sbjct: 179 DYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVV-----KQPKEWFSQFGMMMNDE 233
Query: 827 IHLLGEDRGPVLEVIVSR 844
HL G + I+S
Sbjct: 234 CHLAT---GKSISSIISG 248
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 38.7 bits (89), Expect = 0.002
Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 15/128 (11%)
Query: 715 NNVLLGAPTGSGKTIAAEIT-CFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773
++ G+GKT K+ + + +AP + + + + L+
Sbjct: 10 RLTIMDLHPGAGKTKRYLPAIVREAIKRGL--RTLILAPTRVVA-AEMEE-------ALR 59
Query: 774 KKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED 833
+ + V + + + V + LII+DE H
Sbjct: 60 GLPIRYQT-PAIRAEHTGREIVDLMCHATFT---MRLLSPIRVPNYNLIIMDEAHFTDPA 115
Query: 834 RGPVLEVI 841
I
Sbjct: 116 SIAARGYI 123
Score = 34.1 bits (77), Expect = 0.082
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 56 VYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
+ D + ++ GAGKT + I + +
Sbjct: 1 IEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR 37
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 34.4 bits (78), Expect = 0.021
Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 23/151 (15%)
Query: 712 HTDNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEAR 771
+ L APTGSGK+ + V+ + P A F A
Sbjct: 6 QSFQVAHLHAPTGSGKSTKVPAAYAAQGYK-----VLVLNPSVAATLG--------FGAY 52
Query: 772 LKKKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLG 831
+ K T + + + +T K+ +II DE H
Sbjct: 53 MSKAHGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGA-----YDIIICDECHSTD 107
Query: 832 EDRGPVLEVIVSRVNFISSYTKRNVRLVGLS 862
+ ++ + +V +
Sbjct: 108 ATSILGIGTVLDQAET-----AGARLVVLAT 133
Score = 29.8 bits (66), Expect = 0.82
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 62 HTNENLLICAPTGAGKTNVAMLTIAHQ 88
+ + + APTG+GK+ A Q
Sbjct: 6 QSFQVAHLHAPTGSGKSTKVPAAYAAQ 32
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 33.7 bits (76), Expect = 0.061
Identities = 22/133 (16%), Positives = 31/133 (23%), Gaps = 23/133 (17%)
Query: 714 DNNVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLK 773
D + PTGSGKT A + WK + +
Sbjct: 85 DKRGCIVLPTGSGKTHVAMAAINELSTPTLIV---------VPTLALAEQWKERLGIFGE 135
Query: 774 KKVVELTGDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEIHLLGED 833
+ V E +G + S L+I DE+H L
Sbjct: 136 EYVGEFSGRIKELKPLTVSTYDSAY-----------VNAEKLGNRFMLLIFDEVHHLP-- 182
Query: 834 RGPVLEVIVSRVN 846
I
Sbjct: 183 -AESYVQIAQMSI 194
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 32.6 bits (74), Expect = 0.078
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 14/97 (14%)
Query: 504 ILKPD---------ILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLL 554
++KPD IL + E++G + L+ M IS L + H + ++ + +
Sbjct: 7 MIKPDGVRRGLVGEILARFERKGFRIAALKLMQ---ISQELAERHYAEHREKPFFPGLVR 63
Query: 555 EIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEP 591
I S P+ VL+ + A P
Sbjct: 64 FITSG--PVVAMVLEGPGVVAEVRKMMGATHPKDALP 98
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 33.2 bits (74), Expect = 0.16
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 62 HTNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
L+ A G+GKT V IAH I+
Sbjct: 12 FVTGPCLVLAGAGSGKTRVITNKIAHLIRGC 42
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 32.5 bits (72), Expect = 0.24
Identities = 16/133 (12%), Positives = 34/133 (25%), Gaps = 9/133 (6%)
Query: 45 GVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKH 104
G K L+++ T + GKT I H + + +
Sbjct: 8 GSKELDKL----LQGGIETGSITEMFGEFRTGKT-----QICHTLAVTCQLPIDRGGGEG 58
Query: 105 GCYVHIGILDVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKH 164
A +Y S + Y + + + T+ + + + M
Sbjct: 59 KAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESR 118
Query: 165 GCYVHIGILDVLQ 177
+ + L
Sbjct: 119 YALLIVDSATALY 131
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 32.3 bits (72), Expect = 0.28
Identities = 14/153 (9%), Positives = 35/153 (22%), Gaps = 11/153 (7%)
Query: 68 LICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGC----YVHIGILDVLQIFGRAG 123
+ +P GAGK+ +A Q+ I+ G ++ I R
Sbjct: 33 ALVSPGGAGKS-----MLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLH 87
Query: 124 R--PQYNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIFGR 181
+ + A I+ L + + + + + +
Sbjct: 88 ALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIE 147
Query: 182 AGRPQYNTSGHATIITPHEKLNHYLSLLTNQIP 214
+ + + +
Sbjct: 148 EENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 32.3 bits (72), Expect = 0.32
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 62 HTNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
T LLI A G+GKT V IA+ + +
Sbjct: 22 TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEK 52
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 31.8 bits (71), Expect = 0.52
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 62 HTNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
T LLI A G+GKT V IA+ + +
Sbjct: 22 TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEK 52
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 30.7 bits (68), Expect = 0.85
Identities = 14/125 (11%), Positives = 35/125 (28%), Gaps = 5/125 (4%)
Query: 67 LLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQ 126
L+ G+GKT++ I + + +H + + L +
Sbjct: 35 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYS 94
Query: 127 YNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNA--KHGCYVHIGILDVLQ---IFGR 181
++ + + + IE + G + ++ V + G
Sbjct: 95 NRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGT 154
Query: 182 AGRPQ 186
R +
Sbjct: 155 IERYE 159
>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 29.4 bits (66), Expect = 0.90
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 590 EPFWIWVEDPDSDFIYHSEYFLLSKKQVITKSEESLIMTIPLSDPLPNQYLIR--AMSDR 647
E +W+ + D S+ + + L +K + + P + MSD
Sbjct: 47 EGWWVVIGDAKSNSLISIKRLTLQQKA---------KVKLDFVAPATGAHNYTLYFMSDA 97
Query: 648 YLGSVVQHSMSFK 660
Y+G ++ S
Sbjct: 98 YMGCDQEYKFSVD 110
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 30.7 bits (68), Expect = 1.1
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 64 NENLLICAPTGAGKTNVAMLTIAHQIKQHIS 94
+LL+ TG GK+ + + +
Sbjct: 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDR 80
Score = 28.0 bits (61), Expect = 7.6
Identities = 22/232 (9%), Positives = 68/232 (29%), Gaps = 16/232 (6%)
Query: 716 NVLLGAPTGSGKTIAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVKFEARLKKK 775
++L+ TG+GK++ + + ++V + P + + K ++
Sbjct: 52 HLLVNGATGTGKSVLLRELAYTGLLR--GDRMVIVDP-NGDMLSKFGRDKDIILNPYDQR 108
Query: 776 VVELT--GDVTPDIQAISSASVIVTTPEKWDGVSRSWQNRNYVQSVALIIIDEI-----H 828
+ ++ D A +V + + + R ++ A +
Sbjct: 109 TKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTPSMRE 168
Query: 829 LLGEDRGPVLEVIVSRV------NFISSYTKRNVRLVGLSTALANAKDLATWLNITKQGM 882
L + + + + + + + L L++ + +
Sbjct: 169 LFHWTTIATFDDLRGFLEGTLAESLFAGSNEASKALTSARFVLSDKLPEHVTMPDGDFSI 228
Query: 883 YNFRPSVRPVPLEVHISGFPGKQYCPRMAKMNKPIYTAIKQHSPEKPVMIFV 934
++ L + G P ++ + T+I E +++
Sbjct: 229 RSWLEDPNGGNLFITWREDMGPALRPLISAWVDVVCTSILSLPEEPKRRLWL 280
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.5 bits (65), Expect = 1.6
Identities = 11/129 (8%), Positives = 36/129 (27%), Gaps = 18/129 (13%)
Query: 45 GVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQH------------ 92
GV L+ + + + +L TG GKT + + +
Sbjct: 11 GVVRLDEM----CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR 66
Query: 93 --ISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFT 150
+ + + +L ++ + + + + + +++ I+ +
Sbjct: 67 AQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLS 126
Query: 151 EHMTKGTEM 159
+
Sbjct: 127 ALARGVSNN 135
>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 133
Score = 28.5 bits (64), Expect = 1.7
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 729 IAAEITCFRVFKQCPEAKVVYIAPLKALVKERVADWKVK---FEARLKKKVVELTGDV 783
+AAE+ V P+ V I P + R +DWK+ + RL+ + G +
Sbjct: 1 MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLR---ITSKGKI 55
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 28.8 bits (64), Expect = 2.0
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 504 ILKPD---------ILNKIEQRGLTVEDLREMPAKEISYMLRDPHVGDKVKQCAWEIPLL 554
++KPD I+++ E++G + L+ + L + H D + + +
Sbjct: 11 MVKPDGIQRGLVGEIISRFEKKGFKLIGLKMF---QCPKELAEEHYKDLSAKSFFPNLIE 67
Query: 555 EIESKLLPITRTVLKIHLTIKANFSWNDKNKSTYAEP 591
I S P+ + + + K AEP
Sbjct: 68 YITSG--PVVCMAWEGVGVVASARKLIGKTDPLQAEP 102
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.8 bits (63), Expect = 2.3
Identities = 13/109 (11%), Positives = 24/109 (22%), Gaps = 4/109 (3%)
Query: 66 NLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGIL--DVLQIFGRAG 123
++ + P G GKT + + IG + G
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 124 RPQYNTSDLGR--TASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHI 170
R R Y + E + + + + I
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVI 111
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.8 bits (63), Expect = 3.6
Identities = 14/167 (8%), Positives = 44/167 (26%), Gaps = 12/167 (7%)
Query: 68 LICAPTGAGKT----NVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAG 123
++ + +G GK+ A+ K+ E + + V +
Sbjct: 39 MVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSL 98
Query: 124 RPQYNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCY--------VHIGILDV 175
+ + + + ++ L+ T+ AK + + + +
Sbjct: 99 KREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISI 158
Query: 176 LQIFGRAGRPQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVAN 222
+ + T + K + ++ + A+
Sbjct: 159 VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAH 205
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 28.6 bits (62), Expect = 3.6
Identities = 24/212 (11%), Positives = 56/212 (26%), Gaps = 13/212 (6%)
Query: 66 NLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIG-ILDVLQIFGRAGR 124
++ P G GKT A L + Q +K + LD + + G
Sbjct: 54 AAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKH 113
Query: 125 PQYNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIFGRAGR 184
+ + G+ + + + + K + + + R
Sbjct: 114 NEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFD 173
Query: 185 PQYNTSGHATIITPHEKLNHYLSLLTNQIPIESNFVANLADNLNAEVALGTIGNIDEAVR 244
K + + ++ N + L + G I R
Sbjct: 174 RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRL-----IQTTRGDI-------R 221
Query: 245 WLIIYINFVANLADNLNAEVALGTIGNIDEAV 276
+I ++ ++ +N E ++ +
Sbjct: 222 QVINLLSTISTTTKTINHENINEISKAWEKNI 253
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.5 bits (62), Expect = 4.3
Identities = 12/153 (7%), Positives = 32/153 (20%), Gaps = 11/153 (7%)
Query: 45 GVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQH----ISQGTEMY 100
L+ + + G+GKT + + + +
Sbjct: 19 SSSELDSV----LGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKG 74
Query: 101 NAKHGCYVHI-GILDVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDIELFTEHMTKGTEM 159
V+I + + + + ++ K
Sbjct: 75 EVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEK--IE 132
Query: 160 YNAKHGCYVHIGILDVLQIFGRAGRPQYNTSGH 192
+ G + + ++D L R
Sbjct: 133 DLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAE 165
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 28.0 bits (61), Expect = 4.9
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 38 IGQEVFKGVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQHI 93
IGQE K SL + + ++L+ P G GKT +A + +
Sbjct: 12 IGQENVKKKLSLALEAAKMRGEVLD---HVLLAGPPGLGKTTLAHIIASELQTNIH 64
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 27.8 bits (60), Expect = 6.2
Identities = 10/76 (13%), Positives = 18/76 (23%), Gaps = 7/76 (9%)
Query: 30 LVARTLRQIGQEVFK---GVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIA 86
+ A E+ G K+L+ + T + GK+ +
Sbjct: 1 VTAADFHMRRSELICLTTGSKNLDTL----LGGGVETGSITELFGEFRTGKSQLCHTLAV 56
Query: 87 HQIKQHISQGTEMYNA 102
G E
Sbjct: 57 TCQIPLDIGGGEGKCL 72
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 27.8 bits (60), Expect = 6.5
Identities = 16/153 (10%), Positives = 38/153 (24%), Gaps = 12/153 (7%)
Query: 30 LVARTLRQIGQEVFK---GVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIA 86
L A + + VF G + ++ + + GKT ++
Sbjct: 4 LTAFEYSEKRKMVFHITTGSQEFDK----LLGGGIESMAITEAFGEFRTGKTQLSHTLCV 59
Query: 87 HQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRPQYNTSDLGRTASNYYIKHNDI 146
R ++N + Y +
Sbjct: 60 TAQLPG-----AGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTS 114
Query: 147 ELFTEHMTKGTEMYNAKHGCYVHIGILDVLQIF 179
E E + ++ + G + + I ++ +F
Sbjct: 115 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 147
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.7 bits (60), Expect = 6.7
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 45 GVKSLNRIQSLVYDTAYHTNENLLICAPTGAGKTNVAMLTIAHQIKQH 92
++ + I + L+ +G GKT ++ + + I +
Sbjct: 11 MIEGFDDI----SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF 54
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 27.6 bits (61), Expect = 7.3
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 6/58 (10%)
Query: 63 TNENLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFG 120
+LI +G GK +A I + S ++ + ++FG
Sbjct: 22 AECPVLITGESGVGKE-----VVARLIHKL-SDRSKEPFVALNVASIPRDIFEAELFG 73
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 27.2 bits (59), Expect = 8.1
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 13/108 (12%)
Query: 66 NLLICAPTGAGKTNVAMLTIAHQIKQHISQGTEMYNAKHGCYVHIGILDVLQIFGRAGRP 125
++ P GAGK T A ++ ++ + H + + ++ G+
Sbjct: 5 RAVLLGPPGAGKG-----TQAPKLAKN-------FCVCHLATGDM-LRAMVASGSELGKK 51
Query: 126 QYNTSDLGRTASNYYIKHNDIELFTEHMTKGTEMYNAKHGCYVHIGIL 173
T D G+ S+ + + K + + +L
Sbjct: 52 LKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEML 99
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 26.5 bits (58), Expect = 9.8
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 504 ILKPD---------ILNKIEQRGLTVEDLREM-PAKEISYMLRDPHVGDKVKQC 547
+KPD I+ + E++G + L+++ P K+++ H
Sbjct: 9 AVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 62
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 26.8 bits (59), Expect = 9.9
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 10/54 (18%)
Query: 504 ILKPD---------ILNKIEQRGLTVEDLREM-PAKEISYMLRDPHVGDKVKQC 547
+KPD I+ + EQ+G + ++ + ++E
Sbjct: 9 AIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPG 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,802,985
Number of extensions: 182732
Number of successful extensions: 661
Number of sequences better than 10.0: 1
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 73
Length of query: 1034
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 940
Effective length of database: 1,116,976
Effective search space: 1049957440
Effective search space used: 1049957440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.8 bits)